Query psy2759
Match_columns 229
No_of_seqs 245 out of 2116
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:27:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948|consensus 100.0 2E-49 4.3E-54 371.0 15.4 212 8-225 467-678 (1041)
2 KOG0947|consensus 100.0 1E-42 2.2E-47 332.2 19.3 217 8-225 651-867 (1248)
3 COG4581 Superfamily II RNA hel 100.0 6.3E-32 1.4E-36 264.9 17.0 213 8-224 465-678 (1041)
4 PRK02362 ski2-like helicase; P 99.8 2.3E-19 4.9E-24 175.6 13.7 125 8-133 324-457 (737)
5 PRK01172 ski2-like helicase; P 99.8 2.5E-18 5.4E-23 166.8 12.5 124 8-132 306-436 (674)
6 COG1204 Superfamily II helicas 99.7 4.3E-18 9.4E-23 166.1 6.8 96 8-103 335-431 (766)
7 PRK00254 ski2-like helicase; P 99.7 5.7E-17 1.2E-21 158.4 13.1 124 8-132 316-446 (720)
8 PF13234 rRNA_proc-arch: rRNA- 99.7 5.1E-17 1.1E-21 141.4 8.8 100 121-225 1-100 (268)
9 KOG0952|consensus 99.6 4E-16 8.7E-21 152.0 7.7 104 7-113 416-521 (1230)
10 PLN03137 ATP-dependent DNA hel 99.6 3.2E-15 6.9E-20 149.0 8.7 72 8-91 725-796 (1195)
11 KOG0951|consensus 99.5 7.1E-15 1.5E-19 145.3 7.2 105 8-115 628-734 (1674)
12 COG0514 RecQ Superfamily II DN 99.5 1.9E-14 4E-19 136.0 9.5 77 8-97 275-351 (590)
13 KOG0949|consensus 99.5 2.7E-14 5.8E-19 138.6 10.1 94 8-112 983-1076(1330)
14 PLN00206 DEAD-box ATP-dependen 99.5 1.4E-14 3E-19 136.9 7.5 63 8-80 413-475 (518)
15 TIGR00614 recQ_fam ATP-depende 99.5 3E-14 6.4E-19 133.1 9.0 74 8-93 271-344 (470)
16 PRK11057 ATP-dependent DNA hel 99.5 4.9E-14 1.1E-18 135.5 9.3 63 8-80 281-343 (607)
17 TIGR01389 recQ ATP-dependent D 99.5 5.7E-14 1.2E-18 134.6 8.7 63 8-80 269-331 (591)
18 PRK04837 ATP-dependent RNA hel 99.5 2.8E-14 6E-19 131.4 4.7 63 8-80 300-362 (423)
19 KOG0326|consensus 99.5 7.8E-14 1.7E-18 122.0 6.9 87 8-104 367-454 (459)
20 PRK10590 ATP-dependent RNA hel 99.5 9.6E-14 2.1E-18 129.1 6.8 63 8-80 290-352 (456)
21 PTZ00424 helicase 45; Provisio 99.5 4.4E-14 9.4E-19 128.6 4.3 63 8-80 312-374 (401)
22 PTZ00110 helicase; Provisional 99.4 1.4E-13 3E-18 130.8 7.6 77 8-94 422-499 (545)
23 KOG0338|consensus 99.4 1.5E-12 3.2E-17 119.8 13.3 131 8-152 471-604 (691)
24 KOG0340|consensus 99.4 3.1E-13 6.7E-18 119.5 8.4 65 7-81 298-362 (442)
25 KOG0333|consensus 99.4 1.2E-13 2.7E-18 127.0 6.1 75 8-92 562-637 (673)
26 PRK11192 ATP-dependent RNA hel 99.4 1.4E-13 3E-18 127.0 6.3 62 8-79 290-351 (434)
27 KOG0331|consensus 99.4 1.9E-13 4.2E-18 127.2 6.8 84 8-101 386-470 (519)
28 KOG0330|consensus 99.4 3.6E-13 7.8E-18 120.3 8.2 64 8-81 345-408 (476)
29 PRK01297 ATP-dependent RNA hel 99.4 2.1E-13 4.7E-18 127.3 7.1 63 8-80 380-442 (475)
30 COG0513 SrmB Superfamily II DN 99.4 1.5E-13 3.2E-18 129.8 5.9 62 8-79 318-379 (513)
31 KOG0336|consensus 99.4 2.5E-13 5.3E-18 122.2 6.0 73 8-90 510-583 (629)
32 PRK11776 ATP-dependent RNA hel 99.4 2.6E-13 5.6E-18 126.2 6.3 63 8-80 287-349 (460)
33 PRK11634 ATP-dependent RNA hel 99.4 1.5E-12 3.2E-17 125.6 11.6 63 8-80 290-352 (629)
34 KOG0950|consensus 99.4 3E-13 6.4E-18 131.4 6.4 90 8-103 543-632 (1008)
35 TIGR03817 DECH_helic helicase/ 99.4 4.7E-13 1E-17 131.2 7.2 63 8-80 324-386 (742)
36 KOG0342|consensus 99.4 1.6E-12 3.4E-17 119.0 9.9 73 7-92 374-446 (543)
37 KOG0347|consensus 99.4 2E-12 4.4E-17 119.8 10.4 124 8-145 508-633 (731)
38 KOG0328|consensus 99.4 6.5E-13 1.4E-17 114.6 6.5 63 8-80 311-373 (400)
39 KOG0345|consensus 99.4 1.4E-12 3E-17 118.9 8.9 79 9-100 303-382 (567)
40 PRK04537 ATP-dependent RNA hel 99.4 5.5E-13 1.2E-17 127.4 6.6 63 8-80 302-364 (572)
41 KOG0332|consensus 99.4 1.3E-12 2.9E-17 116.2 8.1 87 8-100 375-465 (477)
42 PF00271 Helicase_C: Helicase 99.4 5.5E-13 1.2E-17 94.2 4.6 51 8-66 28-78 (78)
43 KOG0335|consensus 99.3 2.8E-12 6E-17 118.1 7.2 78 8-95 382-460 (482)
44 PRK13767 ATP-dependent helicas 99.3 7.7E-12 1.7E-16 124.8 9.1 62 8-77 335-397 (876)
45 KOG0350|consensus 99.3 3.6E-12 7.8E-17 116.9 6.1 72 8-91 478-549 (620)
46 COG1202 Superfamily II helicas 99.3 2.9E-12 6.4E-17 119.3 4.6 89 9-101 486-582 (830)
47 PRK09751 putative ATP-dependen 99.3 2.2E-11 4.8E-16 125.5 10.1 107 8-124 322-435 (1490)
48 KOG0953|consensus 99.2 1.1E-11 2.4E-16 115.0 6.3 91 6-99 402-493 (700)
49 TIGR00643 recG ATP-dependent D 99.2 4.5E-11 9.7E-16 115.5 7.2 63 8-79 503-565 (630)
50 KOG0348|consensus 99.2 4.4E-11 9.6E-16 110.7 6.4 73 9-94 493-565 (708)
51 KOG0344|consensus 99.2 5.8E-11 1.3E-15 110.7 6.9 63 8-80 433-495 (593)
52 PRK10917 ATP-dependent DNA hel 99.2 6.3E-11 1.4E-15 115.4 7.4 62 8-79 526-588 (681)
53 KOG0341|consensus 99.1 3E-11 6.5E-16 108.3 4.6 75 8-92 466-542 (610)
54 KOG0343|consensus 99.1 2.2E-10 4.7E-15 106.5 9.4 78 9-98 361-438 (758)
55 TIGR00580 mfd transcription-re 99.1 2.2E-10 4.7E-15 114.6 6.9 64 8-80 707-770 (926)
56 smart00490 HELICc helicase sup 99.0 1.8E-10 3.9E-15 80.6 4.1 51 8-66 32-82 (82)
57 cd00079 HELICc Helicase superf 99.0 1.8E-10 3.9E-15 87.7 4.1 59 8-76 73-131 (131)
58 PRK10689 transcription-repair 99.0 6E-10 1.3E-14 113.5 6.7 64 8-80 856-919 (1147)
59 PRK05298 excinuclease ABC subu 99.0 7.7E-09 1.7E-13 100.4 13.1 66 8-80 491-557 (652)
60 KOG0327|consensus 99.0 6.9E-10 1.5E-14 99.2 5.4 71 8-90 308-378 (397)
61 TIGR01587 cas3_core CRISPR-ass 98.9 1.3E-09 2.9E-14 97.8 6.4 62 8-80 273-336 (358)
62 KOG0351|consensus 98.9 1.3E-09 2.8E-14 108.5 6.5 74 9-94 531-604 (941)
63 PRK12898 secA preprotein trans 98.9 3.8E-09 8.2E-14 101.8 9.5 63 9-81 517-587 (656)
64 KOG0352|consensus 98.9 1.1E-09 2.3E-14 99.5 5.3 63 9-81 301-363 (641)
65 KOG4284|consensus 98.9 1.6E-09 3.5E-14 102.4 5.9 63 9-81 318-380 (980)
66 COG1111 MPH1 ERCC4-like helica 98.9 1.5E-09 3.3E-14 100.1 4.8 67 8-85 420-486 (542)
67 PRK04914 ATP-dependent helicas 98.9 1.9E-08 4.1E-13 100.8 12.2 74 9-93 540-617 (956)
68 PRK09200 preprotein translocas 98.8 1.3E-08 2.7E-13 100.0 9.5 58 14-81 477-542 (790)
69 KOG0346|consensus 98.8 2.8E-08 6.1E-13 90.6 10.8 64 8-81 313-411 (569)
70 PHA02653 RNA helicase NPH-II; 98.8 4.9E-09 1.1E-13 101.8 5.4 68 10-80 443-514 (675)
71 TIGR00631 uvrb excinuclease AB 98.8 8.8E-09 1.9E-13 99.9 7.0 67 8-81 487-554 (655)
72 PRK13766 Hef nuclease; Provisi 98.8 1.2E-08 2.5E-13 100.8 7.2 63 8-81 418-480 (773)
73 TIGR01970 DEAH_box_HrpB ATP-de 98.7 2.2E-08 4.8E-13 99.2 6.4 69 8-79 257-335 (819)
74 KOG0339|consensus 98.7 1.8E-08 3.9E-13 93.3 5.0 64 8-81 513-576 (731)
75 KOG0334|consensus 98.6 6.4E-08 1.4E-12 95.6 7.9 62 8-79 658-719 (997)
76 TIGR03714 secA2 accessory Sec 98.6 2.9E-07 6.3E-12 90.1 12.2 61 8-81 469-538 (762)
77 KOG0353|consensus 98.6 3.3E-08 7.1E-13 88.9 4.7 61 9-79 363-466 (695)
78 TIGR00963 secA preprotein tran 98.6 1.3E-07 2.8E-12 92.1 9.1 64 8-81 448-518 (745)
79 COG4098 comFA Superfamily II D 98.6 1.3E-07 2.7E-12 84.1 7.1 67 9-81 351-417 (441)
80 KOG0329|consensus 98.6 2.3E-08 4.9E-13 85.8 2.3 54 17-80 302-355 (387)
81 PRK11664 ATP-dependent RNA hel 98.6 6E-08 1.3E-12 96.2 5.3 69 8-79 260-338 (812)
82 TIGR00595 priA primosomal prot 98.5 1.2E-07 2.6E-12 89.6 6.1 67 8-80 307-381 (505)
83 KOG0951|consensus 98.5 2E-07 4.2E-12 93.6 7.3 97 7-112 1425-1523(1674)
84 KOG0354|consensus 98.5 1.1E-07 2.3E-12 92.1 5.0 60 8-79 469-528 (746)
85 PRK05580 primosome assembly pr 98.5 1.7E-07 3.8E-12 91.5 6.4 68 8-81 475-550 (679)
86 PRK12906 secA preprotein trans 98.5 1.1E-06 2.5E-11 86.3 11.5 61 9-81 486-554 (796)
87 KOG0349|consensus 98.5 1E-07 2.2E-12 86.9 3.5 62 8-79 553-614 (725)
88 TIGR00603 rad25 DNA repair hel 98.4 3.1E-07 6.7E-12 89.7 6.5 67 8-82 536-609 (732)
89 PHA02558 uvsW UvsW helicase; P 98.4 2E-07 4.3E-12 88.0 4.5 51 9-67 390-441 (501)
90 PRK11131 ATP-dependent RNA hel 98.4 4.6E-07 1E-11 92.8 6.5 66 11-79 335-410 (1294)
91 PRK12900 secA preprotein trans 98.3 2E-06 4.3E-11 85.7 9.6 64 8-81 641-712 (1025)
92 COG1201 Lhr Lhr-like helicases 98.3 1.3E-06 2.8E-11 86.0 7.6 63 8-79 299-361 (814)
93 TIGR02621 cas3_GSU0051 CRISPR- 98.3 7.1E-07 1.5E-11 88.2 5.6 44 14-68 337-380 (844)
94 COG1200 RecG RecG-like helicas 98.3 1.3E-06 2.8E-11 83.7 6.4 65 8-81 528-592 (677)
95 TIGR01967 DEAH_box_HrpA ATP-de 98.3 1.4E-06 3E-11 89.6 6.7 64 13-79 330-403 (1283)
96 KOG0337|consensus 98.2 7.5E-07 1.6E-11 81.0 2.6 65 6-80 304-368 (529)
97 KOG4150|consensus 97.9 1.9E-05 4.1E-10 74.6 5.5 59 11-79 581-639 (1034)
98 COG1197 Mfd Transcription-repa 97.9 2.2E-05 4.7E-10 79.3 6.0 64 8-80 850-913 (1139)
99 COG1198 PriA Primosomal protei 97.8 3.6E-05 7.8E-10 75.4 6.1 74 6-81 527-604 (730)
100 COG1205 Distinct helicase fami 97.8 1.8E-05 3.9E-10 79.1 3.6 62 8-79 359-421 (851)
101 PRK14701 reverse gyrase; Provi 97.7 9.1E-06 2E-10 85.8 1.3 60 8-74 373-450 (1638)
102 TIGR01054 rgy reverse gyrase. 97.6 7.6E-05 1.7E-09 77.0 6.0 30 8-37 370-404 (1171)
103 PRK11448 hsdR type I restricti 97.6 7.8E-05 1.7E-09 76.5 5.4 51 8-66 750-801 (1123)
104 COG1061 SSL2 DNA or RNA helica 97.6 0.00011 2.3E-09 68.6 5.5 50 8-65 327-376 (442)
105 PLN03142 Probable chromatin-re 97.6 0.00044 9.5E-09 70.4 9.9 60 13-80 540-599 (1033)
106 PRK09694 helicase Cas3; Provis 97.3 0.00037 8.1E-09 69.9 5.8 47 10-67 615-664 (878)
107 PRK09401 reverse gyrase; Revie 97.2 0.00013 2.8E-09 75.3 1.7 53 7-63 370-429 (1176)
108 COG0556 UvrB Helicase subunit 97.2 0.0021 4.6E-08 60.6 9.3 63 9-79 492-556 (663)
109 PRK12904 preprotein translocas 97.0 0.0017 3.6E-08 64.6 6.7 68 8-81 473-574 (830)
110 COG1203 CRISPR-associated heli 97.0 0.00071 1.5E-08 66.9 4.1 60 10-80 491-550 (733)
111 KOG0922|consensus 96.9 0.0013 2.9E-08 63.1 5.3 66 11-79 314-389 (674)
112 COG1643 HrpA HrpA-like helicas 96.9 0.0011 2.3E-08 66.2 4.3 63 14-79 314-386 (845)
113 KOG0924|consensus 96.7 0.004 8.8E-08 60.3 6.5 67 10-79 620-696 (1042)
114 KOG0923|consensus 96.3 0.0067 1.5E-07 58.6 5.2 65 11-78 530-604 (902)
115 KOG0926|consensus 95.9 0.004 8.6E-08 61.3 1.9 66 11-79 628-703 (1172)
116 PRK13107 preprotein translocas 95.7 0.062 1.3E-06 54.0 9.3 61 9-81 495-592 (908)
117 PRK13104 secA preprotein trans 95.6 0.084 1.8E-06 53.1 9.8 62 8-81 489-588 (896)
118 TIGR01407 dinG_rel DnaQ family 95.0 0.073 1.6E-06 53.7 7.6 68 8-76 720-811 (850)
119 PRK12899 secA preprotein trans 94.5 0.13 2.8E-06 52.1 7.6 57 14-80 617-681 (970)
120 TIGR00348 hsdR type I site-spe 94.4 0.052 1.1E-06 53.3 4.6 63 8-79 585-650 (667)
121 KOG0920|consensus 94.4 0.044 9.5E-07 55.2 4.1 66 10-78 467-542 (924)
122 PRK12903 secA preprotein trans 94.2 0.45 9.7E-06 47.9 10.7 58 13-80 474-539 (925)
123 PRK12326 preprotein translocas 94.2 0.34 7.3E-06 48.0 9.7 58 14-81 476-548 (764)
124 PF13871 Helicase_C_4: Helicas 94.0 0.12 2.6E-06 45.5 5.5 57 8-68 56-116 (278)
125 PF13307 Helicase_C_2: Helicas 93.9 0.097 2.1E-06 42.2 4.6 68 8-76 54-147 (167)
126 smart00491 HELICc2 helicase su 93.7 0.14 3.1E-06 40.4 5.0 61 15-76 49-136 (142)
127 PRK07246 bifunctional ATP-depe 93.3 0.37 8.1E-06 48.5 8.5 67 8-76 689-780 (820)
128 smart00492 HELICc3 helicase su 92.6 0.3 6.5E-06 38.5 5.4 61 15-76 50-135 (141)
129 PRK08074 bifunctional ATP-depe 92.2 0.25 5.4E-06 50.4 5.5 66 9-76 800-890 (928)
130 PRK11747 dinG ATP-dependent DN 92.0 0.37 7.9E-06 47.7 6.3 67 9-76 581-671 (697)
131 PRK13103 secA preprotein trans 91.6 1.5 3.2E-05 44.5 10.0 31 49-81 562-592 (913)
132 KOG0925|consensus 91.4 0.31 6.8E-06 46.0 4.8 63 14-79 314-386 (699)
133 TIGR02562 cas3_yersinia CRISPR 91.3 0.23 5.1E-06 50.8 4.2 48 11-69 836-883 (1110)
134 PRK14873 primosome assembly pr 91.3 0.41 8.8E-06 47.1 5.7 65 9-79 468-538 (665)
135 PRK12901 secA preprotein trans 91.2 0.75 1.6E-05 47.2 7.6 57 14-80 677-741 (1112)
136 COG4096 HsdR Type I site-speci 90.9 0.61 1.3E-05 46.5 6.4 75 14-103 482-563 (875)
137 KOG0385|consensus 89.7 0.57 1.2E-05 46.5 5.0 60 14-81 541-600 (971)
138 COG4889 Predicted helicase [Ge 88.8 0.43 9.3E-06 48.2 3.6 62 8-77 523-585 (1518)
139 KOG0390|consensus 87.5 1.2 2.6E-05 44.4 5.9 71 11-89 645-716 (776)
140 KOG0389|consensus 83.7 1.1 2.4E-05 44.5 3.5 76 16-101 832-907 (941)
141 COG1199 DinG Rad3-related DNA 82.4 2.1 4.6E-05 41.7 5.0 62 15-77 530-615 (654)
142 KOG0384|consensus 81.4 2.8 6E-05 43.7 5.4 60 13-80 752-811 (1373)
143 COG0553 HepA Superfamily II DN 74.4 4.9 0.00011 39.9 4.9 64 9-80 757-822 (866)
144 PF12029 DUF3516: Domain of un 73.4 7.7 0.00017 36.3 5.5 33 85-117 40-72 (461)
145 TIGR03117 cas_csf4 CRISPR-asso 72.7 5.9 0.00013 38.9 4.8 65 12-77 521-614 (636)
146 PRK04333 50S ribosomal protein 70.4 5.9 0.00013 28.5 3.2 30 196-225 2-32 (84)
147 KOG0388|consensus 68.9 7 0.00015 39.0 4.3 58 14-79 1096-1153(1185)
148 KOG1000|consensus 68.8 2.4 5.1E-05 40.4 1.1 79 7-94 538-616 (689)
149 TIGR03158 cas3_cyano CRISPR-as 68.7 2.7 5.9E-05 38.0 1.5 15 49-63 343-357 (357)
150 TIGR00604 rad3 DNA repair heli 68.5 12 0.00027 37.0 6.1 64 12-76 581-671 (705)
151 KOG0387|consensus 67.9 8.5 0.00019 38.6 4.7 62 9-79 593-657 (923)
152 KOG1015|consensus 63.4 4.6 9.9E-05 41.5 2.0 57 16-80 1221-1277(1567)
153 CHL00122 secA preprotein trans 59.2 17 0.00036 37.0 5.1 24 56-81 609-632 (870)
154 smart00739 KOW KOW (Kyprides, 57.8 26 0.00056 18.7 3.7 26 198-223 2-27 (28)
155 PRK09401 reverse gyrase; Revie 54.6 12 0.00025 39.5 3.3 31 50-80 517-549 (1176)
156 PRK12902 secA preprotein trans 50.4 38 0.00083 34.7 5.9 23 56-80 666-688 (939)
157 COG1110 Reverse gyrase [DNA re 49.5 8.7 0.00019 39.6 1.4 37 8-44 378-420 (1187)
158 COG1110 Reverse gyrase [DNA re 45.2 38 0.00082 35.2 5.0 31 50-80 527-559 (1187)
159 PF00467 KOW: KOW motif; Inte 44.2 42 0.00091 19.1 3.2 26 200-225 1-26 (32)
160 COG0653 SecA Preprotein transl 44.1 6.9 0.00015 39.4 -0.3 54 15-79 479-544 (822)
161 KOG0701|consensus 42.6 7.8 0.00017 41.8 -0.1 50 9-66 350-399 (1606)
162 PF04420 CHD5: CHD5-like prote 40.7 1.1E+02 0.0025 24.4 6.4 44 135-185 40-83 (161)
163 TIGR00596 rad1 DNA repair prot 40.2 60 0.0013 33.0 5.6 14 18-31 431-444 (814)
164 COG0610 Type I site-specific r 38.4 85 0.0018 32.6 6.5 64 7-79 587-652 (962)
165 PF02399 Herpes_ori_bp: Origin 36.1 41 0.00088 34.1 3.6 60 12-78 325-386 (824)
166 PF15003 HAUS2: HAUS augmin-li 36.0 3.1E+02 0.0066 24.2 9.1 48 136-189 158-205 (277)
167 KOG0386|consensus 35.4 34 0.00074 35.4 3.0 58 14-79 780-837 (1157)
168 KOG0392|consensus 33.2 59 0.0013 34.6 4.3 64 8-80 1388-1454(1549)
169 PRK15483 type III restriction- 32.8 58 0.0013 33.8 4.2 51 13-71 501-551 (986)
170 PRK14701 reverse gyrase; Provi 29.6 38 0.00082 37.1 2.4 31 50-80 494-526 (1638)
171 COG3587 Restriction endonuclea 27.0 3.5E+02 0.0075 28.0 8.3 52 14-73 484-535 (985)
172 COG4709 Predicted membrane pro 24.3 32 0.0007 28.5 0.6 59 143-202 6-64 (195)
173 PF08838 DUF1811: Protein of u 23.3 2.1E+02 0.0046 21.3 4.7 23 197-219 54-86 (102)
174 PF02827 PKI: cAMP-dependent p 23.2 31 0.00067 24.2 0.3 13 53-66 8-20 (74)
175 KOG0298|consensus 22.0 36 0.00077 36.1 0.5 58 14-79 1267-1325(1394)
176 KOG1513|consensus 21.8 69 0.0015 32.8 2.4 70 8-77 852-922 (1300)
177 PF08006 DUF1700: Protein of u 21.1 76 0.0017 25.6 2.2 11 144-154 7-17 (181)
178 KOG0391|consensus 20.8 1.7E+02 0.0037 31.5 4.9 55 11-79 1326-1386(1958)
179 KOG0921|consensus 20.7 54 0.0012 33.9 1.5 66 10-78 697-772 (1282)
No 1
>KOG0948|consensus
Probab=100.00 E-value=2e-49 Score=370.97 Aligned_cols=212 Identities=33% Similarity=0.499 Sum_probs=202.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|.+|.+|+||||+||++|+||||++|||++.+||||..+|+++++||+||+|||||+|.|+.|+||++.++++.. ...
