Query psy2760
Match_columns 333
No_of_seqs 302 out of 2291
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 00:30:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0947|consensus 99.9 7.4E-26 1.6E-30 236.3 12.5 164 159-322 262-443 (1248)
2 COG4581 Superfamily II RNA hel 99.9 1.4E-22 2.9E-27 217.3 10.0 137 186-322 111-269 (1041)
3 KOG0948|consensus 99.9 8.3E-22 1.8E-26 202.4 8.6 136 186-321 121-274 (1041)
4 TIGR00580 mfd transcription-re 99.8 4.5E-21 9.8E-26 207.1 3.5 221 73-327 355-613 (926)
5 PRK10689 transcription-repair 99.8 2.8E-20 6E-25 204.8 4.0 222 73-328 504-763 (1147)
6 PRK02362 ski2-like helicase; P 99.8 7E-19 1.5E-23 187.1 13.4 145 172-322 7-180 (737)
7 COG1197 Mfd Transcription-repa 99.8 3.9E-19 8.5E-24 191.3 5.7 226 61-324 490-753 (1139)
8 COG1204 Superfamily II helicas 99.7 2E-17 4.3E-22 175.9 11.9 130 173-308 16-169 (766)
9 PRK04837 ATP-dependent RNA hel 99.7 5.8E-17 1.3E-21 161.6 13.8 124 172-301 14-173 (423)
10 PRK00254 ski2-like helicase; P 99.7 4.7E-17 1E-21 172.8 13.5 145 172-322 7-178 (720)
11 PRK01172 ski2-like helicase; P 99.7 5.1E-17 1.1E-21 171.2 13.6 130 172-308 7-158 (674)
12 TIGR03817 DECH_helic helicase/ 99.7 8E-17 1.7E-21 171.5 14.4 129 163-299 13-171 (742)
13 PRK10590 ATP-dependent RNA hel 99.7 5.8E-17 1.3E-21 163.5 12.1 125 171-301 6-165 (456)
14 PRK10917 ATP-dependent DNA hel 99.7 5.7E-17 1.2E-21 171.2 10.8 135 189-325 256-421 (681)
15 PRK11192 ATP-dependent RNA hel 99.7 2.2E-16 4.7E-21 157.8 14.2 124 172-301 7-163 (434)
16 TIGR00643 recG ATP-dependent D 99.7 6.2E-17 1.3E-21 169.5 10.1 138 189-326 230-399 (630)
17 PRK11776 ATP-dependent RNA hel 99.7 2E-16 4.4E-21 159.3 13.5 124 172-301 10-163 (460)
18 PRK01297 ATP-dependent RNA hel 99.7 2.1E-16 4.5E-21 160.1 13.5 125 171-301 92-253 (475)
19 PLN00206 DEAD-box ATP-dependen 99.7 1.7E-16 3.6E-21 162.7 12.9 129 165-300 121-285 (518)
20 COG1201 Lhr Lhr-like helicases 99.7 1.1E-16 2.3E-21 169.8 11.3 138 173-317 8-181 (814)
21 PRK04537 ATP-dependent RNA hel 99.7 2E-16 4.3E-21 164.1 11.8 124 172-301 15-175 (572)
22 PTZ00110 helicase; Provisional 99.7 3.3E-16 7.2E-21 161.6 12.4 128 166-300 131-292 (545)
23 PF00270 DEAD: DEAD/DEAH box h 99.7 2.9E-16 6.2E-21 135.3 9.9 128 196-324 1-163 (169)
24 KOG0952|consensus 99.7 7.6E-17 1.7E-21 170.9 7.4 128 191-324 106-249 (1230)
25 PTZ00424 helicase 45; Provisio 99.7 7.6E-16 1.7E-20 151.5 13.1 123 172-300 34-185 (401)
26 PRK13767 ATP-dependent helicas 99.7 4.3E-16 9.3E-21 168.6 11.7 129 173-308 18-195 (876)
27 cd00268 DEADc DEAD-box helicas 99.6 3.8E-15 8.3E-20 133.0 12.3 131 194-324 21-185 (203)
28 KOG0338|consensus 99.6 5.4E-16 1.2E-20 154.8 7.3 124 170-299 185-341 (691)
29 PRK11634 ATP-dependent RNA hel 99.6 4E-15 8.6E-20 155.9 13.5 123 172-300 12-164 (629)
30 PRK05580 primosome assembly pr 99.6 4.3E-15 9.4E-20 156.9 12.7 139 192-330 142-311 (679)
31 KOG0331|consensus 99.6 4.1E-15 8.8E-20 150.8 9.5 125 171-301 96-255 (519)
32 TIGR00614 recQ_fam ATP-depende 99.6 1.1E-14 2.3E-19 147.6 12.2 114 190-306 6-148 (470)
33 KOG0330|consensus 99.6 1.9E-15 4.1E-20 147.0 6.1 115 163-284 59-187 (476)
34 KOG0345|consensus 99.6 1.9E-14 4.1E-19 142.7 11.7 124 172-301 12-173 (567)
35 COG0513 SrmB Superfamily II DN 99.6 2.1E-14 4.6E-19 147.2 11.9 123 172-300 35-189 (513)
36 KOG0348|consensus 99.5 1.7E-14 3.7E-19 144.8 10.4 126 170-301 140-303 (708)
37 COG1202 Superfamily II helicas 99.5 1.5E-14 3.1E-19 146.4 9.3 138 171-315 199-367 (830)
38 KOG0347|consensus 99.5 2.3E-15 5.1E-20 151.4 3.2 119 159-284 175-321 (731)
39 COG1205 Distinct helicase fami 99.5 1.8E-14 3.8E-19 155.2 10.0 108 194-301 70-211 (851)
40 KOG0343|consensus 99.5 1.6E-14 3.5E-19 145.4 6.3 123 173-301 76-231 (758)
41 TIGR01389 recQ ATP-dependent D 99.5 1.3E-13 2.9E-18 143.3 12.7 113 190-305 8-147 (591)
42 PRK11057 ATP-dependent DNA hel 99.5 1.9E-13 4.2E-18 142.7 13.1 114 191-307 21-161 (607)
43 PRK09401 reverse gyrase; Revie 99.5 2E-13 4.3E-18 151.3 12.5 115 189-303 75-219 (1176)
44 KOG0342|consensus 99.5 6.4E-14 1.4E-18 139.5 7.3 153 169-329 85-277 (543)
45 KOG0340|consensus 99.5 1.2E-13 2.7E-18 133.1 8.4 99 170-274 11-116 (442)
46 PHA02558 uvsW UvsW helicase; P 99.4 5.8E-13 1.3E-17 136.2 12.8 108 193-300 113-237 (501)
47 KOG0350|consensus 99.4 2E-13 4.3E-18 136.3 8.3 114 194-307 159-318 (620)
48 TIGR00595 priA primosomal prot 99.4 1.8E-13 3.9E-18 140.2 8.1 119 213-331 1-147 (505)
49 TIGR01054 rgy reverse gyrase. 99.4 4.7E-13 1E-17 148.4 11.0 113 191-303 75-217 (1171)
50 PLN03137 ATP-dependent DNA hel 99.4 7.2E-13 1.6E-17 144.2 11.6 114 190-306 455-602 (1195)
