Query psy2759
Match_columns 229
No_of_seqs 245 out of 2116
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:28:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9o_A ATP-dependent RNA helic 100.0 3.1E-35 1.1E-39 295.8 21.4 211 8-224 525-736 (1108)
2 2xgj_A ATP-dependent RNA helic 100.0 6.4E-34 2.2E-38 284.1 21.7 209 8-222 427-636 (1010)
3 4a4z_A Antiviral helicase SKI2 100.0 4.2E-33 1.4E-37 278.0 19.9 216 8-224 420-635 (997)
4 4f92_B U5 small nuclear ribonu 99.8 4.6E-19 1.6E-23 184.6 10.3 119 8-129 1234-1359(1724)
5 4f92_B U5 small nuclear ribonu 99.8 1E-18 3.4E-23 182.0 10.6 121 8-131 399-526 (1724)
6 2zj8_A DNA helicase, putative 99.7 6E-17 2.1E-21 156.3 14.9 124 8-132 315-445 (720)
7 2va8_A SSO2462, SKI2-type heli 99.7 9.3E-17 3.2E-21 154.7 11.3 96 9-104 334-432 (715)
8 2p6r_A Afuhel308 helicase; pro 99.7 1.6E-16 5.3E-21 153.0 10.3 93 9-104 318-411 (702)
9 2hjv_A ATP-dependent RNA helic 99.6 8.4E-15 2.9E-19 116.4 8.1 63 8-80 80-142 (163)
10 3eaq_A Heat resistant RNA depe 99.5 2.7E-14 9.3E-19 118.4 11.3 64 8-81 76-139 (212)
11 2rb4_A ATP-dependent RNA helic 99.5 6E-15 2E-19 118.5 6.8 64 8-81 79-148 (175)
12 1fuk_A Eukaryotic initiation f 99.5 4.5E-15 1.5E-19 118.1 5.6 64 8-81 75-138 (165)
13 2p6n_A ATP-dependent RNA helic 99.5 8.6E-15 2.9E-19 119.9 7.4 80 8-97 99-180 (191)
14 2jgn_A DBX, DDX3, ATP-dependen 99.5 1.1E-14 3.8E-19 118.5 7.5 81 8-98 91-172 (185)
15 1t5i_A C_terminal domain of A 99.5 4.8E-15 1.6E-19 119.1 3.9 63 8-80 76-138 (172)
16 2db3_A ATP-dependent RNA helic 99.5 4.7E-14 1.6E-18 128.5 9.5 84 8-101 345-430 (434)
17 1oyw_A RECQ helicase, ATP-depe 99.5 7.2E-14 2.5E-18 130.6 9.9 62 8-79 281-342 (523)
18 3i32_A Heat resistant RNA depe 99.5 2.1E-13 7.1E-18 119.3 10.8 64 8-81 73-136 (300)
19 3i5x_A ATP-dependent RNA helic 99.5 1.1E-13 3.8E-18 129.2 9.3 64 8-81 387-450 (563)
20 2yjt_D ATP-dependent RNA helic 99.2 1.1E-14 3.7E-19 116.5 0.0 63 8-80 75-137 (170)
21 2v1x_A ATP-dependent DNA helic 99.4 3.3E-13 1.1E-17 128.0 10.0 62 8-79 312-373 (591)
22 2i4i_A ATP-dependent RNA helic 99.4 2.3E-13 8E-18 121.5 7.8 80 8-97 321-401 (417)
23 3oiy_A Reverse gyrase helicase 99.4 2.3E-13 7.8E-18 122.3 7.7 63 8-78 292-363 (414)
24 2z0m_A 337AA long hypothetical 99.4 1.4E-13 4.7E-18 119.1 5.7 62 8-79 261-322 (337)
25 3rc3_A ATP-dependent RNA helic 99.4 4.8E-13 1.6E-17 128.7 8.1 90 8-100 365-462 (677)
26 1s2m_A Putative ATP-dependent 99.4 4.3E-13 1.5E-17 119.3 7.3 63 8-80 303-365 (400)
27 3sqw_A ATP-dependent RNA helic 99.4 9.3E-13 3.2E-17 123.9 9.6 64 8-81 336-399 (579)
28 3pey_A ATP-dependent RNA helic 99.4 6.9E-13 2.4E-17 116.9 8.2 63 8-80 288-356 (395)
29 3fht_A ATP-dependent RNA helic 99.4 7.9E-13 2.7E-17 117.5 8.3 67 8-80 311-379 (412)
30 2j0s_A ATP-dependent RNA helic 99.4 5.5E-13 1.9E-17 119.1 7.0 79 8-96 321-400 (410)
31 1hv8_A Putative ATP-dependent 99.4 1.5E-12 5E-17 113.7 8.5 64 8-81 283-346 (367)
32 1xti_A Probable ATP-dependent 99.3 1.2E-12 4.1E-17 115.7 7.5 63 8-80 295-357 (391)
33 3eiq_A Eukaryotic initiation f 99.3 5.6E-13 1.9E-17 118.8 4.7 64 8-81 325-388 (414)
34 2jlq_A Serine protease subunit 99.3 2.8E-12 9.7E-17 117.5 7.2 66 8-79 229-310 (451)
35 3fmp_B ATP-dependent RNA helic 99.3 2.8E-13 9.7E-18 124.2 0.0 63 8-80 378-446 (479)
36 1fuu_A Yeast initiation factor 99.3 3.2E-13 1.1E-17 119.4 0.0 63 8-80 304-366 (394)
37 3fho_A ATP-dependent RNA helic 99.3 2.1E-12 7.2E-17 119.9 5.4 85 8-98 402-490 (508)
38 1yks_A Genome polyprotein [con 99.3 7.2E-12 2.5E-16 114.6 7.7 63 8-77 218-296 (440)
39 2z83_A Helicase/nucleoside tri 99.2 7.3E-12 2.5E-16 115.1 6.4 66 8-80 231-313 (459)
40 1wp9_A ATP-dependent RNA helic 99.2 8.9E-12 3.1E-16 111.7 6.3 65 8-83 414-478 (494)
41 2whx_A Serine protease/ntpase/ 99.2 2.5E-11 8.6E-16 115.6 7.3 65 8-78 396-476 (618)
42 4a2p_A RIG-I, retinoic acid in 99.2 1.5E-11 5E-16 113.6 4.4 61 8-80 447-508 (556)
43 3tbk_A RIG-I helicase domain; 99.1 1.1E-11 3.9E-16 114.0 2.0 61 8-80 446-507 (555)
44 4gl2_A Interferon-induced heli 99.1 2.8E-11 9.5E-16 115.6 4.3 60 8-79 459-518 (699)
45 2wv9_A Flavivirin protease NS2 99.1 1.1E-10 3.8E-15 112.2 8.5 63 8-77 451-530 (673)
46 1gm5_A RECG; helicase, replica 99.1 4.9E-11 1.7E-15 116.4 5.4 62 8-79 634-696 (780)
47 2v6i_A RNA helicase; membrane, 99.1 5.2E-11 1.8E-15 108.5 5.0 62 8-78 212-289 (431)
48 4a2q_A RIG-I, retinoic acid in 99.1 1.8E-10 6.1E-15 112.4 8.2 61 8-80 688-749 (797)
49 2fwr_A DNA repair protein RAD2 99.1 5.1E-11 1.7E-15 108.8 4.0 66 8-81 389-455 (472)
50 1c4o_A DNA nucleotide excision 99.0 2.2E-10 7.6E-15 110.0 7.0 66 9-81 485-551 (664)
51 4ddu_A Reverse gyrase; topoiso 99.0 1.3E-10 4.6E-15 117.1 5.5 78 8-90 349-501 (1104)
52 2xau_A PRE-mRNA-splicing facto 99.0 2.5E-10 8.4E-15 111.4 5.3 66 11-79 367-442 (773)
53 2d7d_A Uvrabc system protein B 99.0 5.5E-10 1.9E-14 107.2 7.3 66 9-81 491-557 (661)
54 3o8b_A HCV NS3 protease/helica 99.0 3.6E-10 1.2E-14 108.3 5.9 68 9-81 435-515 (666)
55 2ykg_A Probable ATP-dependent 99.0 6.7E-11 2.3E-15 112.9 0.7 61 8-80 455-516 (696)
56 2eyq_A TRCF, transcription-rep 98.9 3.8E-09 1.3E-13 107.0 12.3 64 8-80 859-922 (1151)
57 1tf5_A Preprotein translocase 98.9 6.6E-09 2.2E-13 101.3 13.4 62 8-81 477-546 (844)
58 2oca_A DAR protein, ATP-depend 98.9 1.7E-10 5.8E-15 106.3 2.0 52 8-67 392-444 (510)
59 1gku_B Reverse gyrase, TOP-RG; 98.9 6.6E-10 2.3E-14 111.6 5.8 33 8-44 314-351 (1054)
60 4a2w_A RIG-I, retinoic acid in 98.9 4.1E-10 1.4E-14 111.8 4.0 61 8-80 688-749 (936)
61 3dmq_A RNA polymerase-associat 98.9 3.2E-09 1.1E-13 105.8 8.0 75 8-91 549-625 (968)
62 1z5z_A Helicase of the SNF2/RA 98.8 2E-09 6.7E-14 92.6 4.1 65 8-80 158-224 (271)
63 3jux_A Protein translocase sub 98.8 4.3E-09 1.5E-13 101.3 6.6 59 13-81 522-588 (822)
64 3h1t_A Type I site-specific re 98.7 7.4E-09 2.5E-13 97.3 5.7 52 8-67 491-545 (590)
65 1z63_A Helicase of the SNF2/RA 98.7 1.3E-08 4.4E-13 93.4 6.2 79 8-95 387-467 (500)
66 2fsf_A Preprotein translocase 98.7 1.4E-08 4.7E-13 99.0 6.0 63 7-81 485-584 (853)
67 1nkt_A Preprotein translocase 98.6 2.7E-07 9.2E-12 90.4 12.2 63 7-81 504-618 (922)
68 1z3i_X Similar to RAD54-like; 98.4 3.8E-07 1.3E-11 87.1 8.3 65 8-80 461-528 (644)
69 3mwy_W Chromo domain-containin 98.3 1.1E-06 3.8E-11 85.8 8.4 66 8-81 617-685 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 5.4E-07 1.9E-11 90.3 5.8 63 8-79 644-708 (1038)
71 2vl7_A XPD; helicase, unknown 95.0 0.022 7.5E-07 52.9 5.1 61 9-76 425-518 (540)
72 2ipc_A Preprotein translocase 87.0 4.5 0.00015 40.1 11.0 32 47-80 667-698 (997)
73 3j21_5 50S ribosomal protein L 77.0 1.7 5.8E-05 30.2 2.8 31 196-226 2-33 (83)
74 3crv_A XPD/RAD3 related DNA he 76.1 3.4 0.00012 38.0 5.5 61 15-76 439-528 (551)
75 4a15_A XPD helicase, ATP-depen 72.1 2.7 9.1E-05 39.6 3.7 63 12-76 493-581 (620)
76 2joy_A 50S ribosomal protein L 71.4 3 0.0001 29.7 3.0 31 196-226 2-33 (96)
77 3izc_N 60S ribosomal protein R 65.4 5.1 0.00017 30.5 3.3 28 194-221 11-38 (138)
78 2do3_A Transcription elongatio 35.2 37 0.0013 22.5 3.3 35 192-226 12-46 (69)
79 1cmk_I CAMP-dependent protein 34.3 10 0.00036 20.2 0.4 9 58-66 8-16 (26)
80 3hgt_A HDA1 complex subunit 3; 27.6 74 0.0025 27.4 4.9 60 13-80 170-237 (328)
81 1sf9_A YFHH hypothetical prote 24.0 2.2E+02 0.0075 21.0 6.3 21 186-210 72-92 (128)
82 2k1g_A Lipoprotein SPR; soluti 22.4 77 0.0026 23.5 3.5 26 195-220 65-90 (135)
No 1
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=295.76 Aligned_cols=211 Identities=34% Similarity=0.507 Sum_probs=194.7
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|++|.++|||||+++++|||+|++++||+...+|++..++|+++.+|+||+|||||.|.|..|.+++++.+.. ....+
T Consensus 525 ~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~-~~~~~ 603 (1108)
T 3l9o_A 525 LFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM-EPQVA 603 (1108)
T ss_dssp HHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC-CHHHH
T ss_pred HHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc-CHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999998763 34578
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLF 167 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 167 (229)
.+++.+.+.|+.|+|..+|+|++|+++.+...+++++++||.+|+....++.++++++++++++..+... ...++
T Consensus 604 ~~l~~~~~~~L~S~f~~~y~~ilnll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 678 (1108)
T 3l9o_A 604 KGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVE-----DEENV 678 (1108)
T ss_dssp HHHHHCCCCCCCCCCCCCHHHHHHHHHSTTCCHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-----THHHH
T ss_pred HHHhcCCCcccccccCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccC-----chhhH
Confidence 8899999999999999999999999998888899999999999999999999999999999999887653 55899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCcEEEEecC-CcccceEEEEEecCc
Q psy2759 168 ENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGIVLHIWTL-EHRDKLGLLLKVDHR 224 (229)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~~-~~~~~~gi~~~~~~~ 224 (229)
.+|+++++++.+.++.+...+.++.+++++|+|||||.|+++ +.+++||||+++.++
T Consensus 679 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~v~~~~~~ 736 (1108)
T 3l9o_A 679 KEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKR 736 (1108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCTTEEEEECCTTCCEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHhhCCCCCEEEEecCCCcccceEEEEecccc
Confidence 999999999999999999999999999999999999999998 778999999998543
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-34 Score=284.08 Aligned_cols=209 Identities=34% Similarity=0.501 Sum_probs=193.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|++|.++|||||+++++|||+|++++||+++.+||+..++|.++.+|+||+|||||.|.|..|.|++++.+.. +...+
