BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2759
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 136/209 (65%), Gaps = 5/209 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
++LFATETFAMGVNMPARTV FDS RK+DGS RDL P EY+QMAGRAGRRGLD +GTVI
Sbjct: 657 KVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVI 716
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSR 134
++CK +P L +MM+GK ++L SQFRLTY MILNL+RV + VE+MM SF EF SR
Sbjct: 717 LLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSR 776
Query: 135 FRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLFE--NFFDQAKRFFEIRDSYMSLVEKTA 192
+ +++ LA+L ++ G + + T L + ++ + E + + ++
Sbjct: 777 KDSKAHEQALAELTKRL---GALEEPDMTGQLVDLPEYYSWGEELTETQHMIQRRIMESV 833
Query: 193 EFKNAIVPGIVLHIWTLEHRDKLGLLLKV 221
++ G V+ + EH + LG++L+V
Sbjct: 834 NGLKSLSAGRVVVVKNQEHHNALGVILQV 862
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 11 VFQK---QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGL 67
+FQ+ ++LFATETFAMGVNMPA++V F T+K+DG RDL P EY Q +GRAGRRGL
Sbjct: 634 LFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGL 693
Query: 68 DESGTVIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMS 127
D +GTVII+ + ELP +L+ M++G +KL+SQFRLTY MILNL+RV + +E+M+ S
Sbjct: 694 DVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMIKRS 753
Query: 128 FKEFGSRFRMQKNKEDLAQLEAKV 151
F E ++ + +++E + E K+
Sbjct: 754 FSENVNQTLVPQHEEKIKSFEEKL 777
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 121/213 (56%), Gaps = 1/213 (0%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
++LFATETFAMG+N+P RTV F S RK+DG+ R+L P E+ QMAGRAGRRGLD +GTVI
Sbjct: 717 KVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI 776
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSR 134
+M K++ +G T+L SQFRLTY MILNL+R+ + VEEM+ SF E ++
Sbjct: 777 VMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSE-NAK 835
Query: 135 FRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLFENFFDQAKRFFEIRDSYMSLVEKTAEF 194
+Q E ++ + Q E + + D E F + + E + M + K+
Sbjct: 836 ETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSI 895
Query: 195 KNAIVPGIVLHIWTLEHRDKLGLLLKVDHRRAL 227
+ + G ++ KLG + KV + A+
Sbjct: 896 LHILKEGRLVAFRDPNDCLKLGFVFKVSLKDAV 928
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
++LFATETF+MG+NMPARTV F S RK+DGS+ R + EYIQMAGRAGRRG D+ GTVI
Sbjct: 464 KVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVI 523
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSR 134
+M + +A K+++ G L SQFRLTY M+LNLMRV + V +++ SF +F S
Sbjct: 524 LMVDSAMSADDA-KQIIKGATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNSFHQFQSY 582
Query: 135 FRMQKNKEDLAQLEAKV 151
++ + + Q+E K+
Sbjct: 583 AKIPEIDKKCVQVERKI 599
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 125/208 (60%), Gaps = 7/208 (3%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
++LFATETF++G+NMPA+TV F S RK+DG + R ++ EYIQM+GRAGRRGLD+ G VI
Sbjct: 497 KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 556
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSR 134
+M E++ Q A K M+ G+ +L S F L Y MILNLMRV ++ E M+ SF +F +
Sbjct: 557 MMIDEKMEPQVA-KGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNV 615
Query: 135 FRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLFENFFDQAKRFFEIRDSYMSLVEKTAEF 194
+ ++ LA+L+ K G EV ++ E +QA + + R+ +V A
Sbjct: 616 ISVPVMEKKLAELK-KDFDGIEVEDEENVKEYHE--IEQAIKGY--REDVRQVVTHPANA 670
Query: 195 KNAIVPGIVLHIWTLEHRDKLGLLLKVD 222
+ + PG ++ I ++ +D G VD
Sbjct: 671 LSFLQPGRLVEI-SVNGKDNYGWGAVVD 697
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 17 LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIM 76
LFATETFAMG+NMPARTV F + RKYDG + R ++ EYIQM+GRAGRRG+D+ G VI+M
Sbjct: 477 LFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 536
Query: 77 CKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEF 131
E++ K+++ G L S F LTY M+LNL+RV +N E M+ SF +F
