BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2760
(333 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats.
Identities = 93/241 (38%), Positives = 125/241 (51%), Gaps = 26/241 (10%)
Query: 67 GGLDELSIHDFNKH------LKFWKPKVQLVAGIINLIQLGGENASKFEQGLWESHEVIS 120
GG+DE +I D N + F K + + G + ++ GL ++
Sbjct: 157 GGMDEPTITDLNTREEAEEEIDFEKDLLTIPPGFKKGMDFAPKDCPTPAPGLLSLSCMLE 216
Query: 121 ----GDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISN----------------TLPK 160
G E++ +A P + V P+ + S+ P+
Sbjct: 217 PLDLGGGDEDENEAVGQPGGPRGDTVSASPCSAPLARASSLEDLVLKEASTAVSTPEAPE 276
Query: 161 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSA 220
+Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHTSA
Sbjct: 277 PPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSA 336
Query: 221 GKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKL 280
GKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+ L
Sbjct: 337 GKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCL 396
Query: 281 L 281
+
Sbjct: 397 I 397
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 102/147 (69%), Gaps = 6/147 (4%)
Query: 138 EENNVIPQEVDIPILK-ISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELD 196
E + ++P +D K +S ++P + EWA ++D++ + +FD +P A +WPFELD
Sbjct: 275 EIDELLPIGIDFGRTKPVSKSVP---VKKEWAHVVDLNHKIENFDELIPNPARSWPFELD 331
Query: 197 VFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRD 256
FQK+A+ LE+ + VFV AHTSAGKTV+AEYAIA++ + T+TIYTSPIKALSNQK+RD
Sbjct: 332 TFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRD 391
Query: 257 FRETFQDV--GLIDDLPPVFPDVEKLL 281
F+ETF DV GLI + PD L+
Sbjct: 392 FKETFDDVNIGLITGDVQINPDANCLI 418
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 86/118 (72%)
Query: 164 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKT 223
Q ++A ++D S P+ +F VP MA +PFELD FQK+AI LE + VFV AHTSAGKT
Sbjct: 250 QPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKT 309
Query: 224 VIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
V+AEYAIAL+Q H T+ IYTSPIKALSNQK+RDF+ F+DVG++ V P+ LL
Sbjct: 310 VVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLL 367
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 66/94 (70%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A +PF+LD FQKQAI+ ++ + V V+AHTSAGKTV+A YAIA K R IYTSPIK
Sbjct: 119 AKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIK 178
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYR+ E F+DVGL+ + PD L+
Sbjct: 179 ALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLV 212
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 178 LDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK 237
L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAIAL+ K
Sbjct: 123 LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK 182
Query: 238 TRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 183 QRVIFTSPIKALSNQKYREMYEEFQDVGLM 212
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 63/85 (74%)
Query: 183 KVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 242
+V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAIAL+ K R I+
Sbjct: 126 RVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF 185
Query: 243 TSPIKALSNQKYRDFRETFQDVGLI 267
TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 186 TSPIKALSNQKYREMYEEFQDVGLM 210
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 62/94 (65%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PF LD FQ +I +E V V+AHTSAGKTV+AEYA+A S K R IYTSPIK
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYR+ F DVGL+ + PD L+
Sbjct: 252 ALSNQKYRELLAEFGDVGLMTGDVTINPDATCLV 285
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 63/94 (67%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PF LD FQ AI ++ V V+AHTSAGKTV+AEYAIA S +K R IYTSPIK