T Consensus 427 ~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~-e~~~~ 505 (1010)
T 2xgj_A 427 LFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM-EPQVA 505 (1010)
T ss_dssp HHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC-CHHHH
T ss_pred HHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC-CHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999998999999998653 34567
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLF 167 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 167 (229)
.+++.+.+.|+.|+|..+|++++|++......+++++.++|.+|+.....+.++.++.+++..+..+...+ ..++
T Consensus 506 ~~l~~~~~~~l~s~f~~~~~~ilnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~ 580 (1010)
T 2xgj_A 506 KGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVED-----EENV 580 (1010)
T ss_dssp HHHHSCCCCCCCCCCCCCHHHHHHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCS-----CTHH
T ss_pred HHHHhCCCcccccccCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-----hhhH
Confidence 88889999999999999999999999988888999999999999999999999999999999999887663 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCcEEEEec-CCcccceEEEEEec
Q psy2759 168 ENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGIVLHIWT-LEHRDKLGLLLKVD 222 (229)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~-~~~~~~~gi~~~~~ 222 (229)
.+|+++++++...++++..++.++.+++++|+|||||.++. ++.+++||||+++.
T Consensus 581 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~~~v~~~~~ 636 (1010)
T 2xgj_A 581 KEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFA 636 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHGGGCCTTEEEEEEETTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhcCCCcEEEEEcCCCCcceeEEEEecc
Confidence 99999999999999999999999999999999999999999 67789999999874
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.2e-33 Score=277.96 Aligned_cols=216 Identities=36% Similarity=0.520 Sum_probs=187.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|.+|.++|||||+++++|||+|+++||+.+..+||+..++|+++.+|+||+|||||+|.|..|.+++++.++..+...+
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHH
T ss_pred HHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999996544556778
Q ss_pred HHHHhcCCCcccchhhhhHHHHHHHHHhhhhcHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHhcccccccCCchHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQLEAKVRQGGEVRQAQDTDVLF 167 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~~~il~~l~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 167 (229)
.+++.+.+.++.|+|.++|+|++|+++.....++++++++|.+|+........++.+..+++++..+....|..|. .++
T Consensus 500 ~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c~-~~~ 578 (997)
T 4a4z_A 500 KEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICD-NDI 578 (997)
T ss_dssp HHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcccccc-ccH
Confidence 8889999999999999999999999998889999999999999999999999999999999999877766553332 688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHhhcCCCCcEEEEecCCcccceEEEEEecCc
Q psy2759 168 ENFFDQAKRFFEIRDSYMSLVEKTAEFKNAIVPGIVLHIWTLEHRDKLGLLLKVDHR 224 (229)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~gi~~~~~~~ 224 (229)
.+|++++.++.+.+.++...+.++..++++|+|||||.|++++.+++||||+++...
T Consensus 579 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~v~~~~~~ 635 (997)
T 4a4z_A 579 EKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVSLK 635 (997)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTSTTHHHHTCTTEEEEEECTTCCEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHhHHhhCCCCCEEEEecCCCCeeEEEEEeeccC
Confidence 999999999999999888888888889999999999999998767899999997543
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.77 E-value=4.6e-19 Score=184.55 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=98.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCC--CCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSER--RDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~--rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
.|++|.++|||||+|+|+|||+|+++|||.++++||++.+ .|+++.+|+||+|||||+|.|..|.++++|.+.. +
T Consensus 1234 lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~---~ 1310 (1724)
T 4f92_B 1234 LFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK---K 1310 (1724)
T ss_dssp HHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG---H
T ss_pred HHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH---H
Confidence 4899999999999999999999999999999999999754 4689999999999999999999999999998765 6
Q ss_pred HHHHHHhcCCCcccchhhhhHHHHHHHHH-hhh----hcHHHHHHhhHH
Q psy2759 86 ALKKMMLGKQTKLVSQFRLTYAMILNLMR-VSM----VNVEEMMSMSFK 129 (229)
Q Consensus 86 ~~~~~~~~~~~~l~S~~~~~~~~il~~l~-~~~----~~~e~~~~~sf~ 129 (229)
.+++.+.+.+.|++|.+.......++..- .+. .+..+++..+|.
T Consensus 1311 ~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl 1359 (1724)
T 4f92_B 1311 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFL 1359 (1724)
T ss_dssp HHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSH
T ss_pred HHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHH
Confidence 77888899999999999877666555432 222 223455555554
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=1e-18 Score=182.04 Aligned_cols=121 Identities=26% Similarity=0.330 Sum_probs=97.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCC--CCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSE--RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~--~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
.|++|.++|||||+|+|+|||+|+++|||.+++.|++.. ..|+++.+|+||+|||||+|+|..|.+|+++.+++ .
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~---~ 475 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE---L 475 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT---C
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh---H
Confidence 389999999999999999999999999999999999864 45799999999999999999999999999998765 3
Q ss_pred HHHHHHhcCCCcccchhhhhHHHHHHHHHh-hh----hcHHHHHHhhHHHH
Q psy2759 86 ALKKMMLGKQTKLVSQFRLTYAMILNLMRV-SM----VNVEEMMSMSFKEF 131 (229)
Q Consensus 86 ~~~~~~~~~~~~l~S~~~~~~~~il~~l~~-~~----~~~e~~~~~sf~~~ 131 (229)
..+..+.....|++|++.......+|..-+ +. .+..+++..+|...
T Consensus 476 ~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~ 526 (1724)
T 4f92_B 476 QYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYI 526 (1724)
T ss_dssp CHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHH
T ss_pred HHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHH
Confidence 345556777889999998777766665332 22 22345556665443
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.72 E-value=6e-17 Score=156.26 Aligned_cols=124 Identities=27% Similarity=0.350 Sum_probs=95.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEAL 87 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~ 87 (229)
.|++|.++|||||+++++|||+|++++||+++++||+.+..|.+..+|+||+|||||.|.|..|.+++++.+.. ....+
T Consensus 315 ~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~-~~~~~ 393 (720)
T 2zj8_A 315 NFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD-PREVM 393 (720)
T ss_dssp HHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC-HHHHH
T ss_pred HHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc-HHHHH
Confidence 38899999999999999999999999999999999966667999999999999999999999999999998754 22224
Q ss_pred HHHHhcCCCcccchhhhhH---HHHHHHHHhhh----hcHHHHHHhhHHHHH
Q psy2759 88 KKMMLGKQTKLVSQFRLTY---AMILNLMRVSM----VNVEEMMSMSFKEFG 132 (229)
Q Consensus 88 ~~~~~~~~~~l~S~~~~~~---~~il~~l~~~~----~~~e~~~~~sf~~~~ 132 (229)
.+++.+.+.|++|.+.... ..++..+..+. .+..+++..+|...+
T Consensus 394 ~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~ 445 (720)
T 2zj8_A 394 NHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ 445 (720)
T ss_dssp HHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHH
T ss_pred HHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHh
Confidence 4566788999999876422 23333333322 124455666666543
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.68 E-value=9.3e-17 Score=154.65 Aligned_cols=96 Identities=30% Similarity=0.499 Sum_probs=73.8
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccC---CCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYD---GSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d---~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
|++|.++|||||+++++|||+|++++||+++++|| +....|.+..+|.||+|||||.|.|..|.+++++.+......
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 413 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDR 413 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHH
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHH
Confidence 88999999999999999999999999999999999 334458999999999999999999999999999987532112
Q ss_pred HHHHHHhcCCCcccchhhh
Q psy2759 86 ALKKMMLGKQTKLVSQFRL 104 (229)
Q Consensus 86 ~~~~~~~~~~~~l~S~~~~ 104 (229)
.+.+++.+.+.+++|.+..
T Consensus 414 ~~~~~l~~~~e~~~s~l~~ 432 (715)
T 2va8_A 414 VFKKYVLSDVEPIESKLGS 432 (715)
T ss_dssp HHHHTTSSCCCCCCCSCCS
T ss_pred HHHHHHcCCCCCceecCCc
Confidence 2344567889999998865
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.66 E-value=1.6e-16 Score=152.97 Aligned_cols=93 Identities=35% Similarity=0.599 Sum_probs=80.8
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHHHHH
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQEALK 88 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~~~~ 88 (229)
|++|.++|||||+++++|||+|++++||+++++||+. ..|.+..+|.||+|||||.|.|..|.+++++.+.. ...+.