Sbjct: 537 VDEKM-SPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQF 590
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 17 LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIM 76
LFATETFAMG+NMPARTV F + RK+DG + R ++ EYIQM+GRAGRRG+D+ G VI+M
Sbjct: 479 LFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538
Query: 77 CKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEF 131
E++ K+++ G L S F LTY M+LNL+RV +N E M+ SF +F
Sbjct: 539 VDEKM-SPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQF 592
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 94/140 (67%), Gaps = 8/140 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
++LFATETF++G+NMPA+TV F + RK+DG R ++ EYIQM+GRAGRRGLD+ G VI
Sbjct: 545 KVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVI 604
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSR 134
+M E++ A K M+ G+ +L S F L+Y MILNL+RV ++ E M+ F +F
Sbjct: 605 LMIDEKMDPPVA-KSMLKGEADRLDSAFHLSYNMILNLLRVEGISPEFMLERCFFQF--- 660
Query: 135 FRMQKNKEDLAQLEAKVRQG 154
+N ++ +LEAK+ +
Sbjct: 661 ----QNSLEVPKLEAKLEES 676
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
+ILFATETF++G+NMPARTV F +K+ G+ R L EY+QM+GRAGRRG+D G I
Sbjct: 461 RILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSI 520
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSR 134
++ + + ++A + +M G+ L S F L+Y MILNLMR+ ++ E+++ SF +F +
Sbjct: 521 VILDQSI-DEQAARCLMNGQADVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNM 579
Query: 135 FRMQKNKEDLAQL---EAKVRQGGE--VRQAQDTDVLFENFFDQAKRFFEIRDSYMSLVE 189
+ KE+L QL E + E V++ D + E + ++ ++ D+ + ++
Sbjct: 580 ESLPLIKEELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQ 639
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 31/196 (15%)
Query: 10 DVFQK---QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRG 66
++FQ+ +++FATET A G+NMPART S K G+ER +L P E QMAGRAGRRG
Sbjct: 515 ELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRG 574
Query: 67 LDESGTVIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMV-------- 118
+DE G +++ + G E K++ LVSQF +Y M+LNL+ S V
Sbjct: 575 IDEKGYTVLV-QTAFEGAEECCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTE 633
Query: 119 ---------NVEEMMSMSFKEFGSRFRMQ---KNKEDLAQLEAKVRQGGEVRQAQDTDVL 166
++EE + K FG+ K++LA+++ K+ E+ ++ +D
Sbjct: 634 AGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTVAAKQELAEIDNKI----EILSSEISD-- 687
Query: 167 FENFFDQAKRFFEIRD 182
E ++++ RD
Sbjct: 688 -EAIDKKSRKLLSARD 702
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 83.2 bits (204), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 17 LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIM 76
+FATET A+G+NMPARTV + K++G + L P EY Q+ GRAGRRG+D G +++
Sbjct: 370 VFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVI 429
Query: 77 C--KEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMR-VSMVNVEEMMSMSFKEF 131
E+ G A+ + + L S F +Y M +NL+ +S ++ SF ++
Sbjct: 430 WHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTINLVHWMSPERAHALLEQSFAQY 487
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 81.6 bits (200), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 17 LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIM 76
+FATET A+G+NMPARTV + K++G + L P EY Q+ GRAGRRG+D G +++
Sbjct: 367 VFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVI 426
Query: 77 CKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLM-RVSMVNVEEMMSMSFKEF 131
E+ E + + + L S F +Y M +NL+ R+ ++ SF ++
Sbjct: 427 WHPEIEPSE-VAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQY 481
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
+++++T T A GVN+PAR V DS +Y+ R + AEY QMAGRAGR GLDE G I
Sbjct: 333 KVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAI 392
Query: 75 IMCK 78
I+ +
Sbjct: 393 IVAE 396
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3
PE=3 SV=2
Length = 1714