51 COG1200 RecG RecG-like helicas 99.4 3.5E-13 7.5E-18 139.4 8.3 135 189-324 257-422 (677)
52 TIGR03158 cas3_cyano CRISPR-as 99.4 1.3E-12 2.9E-17 128.2 11.2 70 198-270 1-80 (357)
53 COG1198 PriA Primosomal protei 99.4 8E-13 1.7E-17 139.5 9.8 139 194-332 198-368 (730)
54 PRK14701 reverse gyrase; Provi 99.4 1.2E-12 2.6E-17 148.4 11.9 114 189-302 74-217 (1638)
55 KOG0335|consensus 99.4 6.1E-13 1.3E-17 133.4 6.8 109 194-302 96-244 (482)
56 KOG0346|consensus 99.4 9.1E-13 2E-17 130.1 7.2 124 171-300 24-185 (569)
57 smart00487 DEXDc DEAD-like hel 99.4 4.6E-12 1E-16 109.3 10.9 130 193-323 7-170 (201)
58 KOG0333|consensus 99.3 3.8E-12 8.3E-17 127.9 9.2 130 163-300 243-411 (673)
59 KOG0334|consensus 99.3 3.4E-12 7.5E-17 136.3 8.5 129 163-298 363-528 (997)
60 COG1061 SSL2 DNA or RNA helica 99.3 2.6E-11 5.7E-16 122.4 11.8 108 191-301 33-162 (442)
61 PRK13766 Hef nuclease; Provisi 99.3 2.6E-11 5.6E-16 129.7 11.4 106 193-299 14-145 (773)
62 PRK09751 putative ATP-dependen 99.3 9.2E-12 2E-16 139.7 8.0 97 214-310 1-149 (1490)
63 TIGR01587 cas3_core CRISPR-ass 99.2 1.1E-11 2.3E-16 120.5 7.1 112 211-324 1-166 (358)
64 KOG0354|consensus 99.2 3E-11 6.4E-16 126.7 10.2 106 193-299 61-193 (746)
65 KOG0336|consensus 99.1 6.3E-11 1.4E-15 116.4 6.6 122 174-301 228-383 (629)
66 PF04851 ResIII: Type III rest 99.1 3.1E-10 6.8E-15 98.2 10.1 67 193-262 2-75 (184)
67 KOG0337|consensus 99.1 7.1E-11 1.5E-15 116.3 6.3 127 171-306 26-183 (529)
68 KOG0344|consensus 99.1 1.4E-10 3E-15 118.0 8.4 94 162-261 132-233 (593)
69 cd00046 DEXDc DEAD-like helica 99.1 3.9E-10 8.4E-15 91.6 9.3 95 210-304 1-122 (144)
70 COG1111 MPH1 ERCC4-like helica 99.1 2.4E-10 5.2E-15 114.9 9.1 103 194-297 15-143 (542)
71 KOG0953|consensus 99.1 7.6E-11 1.6E-15 119.4 4.9 121 208-332 190-338 (700)
72 KOG0339|consensus 99.1 1.5E-10 3.3E-15 116.2 6.8 107 194-301 245-386 (731)
73 PRK12899 secA preprotein trans 99.1 3.1E-10 6.7E-15 121.8 8.6 94 191-284 89-191 (970)
74 TIGR02621 cas3_GSU0051 CRISPR- 99.1 1.8E-10 4E-15 123.3 6.8 134 192-328 13-220 (844)
75 PHA02653 RNA helicase NPH-II; 99.1 8.9E-10 1.9E-14 116.4 11.4 128 197-324 167-332 (675)
76 TIGR00603 rad25 DNA repair hel 99.0 1.6E-09 3.6E-14 114.8 12.4 106 192-300 253-390 (732)
77 PRK09200 preprotein translocas 99.0 1.5E-09 3.3E-14 115.9 10.9 92 191-284 75-176 (790)
78 KOG0951|consensus 99.0 1.1E-09 2.5E-14 118.7 8.8 112 194-306 309-457 (1674)
79 PRK11664 ATP-dependent RNA hel 99.0 3.3E-09 7.1E-14 114.4 12.0 129 198-326 9-162 (812)
80 TIGR01970 DEAH_box_HrpB ATP-de 99.0 4.1E-09 8.8E-14 113.7 12.7 130 198-327 6-160 (819)
81 KOG0341|consensus 99.0 5E-11 1.1E-15 116.5 -2.0 99 173-277 177-296 (610)
82 TIGR00963 secA preprotein tran 99.0 2.2E-09 4.8E-14 113.6 10.1 107 191-299 53-190 (745)
83 PRK09694 helicase Cas3; Provis 98.9 3.9E-09 8.4E-14 114.3 11.3 80 192-271 284-371 (878)
84 KOG0326|consensus 98.9 3E-10 6.4E-15 108.9 2.1 108 194-301 107-243 (459)
85 PRK12898 secA preprotein trans 98.9 3.8E-09 8.3E-14 110.8 10.0 92 191-284 100-200 (656)
86 KOG4284|consensus 98.9 9.4E-10 2E-14 113.1 4.2 128 163-300 26-182 (980)
87 TIGR03714 secA2 accessory Sec 98.9 7.8E-09 1.7E-13 109.9 9.9 102 194-297 70-207 (762)
88 PRK14873 primosome assembly pr 98.9 4.8E-09 1E-13 110.8 7.9 115 217-331 168-311 (665)
89 COG0514 RecQ Superfamily II DN 98.8 5E-09 1.1E-13 108.5 7.6 114 191-307 13-153 (590)
90 KOG0328|consensus 98.8 7.8E-09 1.7E-13 97.9 5.4 108 191-298 45-182 (400)
91 PRK11448 hsdR type I restricti 98.8 3.6E-08 7.7E-13 109.5 11.3 105 193-297 412-552 (1123)
92 KOG0949|consensus 98.8 1.5E-08 3.2E-13 108.2 7.7 117 192-308 509-655 (1330)
93 smart00488 DEXDc2 DEAD-like he 98.7 3.4E-08 7.4E-13 94.6 9.2 71 190-260 4-84 (289)
94 smart00489 DEXDc3 DEAD-like he 98.7 3.4E-08 7.4E-13 94.6 9.2 71 190-260 4-84 (289)
95 COG4098 comFA Superfamily II D 98.7 8.6E-08 1.9E-12 93.0 10.2 131 194-324 97-244 (441)
96 COG1110 Reverse gyrase [DNA re 98.7 7E-08 1.5E-12 103.7 9.9 112 187-298 75-216 (1187)
97 PRK13104 secA preprotein trans 98.7 6.9E-08 1.5E-12 103.9 9.2 93 190-284 78-179 (896)
98 KOG0352|consensus 98.7 6.9E-08 1.5E-12 95.8 8.2 110 195-307 21-163 (641)
99 TIGR01407 dinG_rel DnaQ family 98.6 1.4E-07 3E-12 102.5 10.6 65 191-255 242-310 (850)
100 KOG0951|consensus 98.6 4.4E-08 9.6E-13 106.7 6.3 107 194-301 1143-1269(1674)
101 KOG0332|consensus 98.6 1.7E-07 3.6E-12 91.7 9.4 103 194-296 112-243 (477)
102 KOG0327|consensus 98.6 5.7E-08 1.2E-12 95.0 4.6 83 191-273 44-134 (397)
103 KOG0950|consensus 98.5 1.4E-07 3E-12 100.9 6.7 115 194-308 223-364 (1008)