T Consensus 318 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~--~~~~~ 394 (702)
T 2p6r_A 318 FRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY-SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD--REIAV 394 (702)
T ss_dssp HHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS-EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG--HHHHH
T ss_pred HHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC-CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc--HHHHH
Confidence 8899999999999999999999999999999999942 45899999999999999999999999999998743 33333
Q ss_pred -HHHhcCCCcccchhhh
Q psy2759 89 -KMMLGKQTKLVSQFRL 104 (229)
Q Consensus 89 -~~~~~~~~~l~S~~~~ 104 (229)
+++.+.+.|++|.+..
T Consensus 395 ~~~l~~~~e~~~s~l~~ 411 (702)
T 2p6r_A 395 KRYIFGEPERITSKLGV 411 (702)
T ss_dssp HTTTSSCCCCCCCCCCS
T ss_pred HHHhcCCCCCceeecCc
Confidence 3556889999998865
No 9
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.55 E-value=8.4e-15 Score=116.40 Aligned_cols=63 Identities=27% Similarity=0.462 Sum_probs=59.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+||+||.| ..|.+++++.+.
T Consensus 80 ~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~----p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~ 142 (163)
T 2hjv_A 80 EFKRGEYRYLVATDVAARGIDIENISLVIN----YDL----PLEKESYVHRTGRTGRAG--NKGKAISFVTAF 142 (163)
T ss_dssp HHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSC----CSSHHHHHHHTTTSSCTT--CCEEEEEEECGG
T ss_pred HHHcCCCeEEEECChhhcCCchhcCCEEEE----eCC----CCCHHHHHHhccccCcCC--CCceEEEEecHH
Confidence 488999999999999999999999999999 999 999999999999999999 889999998764
No 10
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.55 E-value=2.7e-14 Score=118.45 Aligned_cols=64 Identities=23% Similarity=0.418 Sum_probs=58.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|.+++||+ |+. |.++.+|+||+|||||.| ..|.+++++.+..
T Consensus 76 ~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~----p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 76 AFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRL----PDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRE 139 (212)
T ss_dssp HHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSC----CSSHHHHHHHHTTBCCCC----BEEEEEECGGG
T ss_pred HHHCCCCeEEEecChhhcCCCCccCcEEEE----CCC----CcCHHHHHHHhcccCCCC--CCCeEEEEEchhH
Confidence 489999999999999999999999999999 999 999999999999999999 8899999998743
No 11
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=6e-15 Score=118.45 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=55.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCC------CCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRD------LNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp------~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. | .++.+|+||+|||||.| ..|.+++++.+..
T Consensus 79 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~d~----p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 79 RFRDGKEKVLITTNVCARGIDVKQVTIVVN----FDL----PVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDE 148 (175)
T ss_dssp HHHTTSCSEEEECCSCCTTTCCTTEEEEEE----SSC----CC--CCSCCHHHHHHHHCBC------CCEEEEEEECGGG
T ss_pred HHHcCCCeEEEEecchhcCCCcccCCEEEE----eCC----CCCccccCCHHHHHHHhcccccCC--CCceEEEEEccch
Confidence 488999999999999999999999999999 998 7 89999999999999999 8899999987643
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.54 E-value=4.5e-15 Score=118.11 Aligned_cols=64 Identities=30% Similarity=0.486 Sum_probs=55.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|.||+|||||.| ..|.+++++.++.
T Consensus 75 ~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~----p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 75 EFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL----PANKENYIHRIGRGGRFG--RKGVAINFVTNED 138 (165)
T ss_dssp HHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSC----CSSGGGGGGSSCSCC-------CEEEEEEETTT
T ss_pred HHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHhcccccCC--CCceEEEEEcchH
Confidence 488999999999999999999999999999 999 999999999999999999 8899999987654
No 13
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.54 E-value=8.6e-15 Score=119.85 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=63.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc--hHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP--GQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~--~~~ 85 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.+... ...
T Consensus 99 ~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~----p~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~~~~~~~~ 168 (191)
T 2p6n_A 99 AFREGKKDVLVATDVASKGLDFPAIQHVIN----YDM----PEEIENYVHRIGRTGCSG--NTGIATTFINKACDESVLM 168 (191)
T ss_dssp HHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSC----CSSHHHHHHHHTTSCC-----CCEEEEEECTTSCHHHHH
T ss_pred HHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCC----CCCHHHHHHHhCccccCC--CCcEEEEEEcCchhHHHHH
Confidence 488999999999999999999999999999 999 999999999999999999 78999999876421 223
Q ss_pred HHHHHHhcCCCc
Q psy2759 86 ALKKMMLGKQTK 97 (229)
Q Consensus 86 ~~~~~~~~~~~~ 97 (229)
.+.+.+.....+
T Consensus 169 ~l~~~l~~~~~~ 180 (191)
T 2p6n_A 169 DLKALLLEAKQK 180 (191)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHccCc
Confidence 444444333333
No 14
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=118.46 Aligned_cols=81 Identities=21% Similarity=0.326 Sum_probs=60.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC-chHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL-PGQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~-~~~~~ 86 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.+.. ...+.
T Consensus 91 ~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~----p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 91 QFRSGKSPILVATAVAARGLDISNVKHVIN----FDL----PSDIEEYVHRIGRTGRVG--NLGLATSFFNERNINITKD 160 (185)
T ss_dssp HHHHTSSSEEEEEC------CCCSBSEEEE----SSC----CSSHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGGHHH
T ss_pred HHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHccccCCCC--CCcEEEEEEchhhHHHHHH
Confidence 488999999999999999999999999999 999 999999999999999999 8899999987543 22344
Q ss_pred HHHHHhcCCCcc
Q psy2759 87 LKKMMLGKQTKL 98 (229)
Q Consensus 87 ~~~~~~~~~~~l 98 (229)
+.+.+.....++
T Consensus 161 l~~~l~~~~~~~ 172 (185)
T 2jgn_A 161 LLDLLVEAKQEV 172 (185)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHhccCCC
Confidence 555544433333
No 15
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.51 E-value=4.8e-15 Score=119.10 Aligned_cols=63 Identities=33% Similarity=0.612 Sum_probs=59.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.+.
T Consensus 76 ~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~----p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~ 138 (172)
T 1t5i_A 76 QFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM----PEDSDTYLHRVARAGRFG--TKGLAITFVSDE 138 (172)
T ss_dssp HHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSC----CSSHHHHHHHHHHHTGGG--CCCEEEEEECSH
T ss_pred HHHCCCCcEEEECCchhcCcchhhCCEEEE----ECC----CCCHHHHHHHhcccccCC--CCcEEEEEEcCh
Confidence 488999999999999999999999999999 999 999999999999999999 889999998763
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.50 E-value=4.7e-14 Score=128.46 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=70.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC--chHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL--PGQE 85 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~--~~~~ 85 (229)
.|++|+++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.++. ....
T Consensus 345 ~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~----p~~~~~y~qriGR~gR~g--~~G~a~~~~~~~~~~~~~~ 414 (434)
T 2db3_A 345 DFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDM----PSKIDDYVHRIGRTGRVG--NNGRATSFFDPEKDRAIAA 414 (434)
T ss_dssp HHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSC----CSSHHHHHHHHTTSSCTT--CCEEEEEEECTTTCGGGHH
T ss_pred HHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECC----CCCHHHHHHHhcccccCC--CCCEEEEEEeccccHHHHH
Confidence 489999999999999999999999999999 999 999999999999999999 8999999987432 2345
Q ss_pred HHHHHHhcCCCcccch
Q psy2759 86 ALKKMMLGKQTKLVSQ 101 (229)
Q Consensus 86 ~~~~~~~~~~~~l~S~ 101 (229)
++.+.+.....++...
T Consensus 415 ~l~~~l~~~~~~vp~~ 430 (434)
T 2db3_A 415 DLVKILEGSGQTVPDF 430 (434)
T ss_dssp HHHHHHHHTTCCCCGG
T ss_pred HHHHHHHHcCCCCCHH
Confidence 6666666555555443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.49 E-value=7.2e-14 Score=130.58 Aligned_cols=62 Identities=31% Similarity=0.465 Sum_probs=59.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++|||||++++||||+|++++||+ |+. |.++.+|.||+|||||.| ..|.++++..+
T Consensus 281 ~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~----p~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~ 342 (523)
T 1oyw_A 281 KFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI----PRNIESYYQETGRAGRDG--LPAEAMLFYDP 342 (523)
T ss_dssp HHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSC----CSSHHHHHHHHTTSCTTS--SCEEEEEEECH
T ss_pred HHHcCCCeEEEEechhhCCCCccCccEEEE----ECC----CCCHHHHHHHhccccCCC--CCceEEEEeCH
Confidence 488999999999999999999999999999 999 999999999999999999 88999999876
No 18
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.47 E-value=2.1e-13 Score=119.33 Aligned_cols=64 Identities=23% Similarity=0.423 Sum_probs=55.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|.+++||+ |+. |.++..|+||+|||||.| ..|.+++++.+..
T Consensus 73 ~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~----p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e 136 (300)
T 3i32_A 73 AFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRM----PDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRE 136 (300)
T ss_dssp HHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSC----CSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred HhhcCCceEEEEechhhcCccccceeEEEE----cCC----CCCHHHHHHHccCcCcCC--CCceEEEEeChHH
Confidence 488999999999999999999999999999 999 999999999999999999 7899999998754
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.46 E-value=1.1e-13 Score=129.17 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=59.9
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|+++|||||+++++|||+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++.+.+
T Consensus 387 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~----p~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e 450 (563)
T 3i5x_A 387 RFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV----PSELANYIHRIGRTARSG--KEGSSVLFICKDE 450 (563)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC----CSSTTHHHHHHTTSSCTT--CCEEEEEEEEGGG
T ss_pred HHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECC----CCchhhhhhhcCccccCC--CCceEEEEEchhH
Confidence 488999999999999999999999999999 999 999999999999999999 8899999988643
No 20
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.15 E-value=1.1e-14 Score=116.55 Aligned_cols=63 Identities=27% Similarity=0.480 Sum_probs=59.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.+.
T Consensus 75 ~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~~----p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~ 137 (170)
T 2yjt_D 75 RLTEGRVNVLVATDVAARGIDIPDVSHVFN----FDM----PRSGDTYLHRIGRTARAG--RKGTAISLVEAH 137 (170)
Confidence 588999999999999999999999999999 999 999999999999999999 889999888764
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.43 E-value=3.3e-13 Score=127.99 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=59.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|.+|+++|||||++++||||+|++++||+ |+. |.++.+|+|++|||||.| ..|.++++..+
T Consensus 312 ~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~----p~s~~~y~Qr~GRaGR~G--~~g~~i~l~~~ 373 (591)
T 2v1x_A 312 KWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSM----SKSMENYYQESGRAGRDD--MKADCILYYGF 373 (591)
T ss_dssp HHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSC----CSSHHHHHHHHTTSCTTS--SCEEEEEEECH
T ss_pred HHHcCCCeEEEEechhhcCCCcccccEEEE----eCC----CCCHHHHHHHhccCCcCC--CCceEEEEECh
Confidence 488999999999999999999999999999 999 999999999999999999 88999999875
No 22
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=121.50 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=64.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc-hHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP-GQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~-~~~~ 86 (229)
.|++|+++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++.+.+. ....