T Consensus 467 LFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~-~~a 545 (1041)
T KOG0948|consen 467 LFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEP-QVA 545 (1041)
T ss_pred HHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCH-HHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999988644 578
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLF 167 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 167 (229)
+.++.+.+.||.|+|+++|+|+||+++++++++|+++++||.|||....++.+++++.+++++++.+..++. +.+
T Consensus 546 k~m~kG~aD~LnSaFhLtYnMiLNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E-----~~v 620 (1041)
T KOG0948|consen 546 KDMLKGSADPLNSAFHLTYNMILNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNE-----EEV 620 (1041)
T ss_pred HHHhcCCCcchhhhhhhHHHHHHHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCCh-----HHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999887744 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCcEEEEecCCcccceEEEEEecCcc
Q psy2759 168 ENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGIVLHIWTLEHRDKLGLLLKVDHRR 225 (229)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~gi~~~~~~~~ 225 (229)
.+|+.+..++.+.++++++.+.+|++|++||+|||||.|..++.+|.|||++++.++.
T Consensus 621 ~~yh~l~~ql~~~~k~i~~~~~~P~~~l~fLq~GRlV~v~~g~~d~~WGvvv~f~k~~ 678 (1041)
T KOG0948|consen 621 KEYHDLELQLEKYGKDIREVITHPKYCLPFLQPGRLVKVKVGGDDFFWGVVVNFIKRK 678 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhcccccCCceEEEecCCCCCceeEEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999876543
No 2
>KOG0947|consensus
Probab=100.00 E-value=1e-42 Score=332.17 Aligned_cols=217 Identities=43% Similarity=0.638 Sum_probs=206.7
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|..|.+||||||+||||||||||++|||.+++|+||.++|.+.|+||+||+|||||+|+|..|.+|++|....++...+
T Consensus 651 LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l 730 (1248)
T KOG0947|consen 651 LFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATL 730 (1248)
T ss_pred HHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLF 167 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 167 (229)
++++.+.+.+|+|||+++|+||||+++++.+.+|+|+++||.+|...+..+++++++..+.+++..++..+| .-.+.++
T Consensus 731 ~~li~G~~~~L~SQFRlTY~MILnLLRve~lrvEdm~krSf~E~~s~~~~~~~eq~l~~~~eel~sie~s~c-~~~~~~l 809 (1248)
T KOG0947|consen 731 KRLIMGGPTRLESQFRLTYGMILNLLRVEALRVEDMMKRSFSEFVSQRLSPEHEQELKELDEELLSIEESDC-AIDLKDL 809 (1248)
T ss_pred hhHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHhhhccccc-ccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 4455789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCcEEEEecCCcccceEEEEEecCcc
Q psy2759 168 ENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGIVLHIWTLEHRDKLGLLLKVDHRR 225 (229)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~gi~~~~~~~~ 225 (229)
.+|++...++.+....++....+..+.+++|..||+|.+++.+.+..+|+|+.+.++.
T Consensus 810 ~kyl~a~~e~~e~~~~l~~~~~~s~~~~~~l~~GR~vv~k~~~~~~~lg~vl~~s~~t 867 (1248)
T KOG0947|consen 810 RKYLSAYEEITEYNEKLREEKMKSANILRILKEGRVVVLKNLKEENNLGVVLKVSLNT 867 (1248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCcEEEEcChhhhcccceEEEEecCC
Confidence 9999999999999999999999999999999999999999988889999999987765
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=6.3e-32 Score=264.87 Aligned_cols=213 Identities=35% Similarity=0.457 Sum_probs=190.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|..|.+||||||+||++|+|||+++||+.+++||||.++|+++++||+||+|||||+|+|..|.+|++..+...+.+..
T Consensus 465 Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~ 544 (1041)
T COG4581 465 LFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEA 544 (1041)
T ss_pred HHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999977655546788
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHHhhhhc-HHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMRVSMVN-VEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVL 166 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~~~~~~-~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 166 (229)
..+..+.+.++.|+|.++|+|++|++++..+. ++.++++||.+|+....++...+++...++++..+...-+ .-...+
T Consensus 545 ~~l~~~~~~~L~s~f~~sy~milnll~v~~l~~~e~ll~~Sf~q~~~~~~l~~~~~~l~~~~~~~~~i~~~~~-~~d~~~ 623 (1041)
T COG4581 545 AGLASGKLDPLRSQFRLSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELF-GTDEND 623 (1041)
T ss_pred HHhhcCCCccchhheecchhHHHhhhhhcccCcHHHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhc-cccccc
Confidence 88999999999999999999999999998887 9999999999999999999999999999999998877633 112344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCcEEEEecCCcccceEEEEEecCc
Q psy2759 167 FENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGIVLHIWTLEHRDKLGLLLKVDHR 224 (229)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~gi~~~~~~~ 224 (229)
+.++ ...+.+.++++......++.+.+.++.||++.++.+.....||.++...++
T Consensus 624 ~~~~---~~~~~k~~~~l~~~~~~~a~~~r~~~~gr~~~~~~~~~~~~~g~~~~~~~r 678 (1041)
T COG4581 624 APKL---SLDYEKLRKKLNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRLLKLTKR 678 (1041)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHHhHHHHhhhcceeeeecchhhhhheeeeeeccc
Confidence 5554 456667777888888889999999999999999999887889999988776
No 4
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=2.3e-19 Score=175.62 Aligned_cols=125 Identities=27% Similarity=0.431 Sum_probs=97.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCC-CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGS-ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~-~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~ 86 (229)
.|++|.++|||||+|+++|||+|+++|||+++++||+. +..|+++.+|.||+|||||+|.|..|.+++++.+... ..+
T Consensus 324 ~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~ 402 (737)
T PRK02362 324 AFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDE-LDE 402 (737)
T ss_pred HHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchh-HHH
Confidence 48999999999999999999999999999999999975 4568999999999999999999999999999987532 234
Q ss_pred H-HHHHhcCCCcccchhhhhHHH---HHHHHHhh----hhcHHHHHHhhHHHHHH
Q psy2759 87 L-KKMMLGKQTKLVSQFRLTYAM---ILNLMRVS----MVNVEEMMSMSFKEFGS 133 (229)
Q Consensus 87 ~-~~~~~~~~~~l~S~~~~~~~~---il~~l~~~----~~~~e~~~~~sf~~~~~ 133 (229)
+ .+++..++.|++|++.....+ +++.+..+ ..+..+++..+|...+.
T Consensus 403 ~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 403 LFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred HHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 4 455567999999998543332 23333222 23455777888876653
No 5
>PRK01172 ski2-like helicase; Provisional
Probab=99.77 E-value=2.5e-18 Score=166.78 Aligned_cols=124 Identities=26% Similarity=0.347 Sum_probs=98.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|++|.++|||||+++++|||+|++.|||.++.+|++...+|+++.+|.||+|||||.|.|..|.+++++.+.. +...+
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~-~~~~~ 384 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA-SYDAA 384 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc-cHHHH
Confidence 38899999999999999999999999999999999988888999999999999999999999999999987642 23456
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHH---hhh----hcHHHHHHhhHHHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMR---VSM----VNVEEMMSMSFKEFG 132 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~---~~~----~~~e~~~~~sf~~~~ 132 (229)
.+++.+++.|++|.+.....+..+++. .+. .+..+++..+|...+
T Consensus 385 ~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~ 436 (674)
T PRK01172 385 KKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ 436 (674)
T ss_pred HHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc
Confidence 677779999999998654333333332 221 334566666776443
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.72 E-value=4.3e-18 Score=166.12 Aligned_cols=96 Identities=32% Similarity=0.463 Sum_probs=83.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccC-CCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYD-GSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d-~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~ 86 (229)
.|+.|.|+|||||+|+|+|||+||++|||.+++.|+ ..++++++.-||.||+|||||+|+|..|.+++++.+.......
T Consensus 335 ~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~ 414 (766)
T COG1204 335 AFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYL 414 (766)
T ss_pred HHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHH
Confidence 499999999999999999999999999999999999 4458899999999999999999999999999999655444444
Q ss_pred HHHHHhcCCCcccchhh
Q psy2759 87 LKKMMLGKQTKLVSQFR 103 (229)
Q Consensus 87 ~~~~~~~~~~~l~S~~~ 103 (229)
...+....+.|+.|.+-
T Consensus 415 ~~~~~~~~~e~~~s~l~ 431 (766)
T COG1204 415 AELYIQSEPEPIESKLG 431 (766)
T ss_pred HHHhhccCcchHHHhhc
Confidence 55667778888777654
No 7
>PRK00254 ski2-like helicase; Provisional
Probab=99.71 E-value=5.7e-17 Score=158.40 Aligned_cols=124 Identities=27% Similarity=0.402 Sum_probs=94.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|++|.++|||||+++++|||+|+++|||.++++|+..+..+++..+|+||+|||||+|.|..|.+++++.++.+ ...+
T Consensus 316 ~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~-~~~~ 394 (720)
T PRK00254 316 AFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEP-SKLM 394 (720)
T ss_pred HHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcch-HHHH
Confidence 489999999999999999999999999999999998656666889999999999999999999999999986432 2335
Q ss_pred HHHHhcCCCcccchhhhh---HHHHHHHHHhhh----hcHHHHHHhhHHHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLT---YAMILNLMRVSM----VNVEEMMSMSFKEFG 132 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~---~~~il~~l~~~~----~~~e~~~~~sf~~~~ 132 (229)
.+++.+.+.++.|.+... ...+++.+.... .+..+++..+|..++
T Consensus 395 ~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~ 446 (720)
T PRK00254 395 ERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQ 446 (720)
T ss_pred HHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHh
Confidence 566777777777766432 233444443322 234467788887653
No 8
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=99.69 E-value=5.1e-17 Score=141.38 Aligned_cols=100 Identities=15% Similarity=0.265 Sum_probs=90.5
Q ss_pred HHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCC
Q psy2759 121 EEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLFENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVP 200 (229)
Q Consensus 121 e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (229)
|+|+++||+|||..+.++.+++++.+++++++.+...+ ..++.+||+++.++...+.+++..+.+++++++||+|
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~~~~e~~~~~i~~~~-----~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~fL~~ 75 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKLKELEEELDAIKIED-----EEDVEEYYDLRQELEELRKELRKIITSPKYCLPFLQP 75 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TT-----CTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHHS-T
T ss_pred ChhHHHhHHHHcccccCHHHHHHHHHHHHHHHhccccc-----HhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhCCC
Confidence 68999999999999999999999999999999988764 4889999999999999999999999999999999999
Q ss_pred CcEEEEecCCcccceEEEEEecCcc
Q psy2759 201 GIVLHIWTLEHRDKLGLLLKVDHRR 225 (229)
Q Consensus 201 Gr~v~~~~~~~~~~~gi~~~~~~~~ 225 (229)
||||+|++++.+|+||||+++.++.
T Consensus 76 GRlV~v~~~~~~~~wgvvv~~~~~~ 100 (268)
T PF13234_consen 76 GRLVVVRDGDRDFGWGVVVNFAKKS 100 (268)
T ss_dssp TEEEEEEETTCEEEEEEEEEEEE--
T ss_pred CCEEEEecCCCccceeEEEeccccc
Confidence 9999999999999999999997653
No 9
>KOG0952|consensus
Probab=99.63 E-value=4e-16 Score=152.04 Aligned_cols=104 Identities=33% Similarity=0.369 Sum_probs=94.7
Q ss_pred cccccCCccEEEechhhhcccCCCCceEEEccCcccCCCC--CCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchH
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSE--RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQ 84 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~--~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~ 84 (229)
+.|..|-|+||+||+|+|||+|+||.-|||.+|+-||... +..++..+.+|+.|||||+++|..|.+|+++..+.
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk--- 492 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK--- 492 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccH---
Confidence 4699999999999999999999999999999999999874 77789999999999999999999999999999876
Q ss_pred HHHHHHHhcCCCcccchhhhhHHHHHHHH
Q psy2759 85 EALKKMMLGKQTKLVSQFRLTYAMILNLM 113 (229)
Q Consensus 85 ~~~~~~~~~~~~~l~S~~~~~~~~il~~l 113 (229)
.+.|.-++....|+||+|.......||+.
T Consensus 493 l~~Y~sLl~~~~piES~~~~~L~dnLnAE 521 (1230)
T KOG0952|consen 493 LDHYESLLTGQNPIESQLLPCLIDNLNAE 521 (1230)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHhhhhh
Confidence 67788889999999999988877777764
No 10
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.58 E-value=3.2e-15 Score=148.98 Aligned_cols=72 Identities=25% Similarity=0.355 Sum_probs=63.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
+|.+|+++|||||++|+||||+|++++||+ |+. |.+++.|+|++|||||.| ..|.+|++... .+...+
T Consensus 725 ~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydl----PkSiEsYyQriGRAGRDG--~~g~cILlys~--~D~~~~ 792 (1195)
T PLN03137 725 QWSKDEINIICATVAFGMGINKPDVRFVIH----HSL----PKSIEGYHQECGRAGRDG--QRSSCVLYYSY--SDYIRV 792 (1195)
T ss_pred HHhcCCCcEEEEechhhcCCCccCCcEEEE----cCC----CCCHHHHHhhhcccCCCC--CCceEEEEecH--HHHHHH
Confidence 488999999999999999999999999999 999 999999999999999999 88999999865 333344
Q ss_pred HHHH
Q psy2759 88 KKMM 91 (229)
Q Consensus 88 ~~~~ 91 (229)
..++
T Consensus 793 ~~lI 796 (1195)
T PLN03137 793 KHMI 796 (1195)
T ss_pred HHHH
Confidence 4443
No 11
>KOG0951|consensus
Probab=99.54 E-value=7.1e-15 Score=145.27 Aligned_cols=105 Identities=34% Similarity=0.419 Sum_probs=91.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCC--CCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSE--RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~--~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
.|+.|.|+|||+|.|+|||||+|+.+|||.+|+-||... +.+++|.+.+||.|||||++.|..|..|+..+.+. .
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se---~ 704 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSE---L 704 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchH---h
Confidence 389999999999999999999999999999999999874 55689999999999999999999999999987643 4
Q ss_pred HHHHHHhcCCCcccchhhhhHHHHHHHHHh
Q psy2759 86 ALKKMMLGKQTKLVSQFRLTYAMILNLMRV 115 (229)
Q Consensus 86 ~~~~~~~~~~~~l~S~~~~~~~~il~~l~~ 115 (229)
.++-.+.++..|++|+|......-+|.-.+
T Consensus 705 qyyls~mn~qLpiesq~~~rl~d~lnaeiv 734 (1674)
T KOG0951|consen 705 QYYLSLMNQQLPIESQFVSRLADCLNAEIV 734 (1674)
T ss_pred hhhHHhhhhcCCChHHHHHHhhhhhhhhhh
Confidence 666677889999999998766666665433
No 12
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.9e-14 Score=135.99 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=67.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|..++++|+|||.+|+||||.|+++.||| ||. |-+++.|.|.+|||||+| ....++++..+.+ ..+
T Consensus 275 ~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~l----P~s~EsYyQE~GRAGRDG--~~a~aill~~~~D---~~~ 341 (590)
T COG0514 275 AFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDL----PGSIESYYQETGRAGRDG--LPAEAILLYSPED---IRW 341 (590)
T ss_pred HHhcCCCcEEEEeccccCccCCCCceEEEE----ecC----CCCHHHHHHHHhhccCCC--CcceEEEeecccc---HHH
Confidence 378999999999999999999999999999 999 999999999999999999 9999999998765 455
Q ss_pred HHHHhcCCCc
Q psy2759 88 KKMMLGKQTK 97 (229)
Q Consensus 88 ~~~~~~~~~~ 97 (229)
.+.+.....|
T Consensus 342 ~~~~i~~~~~ 351 (590)
T COG0514 342 QRYLIEQSKP 351 (590)
T ss_pred HHHHHHhhcc
Confidence 5555554444
No 13
>KOG0949|consensus
Probab=99.54 E-value=2.7e-14 Score=138.63 Aligned_cols=94 Identities=38% Similarity=0.630 Sum_probs=77.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|+.|.+.|||||+|++.|||||+++|||. -|. --++|-.|.||+|||||+|+|..|+|+.+--+ ...+
T Consensus 983 LFR~g~L~VlfaT~TLsLGiNMPCrTVvF~----gDs---LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP----~~kv 1051 (1330)
T KOG0949|consen 983 LFRQGHLQVLFATETLSLGINMPCRTVVFA----GDS---LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP----RQKV 1051 (1330)
T ss_pred HhhcCceEEEEEeeehhcccCCCceeEEEe----ccc---cccCchhHHhhhccccccccccccceEEEeCc----HHHH
Confidence 499999999999999999999999999998 443 13789999999999999999999999988544 2467
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNL 112 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~ 112 (229)
++++...-..+.-++..+...++.+
T Consensus 1052 ~rLlts~L~diqG~~p~T~~~~l~l 1076 (1330)
T KOG0949|consen 1052 QRLLTSLLPDIQGAYPYTNTSFLGL 1076 (1330)
T ss_pred HHHHHHhhhcccCCCcchhhHHHHH
Confidence 7777776666777776666666544
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.53 E-value=1.4e-14 Score=136.87 Aligned_cols=63 Identities=32% Similarity=0.430 Sum_probs=60.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.++
T Consensus 413 ~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~----P~s~~~yihRiGRaGR~g--~~G~ai~f~~~~ 475 (518)
T PLN00206 413 SFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDM----PNTIKEYIHQIGRASRMG--EKGTAIVFVNEE 475 (518)
T ss_pred HHHCCCCCEEEEecHhhccCCcccCCEEEE----eCC----CCCHHHHHHhccccccCC--CCeEEEEEEchh
Confidence 489999999999999999999999999999 999 999999999999999999 889999998764
No 15
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=3e-14 Score=133.06 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=64.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|++|.++|||||++++||||+|++++||+ |+. |.++.+|+||+|||||.| ..|.++++..+.+ ...+
T Consensus 271 ~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~----P~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d--~~~~ 338 (470)
T TIGR00614 271 KFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSL----PKSMESYYQESGRAGRDG--LPSECHLFYAPAD--INRL 338 (470)
T ss_pred HHHcCCCcEEEEechhhccCCcccceEEEE----eCC----CCCHHHHHhhhcCcCCCC--CCceEEEEechhH--HHHH
Confidence 388999999999999999999999999999 999 999999999999999999 8899999987743 3445
Q ss_pred HHHHhc
Q psy2759 88 KKMMLG 93 (229)
Q Consensus 88 ~~~~~~ 93 (229)
..++..
T Consensus 339 ~~~~~~ 344 (470)
T TIGR00614 339 RRLLME 344 (470)
T ss_pred HHHHhc
Confidence 555443
No 16
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.51 E-value=4.9e-14 Score=135.48 Aligned_cols=63 Identities=30% Similarity=0.451 Sum_probs=59.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||++++||||+|++++||+ |+. |.+..+|+||+|||||.| ..|.++++..+.
T Consensus 281 ~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~----P~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~ 343 (607)
T PRK11057 281 AFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI----PRNIESYYQETGRAGRDG--LPAEAMLFYDPA 343 (607)
T ss_pred HHHCCCCCEEEEechhhccCCCCCcCEEEE----eCC----CCCHHHHHHHhhhccCCC--CCceEEEEeCHH
Confidence 488999999999999999999999999999 999 999999999999999999 789999998763
No 17
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.49 E-value=5.7e-14 Score=134.57 Aligned_cols=63 Identities=30% Similarity=0.483 Sum_probs=59.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|.+|.++|||||++++||||+|++++||+ |+. |.+..+|+|++|||||.| ..|.+++++..+
T Consensus 269 ~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~----p~s~~~y~Q~~GRaGR~G--~~~~~il~~~~~ 331 (591)
T TIGR01389 269 DFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDM----PGNLESYYQEAGRAGRDG--LPAEAILLYSPA 331 (591)
T ss_pred HHHcCCCcEEEEechhhccCcCCCCCEEEE----cCC----CCCHHHHhhhhccccCCC--CCceEEEecCHH
Confidence 488999999999999999999999999999 999 999999999999999999 888999887764
No 18
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.47 E-value=2.8e-14 Score=131.37 Aligned_cols=63 Identities=38% Similarity=0.548 Sum_probs=59.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.| ..|.+|+|..+.