104 TIGR00348 hsdR type I site-spe 98.4 8.1E-07 1.8E-11 94.3 9.1 68 194-261 238-317 (667)
105 KOG0329|consensus 98.4 1.9E-07 4.1E-12 87.6 3.8 104 194-298 64-198 (387)
106 PRK07246 bifunctional ATP-depe 98.4 1.4E-06 3E-11 94.4 11.0 62 192-254 243-308 (820)
107 KOG0351|consensus 98.4 2.7E-07 5.9E-12 100.4 5.0 113 191-306 260-406 (941)
108 TIGR03117 cas_csf4 CRISPR-asso 98.4 9.4E-07 2E-11 93.0 8.7 55 206-260 13-69 (636)
109 PRK12904 preprotein translocas 98.4 7.6E-07 1.6E-11 95.7 7.6 92 191-284 78-178 (830)
110 COG1203 CRISPR-associated heli 98.3 1.3E-06 2.8E-11 93.7 8.6 70 194-263 195-272 (733)
111 COG4096 HsdR Type I site-speci 98.3 1.9E-06 4.2E-11 91.4 9.6 102 194-296 165-296 (875)
112 PF07652 Flavi_DEAD: Flaviviru 98.3 2.7E-07 5.9E-12 79.9 1.5 114 208-323 3-136 (148)
113 PRK08074 bifunctional ATP-depe 98.2 6.8E-06 1.5E-10 90.3 10.8 71 192-262 255-334 (928)
114 PRK04914 ATP-dependent helicas 98.2 1E-05 2.2E-10 88.8 11.5 131 193-324 151-316 (956)
115 PF00176 SNF2_N: SNF2 family N 98.2 6.2E-06 1.3E-10 77.1 8.5 90 208-298 24-147 (299)
116 PRK11131 ATP-dependent RNA hel 98.1 2.2E-05 4.7E-10 88.1 11.0 130 196-328 76-233 (1294)
117 TIGR00604 rad3 DNA repair heli 98.1 1.1E-05 2.4E-10 86.1 8.4 70 190-259 5-82 (705)
118 KOG0353|consensus 98.1 1.5E-05 3.3E-10 78.5 8.6 111 194-307 94-237 (695)
119 PF13086 AAA_11: AAA domain; P 98.0 1.6E-05 3.4E-10 71.2 8.1 66 194-259 1-75 (236)
120 COG1199 DinG Rad3-related DNA 98.0 1.4E-05 3.1E-10 84.2 8.7 68 192-259 13-85 (654)
121 PRK13107 preprotein translocas 98.0 1.7E-05 3.8E-10 85.6 9.3 93 190-284 78-179 (908)
122 PRK13103 secA preprotein trans 98.0 1.9E-05 4E-10 85.5 9.2 105 192-298 80-215 (913)
123 PRK11747 dinG ATP-dependent DN 98.0 1.7E-05 3.7E-10 84.7 8.6 63 192-254 23-95 (697)
124 KOG0952|consensus 98.0 1.9E-06 4E-11 93.1 0.7 108 194-307 927-1041(1230)
125 PRK12906 secA preprotein trans 97.9 2.5E-05 5.4E-10 83.9 8.5 83 190-274 76-162 (796)
126 PF13245 AAA_19: Part of AAA d 97.9 3.4E-05 7.4E-10 59.6 7.0 49 209-257 10-62 (76)
127 PRK12326 preprotein translocas 97.8 8.3E-05 1.8E-09 79.0 9.3 82 190-273 74-159 (764)
128 PF00580 UvrD-helicase: UvrD/R 97.7 0.00011 2.4E-09 68.9 7.5 65 195-261 1-69 (315)
129 TIGR01967 DEAH_box_HrpA ATP-de 97.6 0.00029 6.3E-09 79.4 9.9 97 198-296 71-190 (1283)
130 PLN03142 Probable chromatin-re 97.6 0.00026 5.6E-09 78.4 9.3 106 194-300 169-306 (1033)
131 COG0556 UvrB Helicase subunit 97.5 0.00017 3.7E-09 73.9 6.7 69 192-263 10-83 (663)
132 COG4889 Predicted helicase [Ge 97.4 0.00073 1.6E-08 72.7 9.9 67 192-260 159-229 (1518)
133 TIGR00376 DNA helicase, putati 97.4 0.00072 1.6E-08 71.7 9.1 67 194-260 157-224 (637)
134 PF13604 AAA_30: AAA domain; P 97.3 0.0013 2.8E-08 59.5 8.4 63 195-257 2-66 (196)
135 TIGR01448 recD_rel helicase, p 97.1 0.00097 2.1E-08 71.7 7.5 64 191-254 320-385 (720)
136 COG1643 HrpA HrpA-like helicas 97.1 0.0031 6.8E-08 68.6 10.7 134 196-329 52-211 (845)
137 KOG1123|consensus 97.1 0.00061 1.3E-08 69.5 4.9 102 194-299 302-436 (776)
138 PF09848 DUF2075: Uncharacteri 97.1 0.001 2.2E-08 65.3 6.2 90 211-300 3-98 (352)
139 KOG1803|consensus 97.0 0.0015 3.3E-08 67.8 7.2 68 191-258 182-250 (649)
140 PF07517 SecA_DEAD: SecA DEAD- 96.8 0.0049 1.1E-07 58.7 8.6 82 190-273 73-158 (266)
141 PF05970 PIF1: PIF1-like helic 96.7 0.0048 1E-07 61.0 7.7 105 195-300 2-117 (364)
142 TIGR00631 uvrb excinuclease AB 96.6 0.0081 1.8E-07 64.0 9.1 69 192-263 7-80 (655)
143 PF02562 PhoH: PhoH-like prote 96.6 0.0044 9.6E-08 56.8 5.8 54 195-248 5-60 (205)
144 KOG0920|consensus 96.5 0.017 3.7E-07 63.2 10.6 135 196-330 175-336 (924)
145 CHL00122 secA preprotein trans 96.4 0.0055 1.2E-07 66.5 6.5 81 191-273 73-157 (870)
146 PRK11054 helD DNA helicase IV; 96.4 0.013 2.9E-07 62.7 9.0 68 193-262 195-266 (684)
147 PRK12902 secA preprotein trans 96.4 0.016 3.5E-07 63.2 9.5 81 191-273 82-166 (939)
148 KOG0387|consensus 96.3 0.019 4.1E-07 61.5 9.6 129 194-323 205-375 (923)
149 PRK10875 recD exonuclease V su 96.3 0.0078 1.7E-07 63.7 6.5 65 195-259 153-221 (615)
150 cd00009 AAA The AAA+ (ATPases 96.3 0.017 3.7E-07 46.8 7.1 38 209-246 19-56 (151)
151 TIGR01447 recD exodeoxyribonuc 96.2 0.026 5.6E-07 59.5 9.6 64 196-259 147-215 (586)
152 PRK06526 transposase; Provisio 96.2 0.011 2.3E-07 55.9 6.2 47 207-254 96-142 (254)
153 PRK10919 ATP-dependent DNA hel 96.2 0.013 2.7E-07 62.7 7.3 67 194-262 2-72 (672)
154 KOG1802|consensus 96.2 0.015 3.3E-07 61.3 7.6 67 194-260 410-477 (935)
155 PRK15483 type III restriction- 96.1 0.024 5.1E-07 62.6 9.3 48 210-257 60-109 (986)
156 PRK05298 excinuclease ABC subu 96.1 0.023 4.9E-07 60.6 8.7 70 191-263 9-83 (652)