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 390 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVIN----FDL----PSDIEEYVHRIGRTGRVG--NLGLATSFFNERNINITKD 390 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSC----CSSHHHHHHHHTTBCC----CCEEEEEEECGGGGGGHHH
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEE----EcC----CCCHHHHHHhcCccccCC--CCceEEEEEccccHHHHHH
Confidence 378999999999999999999999999999 999 999999999999999999 88999999876432 2344
Q ss_pred HHHHHhcCCCc
Q psy2759 87 LKKMMLGKQTK 97 (229)
Q Consensus 87 ~~~~~~~~~~~ 97 (229)
+.+.+.....+
T Consensus 391 l~~~~~~~~~~ 401 (417)
T 2i4i_A 391 LLDLLVEAKQE 401 (417)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhcCc
Confidence 55544433333
No 23
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.42 E-value=2.3e-13 Score=122.33 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=59.1
Q ss_pred ccccCCccEEEe----chhhhcccCCCC-ceEEEccCcccCCCCCCC--CCHHHHHHhhcccCCCCCC--CceEEEEeec
Q psy2759 8 ELDVFQKQILFA----TETFAMGVNMPA-RTVAFDSTRKYDGSERRD--LNPAEYIQMAGRAGRRGLD--ESGTVIIMCK 78 (229)
Q Consensus 8 ~F~~g~ikvLva----T~t~a~Gin~pa-~~vVi~~~~~~d~~~~rp--~~~~~y~q~~GRAGR~g~d--~~G~~i~l~~ 78 (229)
.|++|+++|||| |+++++|+|+|+ +++||+ |+. | .++.+|+||+|||||.|.+ +.|.+++++.
T Consensus 292 ~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~~----p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 292 DFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGT----PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp HHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ESC----CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred HHhCCCCeEEEEecCcCchhhccCccccccCEEEE----ECC----CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 589999999999 999999999999 999999 999 9 8999999999999999976 5899999993
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.41 E-value=1.4e-13 Score=119.13 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=58.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.| ..|.++++..+
T Consensus 261 ~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~----~~s~~~~~Q~~GR~gR~g--~~g~~~~~~~~ 322 (337)
T 2z0m_A 261 AFREGEYDMLITTDVASRGLDIPLVEKVIN----FDA----PQDLRTYIHRIGRTGRMG--RKGEAITFILN 322 (337)
T ss_dssp HHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSC----CSSHHHHHHHHTTBCGGG--CCEEEEEEESS
T ss_pred HHHcCCCcEEEEcCccccCCCccCCCEEEE----ecC----CCCHHHhhHhcCccccCC--CCceEEEEEeC
Confidence 488999999999999999999999999999 998 999999999999999999 78999888874
No 25
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.39 E-value=4.8e-13 Score=128.68 Aligned_cols=90 Identities=28% Similarity=0.388 Sum_probs=71.0
Q ss_pred cccc--CCccEEEechhhhcccCCCCceEEEccCcccC-----CCCCCCCCHHHHHHhhcccCCCCCC-CceEEEEeecC
Q psy2759 8 ELDV--FQKQILFATETFAMGVNMPARTVAFDSTRKYD-----GSERRDLNPAEYIQMAGRAGRRGLD-ESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~--g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d-----~~~~rp~~~~~y~q~~GRAGR~g~d-~~G~~i~l~~~ 79 (229)
.|++ |.++|||||+++++|||++...||+.+..||+ +...+|.+..+|+||+|||||.|.+ ..|.+++++.+
T Consensus 365 ~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 365 KFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp HHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred HHHccCCCeEEEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 3777 99999999999999999987778888887763 1235699999999999999999966 46888888765
Q ss_pred CCchHHHHHHHHhcCCCcccc
Q psy2759 80 ELPGQEALKKMMLGKQTKLVS 100 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~S 100 (229)
+ ...+.+++...+.++.+
T Consensus 445 d---~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 445 D---LSLLKEILKRPVDPIRA 462 (677)
T ss_dssp H---HHHHHHHHHSCCCCCCC
T ss_pred h---HHHHHHHHhcCcchhhh
Confidence 3 25677888888888877
No 26
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.38 E-value=4.3e-13 Score=119.26 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=59.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++.++
T Consensus 303 ~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g--~~g~~~~l~~~~ 365 (400)
T 1s2m_A 303 EFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDF----PKTAETYLHRIGRSGRFG--HLGLAINLINWN 365 (400)
T ss_dssp HHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSC----CSSHHHHHHHHCBSSCTT--CCEEEEEEECGG
T ss_pred HHhcCCCcEEEEcCccccCCCccCCCEEEE----eCC----CCCHHHHHHhcchhcCCC--CCceEEEEeccc
Confidence 488999999999999999999999999999 998 999999999999999999 889999998764
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=9.3e-13 Score=123.93 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=60.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|||+|++++||+ |+. |.++..|+||+|||||.| ..|.+++++.+.+
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~~----p~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e 399 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV----PSELANYIHRIGRTARSG--KEGSSVLFICKDE 399 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC----CSSTTHHHHHHTTSSCTT--CCEEEEEEEEGGG
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEE----cCC----CCCHHHhhhhccccccCC--CCceEEEEEcccH
Confidence 488999999999999999999999999999 999 999999999999999999 8899999988743
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.38 E-value=6.9e-13 Score=116.94 Aligned_cols=63 Identities=29% Similarity=0.594 Sum_probs=58.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCC------CHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDL------NPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~------~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|+|+|++++||+ |+. |. ++.+|+||+|||||.| ..|.+++++.++
T Consensus 288 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~----p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 356 (395)
T 3pey_A 288 DFREGRSKVLITTNVLARGIDIPTVSMVVN----YDL----PTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHDK 356 (395)
T ss_dssp HHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSC----CBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSH
T ss_pred HHHCCCCCEEEECChhhcCCCcccCCEEEE----cCC----CCCCcCCCCHHHhhHhccccccCC--CCceEEEEEech
Confidence 488999999999999999999999999999 888 54 9999999999999999 889999998763
No 29
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.37 E-value=7.9e-13 Score=117.53 Aligned_cols=67 Identities=22% Similarity=0.439 Sum_probs=58.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCC--CCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRD--LNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp--~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|||+|++++||+ |+...... .+..+|+||+|||||.| ..|.+++++.++
T Consensus 311 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~ 379 (412)
T 3fht_A 311 RFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSK 379 (412)
T ss_dssp HHHTTSCSEEEECGGGTSSCCCTTEEEEEE----SSCCBCSSSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSH
T ss_pred HHHCCCCcEEEEcCccccCCCccCCCEEEE----ECCCCCCCCCcchheeecccCcccCCC--CCceEEEEEcCh
Confidence 488999999999999999999999999999 88821110 57899999999999999 889999998763
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.37 E-value=5.5e-13 Score=119.09 Aligned_cols=79 Identities=24% Similarity=0.388 Sum_probs=65.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCc-hHHH
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP-GQEA 86 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~-~~~~ 86 (229)
.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.| ..|.+++++.+++. ....
T Consensus 321 ~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 321 EFRSGASRVLISTDVWARGLDVPQVSLIIN----YDL----PNNRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILRD 390 (410)
T ss_dssp HHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSC----CSSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHHH
T ss_pred HHHCCCCCEEEECChhhCcCCcccCCEEEE----ECC----CCCHHHHHHhcccccCCC--CceEEEEEecHHHHHHHHH
Confidence 488999999999999999999999999999 999 999999999999999999 88999999876431 2333
Q ss_pred HHHHHhcCCC
Q psy2759 87 LKKMMLGKQT 96 (229)
Q Consensus 87 ~~~~~~~~~~ 96 (229)
+.+.+.....
T Consensus 391 i~~~~~~~~~ 400 (410)
T 2j0s_A 391 IEQYYSTQID 400 (410)
T ss_dssp HHHHTTCCCE
T ss_pred HHHHhCCCce
Confidence 4444444433
No 31
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.35 E-value=1.5e-12 Score=113.74 Aligned_cols=64 Identities=25% Similarity=0.465 Sum_probs=59.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|.||+|||||.| ..|.+++++.+.+
T Consensus 283 ~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~----~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 283 LFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHL----PQNPESYMHRIGRTGRAG--KKGKAISIINRRE 346 (367)
T ss_dssp HHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSC----CSCHHHHHHHSTTTCCSS--SCCEEEEEECTTS
T ss_pred HHHcCCCeEEEECChhhcCCCcccCCEEEE----ecC----CCCHHHhhhcccccccCC--CccEEEEEEcHHH
Confidence 478999999999999999999999999999 998 999999999999999999 7899998887654
No 32
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.34 E-value=1.2e-12 Score=115.73 Aligned_cols=63 Identities=33% Similarity=0.612 Sum_probs=59.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++.++
T Consensus 295 ~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~----p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~ 357 (391)
T 1xti_A 295 QFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM----PEDSDTYLHRVARAGRFG--TKGLAITFVSDE 357 (391)
T ss_dssp HHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSC----CSSHHHHHHHHCBCSSSC--CCCEEEEEECSH
T ss_pred HHhcCCCcEEEECChhhcCCCcccCCEEEE----eCC----CCCHHHHHHhcccccCCC--CceEEEEEEccc
Confidence 478999999999999999999999999999 998 999999999999999999 889999998764
No 33
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.33 E-value=5.6e-13 Score=118.76 Aligned_cols=64 Identities=31% Similarity=0.505 Sum_probs=48.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++.++.
T Consensus 325 ~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~----p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 325 EFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL----PTNRENYIHRIGRGGRFG--RKGVAINMVTEED 388 (414)
T ss_dssp HHSCC---CEEECSSCC--CCGGGCSCEEE----SSC----CSSTHHHHHHSCCC---------CEEEEECSTH
T ss_pred HHHcCCCcEEEECCccccCCCccCCCEEEE----eCC----CCCHHHhhhhcCcccCCC--CCceEEEEEcHHH
Confidence 488999999999999999999999999999 999 999999999999999999 8899999988743
No 34
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.30 E-value=2.8e-12 Score=117.53 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=54.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccC--------CCC--------CCCCCHHHHHHhhcccCCCCCCCce
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYD--------GSE--------RRDLNPAEYIQMAGRAGRRGLDESG 71 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d--------~~~--------~rp~~~~~y~q~~GRAGR~g~d~~G 71 (229)
.|++|+++|||||+++++|||+|+ ++||+ |+ ..+ ..|.+..+|+||+|||||.|.+ .|
T Consensus 229 ~f~~g~~~vLVaT~v~~~GiDip~-~~VI~----~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g 302 (451)
T 2jlq_A 229 KTKLTDWDFVVTTDISEMGANFRA-GRVID----PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-ED 302 (451)
T ss_dssp GGGSSCCSEEEECGGGGSSCCCCC-SEEEE----CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CC
T ss_pred hhccCCceEEEECCHHHhCcCCCC-CEEEE----CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Cc
Confidence 589999999999999999999999 88887 55 100 0389999999999999999932 67
Q ss_pred EEEEeecC
Q psy2759 72 TVIIMCKE 79 (229)
Q Consensus 72 ~~i~l~~~ 79 (229)
.++++...
