RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2757
         (61 letters)



>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus
          40, Sv40 [TaxId: 10633]}
          Length = 348

 Score = 28.3 bits (63), Expect = 0.035
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 21 LNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDY 58
          LN ++    E     S     ++   D     ++LP Y
Sbjct: 38 LNPQMGNPDEHQKGLSKSLAAEKQFTDDSPDKEQLPCY 75


>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae
          [TaxId: 666]}
          Length = 178

 Score = 24.2 bits (52), Expect = 1.1
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 19 YELNKRLQQRTESLWSSSPET 39
          Y++ K         W +S + 
Sbjct: 18 YDITKEFSASIGYFWKASHQQ 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 240,474
Number of extensions: 7699
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)