157 PHA02533 17 large terminase pr 96.0 0.05 1.1E-06 56.7 10.5 72 190-261 55-128 (534)
158 TIGR02785 addA_Gpos recombinat 95.8 0.03 6.5E-07 63.8 8.5 66 195-262 2-70 (1232)
159 PRK11773 uvrD DNA-dependent he 95.7 0.029 6.2E-07 60.4 7.8 67 194-262 9-79 (721)
160 KOG0926|consensus 95.6 0.048 1E-06 58.7 8.5 132 201-332 263-433 (1172)
161 TIGR01074 rep ATP-dependent DN 95.6 0.036 7.8E-07 58.8 7.7 66 195-262 2-71 (664)
162 TIGR01075 uvrD DNA helicase II 95.5 0.032 6.9E-07 60.0 7.1 67 194-262 4-74 (715)
163 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.029 6.3E-07 51.9 6.0 51 208-259 20-70 (237)
164 cd01124 KaiC KaiC is a circadi 95.5 0.031 6.8E-07 48.8 5.9 48 211-259 1-48 (187)
165 cd01120 RecA-like_NTPases RecA 95.5 0.038 8.1E-07 46.2 6.1 39 212-250 2-40 (165)
166 PRK13894 conjugal transfer ATP 95.4 0.035 7.7E-07 54.2 6.6 54 195-249 133-190 (319)
167 smart00382 AAA ATPases associa 95.4 0.023 4.9E-07 45.4 4.5 41 209-249 2-42 (148)
168 PRK13833 conjugal transfer pro 95.4 0.041 8.8E-07 53.9 7.0 54 195-249 129-186 (323)
169 TIGR02768 TraA_Ti Ti-type conj 95.4 0.065 1.4E-06 58.0 8.9 63 192-254 350-413 (744)
170 PRK10536 hypothetical protein; 95.4 0.047 1E-06 51.9 6.9 55 194-248 59-115 (262)
171 KOG0349|consensus 95.3 0.0033 7.1E-08 63.3 -1.2 39 194-232 24-62 (725)
172 PRK08727 hypothetical protein; 95.2 0.075 1.6E-06 49.2 7.9 45 210-255 42-86 (233)
173 PRK08181 transposase; Validate 95.2 0.079 1.7E-06 50.5 8.1 59 195-254 88-150 (269)
174 KOG0922|consensus 95.2 0.08 1.7E-06 55.8 8.7 127 196-329 53-211 (674)
175 PF01695 IstB_IS21: IstB-like 95.2 0.039 8.4E-07 49.2 5.7 47 207-254 45-91 (178)
176 TIGR02782 TrbB_P P-type conjug 95.1 0.07 1.5E-06 51.5 7.6 54 195-249 117-174 (299)
177 PF06745 KaiC: KaiC; InterPro 95.1 0.037 8.1E-07 50.4 5.2 51 208-259 18-69 (226)
178 TIGR01073 pcrA ATP-dependent D 95.0 0.065 1.4E-06 57.7 7.7 67 194-262 4-74 (726)
179 PF12340 DUF3638: Protein of u 94.9 0.09 1.9E-06 49.1 7.2 71 193-263 22-95 (229)
180 COG0467 RAD55 RecA-superfamily 94.9 0.063 1.4E-06 50.2 6.2 53 208-262 22-74 (260)
181 PRK13851 type IV secretion sys 94.7 0.059 1.3E-06 53.2 6.0 44 206-250 159-202 (344)
182 cd01130 VirB11-like_ATPase Typ 94.6 0.099 2.1E-06 46.5 6.6 48 195-243 10-58 (186)
183 KOG0390|consensus 94.6 0.16 3.5E-06 54.9 9.3 128 194-323 238-414 (776)
184 PRK09183 transposase/IS protei 94.6 0.18 3.9E-06 47.7 8.6 47 206-253 99-145 (259)
185 PF02399 Herpes_ori_bp: Origin 94.4 0.2 4.3E-06 54.4 9.4 51 210-260 50-101 (824)
186 PRK04328 hypothetical protein; 94.4 0.089 1.9E-06 49.2 6.2 51 208-259 22-72 (249)
187 PRK12903 secA preprotein trans 94.4 0.12 2.5E-06 56.6 7.7 81 191-273 75-159 (925)
188 KOG1000|consensus 94.4 0.4 8.7E-06 49.5 11.0 135 194-330 198-359 (689)
189 PF12846 AAA_10: AAA-like doma 94.3 0.073 1.6E-06 49.4 5.4 43 209-251 1-43 (304)
190 COG0610 Type I site-specific r 94.3 0.14 3.1E-06 56.9 8.4 53 210-263 274-328 (962)
191 PRK05973 replicative DNA helic 94.2 0.11 2.4E-06 48.7 6.3 53 206-259 61-113 (237)
192 KOG1132|consensus 94.2 0.11 2.3E-06 56.5 6.8 71 189-259 16-132 (945)
193 COG1484 DnaC DNA replication p 94.1 0.15 3.2E-06 48.2 6.9 51 207-258 103-153 (254)
194 TIGR03499 FlhF flagellar biosy 94.0 0.14 3.1E-06 48.9 6.7 54 208-261 193-250 (282)
195 KOG1133|consensus 94.0 0.074 1.6E-06 56.4 5.1 41 191-231 12-56 (821)
196 KOG4439|consensus 94.0 0.14 3.1E-06 54.5 7.0 107 193-300 324-478 (901)
197 cd01129 PulE-GspE PulE/GspE Th 93.9 0.16 3.4E-06 48.2 6.7 50 194-243 63-114 (264)
198 TIGR03015 pepcterm_ATPase puta 93.9 0.23 4.9E-06 46.0 7.7 68 194-261 23-95 (269)
199 PRK08533 flagellar accessory p 93.9 0.14 3.1E-06 47.4 6.2 50 208-258 23-72 (230)
200 TIGR02237 recomb_radB DNA repa 93.7 0.15 3.2E-06 45.8 5.8 39 208-246 11-49 (209)
201 PRK13889 conjugal transfer rel 93.6 0.27 5.8E-06 54.9 8.8 62 192-253 344-406 (988)
202 PF00448 SRP54: SRP54-type pro 93.6 0.18 4E-06 45.6 6.3 51 211-262 3-56 (196)
203 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.16 3.4E-06 47.9 6.0 36 209-244 36-71 (259)
204 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.18 3.8E-06 46.0 6.2 48 208-256 19-66 (229)
205 PRK13900 type IV secretion sys 93.5 0.17 3.7E-06 49.7 6.4 43 206-249 157-199 (332)
206 TIGR03880 KaiC_arch_3 KaiC dom 93.5 0.2 4.3E-06 45.6 6.4 50 209-259 16-65 (224)
207 PRK06835 DNA replication prote 93.4 0.2 4.4E-06 49.1 6.7 46 208-254 182-227 (329)
208 PF00437 T2SE: Type II/IV secr 93.3 0.16 3.6E-06 47.5 5.8 41 207-248 125-166 (270)
209 COG4626 Phage terminase-like p 93.3 0.51 1.1E-05 49.1 9.6 112 189-300 56-199 (546)