T Consensus 300 ~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~----P~s~~~yiqR~GR~gR~G--~~G~ai~~~~~~ 362 (423)
T PRK04837 300 EFTRGDLDILVATDVAARGLHIPAVTHVFN----YDL----PDDCEDYVHRIGRTGRAG--ASGHSISLACEE 362 (423)
T ss_pred HHHcCCCcEEEEechhhcCCCccccCEEEE----eCC----CCchhheEeccccccCCC--CCeeEEEEeCHH
Confidence 489999999999999999999999999999 999 999999999999999999 899999998763
No 19
>KOG0326|consensus
Probab=99.47 E-value=7.8e-14 Score=122.03 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=74.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC-CCchHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE-ELPGQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~-~~~~~~~ 86 (229)
+|++|..+.||||+.|.+|||++|++|||+ ||. |-+++.|+||+||+||.| ..|.+|-+..- +......
T Consensus 367 dFr~G~crnLVctDL~TRGIDiqavNvVIN----FDf----pk~aEtYLHRIGRsGRFG--hlGlAInLityedrf~L~~ 436 (459)
T KOG0326|consen 367 DFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDF----PKNAETYLHRIGRSGRFG--HLGLAINLITYEDRFNLYR 436 (459)
T ss_pred hhhccccceeeehhhhhcccccceeeEEEe----cCC----CCCHHHHHHHccCCccCC--CcceEEEEEehhhhhhHHH
Confidence 699999999999999999999999999999 999 999999999999999999 99999977654 3334455
Q ss_pred HHHHHhcCCCcccchhhh
Q psy2759 87 LKKMMLGKQTKLVSQFRL 104 (229)
Q Consensus 87 ~~~~~~~~~~~l~S~~~~ 104 (229)
+.+-+-.+..|+.+....
T Consensus 437 IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 437 IEQELGTEIKPIPSNIDK 454 (459)
T ss_pred HHHHhccccccCCCcCCc
Confidence 666667777777765543
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.45 E-value=9.6e-14 Score=129.14 Aligned_cols=63 Identities=21% Similarity=0.403 Sum_probs=59.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++..+
T Consensus 290 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~----P~~~~~yvqR~GRaGR~g--~~G~ai~l~~~~ 352 (456)
T PRK10590 290 DFKSGDIRVLVATDIAARGLDIEELPHVVN----YEL----PNVPEDYVHRIGRTGRAA--ATGEALSLVCVD 352 (456)
T ss_pred HHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCC----CCCHHHhhhhccccccCC--CCeeEEEEecHH
Confidence 489999999999999999999999999999 999 999999999999999999 889999887654
No 21
>PTZ00424 helicase 45; Provisional
Probab=99.45 E-value=4.4e-14 Score=128.55 Aligned_cols=63 Identities=27% Similarity=0.527 Sum_probs=59.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||+ |+. |.+..+|+||+|||||.| ..|.+++++.++
T Consensus 312 ~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~----p~s~~~y~qr~GRagR~g--~~G~~i~l~~~~ 374 (401)
T PTZ00424 312 EFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDL----PASPENYIHRIGRSGRFG--RKGVAINFVTPD 374 (401)
T ss_pred HHHcCCCCEEEEcccccCCcCcccCCEEEE----ECC----CCCHHHEeecccccccCC--CCceEEEEEcHH
Confidence 489999999999999999999999999999 999 999999999999999999 889999999764
No 22
>PTZ00110 helicase; Provisional
Probab=99.45 E-value=1.4e-13 Score=130.80 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=65.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc-hHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP-GQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~-~~~~ 86 (229)
.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.| ..|.++++..++.. ...+
T Consensus 422 ~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~----P~s~~~yvqRiGRtGR~G--~~G~ai~~~~~~~~~~~~~ 491 (545)
T PTZ00110 422 EFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDF----PNQIEDYVHRIGRTGRAG--AKGASYTFLTPDKYRLARD 491 (545)
T ss_pred HHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCC----CCCHHHHHHHhcccccCC--CCceEEEEECcchHHHHHH
Confidence 489999999999999999999999999999 999 999999999999999999 89999999876532 1233
Q ss_pred HHHHHhcC
Q psy2759 87 LKKMMLGK 94 (229)
Q Consensus 87 ~~~~~~~~ 94 (229)
+.+.+...
T Consensus 492 l~~~l~~~ 499 (545)
T PTZ00110 492 LVKVLREA 499 (545)
T ss_pred HHHHHHHc
Confidence 44444433
No 23
>KOG0338|consensus
Probab=99.44 E-value=1.5e-12 Score=119.75 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=87.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
+|++++|+|||||+++++|+|++.+.+||| |+. |.+...|+||+||+.|.| +.|.+|.|+.+++ -+-+
T Consensus 471 kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~m----P~t~e~Y~HRVGRTARAG--RaGrsVtlvgE~d--Rkll 538 (691)
T KOG0338|consen 471 KFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAM----PKTIEHYLHRVGRTARAG--RAGRSVTLVGESD--RKLL 538 (691)
T ss_pred HHHhccCCEEEEechhhccCCccceeEEEe----ccC----chhHHHHHHHhhhhhhcc--cCcceEEEecccc--HHHH
Confidence 599999999999999999999999999999 999 999999999999999999 9999999998864 3445
Q ss_pred HHHHhc---CCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2759 88 KKMMLG---KQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVR 152 (229)
Q Consensus 88 ~~~~~~---~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~ 152 (229)
+..+.+ ...++.+.. +....|... +......|.-+...+.+-...+.+...+.++.+-+.++.
T Consensus 539 K~iik~~~~a~~klk~R~-i~~~~Iek~-~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le 604 (691)
T KOG0338|consen 539 KEIIKSSTKAGSKLKNRN-IPPEVIEKF-RKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLE 604 (691)
T ss_pred HHHHhhhhhcccchhhcC-CCHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 555444 222333222 112222111 111122333344444444444455555556666666654
No 24
>KOG0340|consensus
Probab=99.44 E-value=3.1e-13 Score=119.54 Aligned_cols=65 Identities=25% Similarity=0.434 Sum_probs=61.0
Q ss_pred cccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
=+|+++.+++|+||+++++|+|+|.+..|+| ||. |-+|.+|+||+||+.|.| +.|.+|.+..+.+
T Consensus 298 srFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~di----Pr~P~~yiHRvGRtARAG--R~G~aiSivt~rD 362 (442)
T KOG0340|consen 298 SRFRSNAARILIATDVASRGLDIPTVELVVN----HDI----PRDPKDYIHRVGRTARAG--RKGMAISIVTQRD 362 (442)
T ss_pred HHHhhcCccEEEEechhhcCCCCCceeEEEe----cCC----CCCHHHHHHhhcchhccc--CCcceEEEechhh
Confidence 3699999999999999999999999999999 999 999999999999999999 9999998887643
No 25
>KOG0333|consensus
Probab=99.44 E-value=1.2e-13 Score=127.03 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=64.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCch-HHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPG-QEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~-~~~ 86 (229)
.|++|..+|||||+++++|||+|+++.||+ ||. +-++.+|+||+||+||.| ..|.+|.|..+.+.+ +.+
T Consensus 562 ~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydm----aksieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 562 DFREGTGDILVATDVAGRGIDIPNVSLVIN----YDM----AKSIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred HHHhcCCCEEEEecccccCCCCCccceeee----cch----hhhHHHHHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 489999999999999999999999999999 999 999999999999999999 999999998875422 234
Q ss_pred HHHHHh
Q psy2759 87 LKKMML 92 (229)
Q Consensus 87 ~~~~~~ 92 (229)
+.+.+.
T Consensus 632 Lkq~l~ 637 (673)
T KOG0333|consen 632 LKQALR 637 (673)
T ss_pred HHHHHH
Confidence 444433
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.43 E-value=1.4e-13 Score=127.02 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=58.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.| ..|.+++++..
T Consensus 290 ~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~----p~s~~~yiqr~GR~gR~g--~~g~ai~l~~~ 351 (434)
T PRK11192 290 RLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDM----PRSADTYLHRIGRTGRAG--RKGTAISLVEA 351 (434)
T ss_pred HHhCCCCcEEEEccccccCccCCCCCEEEE----ECC----CCCHHHHhhcccccccCC--CCceEEEEecH
Confidence 489999999999999999999999999999 999 999999999999999999 88999988865
No 27
>KOG0331|consensus
Probab=99.43 E-value=1.9e-13 Score=127.22 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=68.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC-chHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL-PGQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~-~~~~~ 86 (229)
.|++|...|||||+++|+|+|+|++.+||+ ||. |.++++|+||+||+||.| ..|.++.|..... .....
T Consensus 386 ~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydf----P~~vEdYVHRiGRTGRa~--~~G~A~tfft~~~~~~a~~ 455 (519)
T KOG0331|consen 386 GFREGKSPVLVATDVAARGLDVPDVDLVIN----YDF----PNNVEDYVHRIGRTGRAG--KKGTAITFFTSDNAKLARE 455 (519)
T ss_pred hcccCCcceEEEcccccccCCCccccEEEe----CCC----CCCHHHHHhhcCccccCC--CCceEEEEEeHHHHHHHHH
Confidence 399999999999999999999999999999 999 999999999999999999 9999998876532 22344
Q ss_pred HHHHHhcCCCcccch
Q psy2759 87 LKKMMLGKQTKLVSQ 101 (229)
Q Consensus 87 ~~~~~~~~~~~l~S~ 101 (229)
+.+.+.....++.+.
T Consensus 456 l~~~l~e~~q~v~~~ 470 (519)
T KOG0331|consen 456 LIKVLREAGQTVPPD 470 (519)
T ss_pred HHHHHHHccCCCChH
Confidence 555544444444443
No 28
>KOG0330|consensus
Probab=99.43 E-value=3.6e-13 Score=120.28 Aligned_cols=64 Identities=27% Similarity=0.475 Sum_probs=61.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.-+||+|||++++|+|+|.+.+||| ||. |.++.+|+||+||+||.| +.|.+|.+++..+
T Consensus 345 ~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDi----P~~skDYIHRvGRtaRaG--rsG~~ItlVtqyD 408 (476)
T KOG0330|consen 345 KFKAGARSILVCTDVASRGLDIPHVDVVVN----YDI----PTHSKDYIHRVGRTARAG--RSGKAITLVTQYD 408 (476)
T ss_pred HHhccCCcEEEecchhcccCCCCCceEEEe----cCC----CCcHHHHHHHcccccccC--CCcceEEEEehhh
Confidence 499999999999999999999999999999 999 999999999999999999 9999999998744
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.43 E-value=2.1e-13 Score=127.34 Aligned_cols=63 Identities=24% Similarity=0.451 Sum_probs=59.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||+ |+. |.+..+|+||+|||||.| ..|.++++..++
T Consensus 380 ~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~----P~s~~~y~Qr~GRaGR~g--~~g~~i~~~~~~ 442 (475)
T PRK01297 380 GFREGKIRVLVATDVAGRGIHIDGISHVIN----FTL----PEDPDDYVHRIGRTGRAG--ASGVSISFAGED 442 (475)
T ss_pred HHhCCCCcEEEEccccccCCcccCCCEEEE----eCC----CCCHHHHHHhhCccCCCC--CCceEEEEecHH
Confidence 489999999999999999999999999999 999 999999999999999999 789999998764
No 30
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.5e-13 Score=129.78 Aligned_cols=62 Identities=31% Similarity=0.584 Sum_probs=60.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|.++||||||++|||||+|.+++||+ ||. |.++++|+||+||+||.| ..|.++.|+.+
T Consensus 318 ~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~----p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~ 379 (513)
T COG0513 318 KFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL----PLDPEDYVHRIGRTGRAG--RKGVAISFVTE 379 (513)
T ss_pred HHHcCCCCEEEEechhhccCCccccceeEE----ccC----CCCHHHheeccCccccCC--CCCeEEEEeCc
Confidence 588999999999999999999999999999 999 999999999999999999 99999999986
No 31
>KOG0336|consensus
Probab=99.41 E-value=2.5e-13 Score=122.19 Aligned_cols=73 Identities=30% Similarity=0.489 Sum_probs=63.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC-CCchHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE-ELPGQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~-~~~~~~~ 86 (229)
+|++|.++|||||+.+++|+|+|+++.|++ ||. |.++++|.||+||+||.| +.|.+|.+... +.....+
T Consensus 510 ~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDF----P~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 510 DFKSGEVRILVATDLASRGLDVPDITHVYN----YDF----PRNIEEYVHRVGRTGRAG--RTGTSISFLTRNDWSMAEE 579 (629)
T ss_pred hhhcCceEEEEEechhhcCCCchhcceeec----cCC----CccHHHHHHHhcccccCC--CCcceEEEEehhhHHHHHH
Confidence 599999999999999999999999999999 999 999999999999999999 99999977654 3323344
Q ss_pred HHHH
Q psy2759 87 LKKM 90 (229)
Q Consensus 87 ~~~~ 90 (229)
+.++
T Consensus 580 LI~I 583 (629)
T KOG0336|consen 580 LIQI 583 (629)
T ss_pred HHHH
Confidence 4444
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.41 E-value=2.6e-13 Score=126.22 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=59.7
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.++
T Consensus 287 ~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~----p~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~ 349 (460)
T PRK11776 287 RFANRSCSVLVATDVAARGLDIKALEAVIN----YEL----ARDPEVHVHRIGRTGRAG--SKGLALSLVAPE 349 (460)
T ss_pred HHHcCCCcEEEEecccccccchhcCCeEEE----ecC----CCCHhHhhhhcccccCCC--CcceEEEEEchh
Confidence 489999999999999999999999999999 999 999999999999999999 889999998764
No 33
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.41 E-value=1.5e-12 Score=125.62 Aligned_cols=63 Identities=25% Similarity=0.508 Sum_probs=60.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|++|+++|||||+++++|||+|.+++||+ ||. |.++..|+||+|||||.| ..|.+++++.+.
T Consensus 290 ~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~----P~~~e~yvqRiGRtGRaG--r~G~ai~~v~~~ 352 (629)
T PRK11634 290 RLKDGRLDILIATDVAARGLDVERISLVVN----YDI----PMDSESYVHRIGRTGRAG--RAGRALLFVENR 352 (629)
T ss_pred HHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCC----CCCHHHHHHHhccccCCC--CcceEEEEechH
Confidence 489999999999999999999999999999 999 999999999999999999 899999999864
No 34
>KOG0950|consensus
Probab=99.40 E-value=3e-13 Score=131.44 Aligned_cols=90 Identities=32% Similarity=0.435 Sum_probs=76.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
-|++|.+.|++||+|+++|+|+||++|||.... +.. ..++..+|.||+|||||.|.|..|.+|+++++.. .+.+
T Consensus 543 afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~-~g~---~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e--~~~~ 616 (1008)
T KOG0950|consen 543 AFREGNIFVLVATSTLAAGVNLPARRVIIRAPY-VGR---EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE--KKRV 616 (1008)
T ss_pred HHHhcCeEEEEecchhhccCcCCcceeEEeCCc-ccc---chhhhhhHHhhhhhhhhcccccCcceEEEeeccc--hhHH
Confidence 389999999999999999999999999997333 333 3689999999999999999999999999999854 3556
Q ss_pred HHHHhcCCCcccchhh
Q psy2759 88 KKMMLGKQTKLVSQFR 103 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~ 103 (229)
.+++.....|+.|.+.
T Consensus 617 ~~lv~~~~~~~~S~l~ 632 (1008)
T KOG0950|consen 617 RELVNSPLKPLNSCLS 632 (1008)
T ss_pred HHHHhccccccccccc
Confidence 6777778888888763
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.39 E-value=4.7e-13 Score=131.21 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=59.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|++|++++||||+++++|||+|++++||+ |+. |.+..+|+||+|||||.| ..|.+++++.++
T Consensus 324 ~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~----P~s~~~y~qRiGRaGR~G--~~g~ai~v~~~~ 386 (742)
T TIGR03817 324 ALRDGELLGVATTNALELGVDISGLDAVVI----AGF----PGTRASLWQQAGRAGRRG--QGALVVLVARDD 386 (742)
T ss_pred HHHcCCceEEEECchHhccCCcccccEEEE----eCC----CCCHHHHHHhccccCCCC--CCcEEEEEeCCC
Confidence 489999999999999999999999999999 998 999999999999999999 889999998754
No 36
>KOG0342|consensus
Probab=99.39 E-value=1.6e-12 Score=118.96 Aligned_cols=73 Identities=25% Similarity=0.450 Sum_probs=66.0
Q ss_pred cccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHH
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEA 86 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~ 86 (229)
|.|++.+--|||||++.|||+|+|+++.|+. ||+ |.++.+|+||+||+||.| ..|.++++..+++ ..
T Consensus 374 ~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~----P~d~~~YIHRvGRTaR~g--k~G~alL~l~p~E---l~ 440 (543)
T KOG0342|consen 374 FEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDP----PSDPEQYIHRVGRTAREG--KEGKALLLLAPWE---LG 440 (543)
T ss_pred HHHhhcccceEEecchhhccCCCCCceEEEE----eCC----CCCHHHHHHHhccccccC--CCceEEEEeChhH---HH
Confidence 6799999999999999999999999999999 999 999999999999999999 9999999988754 45
Q ss_pred HHHHHh
Q psy2759 87 LKKMML 92 (229)
Q Consensus 87 ~~~~~~ 92 (229)
+..++.
T Consensus 441 Flr~LK 446 (543)
T KOG0342|consen 441 FLRYLK 446 (543)
T ss_pred HHHHHh
Confidence 555555
No 37
>KOG0347|consensus
Probab=99.38 E-value=2e-12 Score=119.75 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=85.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc-hHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP-GQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~-~~~~ 86 (229)
+|++..--||+||+++|+|+|+|.+..||| |.. |-+++.|+||+||+.|.+ ..|.++++|.+..- ..+.
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIH----YqV----PrtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~K 577 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIH----YQV----PRTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKK 577 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEE----eec----CCccceeEeccccccccc--CCCeEEEEeChHHhHHHHH
Confidence 588899999999999999999999999999 999 999999999999999999 89999999988431 1223
Q ss_pred HHHHHh-cCCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHH
Q psy2759 87 LKKMML-GKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLA 145 (229)
Q Consensus 87 ~~~~~~-~~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~ 145 (229)
+++-+. ....|+ | +....+++.++...--+.++-+..+..+........+++..+
T Consensus 578 L~ktL~k~~dlpi---f-Pv~~~~m~~lkeRvrLA~ei~~~e~k~~~v~~~~sWlkkaA~ 633 (731)
T KOG0347|consen 578 LCKTLKKKEDLPI---F-PVETDIMDALKERVRLAREIDKLEIKSKRVRKEESWLKKAAD 633 (731)
T ss_pred HHHHHhhccCCCc---e-eccHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 333322 233444 2 235666777664332233444444444443333333333333
No 38
>KOG0328|consensus
Probab=99.38 E-value=6.5e-13 Score=114.64 Aligned_cols=63 Identities=27% Similarity=0.506 Sum_probs=60.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|..+||++|++.|+|+|+|.++.||+ ||. |.+.+.|+||+||+||.| +.|.+|-|+.++
T Consensus 311 dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDL----P~nre~YIHRIGRSGRFG--RkGvainFVk~~ 373 (400)
T KOG0328|consen 311 DFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDL----PNNRELYIHRIGRSGRFG--RKGVAINFVKSD 373 (400)
T ss_pred HhhcCCceEEEEechhhccCCcceeEEEEe----cCC----CccHHHHhhhhccccccC--CcceEEEEecHH
Confidence 499999999999999999999999999999 999 999999999999999999 999999999874
No 39
>KOG0345|consensus
Probab=99.38 E-value=1.4e-12 Score=118.85 Aligned_cols=79 Identities=23% Similarity=0.470 Sum_probs=67.0
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHH
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALK 88 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~ 88 (229)
|.+..--||+|||++|+|||+|.+..||+ ||. |.+++.|.||+||+||.| +.|.+|+|..+.. .++.
T Consensus 303 F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~Dp----P~~~~~FvHR~GRTaR~g--r~G~Aivfl~p~E---~aYv 369 (567)
T KOG0345|consen 303 FRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDP----PKDPSSFVHRCGRTARAG--REGNAIVFLNPRE---EAYV 369 (567)
T ss_pred HHhccCceEEeehhhhccCCCCCceEEEe----cCC----CCChhHHHhhcchhhhcc--CccceEEEecccH---HHHH
Confidence 56666789999999999999999999999 999 999999999999999999 9999999998854 4566
Q ss_pred HHHhcCC-Ccccc
Q psy2759 89 KMMLGKQ-TKLVS 100 (229)
Q Consensus 89 ~~~~~~~-~~l~S 100 (229)
+++.-.. .++++
T Consensus 370 eFl~i~~~v~le~ 382 (567)
T KOG0345|consen 370 EFLRIKGKVELER 382 (567)
T ss_pred HHHHhcCccchhh
Confidence 6655553 33443
No 40
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.38 E-value=5.5e-13 Score=127.39 Aligned_cols=63 Identities=29% Similarity=0.481 Sum_probs=59.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.| ..|.+|+|+.+.
T Consensus 302 ~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~----P~s~~~yvqRiGRaGR~G--~~G~ai~~~~~~ 364 (572)
T PRK04537 302 RFQKGQLEILVATDVAARGLHIDGVKYVYN----YDL----PFDAEDYVHRIGRTARLG--EEGDAISFACER 364 (572)
T ss_pred HHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCC----CCCHHHHhhhhcccccCC--CCceEEEEecHH
Confidence 489999999999999999999999999999 999 999999999999999999 889999998763
No 41
>KOG0332|consensus
Probab=99.37 E-value=1.3e-12 Score=116.19 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=68.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCC--CCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc--h
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSE--RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP--G 83 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~--~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~--~ 83 (229)
+|+.|+-||||+|+++|||||.+-+++||+ ||..- .-..+++.|+||+||+||.| +.|.+|-+.+++.. .
T Consensus 375 ~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~s~~~ 448 (477)
T KOG0332|consen 375 RFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTGRFG--KKGLAINLVDDKDSMNI 448 (477)
T ss_pred HHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhccccccc--ccceEEEeecccCcHHH
Confidence 599999999999999999999999999999 88720 00257899999999999999 99999999887543 2
Q ss_pred HHHHHHHHhcCCCcccc
Q psy2759 84 QEALKKMMLGKQTKLVS 100 (229)
Q Consensus 84 ~~~~~~~~~~~~~~l~S 100 (229)
...+.++|......+.+
T Consensus 449 mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 449 MNKIQKHFNMKIKRLDP 465 (477)
T ss_pred HHHHHHHHhhcceecCC
Confidence 23455565554444433
No 42
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.37 E-value=5.5e-13 Score=94.17 Aligned_cols=51 Identities=35% Similarity=0.629 Sum_probs=48.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRG 66 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g 66 (229)
.|++|..+|||||+.+++|||+|..++||. ++. |.++.+|.|++||+||.|
T Consensus 28 ~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~----~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 28 KFNSGEIRVLIATDILGEGIDLPDASHVIF----YDP----PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSS----ESSHHHHHHHHTTSSTTT
T ss_pred HhhccCceEEEeeccccccccccccccccc----ccc----CCCHHHHHHHhhcCCCCC
Confidence 388899999999999999999999999999 998 999999999999999987
No 43
>KOG0335|consensus
Probab=99.32 E-value=2.8e-12 Score=118.07 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=66.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCch-HHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPG-QEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~-~~~ 86 (229)
.|++|.+.+||||+++|+|+|+|.++.||+ ||. |-+..+|+||+||+||.| ..|.++.|.+..... .+.
