RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2758
(72 letters)
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 91.1 bits (227), Expect = 8e-25
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 5 CRFGDAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPPMFQGQ-GENAVEFASRVKRAISK 63
+F DAFWNSS YS YL+ ++T A V +V +LP + GE+ EFA+RV+ ++
Sbjct: 137 NKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVYTPSEEGEDPKEFANRVRLIMAN 196
Query: 64 QGGLVDLMW 72
+ GL W
Sbjct: 197 KLGLPATDW 205
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 83.7 bits (207), Expect = 5e-21
Identities = 35/66 (53%), Positives = 43/66 (65%)
Query: 7 FGDAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPPMFQGQGENAVEFASRVKRAISKQGG 66
F DAFWNS K S T +L +MTSWA+V DVWYL P GE +EFA RV+ I+K+ G
Sbjct: 279 FVDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAG 338
Query: 67 LVDLMW 72
L + W
Sbjct: 339 LKKVPW 344
>gnl|CDD|235446 PRK05406, PRK05406, LamB/YcsF family protein; Provisional.
Length = 246
Score = 26.6 bits (60), Expect = 0.81
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 45 GQGENAVEFASRVKRAISKQG 65
G G AV FA R++ A+ G
Sbjct: 225 GDGPGAVAFARRIRAALEAAG 245
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 26.7 bits (59), Expect = 0.94
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 35 DVWYLPPMFQGQGENAVEFASRVKRAISKQGGLVDLMW 72
+V YLP QG A +V+ AI+++ LV +MW
Sbjct: 116 EVTYLPINEQGTIT-----AEQVREAITEKTALVSVMW 148
>gnl|CDD|111058 pfam02121, IP_trans, Phosphatidylinositol transfer protein. Along
with the structurally unrelated Sec14p family (found in
pfam00650), this family can bind/exchange one molecule
of phosphatidylinositol (PI) or phosphatidylcholine (PC)
and thus aids their transfer between different membrane
compartments. There are three sub-families - all share
an N-terminal PITP-like domain, whose sequence is highly
conserved. It is described as consisting of three
regions. The N-terminal region is thought to bind the
lipid and contains two helices and an eight-stranded,
mostly antiparallel beta-sheet. An intervening loop
region, which is thought to play a role in
protein-protein interactions, separates this from the
C-terminal region, which exhibits the greatest sequence
variation and may be involved in membrane binding. PITP
alpha has a 16-fold greater affinity for PI than PC.
Together with PITP beta, it is expressed ubiquitously in
all tissues.
Length = 254
Score = 26.3 bits (58), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 12 WNSSKYSMTHYLYMMMTSWAIVADVWYLPPMFQGQGEN 49
WN+ Y+ T Y M ++I + WY P + G EN
Sbjct: 89 WNAYPYTRTRYTNPYMEDFSIKIETWYKPDL--GTQEN 124
>gnl|CDD|183238 PRK11622, PRK11622, hypothetical protein; Provisional.
Length = 401
Score = 25.3 bits (56), Expect = 3.1
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 49 NAVEFASRV---KRAISKQGGLVDLMW 72
+ E +R+ K+A GG VDL+W
Sbjct: 78 DIAEAVNRLLAEKQAGRDTGGSVDLVW 104
>gnl|CDD|173049 PRK14585, pgaD, putative PGA biosynthesis protein; Provisional.
Length = 137
Score = 24.9 bits (54), Expect = 3.2
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 11 FWNSSKYSMTHYLYMMMTSWAIVADVWYLPPM--FQGQGENA 50
+W S S + +++ + A+V VW L FQ Q +A
Sbjct: 45 YWQSEARSRLQFYFLLAVANAVVLIVWALYNKLRFQKQQHHA 86
>gnl|CDD|224457 COG1540, COG1540, Uncharacterized proteins, homologs of lactam
utilization protein B [General function prediction
only].
Length = 252
Score = 24.5 bits (54), Expect = 5.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 45 GQGENAVEFASRVKRAISKQGGLV 68
G +A+ FA R++ A+ +G V
Sbjct: 225 GDNPHALAFARRIRAALEAEGIKV 248
>gnl|CDD|226173 COG3647, COG3647, Predicted membrane protein [Function unknown].
Length = 205
Score = 24.5 bits (53), Expect = 6.4
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 12 WNSSKYSMTHYLYMMMTSWAIV 33
+ +Y ++ Y +M WAI+
Sbjct: 50 ATAKRYPLSPLAYTLMFLWAIL 71
>gnl|CDD|221362 pfam11991, Trp_DMAT, Tryptophan dimethylallyltransferase. This
family of proteins represents tryptophan
dimethylallyltransferase (EC:2.5.1.34), which catalyzes
the first step of ergot alkaloid biosynthesis. Ergot
alkaloids, which are produced by endophyte fungi, can
enhance plant host fitness, but also cause livestock
toxicosis to host plants. This protein is found in
bacteria and eukaryotes. Proteins in this family are
typically between 390 to 465 amino acids in length.
Length = 358
Score = 24.2 bits (53), Expect = 6.8
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 22 YLYMMMTSWAIVADVW 37
YL S A V DVW
Sbjct: 238 YLATPQVSLASVEDVW 253
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 24.2 bits (52), Expect = 7.5
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 22 YLYMMMTSWAI-VADVWYLPPMFQ 44
Y+Y++M++ A+ + +WY PP F
Sbjct: 200 YIYIIMSAIAVLLIIIWYHPPSFA 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.136 0.470
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,602,321
Number of extensions: 260304
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 12
Length of query: 72
Length of database: 10,937,602
Length adjustment: 42
Effective length of query: 30
Effective length of database: 9,074,734
Effective search space: 272242020
Effective search space used: 272242020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)