210 TIGR02012 tigrfam_recA protein 93.3 0.18 3.9E-06 49.4 6.0 44 209-252 55-98 (321)
211 PF13481 AAA_25: AAA domain; P 93.3 0.25 5.4E-06 43.4 6.5 54 208-262 31-94 (193)
212 PRK07952 DNA replication prote 93.2 0.38 8.3E-06 45.2 8.0 44 210-254 100-143 (244)
213 TIGR02562 cas3_yersinia CRISPR 93.2 0.2 4.3E-06 55.8 6.8 74 196-270 410-498 (1110)
214 KOG4150|consensus 93.2 0.011 2.3E-07 61.5 -2.7 64 194-257 286-351 (1034)
215 TIGR00064 ftsY signal recognit 93.1 0.28 6.1E-06 46.8 7.0 60 209-269 72-133 (272)
216 KOG0389|consensus 93.1 0.25 5.3E-06 53.3 7.1 114 193-307 398-547 (941)
217 PRK04296 thymidine kinase; Pro 93.1 0.14 3E-06 45.9 4.7 37 209-245 2-38 (190)
218 KOG0924|consensus 93.0 0.62 1.3E-05 49.8 9.7 67 196-262 358-425 (1042)
219 cd00983 recA RecA is a bacter 92.9 0.21 4.4E-06 49.1 5.9 45 209-253 55-99 (325)
220 PRK10436 hypothetical protein; 92.9 0.26 5.7E-06 50.5 7.0 40 194-234 201-242 (462)
221 cd00984 DnaB_C DnaB helicase C 92.9 0.15 3.2E-06 46.7 4.6 45 208-252 12-60 (242)
222 PF02534 T4SS-DNA_transf: Type 92.7 0.12 2.6E-06 52.3 4.1 56 210-267 45-100 (469)
223 COG4962 CpaF Flp pilus assembl 92.6 0.28 6.1E-06 48.4 6.4 55 194-249 157-212 (355)
224 PRK09354 recA recombinase A; P 92.6 0.24 5.1E-06 49.1 5.9 44 209-252 60-103 (349)
225 PRK08116 hypothetical protein; 92.6 0.7 1.5E-05 43.9 8.9 47 210-257 115-161 (268)
226 TIGR02538 type_IV_pilB type IV 92.6 0.29 6.2E-06 51.4 6.8 40 194-234 299-340 (564)
227 PF13401 AAA_22: AAA domain; P 92.5 0.21 4.6E-06 40.7 4.7 24 208-231 3-26 (131)
228 COG2804 PulE Type II secretory 92.5 0.3 6.6E-06 50.3 6.6 101 194-298 241-363 (500)
229 cd01394 radB RadB. The archaea 92.4 0.21 4.6E-06 45.1 4.9 37 208-244 18-54 (218)
230 PRK06067 flagellar accessory p 92.4 0.23 4.9E-06 45.6 5.2 50 209-259 25-74 (234)
231 PRK12377 putative replication 92.4 0.37 7.9E-06 45.5 6.6 48 209-257 101-148 (248)
232 PRK05703 flhF flagellar biosyn 92.1 0.47 1E-05 48.1 7.5 53 209-261 221-277 (424)
233 TIGR02640 gas_vesic_GvpN gas v 92.1 0.25 5.5E-06 46.5 5.2 35 195-229 3-41 (262)
234 TIGR03420 DnaA_homol_Hda DnaA 92.0 0.26 5.6E-06 44.5 5.0 42 208-250 37-78 (226)
235 TIGR02533 type_II_gspE general 92.0 0.31 6.8E-06 50.3 6.2 34 194-227 225-260 (486)
236 PRK06921 hypothetical protein; 91.9 0.41 8.9E-06 45.4 6.4 47 208-255 116-163 (266)
237 KOG1131|consensus 91.8 0.63 1.4E-05 48.4 7.9 69 191-259 12-89 (755)
238 KOG0923|consensus 91.8 0.36 7.8E-06 51.3 6.3 65 196-262 267-335 (902)
239 cd01126 TraG_VirD4 The TraG/Tr 91.8 0.12 2.6E-06 51.2 2.8 54 211-267 1-55 (384)
240 PRK09361 radB DNA repair and r 91.8 0.28 6E-06 44.6 5.0 39 208-246 22-60 (225)
241 TIGR03819 heli_sec_ATPase heli 91.8 0.37 8.1E-06 47.4 6.2 54 195-249 163-217 (340)
242 TIGR03743 SXT_TraD conjugative 91.7 0.62 1.3E-05 49.7 8.1 52 209-260 176-229 (634)
243 COG1444 Predicted P-loop ATPas 91.7 0.82 1.8E-05 49.5 9.0 68 194-261 211-285 (758)
244 cd03115 SRP The signal recogni 91.7 0.45 9.9E-06 41.3 6.0 46 212-257 3-50 (173)
245 PRK08084 DNA replication initi 91.7 0.53 1.2E-05 43.6 6.8 38 208-245 44-81 (235)
246 COG3973 Superfamily I DNA and 91.7 0.48 1E-05 50.0 7.0 54 207-260 224-283 (747)
247 COG2805 PilT Tfp pilus assembl 91.6 0.21 4.6E-06 48.7 4.1 18 210-227 126-143 (353)
248 cd01122 GP4d_helicase GP4d_hel 91.6 0.27 6E-06 45.8 4.8 39 207-245 28-67 (271)
249 TIGR02788 VirB11 P-type DNA tr 91.6 0.33 7.2E-06 46.9 5.5 39 206-245 141-179 (308)
250 KOG1002|consensus 91.6 1.3 2.9E-05 45.8 9.9 77 193-271 183-267 (791)
251 TIGR02655 circ_KaiC circadian 91.5 0.37 8E-06 49.6 6.1 52 207-259 261-312 (484)
252 PRK12723 flagellar biosynthesi 91.5 0.51 1.1E-05 47.4 6.9 88 209-298 174-267 (388)
253 PF01935 DUF87: Domain of unkn 91.5 0.31 6.7E-06 44.4 4.9 40 209-248 23-63 (229)
254 PRK12724 flagellar biosynthesi 91.4 0.56 1.2E-05 47.7 7.1 52 209-260 223-277 (432)
255 TIGR02655 circ_KaiC circadian 91.4 0.38 8.2E-06 49.5 6.0 51 208-259 20-71 (484)
256 PRK13826 Dtr system oriT relax 91.3 0.83 1.8E-05 51.6 8.9 63 192-254 379-442 (1102)
257 PRK10416 signal recognition pa 91.3 0.58 1.2E-05 45.7 6.9 60 209-269 114-175 (318)
258 PRK10867 signal recognition pa 91.3 0.49 1.1E-05 48.2 6.5 51 210-260 101-154 (433)
259 PRK00771 signal recognition pa 91.3 0.57 1.2E-05 47.8 7.0 53 209-261 95-149 (437)
260 cd00544 CobU Adenosylcobinamid 91.1 0.4 8.6E-06 42.5 5.1 43 212-257 2-44 (169)
261 PF10412 TrwB_AAD_bind: Type I 91.1 0.35 7.5E-06 48.3 5.2 45 208-252 14-58 (386)
262 PRK12726 flagellar biosynthesi 91.1 0.5 1.1E-05 47.6 6.3 54 208-261 205-260 (407)