T Consensus 382 ~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDm----P~d~d~YvHRIGRTGR~G--n~G~atsf~n~~~~~i~~~ 451 (482)
T KOG0335|consen 382 DFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDM----PADIDDYVHRIGRTGRVG--NGGRATSFFNEKNQNIAKA 451 (482)
T ss_pred HhhcCCcceEEEehhhhcCCCCCCCceeEE----eec----CcchhhHHHhccccccCC--CCceeEEEeccccchhHHH
Confidence 489999999999999999999999999999 999 999999999999999999 999999999854322 244
Q ss_pred HHHHHhcCC
Q psy2759 87 LKKMMLGKQ 95 (229)
Q Consensus 87 ~~~~~~~~~ 95 (229)
+.+.+....
T Consensus 452 L~~~l~ea~ 460 (482)
T KOG0335|consen 452 LVEILTEAN 460 (482)
T ss_pred HHHHHHHhc
Confidence 555544433
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.29 E-value=7.7e-12 Score=124.76 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=54.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCC-CCceEEEEee
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGL-DESGTVIIMC 77 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~-d~~G~~i~l~ 77 (229)
.|++|.++|||||+++++|||+|++++||+ |+. |.+..+|+||+|||||++. ...|.++...
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~----P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGS----PKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCC----CCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 489999999999999999999999999999 998 9999999999999999853 2456666643
No 45
>KOG0350|consensus
Probab=99.29 E-value=3.6e-12 Score=116.91 Aligned_cols=72 Identities=19% Similarity=0.419 Sum_probs=63.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|+.|.|.||||||+++||||+-+++.||+ ||. |.+...|+||+||++|.| ..|.|+.+..+.. ...+
T Consensus 478 ~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~----P~~~ktyVHR~GRTARAg--q~G~a~tll~~~~--~r~F 545 (620)
T KOG0350|consen 478 KFAKGDINVLICSDALARGIDVNDVDNVIN----YDP----PASDKTYVHRAGRTARAG--QDGYAITLLDKHE--KRLF 545 (620)
T ss_pred HHhcCCceEEEehhhhhcCCcccccceEee----cCC----CchhhHHHHhhccccccc--CCceEEEeecccc--chHH
Confidence 599999999999999999999999999999 999 999999999999999999 8899998877632 2445
Q ss_pred HHHH
Q psy2759 88 KKMM 91 (229)
Q Consensus 88 ~~~~ 91 (229)
.+++
T Consensus 546 ~klL 549 (620)
T KOG0350|consen 546 SKLL 549 (620)
T ss_pred HHHH
Confidence 5543
No 46
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.27 E-value=2.9e-12 Score=119.33 Aligned_cols=89 Identities=25% Similarity=0.354 Sum_probs=74.4
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc------
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP------ 82 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~------ 82 (229)
|.++.+.++|+|.+++.|||+||..|||.++-.-.- ++++.+|.||.|||||+++++.|.|++++.++..
T Consensus 486 F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~----WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~ 561 (830)
T COG1202 486 FAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIE----WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASME 561 (830)
T ss_pred HhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccc----cCCHHHHHHHhcccCCCCcccCceEEEEecCChhhccccc
Confidence 999999999999999999999999999987654333 8999999999999999999999999999875422
Q ss_pred --hHHHHHHHHhcCCCcccch
Q psy2759 83 --GQEALKKMMLGKQTKLVSQ 101 (229)
Q Consensus 83 --~~~~~~~~~~~~~~~l~S~ 101 (229)
+.+...+++.+.+.|+.-.
T Consensus 562 ~TEdevA~kLL~s~~e~V~ve 582 (830)
T COG1202 562 ETEDEVAFKLLESEPEPVIVE 582 (830)
T ss_pred ccHHHHHHHHhcCCCCcceec
Confidence 2334566777777776543
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.25 E-value=2.2e-11 Score=125.48 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=75.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHH-
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEA- 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~- 86 (229)
.|++|++++||||+++++|||||++++||+ |+. |.+..+|+||+|||||. .+..+.++++..+.. +..+
T Consensus 322 ~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gs----P~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~-dlle~ 391 (1490)
T PRK09751 322 ALKSGELRCVVATSSLELGIDMGAVDLVIQ----VAT----PLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRR-DLVDS 391 (1490)
T ss_pred HHHhCCceEEEeCcHHHccCCcccCCEEEE----eCC----CCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHH-HHHhh
Confidence 489999999999999999999999999999 998 99999999999999997 346677777766532 2111
Q ss_pred ---HHHHHhcCCCcccch---hhhhHHHHHHHHHhhhhcHHHHH
Q psy2759 87 ---LKKMMLGKQTKLVSQ---FRLTYAMILNLMRVSMVNVEEMM 124 (229)
Q Consensus 87 ---~~~~~~~~~~~l~S~---~~~~~~~il~~l~~~~~~~e~~~ 124 (229)
+..++.+..+++... +......++.+...+....++++
T Consensus 392 ~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~~d~l~ 435 (1490)
T PRK09751 392 AVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWY 435 (1490)
T ss_pred HHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCCHHHHH
Confidence 334556665655443 22233444444444445555544
No 48
>KOG0953|consensus
Probab=99.24 E-value=1.1e-11 Score=115.02 Aligned_cols=91 Identities=31% Similarity=0.487 Sum_probs=77.9
Q ss_pred ccccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC-CceEEEEeecCCCchH
Q psy2759 6 PFELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD-ESGTVIIMCKEELPGQ 84 (229)
Q Consensus 6 ~~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d-~~G~~i~l~~~~~~~~ 84 (229)
.|+-.++..+||||||+.+||+|+..++|||.++.||+|++..+++.++..|.+|||||.|.. ..|.+..+..++.
T Consensus 402 ~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL--- 478 (700)
T KOG0953|consen 402 LFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDL--- 478 (700)
T ss_pred HhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhH---
Confidence 466677999999999999999999999999999999999999999999999999999999855 5799888876543
Q ss_pred HHHHHHHhcCCCccc
Q psy2759 85 EALKKMMLGKQTKLV 99 (229)
Q Consensus 85 ~~~~~~~~~~~~~l~ 99 (229)
..+.+.+...+.|+.
T Consensus 479 ~~L~~~l~~p~epi~ 493 (700)
T KOG0953|consen 479 KLLKRILKRPVEPIK 493 (700)
T ss_pred HHHHHHHhCCchHHH
Confidence 566666666666653
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.17 E-value=4.5e-11 Score=115.53 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=56.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++|||||+++++|||+|++++||. ++.. ..+.+.|.|++||+||.| ..|.|++++.+
T Consensus 503 ~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~---r~gls~lhQ~~GRvGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 503 EFREGEVDILVATTVIEVGVDVPNATVMVI----EDAE---RFGLSQLHQLRGRVGRGD--HQSYCLLVYKN 565 (630)
T ss_pred HHHcCCCCEEEECceeecCcccCCCcEEEE----eCCC---cCCHHHHHHHhhhcccCC--CCcEEEEEECC
Confidence 489999999999999999999999999998 8872 257889999999999999 89999999843
No 50
>KOG0348|consensus
Probab=99.16 E-value=4.4e-11 Score=110.66 Aligned_cols=73 Identities=21% Similarity=0.441 Sum_probs=63.3
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHH
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALK 88 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~ 88 (229)
|....=-||+|||++|+|+|+|.+..||. ||. |.++.+|+||+||+.|.| ..|.+++|..+.+ .++.
T Consensus 493 Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~----P~s~adylHRvGRTARaG--~kG~alLfL~P~E---aey~ 559 (708)
T KOG0348|consen 493 FSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDP----PFSTADYLHRVGRTARAG--EKGEALLFLLPSE---AEYV 559 (708)
T ss_pred hccccceEEEehhhhhccCCCCCcCeEEE----eCC----CCCHHHHHHHhhhhhhcc--CCCceEEEecccH---HHHH
Confidence 55555669999999999999999999999 999 999999999999999999 9999999998865 4455
Q ss_pred HHHhcC
Q psy2759 89 KMMLGK 94 (229)
Q Consensus 89 ~~~~~~ 94 (229)
.++...
T Consensus 560 ~~l~~~ 565 (708)
T KOG0348|consen 560 NYLKKH 565 (708)
T ss_pred HHHHhh
Confidence 554443
No 51
>KOG0344|consensus
Probab=99.15 E-value=5.8e-11 Score=110.70 Aligned_cols=63 Identities=25% Similarity=0.483 Sum_probs=60.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|+.|+|.||+||+.+++|+|+-.++.||+ ||. |-+...|+|++||+||.| +.|.+|.|..+.
T Consensus 433 ~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~----p~s~~syihrIGRtgRag--~~g~Aitfytd~ 495 (593)
T KOG0344|consen 433 RFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDF----PQSDLSYIHRIGRTGRAG--RSGKAITFYTDQ 495 (593)
T ss_pred HHhccCeeEEEehhhhhccccccCcceEEe----cCC----CchhHHHHHHhhccCCCC--CCcceEEEeccc
Confidence 499999999999999999999999999999 999 999999999999999999 999999998763
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.15 E-value=6.3e-11 Score=115.41 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=56.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCC-CCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRD-LNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp-~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
+|++|+++|||||+++++|||+|++++||+ ++. | ...+.|.||+||+||.| ..|.|++++.+
T Consensus 526 ~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~----~r~gls~lhQ~~GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 526 AFKAGEIDILVATTVIEVGVDVPNATVMVI----ENA----ERFGLAQLHQLRGRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred HHHcCCCCEEEECcceeeCcccCCCcEEEE----eCC----CCCCHHHHHHHhhcccCCC--CceEEEEEECC
Confidence 489999999999999999999999999998 887 4 46789999999999999 89999999963
No 53
>KOG0341|consensus
Probab=99.15 E-value=3e-11 Score=108.29 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=64.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc--hHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP--GQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~--~~~ 85 (229)
.|+.|+-+|||||++++.|+|+|++..||| ||. |-.+++|.||+||+||.| +.|.+..|.+...+ ...
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDM----P~eIENYVHRIGRTGRsg--~~GiATTfINK~~~esvLl 535 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDM----PEEIENYVHRIGRTGRSG--KTGIATTFINKNQEESVLL 535 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhcc----CCC----hHHHHHHHHHhcccCCCC--CcceeeeeecccchHHHHH
Confidence 389999999999999999999999999999 999 999999999999999999 99999999875422 233
Q ss_pred HHHHHHh
Q psy2759 86 ALKKMML 92 (229)
Q Consensus 86 ~~~~~~~ 92 (229)
+++.++.
T Consensus 536 DLK~LL~ 542 (610)
T KOG0341|consen 536 DLKHLLQ 542 (610)
T ss_pred HHHHHHH
Confidence 4444443
No 54
>KOG0343|consensus
Probab=99.13 E-value=2.2e-10 Score=106.54 Aligned_cols=78 Identities=26% Similarity=0.368 Sum_probs=65.5
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHH
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALK 88 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~ 88 (229)
|....--|||||+++|+|+|+|++.+||. +|. |-+..+|+||+||+.|.+ +.|.++++..++. ...+.
T Consensus 361 F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DC----Pedv~tYIHRvGRtAR~~--~~G~sll~L~psE--eE~~l 428 (758)
T KOG0343|consen 361 FVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDC----PEDVDTYIHRVGRTARYK--ERGESLLMLTPSE--EEAML 428 (758)
T ss_pred HHHhcceEEEeehhhhccCCCcccceEEE----ecC----chhHHHHHHHhhhhhccc--CCCceEEEEcchh--HHHHH
Confidence 66667789999999999999999999999 999 999999999999999999 9999999988753 23445
Q ss_pred HHHhcCCCcc
Q psy2759 89 KMMLGKQTKL 98 (229)
Q Consensus 89 ~~~~~~~~~l 98 (229)
+.+.....|+
T Consensus 429 ~~Lq~k~I~i 438 (758)
T KOG0343|consen 429 KKLQKKKIPI 438 (758)
T ss_pred HHHHHcCCCH
Confidence 5555554444
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.06 E-value=2.2e-10 Score=114.56 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=56.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|++|+++|||||+++++|||+|.+++||. ++.. ..+..+|.|++||+||.| ..|.|++++.+.
T Consensus 707 ~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~---~~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 707 EFYKGEFQVLVCTTIIETGIDIPNANTIII----ERAD---KFGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred HHHcCCCCEEEECChhhcccccccCCEEEE----ecCC---CCCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 599999999999999999999999999987 6662 146778999999999999 899999998653
No 56
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.05 E-value=1.8e-10 Score=80.62 Aligned_cols=51 Identities=35% Similarity=0.583 Sum_probs=46.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRG 66 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g 66 (229)
.|++|..++|++|++++.|+|+|..+.||. ++. |.++.+|.|++||++|.|
T Consensus 32 ~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 32 KFNNGKIKVLVATDVAERGLDLPGVDLVII----YDL----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHHcCCCeEEEECChhhCCcChhcCCEEEE----eCC----CCCHHHHHHhhcccccCC
Confidence 378899999999999999999998888887 777 899999999999999986
No 57
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.04 E-value=1.8e-10 Score=87.74 Aligned_cols=59 Identities=36% Similarity=0.673 Sum_probs=53.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEe
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIM 76 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l 76 (229)
+|.+|.+++|++|..+++|+|+|....||. ++. +.+..+|.|++||+||.| ..|.++++
T Consensus 73 ~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~----~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 73 DFREGEIVVLVATDVIARGIDLPNVSVVIN----YDL----PWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCC----CCCHHHheecccccccCC--CCceEEeC
Confidence 488999999999999999999998888887 777 899999999999999999 67887753
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.99 E-value=6e-10 Score=113.54 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=54.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|.+++||. .+.. .++...|.|++||+||.| ..|.|++++.++
T Consensus 856 ~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad---~fglaq~~Qr~GRvGR~g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 856 DFHHQRFNVLVCTTIIETGIDIPTANTIII----ERAD---HFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 919 (1147)
T ss_pred HHHhcCCCEEEECchhhcccccccCCEEEE----ecCC---CCCHHHHHHHhhccCCCC--CceEEEEEeCCC
Confidence 599999999999999999999999999885 3331 246678999999999999 999999998653
No 59
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.97 E-value=7.7e-09 Score=100.44 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=55.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEc-cCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFD-STRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~-~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|+.|.+.|||||+.+++|+|+|.+++||. +...|.. |-+...|+||+||+||. ..|.++++++..
T Consensus 491 ~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~----~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 491 DLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF----LRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccccc----CCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 688999999999999999999999998776 2222333 56889999999999994 579999999853
No 60
>KOG0327|consensus
Probab=98.96 E-value=6.9e-10 Score=99.16 Aligned_cols=71 Identities=30% Similarity=0.474 Sum_probs=63.7
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
+|++|..+||+.|+.+|+|+|+..++.||+ |+. |-...+|+|++||+||.| ..|.++.++.+.+ ...+
T Consensus 308 ef~~gssrvlIttdl~argidv~~~slvin----ydl----P~~~~~yihR~gr~gr~g--rkg~~in~v~~~d--~~~l 375 (397)
T KOG0327|consen 308 EFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDL----PARKENYIHRIGRAGRFG--RKGVAINFVTEED--VRDL 375 (397)
T ss_pred HhhcCCceEEeeccccccccchhhcceeee----ecc----ccchhhhhhhcccccccC--CCceeeeeehHhh--HHHH
Confidence 599999999999999999999999999999 999 999999999999999999 9999999998732 3444
Q ss_pred HHH
Q psy2759 88 KKM 90 (229)
Q Consensus 88 ~~~ 90 (229)
++.
T Consensus 376 k~i 378 (397)
T KOG0327|consen 376 KDI 378 (397)
T ss_pred HhH
Confidence 443
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.94 E-value=1.3e-09 Score=97.83 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=49.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC--CceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD--ESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d--~~G~~i~l~~~~ 80 (229)
.|++|..++||||+++++|||+|.. +||+ ++. ++..|+||+||+||.|.. ..|.++++...+
T Consensus 273 ~f~~~~~~ilvaT~~~~~GiDi~~~-~vi~----~~~------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 273 EMKKNEKFVIVATQVIEASLDISAD-VMIT----ELA------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhcCCCCeEEEECcchhceeccCCC-EEEE----cCC------CHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 4889999999999999999999854 5554 444 578999999999999854 245888887653
No 62
>KOG0351|consensus
Probab=98.93 E-value=1.3e-09 Score=108.50 Aligned_cols=74 Identities=23% Similarity=0.382 Sum_probs=65.6
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHH
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALK 88 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~ 88 (229)
|-.++++|+|||=+|+||||.|+++.||| |.. |-+.+.|.|.+|||||+| ....++++.... +...+.
T Consensus 531 w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~l----Pks~E~YYQE~GRAGRDG--~~s~C~l~y~~~--D~~~l~ 598 (941)
T KOG0351|consen 531 WMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSL----PKSFEGYYQEAGRAGRDG--LPSSCVLLYGYA--DISELR 598 (941)
T ss_pred HhcCCCeEEEEEeeccCCCCCCceeEEEE----CCC----chhHHHHHHhccccCcCC--CcceeEEecchh--HHHHHH
Confidence 67889999999999999999999999999 999 999999999999999999 889999998874 445566
Q ss_pred HHHhcC
Q psy2759 89 KMMLGK 94 (229)
Q Consensus 89 ~~~~~~ 94 (229)
.++...
T Consensus 599 ~ll~s~ 604 (941)
T KOG0351|consen 599 RLLTSG 604 (941)
T ss_pred HHHHcc
Confidence 665554
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=3.8e-09 Score=101.75 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=55.1
Q ss_pred cccCCccEEEechhhhcccCCC---Cce-----EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMP---ART-----VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~p---a~~-----vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
|+.+..+|+|||+.++||+|++ .+. +||+ |+. |.+...|.|++||+||.| ..|.++.+.+.+
T Consensus 517 ~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~----P~s~r~y~hr~GRTGRqG--~~G~s~~~is~e 586 (656)
T PRK12898 517 RAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TER----HDSARIDRQLAGRCGRQG--DPGSYEAILSLE 586 (656)
T ss_pred HcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCC----CCCHHHHHHhcccccCCC--CCeEEEEEechh
Confidence 3445567999999999999999 555 8999 998 999999999999999999 899999998864
Q ss_pred C
Q psy2759 81 L 81 (229)
Q Consensus 81 ~ 81 (229)
+
T Consensus 587 D 587 (656)
T PRK12898 587 D 587 (656)
T ss_pred H
Confidence 3
No 64
>KOG0352|consensus
Probab=98.93 E-value=1.1e-09 Score=99.50 Aligned_cols=63 Identities=27% Similarity=0.374 Sum_probs=58.5
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
+.+|++.|++||..|+||||.|+++.||| |+. +.+..-|.|.+|||||+| ..+++=++...++
T Consensus 301 WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~----~qn~AgYYQESGRAGRDG--k~SyCRLYYsR~D 363 (641)
T KOG0352|consen 301 WMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSP----SQNLAGYYQESGRAGRDG--KRSYCRLYYSRQD 363 (641)
T ss_pred HhcCCCCEEEEEeccccccCCcceeEEEe----cCc----hhhhHHHHHhccccccCC--Cccceeeeecccc
Confidence 46899999999999999999999999999 999 999999999999999999 8999998887644
No 65
>KOG4284|consensus
Probab=98.91 E-value=1.6e-09 Score=102.42 Aligned_cols=63 Identities=27% Similarity=0.492 Sum_probs=58.2
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
++.-.++|||+|+..|+|||-|.++.||+ .|. |.+-.+|+||+|||||.| ..|.+|.++..+.
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~----p~d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVN----IDA----PADEETYFHRIGRAGRFG--AHGAAVTLLEDER 380 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEe----cCC----CcchHHHHHHhhhccccc--ccceeEEEeccch
Confidence 45567899999999999999999999999 999 999999999999999999 9999999988753
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.89 E-value=1.5e-09 Score=100.14 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=58.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
.|++|..+|||||++...|+|+|.+..||. |+. -.|+--++||-||+||. +.|.++++...+..++.
T Consensus 420 ~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YEp----vpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdea 486 (542)
T COG1111 420 QFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YEP----VPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEA 486 (542)
T ss_pred HHhcCCceEEEEcccccccCCCCcccEEEE----ecC----CcHHHHHHHhhCccccC---CCCeEEEEEecCchHHH
Confidence 599999999999999999999999999998 997 66788899999999987 58899888877654443
No 67
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.87 E-value=1.9e-08 Score=100.81 Aligned_cols=74 Identities=24% Similarity=0.215 Sum_probs=58.0
Q ss_pred ccc--CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEee--cCCCchH
Q psy2759 9 LDV--FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMC--KEELPGQ 84 (229)
Q Consensus 9 F~~--g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~--~~~~~~~ 84 (229)
|++ |.++|||||++.++|+|++..+.||+ ||. |.+|..|.|++||+||.| ..|.+.++. ..+ ...
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fDl----P~nP~~~eQRIGR~~RiG--Q~~~V~i~~~~~~~-t~~ 608 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FDL----PFNPDLLEQRIGRLDRIG--QKHDIQIHVPYLEG-TAQ 608 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEE----ecC----CCCHHHHHHHhcccccCC--CCceEEEEEccCCC-CHH
Confidence 665 56999999999999999999999999 999 999999999999999999 555554433 332 223
Q ss_pred HHHHHHHhc
Q psy2759 85 EALKKMMLG 93 (229)
Q Consensus 85 ~~~~~~~~~ 93 (229)
..+.+.+..