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 16 ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVII 75
+LF+T T ++GVNMP +TV F G + L P Y QM+GRAGRRG D SG VI
Sbjct: 1308 VLFSTSTLSLGVNMPCKTVMF-------GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIF 1360
Query: 76 M 76
M
Sbjct: 1361 M 1361
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 11 VFQK---QILFATETFAMGVNMPARTVAFDSTRKYDGSER--RDLNPAEYIQMAGRAGRR 65
+FQK QIL AT T A GVN+PA V T+ +D RD++ + +QM GRAGR
Sbjct: 1449 LFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRP 1508
Query: 66 GLDESGTVIIMCKE 79
D +GT I+ KE
Sbjct: 1509 AYDTTGTAIVYTKE 1522
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T+ YD + DL ++ IQ+ GR GR G +
Sbjct: 620 KVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANG 679
Query: 73 VIIMC 77
I+C
Sbjct: 680 TGILC 684
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L AT T A GVN PA V T YDG RR D + +QM GRAGR D+ G
Sbjct: 1641 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGK 1700
Query: 73 VIIMCKE 79
+I+ +
Sbjct: 1701 AVILVHD 1707
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T+ Y DL + +Q+ GRAGR D+ G
Sbjct: 804 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGE 863
Query: 73 VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN--LMRVSMVNVEEMMS-MSFK 129
II+ + + + +L ++ + SQF + A LN + ++ NVEE + +S+
Sbjct: 864 GIIITTHD---KLSHYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYT 920
Query: 130 EFGSRFR 136
R R
Sbjct: 921 YLYVRMR 927
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L AT T A GVN PA V T YDG RR D + +QM GRAGR D+ G
Sbjct: 1641 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGK 1700
Query: 73 VIIMCKE 79
+I+ +
Sbjct: 1701 AVILVHD 1707
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T+ Y DL + +Q+ GRAGR D+ G
Sbjct: 804 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGE 863
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN--LMRVSMVNVEEMMS-MSF 128
+II ++L +L L +Q + SQF + A LN + ++ NVEE + +S+
Sbjct: 864 GIIITTHDKLSHYLSL----LTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISY 919
Query: 129 KEFGSRFR 136
R R
Sbjct: 920 TYLYVRMR 927
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L AT T A GVN PA V T YDG RR D + +QM GRAGR D+ G
Sbjct: 1641 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGK 1700
Query: 73 VIIMCKE 79
+I+ +
Sbjct: 1701 AVILVHD 1707
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T+ Y DL + +Q+ GRAGR D+ G
Sbjct: 805 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGE 864
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN--LMRVSMVNVEEMMS-MSF 128
+II ++L +L L +Q + SQF + A LN + ++ NVEE + MS+
Sbjct: 865 GIIITTHDKLSHYLSL----LTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSY 920
Query: 129 KEFGSRFR 136
R R
Sbjct: 921 TYLYVRMR 928
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L AT T A GVN PA V T YDG RR D + +QM GRAGR D+ G
Sbjct: 1642 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGK 1701
Query: 73 VIIMCKE 79
+I+ +
Sbjct: 1702 AVILVHD 1708
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T+ Y DL + +Q+ GRAGR D+ G
Sbjct: 805 KVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGE 864
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN--LMRVSMVNVEEMMS-MSF 128
+II ++L +L L +Q + SQF + A LN + ++ NVEE + MS+
Sbjct: 865 GIIITTHDKLSHYLSL----LTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSY 920
Query: 129 KEFGSRFR 136
R R
Sbjct: 921 TYLYVRMR 928
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 16 ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVII 75
+LF T T AMGVN+PA V ST Y G + + + +QM GRAGR D + T +I
Sbjct: 609 VLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVI 668
Query: 76 MCK 78
M +
Sbjct: 669 MTR 671
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens
GN=DDX60L PE=2 SV=2
Length = 1706
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
+++ ATET A+G++MP ++V F Y L+ Y QM+GRAGRRG D G V