263 PRK11889 flhF flagellar biosyn 91.0 0.65 1.4E-05 47.1 7.0 53 209-261 241-295 (436)
264 PRK08903 DnaA regulatory inact 91.0 0.81 1.8E-05 41.6 7.2 38 208-245 41-78 (227)
265 cd01127 TrwB Bacterial conjuga 90.8 0.3 6.4E-06 49.1 4.5 44 209-252 42-85 (410)
266 KOG0385|consensus 90.7 1 2.2E-05 48.8 8.3 107 193-300 166-304 (971)
267 COG1219 ClpX ATP-dependent pro 90.6 0.16 3.4E-06 50.0 2.1 22 207-228 95-116 (408)
268 PRK05642 DNA replication initi 90.5 0.42 9.1E-06 44.3 4.8 42 210-252 46-87 (234)
269 TIGR00959 ffh signal recogniti 90.4 0.75 1.6E-05 46.8 6.9 52 210-261 100-154 (428)
270 PRK14722 flhF flagellar biosyn 90.3 0.6 1.3E-05 46.7 6.0 56 207-262 135-194 (374)
271 PRK08939 primosomal protein Dn 90.2 0.75 1.6E-05 44.6 6.5 46 208-254 155-200 (306)
272 KOG0925|consensus 90.2 0.72 1.6E-05 47.6 6.5 66 196-261 49-115 (699)
273 cd01131 PilT Pilus retraction 90.2 0.44 9.6E-06 42.9 4.6 18 211-228 3-20 (198)
274 PRK06893 DNA replication initi 90.0 0.47 1E-05 43.7 4.7 36 210-245 40-75 (229)
275 COG1221 PspF Transcriptional r 89.9 0.7 1.5E-05 46.7 6.2 89 207-300 99-188 (403)
276 cd01393 recA_like RecA is a b 89.9 0.64 1.4E-05 42.0 5.5 40 208-247 18-63 (226)
277 TIGR01425 SRP54_euk signal rec 89.9 0.76 1.6E-05 46.8 6.5 51 210-260 101-153 (429)
278 TIGR02974 phageshock_pspF psp 89.8 1.1 2.4E-05 43.7 7.4 97 198-300 11-108 (329)
279 PRK09302 circadian clock prote 89.3 0.84 1.8E-05 47.1 6.5 53 208-262 272-324 (509)
280 COG0210 UvrD Superfamily I DNA 89.3 0.93 2E-05 48.0 7.0 67 194-262 2-72 (655)
281 PRK12900 secA preprotein trans 89.3 0.77 1.7E-05 51.0 6.4 80 191-272 135-218 (1025)
282 COG0630 VirB11 Type IV secreto 89.2 0.97 2.1E-05 44.0 6.4 33 195-227 128-161 (312)
283 PRK12901 secA preprotein trans 89.1 0.84 1.8E-05 51.0 6.5 77 191-269 166-246 (1112)
284 PRK14974 cell division protein 89.1 1.2 2.6E-05 43.9 7.0 53 210-262 141-195 (336)
285 TIGR03754 conj_TOL_TraD conjug 89.1 1.1 2.3E-05 48.0 7.0 51 209-259 180-232 (643)
286 PF13872 AAA_34: P-loop contai 88.9 3.1 6.8E-05 40.5 9.6 69 194-262 37-116 (303)
287 COG0593 DnaA ATPase involved i 88.8 1.1 2.4E-05 45.3 6.7 55 209-264 113-176 (408)
288 TIGR02746 TraC-F-type type-IV 88.7 0.61 1.3E-05 50.5 5.2 41 208-248 429-469 (797)
289 TIGR02759 TraD_Ftype type IV c 88.4 0.67 1.5E-05 48.8 5.0 41 209-249 176-216 (566)
290 TIGR02760 TraI_TIGR conjugativ 88.3 1.8 3.9E-05 51.9 9.0 65 192-256 427-493 (1960)
291 TIGR01420 pilT_fam pilus retra 88.3 0.7 1.5E-05 45.3 4.9 41 207-248 120-162 (343)
292 PRK13764 ATPase; Provisional 88.2 0.72 1.6E-05 48.9 5.2 22 207-228 255-276 (602)
293 PRK09302 circadian clock prote 88.2 0.64 1.4E-05 47.9 4.7 51 208-259 30-81 (509)
294 TIGR02784 addA_alphas double-s 88.1 0.83 1.8E-05 51.8 5.9 55 208-262 9-66 (1141)
295 PF02374 ArsA_ATPase: Anion-tr 88.0 0.93 2E-05 43.9 5.5 42 210-251 2-45 (305)
296 PF03354 Terminase_1: Phage Te 88.0 2.8 6.1E-05 43.0 9.2 66 197-262 1-79 (477)
297 PF05496 RuvB_N: Holliday junc 87.8 1.4 3E-05 41.4 6.1 20 210-229 51-70 (233)
298 PF13238 AAA_18: AAA domain; P 87.8 0.39 8.5E-06 38.7 2.3 19 212-230 1-19 (129)
299 PF13207 AAA_17: AAA domain; P 87.7 0.52 1.1E-05 38.1 3.0 20 212-231 2-21 (121)
300 PRK05800 cobU adenosylcobinami 87.7 0.99 2.1E-05 39.9 5.0 45 210-257 2-46 (170)
301 TIGR03346 chaperone_ClpB ATP-d 87.7 1.6 3.5E-05 48.1 7.7 23 208-230 193-215 (852)
302 cd01123 Rad51_DMC1_radA Rad51_ 87.6 1 2.2E-05 40.9 5.2 38 208-245 18-61 (235)
303 PRK13897 type IV secretion sys 87.6 0.68 1.5E-05 49.2 4.5 57 209-268 158-215 (606)
304 PF12775 AAA_7: P-loop contain 87.4 0.51 1.1E-05 44.9 3.2 25 206-230 30-54 (272)
305 PRK00149 dnaA chromosomal repl 87.4 1.5 3.2E-05 44.6 6.7 47 210-257 149-197 (450)
306 PRK11823 DNA repair protein Ra 87.4 1.2 2.7E-05 45.4 6.1 87 208-298 79-169 (446)
307 TIGR02760 TraI_TIGR conjugativ 87.2 2.1 4.5E-05 51.4 8.6 63 192-254 1017-1085(1960)
308 PF07728 AAA_5: AAA domain (dy 87.1 1.1 2.5E-05 37.2 4.8 20 211-230 1-20 (139)
309 PRK12422 chromosomal replicati 87.1 1.3 2.9E-05 45.1 6.2 45 210-255 142-186 (445)
310 TIGR00362 DnaA chromosomal rep 87.0 1.5 3.3E-05 43.7 6.5 46 210-256 137-184 (405)
311 PRK04195 replication factor C 86.8 2.5 5.5E-05 43.3 8.1 33 209-244 39-71 (482)
312 PRK06995 flhF flagellar biosyn 86.6 1.9 4.2E-05 44.6 7.0 55 208-262 255-313 (484)
313 PRK10865 protein disaggregatio 86.5 1.4 3.1E-05 48.6 6.4 24 208-231 198-221 (857)
314 COG1074 RecB ATP-dependent exo 86.4 1.2 2.6E-05 50.6 5.9 56 208-263 15-75 (1139)
315 PF05673 DUF815: Protein of un 86.2 7 0.00015 37.0 10.0 129 196-328 32-199 (249)
