BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2760
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 89/120 (74%), Gaps = 2/120 (1%)
Query: 164 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKT 223
+ EWA ++D++ + +FD +P A +WPFELD FQK+A+ LE+ + VFV AHTSAGKT
Sbjct: 9 KKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKT 68
Query: 224 VIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV--GLIDDLPPVFPDVEKLL 281
V+AEYAIA++ + T+TIYTSPIKALSNQK+RDF+ETF DV GLI + PD L+
Sbjct: 69 VVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLI 128
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 63/94 (67%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PF LD FQ AI ++ V V+AHTSAGKTV+AEYAIA S +K R IYTSPIK
Sbjct: 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 139
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYR+ F DVGL+ + PD L+
Sbjct: 140 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLV 173
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 63/94 (67%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PF LD FQ AI ++ V V+AHTSAGKTV+AEYAIA S +K R IYTSPIK
Sbjct: 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 237
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYR+ F DVGL+ + PD L+
Sbjct: 238 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLV 271
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 210 NHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263
++VFV A T +GKT+ AE+AI L Q+ + R +Y +P++AL+ Q Y D+ E FQD
Sbjct: 943 DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 998
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 210 NHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263
++VFV A T +GKT+ AE+AI L Q+ + R +Y +P++AL+ Q Y D+ E FQD
Sbjct: 943 DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 998
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAI-ALSQNHKTRTIYTSPIKALSNQKYRD 256
Q +A+ K L E N + +T+ T +GKT+IAE I + + + IY +P++AL+N+KY
Sbjct: 35 QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLT 94
Query: 257 FRE 259
F++
Sbjct: 95 FKD 97
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 199 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 258
Q +A+ K+ ++ + T+AGKT++AE A+ +++Y P++AL+ +KY F+
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89
Query: 259 ETFQDVGL 266
+ ++ +GL
Sbjct: 90 K-WEKIGL 96
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 208 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 264
E + ++ T++GKT+IAE A+ L+Q K +Y P+KAL+ +K+++F++ ++ +
Sbjct: 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGK--AVYIVPLKALAEEKFQEFQD-WEKI 94
Query: 265 GL 266
GL
Sbjct: 95 GL 96
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 186 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245
+ A T FE++V ++ E++ + +G + AL Q P
Sbjct: 204 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ----------P 253
Query: 246 IKALSNQKYRDFRETFQDVGLIDD----LPPVFPDVEKLLE----DLNIGGLDE--LSIH 295
I+ + + + F+DV DD L P P + +E D+ L E L+I
Sbjct: 254 IRKIQSATH------FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIK 307
Query: 296 DFNKHLKFWKPKVQLDDLF 314
DF K +K +P V DDL
Sbjct: 308 DFLKAIKSTRPTVNEDDLL 326
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 186 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245
+ A T FE++V ++ E++ + +G + AL Q P
Sbjct: 195 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ----------P 244
Query: 246 IKALSNQKYRDFRETFQDVGLIDD----LPPVFPDVEKLLE----DLNIGGLDE--LSIH 295
I+ + + + F+DV DD L P P + +E D+ L E L+I
Sbjct: 245 IRKIQSATH------FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIK 298
Query: 296 DFNKHLKFWKPKVQLDDLF 314
DF K +K +P V DDL
Sbjct: 299 DFLKAIKSTRPTVNEDDLL 317
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 186 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245
+ A T FE++V ++ E++ + +G + AL Q P
Sbjct: 186 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ----------P 235
Query: 246 IKALSNQKYRDFRETFQDVGLIDD----LPPVFPDVEKLLE----DLNIGGLDE--LSIH 295
I+ + + + F+DV DD L P P + +E D+ L E L+I
Sbjct: 236 IRKIQSATH------FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIK 289
Query: 296 DFNKHLKFWKPKVQLDDLF 314
DF K +K +P V DDL
Sbjct: 290 DFLKAIKSTRPTVNEDDLL 308