Sbjct: 1270 RVVTATETLALGIHMPCKSVVFAQDSVY-------LDALNYRQMSGRAGRRGQDLLGNVY 1322
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLM 113
++P + +K+++ +L QF L+ ++L LM
Sbjct: 1323 FF---DIPLPK-IKRLLASSVPELRGQFPLSITLVLRLM 1357
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
QIL +T T A GVN+PA V T +DG +R D + +QM GRAGR D+ G
Sbjct: 1640 QILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGK 1699
Query: 73 VIIMCKEELPGQEALKKMM 91
++M E P ++ KK +
Sbjct: 1700 AMVMVHE--PKKQFYKKFL 1716
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSER--RDLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA TV T+ Y+ DL ++ +Q+ GRAGR D SG
Sbjct: 806 KVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGE 865
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVN 119
++ K++L +L + ++K ++ + L VS VN
Sbjct: 866 GFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVN 913
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L AT T A GVN PA V T YDG RR D + +QM GRAGR D+ G
Sbjct: 1203 QVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGK 1262
Query: 73 VIIMCKE 79
+I+ +
Sbjct: 1263 AVILVHD 1269
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T YD DL + +Q+ GRAGR D+ G
Sbjct: 402 KVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGE 461
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN--LMRVSMVNVEEMMS-MSF 128
II ++L L L +Q + SQF+ + A LN + ++ NV+E + +S+
Sbjct: 462 GTIITTHDKLSHYLTL----LTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSY 517
Query: 129 KEFGSRFR 136
R R
Sbjct: 518 TYLYVRMR 525
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L AT T A GVN PA V T YDG RR D + +QM GRAGR D+ G
Sbjct: 1650 QVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGK 1709
Query: 73 VIIMCKE 79
+I+ +
Sbjct: 1710 AVILVHD 1716
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
++L T T A GVN+PA V T+ Y DL + +Q+ GRAGR D+ G
Sbjct: 813 KVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGE 872
Query: 73 VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN--LMRVSMVNVEEMMS-MSFK 129
II+ + + + +L +Q + SQF + A LN + ++ NVEE + +S+
Sbjct: 873 GIIITTHD---KLSHYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYT 929
Query: 130 EFGSRFR 136
R R
Sbjct: 930 YLYVRMR 936
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 16 ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVII 75
+LF T T AMGVN+PA V ST Y ++ + + +QM GRAGR D + T +I
Sbjct: 478 VLFTTSTLAMGVNLPAHLVIVKSTMHYVSGMFQEYSETDILQMIGRAGRPQFDSTATAVI 537
Query: 76 MCKEELPGQEALKKMMLGKQT 96
M + L +E M+ G T
Sbjct: 538 MTR--LSTKEKYVHMLDGADT 556
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYD-GSERRDLNPAEYIQMAGRAGRRGLDESGTV 73
++L +T T A GVN+PAR V + R+Y+ G ++ EY QMAGRAGR GLD G
Sbjct: 335 RVLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEA 394
Query: 74 IIM 76
II+
Sbjct: 395 III 397
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60
PE=1 SV=3
Length = 1712
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
+++ AT T A+GVNMP ++V F Y L+ Y QM+GRAGRRG D G V
Sbjct: 1286 RVVTATGTLALGVNMPCKSVVFAQNSVY-------LDALNYRQMSGRAGRRGQDLMGDVY 1338
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLM 113
++P + + K++ +L F L+ ++L LM
Sbjct: 1339 FF---DIPFPK-IGKLIKSNVPELRGHFPLSITLVLRLM 1373
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPA-EYIQMAGRAGRRGLDESGTV 73
+++ +T T A GVN+PAR V ++D + R+ P EY QMAGRAGR GLD G
Sbjct: 329 KVVVSTTTLAAGVNLPARRVVVADYERFDPALGREEIPVLEYRQMAGRAGRPGLDPYGEA 388
Query: 74 IIMCKEE 80
+++ + +
Sbjct: 389 VLVARSK 395
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSE--RRDLNPAEYIQMAGRAGRRGLDESGT 72
Q+L +T T A GVN+PA TV T+ Y + +L+P + +QM GRAGR D G
Sbjct: 846 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGE 905
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN 111
+II EL Q L ++ +Q + SQF A LN
Sbjct: 906 GIIITAHSEL--QYYLS--LMNQQLPIESQFMRRLADCLN 941
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+LF+T T A GVN+PA TV T+ Y+ + R +L + +QM GRAGR D+ G