316 TIGR01817 nifA Nif-specific re 86.2 3.3 7.1E-05 43.0 8.6 88 206-299 216-304 (534)
317 TIGR03744 traC_PFL_4706 conjug 86.1 0.97 2.1E-05 50.1 4.9 40 209-248 475-515 (893)
318 PF07724 AAA_2: AAA domain (Cd 86.0 1.5 3.2E-05 38.9 5.2 41 210-251 4-45 (171)
319 KOG2028|consensus 86.0 0.83 1.8E-05 45.8 3.8 54 206-259 157-212 (554)
320 PF01580 FtsK_SpoIIIE: FtsK/Sp 86.0 1.1 2.5E-05 40.0 4.5 23 209-231 38-60 (205)
321 PRK11608 pspF phage shock prot 85.9 2.8 6E-05 40.9 7.5 96 197-298 17-113 (326)
322 TIGR02524 dot_icm_DotB Dot/Icm 85.7 1.2 2.7E-05 44.1 5.0 21 207-227 132-152 (358)
323 PRK05541 adenylylsulfate kinas 85.6 1.5 3.3E-05 38.2 5.0 36 208-243 6-41 (176)
324 PF13555 AAA_29: P-loop contai 85.5 0.77 1.7E-05 34.2 2.6 20 209-228 23-42 (62)
325 PRK13880 conjugal transfer cou 85.4 0.81 1.8E-05 48.8 3.8 57 209-267 175-232 (636)
326 PF13671 AAA_33: AAA domain; P 85.3 0.62 1.4E-05 38.6 2.3 18 212-229 2-19 (143)
327 COG2256 MGS1 ATPase related to 85.3 1.2 2.6E-05 44.9 4.7 45 210-257 49-93 (436)
328 TIGR00416 sms DNA repair prote 85.3 1.8 4E-05 44.3 6.1 51 208-259 93-143 (454)
329 TIGR00176 mobB molybdopterin-g 85.3 1.5 3.3E-05 38.1 4.9 35 212-246 2-36 (155)
330 TIGR03783 Bac_Flav_CT_G Bacter 85.3 0.57 1.2E-05 51.5 2.6 38 208-245 437-474 (829)
331 COG1419 FlhF Flagellar GTP-bin 85.2 2.5 5.5E-05 42.7 6.9 55 208-262 202-260 (407)
332 COG3451 VirB4 Type IV secretor 85.2 1 2.2E-05 49.3 4.5 39 210-248 437-476 (796)
333 cd01983 Fer4_NifH The Fer4_Nif 85.2 1.9 4.1E-05 32.4 4.9 33 212-244 2-34 (99)
334 PRK12727 flagellar biosynthesi 85.2 1.7 3.7E-05 45.5 5.9 53 207-259 348-404 (559)
335 PF01078 Mg_chelatase: Magnesi 85.1 0.95 2.1E-05 41.7 3.6 30 199-228 11-41 (206)
336 PF05729 NACHT: NACHT domain 85.0 1.6 3.6E-05 36.5 4.8 22 210-231 1-22 (166)
337 COG0552 FtsY Signal recognitio 85.0 1.8 4E-05 42.6 5.7 87 211-299 141-235 (340)
338 PRK13700 conjugal transfer pro 84.9 1.2 2.5E-05 48.2 4.6 44 209-252 185-228 (732)
339 cd02028 UMPK_like Uridine mono 84.8 1.5 3.3E-05 38.9 4.7 19 212-230 2-20 (179)
340 PLN02165 adenylate isopentenyl 84.8 0.4 8.7E-06 47.2 1.0 22 207-228 41-62 (334)
341 PF03205 MobB: Molybdopterin g 84.7 1.6 3.5E-05 37.3 4.6 36 211-246 2-37 (140)
342 PF00004 AAA: ATPase family as 84.5 0.97 2.1E-05 36.5 3.1 32 212-246 1-32 (132)
343 TIGR02525 plasmid_TraJ plasmid 84.4 1.6 3.5E-05 43.6 5.2 20 208-227 148-167 (372)
344 PRK13876 conjugal transfer cou 84.3 1.4 2.9E-05 47.4 4.8 56 209-267 144-199 (663)
345 PRK14729 miaA tRNA delta(2)-is 84.2 0.76 1.6E-05 44.6 2.7 22 209-230 4-25 (300)
346 TIGR01547 phage_term_2 phage t 84.2 1.9 4.1E-05 42.8 5.6 52 210-261 2-57 (396)
347 PRK14712 conjugal transfer nic 84.2 3.7 8.1E-05 48.2 8.5 62 193-254 834-901 (1623)
348 TIGR02236 recomb_radA DNA repa 84.0 2.1 4.6E-05 41.0 5.7 36 209-244 95-136 (310)
349 PF03796 DnaB_C: DnaB-like hel 84.0 1.8 3.9E-05 40.3 5.0 38 208-245 18-56 (259)
350 PRK13850 type IV secretion sys 83.9 1.2 2.7E-05 47.7 4.3 56 209-267 139-195 (670)
351 cd01121 Sms Sms (bacterial rad 83.8 2.3 5E-05 42.5 5.9 87 208-298 81-171 (372)
352 PRK09519 recA DNA recombinatio 83.8 1.9 4.1E-05 47.1 5.7 44 209-252 60-103 (790)
353 TIGR01650 PD_CobS cobaltochela 83.8 2.5 5.4E-05 41.6 6.1 38 193-230 47-85 (327)
354 PRK05986 cob(I)alamin adenolsy 83.8 2 4.4E-05 39.0 5.1 40 208-247 21-60 (191)
355 PF00154 RecA: recA bacterial 83.7 2.2 4.7E-05 41.9 5.6 46 209-254 53-98 (322)
356 PRK00131 aroK shikimate kinase 83.5 0.73 1.6E-05 39.3 2.0 22 208-229 3-24 (175)
357 PF05621 TniB: Bacterial TniB 83.4 0.62 1.3E-05 45.3 1.7 104 195-298 38-158 (302)
358 PRK11034 clpA ATP-dependent Cl 83.3 7.6 0.00016 42.5 10.1 35 197-231 193-229 (758)
359 TIGR00929 VirB4_CagE type IV s 83.3 2.1 4.5E-05 46.2 5.8 50 209-263 434-484 (785)
360 PRK12402 replication factor C 83.2 3.1 6.8E-05 39.7 6.5 33 199-231 23-58 (337)
361 PRK05022 anaerobic nitric oxid 83.2 4.7 0.0001 41.7 8.1 89 206-300 207-296 (509)
362 PRK13721 conjugal transfer ATP 83.2 2.8 6.1E-05 46.1 6.8 50 209-263 449-498 (844)
363 TIGR02639 ClpA ATP-dependent C 83.1 2 4.4E-05 46.5 5.6 24 208-231 202-225 (731)
364 PRK13873 conjugal transfer ATP 83.1 1.6 3.4E-05 47.8 4.8 39 210-248 442-481 (811)
365 KOG1805|consensus 83.0 3.5 7.6E-05 45.8 7.3 66 194-259 669-735 (1100)
366 cd00561 CobA_CobO_BtuR ATP:cor 82.8 2.3 4.9E-05 37.6 4.9 34 211-244 4-37 (159)
367 COG3587 Restriction endonuclea 82.7 1.5 3.3E-05 47.9 4.3 46 209-254 74-121 (985)
368 PRK11331 5-methylcytosine-spec 82.6 1.6 3.5E-05 44.7 4.4 34 195-228 180-213 (459)
369 PRK00889 adenylylsulfate kinas 82.6 2.3 5.1E-05 36.9 4.9 36 208-243 3-38 (175)