T Consensus 609 e~i~~~~~~ 617 (956)
T PRK04914 609 ERLFRWYHE 617 (956)
T ss_pred HHHHHHHhh
Confidence 455554433
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=1.3e-08 Score=100.04 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=53.4
Q ss_pred ccEEEechhhhcccCC---CCce-----EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 14 KQILFATETFAMGVNM---PART-----VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~---pa~~-----vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
-+|+|||+.++||+|+ |.+. +||+ |+. |.+...|.|++|||||.| ..|.++.+++.++
T Consensus 477 g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~----~d~----p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 477 GAVTVATNMAGRGTDIKLGEGVHELGGLAVIG----TER----MESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CeEEEEccchhcCcCCCcccccccccCcEEEe----ccC----CCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 3899999999999999 6888 9999 998 999999999999999999 9999999987653
No 69
>KOG0346|consensus
Probab=98.83 E-value=2.8e-08 Score=90.55 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=59.1
Q ss_pred ccccCCccEEEech-----------------------------------hhhcccCCCCceEEEccCcccCCCCCCCCCH
Q psy2759 8 ELDVFQKQILFATE-----------------------------------TFAMGVNMPARTVAFDSTRKYDGSERRDLNP 52 (229)
Q Consensus 8 ~F~~g~ikvLvaT~-----------------------------------t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~ 52 (229)
.|..|..+++|||| -+++|||+..+..|++ ||. |-+.
T Consensus 313 QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN----FD~----P~t~ 384 (569)
T KOG0346|consen 313 QFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN----FDF----PETV 384 (569)
T ss_pred HhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee----cCC----CCch
Confidence 48899999999999 3589999999999999 999 9999
Q ss_pred HHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 53 AEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 53 ~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
..|+||+||++|.+ ..|.++.|+.+..
T Consensus 385 ~sYIHRvGRTaRg~--n~GtalSfv~P~e 411 (569)
T KOG0346|consen 385 TSYIHRVGRTARGN--NKGTALSFVSPKE 411 (569)
T ss_pred HHHHHhccccccCC--CCCceEEEecchH
Confidence 99999999999999 9999999998754
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.80 E-value=4.9e-09 Score=101.79 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=54.4
Q ss_pred ccCCccEEEechhhhcccCCCCceEEEccCcccCC----CCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 10 DVFQKQILFATETFAMGVNMPARTVAFDSTRKYDG----SERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 10 ~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~----~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
++|+.+|||||+.+++|||+|++++||+.-.-... ....+++.++|.||+|||||.. .|.++.+.+..
T Consensus 443 ~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~ 514 (675)
T PHA02653 443 SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLD 514 (675)
T ss_pred ccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHH
Confidence 78999999999999999999999999983210011 1123568999999999999994 79999888753
No 71
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.80 E-value=8.8e-09 Score=99.90 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=56.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCC-CCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSE-RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~-~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|+.|.++|||||+.+++|+|+|.+++|+. +|..- ..|-+...|+|++|||||.. .|.++++++...
T Consensus 487 ~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 487 DLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred HHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 688999999999999999999999997776 55321 12778999999999999974 799999988643
No 72
>PRK13766 Hef nuclease; Provisional
Probab=98.78 E-value=1.2e-08 Score=100.83 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=56.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
+|++|.+++||||+++++|+|+|..++||+ ||. |.++..|+||+||+||.| .|.++++...+.
T Consensus 418 ~F~~g~~~vLvaT~~~~eGldi~~~~~VI~----yd~----~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 418 KFRAGEFNVLVSTSVAEEGLDIPSVDLVIF----YEP----VPSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 489999999999999999999999999999 998 889999999999999987 377887776543
No 73
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.70 E-value=2.2e-08 Score=99.20 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=55.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccC----cccCCCC------CCCCCHHHHHHhhcccCCCCCCCceEEEEee
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDST----RKYDGSE------RRDLNPAEYIQMAGRAGRRGLDESGTVIIMC 77 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~----~~~d~~~------~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~ 77 (229)
.|++|..+|||||++++.|||+|.+++||+.- ..||... ..++|-.+|.||+|||||.+ .|.|+-+.
T Consensus 257 ~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~ 333 (819)
T TIGR01970 257 PDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLW 333 (819)
T ss_pred hcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeC
Confidence 37899999999999999999999999999831 1233221 12466788999999999984 89999888
Q ss_pred cC
Q psy2759 78 KE 79 (229)
Q Consensus 78 ~~ 79 (229)
+.
T Consensus 334 t~ 335 (819)
T TIGR01970 334 SE 335 (819)
T ss_pred CH
Confidence 64
No 74
>KOG0339|consensus
Probab=98.69 E-value=1.8e-08 Score=93.26 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=60.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
+|+.+...||+||++.++|+|+|....||+ ||. --++..|.|++||+||.| ..|.++.++.+++
T Consensus 513 ~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~----ardIdththrigrtgRag--~kGvayTlvTeKD 576 (731)
T KOG0339|consen 513 KFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDF----ARDIDTHTHRIGRTGRAG--EKGVAYTLVTEKD 576 (731)
T ss_pred HHhhcCCceEEEeeHhhcCCCccccceeec----ccc----cchhHHHHHHhhhccccc--ccceeeEEechhh
Confidence 599999999999999999999999999999 998 789999999999999999 8899999998754
No 75
>KOG0334|consensus
Probab=98.65 E-value=6.4e-08 Score=95.58 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=59.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
+|++|.+++|+||+.+|+|+|.+...+||+ ||. |-...+|.|++||+||.| +.|.|++|..+
T Consensus 658 dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~----pnh~edyvhR~gRTgrag--rkg~AvtFi~p 719 (997)
T KOG0334|consen 658 DFKNGVVNLLVATSVVARGLDVKELILVVN----YDF----PNHYEDYVHRVGRTGRAG--RKGAAVTFITP 719 (997)
T ss_pred HHhccCceEEEehhhhhcccccccceEEEE----ccc----chhHHHHHHHhcccccCC--ccceeEEEeCh
Confidence 499999999999999999999999999999 999 888888999999999999 99999999987
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.64 E-value=2.9e-07 Score=90.06 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=52.5
Q ss_pred ccccCCccEEEechhhhcccCCC---------CceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeec
Q psy2759 8 ELDVFQKQILFATETFAMGVNMP---------ARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCK 78 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~p---------a~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~ 78 (229)
.|+.| +|+|||+.++||+|+| .+.||++ |+. |....+ .|++|||||.| ..|.++.+++
T Consensus 469 ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit----~~~----ps~rid-~qr~GRtGRqG--~~G~s~~~is 535 (762)
T TIGR03714 469 AGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT----ERM----ENSRVD-LQLRGRSGRQG--DPGSSQFFVS 535 (762)
T ss_pred cCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe----cCC----CCcHHH-HHhhhcccCCC--CceeEEEEEc
Confidence 34444 7999999999999999 8899999 888 666555 99999999999 9999999987
Q ss_pred CCC
Q psy2759 79 EEL 81 (229)
Q Consensus 79 ~~~ 81 (229)
.++
T Consensus 536 ~eD 538 (762)
T TIGR03714 536 LED 538 (762)
T ss_pred cch
Confidence 653
No 77
>KOG0353|consensus
Probab=98.63 E-value=3.3e-08 Score=88.92 Aligned_cols=61 Identities=25% Similarity=0.302 Sum_probs=55.8
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHH-------------------------------
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQ------------------------------- 57 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q------------------------------- 57 (229)
+-.|+|+|+|||-+|+||||.|+++.||+ +.. |-+.++|.|
T Consensus 363 w~a~eiqvivatvafgmgidkpdvrfvih----hsl----~ksienyyqasarillrmtkqknksdtggstqinilevct 434 (695)
T KOG0353|consen 363 WIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSL----PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCT 434 (695)
T ss_pred ccccceEEEEEEeeecccCCCCCeeEEEe----ccc----chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhc
Confidence 56899999999999999999999999999 888 999999999
Q ss_pred ------------hhcccCCCCCCCceEEEEeecC
Q psy2759 58 ------------MAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 58 ------------~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.+|||||++ ....+|++..-
T Consensus 435 nfkiffavfsekesgragrd~--~~a~cilyy~~ 466 (695)
T KOG0353|consen 435 NFKIFFAVFSEKESGRAGRDD--MKADCILYYGF 466 (695)
T ss_pred cceeeeeeecchhccccccCC--CcccEEEEech
Confidence 899999999 77888888753
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.62 E-value=1.3e-07 Score=92.12 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=58.0
Q ss_pred ccccCCccEEEechhhhcccCCCC-------ceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPA-------RTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa-------~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|+.+...|+|||+.++||+|++. ..+||+ ++. |-+...|.|++|||||.| ..|.+..+.+.+
T Consensus 448 ~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~----t~~----p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~e 517 (745)
T TIGR00963 448 AQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG----TER----HESRRIDNQLRGRSGRQG--DPGSSRFFLSLE 517 (745)
T ss_pred HhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe----cCC----CCcHHHHHHHhccccCCC--CCcceEEEEecc
Confidence 478899999999999999999999 458998 887 999999999999999999 899999998765
Q ss_pred C
Q psy2759 81 L 81 (229)
Q Consensus 81 ~ 81 (229)
+
T Consensus 518 D 518 (745)
T TIGR00963 518 D 518 (745)
T ss_pred H
Confidence 4
No 79
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.58 E-value=1.3e-07 Score=84.14 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=58.8
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
|++|++++||+|+.+.+|+-+|.+.|.+- +.++|.++.+..+|++||+||.--...|.++.|.....
T Consensus 351 fR~G~~~lLiTTTILERGVTfp~vdV~Vl------gaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 351 FRDGKITLLITTTILERGVTFPNVDVFVL------GAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred HHcCceEEEEEeehhhcccccccceEEEe------cCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 89999999999999999999999999775 24566789999999999999987667899999987643
No 80
>KOG0329|consensus
Probab=98.58 E-value=2.3e-08 Score=85.80 Aligned_cols=54 Identities=31% Similarity=0.593 Sum_probs=51.9
Q ss_pred EEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 17 LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 17 LvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
||||+.|++|+|+..++++|+ ||. |-++..|+|++|||||.| ..|.+|.+....
T Consensus 302 ~vat~lfgrgmdiervNi~~N----Ydm----p~~~DtYlHrv~rAgrfG--tkglaitfvs~e 355 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN----YDM----PEDSDTYLHRVARAGRFG--TKGLAITFVSDE 355 (387)
T ss_pred hHHhhhhccccCcccceeeec----cCC----CCCchHHHHHhhhhhccc--cccceeehhcch
Confidence 899999999999999999999 999 999999999999999999 999999998764
No 81
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.57 E-value=6e-08 Score=96.20 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=55.7
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccC----cccCCCC------CCCCCHHHHHHhhcccCCCCCCCceEEEEee
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDST----RKYDGSE------RRDLNPAEYIQMAGRAGRRGLDESGTVIIMC 77 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~----~~~d~~~------~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~ 77 (229)
.|++|..+|||||+.++.|||+|.+++||++- ..||... ..++|-.+|.||+|||||.+ .|.|+-+.
T Consensus 260 ~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~ 336 (812)
T PRK11664 260 PAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLY 336 (812)
T ss_pred cccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEec
Confidence 47899999999999999999999999999841 2255421 12356789999999999985 89999887
Q ss_pred cC
Q psy2759 78 KE 79 (229)
Q Consensus 78 ~~ 79 (229)
+.
T Consensus 337 t~ 338 (812)
T PRK11664 337 SK 338 (812)
T ss_pred CH
Confidence 64
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=1.2e-07 Score=89.56 Aligned_cols=67 Identities=30% Similarity=0.380 Sum_probs=53.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEE--EccCcccCCCCCCC------CCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVA--FDSTRKYDGSERRD------LNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vV--i~~~~~~d~~~~rp------~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++|||+|+.++.|+|+|.++.| ++ .|..-+.| -....|+|++|||||.+ ..|.+++.+..
T Consensus 307 ~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~----aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~--~~g~viiqt~~ 380 (505)
T TIGR00595 307 QFANGKADILIGTQMIAKGHHFPNVTLVGVLD----ADSGLHSPDFRAAERGFQLLTQVAGRAGRAE--DPGQVIIQTYN 380 (505)
T ss_pred HHhcCCCCEEEeCcccccCCCCCcccEEEEEc----CcccccCcccchHHHHHHHHHHHHhccCCCC--CCCEEEEEeCC
Confidence 5889999999999999999999999965 45 44321112 23578999999999998 88999988765
Q ss_pred C
Q psy2759 80 E 80 (229)
Q Consensus 80 ~ 80 (229)
.
T Consensus 381 p 381 (505)
T TIGR00595 381 P 381 (505)
T ss_pred C
Confidence 4
No 83
>KOG0951|consensus
Probab=98.52 E-value=2e-07 Score=93.65 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=84.8
Q ss_pred cccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCC--CCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchH
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERR--DLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQ 84 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~r--p~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~ 84 (229)
|.|..|.|+|+|...- ++|+-+.+.-||+.+|+.|||+.++ +++..+..||.|+|.|. |.+|++|...+
T Consensus 1425 ~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~-----~k~vi~~~~~~--- 1495 (1674)
T KOG0951|consen 1425 QLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA-----GKCVIMCHTPK--- 1495 (1674)
T ss_pred HHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC-----ccEEEEecCch---
Confidence 6799999999999999 9999999999999999999998654 58999999999999984 58999998866
Q ss_pred HHHHHHHhcCCCcccchhhhhHHHHHHH
Q psy2759 85 EALKKMMLGKQTKLVSQFRLTYAMILNL 112 (229)
Q Consensus 85 ~~~~~~~~~~~~~l~S~~~~~~~~il~~ 112 (229)
+.+++.++.++.|++|.+.......+|.
T Consensus 1496 k~yykkfl~e~lPves~lq~~lhd~~n~ 1523 (1674)
T KOG0951|consen 1496 KEYYKKFLYEPLPVESHLQHCLHDNFNA 1523 (1674)
T ss_pred HHHHHHhccCcCchHHHHHHHHHhhhhH
Confidence 7889999999999999987655544443
No 84
>KOG0354|consensus
Probab=98.51 E-value=1.1e-07 Score=92.10 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=55.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
+|+.|.++|||||++...|+|++.+++||. ||. ..++--.+|+.|| ||. +.|.+++++.+
T Consensus 469 ~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd~----~snpIrmIQrrGR-gRa---~ns~~vll~t~ 528 (746)
T KOG0354|consen 469 KFRDGEINVLVATSVAEEGLDIGECNLVIC----YDY----SSNPIRMVQRRGR-GRA---RNSKCVLLTTG 528 (746)
T ss_pred HHhCCCccEEEEecchhccCCcccccEEEE----ecC----CccHHHHHHHhcc-ccc---cCCeEEEEEcc
Confidence 599999999999999999999999999999 998 7789999999999 988 47888888874
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.50 E-value=1.7e-07 Score=91.47 Aligned_cols=68 Identities=28% Similarity=0.315 Sum_probs=54.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEE--EccCcccCCCCCCC------CCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVA--FDSTRKYDGSERRD------LNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vV--i~~~~~~d~~~~rp------~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++|||+|+.+++|+|+|.+++| ++ .|..-+.| -....|+|++|||||.+ ..|.+++.+.+
T Consensus 475 ~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~----aD~~l~~pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~ 548 (679)
T PRK05580 475 QFARGEADILIGTQMLAKGHDFPNVTLVGVLD----ADLGLFSPDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYH 548 (679)
T ss_pred HHhcCCCCEEEEChhhccCCCCCCcCEEEEEc----CchhccCCccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCC
Confidence 5899999999999999999999999976 44 33311112 13478999999999988 89999998876
Q ss_pred CC
Q psy2759 80 EL 81 (229)
Q Consensus 80 ~~ 81 (229)
..
T Consensus 549 p~ 550 (679)
T PRK05580 549 PE 550 (679)
T ss_pred CC
Confidence 43
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.48 E-value=1.1e-06 Score=86.26 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=53.7
Q ss_pred cccCCccEEEechhhhcccCCC---Cce-----EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMP---ART-----VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~p---a~~-----vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
++.|. |+|||+.++||.|++ .+. +||+ ++. |.+...|.|+.|||||.| ..|.+..+++.+
T Consensus 486 g~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~----te~----pes~ri~~Ql~GRtGRqG--~~G~s~~~~sle 553 (796)
T PRK12906 486 GQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG----TER----HESRRIDNQLRGRSGRQG--DPGSSRFYLSLE 553 (796)
T ss_pred CCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe----eec----CCcHHHHHHHhhhhccCC--CCcceEEEEecc
Confidence 44444 999999999999995 778 8998 887 999999999999999999 999999998865
Q ss_pred C
Q psy2759 81 L 81 (229)
Q Consensus 81 ~ 81 (229)
+
T Consensus 554 D 554 (796)
T PRK12906 554 D 554 (796)
T ss_pred c
Confidence 4
No 87
>KOG0349|consensus
Probab=98.47 E-value=1e-07 Score=86.93 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=57.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|+.+.++.||||+++|+|+|+-..-.+|+ -.. |-+-.+|.||+||.||.. +.|.+|.++..
T Consensus 553 ~Fkk~dvkflictdvaargldi~g~p~~in----vtl----pd~k~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 553 SFKKFDVKFLICTDVAARGLDITGLPFMIN----VTL----PDDKTNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred hhhhcCeEEEEEehhhhccccccCCceEEE----Eec----Ccccchhhhhhhccchhh--hcceeEEEeec
Confidence 599999999999999999999999999999 666 888899999999999999 99999987764
No 88
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=3.1e-07 Score=89.68 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=54.5
Q ss_pred ccccC-CccEEEechhhhcccCCCCceEEEccCcccCCCCCCCC-CHHHHHHhhcccCCCCCCCc-----eEEEEeecCC
Q psy2759 8 ELDVF-QKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDL-NPAEYIQMAGRAGRRGLDES-----GTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g-~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~-~~~~y~q~~GRAGR~g~d~~-----G~~i~l~~~~ 80 (229)
+|++| .+++||+|+++..|||+|..++||. +++ |. +..+|+||+||++|.+.+.. ...+.++..+
T Consensus 536 ~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~----~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 536 NFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISS----HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHhCCCccEEEEecccccccCCCCCCEEEE----eCC----CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 47764 8999999999999999999999999 887 64 89999999999999984432 2336666665
Q ss_pred Cc
Q psy2759 81 LP 82 (229)
Q Consensus 81 ~~ 82 (229)
..
T Consensus 608 T~ 609 (732)
T TIGR00603 608 TQ 609 (732)
T ss_pred ch
Confidence 43
No 89
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.42 E-value=2e-07 Score=88.03 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=46.0
Q ss_pred cccCCccEEEec-hhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCC
Q psy2759 9 LDVFQKQILFAT-ETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGL 67 (229)
Q Consensus 9 F~~g~ikvLvaT-~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~ 67 (229)
|++|...||||| +.+++|+|+|.+++||. +++ +-+...|+||+||++|.+.
T Consensus 390 ~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p----~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 390 AEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHP----SKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HhCCCCeEEEEEcceeccccccccccEEEE----ecC----CcchhhhhhhhhccccCCC
Confidence 678889999999 89999999999999998 776 6788899999999999984
No 90
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.39 E-value=4.6e-07 Score=92.84 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=53.0
Q ss_pred cCCccEEEechhhhcccCCCCceEEEcc----CcccCCCC------CCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDS----TRKYDGSE------RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~----~~~~d~~~------~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|..+|||||++++.||++|.+++||+. ...||... ..|+|..+|.||+|||||.+ .|.|+.++++
T Consensus 335 ~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte 410 (1294)
T PRK11131 335 HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSE 410 (1294)
T ss_pred cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCH
Confidence 5788999999999999999999999983 22344321 12456789999999999995 7999988864
No 91
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=2e-06 Score=85.68 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=53.4
Q ss_pred ccccCCccEEEechhhhcccCCCC---ce-----EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPA---RT-----VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa---~~-----vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|+.+...|+|||+.++||+|++- +. +||. ++. |-+...|.|+.|||||.| ..|.++.+++.
T Consensus 641 a~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----ter----hes~Rid~Ql~GRtGRqG--dpGsS~ffvSl 710 (1025)
T PRK12900 641 AEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SER----HESRRIDRQLRGRAGRQG--DPGESVFYVSL 710 (1025)
T ss_pred HhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCC----CchHHHHHHHhhhhhcCC--CCcceEEEech
Confidence 378889999999999999999993 32 2355 444 778889999999999999 99999999886
Q ss_pred CC
Q psy2759 80 EL 81 (229)
Q Consensus 80 ~~ 81 (229)
++
T Consensus 711 eD 712 (1025)
T PRK12900 711 ED 712 (1025)
T ss_pred hH
Confidence 54
No 92
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.32 E-value=1.3e-06 Score=85.99 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=55.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
+|++|.++++|||+++..|||+-.+..||+ +.. |.+.+-++||+||||.+-. ..+..++++.+
T Consensus 299 ~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~S----P~sV~r~lQRiGRsgHr~~-~~Skg~ii~~~ 361 (814)
T COG1201 299 RLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGS----PKSVNRFLQRIGRAGHRLG-EVSKGIIIAED 361 (814)
T ss_pred HHhcCCceEEEEccchhhccccCCceEEEE----eCC----cHHHHHHhHhccccccccC-CcccEEEEecC
Confidence 489999999999999999999999999999 998 9999999999999998753 45666666655
No 93
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.32 E-value=7.1e-07 Score=88.23 Aligned_cols=44 Identities=25% Similarity=0.107 Sum_probs=37.3
Q ss_pred ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD 68 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d 68 (229)
.+|||||+++++|||++. .+||+ +.. +.+.|+||+||+||.|..
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~----d~a------P~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVC----DLA------PFESMQQRFGRVNRFGEL 380 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEE----CCC------CHHHHHHHhcccCCCCCC
Confidence 789999999999999998 56666 444 368999999999999943
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.29 E-value=1.3e-06 Score=83.73 Aligned_cols=65 Identities=26% Similarity=0.372 Sum_probs=57.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|+++|||||++...|||+|+.+++|- .|.+ -+..+...|.-||.||-+ ..+.|+++++++.
T Consensus 528 ~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AE---RFGLaQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 528 AFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAE---RFGLAQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred HHHcCCCcEEEEeeEEEecccCCCCeEEEE----echh---hhhHHHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 499999999999999999999999998665 5542 257799999999999999 8999999998765
No 95
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.27 E-value=1.4e-06 Score=89.58 Aligned_cols=64 Identities=23% Similarity=0.363 Sum_probs=51.6
Q ss_pred CccEEEechhhhcccCCCCceEEEccC----cccCCC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 13 QKQILFATETFAMGVNMPARTVAFDST----RKYDGS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin~pa~~vVi~~~----~~~d~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
..+||+||++++.||++|.+++||+.- ..||.. ...++|-++|.||+|||||.| .|.|+-+.+.