T Consensus 303 ~~~~~~~~ 310 (451)
T 2jlq_A 303 DQYVFSGD 310 (451)
T ss_dssp EEEEECSC
T ss_pred cEEEEeCC
Confidence 88887654
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.29 E-value=2.8e-13 Score=124.17 Aligned_cols=63 Identities=22% Similarity=0.433 Sum_probs=0.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCC------CCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRD------LNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp------~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|||+|++++||+ ||. | .+..+|+||+|||||.| ..|.+++++.++
T Consensus 378 ~f~~g~~~iLv~T~~~~~GlDip~v~~VI~----~d~----p~~~~~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~ 446 (479)
T 3fmp_B 378 RFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDL----PVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSK 446 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHcCCCcEEEEccccccCCccccCCEEEE----ecC----CCCCccCCCHHHHHHHhcccccCC--CCceEEEEEcCc
Confidence 589999999999999999999999999999 998 6 46789999999999999 889999998764
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.28 E-value=3.2e-13 Score=119.41 Aligned_cols=63 Identities=30% Similarity=0.515 Sum_probs=0.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|.++|||||+++++|+|+|++++||+ |+. |.++.+|+||+|||||.| ..|.+++++.++
T Consensus 304 ~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~----p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~ 366 (394)
T 1fuu_A 304 EFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL----PANKENYIHRIGRGGRFG--RKGVAINFVTNE 366 (394)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHCCCCcEEEECChhhcCCCcccCCEEEE----eCC----CCCHHHHHHHcCcccCCC--CCceEEEEEchh
Confidence 478999999999999999999999999999 998 999999999999999999 889999988764
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.28 E-value=2.1e-12 Score=119.93 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=51.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCC--CCHHHHHHhhcccCCCCCCCceEEEEeecCCC--ch
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRD--LNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL--PG 83 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp--~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~--~~ 83 (229)
.|++|.++|||||+++++|+|+|++++||+ |+....+. .++.+|+||+|||||.| ..|.+++++.++. ..
T Consensus 402 ~f~~g~~~VLVaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~~~~~~ 475 (508)
T 3fho_A 402 SFRVGTSKVLVTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDKKSWEE 475 (508)
T ss_dssp HHHSSSCCCCEECC-----CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC-------CEEEEEECTTTSSSS
T ss_pred HHHCCCCeEEEeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeChHHHHH
Confidence 488999999999999999999999999998 88711111 78999999999999999 8899998887432 23
Q ss_pred HHHHHHHHhcCCCcc
Q psy2759 84 QEALKKMMLGKQTKL 98 (229)
Q Consensus 84 ~~~~~~~~~~~~~~l 98 (229)
...+.+.+.....++
T Consensus 476 ~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 476 MNAIQEYFQRPITRV 490 (508)
T ss_dssp HHHHHHHSCCCCC--
T ss_pred HHHHHHHHCCCcccC
Confidence 445555544443333
No 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.26 E-value=7.2e-12 Score=114.60 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=50.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEc-cCcc--------------cCCCCCCCCCHHHHHHhhcccCCC-CCCCce
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFD-STRK--------------YDGSERRDLNPAEYIQMAGRAGRR-GLDESG 71 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~-~~~~--------------~d~~~~rp~~~~~y~q~~GRAGR~-g~d~~G 71 (229)
.|++|+++|||||+++++|||+| +++||+ ++.+ |+. |.++.+|+||+|||||. | ..|
T Consensus 218 ~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~----p~~~~~~~Qr~GR~GR~g~--~~g 290 (440)
T 1yks_A 218 TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL----RISASSAAQRRGRIGRNPN--RDG 290 (440)
T ss_dssp ----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE----ECCHHHHHHHHTTSSCCTT--CCC
T ss_pred hhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc----ccCHHHHHHhccccCCCCC--CCc
Confidence 58999999999999999999999 777764 1111 555 89999999999999998 6 689
Q ss_pred EEEEee
Q psy2759 72 TVIIMC 77 (229)
Q Consensus 72 ~~i~l~ 77 (229)
.+++++
T Consensus 291 ~~~~l~ 296 (440)
T 1yks_A 291 DSYYYS 296 (440)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999996
No 39
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.23 E-value=7.3e-12 Score=115.08 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=52.4
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEcc-Ccc---------------cCCCCCCCCCHHHHHHhhcccCCCCCCC-c
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDS-TRK---------------YDGSERRDLNPAEYIQMAGRAGRRGLDE-S 70 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~-~~~---------------~d~~~~rp~~~~~y~q~~GRAGR~g~d~-~ 70 (229)
.|++|+++|||||+++++|||+|+ ++||+. +.+ ||. |.++.+|+||+|||||.| . .
T Consensus 231 ~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~----p~s~~~~~QR~GRaGR~g--~~~ 303 (459)
T 2z83_A 231 KCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPS----PITSASAAQRRGRVGRNP--NQV 303 (459)
T ss_dssp GSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCE----ECCHHHHHHHHTTSSCCT--TCC
T ss_pred hccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCC----CCCHHHHHHhccccCCCC--CCC
Confidence 589999999999999999999999 777751 111 344 899999999999999999 5 8
Q ss_pred eEEEEeecCC
Q psy2759 71 GTVIIMCKEE 80 (229)
Q Consensus 71 G~~i~l~~~~ 80 (229)
|.+++++...
T Consensus 304 G~~~~~~~~~ 313 (459)
T 2z83_A 304 GDEYHYGGAT 313 (459)
T ss_dssp CEEEEECSCC
T ss_pred CeEEEEEccc
Confidence 9999888764
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.22 E-value=8.9e-12 Score=111.66 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=59.2
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCch
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPG 83 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~ 83 (229)
+|++|.++|||||+++++|+|+|+.++||+ ||. |.++..|.|++|||||.| . |.++.+...+..+
T Consensus 414 ~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~----~d~----~~~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 414 EFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEP----VPSAIRSIQRRGRTGRHM--P-GRVIILMAKGTRD 478 (494)
T ss_dssp HHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSC----CHHHHHHHHHHTTSCSCC--C-SEEEEEEETTSHH
T ss_pred HHhcCCceEEEECCccccCCCchhCCEEEE----eCC----CCCHHHHHHHHhhccCCC--C-ceEEEEEecCCHH
Confidence 488999999999999999999999999999 998 889999999999999999 5 9999888776433
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.18 E-value=2.5e-11 Score=115.64 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=52.6
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEc-cC---------------cccCCCCCCCCCHHHHHHhhcccCCCCCCCce
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFD-ST---------------RKYDGSERRDLNPAEYIQMAGRAGRRGLDESG 71 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~-~~---------------~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G 71 (229)
.|++|+++|||||+++++|||+| ++.||. +. ..|+. |.+..+|+||+|||||.|. ..|
T Consensus 396 ~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~----P~s~~~yiQR~GRaGR~g~-~~G 469 (618)
T 2whx_A 396 KTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPI----PVTPASAAQRRGRIGRNPA-QED 469 (618)
T ss_dssp HHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEE----ECCHHHHHHHHTTSSCCTT-CCC
T ss_pred hhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccc----cCCHHHHHHhccccCCCCC-CCC
Confidence 58999999999999999999999 555422 21 11555 8999999999999999972 378
Q ss_pred EEEEeec
Q psy2759 72 TVIIMCK 78 (229)
Q Consensus 72 ~~i~l~~ 78 (229)
.++++..
T Consensus 470 ~ai~l~~ 476 (618)
T 2whx_A 470 DQYVFSG 476 (618)
T ss_dssp EEEEECS
T ss_pred eEEEEcc
Confidence 9998885
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.15 E-value=1.5e-11 Score=113.60 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=33.8
Q ss_pred cccc-CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDV-FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~-g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. ..|.+++++..+
T Consensus 447 ~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~----p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 508 (556)
T 4a2p_A 447 AFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA---AGSKCILVTSKT 508 (556)
T ss_dssp -------CCEEEEEC-----------CEEEE----ETC----CSCHHHHHHC------------CCEEEEESCH
T ss_pred HhcccCceEEEEEcCchhcCCCchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC---CCceEEEEEeCc
Confidence 4888 99999999999999999999999999 999 9999999999999 987 478999888764
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.12 E-value=1.1e-11 Score=113.99 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=52.5
Q ss_pred cccc-CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDV-FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~-g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. ..|.+++++.++
T Consensus 446 ~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~----~d~----p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~ 507 (555)
T 3tbk_A 446 AFRASGDNNILIATSVADEGIDIAECNLVIL----YEY----VGNVIKMIQTRGR-GRA---RDSKCFLLTSSA 507 (555)
T ss_dssp ------CCSEEEECCCTTCCEETTSCSEEEE----ESC----CSSCCCEECSSCC-CTT---TSCEEEEEESCH
T ss_pred HHhcCCCeeEEEEcchhhcCCccccCCEEEE----eCC----CCCHHHHHHhcCc-CcC---CCceEEEEEcCC
Confidence 4888 99999999999999999999999999 999 9999999999999 877 579999998764
No 44
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.11 E-value=2.8e-11 Score=115.58 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=49.5
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|.++|||||+++++|||+|++++||+ ||. |.++..|+||+|||||.| +.++++...
T Consensus 459 ~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~----p~s~~~~~Qr~GRArr~g----~~~~l~~~~ 518 (699)
T 4gl2_A 459 KFRTGKINLLIATTVAEEGLDIKECNIVIR----YGL----VTNEIAMVQARGRARADE----STYVLVAHS 518 (699)
T ss_dssp HHCC---CCSEEECSCCTTSCCCSCCCCEE----ESC----CCCHHHHHHHHTTSCSSS----CEEEEEEES
T ss_pred HHhcCCCcEEEEccccccCCccccCCEEEE----eCC----CCCHHHHHHHcCCCCCCC----ceEEEEEeC
Confidence 489999999999999999999999999999 999 999999999999987766 444444443
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.11 E-value=1.1e-10 Score=112.21 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=53.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEcc-Cc---------------ccCCCCCCCCCHHHHHHhhcccCCC-CCCCc
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDS-TR---------------KYDGSERRDLNPAEYIQMAGRAGRR-GLDES 70 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~-~~---------------~~d~~~~rp~~~~~y~q~~GRAGR~-g~d~~ 70 (229)
.|++|+++|||||+++++|||+| +..||+. +. .||. |.++.+|+||+|||||. | ..