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLT 105
++I EL +L L ++++VS RLT
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVS--RLT 891
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 53.9 bits (128), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGS--ERRDLNPA-EYIQMAGRAGRRGLDESG 71
+++ AT T A GVN+PAR V +Y+ DL P +Y QM+GRAGR G DE+G
Sbjct: 335 KVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENG 394
Query: 72 TVIIMCKEELPGQEALKKMMLGK----QTKLVSQFRLTYAMILNLMRVSMVNVEEMM 124
+++ + + ++ ++ ++ ++KL S+ +I + EE+M
Sbjct: 395 EAVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLISIIASEGEKTTEELM 451
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
++L AT T + GVN+PAR V T + G R L+ Y QM GRAGR+G+D G I
Sbjct: 438 RVLAATSTLSSGVNLPARRVII-RTPIFGG---RPLDILTYKQMVGRAGRKGVDTVGESI 493
Query: 75 IMCK 78
++CK
Sbjct: 494 LICK 497
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 13 QKQILFATETFAMGVNMPARTVAF--DSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDES 70
Q ++ AT T ++G+NMP RTV F DS + LN + Q AGRAGRRG D
Sbjct: 1248 QLTVVIATRTLSLGINMPCRTVVFLGDSLQ---------LNALNFHQAAGRAGRRGFDLL 1298
Query: 71 GTVIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRV 115
G V + +P + + +++ K + QF LT +++L L ++
Sbjct: 1299 GHVGFL---GVPLHK-IYRLLTTKLWDIQGQFPLTTSLVLQLSQL 1339
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGS---ERRDLNPAEYIQMAGRAGRRGLDESG 71
+++ AT T A GVN+PARTV +++ ++ EY QM+GRAGR G D+ G
Sbjct: 333 KVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIG 392
Query: 72 TVIIMCKEELPGQEALKKMMLGK----QTKLVSQFRLTYAMILNLM 113
II+ +++ KK +L ++KL S+ R Y +L ++
Sbjct: 393 ESIIVVRDKEDVDRVFKKYILSDVEPIESKLGSE-RAFYTFLLGIL 437
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPA-EYIQMAGRAGRRGLDESGTV 73
+I+ +T T A G+N+PAR V S R+Y P EY QMAGRAGR LD G
Sbjct: 331 KIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEA 390
Query: 74 IIMCK 78
+++ K
Sbjct: 391 VLLAK 395
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR-DLNPAEYIQMAGRAGRRGLDESGT- 72
Q+L +T T A GVN+PA TV T+ Y+ + +L+P + QM GRAGR D+ G
Sbjct: 877 QVLISTATLAWGVNLPAHTVIIKGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEG 936
Query: 73 VIIMCKEELPGQEALKKMMLGKQTKLVSQ 101
+II + EL +L L +++ +S+
Sbjct: 937 IIITSQHELQFYLSLLNTQLSIESQFISR 965
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDG--SERRDLNPAEYIQMAGRAGRRGLDESGT 72
QIL AT T A GVN PA V T YD +D++ + +QM GRAGR D SG
Sbjct: 1448 QILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGV 1507
Query: 73 VIIMCKE 79
I ++
Sbjct: 1508 ARIFVQD 1514
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
+IL T T A GVN+PA V T+ YD + DL + +Q+ GRAGR + S
Sbjct: 613 KILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAV 672
Query: 73 VIIMCKEE 80
I+ +
Sbjct: 673 AYIITTHD 680
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPA-EYIQMAGRAGRRGLDESGTV 73
+++ +T T A G+N+PAR V S R+Y P EY QMAGRAGR LD G
Sbjct: 331 KLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEA 390
Query: 74 IIMCK--EEL 81
+++ K EEL
Sbjct: 391 VLLAKSYEEL 400
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum
GN=DDB_G0278827 PE=3 SV=1
Length = 1816
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
Q++FAT T A+GVN PA++ F Y LN Q AGRAGRRG D G VI
Sbjct: 1294 QVVFATSTLAVGVNAPAKSSVFLGDSPY-------LNVLTSKQCAGRAGRRGFDNYGNVI 1346
Query: 75 IMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLM 113
+ LP Q+ + +++ + + ++ ++ ++ L+L+
Sbjct: 1347 FV---GLPKQK-INRLLNSRLSNIIGNSVVSPSLCLSLV 1381
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPA-EYIQMAGRAGRRGLDESGTV 73
+++ +T T A G+N+PAR V S R++D + P EY QMAGRAGR LD G
Sbjct: 331 KVISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGRPHLDPYGES 390
Query: 74 IIMCK 78
+++ K
Sbjct: 391 VLLAK 395
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 16 ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVII 75