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 469999999999999999999999831 224332 123567799999999999998 8999988764
No 96
>KOG0337|consensus
Probab=98.20 E-value=7.5e-07 Score=81.00 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=60.4
Q ss_pred ccccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 6 PFELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 6 ~~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
-.+|..++-.+||.|+.+++|+|+|-..-||+ ||. |.++.-|.||+||+.|+| +.|.++-++.+.
T Consensus 304 ~~~F~~~k~~~lvvTdvaaRG~diplldnvin----yd~----p~~~klFvhRVgr~arag--rtg~aYs~V~~~ 368 (529)
T KOG0337|consen 304 GRDFRGRKTSILVVTDVAARGLDIPLLDNVIN----YDF----PPDDKLFVHRVGRVARAG--RTGRAYSLVAST 368 (529)
T ss_pred cccccCCccceEEEehhhhccCCCcccccccc----ccC----CCCCceEEEEecchhhcc--ccceEEEEEecc
Confidence 46799999999999999999999999999999 999 999999999999999999 999999777653
No 97
>KOG4150|consensus
Probab=97.88 E-value=1.9e-05 Score=74.60 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=52.2
Q ss_pred cCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|.+.-++||+++..|||+-....|++ ... |++..+++|.+|||||+. +.+.++.++..
T Consensus 581 ~G~L~giIaTNALELGIDIG~LDAVl~----~GF----P~S~aNl~QQ~GRAGRRN--k~SLavyva~~ 639 (1034)
T KOG4150|consen 581 GGKLCGIIATNALELGIDIGHLDAVLH----LGF----PGSIANLWQQAGRAGRRN--KPSLAVYVAFL 639 (1034)
T ss_pred CCeeeEEEecchhhhccccccceeEEE----ccC----chhHHHHHHHhccccccC--CCceEEEEEec
Confidence 588999999999999999999999999 887 999999999999999999 55666655544
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.86 E-value=2.2e-05 Score=79.31 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=54.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|-+|+.+|||||+...=|||+|..+.+|- .+.. -+..++..|+-||.||.. ..|+|++++.+.
T Consensus 850 ~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD---~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~ 913 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIETGIDIPNANTIII----ERAD---KFGLAQLYQLRGRVGRSN--KQAYAYFLYPPQ 913 (1139)
T ss_pred HHHcCCCCEEEEeeeeecCcCCCCCceEEE----eccc---cccHHHHHHhccccCCcc--ceEEEEEeecCc
Confidence 589999999999999999999998876554 3331 256799999999999999 999999998864
No 99
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.79 E-value=3.6e-05 Score=75.36 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=57.4
Q ss_pred ccccccCCccEEEechhhhcccCCCCceE--EEccCcccCCCCCCC--CCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 6 PFELDVFQKQILFATETFAMGVNMPARTV--AFDSTRKYDGSERRD--LNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 6 ~~~F~~g~ikvLvaT~t~a~Gin~pa~~v--Vi~~~~~~d~~~~rp--~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.-.|.+|+++|||-|..++.|.|+|+++. |++........++|- -+..-+.|-+|||||.+ ..|.+++.+...+
T Consensus 527 l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~ 604 (730)
T COG1198 527 LDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPD 604 (730)
T ss_pred HHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCC
Confidence 34699999999999999999999999985 444322233334443 35678899999999999 8899999988743
No 100
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.77 E-value=1.8e-05 Score=79.11 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=55.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCC-CHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDL-NPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~-~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++++++|+++-.|||+-+...||. +.. |. +..+++|++|||||++ ..+.++++...
T Consensus 359 ~~~~g~~~~~~st~AlelgidiG~ldavi~----~g~----P~~s~~~~~Q~~GRaGR~~--~~~l~~~v~~~ 421 (851)
T COG1205 359 EFKEGELLGVIATNALELGIDIGSLDAVIA----YGY----PGVSVLSFRQRAGRAGRRG--QESLVLVVLRS 421 (851)
T ss_pred HHhcCCccEEecchhhhhceeehhhhhHhh----cCC----CCchHHHHHHhhhhccCCC--CCceEEEEeCC
Confidence 489999999999999999999999999998 665 76 8899999999999999 77777777663
No 101
>PRK14701 reverse gyrase; Provisional
Probab=97.75 E-value=9.1e-06 Score=85.76 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=46.2
Q ss_pred ccccCCccEEEech----hhhcccCCCC-ceEEEccCcccCCCCCCCCCHHHHHHh-------------hcccCCCCCCC
Q psy2759 8 ELDVFQKQILFATE----TFAMGVNMPA-RTVAFDSTRKYDGSERRDLNPAEYIQM-------------AGRAGRRGLDE 69 (229)
Q Consensus 8 ~F~~g~ikvLvaT~----t~a~Gin~pa-~~vVi~~~~~~d~~~~rp~~~~~y~q~-------------~GRAGR~g~d~ 69 (229)
+|++|+++|||||+ +++||||+|. ++.||+ |+...++ ++...|.|- .|||||.| .
T Consensus 373 ~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~----~~~Pk~~-~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~ 445 (1638)
T PRK14701 373 LFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF----YGVPKFR-FRVDLEDPTIYRILGLLSEILKIEEELKEG--I 445 (1638)
T ss_pred HHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE----eCCCCCC-cchhhcccchhhhhcchHHHHHhhhhcccC--C
Confidence 59999999999995 8899999998 899998 8884332 355555554 59999999 4
Q ss_pred ceEEE
Q psy2759 70 SGTVI 74 (229)
Q Consensus 70 ~G~~i 74 (229)
.+.++
T Consensus 446 ~~~~~ 450 (1638)
T PRK14701 446 PIEGV 450 (1638)
T ss_pred cchhH
Confidence 44443
No 102
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.64 E-value=7.6e-05 Score=76.97 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=27.1
Q ss_pred ccccCCccEEEe----chhhhcccCCCC-ceEEEc
Q psy2759 8 ELDVFQKQILFA----TETFAMGVNMPA-RTVAFD 37 (229)
Q Consensus 8 ~F~~g~ikvLva----T~t~a~Gin~pa-~~vVi~ 37 (229)
.|++|+++|||| |++++||||+|. +++||+
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 599999999999 489999999999 687776
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.60 E-value=7.8e-05 Score=76.54 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=45.6
Q ss_pred ccccCCc-cEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCC
Q psy2759 8 ELDVFQK-QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRG 66 (229)
Q Consensus 8 ~F~~g~i-kvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g 66 (229)
+|+++.. +|+|+++.++.|+|+|.+.+|+. ++. +.|...|+||+||+.|.-
T Consensus 750 ~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf----~rp----vkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 750 RFKNERLPNIVVTVDLLTTGIDVPSICNLVF----LRR----VRSRILYEQMLGRATRLC 801 (1123)
T ss_pred HHhCCCCCeEEEEecccccCCCcccccEEEE----ecC----CCCHHHHHHHHhhhccCC
Confidence 4788887 69999999999999999998887 776 789999999999999975
No 104
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00011 Score=68.55 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=45.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRR 65 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~ 65 (229)
+|+.|.+++||++..+..|+|+|+..++|. -.+ .-++..|.||+||.=|.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----~~~----t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLII----LRP----TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEE----eCC----CCcHHHHHHHhhhhccC
Confidence 489989999999999999999999999997 555 67899999999999994
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.55 E-value=0.00044 Score=70.37 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=52.4
Q ss_pred CccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 13 QKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
..-+|++|.+.+.|||+...++||. ||. +.+|....|.+|||-|.|..+.=.++-++..+
T Consensus 540 ~~VfLLSTrAGGlGINLt~Ad~VIi----yD~----dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 540 KFVFLLSTRAGGLGINLATADIVIL----YDS----DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ceEEEEeccccccCCchhhCCEEEE----eCC----CCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 3467999999999999999999999 999 99999999999999999987766666666554
No 106
>PRK09694 helicase Cas3; Provisional
Probab=97.30 E-value=0.00037 Score=69.92 Aligned_cols=47 Identities=17% Similarity=0.052 Sum_probs=38.2
Q ss_pred ccCC---ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCC
Q psy2759 10 DVFQ---KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGL 67 (229)
Q Consensus 10 ~~g~---ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~ 67 (229)
++|+ .+|||||+++.+|||++ ..++|+ ... +...++||+||+||.+.
T Consensus 615 k~g~r~~~~ILVaTQViE~GLDId-~DvlIt----dla------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 615 KNGKRNQGRILVATQVVEQSLDLD-FDWLIT----QLC------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred hcCCcCCCeEEEECcchhheeecC-CCeEEE----CCC------CHHHHHHHHhccCCCCC
Confidence 4555 47999999999999996 478887 333 46799999999999985
No 107
>PRK09401 reverse gyrase; Reviewed
Probab=97.22 E-value=0.00013 Score=75.29 Aligned_cols=53 Identities=11% Similarity=0.029 Sum_probs=43.5
Q ss_pred cccccCCccEEEe----chhhhcccCCCC-ceEEEccCcccCCCCCCC--CCHHHHHHhhcccC
Q psy2759 7 FELDVFQKQILFA----TETFAMGVNMPA-RTVAFDSTRKYDGSERRD--LNPAEYIQMAGRAG 63 (229)
Q Consensus 7 ~~F~~g~ikvLva----T~t~a~Gin~pa-~~vVi~~~~~~d~~~~rp--~~~~~y~q~~GRAG 63 (229)
-+|++|+++|||| |++++||||+|. ++.||+ |+...++- -....|.|+.||+-
T Consensus 370 ~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~----y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 370 EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF----YGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE----eCCCCEEEeccccccCHHHHHHHH
Confidence 3699999999999 689999999999 799999 99833221 14678999999985
No 108
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0021 Score=60.62 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=52.7
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCC--CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGS--ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~--~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.+.|.++|||--+.+-.|+|+|-++.|-- +|.. ++ .-+-...+|-+|||.|.- .|.||++++.
T Consensus 492 LR~G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN~---~GkvIlYAD~ 556 (663)
T COG0556 492 LRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNV---NGKVILYADK 556 (663)
T ss_pred HhcCCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhcc---CCeEEEEchh
Confidence 57899999999999999999999997655 5542 22 457788999999999985 8999999875
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.97 E-value=0.0017 Score=64.63 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=48.8
Q ss_pred ccccCCccEEEechhhhcccCCCCc------------------------------eEEEccCcccCC----CCCCCCCHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPAR------------------------------TVAFDSTRKYDG----SERRDLNPA 53 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~------------------------------~vVi~~~~~~d~----~~~rp~~~~ 53 (229)
.|+.+...|+|||+.++||+|++-- .-|.. ..| ...|+-+.-
T Consensus 473 a~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~GGLhVigTerhesrR 548 (830)
T PRK12904 473 AQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLE----AGGLHVIGTERHESRR 548 (830)
T ss_pred HhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHH----cCCCEEEecccCchHH
Confidence 4788999999999999999999864 10000 111 012345555
Q ss_pred HHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 54 EYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 54 ~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
-=-|..|||||.| +.|.+-.+.+-++
T Consensus 549 id~QlrGRagRQG--dpGss~f~lSleD 574 (830)
T PRK12904 549 IDNQLRGRSGRQG--DPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhcccccCC--CCCceeEEEEcCc
Confidence 5689999999999 8899888876543
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.97 E-value=0.00071 Score=66.93 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=50.3
Q ss_pred ccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 10 DVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 10 ~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+.+.-.|+|||.+...|||+. ..++|++ +.++...+||+||.+|.|.+..|.+++....+
T Consensus 491 ~~~~~~IvVaTQVIEagvDid-fd~mITe----------~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 491 KQNEGFIVVATQVIEAGVDID-FDVLITE----------LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred hccCCeEEEEeeEEEEEeccc-cCeeeec----------CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 667889999999999999986 5566651 55778899999999999988889998887654
No 111
>KOG0922|consensus
Probab=96.93 E-value=0.0013 Score=63.12 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=54.4
Q ss_pred cCCccEEEechhhhcccCCCCceEEEcc----CcccCCC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDS----TRKYDGS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~----~~~~d~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|.=||++||+++.--|-+|.+.+||.+ .++|+.. ...|+|-..-.||+|||||.| .|.++=+...
T Consensus 314 ~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte 389 (674)
T KOG0922|consen 314 PGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTE 389 (674)
T ss_pred CCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeH
Confidence 4778999999999999999999999975 3445553 134678899999999999998 8999987764
No 112
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0011 Score=66.22 Aligned_cols=63 Identities=30% Similarity=0.498 Sum_probs=51.0
Q ss_pred ccEEEechhhhcccCCCCceEEEcc----CcccCCC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDS----TRKYDGS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~----~~~~d~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
=||++||+++.=+|-+|.+++||.+ ...|+.. ...|++-.+..||+|||||-+ .|+|+=+.++
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse 386 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSE 386 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCH
Confidence 4599999999999999999999965 2335543 133577899999999999997 8999977654
No 113
>KOG0924|consensus
Probab=96.68 E-value=0.004 Score=60.32 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=53.1
Q ss_pred ccCCccEEEechhhhcccCCCCceEEEcc-C---cccCCC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 10 DVFQKQILFATETFAMGVNMPARTVAFDS-T---RKYDGS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 10 ~~g~ikvLvaT~t~a~Gin~pa~~vVi~~-~---~~~d~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
..|.=|++|||+.+.-.+-+|.+..||.. . +-|+.+ ...|++-.+-.||+|||||.| .|.|+-++..
T Consensus 620 ~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe 696 (1042)
T KOG0924|consen 620 EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTE 696 (1042)
T ss_pred CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhh
Confidence 46778999999999999999999999952 2 223332 244678888999999999998 8999987765
No 114
>KOG0923|consensus
Probab=96.26 E-value=0.0067 Score=58.60 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=51.7
Q ss_pred cCCccEEEechhhhcccCCCCceEEEccC----cccCCC-C-----CCCCCHHHHHHhhcccCCCCCCCceEEEEeec
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDST----RKYDGS-E-----RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCK 78 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~~----~~~d~~-~-----~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~ 78 (229)
.|.=||++||+.+.-.|-++.+..||..- ..|+.+ + ..|++-..-.||+|||||.| .|.|+-+.+
T Consensus 530 ~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt 604 (902)
T KOG0923|consen 530 PGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYT 604 (902)
T ss_pred CCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeec
Confidence 56779999999999999999999999641 224433 1 23577789999999999998 899997765
No 115
>KOG0926|consensus
Probab=95.89 E-value=0.004 Score=61.30 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=49.8
Q ss_pred cCCccEEEechhhhcccCCCCceEEEcc----CcccCCC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDS----TRKYDGS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~----~~~~d~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|.==++|||+++.-.+-+|.+..||.. .+.||-. ....++-..--||+|||||-| .|+|+-++++
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhh
Confidence 4555579999999999999999999964 3345542 122355566789999999998 8999977653
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.70 E-value=0.062 Score=54.02 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=43.3
Q ss_pred cccCCccEEEechhhhcccCCCCc-------------------------------------eEEEccCcccCCCCCCCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPAR-------------------------------------TVAFDSTRKYDGSERRDLN 51 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~-------------------------------------~vVi~~~~~~d~~~~rp~~ 51 (229)
|+.|. |+|||+.++||.|+.-- -.|| +| .|+-|
T Consensus 495 g~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gT-------erheS 564 (908)
T PRK13107 495 GRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL-GT-------ERHES 564 (908)
T ss_pred CCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE-ec-------ccCch
Confidence 66777 99999999999998522 0233 11 22333
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 52 PAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 52 ~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.--=-|..|||||-| +.|.+-.+.+-++
T Consensus 565 rRID~QLrGRaGRQG--DPGss~f~lSlED 592 (908)
T PRK13107 565 RRIDNQLRGRAGRQG--DAGSSRFYLSMED 592 (908)
T ss_pred HHHHhhhhcccccCC--CCCceeEEEEeCc
Confidence 444479999999999 8899888876543
No 117
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.58 E-value=0.084 Score=53.14 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=43.6
Q ss_pred ccccCCccEEEechhhhcccCCCCc--------------------------------------eEEEccCcccCCCCCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPAR--------------------------------------TVAFDSTRKYDGSERRD 49 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~--------------------------------------~vVi~~~~~~d~~~~rp 49 (229)
.|+.| .|+|||+.++||+|+.-- -.|| +| .|+
T Consensus 489 Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gT-------erh 558 (896)
T PRK13104 489 AGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRII-GS-------ERH 558 (896)
T ss_pred CCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEE-ee-------ccC
Confidence 36778 499999999999998522 0122 11 223
Q ss_pred CCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 50 LNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 50 ~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
-+.--=-|..|||||-| +.|.+-.+.+-++
T Consensus 559 esrRID~QLrGRaGRQG--DPGss~f~lSleD 588 (896)
T PRK13104 559 ESRRIDNQLRGRAGRQG--DPGSSRFYLSLED 588 (896)
T ss_pred chHHHHHHhccccccCC--CCCceEEEEEcCc
Confidence 34444479999999999 8899888876543
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.05 E-value=0.073 Score=53.71 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=46.8
Q ss_pred ccccCCccEEEechhhhcccCCCCce---EEEccCcccCCC-----------------CCC----CCCHHHHHHhhcccC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPART---VAFDSTRKYDGS-----------------ERR----DLNPAEYIQMAGRAG 63 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~---vVi~~~~~~d~~-----------------~~r----p~~~~~y~q~~GRAG 63 (229)
+|++|.-.||+||+.|++|||+|... |||..+-.-... .+. |.....+.|-+||.=
T Consensus 720 ~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlI 799 (850)
T TIGR01407 720 RFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLI 799 (850)
T ss_pred HHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcccc
Confidence 47889999999999999999999755 456554421110 111 112367889999999
Q ss_pred CCCCCCceEEEEe
Q psy2759 64 RRGLDESGTVIIM 76 (229)
Q Consensus 64 R~g~d~~G~~i~l 76 (229)
|...| .|.++++
T Consensus 800 Rs~~D-~G~v~il 811 (850)
T TIGR01407 800 RREND-RGSIVIL 811 (850)
T ss_pred ccCCc-eEEEEEE
Confidence 98755 6765555
No 119
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=94.50 E-value=0.13 Score=52.07 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=43.6
Q ss_pred ccEEEechhhhcccCCCCce--------EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 14 KQILFATETFAMGVNMPART--------VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~--------vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
-.|.|||+.++||-|+.--. +||- -.++-+..--.|..|||||.| ..|.+-.+.+-+
T Consensus 617 g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIg--------Ter~es~Rid~Ql~GRagRQG--dpGss~f~lSlE 681 (970)
T PRK12899 617 GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIG--------TSRHQSRRIDRQLRGRCARLG--DPGAAKFFLSFE 681 (970)
T ss_pred CcEEEeeccccCCcccccCchHHhcCCcEEEe--------eccCchHHHHHHHhcccccCC--CCCceeEEEEcc
Confidence 46899999999999985432 2331 133667777899999999999 899988887654
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=94.41 E-value=0.052 Score=53.32 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=49.3
Q ss_pred cccc-CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCC-CCC-CceEEEEeecC
Q psy2759 8 ELDV-FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRR-GLD-ESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~-g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~-g~d-~~G~~i~l~~~ 79 (229)
+|++ +.+++||+++.+.-|.|.|...+++ .|- |+....++|++||+-|. ..+ +.|.++=++..
T Consensus 585 ~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy-----ldK----plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 585 RFKKEENPKLLIVVDMLLTGFDAPILNTLY-----LDK----PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred HhcCCCCceEEEEEcccccccCCCccceEE-----Eec----cccccHHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 3544 6899999999999999999999888 444 77667799999999993 433 35777766654
No 121
>KOG0920|consensus
Probab=94.41 E-value=0.044 Score=55.20 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=51.0
Q ss_pred ccCCccEEEechhhhcccCCCCceEEEcc----CcccCCCCCC------CCCHHHHHHhhcccCCCCCCCceEEEEeec
Q psy2759 10 DVFQKQILFATETFAMGVNMPARTVAFDS----TRKYDGSERR------DLNPAEYIQMAGRAGRRGLDESGTVIIMCK 78 (229)
Q Consensus 10 ~~g~ikvLvaT~t~a~Gin~pa~~vVi~~----~~~~d~~~~r------p~~~~~y~q~~GRAGR~g~d~~G~~i~l~~ 78 (229)
..|.-||++||+.+.-.|-+|++..||.+ -..||..... +.+-.+-.||.|||||.- .|.|+-+..