T Consensus 451 ~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~----P~s~~~y~Qr~GRaGR~~g--~~ 523 (673)
T 2wv9_A 451 KCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPS----AITSASAAQRRGRVGRNPS--QI 523 (673)
T ss_dssp GGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSE----ECCHHHHHHHHTTSSCCSS--CC
T ss_pred HHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccC----CCCHHHHHHHhhccCCCCC--CC
Confidence 58999999999999999999999 7777751 10 0344 89999999999999999 6 78
Q ss_pred eEEEEee
Q psy2759 71 GTVIIMC 77 (229)
Q Consensus 71 G~~i~l~ 77 (229)
|.++++.
T Consensus 524 G~ai~l~ 530 (673)
T 2wv9_A 524 GDEYHYG 530 (673)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999995
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.10 E-value=4.9e-11 Score=116.36 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=57.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCC-CCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRD-LNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp-~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|++|+++|||||+++++|||+|++++||+ ++. | .+...|.||+|||||.| ..|.|++++.+
T Consensus 634 ~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~----~r~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 634 EFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENP----ERFGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp HHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSC----SSSCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred HHHCCCCeEEEECCCCCccccCCCCCEEEE----eCC----CCCCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 488999999999999999999999999998 887 5 47889999999999999 88999999874
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.09 E-value=5.2e-11 Score=108.54 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=50.8
Q ss_pred ccccCCccEEEechhhhcccCCCCceE----------------EEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCce
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTV----------------AFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESG 71 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~v----------------Vi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G 71 (229)
.|++|+++|||||+++++|||+|...| ||+ ++. |.+..+|+||+|||||.|.. .|
T Consensus 212 ~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~----~~~----p~~~~~~~Qr~GR~GR~g~~-~~ 282 (431)
T 2v6i_A 212 KCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQ----GPI----AITPASAAQRRGRIGRNPEK-LG 282 (431)
T ss_dssp HHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEE----EEE----ECCHHHHHHHHTTSSCCTTC-CC
T ss_pred hhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeec----ccc----cCCHHHHHHhhhccCCCCCC-CC
Confidence 489999999999999999999996555 344 666 89999999999999999832 45
Q ss_pred EEEEeec
Q psy2759 72 TVIIMCK 78 (229)
Q Consensus 72 ~~i~l~~ 78 (229)
.++++..
T Consensus 283 ~~~~~~~ 289 (431)
T 2v6i_A 283 DIYAYSG 289 (431)
T ss_dssp CEEEECS
T ss_pred eEEEEcC
Confidence 6666653
No 48
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.07 E-value=1.8e-10 Score=112.36 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=39.5
Q ss_pred cccc-CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDV-FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~-g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. ..|.+++++..+
T Consensus 688 ~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~----p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~ 749 (797)
T 4a2q_A 688 AFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (797)
T ss_dssp ------CCSEEEEECC-------CCCSEEEE----ESC----CSCHHHHHTC-----------CCCEEEEECCH
T ss_pred HhhccCCceEEEEcCchhcCCCchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC---CCceEEEEEeCC
Confidence 4888 99999999999999999999999999 999 9999999999999 988 579999998763
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.07 E-value=5.1e-11 Score=108.82 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=58.0
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC-CceEEEEeecCCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD-ESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d-~~G~~i~l~~~~~ 81 (229)
.|++|.++|||||+++++|+|+|++++||. ++. |.++..|.|++|||||.|.+ ....++.++..+.
T Consensus 389 ~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~----~~~----~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 389 GFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSG----SGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp HHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECC----SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred HHhCCCCCEEEEcCchhcCcccccCcEEEE----ECC----CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 488999999999999999999999999999 998 89999999999999999965 4566666666543
No 50
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.04 E-value=2.2e-10 Score=109.95 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=55.9
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCC-CCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSER-RDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~-rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
|++|.++|||||+++++|+|+|.+++||+ +|...+ -|.+..+|+||+|||||.| .|.++++++...
T Consensus 485 f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 485 LRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp HHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred hhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 88999999999999999999999997777 554211 1678999999999999986 699999988754
No 51
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.03 E-value=1.3e-10 Score=117.08 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=60.0
Q ss_pred ccccCCccEEEe----chhhhcccCCCC-ceEEEccCcccCCCCCCC---------------------------------
Q psy2759 8 ELDVFQKQILFA----TETFAMGVNMPA-RTVAFDSTRKYDGSERRD--------------------------------- 49 (229)
Q Consensus 8 ~F~~g~ikvLva----T~t~a~Gin~pa-~~vVi~~~~~~d~~~~rp--------------------------------- 49 (229)
.|++|+++|||| |+++++|||+|+ +++||+ ||...++-
T Consensus 349 ~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~----~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 424 (1104)
T 4ddu_A 349 DFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEEL 424 (1104)
T ss_dssp HHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE----ESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHH
T ss_pred HHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE----ECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999 999999999999 999999 88833000
Q ss_pred -----------------------------------CCHHHHHHhhcccCCC--CCCCceEEEEeecCCCchHHHHHHH
Q psy2759 50 -----------------------------------LNPAEYIQMAGRAGRR--GLDESGTVIIMCKEELPGQEALKKM 90 (229)
Q Consensus 50 -----------------------------------~~~~~y~q~~GRAGR~--g~d~~G~~i~l~~~~~~~~~~~~~~ 90 (229)
.++.+|+||+|||||. |....|.+|+++++. ..+..+.+.
T Consensus 425 ~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~-~~~~~l~~~ 501 (1104)
T 4ddu_A 425 RKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE-EIFESLKTR 501 (1104)
T ss_dssp HHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCH-HHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecH-HHHHHHHHH
Confidence 1778999999999995 433478999998542 333444444
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.99 E-value=2.5e-10 Score=111.38 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=54.9
Q ss_pred cCCccEEEechhhhcccCCCCceEEEcc----CcccCCCC------CCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 11 VFQKQILFATETFAMGVNMPARTVAFDS----TRKYDGSE------RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 11 ~g~ikvLvaT~t~a~Gin~pa~~vVi~~----~~~~d~~~------~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
+|.++|||||+++++|||+|++++||+. ...||... ..|.+..+|.||+|||||. ..|.++.++.+
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~ 442 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTE 442 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecH
Confidence 8999999999999999999999999982 22344421 1278999999999999998 48999999864
No 53
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.98 E-value=5.5e-10 Score=107.17 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=55.7
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEccCcccCCCCC-CCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSER-RDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~-rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
|++|.++|||||+++++|+|+|.+++||+ +|...+ -|.+..+|+||+|||||. ..|.+++++.+..
T Consensus 491 f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 491 LRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp HHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred HhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 88999999999999999999999997777 554211 167899999999999997 4799999998754
No 54
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.98 E-value=3.6e-10 Score=108.33 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=50.6
Q ss_pred cccCCccEEEechhhhcccCCCCceEEEc-cCc-----ccCCC-------CCCCCCHHHHHHhhcccCCCCCCCceEEEE
Q psy2759 9 LDVFQKQILFATETFAMGVNMPARTVAFD-STR-----KYDGS-------ERRDLNPAEYIQMAGRAGRRGLDESGTVII 75 (229)
Q Consensus 9 F~~g~ikvLvaT~t~a~Gin~pa~~vVi~-~~~-----~~d~~-------~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~ 75 (229)
|+++..+|||||+++++|||+| +++||+ +.. -||.. ...|.+..+|+||+||||| | ..|. +.
T Consensus 435 r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~ 509 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YR 509 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EE
T ss_pred HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EE
Confidence 5567779999999999999998 666662 100 15510 0138899999999999999 8 8899 77
Q ss_pred eecCCC
Q psy2759 76 MCKEEL 81 (229)
Q Consensus 76 l~~~~~ 81 (229)
++.+++
T Consensus 510 lvt~~e 515 (666)
T 3o8b_A 510 FVTPGE 515 (666)
T ss_dssp ESCCCC
T ss_pred EEecch
Confidence 776543
No 55
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.98 E-value=6.7e-11 Score=112.88 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred cccc-CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDV-FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~-g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. ..|.+++++..+
T Consensus 455 ~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~----~d~----p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~ 516 (696)
T 2ykg_A 455 AFKASGDHNILIATSVADEGIDIAQCNLVIL----YEY----VGNVIKMIQTRGR-GRA---RGSKCFLLTSNA 516 (696)
T ss_dssp ------CCSCSEEEESSCCC---CCCSEEEE----ESC----C--CCCC-------------CCCEEEEEESCH
T ss_pred HHHhcCCccEEEEechhhcCCcCccCCEEEE----eCC----CCCHHHHHHhhcc-CcC---CCceEEEEecCC
Confidence 4887 99999999999999999999999999 999 9999999999999 997 478999888763
No 56
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.95 E-value=3.8e-09 Score=107.00 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=56.3
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++|+++|||||+++++|||+|++++||. ++.. +.++..|.||+||+||.| ..|.|++++.++
T Consensus 859 ~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~---~~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 859 DFHHQRFNVLVCTTIIETGIDIPTANTIII----ERAD---HFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp HHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTT---SSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred HHHcCCCcEEEECCcceeeecccCCcEEEE----eCCC---CCCHHHHHHHHhccCcCC--CceEEEEEECCc
Confidence 488999999999999999999999998886 5541 368889999999999999 899999998764
No 57
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.95 E-value=6.6e-09 Score=101.35 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=55.5
Q ss_pred ccccCCccEEEechhhhcccCCC--------CceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMP--------ARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~p--------a~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~ 79 (229)
.|+.| .|+|||+.++||+|++ ...+||+ |+. |.+...|.|++||+||.| ..|.++.+++.
T Consensus 477 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn----~d~----p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~ 544 (844)
T 1tf5_A 477 AGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG----TER----HESRRIDNQLRGRSGRQG--DPGITQFYLSM 544 (844)
T ss_dssp TTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE----SSC----CSSHHHHHHHHTTSSGGG--CCEEEEEEEET
T ss_pred cCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE----ecC----CCCHHHHHhhcCccccCC--CCCeEEEEecH
Confidence 45444 7999999999999999 7889999 999 999999999999999999 99999998876
Q ss_pred CC
Q psy2759 80 EL 81 (229)
Q Consensus 80 ~~ 81 (229)
++
T Consensus 545 eD 546 (844)
T 1tf5_A 545 ED 546 (844)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.94 E-value=1.7e-10 Score=106.30 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=49.2
Q ss_pred ccccCCccEEEec-hhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCC
Q psy2759 8 ELDVFQKQILFAT-ETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGL 67 (229)
Q Consensus 8 ~F~~g~ikvLvaT-~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~ 67 (229)
.|++|.++||||| +++++|+|+|++++||. ++. |.++.+|.|++|||||.|.
T Consensus 392 ~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~----~~s~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 392 LAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHG----VKSKIIVLQTIGRVLRKHG 444 (510)
T ss_dssp HHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSC----CCSCCHHHHHHHHHHTTTC
T ss_pred HHhCCCCCEEEEEcChhhcccccccCcEEEE----eCC----CCCHHHHHHHHhcccccCC
Confidence 4789999999999 99999999999999999 888 8899999999999999994
No 59
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.93 E-value=6.6e-10 Score=111.63 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=25.6
Q ss_pred ccccCCccEEEe----chhhhcccCCCCc-eEEEccCcccCC
Q psy2759 8 ELDVFQKQILFA----TETFAMGVNMPAR-TVAFDSTRKYDG 44 (229)
Q Consensus 8 ~F~~g~ikvLva----T~t~a~Gin~pa~-~vVi~~~~~~d~ 44 (229)
.|++|.++|||| |+++++|||+|++ ++||+ |+.