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 26/139 (18%)
Query: 186 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245
+ A T FE++V +++ E++ + +G + AL Q P
Sbjct: 219 LAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ----------P 268
Query: 246 IKALSNQKYRDFRETFQDVGLIDD----LPPVFPDVEKLLE----DLNIGGLDE--LSIH 295
I+ + + + F+DV DD L P P + +E D+ L E L+I
Sbjct: 269 IRKIQSATH------FKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIK 322
Query: 296 DFNKHLKFWKPKVQLDDLF 314
DF K +K +P V DDL
Sbjct: 323 DFLKAIKSTRPTVNEDDLL 341
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 190 TWPFELDVFQKQAIIKL------EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243
+ PF+L QK+A ++ E+ + + +GKTV+A+ AI + +T +
Sbjct: 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM 423
Query: 244 SPIKALSNQKYRDFRETF 261
P L+ Q YR E+F
Sbjct: 424 VPTSILAIQHYRRTVESF 441
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 106 SKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLPKHVTQT 165
SKF GLW S++ I G ++ A + SN +E+ + +++P L N+ K+ ++
Sbjct: 212 SKFSHGLWISYDPIGGSQPNDRFGA-IMQSNLKES----RNLEMPTLMTYNSKEKYASRW 266
Query: 166 EWAEMLDVSKPVLDFDAKVP 185
A + V+ F+A++P
Sbjct: 267 SAAPNVIVNDMWEIFNAQIP 286
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 106 SKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLPKHVTQT 165
SKF GLW S++ I G ++ A + SN +E+ + +++P L N+ K+ ++
Sbjct: 221 SKFSHGLWISYDPIGGSQPNDRFGA-IMQSNLKES----RNLEMPTLMTYNSKEKYASRW 275
Query: 166 EWAEMLDVSKPVLDFDAKVP 185
A + V+ F+A++P
Sbjct: 276 SAAPNVIVNDMWEIFNAQIP 295
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 106 SKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLPKHVTQT 165
SKF GLW S++ I G ++ A + SN +E+ + +++P L N+ K+ ++
Sbjct: 220 SKFSHGLWISYDPIGGSQPNDRFGA-IMQSNLKES----RNLEMPTLMTYNSKEKYASRW 274
Query: 166 EWAEMLDVSKPVLDFDAKVP 185
A + V+ F+A++P
Sbjct: 275 SAAPNVIVNDMWEIFNAQIP 294
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 22/151 (14%)
Query: 104 NASKFEQGLWESHEVIS----GDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLP 159
A F G++ + V++ GD E + +F S + VI ++ +P +S L
Sbjct: 48 RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL- 106
Query: 160 KHVTQTEWAEMLDVSKPVLDF--DAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAH 217
W E P ++ D + H F +D + I KLE NH+FV
Sbjct: 107 -----APWIERRLRYHPTIELPDDTR----GHILIFGIDPITRTLIRKLESRNHLFVVVT 157
Query: 218 TSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248
+ + A+ L + + +Y SP A
Sbjct: 158 DN------YDQALHLEEQEGFKVVYGSPTDA 182
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
Length = 208
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 44 GPRIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPKVQLVAGIINLIQLGGE 103
GP + +L FPD + NI D DF K +K K ++AG++ + +
Sbjct: 66 GPLVPELKAQFPDAPYIARPGNINAWDN---EDFVKAVKATGKKQLIIAGVVTEVCVAFP 122
Query: 104 NASKFEQGL 112
S E+G
Sbjct: 123 ALSAIEEGF 131
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 23 PRGGLFWDTLYEYDVITILDPGPRIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKHL 81
P G +D YDV L R+D++P + D EK G D + IH N +L
Sbjct: 124 PGLGHTYDGKKPYDVARAL----RLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYL 178
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 104 NASKFEQGLWESHEVIS----GDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLP 159
A F G++ + V++ GD E + +F S + VI + +P +S L
Sbjct: 48 RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILPFGFVSMFL- 106
Query: 160 KHVTQTEWAEMLDVSKPVLDF--DAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAH 217
W E P ++ D + H F +D + I KLE NH+FV
Sbjct: 107 -----APWIERRLRYHPTIELPDDTR----GHILIFGIDPITRTLIRKLESRNHLFVVVT 157
Query: 218 TSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248
+ + A+ L + + +Y SP A
Sbjct: 158 DN------YDQALHLEEQEGFKVVYGSPTDA 182
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 227 EYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263
E A S+ KT T T+ IKA ++KYR F + + D
Sbjct: 499 EAXAAXSRIGKTVTPQTNKIKAYYDRKYRVFHQXYHD 535
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,573,248
Number of Sequences: 62578
Number of extensions: 466464
Number of successful extensions: 980
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 32
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)