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYR+ F DVGL+ + PD L+
Sbjct: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLV 236
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 63/94 (67%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PFELD FQ AI +E V V+AHTSAGKTVIAEYAIA + ++ R IYTSPIK
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIK 178
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
+LSNQKYR+ F DVGL+ + P L+
Sbjct: 179 SLSNQKYRELLSEFGDVGLMTGDVSINPSASCLI 212
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 231
D ++D D + I + F +D FQ+ AI + V V+A TS+GKT+IAE A
Sbjct: 136 DFGVEMIDIDELISI----YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAV 191
Query: 232 LSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLI 267
+ R YT+P+KALSNQK+R+FRETF D VGL+
Sbjct: 192 STVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLL 229
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 251
PF LD FQ++A LE + V V A T AGKTV+ E+A+ L+ + YT+P+KALSN
Sbjct: 15 PFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSN 74
Query: 252 QKYRDF--RETFQDVGLI 267
QKY D R +GL+
Sbjct: 75 QKYTDLTARYGRNRIGLL 92
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 251
PF LD FQ++A LE + V V A T AGKTV+ E+A+ L+ ++ YT+P+KALSN
Sbjct: 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSN 74
Query: 252 QKYRDF--RETFQDVGLI 267
QK+ D R +GL+
Sbjct: 75 QKHTDLTARYGRDQIGLL 92
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 210 NHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263
++VFV A T +GKT+ AE+AI L Q+ + R +Y +P++AL+ Q Y D+ E FQD
Sbjct: 1344 DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 1399
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252
FEL Q+ AI + + ++ V+ T+AGKT+IA AI + K ++IY P+++L+ +
Sbjct: 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAME 80
Query: 253 KYRDFRETFQ-------DVGLIDDLP 271
KY + + +G DD P
Sbjct: 81 KYEELSRLRELGMRVKLSIGNYDDTP 106
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 169 EMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY 228
E LD+ V F IM +P + + +K L E ++ T++GKT++AE
Sbjct: 4 ESLDLPDEVKQFYLNSGIM-ELYPPQAEAVEK----GLLEGRNLLAAIPTASGKTLLAEL 58
Query: 229 AIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 266
A+ S + +Y P++AL+++K+R FRE F ++G+
Sbjct: 59 AMLKSILAGGKALYIVPLRALASEKFRRFRE-FSELGI 95
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252
F+L Q+ AI ++ + +V V+ T+AGKT+IA AI + ++IY P+++L+ +
Sbjct: 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAME 80
Query: 253 KYRDFRETFQDVGL 266
K+ + +D+GL
Sbjct: 81 KFSEL-SRLRDLGL 93
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAI-ALSQNHKTRTIYTSPIKALSNQKYRD 256
Q +A+ K L + N + +T+ T +GKT+IAE I + + + IY +P++AL+N+KY
Sbjct: 28 QTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLT 87
Query: 257 FRE 259
F++
Sbjct: 88 FKD 90
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKY 254
Q +AI K L + + VT+ T++GKT+IAE + LS+ K IY +P++AL+N+KY
Sbjct: 31 QSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKA--IYITPLRALTNEKY 88
Query: 255 RDFRE 259
F++
Sbjct: 89 NTFKD 93
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 250
F+ D +Q++ + L+ VFV A TS+GKT I+ YA+ L N IY +P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 251 NQ 252
NQ
Sbjct: 794 NQ 795
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 115 SHEVISGDAKEEQEKAT--VFPSNEEE----NNVIPQEVDIPILKISNTLPKHVTQTEWA 168
S+ V S +A++E KA + P + N + Q+ + K S++ +++ + A
Sbjct: 66 SNFVTSKEAQKEAMKADSDICPPQQMAFNLFNETVVQKDMLNKEKFSHSASSNISNKDDA 125
Query: 169 EMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFV-TAHTSAGKTVIAE 227
+ + PV + + + +P+ + Q +A+ L + FV A T +GKTVI E