T Consensus 314 ~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~----~~~ 351 (1054)
T 1gku_B 314 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VGC 351 (1054)
T ss_dssp HHHHTSCSEEEEECC------CCSCCTTTCCEEEE----ESC
T ss_pred HHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE----eCC
Confidence 489999999999 9999999999995 99998 877
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.92 E-value=4.1e-10 Score=111.82 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=40.0
Q ss_pred cccc-CCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDV-FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~-g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++ |.++|||||+++++|||+|++++||+ ||. |.++..|+||+|| ||. ..|.+++++..+
T Consensus 688 ~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~----p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 688 AFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY----SGNVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp ------CCSEEEEECC------CCCCSEEEE----ESC----CSCSHHHHCC-----------CCCEEEEESCH
T ss_pred HhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCC----CCCHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 4888 99999999999999999999999999 999 9999999999999 988 478888888664
No 61
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.86 E-value=3.2e-09 Score=105.82 Aligned_cols=75 Identities=21% Similarity=0.186 Sum_probs=59.9
Q ss_pred ccccCC--ccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 8 ELDVFQ--KQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 8 ~F~~g~--ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
.|++|. ++|||||+++++|+|+|..++||+ ||. |.++..|.|++||+||.|......++.+...+. ...
T Consensus 549 ~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~----~d~----p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t-~ee 619 (968)
T 3dmq_A 549 WFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM----FDL----PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT-AQS 619 (968)
T ss_dssp HHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC----SSC----CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS-HHH
T ss_pred HHhCCCCcccEEEecchhhcCCCcccCcEEEE----ecC----CCCHHHHHHHhhccccCCCCceEEEEEecCCCh-HHH
Confidence 488887 999999999999999999999999 999 999999999999999999443334444444432 234
Q ss_pred HHHHHH
Q psy2759 86 ALKKMM 91 (229)
Q Consensus 86 ~~~~~~ 91 (229)
.+.+.+
T Consensus 620 ~i~~~~ 625 (968)
T 3dmq_A 620 VLVRWY 625 (968)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455554
No 62
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.82 E-value=2e-09 Score=92.61 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred ccccC-Ccc-EEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVF-QKQ-ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g-~ik-vLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|++| .++ +|++|+++++|+|+++.+.||+ ||. |.+|..|.|++||++|.|......++.+...+
T Consensus 158 ~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~----~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 158 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR----WWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp HHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC----CSCTTTC--------------CCEEEEEEETT
T ss_pred HhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC----CCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 47777 788 7999999999999999999999 999 99999999999999999966665666666554
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.81 E-value=4.3e-09 Score=101.31 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=53.3
Q ss_pred CccEEEechhhhcccCCC--------CceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 13 QKQILFATETFAMGVNMP--------ARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin~p--------a~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
...|+|||++++||+|++ ....||+ ++. |.++..|.|++||+||.| ..|.++.+++.++
T Consensus 522 ~g~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~----Pes~r~y~qriGRTGRqG--~~G~a~~fvsleD 588 (822)
T 3jux_A 522 KGMVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TER----HESRRIDNQLRGRAGRQG--DPGESIFFLSLED 588 (822)
T ss_dssp TTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSC----CSSHHHHHHHHTTSSCSS--CCCEEEEEEETTS
T ss_pred CCeEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCC----CCCHHHHHHhhCccccCC--CCeeEEEEechhH
Confidence 347999999999999998 5568999 998 999999999999999999 9999999988764
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.74 E-value=7.4e-09 Score=97.32 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=47.5
Q ss_pred ccccCCcc---EEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCC
Q psy2759 8 ELDVFQKQ---ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGL 67 (229)
Q Consensus 8 ~F~~g~ik---vLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~ 67 (229)
+|++|..+ |||||+++++|||+|++++||. ++. |.++..|+||+||+||.+.
T Consensus 491 ~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~~----~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 491 RFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----ARV----VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ESC----CCCHHHHHHHHTTSCCCBG
T ss_pred HHhCCCCCCCEEEEECChhhcCccchheeEEEE----Eec----CCChHHHHHHHhhhcccCc
Confidence 47888766 8889999999999999999999 888 8999999999999999884
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.71 E-value=1.3e-08 Score=93.44 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=59.3
Q ss_pred ccccC-Ccc-EEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCCchHH
Q psy2759 8 ELDVF-QKQ-ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELPGQE 85 (229)
Q Consensus 8 ~F~~g-~ik-vLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~~~~~ 85 (229)
+|++| .++ +|+||++++.|+|+|+.++||+ ||. |.++..|.|++||++|.|..+...++.++..+.-+ .
T Consensus 387 ~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d~----~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie-e 457 (500)
T 1z63_A 387 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR----WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE-E 457 (500)
T ss_dssp HHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SSC----CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH-H
T ss_pred HhcCCCCCCEEEEecccccCCCchhhCCEEEE----eCC----CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH-H
Confidence 37777 566 7999999999999999999999 999 99999999999999999987777777666654322 4
Q ss_pred HHHHHHhcCC
Q psy2759 86 ALKKMMLGKQ 95 (229)
Q Consensus 86 ~~~~~~~~~~ 95 (229)
.+.+.+..+.
T Consensus 458 ~i~~~~~~K~ 467 (500)
T 1z63_A 458 KIDQLLAFKR 467 (500)
T ss_dssp HTHHHHTTCS
T ss_pred HHHHHHHHHH
Confidence 4566554443
No 66
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.69 E-value=1.4e-08 Score=99.00 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=55.9
Q ss_pred cccccCCccEEEechhhhcccCCCCc-------------------------------------eEEEccCcccCCCCCCC
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPAR-------------------------------------TVAFDSTRKYDGSERRD 49 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~-------------------------------------~vVi~~~~~~d~~~~rp 49 (229)
..|+.| .|+|||+.++||+|++.. .+||+ |+. |
T Consensus 485 ~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~----p 554 (853)
T 2fsf_A 485 QAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TER----H 554 (853)
T ss_dssp TTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSC----C
T ss_pred hcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccC----C
Confidence 456777 799999999999999973 58999 998 9
Q ss_pred CCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 50 LNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 50 ~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.+...|.|++||+||.| +.|.++.+++.++
T Consensus 555 es~riy~qr~GRTGRqG--d~G~s~~fls~eD 584 (853)
T 2fsf_A 555 ESRRIDNQLRGRSGRQG--DAGSSRFYLSMED 584 (853)
T ss_dssp SSHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred CCHHHHHhhccccccCC--CCeeEEEEecccH
Confidence 99999999999999999 9999998887654
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.60 E-value=2.7e-07 Score=90.39 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred cccccCCccEEEechhhhcccCCCCc----------------------------------------------------eE
Q psy2759 7 FELDVFQKQILFATETFAMGVNMPAR----------------------------------------------------TV 34 (229)
Q Consensus 7 ~~F~~g~ikvLvaT~t~a~Gin~pa~----------------------------------------------------~v 34 (229)
..|+.| .|+|||+.++||+|++.. .+
T Consensus 504 ~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlh 581 (922)
T 1nkt_A 504 VAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLY 581 (922)
T ss_dssp TTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEE
T ss_pred hcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcE
Confidence 346666 799999999999999974 58
Q ss_pred EEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 35 AFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 35 Vi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
||+ |+. |.+...|.|++||+||.| +.|.++.+++.++
T Consensus 582 VI~----te~----pes~riy~qr~GRTGRqG--dpG~s~fflSleD 618 (922)
T 1nkt_A 582 VLG----TER----HESRRIDNQLRGRSGRQG--DPGESRFYLSLGD 618 (922)
T ss_dssp EEE----CSC----CSSHHHHHHHHHTSSGGG--CCEEEEEEEETTS
T ss_pred EEe----ccC----CCCHHHHHHHhcccccCC--CCeeEEEEechhH
Confidence 999 888 999999999999999999 9999999987654
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.44 E-value=3.8e-07 Score=87.06 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=57.0
Q ss_pred ccccCCcc---EEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 8 ELDVFQKQ---ILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 8 ~F~~g~ik---vLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
+|++|... +|++|.+++.|+|+++.+.||+ ||. |.++..+.|++||++|.|..+...++-++..+
T Consensus 461 ~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~----~d~----~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 461 RFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FDP----DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CSC----CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HhcCCCCCcEEEEEecccccCCcccccCCEEEE----ECC----CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 37777654 8999999999999999999999 999 99999999999999999987777777666654
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.1e-06 Score=85.76 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=57.6
Q ss_pred ccccCCc---cEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCCCceEEEEeecCCC
Q psy2759 8 ELDVFQK---QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEEL 81 (229)
Q Consensus 8 ~F~~g~i---kvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~~ 81 (229)
.|++|.. .+|++|.+++.|||+|+.++||. ||. +.+|..+.|++||++|.|..+...++-++..+.
T Consensus 617 ~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~----~D~----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI----FDS----DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp TTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE----SSC----CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred HhhCCCCCceEEEEecccccCCCCccccceEEE----ecC----CCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 4676554 49999999999999999999999 999 999999999999999999888888887766553
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.30 E-value=5.4e-07 Score=90.33 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=55.1
Q ss_pred ccccCCccEEEechhhhcccCCCCceEEEccCcccCCCCCCCCCHHHHHHhhcccCCCCCC--CceEEEEeecC
Q psy2759 8 ELDVFQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLD--ESGTVIIMCKE 79 (229)
Q Consensus 8 ~F~~g~ikvLvaT~t~a~Gin~pa~~vVi~~~~~~d~~~~rp~~~~~y~q~~GRAGR~g~d--~~G~~i~l~~~ 79 (229)
+|++|.++|||+|+.++.|+|.|...+++ +|- |++...|+|++||++|.+.+ ..|.++-+...
