RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2758
         (72 letters)



>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 25.3 bits (55), Expect = 0.57
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 45  GQGENAVEFASRVKRAISKQG 65
           G GE+A+ FA R++ A +++G
Sbjct: 219 GDGEHALAFARRLRSAFAEKG 239


>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 254

 Score = 25.3 bits (55), Expect = 0.61
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 45  GQGENAVEFASRVKRAISKQG 65
           G    AVE  S +++ + ++G
Sbjct: 224 GDNPKAVEITSYIRKVLEEEG 244


>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus
           thermophilus [TaxId: 274]}
          Length = 250

 Score = 24.9 bits (54), Expect = 0.79
 Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 4   ICRFGDAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPPMFQ-----GQGENAVEFASRVK 58
                 ++    + +    L M++       D   +          G   NA E A  V+
Sbjct: 178 PRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIHGDNPNAPEVARAVR 237

Query: 59  RAISKQG 65
            A+ + G
Sbjct: 238 EALEQAG 244


>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
           TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
          Length = 247

 Score = 23.7 bits (51), Expect = 2.4
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 24  YMMMTSWAIVADVWYLPP-----MFQGQGENAVEFASRVKRAISKQGGLVDLMW 72
           Y M        + + LP      + +  GE   ++   V + IS   GL D  W
Sbjct: 143 YPMNKRRQGQDNWYMLPAKERASLMKAHGETGRKYQGEVMQVISGAQGLDDWEW 196


>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 22.8 bits (48), Expect = 4.5
 Identities = 7/40 (17%), Positives = 11/40 (27%)

Query: 3   GICRFGDAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPPM 42
           G    GD  W ++   + H         A    +W     
Sbjct: 81  GKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRS 120


>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 350

 Score = 22.0 bits (46), Expect = 8.7
 Identities = 7/53 (13%), Positives = 20/53 (37%)

Query: 8   GDAFWNSSKYSMTHYLYMMMTSWAIVADVWYLPPMFQGQGENAVEFASRVKRA 60
            + + NS +   +      + ++    +      +F  +  +  E+A   K+A
Sbjct: 59  AEWYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKA 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.136    0.470 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 283,312
Number of extensions: 10169
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)