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~ 542 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYT 542 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeec
Confidence 35778999999999999999999999964 2235654211 245678899999999984 899986654
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=94.25 E-value=0.45 Score=47.93 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=41.1
Q ss_pred CccEEEechhhhcccCCCCce--------EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 13 QKQILFATETFAMGVNMPART--------VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin~pa~~--------vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.-.|.|||+.++||-|+.--. +||. |. |+-+..-=-|..|||||.| +.|.+-.+.+-+
T Consensus 474 ~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIg-Te-------rheSrRIDnQLrGRaGRQG--DpGss~f~lSLe 539 (925)
T PRK12903 474 KGAITIATNMAGRGTDIKLSKEVLELGGLYVLG-TD-------KAESRRIDNQLRGRSGRQG--DVGESRFFISLD 539 (925)
T ss_pred CCeEEEecccccCCcCccCchhHHHcCCcEEEe-cc-------cCchHHHHHHHhcccccCC--CCCcceEEEecc
Confidence 356899999999999996432 4443 21 1333333459999999999 889888777644
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=94.24 E-value=0.34 Score=47.96 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=42.4
Q ss_pred ccEEEechhhhcccCCCCce---------------EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeec
Q psy2759 14 KQILFATETFAMGVNMPART---------------VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCK 78 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~---------------vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~ 78 (229)
-.|-|||+.++||-|+.--. .||- -.|+-+.--=.|..|||||.| +.|.+-.+.+
T Consensus 476 gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIg--------TerheSrRID~QLrGRaGRQG--DpGss~f~lS 545 (764)
T PRK12326 476 GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIG--------TGRHRSERLDNQLRGRAGRQG--DPGSSVFFVS 545 (764)
T ss_pred CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEe--------ccCCchHHHHHHHhcccccCC--CCCceeEEEE
Confidence 36899999999999985321 2332 123456666789999999999 8898888876
Q ss_pred CCC
Q psy2759 79 EEL 81 (229)
Q Consensus 79 ~~~ 81 (229)
-++
T Consensus 546 leD 548 (764)
T PRK12326 546 LED 548 (764)
T ss_pred cch
Confidence 543
No 124
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.96 E-value=0.12 Score=45.46 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcc----cCCCCCCCCCHHHHHHhhcccCCCCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRK----YDGSERRDLNPAEYIQMAGRAGRRGLD 68 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~----~d~~~~rp~~~~~y~q~~GRAGR~g~d 68 (229)
.|.+|+.+|+|.|++.+-||.+.|-.-+-+.-+. ... |.+....+|..||+-|.|.-
T Consensus 56 ~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~----pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 56 AFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLEL----PWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeC----CCCHHHHHHHhccccccccc
Confidence 4899999999999999999999864222221111 445 88999999999999999954
No 125
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.90 E-value=0.097 Score=42.18 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=39.6
Q ss_pred ccccCCccEEEech--hhhcccCCC---CceEEEccCcccCCCC---------------------CCCCCHHHHHHhhcc
Q psy2759 8 ELDVFQKQILFATE--TFAMGVNMP---ARTVAFDSTRKYDGSE---------------------RRDLNPAEYIQMAGR 61 (229)
Q Consensus 8 ~F~~g~ikvLvaT~--t~a~Gin~p---a~~vVi~~~~~~d~~~---------------------~rp~~~~~y~q~~GR 61 (229)
.|+.+.-.||+|+. .++.|||+| .+.|||.++-.-...+ ..|.......|-+||
T Consensus 54 ~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR 133 (167)
T PF13307_consen 54 EFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGR 133 (167)
T ss_dssp HHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHC
T ss_pred HHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCc
Confidence 36778888999999 999999999 4567776555321110 001113566788999
Q ss_pred cCCCCCCCceEEEEe
Q psy2759 62 AGRRGLDESGTVIIM 76 (229)
Q Consensus 62 AGR~g~d~~G~~i~l 76 (229)
+=|...| .|.++++
T Consensus 134 ~iR~~~D-~g~i~ll 147 (167)
T PF13307_consen 134 LIRSEDD-YGVIILL 147 (167)
T ss_dssp C--STT--EEEEEEE
T ss_pred ceeccCC-cEEEEEE
Confidence 9998754 6666655
No 126
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.69 E-value=0.14 Score=40.36 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=40.8
Q ss_pred cEEEechh--hhcccCCCC---ceEEEccCcccCCCC-------------C--C-------CCCHHHHHHhhcccCCCCC
Q psy2759 15 QILFATET--FAMGVNMPA---RTVAFDSTRKYDGSE-------------R--R-------DLNPAEYIQMAGRAGRRGL 67 (229)
Q Consensus 15 kvLvaT~t--~a~Gin~pa---~~vVi~~~~~~d~~~-------------~--r-------p~~~~~y~q~~GRAGR~g~ 67 (229)
.||+++.. ++.|||+|. +.|||.++-.-.... . . |.....+.|.+||+=|...
T Consensus 49 ~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 49 ALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN 128 (142)
T ss_pred EEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc
Confidence 59999988 999999997 567886655321110 0 0 1123567899999999885
Q ss_pred CCceEEEEe
Q psy2759 68 DESGTVIIM 76 (229)
Q Consensus 68 d~~G~~i~l 76 (229)
| .|.++++
T Consensus 129 D-~g~i~l~ 136 (142)
T smart00491 129 D-YGVVVLL 136 (142)
T ss_pred c-eEEEEEE
Confidence 4 6755554
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.31 E-value=0.37 Score=48.51 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=45.5
Q ss_pred ccccCCccEEEechhhhcccCCC---CceEEEccCcccCCC------------------CCCCC----CHHHHHHhhccc
Q psy2759 8 ELDVFQKQILFATETFAMGVNMP---ARTVAFDSTRKYDGS------------------ERRDL----NPAEYIQMAGRA 62 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~p---a~~vVi~~~~~~d~~------------------~~rp~----~~~~y~q~~GRA 62 (229)
+|+++.-.||++|..|..|||+| ...|||..+- |... .+..+ -.-.+.|-+||.
T Consensus 689 ~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLP-F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRL 767 (820)
T PRK07246 689 RFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLP-FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRT 767 (820)
T ss_pred HHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCC-CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhccc
Confidence 37778788999999999999997 3556776544 2210 01111 135688999999
Q ss_pred CCCCCCCceEEEEe
Q psy2759 63 GRRGLDESGTVIIM 76 (229)
Q Consensus 63 GR~g~d~~G~~i~l 76 (229)
=|...| .|.++++
T Consensus 768 IRs~~D-~Gvv~il 780 (820)
T PRK07246 768 MRREDQ-KSAVLIL 780 (820)
T ss_pred ccCCCC-cEEEEEE
Confidence 988754 7765555
No 128
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.57 E-value=0.3 Score=38.46 Aligned_cols=61 Identities=33% Similarity=0.354 Sum_probs=41.1
Q ss_pred cEEEechhhhcccCCCC---ceEEEccCcccCCC--------------C-CCC-------CCHHHHHHhhcccCCCCCCC
Q psy2759 15 QILFATETFAMGVNMPA---RTVAFDSTRKYDGS--------------E-RRD-------LNPAEYIQMAGRAGRRGLDE 69 (229)
Q Consensus 15 kvLvaT~t~a~Gin~pa---~~vVi~~~~~~d~~--------------~-~rp-------~~~~~y~q~~GRAGR~g~d~ 69 (229)
.||++|..++.|||+|. +.|||.++-.-... . ..+ .....+.|.+||+=|...|
T Consensus 50 ~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D- 128 (141)
T smart00492 50 AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGAND- 128 (141)
T ss_pred EEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCc-
Confidence 69999988999999997 46777765432111 0 112 1246778999999988754
Q ss_pred ceEEEEe
Q psy2759 70 SGTVIIM 76 (229)
Q Consensus 70 ~G~~i~l 76 (229)
.|.++++
T Consensus 129 ~g~i~l~ 135 (141)
T smart00492 129 YGVVVIA 135 (141)
T ss_pred eEEEEEE
Confidence 6765554
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.17 E-value=0.25 Score=50.43 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=45.4
Q ss_pred cccCCccEEEechhhhcccCCCC---ceEEEccCcccCC-C-----------------CCCCC----CHHHHHHhhcccC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPA---RTVAFDSTRKYDG-S-----------------ERRDL----NPAEYIQMAGRAG 63 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa---~~vVi~~~~~~d~-~-----------------~~rp~----~~~~y~q~~GRAG 63 (229)
|+++.=.||++|..|..|||+|. ..|||..+- |.. . .+..+ ..-.+.|-+||.=
T Consensus 800 F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLP-F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlI 878 (928)
T PRK08074 800 FQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLP-FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLI 878 (928)
T ss_pred HHhcCCeEEEecCcccCccccCCCceEEEEEecCC-CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhc
Confidence 66676789999999999999997 456776554 321 0 11111 2456789999999
Q ss_pred CCCCCCceEEEEe
Q psy2759 64 RRGLDESGTVIIM 76 (229)
Q Consensus 64 R~g~d~~G~~i~l 76 (229)
|...| .|.++++
T Consensus 879 Rs~~D-~G~v~il 890 (928)
T PRK08074 879 RTETD-RGTVFVL 890 (928)
T ss_pred ccCCc-eEEEEEe
Confidence 98865 6765554
No 130
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.98 E-value=0.37 Score=47.69 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=44.0
Q ss_pred cccCCccEEEechhhhcccCCCC---ceEEEccCcccCCC-----------------CCC----CCCHHHHHHhhcccCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPA---RTVAFDSTRKYDGS-----------------ERR----DLNPAEYIQMAGRAGR 64 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa---~~vVi~~~~~~d~~-----------------~~r----p~~~~~y~q~~GRAGR 64 (229)
|..|.-.||++|..|..|||+|. ..|||..+-.-... .+. |...-.+.|-+||.=|
T Consensus 581 ~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIR 660 (697)
T PRK11747 581 VDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIR 660 (697)
T ss_pred hccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccc
Confidence 44566779999999999999996 55677655421110 011 1123467899999999
Q ss_pred CCCCCceEEEEe
Q psy2759 65 RGLDESGTVIIM 76 (229)
Q Consensus 65 ~g~d~~G~~i~l 76 (229)
...| .|.++++
T Consensus 661 s~~D-~G~i~il 671 (697)
T PRK11747 661 SEQD-RGRVTIL 671 (697)
T ss_pred cCCc-eEEEEEE
Confidence 8754 6765554
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=91.61 E-value=1.5 Score=44.50 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 49 DLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 49 p~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
+-|.--=-|..|||||-| +.|.+-.+.+-++
T Consensus 562 heSrRID~QLrGRaGRQG--DPGsS~f~lSlED 592 (913)
T PRK13103 562 HESRRIDNQLRGRAGRQG--DPGSSRFYLSLED 592 (913)
T ss_pred CchHHHHHHhccccccCC--CCCceEEEEEcCc
Confidence 444444579999999999 8899988876543
No 132
>KOG0925|consensus
Probab=91.44 E-value=0.31 Score=46.02 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=49.3
Q ss_pred ccEEEechhhhcccCCCCceEEEcc---Cc-ccCCC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDS---TR-KYDGS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~---~~-~~d~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
=||+|+|+.+.-.+-++.+..||.. .+ -|+.+ -.+|++-..-.||+|||||. +.|.++.+..+
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte 386 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTE 386 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecH
Confidence 4899999999999999999999863 12 23332 24578888999999999987 58999988764
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=91.32 E-value=0.23 Score=50.79 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=40.3
Q ss_pred cCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDE 69 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~ 69 (229)
.+...|+|||.+...|+|+..--+|.. +.+....+|++||..|.|...
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~dfd~~~~~-----------~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHDYDWAIAD-----------PSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred cCCCeEEEEeeeEEEEecccCCeeeec-----------cCcHHHHHHHhhcccccccCC
Confidence 367899999999999999877666665 668888999999999988553
No 134
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.29 E-value=0.41 Score=47.14 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=41.4
Q ss_pred cccCCccEEEech----hhhcccCCCCceEEEccCcccCCCCCCC--CCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 9 LDVFQKQILFATE----TFAMGVNMPARTVAFDSTRKYDGSERRD--LNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 9 F~~g~ikvLvaT~----t~a~Gin~pa~~vVi~~~~~~d~~~~rp--~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
|. ++.+|||+|. .++ | +. ...+|++........++|- -...-++|-+|||||.+ +.|.+++..++
T Consensus 468 ~~-~~~~IlVGTqgaepm~~-g-~~-~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~--~~G~V~iq~~p 538 (665)
T PRK14873 468 VD-AGPALVVATPGAEPRVE-G-GY-GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA--DGGQVVVVAES 538 (665)
T ss_pred hc-cCCCEEEECCCCccccc-C-Cc-eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC--CCCEEEEEeCC
Confidence 54 5899999998 555 3 22 2223444222223323332 24567789999999988 88999998644
No 135
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=91.25 E-value=0.75 Score=47.16 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=42.3
Q ss_pred ccEEEechhhhcccCCCCc--------eEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 14 KQILFATETFAMGVNMPAR--------TVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~--------~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
-.|-|||+.++||-|+.-- -+||- | .|+-|..--.|..|||||.| ..|.+-.+.+-+
T Consensus 677 GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIg-T-------erheSrRID~QLrGRaGRQG--DPGsS~f~lSLE 741 (1112)
T PRK12901 677 GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIG-T-------ERHESRRVDRQLRGRAGRQG--DPGSSQFYVSLE 741 (1112)
T ss_pred CcEEEeccCcCCCcCcccchhhHHcCCCEEEE-c-------cCCCcHHHHHHHhcccccCC--CCCcceEEEEcc
Confidence 4688999999999998621 12332 1 23556667789999999999 889988777654
No 136
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=90.86 E-value=0.61 Score=46.53 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=49.1
Q ss_pred ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCC-------CCCceEEEEeecCCCchHHH
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRG-------LDESGTVIIMCKEELPGQEA 86 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g-------~d~~G~~i~l~~~~~~~~~~ 86 (229)
=+|.++-+.+.=|||.|.+..++- +.. -.|...|+||+||+=|.- .|+.-..|+= ...
T Consensus 482 P~IaitvdlL~TGiDvpev~nlVF----~r~----VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifD-------f~~ 546 (875)
T COG4096 482 PRIAITVDLLTTGVDVPEVVNLVF----DRK----VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFD-------FVD 546 (875)
T ss_pred CceEEehhhhhcCCCchheeeeee----hhh----hhhHHHHHHHhcCccccCccccCccccceeEEEEE-------hhh
Confidence 467788889999999998887663 333 468899999999998852 2222222221 233
Q ss_pred HHHHHhcCCCcccchhh
Q psy2759 87 LKKMMLGKQTKLVSQFR 103 (229)
Q Consensus 87 ~~~~~~~~~~~l~S~~~ 103 (229)
..+.+...+.+.+-...
T Consensus 547 ~~~~~~~~~~~~e~~~~ 563 (875)
T COG4096 547 NTEYFEMDPEMREGRVR 563 (875)
T ss_pred hhhhhccCccccccccc
Confidence 45556666666664443
No 137
>KOG0385|consensus
Probab=89.67 E-value=0.57 Score=46.48 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=51.6
Q ss_pred ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.=.|++|.+.+.|||+-+..+||. ||. ..+|..=+|-.-||-|-|..+.=.|+-++....
T Consensus 541 FiFlLSTRAGGLGINL~aADtVIl----yDS----DWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 541 FIFLLSTRAGGLGINLTAADTVIL----YDS----DWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred EEEEEeccccccccccccccEEEE----ecC----CCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 335899999999999999999998 998 888888899999999999877778887776543
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=88.82 E-value=0.43 Score=48.15 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=52.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC-CceEEEEee
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD-ESGTVIIMC 77 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d-~~G~~i~l~ 77 (229)
.|..+..+||---.-++.|||+|+..-||- |++ --+.-+.+|-+||.=|.... +.|.+|+-.
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~p----r~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVIF----FDP----RSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEEE----ecC----chhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 478889999998899999999999998887 888 56788999999999885322 478988764
No 139
>KOG0390|consensus
Probab=87.53 E-value=1.2 Score=44.36 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=54.2
Q ss_pred cCCccE-EEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHHH
Q psy2759 11 VFQKQI-LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALKK 89 (229)
Q Consensus 11 ~g~ikv-LvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~~ 89 (229)
.+..+| |.+|.+-+.|||+-..+-||. ||. +.+|+.=.|-++||-|+|+.+.-+++-+...+..+++.+.+
T Consensus 645 ~~~~~vfLlSsKAgg~GinLiGAsRlil----~D~----dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qr 716 (776)
T KOG0390|consen 645 ESPSFVFLLSSKAGGEGLNLIGASRLIL----FDP----DWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQR 716 (776)
T ss_pred CCCceEEEEecccccCceeecccceEEE----eCC----CCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHH
Confidence 344455 455667789999988777777 998 89999999999999999988888888666666555544433
No 140
>KOG0389|consensus
Probab=83.66 E-value=1.1 Score=44.54 Aligned_cols=76 Identities=21% Similarity=0.266 Sum_probs=55.5
Q ss_pred EEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHHHHHhcCC
Q psy2759 16 ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALKKMMLGKQ 95 (229)
Q Consensus 16 vLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~~~~~~~~ 95 (229)
.|.+|.+-+-|||+-+.++||- ||. .++|-+=.|---||-|.|..+.=.++-+...+.-+ +.+.++ ....
T Consensus 832 FLLSTKAGG~GINLt~An~VIi----hD~----dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE-E~I~~l-A~~K 901 (941)
T KOG0389|consen 832 FLLSTKAGGFGINLTCANTVII----HDI----DFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE-EGILRL-AKTK 901 (941)
T ss_pred EEEeeccCcceecccccceEEE----eec----CCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH-HHHHHH-HHHh
Confidence 5899999999999999998888 888 77777788999999999988777888666554322 233333 3344
Q ss_pred Ccccch
Q psy2759 96 TKLVSQ 101 (229)
Q Consensus 96 ~~l~S~ 101 (229)
..|++.
T Consensus 902 L~Le~~ 907 (941)
T KOG0389|consen 902 LALEAD 907 (941)
T ss_pred hhhhhh
Confidence 444444
No 141
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.42 E-value=2.1 Score=41.73 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=42.8
Q ss_pred cEEEechhhhcccCCCCc---eEEEccCcccCC-----------------CCCC----CCCHHHHHHhhcccCCCCCCCc
Q psy2759 15 QILFATETFAMGVNMPAR---TVAFDSTRKYDG-----------------SERR----DLNPAEYIQMAGRAGRRGLDES 70 (229)
Q Consensus 15 kvLvaT~t~a~Gin~pa~---~vVi~~~~~~d~-----------------~~~r----p~~~~~y~q~~GRAGR~g~d~~ 70 (229)
-++|+|..|+.|||+|.. .|||.+.-.-.. ..+. |.....+.|-+||.=|.- ++.
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~-~D~ 608 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSE-DDR 608 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccC-CCc
Confidence 899999999999999974 567765542111 1111 123578899999998854 457
Q ss_pred eEEEEee
Q psy2759 71 GTVIIMC 77 (229)
Q Consensus 71 G~~i~l~ 77 (229)
|.++++-
T Consensus 609 G~ivllD 615 (654)
T COG1199 609 GVIVLLD 615 (654)
T ss_pred eEEEEec
Confidence 8777663
No 142
>KOG0384|consensus
Probab=81.45 E-value=2.8 Score=43.70 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=49.3
Q ss_pred CccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 13 QKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
..-.|.||.+-+.|||+-+...||- ||. ..+|.+=+|---||-|-|+...=.++=+++.+
T Consensus 752 dFvFLLSTRAGGLGINLatADTVII----FDS----DWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 752 DFVFLLSTRAGGLGINLATADTVII----FDS----DWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ceEEEEecccCcccccccccceEEE----eCC----CCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 4557999999999999977666555 998 88999999999999999977777777666543
No 143
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=74.45 E-value=4.9 Score=39.93 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=52.0
Q ss_pred cccC--CccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 9 LDVF--QKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 9 F~~g--~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
|.++ ..-++++|.+.+.|+|+-...+||. ||. +.++....|-..||-|-|.++.=.++-+...+
T Consensus 757 f~~~~~~~v~lls~kagg~glnLt~a~~vi~----~d~----~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 757 FNADEEEKVFLLSLKAGGLGLNLTGADTVIL----FDP----WWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred hhcCCCCceEEEEecccccceeecccceEEE----ecc----ccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 5553 4455777789999999999999998 998 89999999999999999977666666555544
No 144
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=73.39 E-value=7.7 Score=36.26 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCcccchhhhhHHHHHHHHHhhh
Q psy2759 85 EALKKMMLGKQTKLVSQFRLTYAMILNLMRVSM 117 (229)
Q Consensus 85 ~~~~~~~~~~~~~l~S~~~~~~~~il~~l~~~~ 117 (229)
+.+.+++...|.||.|+|..+..|+||.+...+
T Consensus 40 ~TF~rL~~a~PE~L~s~f~vthaMlLnvl~r~g 72 (461)
T PF12029_consen 40 KTFERLIEAEPEPLTSRFRVTHAMLLNVLARPG 72 (461)
T ss_pred HHHHHHhcCCCCCCccCeeccHHHHHHHHcCCC
Confidence 568889999999999999999999999997543
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=72.74 E-value=5.9 Score=38.93 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=43.1
Q ss_pred CCccEEEechhhhcccCC------C-----CceEEEccCcccCCC------------CCCC-----CCHHHHHHhhcccC
Q psy2759 12 FQKQILFATETFAMGVNM------P-----ARTVAFDSTRKYDGS------------ERRD-----LNPAEYIQMAGRAG 63 (229)
Q Consensus 12 g~ikvLvaT~t~a~Gin~------p-----a~~vVi~~~~~~d~~------------~~rp-----~~~~~y~q~~GRAG 63 (229)
|.-.|||+|..|-.|||+ | -..|||..+- |... +..| ...--+.|-+||.=
T Consensus 521 ~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLP-F~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLI 599 (636)
T TIGR03117 521 GIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAP-FGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLV 599 (636)
T ss_pred CCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCC-CCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCcee
Confidence 578999999999999999 3 3456776544 2221 0111 11345678899999
Q ss_pred CCCCC-CceEEEEee
Q psy2759 64 RRGLD-ESGTVIIMC 77 (229)
Q Consensus 64 R~g~d-~~G~~i~l~ 77 (229)
|...| ..|.++++-
T Consensus 600 R~~~D~~~G~i~ilD 614 (636)
T TIGR03117 600 RHPDMPQNRRIHMLD 614 (636)
T ss_pred ecCCCcCceEEEEEe
Confidence 98876 477666654
No 146
>PRK04333 50S ribosomal protein L14e; Validated
Probab=70.37 E-value=5.9 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=24.7
Q ss_pred hcCCCCcEEEEecCCcccceEEEEEe-cCcc
Q psy2759 196 NAIVPGIVLHIWTLEHRDKLGLLLKV-DHRR 225 (229)
Q Consensus 196 ~~l~~Gr~v~~~~~~~~~~~gi~~~~-~~~~ 225 (229)
+.+.+||||.+..+.....++||+.. +.+.
T Consensus 2 ~~v~~GrvV~~~~Grd~gk~~vIv~i~d~~~ 32 (84)
T PRK04333 2 PAIEVGRVCVKTAGREAGRKCVIVDIIDKNF 32 (84)
T ss_pred CcccccEEEEEeccCCCCCEEEEEEEecCCE
Confidence 45789999999999888899999987 4443
No 147
>KOG0388|consensus
Probab=68.88 E-value=7 Score=38.97 Aligned_cols=58 Identities=29% Similarity=0.352 Sum_probs=46.3
Q ss_pred ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.=.|.+|.+-+.|||+-|...||- ||. ..+|.-=.|-..||-|.|..+.-.|+-+...
T Consensus 1096 FvFLLSTRAGGLGINLTAADTViF----YdS----DWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1096 FVFLLSTRAGGLGINLTAADTVIF----YDS----DWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred EEEEEecccCcccccccccceEEE----ecC----CCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 345899999999999998887777 887 7777777899999999997766666655443
No 148
>KOG1000|consensus
Probab=68.77 E-value=2.4 Score=40.41 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=49.5
Q ss_pred cccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHH
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEA 86 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~ 86 (229)
|.|.+..-=.++.-++.++|+++.+-++|+- -.. +.+|+-.+|---||-|.|....=.++.++..+. ....