T Consensus 644 ~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDk----pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 644 RVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDK----NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EES----CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHHcCCCeEEEEcchHHhCcCcccccEEE-----Ecc----CCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 38899999999999999999999997655 776 99999999999999998843 46999988764
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.022 Score=52.89 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=28.1
Q ss_pred cccCCccEEE--echhhhcccCCCC----ceEEEc-cCcccCCCCCCCCC--------------------------HHHH
Q psy2759 9 LDVFQKQILF--ATETFAMGVNMPA----RTVAFD-STRKYDGSERRDLN--------------------------PAEY 55 (229)
Q Consensus 9 F~~g~ikvLv--aT~t~a~Gin~pa----~~vVi~-~~~~~d~~~~rp~~--------------------------~~~y 55 (229)
|++|. .||+ ||..++.|||+|. .+.||. ++- |.. |.+ ...+
T Consensus 425 f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lP-f~~----~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 498 (540)
T 2vl7_A 425 MKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLP-YPN----VSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVI 498 (540)
T ss_dssp HHTSC-CEEEEEC---------------CEEEEEEESCC-CCC----TTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HhcCC-eEEEEEecCceecceecCCCcccccEEEEECCC-CCC----CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 55543 5777 8999999999997 454544 322 211 111 2456
Q ss_pred HHhhcccCCCCCCCceEEEEe
Q psy2759 56 IQMAGRAGRRGLDESGTVIIM 76 (229)
Q Consensus 56 ~q~~GRAGR~g~d~~G~~i~l 76 (229)
.|-+||+-|...| .|.++++
T Consensus 499 ~Q~~GR~iR~~~D-~g~v~ll 518 (540)
T 2vl7_A 499 KQTIGRAFRDPND-YVKIYLC 518 (540)
T ss_dssp HHHHHHHCCSTTC-CCEEEEE
T ss_pred HHHhCCcccCCCc-cEEEEEE
Confidence 7999999998654 7766654
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=86.98 E-value=4.5 Score=40.13 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHhhcccCCCCCCCceEEEEeecCC
Q psy2759 47 RRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80 (229)
Q Consensus 47 ~rp~~~~~y~q~~GRAGR~g~d~~G~~i~l~~~~ 80 (229)
.|+-|..-=.|.-|||||-| +.|.+-++.+-+
T Consensus 667 eRhESrRIDnQLRGRaGRQG--DPGsSrF~LSLe 698 (997)
T 2ipc_A 667 ERHESRRIDNQLRGRAGRQG--DPGGSRFYVSFD 698 (997)
T ss_dssp SCCSSHHHHHHHHHTSSCSS--CCCEEEEEEESS
T ss_pred cCCchHHHHHHHhcccccCC--CCCCeEEEEECC
Confidence 34556666789999999999 889988776644
No 73
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.05 E-value=1.7 Score=30.18 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=25.0
Q ss_pred hcCCCCcEEEEecCCcccceEEEEEe-cCccc
Q psy2759 196 NAIVPGIVLHIWTLEHRDKLGLLLKV-DHRRA 226 (229)
Q Consensus 196 ~~l~~Gr~v~~~~~~~~~~~gi~~~~-~~~~~ 226 (229)
.++.+|||+.+..+.....+++|++. |.+.+
T Consensus 2 ~~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~v 33 (83)
T 3j21_5 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFV 33 (83)
T ss_dssp -CCCTTEEEECSSSSSSCCCEEEEEECSSSCE
T ss_pred CccccCEEEEEeecCCCCCEEEEEEEcCCCEE
Confidence 48899999999999888889999985 55443
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=76.14 E-value=3.4 Score=38.02 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=39.3
Q ss_pred cEEEec--hhhhcccCCC------CceEEEccCcccCC----------------C-CC-CCC---CHHHHHHhhcccCCC
Q psy2759 15 QILFAT--ETFAMGVNMP------ARTVAFDSTRKYDG----------------S-ER-RDL---NPAEYIQMAGRAGRR 65 (229)
Q Consensus 15 kvLvaT--~t~a~Gin~p------a~~vVi~~~~~~d~----------------~-~~-rp~---~~~~y~q~~GRAGR~ 65 (229)
-||+|| ..|..|||+| .+.|||.++-.-.. . ++ ..+ ....+.|-+||+=|.
T Consensus 439 ~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~ 518 (551)
T 3crv_A 439 VLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRD 518 (551)
T ss_dssp CEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCS
T ss_pred eEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccC
Confidence 799998 5999999999 36677765442111 0 11 001 234566999999988
Q ss_pred CCCCceEEEEe
Q psy2759 66 GLDESGTVIIM 76 (229)
Q Consensus 66 g~d~~G~~i~l 76 (229)
..| .|.++++
T Consensus 519 ~~D-~G~v~ll 528 (551)
T 3crv_A 519 VND-KCNVWLL 528 (551)
T ss_dssp TTC-EEEEEEE
T ss_pred CCc-cEEEEEe
Confidence 644 7766655
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=72.13 E-value=2.7 Score=39.58 Aligned_cols=63 Identities=19% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCccEEEech--hhhcccCCCC---ceEEEccCcccCCCC-----------------CC-CC---CHHHHHHhhcccCCC
Q psy2759 12 FQKQILFATE--TFAMGVNMPA---RTVAFDSTRKYDGSE-----------------RR-DL---NPAEYIQMAGRAGRR 65 (229)
Q Consensus 12 g~ikvLvaT~--t~a~Gin~pa---~~vVi~~~~~~d~~~-----------------~r-p~---~~~~y~q~~GRAGR~ 65 (229)
+.-.||++|. .|..|||+|. +.|||.++- |.... +. .+ ......|-+||+=|.
T Consensus 493 ~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lP-fp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~ 571 (620)
T 4a15_A 493 RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLP-FPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRS 571 (620)
T ss_dssp TSCCEEEEETTSCC--------CCCCEEEESSCC-CCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCS
T ss_pred cCCcEEEEEecCceeccccCCCCceEEEEEEcCC-CCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccC
Confidence 6678999985 8999999996 557776544 22200 00 00 123457999999997
Q ss_pred CCCCceEEEEe
Q psy2759 66 GLDESGTVIIM 76 (229)
Q Consensus 66 g~d~~G~~i~l 76 (229)
..| .|.++++
T Consensus 572 ~~D-~G~v~ll 581 (620)
T 4a15_A 572 AED-TGACVIL 581 (620)
T ss_dssp TTC-CEEEEEE
T ss_pred CCc-eEEEEEE
Confidence 744 7766665
No 76
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=71.43 E-value=3 Score=29.66 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=25.1
Q ss_pred hcCCCCcEEEEecCCcccceEEEEEe-cCccc
Q psy2759 196 NAIVPGIVLHIWTLEHRDKLGLLLKV-DHRRA 226 (229)
Q Consensus 196 ~~l~~Gr~v~~~~~~~~~~~gi~~~~-~~~~~ 226 (229)
.++++|||+.+..+.+....+|+++. ++..+
T Consensus 2 ~~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~v 33 (96)
T 2joy_A 2 PAIEVGRICVKVKGREAGSKCVIVDIIDDNFV 33 (96)
T ss_dssp CSSSTTEEEECSSSSTTCCEEEEEEECSSSCE
T ss_pred CccccCEEEEEeecCCCCCEEEEEEEeCCCEE
Confidence 36899999999999887889999987 55443
No 77
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=65.36 E-value=5.1 Score=30.46 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.8
Q ss_pred HhhcCCCCcEEEEecCCcccceEEEEEe
Q psy2759 194 FKNAIVPGIVLHIWTLEHRDKLGLLLKV 221 (229)
Q Consensus 194 ~~~~l~~Gr~v~~~~~~~~~~~gi~~~~ 221 (229)
..+|+.+|||+.+..|.....+++|+++
T Consensus 11 f~rfve~GrVV~i~~Gr~aGk~avIV~i 38 (138)
T 3izc_N 11 NWRLVEVGRVVLIKKGQSAGKLAAIVEI 38 (138)
T ss_dssp CCCCSSTTEEEECCSCSSSCCEEEEEEE
T ss_pred hhhhcccCeEEEEeeCCCCCCEEEEEEE
Confidence 4579999999999999888889999986
No 78
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=35.18 E-value=37 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHhhcCCCCcEEEEecCCcccceEEEEEecCccc
Q psy2759 192 AEFKNAIVPGIVLHIWTLEHRDKLGLLLKVDHRRA 226 (229)
Q Consensus 192 ~~~~~~l~~Gr~v~~~~~~~~~~~gi~~~~~~~~~ 226 (229)
+.+++.+.+|.=|+|..+.+...-|.|++++.+.+
T Consensus 12 ~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~v 46 (69)
T 2do3_A 12 QELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFV 46 (69)
T ss_dssp CCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCE
T ss_pred HHceeeccCCCeEEEeccEEcCceEEEEEEeCCEE
Confidence 34568899999999999988888999999976643
No 79
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=34.29 E-value=10 Score=20.23 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=7.2
Q ss_pred hhcccCCCC
Q psy2759 58 MAGRAGRRG 66 (229)
Q Consensus 58 ~~GRAGR~g 66 (229)
-+||+||+.
T Consensus 8 ~~~RtGRRN 16 (26)
T 1cmk_I 8 ASGRTGRRN 16 (26)
T ss_pred hcCcccccc
Confidence 478999985
No 80
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=27.59 E-value=74 Score=27.44 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=32.7
Q ss_pred CccEEEechhhhcccC-----CCCceEEEccCcccCCCCCCCCCHH-HHHHhhcccCCC--CCCCceEEEEeecCC
Q psy2759 13 QKQILFATETFAMGVN-----MPARTVAFDSTRKYDGSERRDLNPA-EYIQMAGRAGRR--GLDESGTVIIMCKEE 80 (229)
Q Consensus 13 ~ikvLvaT~t~a~Gin-----~pa~~vVi~~~~~~d~~~~rp~~~~-~y~q~~GRAGR~--g~d~~G~~i~l~~~~ 80 (229)
...+-+.|+..+-|+| .-+..+||- ||. ..++. +.+|-+-||-|. |..+.-.++-++...
T Consensus 170 ~~~i~Lltsag~~gin~~~~nl~~aD~VI~----~Ds----dwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 170 SCTVHLFSSEGINFTKYPIKSKARFDMLIC----LDT----TVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp SEEEEEEESSCCCTTTSCCCCCSCCSEEEE----CST----TCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CceEEEEECCCCCCcCcccccCCCCCEEEE----ECC----CCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 3444444666566786 455666776 888 65554 357877777776 334555666555543
No 81
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=23.97 E-value=2.2e+02 Score=20.98 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=14.5
Q ss_pred HHHHcHHHHhhcCCCCcEEEEecCC
Q psy2759 186 SLVEKTAEFKNAIVPGIVLHIWTLE 210 (229)
Q Consensus 186 ~~~~~~~~~~~~l~~Gr~v~~~~~~ 210 (229)
.++..+. -++||+...|.++.
T Consensus 72 SYLvDp~----~f~~G~~Y~i~d~~ 92 (128)
T 1sf9_A 72 AYLLNPE----DYSPGETYRVENTE 92 (128)
T ss_dssp HHHSCGG----GSCTTCEEEETTSS
T ss_pred HHcCCHh----hccCCCEEEecCCC
Confidence 4555554 67799999987554
No 82
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=22.37 E-value=77 Score=23.50 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=19.8
Q ss_pred hhcCCCCcEEEEecCCcccceEEEEE
Q psy2759 195 KNAIVPGIVLHIWTLEHRDKLGLLLK 220 (229)
Q Consensus 195 ~~~l~~Gr~v~~~~~~~~~~~gi~~~ 220 (229)
...++||.||....++...-.||.++
T Consensus 65 ~~~l~pGDLvFf~~~~~~~HVGIyiG 90 (135)
T 2k1g_A 65 RSNLRTGDLVLFRAGSTGRHVGIYIG 90 (135)
T ss_dssp GGGCCTTEEEEEEETTTEEEEEEEEE
T ss_pred HHHccCCcEEEECCCCCCeEEEEEec
Confidence 35799999999987765456777765
Done!