RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2757
         (61 letters)



>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national
          project on protein structural and functional analyses;
          1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
          Length = 200

 Score = 25.8 bits (56), Expect = 0.73
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 23 KRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDY 58
          +  ++   SL  +  + +VDE +   +   + + +Y
Sbjct: 13 RAKKEALMSLEIALRKGEVDEDIIPLLKKINSIENY 48


>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein,
          structural genomics, J center for structural genomics,
          JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
          Length = 208

 Score = 25.1 bits (54), Expect = 1.6
 Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 13 QPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDY 58
             + +    +  +++      +  + KVD  + + + L +   D+
Sbjct: 8  HHHHHM-MWEQFKKEKLRGYLEAKNQRKVDFDIVELLDLINSFDDF 52


>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti
          factor, transcription; 2.20A {Vibrio cholerae} SCOP:
          a.4.5.61
          Length = 179

 Score = 23.6 bits (51), Expect = 4.1
 Identities = 4/19 (21%), Positives = 7/19 (36%)

Query: 19 YELNKRLQQRTESLWSSSP 37
          Y++ K         W +S 
Sbjct: 19 YDITKEFSASIGYFWKASH 37


>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
           1wk8_A* 1udz_A 1ue0_A
          Length = 186

 Score = 23.2 bits (51), Expect = 5.9
 Identities = 5/13 (38%), Positives = 5/13 (38%), Gaps = 1/13 (7%)

Query: 7   HT-PYFGQPDYRV 18
           H  P FG  D   
Sbjct: 120 HQAPAFGAEDLET 132


>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
          regulator; 1.80A {Streptococcus mutans}
          Length = 204

 Score = 23.3 bits (50), Expect = 6.2
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 19 YELNKRLQQRTESLWSSSP 37
          YE+N  LQ +    +  + 
Sbjct: 53 YEINDILQNQLSYFYDGTY 71


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 949,742
Number of extensions: 37140
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 7
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)