IL +T T A+GVN+PA V T+ ++ SE ++ + + +QM GRAGR + G +I
Sbjct: 447 ILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVI 506
Query: 76 MCKEEL 81
M ++
Sbjct: 507 MTDSKM 512
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L +T T A GVN+PA TV T+ Y+ + R +L+ + +QM GRAGR D G
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGE 866
Query: 73 VIIMCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILN 111
I++ + +L +Q + SQF +LN
Sbjct: 867 GILITNH---SELQFYLSLLNQQLPIESQFISKLPDMLN 902
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSER--RDLNPAEYIQMAGRAGRRGLDESGT 72
Q+ + G+++ A V T+ Y+G D + +QM GRA R D
Sbjct: 1641 QVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAK 1700
Query: 73 VIIMCK 78
++MC+
Sbjct: 1701 CVLMCQ 1706
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGT 72
Q+L +T T A GVN+PA TV T+ Y + R +L + +QM GRAGR D G
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 866
Query: 73 -VIIMCKEELPGQEALKKMMLGKQTKLVSQF 102
++I EL +L L ++++VS+
Sbjct: 867 GILITSHGELQYYLSLLNQQLPIESQMVSKL 897
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEY--IQMAGRAGRRGLDESGT 72
Q++ A+ + G+N+ A V T+ Y+G ++ Y +QM G A R D+ G
Sbjct: 1642 QVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1701
Query: 73 VIIMCK 78
+IMC+
Sbjct: 1702 CVIMCQ 1707
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYD--GSERRDLNPAEYIQMAGRAGRRGLDESGT 72
+++ AT T + G+N PA V T +Y G ER + E QM GRAGR DE G
Sbjct: 322 KVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPI--LEIQQMMGRAGRPKYDEVGE 379
Query: 73 VIIMCKEELPGQEALKKMMLGKQTKLVSQF 102
II+ E P +++ + GK KL SQ
Sbjct: 380 AIIVSTTEEPST-VMERYIKGKPEKLFSQL 408
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPA-EYIQMAGRAGRRGLDESGTV 73
+++ +T T A G+N+PAR V + R+Y + P EY QMAGRAGR LD G
Sbjct: 331 KLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGRPRLDPYGEA 390
Query: 74 IIMCK 78
+++ K
Sbjct: 391 VLVAK 395
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYD---GSERRDLNPAEYIQMAGRAGRRGLDESG 71
Q+L T T A GVN+PA TV T Y GS + L+P + +QM GRAGR D G
Sbjct: 826 QVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQ-LSPQDVLQMLGRAGRPRYDTFG 884
Query: 72 TVIIMCKE 79
II+ +
Sbjct: 885 EGIIITDQ 892
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
+++ AT T A GVN+PAR V +Y L+ E QM GRAGR G D+ G I
Sbjct: 313 KVIVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGI 372
Query: 75 I---------MCKEELPGQEALKKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMS 125
I + KE + + +GK K+ +F A+ + L S V +EE
Sbjct: 373 IYAASANSYQVVKEYISEEPEPVDSYIGKPEKV--RFNTLAAIAMGLA-TSQVEMEEF-- 427
Query: 126 MSFKEFGSRFRMQKNKED 143
+ S F +N ED
Sbjct: 428 -----YRSTFYYAQNGED 440
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 10 DVFQKQIL---FATETFAMGVNMPARTVAFDSTRKYDGSERRDLNP-AEYIQMAGRAGRR 65
+ F+K +L +T T A G+N+PAR V ++ E P +EY QMAGRAGR
Sbjct: 316 EAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGRP 375
Query: 66 GLDESGTVIIMCKE 79
LD G +++ KE
Sbjct: 376 RLDPYGEAVLIAKE 389
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 15 QILFATETFAMGVNMPARTVA----FDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDES 70
+++ AT T A GVN+PAR V + RK G ++ EY QM+GRAGR G D
Sbjct: 336 KVITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEM-ISTMEYRQMSGRAGRPGYDNH 394
Query: 71 GTVIIMCKEELPGQEALKKMM 91
G II+ + ++ + + K +
Sbjct: 395 GEAIILVRSKVEVDKVIDKYL 415
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 19 ATETFAMGVNMPARTVAFDSTRKYDGSE--RRDLNPAEYIQMAGRAGRRGLDESGTVIIM 76
AT T A GVN PAR V ++YDG+ + L+ E QM GRAGR GLD G +++
Sbjct: 346 ATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLL 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,835,356
Number of Sequences: 539616
Number of extensions: 2940752
Number of successful extensions: 10996
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 10843
Number of HSP's gapped (non-prelim): 154
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)