T Consensus 538 FQ~seev~VAvlsItA~gvGLt~tAa~~VVF----aEL----~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT-~Ddy 608 (689)
T KOG1000|consen 538 FQTSEEVRVAVLSITAAGVGLTLTAASVVVF----AEL----HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGT-ADDY 608 (689)
T ss_pred hccccceEEEEEEEeecccceeeeccceEEE----EEe----cCCCceEEechhhhhhccccceeeEEEEEecCc-hHHH
Confidence 4444443333556667799999988777664 344 667788888888999998765444555554432 2234
Q ss_pred HHHHHhcC
Q psy2759 87 LKKMMLGK 94 (229)
Q Consensus 87 ~~~~~~~~ 94 (229)
+..++..+
T Consensus 609 ~Wp~l~~K 616 (689)
T KOG1000|consen 609 MWPMLQQK 616 (689)
T ss_pred HHHHHHHH
Confidence 55554443
No 149
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=68.70 E-value=2.7 Score=38.01 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.6
Q ss_pred CCCHHHHHHhhcccC
Q psy2759 49 DLNPAEYIQMAGRAG 63 (229)
Q Consensus 49 p~~~~~y~q~~GRAG 63 (229)
|.++.+|+||+||+|
T Consensus 343 p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHhhhcccCC
Confidence 567899999999998
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.47 E-value=12 Score=37.00 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCccEEEec--hhhhcccCCCC---ceEEEccCcccCCC------------------CCCC----CCHHHHHHhhcccCC
Q psy2759 12 FQKQILFAT--ETFAMGVNMPA---RTVAFDSTRKYDGS------------------ERRD----LNPAEYIQMAGRAGR 64 (229)
Q Consensus 12 g~ikvLvaT--~t~a~Gin~pa---~~vVi~~~~~~d~~------------------~~rp----~~~~~y~q~~GRAGR 64 (229)
|.=.||+|+ -.++.|||+|. +.|||.++-+-... +..+ .....+.|-+||+=|
T Consensus 581 ~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR 660 (705)
T TIGR00604 581 GRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIR 660 (705)
T ss_pred CCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCcccc
Confidence 344599999 88999999996 66788765531110 0000 112456799999999
Q ss_pred CCCCCceEEEEe
Q psy2759 65 RGLDESGTVIIM 76 (229)
Q Consensus 65 ~g~d~~G~~i~l 76 (229)
...| .|.++++
T Consensus 661 ~~~D-~G~iill 671 (705)
T TIGR00604 661 HKDD-YGSIVLL 671 (705)
T ss_pred CcCc-eEEEEEE
Confidence 8755 6765555
No 151
>KOG0387|consensus
Probab=67.94 E-value=8.5 Score=38.59 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=45.5
Q ss_pred cccCC-cc-EEEechhhhcccCCCC-ceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 9 LDVFQ-KQ-ILFATETFAMGVNMPA-RTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 9 F~~g~-ik-vLvaT~t~a~Gin~pa-~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
|.++. +. .|++|.+-+.|+|+-. -+||| ||+ ..+|+.=.|-.-||-|-|..+.=.++-+...
T Consensus 593 Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----fDP----dWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 593 FNEDESIFVFLLTTRVGGLGLNLTGANRVII-----FDP----DWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred hcCCCceEEEEEEecccccccccccCceEEE-----ECC----CCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 55443 33 3789999999999965 45555 898 7888888999999999997655555544443
No 152
>KOG1015|consensus
Probab=63.44 E-value=4.6 Score=41.45 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=45.6
Q ss_pred EEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 16 ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 16 vLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.||+|.+-+.|||+-|.+-||- ||+ ..+|+-=+|-+=|+-|.|....-+++-|...+
T Consensus 1221 ~LISTRAGsLGiNLvAANRVII----fDa----sWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVII----FDA----SWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred EEEeeccCccccceeecceEEE----Eec----ccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 5999999999999987665555 898 77888888999999999977777776554433
No 153
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=59.20 E-value=17 Score=37.00 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred HHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 56 IQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 56 ~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
-|..|||||.| +.|.+-.+.+-++
T Consensus 609 nQLrGRaGRQG--DPG~s~f~lSLED 632 (870)
T CHL00122 609 NQLRGRAGRQG--DPGSSRFFLSLED 632 (870)
T ss_pred HHHhccccCCC--CCCcceEEEEecc
Confidence 68999999999 8898887776543
No 154
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=57.78 E-value=26 Score=18.74 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCcEEEEecCCcccceEEEEEecC
Q psy2759 198 IVPGIVLHIWTLEHRDKLGLLLKVDH 223 (229)
Q Consensus 198 l~~Gr~v~~~~~~~~~~~gi~~~~~~ 223 (229)
+.+|..|.|..+......|+++..+.
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~~ 27 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVDG 27 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence 57899999999988778899988764
No 155
>PRK09401 reverse gyrase; Reviewed
Probab=54.64 E-value=12 Score=39.55 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCHHHHHHhhcccCCC--CCCCceEEEEeecCC
Q psy2759 50 LNPAEYIQMAGRAGRR--GLDESGTVIIMCKEE 80 (229)
Q Consensus 50 ~~~~~y~q~~GRAGR~--g~d~~G~~i~l~~~~ 80 (229)
.+...|+|-+||+.|. |-=..|.++++++++
T Consensus 517 pd~~tYiqasGRtSrl~~gg~t~glsv~l~dd~ 549 (1176)
T PRK09401 517 PDVTTYIQASGRTSRLYAGGLTKGLSVLLVDDE 549 (1176)
T ss_pred cCcchheecccchhcccCCCccceeEEEEecCH
Confidence 5788999999999994 333689999999874
No 156
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=50.39 E-value=38 Score=34.73 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=19.3
Q ss_pred HHhhcccCCCCCCCceEEEEeecCC
Q psy2759 56 IQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 56 ~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
-|.-|||||.| +.|.+-.+.+-+
T Consensus 666 NQLRGRaGRQG--DPGsSrFflSLE 688 (939)
T PRK12902 666 NQLRGRAGRQG--DPGSTRFFLSLE 688 (939)
T ss_pred HHhhcccccCC--CCCcceEEEEec
Confidence 58889999999 899998887643
No 157
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=49.51 E-value=8.7 Score=39.63 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=29.1
Q ss_pred ccccCCccEEEech----hhhcccCCCCce--EEEccCcccCC
Q psy2759 8 ELDVFQKQILFATE----TFAMGVNMPART--VAFDSTRKYDG 44 (229)
Q Consensus 8 ~F~~g~ikvLvaT~----t~a~Gin~pa~~--vVi~~~~~~d~ 44 (229)
.|..|+++|||... ++-+|||+|.+. +||.+.-|+..
T Consensus 378 ~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~rf 420 (1187)
T COG1110 378 DFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFRF 420 (1187)
T ss_pred hhccCceeEEEEecccccceeecCCchhheeEEEEecCCceee
Confidence 49999999999864 689999999754 67776665544
No 158
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=45.15 E-value=38 Score=35.23 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=25.8
Q ss_pred CCHHHHHHhhcccCCC--CCCCceEEEEeecCC
Q psy2759 50 LNPAEYIQMAGRAGRR--GLDESGTVIIMCKEE 80 (229)
Q Consensus 50 ~~~~~y~q~~GRAGR~--g~d~~G~~i~l~~~~ 80 (229)
.+..+|+|-+||+.|. |-=..|.++++++++
T Consensus 527 PD~~TYIQaSGRtSRLyaGglTkGlSvvlvdd~ 559 (1187)
T COG1110 527 PDVRTYIQASGRTSRLYAGGLTKGLSVVLVDDP 559 (1187)
T ss_pred cChhhheeccchHhhhhccccccceEEEEecCH
Confidence 5889999999999994 433689999999874
No 159
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=44.16 E-value=42 Score=19.11 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCcEEEEecCCcccceEEEEEecCcc
Q psy2759 200 PGIVLHIWTLEHRDKLGLLLKVDHRR 225 (229)
Q Consensus 200 ~Gr~v~~~~~~~~~~~gi~~~~~~~~ 225 (229)
+|+.|.+.++......|.|+..+...
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~ 26 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDRSK 26 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEETTT
T ss_pred CCCEEEEeEcCCCCceEEEEEEECCC
Confidence 69999999998888999999886543
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=44.12 E-value=6.9 Score=39.42 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=36.0
Q ss_pred cEEEechhhhcccCCCCce-----------EEEccCcccCCCCCCCCCHHHHH-HhhcccCCCCCCCceEEEEeecC
Q psy2759 15 QILFATETFAMGVNMPART-----------VAFDSTRKYDGSERRDLNPAEYI-QMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 15 kvLvaT~t~a~Gin~pa~~-----------vVi~~~~~~d~~~~rp~~~~~y~-q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
-|-+||+.+++|-|+-.-. .|| +|..+ .+..+- |.-|||||.| ..|.+-.+.+-
T Consensus 479 aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VI-gTERh--------ESRRIDnQLRGRsGRQG--DpG~S~F~lSl 544 (822)
T COG0653 479 AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVI-GTERH--------ESRRIDNQLRGRAGRQG--DPGSSRFYLSL 544 (822)
T ss_pred ccccccccccCCcccccCCCHHHHHHhCCcEEE-ecccc--------hhhHHHHHhhcccccCC--Ccchhhhhhhh
Confidence 3668999999999984322 122 22212 233344 8999999999 78888776653
No 161
>KOG0701|consensus
Probab=42.65 E-value=7.8 Score=41.78 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=45.2
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRG 66 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g 66 (229)
|....+++|++|.++-.|+|.|-..-|+. ++. |..-.+|+|..|||-+.+
T Consensus 350 ~~~~~ln~L~~~~~~~e~~d~~~~~~~~~----~~~----~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 350 FHFHELNLLIATSVLEEGVDVPKCNLVVL----FDA----PTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred HhhhhhhHHHHHHHHHhhcchhhhhhhee----ccC----cchHHHHHHhhcccccch
Confidence 67788999999999999999999998888 888 889999999999997764
No 162
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.72 E-value=1.1e+02 Score=24.36 Aligned_cols=44 Identities=7% Similarity=0.148 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHH
Q psy2759 135 FRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLFENFFDQAKRFFEIRDSYM 185 (229)
Q Consensus 135 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (229)
....++..++.++.++++.+... ++...|..+.++..+..+++.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~q-------DeFAkwaKl~Rk~~kl~~el~ 83 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQ-------DEFAKWAKLNRKLDKLEEELE 83 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TT-------TSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777776555 356667777776666655554
No 163
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=40.22 E-value=60 Score=32.99 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=11.5
Q ss_pred EechhhhcccCCCC
Q psy2759 18 FATETFAMGVNMPA 31 (229)
Q Consensus 18 vaT~t~a~Gin~pa 31 (229)
|+|+....|+|.|.
T Consensus 431 ~~~~~~~e~~d~~~ 444 (814)
T TIGR00596 431 FEIIDEENDIDIYS 444 (814)
T ss_pred ccccccccccccch
Confidence 77887778899887
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=38.39 E-value=85 Score=32.56 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=53.0
Q ss_pred cccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC--CceEEEEeecC
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD--ESGTVIIMCKE 79 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d--~~G~~i~l~~~ 79 (229)
|.++...+++||.++.+-=|-|-|...++. .|- |+-....+|-+.|+.|.-.+ +.|.++-+...
T Consensus 587 ~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-----vDK----~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl 652 (962)
T COG0610 587 FKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-----VDK----PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGL 652 (962)
T ss_pred hcCcCCCCCEEEEEccccccCCccccceEE-----ecc----ccccchHHHHHHHhccCCCCCCCCcEEEECcch
Confidence 456788999999999999999999988776 454 77777899999999996444 68988888774
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=36.14 E-value=41 Score=34.08 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=36.1
Q ss_pred CCccEEEechhhhcccCCCCce--EEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeec
Q psy2759 12 FQKQILFATETFAMGVNMPART--VAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCK 78 (229)
Q Consensus 12 g~ikvLvaT~t~a~Gin~pa~~--vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~ 78 (229)
++.+|++-|++...|+++...- -++. |=-....-.+.-...||+||.-... ....++..+
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~----yvk~~~~gpd~~s~~Q~lgRvR~l~---~~ei~v~~d 386 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFA----YVKPMSYGPDMVSVYQMLGRVRSLL---DNEIYVYID 386 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEE----EecCCCCCCcHHHHHHHHHHHHhhc---cCeEEEEEe
Confidence 4689999999999999986331 1222 2110000134556899999996555 334444443
No 166
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=36.02 E-value=3.1e+02 Score=24.22 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2759 136 RMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLFENFFDQAKRFFEIRDSYMSLVE 189 (229)
Q Consensus 136 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (229)
.++.+......+...++.|... ....++|++...++++..+++..++.
T Consensus 158 wip~~~~~~~~m~~aL~ki~~l------vae~E~l~e~ilkwRe~~ke~~~~~~ 205 (277)
T PF15003_consen 158 WIPNFDENPSNMDKALAKIDAL------VAECEELAEQILKWREQQKEVSSYIP 205 (277)
T ss_pred ccccccccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444555555444332 24567778777777777777765544
No 167
>KOG0386|consensus
Probab=35.40 E-value=34 Score=35.40 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=48.2
Q ss_pred ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
...|.+|..-+.|+|+.....||- ||. ..+|....|.--||-|-|..+.-.++-++.-
T Consensus 780 f~FllstragglglNlQtadtvii----fds----dwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTADTVII----FDS----DWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred eeeeeeecccccccchhhcceEEE----ecC----CCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 356889999999999988777666 998 7899999999999999997777777766543
No 168
>KOG0392|consensus
Probab=33.21 E-value=59 Score=34.60 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=44.5
Q ss_pred ccccC-CccEEEe-chhhhcccCCCC-ceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVF-QKQILFA-TETFAMGVNMPA-RTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g-~ikvLva-T~t~a~Gin~pa-~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|+++ .|+||+- |-+-+.|+|+-. -+|||. +- ..+|-.=+|-.-||-|-|+.+.=.|+-+...+
T Consensus 1388 ~FN~DptIDvLlLTThVGGLGLNLTGADTVVFv-----EH----DWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1388 RFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFV-----EH----DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HhcCCCceeEEEEeeeccccccccCCCceEEEE-----ec----CCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 48888 8999765 567789999964 455553 22 22333338999999999987777777555544
No 169
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=32.76 E-value=58 Score=33.79 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=40.7
Q ss_pred CccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCce
Q psy2759 13 QKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESG 71 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G 71 (229)
.++.+|+-+++..|-|-|.+-++.. ... .-+...-.|.+||.=|.-.|..|
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~----l~~----~~s~~~~~q~~gr~lr~~vnq~G 551 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAK----LRS----SGSETSKLQEVGRGLRLPVDENG 551 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEE----ecc----CCchHHHHHHhccceeccccccC
Confidence 6899999999999999999988887 554 44566779999999886544333
No 170
>PRK14701 reverse gyrase; Provisional
Probab=29.63 E-value=38 Score=37.13 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=25.4
Q ss_pred CCHHHHHHhhcccCCC--CCCCceEEEEeecCC
Q psy2759 50 LNPAEYIQMAGRAGRR--GLDESGTVIIMCKEE 80 (229)
Q Consensus 50 ~~~~~y~q~~GRAGR~--g~d~~G~~i~l~~~~ 80 (229)
.+...|+|-+||+.|. |-=..|.+++++++.
T Consensus 494 pd~~tyiqasgrtsrl~~gg~tkgls~~~~d~~ 526 (1638)
T PRK14701 494 PDVRTYIQASGRTSRLFAGGITKGASVLIVDDP 526 (1638)
T ss_pred cCcccceeccchhhhccCCCcCCceEEEEecCH
Confidence 4788999999999994 333689999999874
No 171
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=27.04 E-value=3.5e+02 Score=28.00 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=40.6
Q ss_pred ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEE
Q psy2759 14 KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTV 73 (229)
Q Consensus 14 ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~ 73 (229)
.+.+|+-.++-.|-|=|.+-+|.. ... .-|-..=.|.+||.=|--.+..|.-
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIck----L~~----S~SeiSK~QeVGRGLRLaVNe~G~R 535 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICK----LRS----SGSEISKLQEVGRGLRLAVNENGER 535 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEE----ecC----CCcchHHHHHhccceeeeeccccce
Confidence 788999999999999999988886 444 3455667999999999655555543
No 172
>COG4709 Predicted membrane protein [Function unknown]
Probab=24.29 E-value=32 Score=28.55 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCc
Q psy2759 143 DLAQLEAKVRQGGEVRQAQDTDVLFENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGI 202 (229)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr 202 (229)
-++++++.++.++..+. .+...+-++||+..++-.+.+.++...+-+|+........-+
T Consensus 6 fL~eL~~yL~~Lp~~~r-~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~ 64 (195)
T COG4709 6 FLNELEQYLEGLPREER-REIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSER 64 (195)
T ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHc
Confidence 45666666666655532 223344556666666665556666666666666544443333
No 173
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=23.32 E-value=2.1e+02 Score=21.34 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=14.2
Q ss_pred cCCCCcEEEEecCC----------cccceEEEE
Q psy2759 197 AIVPGIVLHIWTLE----------HRDKLGLLL 219 (229)
Q Consensus 197 ~l~~Gr~v~~~~~~----------~~~~~gi~~ 219 (229)
-++||++..|..+. ..|+||--.
T Consensus 54 ~f~~G~~Y~i~~~~~~~F~V~ylnGVfAWG~r~ 86 (102)
T PF08838_consen 54 DFRPGEIYRIEGDPEEYFKVDYLNGVFAWGYRQ 86 (102)
T ss_dssp GS-TT-EEEETTCCCEEEEEEEEETTEEEEEET
T ss_pred hccCCCEEEecCCCCceEEEEEEeeEEEEEeec
Confidence 67799999998432 237787655
No 174
>PF02827 PKI: cAMP-dependent protein kinase inhibitor; InterPro: IPR004171 Members of this family are extremely potent competitive inhibitors of cAMP-dependent protein kinase activity. These proteins interact with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.; GO: 0004862 cAMP-dependent protein kinase inhibitor activity, 0006469 negative regulation of protein kinase activity; PDB: 3QAL_I 3QAM_I 3E8C_J 1YDS_I 2UZU_I 3E8E_Q 2UZV_2 2UZT_B 2UZW_I 2GNL_I ....
Probab=23.18 E-value=31 Score=24.22 Aligned_cols=13 Identities=46% Similarity=1.048 Sum_probs=6.9
Q ss_pred HHHHHhhcccCCCC
Q psy2759 53 AEYIQMAGRAGRRG 66 (229)
Q Consensus 53 ~~y~q~~GRAGR~g 66 (229)
.+|+ -+||+||+.
T Consensus 8 ~~Fi-ssgRtGRRN 20 (74)
T PF02827_consen 8 SDFI-SSGRTGRRN 20 (74)
T ss_dssp HHHH-TSSTSS---
T ss_pred HHHH-hcccccccc
Confidence 4444 589999996
No 175
>KOG0298|consensus
Probab=22.03 E-value=36 Score=36.11 Aligned_cols=58 Identities=24% Similarity=0.220 Sum_probs=45.7
Q ss_pred ccE-EEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 14 KQI-LFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 14 ikv-LvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
|++ |+-+...+-|+|+-....||. -++ -++++.-.|-+||.-|.|++..-.|.-+.-+
T Consensus 1267 I~clll~~~~~~~GLNL~eA~Hvfl----~eP----iLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~ 1325 (1394)
T KOG0298|consen 1267 IDCLLLFVSKGSKGLNLIEATHVFL----VEP----ILNPGDEAQAIGRVHRIGQKRPTFVHRFIVN 1325 (1394)
T ss_pred ceEEEEEeccCcccccHHhhhhhhe----ecc----ccCchHHHhhhhhhhhcccccchhhhhhhhc
Confidence 443 566778899999999998887 665 6899999999999999998876666544433
No 176
>KOG1513|consensus
Probab=21.84 E-value=69 Score=32.78 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=50.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCC-ceEEEEee
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDE-SGTVIIMC 77 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~-~G~~i~l~ 77 (229)
+|..|+=.|-|-+++++-||.+.+-+-|++.-++.+..---|.+..--+|..||+-|...-. .-+++++.
T Consensus 852 rFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 852 RFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 58899989999999999999998766555543333322222889999999999999976432 33444443
No 177
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.13 E-value=76 Score=25.57 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHHHHHHHHhc
Q psy2759 144 LAQLEAKVRQG 154 (229)
Q Consensus 144 l~~l~~~~~~~ 154 (229)
+++++..++.+
T Consensus 7 L~~L~~~L~~l 17 (181)
T PF08006_consen 7 LNELEKYLKKL 17 (181)
T ss_pred HHHHHHHHHcC
Confidence 33444444433
No 178
>KOG0391|consensus
Probab=20.84 E-value=1.7e+02 Score=31.53 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=35.1
Q ss_pred cCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCH------HHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNP------AEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~------~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
....-.+.+|-.-+.|||+-....||- ||. ..++ .+-.||||++ +.=+.+-+..+
T Consensus 1326 ~RIfcfILSTrSggvGiNLtgADTVvF----YDs----DwNPtMDaQAQDrChRIGqt------RDVHIYRLISe 1386 (1958)
T KOG0391|consen 1326 RRIFCFILSTRSGGVGINLTGADTVVF----YDS----DWNPTMDAQAQDRCHRIGQT------RDVHIYRLISE 1386 (1958)
T ss_pred CceEEEEEeccCCccccccccCceEEE----ecC----CCCchhhhHHHHHHHhhcCc------cceEEEEeecc
Confidence 344566889999999999976555554 776 4333 5566666655 33455555544
No 179
>KOG0921|consensus
Probab=20.75 E-value=54 Score=33.87 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=46.6
Q ss_pred ccCCccEEEechhhhcccCCCCceEEEccCcccC----CC------CCCCCCHHHHHHhhcccCCCCCCCceEEEEeec
Q psy2759 10 DVFQKQILFATETFAMGVNMPARTVAFDSTRKYD----GS------ERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCK 78 (229)
Q Consensus 10 ~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d----~~------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~ 78 (229)
..|.-|++..|.+..--+-+.++..|+.+..-+- .. .+...+.....|+.|||||. +.|.+.-+|.
T Consensus 697 p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs 772 (1282)
T KOG0921|consen 697 PEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCS 772 (1282)
T ss_pred cccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccccH
Confidence 4588999999999888888888666654432211 00 12345678889999999997 4778877764
Done!