Sbjct: 126 QY-GIVTPVTEIPKQFRTVFKEFPY-FNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFE 183
Query: 228 YAIA--LSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGL 266
AI L Q + +Y +PIKAL Q+Y D++ F VGL
Sbjct: 184 LAIIRLLMQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKFGPVGL 228
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257
Q +A+ K L E ++ T++GKT++AE A+ S + + +Y P++AL+++K+R F
Sbjct: 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEKFRRF 87
Query: 258 RETFQDVGL 266
+E F +G+
Sbjct: 88 QE-FSVLGM 95
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 208 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 264
E ++ V T++GKT+IAE AIA L + K +Y P+KAL+ +K+R+F++ ++ +
Sbjct: 38 EGENLLVAIPTASGKTLIAEIAIANKLLEEGGKA--VYIVPLKALAEEKFREFKD-WERL 94
Query: 265 GL 266
GL
Sbjct: 95 GL 96
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257
Q +A+ K L E ++ T++GKT++AE A+ S + +Y P++AL+++K+R F
Sbjct: 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYIVPLRALASEKFRRF 87
Query: 258 RETFQDVGL 266
++ F ++G+
Sbjct: 88 QD-FSELGI 95
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 199 QKQAI-IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257
Q +A+ + E ++ + T++GKT+IAE A+ S + +Y P++AL+++K DF
Sbjct: 29 QAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASEKQADF 88
Query: 258 RETFQDVGL 266
E F+ GL
Sbjct: 89 EE-FEQYGL 96
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYA-IALSQNHKTRTIYTSPIKALSNQKYRD 256
Q +A+ K L E + +T T++GKT++AE I+ N + IY +P++AL+++KY
Sbjct: 31 QTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYST 90
Query: 257 FRE 259
F++
Sbjct: 91 FKD 93
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 265
L + ++ V T++GKT+IAE A+ + + +Y P+KAL+++KY +F VG
Sbjct: 36 LLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVG 95
Query: 266 L 266
L
Sbjct: 96 L 96
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 120 SGDAKEEQEKATVFPSNEEENNVIPQEVDIPILK---ISNTLPKHVTQTEWAEMLDVSKP 176
S ++ Q A VF +N N E+ + K S H Q L K
Sbjct: 207 SNSKQKFQYSANVFTAN---NAFSASEIGEGMFKAPSFSVAFQPHDIQEVTENGLGSLKA 263
Query: 177 VLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFV-TAHTSAGKTVIAEYAIALSQN 235
V + AK + +P+ + Q +A L + FV A T +GKTV+ E AI
Sbjct: 264 VTEIPAKFRSIFKEFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLM 322
Query: 236 H------KTRTIYTSPIKALSNQKYRDFRETFQDVGL 266
+ +Y +PIKAL +Q++ D++E F +GL
Sbjct: 323 EVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGL 359
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 199 QKQAIIK--LEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRT----IYTSPIKALS 250
QK+A+ + L+++ + ++ T++GKT+I E A+ L +K T I+ P+KAL+
Sbjct: 20 QKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALA 79
Query: 251 NQKYRDFRETFQDVGL 266
++KY +F+ ++ GL
Sbjct: 80 SEKYEEFKSKYERYGL 95
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 212 VFVTAHTSAGKTVIAEYAIALSQNHKT--RTIYTSPIKALSNQKYRDFRETFQDVGL 266
+ + + TS+GKT+I E A + KT + ++ P+ AL+NQKY +F+E ++ +G
Sbjct: 230 LLIISATSSGKTLIGELA-GIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGF 285
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 199 QKQAI-IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257
Q +AI + L E ++ T++GKT++AE A+ + + +Y P++AL+++K+ F
Sbjct: 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALASEKFERF 87
Query: 258 RE 259
+E
Sbjct: 88 KE 89
>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2
Length = 596
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 20/99 (20%)
Query: 176 PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTV-----IAEYAI 230
P DF A PI A WPF L V A T +GKT+ Y
Sbjct: 195 PFKDFKAPTPIQAAAWPF------------LLAGRDVIGVAETGSGKTMAFAVPCVRYMS 242
