RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2759
(229 letters)
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 67.2 bits (163), Expect = 2e-14
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 15 QILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGTVI 74
+++ AT T A GVN+PAR V S ++DG + + +EY QMAGRAGR G+DE G I
Sbjct: 122 KVVVATPTLAAGVNLPARRVIVRSLYRFDG-YSKRIKVSEYKQMAGRAGRPGMDERGEAI 180
Query: 75 IMCKEELPGQEALKKMMLGK 94
I+ + + A+K+ + G+
Sbjct: 181 IIVGKR-DREIAVKRYIFGE 199
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 37.2 bits (85), Expect = 8e-04
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 1 MAHTWPFELDVFQKQILFATETFAMGVNMPARTVA-----------FDSTRKYDGSERRD 49
+ + + T+ MG N A V D + +
Sbjct: 212 TFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMP 271
Query: 50 LNPAEYIQMAGRAGRRG 66
+ + Q GR GR
Sbjct: 272 VTHSSAAQRRGRVGRNP 288
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 12 FQKQILFATETFAMGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESG 71
++ AT+ G +V + S+ + + Q GR GR + G
Sbjct: 77 NGDVVVVATDALMTGFTGDFDSVID-----CNTSDGKPQDAVSRTQRRGRTGR---GKPG 128
Query: 72 TVIIMCKEE 80
+ E
Sbjct: 129 IYRFVAPGE 137
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 35.0 bits (80), Expect = 0.005
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 12 FQKQILFATETFAMGVNMPARTV----------AFDSTRKYDGSERRDLNPAEYIQMAGR 61
+ + AT+ MG N+ V D RK ++ + Q GR
Sbjct: 81 KKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 140
Query: 62 AGRRG 66
GR
Sbjct: 141 IGRNP 145
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 33.7 bits (76), Expect = 0.014
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
Query: 15 QILFATETFAMGVNMP-ARTVA-FDSTRKYDGSERRDLNPAEYIQMAGRAGRRGLDESGT 72
+L AT G+++P V ++ + IQ GR GR G
Sbjct: 221 NVLVATSVGEEGLDVPEVDLVVFYEPVP----------SAIRSIQRRGRTGRHM---PGR 267
Query: 73 VIIMC 77
VII+
Sbjct: 268 VIILM 272
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 29.9 bits (66), Expect = 0.19
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 51 NPAEYIQMAGRAGRRGLDESGTVII 75
+ EYIQ GR R + V+
Sbjct: 168 SAREYIQRLGRILRPSKGKKEAVLY 192
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 26.4 bits (58), Expect = 2.7
Identities = 6/56 (10%), Positives = 12/56 (21%), Gaps = 11/56 (19%)
Query: 13 QKQILFATETFA---MGVNMPARTVAFDSTRKYDGSERRDLNPAEYIQMAGRAGRR 65
+ T + ++ + + Q GR GR
Sbjct: 96 DFDSVIDCNTCVTQTVDFSLDPTFTI----ETTTLPQ----DAVSRTQRRGRTGRG 143
>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus
licheniformis [TaxId: 1402]}
Length = 90
Score = 24.2 bits (53), Expect = 5.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 61 RAGRRGLDESGTVIIMCKEELPGQEALKKMMLGKQ 95
R G + SG ++ G K+M +G+Q
Sbjct: 20 REGDSSVANSGLAALITD----GPGGAKRMYVGRQ 50
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 24.8 bits (54), Expect = 7.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 44 GSERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEELP---GQEALKKMM 91
G+ER + + Q+ GR+GR+G + ++EL G E M+
Sbjct: 114 GTERHE-SRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAML 163
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
pneumophila [TaxId: 446]}
Length = 197
Score = 24.8 bits (54), Expect = 8.7
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 102 FRLTYAMILNLMRVSMVNVEEMMSMSFKEFGSRFRMQKNKEDLAQ 146
+ L + I+ + ++ E M+ R N D
Sbjct: 133 YLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDA 177
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.6 bits (52), Expect = 9.9
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 45 SERRDLNPAEYIQMAGRAGRRGLDESGTVIIMCKEE 80
+ + + Y+ GR GR G + G M + +
Sbjct: 112 KQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVD 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.387
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 819,908
Number of extensions: 36473
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 15
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.2 bits)