RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2758
         (72 letters)



>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
           electron transfer, folate-ME enzyme, oxidoreductase;
           HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
           PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
           3ada_A*
          Length = 965

 Score = 29.5 bits (66), Expect = 0.068
 Identities = 9/61 (14%), Positives = 22/61 (36%)

Query: 9   DAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPPMFQGQGENAVEFASRVKRAISKQGGLV 68
               + ++ +  H  ++   +       W  P  +   GE   +   R  +A+    G++
Sbjct: 568 GDQLDPARITAMHSWHLSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESKAVRDSVGML 627

Query: 69  D 69
           D
Sbjct: 628 D 628


>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization
           protein, structural genomics; 1.70A {Pyrococcus
           horikoshii} SCOP: c.6.2.5
          Length = 255

 Score = 25.6 bits (57), Expect = 1.5
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 45  GQGENAVEFASRVKRAISKQG 65
           G    AVE  S +++ + ++G
Sbjct: 224 GDNPKAVEITSYIRKVLEEEG 244


>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics
           consortium, structural genomics, protein structure
           initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP:
           c.6.2.5
          Length = 252

 Score = 25.6 bits (57), Expect = 1.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 45  GQGENAVEFASRVKRAISKQG 65
           G GE+A+ FA R++ A +++G
Sbjct: 219 GDGEHALAFARRLRSAFAEKG 239


>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein,
           structural genomics, NPPSFA; 1.90A {Thermus
           thermophilus} SCOP: c.6.2.5
          Length = 250

 Score = 25.2 bits (56), Expect = 2.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 45  GQGENAVEFASRVKRAISKQG 65
           G   NA E A  V+ A+ + G
Sbjct: 224 GDNPNAPEVARAVREALEQAG 244


>2kw5_A SLR1183 protein; structural genomics, northeast structural
          genomics consortium (NESG), PSI-2, protein structure
          initiative, unknown function; NMR {Synechocystis} PDB:
          3mer_A
          Length = 202

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 12 WNSSKYSMTHYLYMMMTSWAIVADVWYLPP-----MFQGQGENAVEFASR 56
          W+  ++S + Y+Y    +  +V+    +P      + +G+G NA   AS 
Sbjct: 2  WDE-RFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASL 50


>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
           Ser/Thr protein kinase fold, Ser/Thr protein kinase,
           TRA; 1.95A {Leishmania major}
          Length = 362

 Score = 23.8 bits (52), Expect = 6.0
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 10/38 (26%)

Query: 4   ICRFGDAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPP 41
           IC F  A  +++  + THY          V   WY  P
Sbjct: 175 ICDFNLAREDTADANKTHY----------VTHRWYRAP 202


>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
          acid/phospholipid metabolism, transferase; HET: MSE;
          1.50A {Coxiella burnetii}
          Length = 316

 Score = 23.6 bits (52), Expect = 6.8
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 9/24 (37%)

Query: 24 YMMMTSWAIVADVWYLPPMFQGQG 47
          Y+M  S+A V         F GQG
Sbjct: 2  YVMPQSFAFV---------FPGQG 16


>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
           NYSGXRC, structural genomics, protein structure
           initiative; 2.80A {Vibrio parahaemolyticus}
          Length = 213

 Score = 23.4 bits (51), Expect = 7.0
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)

Query: 34  ADVWYLPPMFQGQGENAVEFASRVKRAI 61
           +   +  P      E+   F+ RV RA 
Sbjct: 110 SPAHHSLP----NAESLSTFSQRVSRAW 133


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.136    0.470 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,146,847
Number of extensions: 52502
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 10
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)