Query: 231 ALSQNHKT---RTIYTSPIKALSNQKYRDFRETFQDVGL 266
+L +N K R + SP + L+ Q Y + + GL
Sbjct: 243 SLPKNQKNKGPRAVVVSPTRELAMQSYEQIVKLAKASGL 281
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 208 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 264
E + ++ T++GKT+IAE A+ L+Q K +Y P+KAL+ +K+++F++ ++ +
Sbjct: 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGK--AVYIVPLKALAEEKFQEFQD-WEKI 94
Query: 265 GL 266
GL
Sbjct: 95 GL 96
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257
Q +AI + L + ++ T++GKT++AE A+ S + IY P+KAL+++KY F
Sbjct: 28 QAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEKYDRF 87
Query: 258 RE 259
E
Sbjct: 88 LE 89
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 185 PIMAHTWPFE-LDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRT 240
P++ +PF+ + Q L N + FV + T +GKT++AE AI A +
Sbjct: 1129 PLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKI 1188
Query: 241 IYTSPIKALSNQKYRDFRE 259
+Y +P+KAL ++ D+R+
Sbjct: 1189 VYIAPMKALVRERVDDWRK 1207
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans
GN=C28H8.3 PE=3 SV=2
Length = 1714
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 250
F D +Q++ + ++ N + A TSAGKT ++ Y I L + +Y +P KAL
Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842
Query: 251 NQ----KYRDFRETFQDVGL 266
NQ Y FR G+
Sbjct: 843 NQVCGSVYARFRNKSMKRGI 862
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 209 HNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 265
++ VF+ A +GKTV AE A+ SQ +Y +PI+ + +++Y ++ F D+G
Sbjct: 1380 NDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLG 1438
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 194 ELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252
+L+ FQK+A+ L ++ +TA T GK+ +A + ++ K+R +YT P++AL+ Q
Sbjct: 7 QLNEFQKKALQSFLMSDKNLLITAPTGTGKSFLA---MLMAMETKSRVVYTVPLRALALQ 63
Query: 253 KYRDF 257
DF
Sbjct: 64 LNDDF 68
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 211 HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRD 256
++FV A T +GKT+ AE A AL K++ +Y +P+KAL ++ +D
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKD 1199
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 186 IMAHTWPF--ELDVFQKQAIIK--LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 241
I+ +P EL+ Q+ AI LE ++ + T++GKT++ A + R I
Sbjct: 11 ILGDCYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGGRVI 70
Query: 242 YTSPIKALSNQKYRDFRE 259
YT P+ ++ N+K ++FR+
Sbjct: 71 YTVPLLSIQNEKIKEFRK 88
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%), Gaps = 6/59 (10%)
Query: 211 HVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 266
+ + T++GKT+IAE AI L + K +Y P+KAL+ +K+++F++ ++++GL
Sbjct: 41 NALIAIPTASGKTLIAEIAIVNRLLKEGGK--AVYLVPLKALAEEKFKEFKD-WEELGL 96
>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain
B05.10) GN=dbp3 PE=3 SV=1
Length = 592
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 152 LKISNTLPKHVTQTEWAEMLDVSK--PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH 209
L S TL + +T+ ++ + D ++ P DF A PI A WPF L
Sbjct: 177 LSTSATL-RPLTKFDYLPITDPAQRAPFKDFKAPTPIQAAAWPF------------LLAG 223
Query: 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 266
V A T +GKT+ +A+ N R + SP + L+ Q Y + + GL
Sbjct: 224 RDVIGVAETGSGKTMA--FAVPCI-NKGPRAVVVSPTRELAMQSYEQIVKLAKASGL 277
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 208 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRE 259
E ++ + T++GKT+++E + LS+ K +Y P+KAL+ +KYR+F+E
Sbjct: 38 EGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKA--VYLVPLKALAEEKYREFKE 90
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 161 HVTQTEWAEMLDVSKPVL---DFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAH 217
V TE ++ + K L DF++ +H P + VF +N+V + +
Sbjct: 1296 RVVNTELLDLQPLPKEALKNKDFESLFK-FSHFNPIQTQVFHTLYYT----NNNVLLGSP 1350
Query: 218 TSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263
T +GKT+ AE A+ + +Y +P+KAL ++ D++ FQ+
Sbjct: 1351 TGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQE 1398
>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0294 PE=3 SV=1
Length = 841
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 199 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEYA-----IALSQNHKTR----TIYTSPIKAL 249
Q+ AI ++ E +V + + T +GKT+ A A I LS +K +Y SP++AL
Sbjct: 39 QRYAIKEIHEGKNVLICSPTGSGKTLSAFLAGINELIKLSMENKLEDRIYILYVSPLRAL 98
Query: 250 SNQKYRDFRETFQDV 264
+N R+ +E +++
Sbjct: 99 NNDIERNLKEPLKEI 113
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 22/115 (19%)
Query: 174 SKPVLDFDAKVPIMAHTWPFE---------LDVFQKQAI-IKLEEHNHVFVTAHTSAGKT 223
SKPV+D++ K W E L+ Q + E +++ + A T +GKT
Sbjct: 469 SKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLICAPTGSGKT 528
Query: 224 VIAEYAI--ALSQNHKTRT----------IYTSPIKALSNQKYRDFRETFQDVGL 266
IA + ALS ++ +T +Y +P+KAL ++ R+F+ +G+
Sbjct: 529 NIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGI 583
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 194 ELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIAL------SQNHKTRTIYTSPI 246
E + Q +A + E N + +++ T +GKTV+ E AI S + T+ IY +P
Sbjct: 138 EFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPT 197
Query: 247 KALSNQKYRDFRETFQD--VGLI 267
K+L + Y+++ +F + VG++
Sbjct: 198 KSLCYEMYKNWFPSFVNLSVGML 220
>sp|Q8K4I6|CBY1_RAT Protein chibby homolog 1 OS=Rattus norvegicus GN=Cby1 PE=2 SV=1
Length = 127
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 98 IQLGGENASKFEQGLWESHEVISG--DAKEEQEKATVFPSNEEENNVIPQEVDIPILKIS 155
+ L G++ KFE G W + VISG D +E Q EEENN++ +VDI + +S
Sbjct: 45 MNLAGQSL-KFENGQWVADSVISGGVDRRETQRLRKRNQQLEEENNLLRLKVDILLDMLS 103
Query: 156 NTLPK-HVTQTEWAEM 170
T + H+ E E+
Sbjct: 104 ETTAESHLKDKELDEL 119
>sp|Q9D1C2|CBY1_MOUSE Protein chibby homolog 1 OS=Mus musculus GN=Cby1 PE=2 SV=1
Length = 127
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 98 IQLGGENASKFEQGLWESHEVISG--DAKEEQEKATVFPSNEEENNVIPQEVDIPILKIS 155
+ L G++ KFE G W + VISG D +E Q EEENN++ +VDI + +S
Sbjct: 45 MNLAGQSL-KFENGQWVADSVISGGVDRRETQRLRKRNQQLEEENNLLRLKVDILLDMLS 103
Query: 156 NTLPK-HVTQTEWAEM 170
T + H+ E E+
Sbjct: 104 ETTAESHLKDKELDEL 119
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum
GN=DDB_G0278827 PE=3 SV=1
Length = 1816
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALS 250
F+ D +Q + + +++ + A TS+GKT I+ Y L +++ ++ P KAL
Sbjct: 816 FKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFVCPTKALV 875
Query: 251 NQKY 254
NQ Y
Sbjct: 876 NQMY 879
>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DBP3 PE=3
SV=1
Length = 581
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 176 PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTV-----IAEYAI 230
P ++ A PI + +WPF L V A T +GKT+ E
Sbjct: 177 PFANYKAPTPIQSASWPFTLS------------GRDVIGVAETGSGKTMAFALPCVEAIS 224
Query: 231 ALSQNHKTRTIYTSPIKALSNQKY 254
AL H T+ + SP + L+ Q Y
Sbjct: 225 ALKHKH-TKAVVVSPTRELAMQTY 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,568,039
Number of Sequences: 539616
Number of extensions: 5824381
Number of successful extensions: 16043
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 15981
Number of HSP's gapped (non-prelim): 112
length of query: 333
length of database: 191,569,459
effective HSP length: 118
effective length of query: 215
effective length of database: 127,894,771
effective search space: 27497375765
effective search space used: 27497375765
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)