370 TIGR02767 TraG-Ti Ti-type conj 82.5 2.1 4.5E-05 45.7 5.3 57 209-268 211-269 (623)
371 TIGR03600 phage_DnaB phage rep 82.5 2.9 6.2E-05 42.0 6.1 39 206-244 191-230 (421)
372 PF04665 Pox_A32: Poxvirus A32 82.3 2.1 4.6E-05 40.3 4.7 35 210-245 14-49 (241)
373 KOG1806|consensus 82.1 2.2 4.7E-05 47.6 5.3 66 194-259 738-805 (1320)
374 PF00308 Bac_DnaA: Bacterial d 82.0 3.9 8.5E-05 37.5 6.3 34 211-245 36-72 (219)
375 PRK00300 gmk guanylate kinase; 82.0 1.4 3E-05 39.2 3.3 22 208-229 4-25 (205)
376 TIGR02880 cbbX_cfxQ probable R 81.8 2.8 6.1E-05 40.1 5.5 20 209-228 58-77 (284)
377 PRK13891 conjugal transfer pro 81.8 1.9 4.1E-05 47.6 4.9 39 210-248 489-528 (852)
378 TIGR00767 rho transcription te 81.8 0.82 1.8E-05 46.3 1.9 22 207-228 166-187 (415)
379 PHA02244 ATPase-like protein 81.8 2 4.3E-05 43.1 4.5 24 206-229 116-139 (383)
380 PF02367 UPF0079: Uncharacteri 81.7 0.87 1.9E-05 38.5 1.8 43 205-250 11-53 (123)
381 COG0606 Predicted ATPase with 81.7 1.3 2.9E-05 45.4 3.4 28 200-227 188-216 (490)
382 PRK13822 conjugal transfer cou 81.6 2 4.4E-05 45.9 4.8 57 209-268 224-281 (641)
383 PRK13768 GTPase; Provisional 81.6 2.2 4.7E-05 40.1 4.6 33 211-243 4-36 (253)
384 PRK04301 radA DNA repair and r 81.6 3 6.4E-05 40.3 5.6 37 209-245 102-144 (317)
385 PRK10820 DNA-binding transcrip 81.6 4.6 0.0001 42.0 7.4 88 206-299 224-312 (520)
386 TIGR03263 guanyl_kin guanylate 81.5 1.5 3.2E-05 38.1 3.2 22 209-230 1-22 (180)
387 PRK08506 replicative DNA helic 81.4 3.7 8E-05 42.2 6.6 40 206-245 189-228 (472)
388 PHA00350 putative assembly pro 81.4 3.5 7.5E-05 41.7 6.2 29 212-240 4-33 (399)
389 TIGR02238 recomb_DMC1 meiotic 81.4 2.7 5.8E-05 41.0 5.2 39 209-247 96-140 (313)
390 PRK14087 dnaA chromosomal repl 81.3 4.5 9.8E-05 41.3 7.1 46 210-257 142-190 (450)
391 TIGR00764 lon_rel lon-related 81.3 4 8.7E-05 43.4 6.9 38 206-244 34-73 (608)
392 PRK13709 conjugal transfer nic 81.2 6 0.00013 47.0 8.8 63 192-254 965-1033(1747)
393 COG3972 Superfamily I DNA and 81.1 1.2 2.6E-05 46.2 2.8 66 194-260 162-229 (660)
394 PHA00729 NTP-binding motif con 81.1 3.6 7.7E-05 38.4 5.7 47 210-257 18-77 (226)
395 CHL00095 clpC Clp protease ATP 81.0 5.3 0.00012 43.9 8.0 24 208-231 199-222 (821)
396 KOG0060|consensus 81.0 1.4 3.1E-05 46.3 3.4 21 208-228 460-480 (659)
397 PF09439 SRPRB: Signal recogni 81.0 1.5 3.1E-05 39.6 3.0 23 209-231 3-25 (181)
398 TIGR00041 DTMP_kinase thymidyl 81.0 4.2 9E-05 35.7 6.0 35 209-243 3-37 (195)
399 PRK10078 ribose 1,5-bisphospho 80.9 1.3 2.8E-05 39.2 2.6 21 209-229 2-22 (186)
400 KOG0745|consensus 80.6 1 2.2E-05 46.0 2.1 21 208-228 225-245 (564)
401 PF05707 Zot: Zonular occluden 80.5 2.3 5E-05 38.0 4.2 31 212-242 3-34 (193)
402 cd03114 ArgK-like The function 80.5 3.1 6.8E-05 35.8 4.9 32 212-243 2-33 (148)
403 TIGR00368 Mg chelatase-related 80.4 1.6 3.5E-05 45.3 3.5 22 207-228 209-230 (499)
404 PRK00091 miaA tRNA delta(2)-is 80.4 1.2 2.6E-05 43.3 2.4 20 210-229 5-24 (307)
405 PF02456 Adeno_IVa2: Adenoviru 80.4 1.9 4E-05 42.4 3.7 41 211-251 89-131 (369)
406 PRK07261 topology modulation p 80.4 1.3 2.8E-05 39.0 2.4 18 211-228 2-19 (171)
407 PRK08118 topology modulation p 80.3 1.3 2.8E-05 38.9 2.4 20 210-229 2-21 (167)
408 PF14532 Sigma54_activ_2: Sigm 80.3 2.5 5.3E-05 35.5 4.1 28 201-228 13-40 (138)
409 CHL00181 cbbX CbbX; Provisiona 80.2 3.6 7.8E-05 39.5 5.6 23 209-231 59-81 (287)
410 cd02034 CooC The accessory pro 79.8 3.5 7.7E-05 34.1 4.8 32 212-243 2-33 (116)
411 PRK14530 adenylate kinase; Pro 79.8 1.7 3.7E-05 39.4 3.1 22 208-229 2-23 (215)
412 TIGR02881 spore_V_K stage V sp 79.7 1.6 3.4E-05 40.9 3.0 22 209-230 42-63 (261)
413 TIGR02322 phosphon_PhnN phosph 79.6 1.4 3.1E-05 38.3 2.5 20 209-228 1-20 (179)
414 PRK06696 uridine kinase; Valid 79.5 3.1 6.7E-05 38.0 4.8 20 211-230 24-43 (223)
415 cd02023 UMPK Uridine monophosp 79.4 3.1 6.6E-05 37.0 4.6 17 212-228 2-18 (198)
416 cd00227 CPT Chloramphenicol (C 79.4 1.5 3.3E-05 38.3 2.6 22 209-230 2-23 (175)
417 cd00071 GMPK Guanosine monopho 79.4 1.8 3.9E-05 36.6 3.0 19 212-230 2-20 (137)
418 PRK00411 cdc6 cell division co 79.3 5.2 0.00011 39.3 6.6 35 209-243 55-91 (394)
419 PRK05748 replicative DNA helic 79.2 3.3 7.1E-05 42.1 5.3 51 206-257 200-251 (448)
420 PRK11361 acetoacetate metaboli 79.1 8.5 0.00018 38.5 8.2 90 205-300 162-252 (457)
421 TIGR00708 cobA cob(I)alamin ad 79.0 3.6 7.8E-05 36.8 4.8 33 211-243 7-39 (173)
422 PF13173 AAA_14: AAA domain 78.8 3.3 7.2E-05 34.2 4.4 35 209-244 2-36 (128)
423 KOG2228|consensus 78.7 3.8 8.1E-05 40.8 5.2 94 207-304 47-156 (408)
424 PF00485 PRK: Phosphoribulokin 78.6 3.4 7.3E-05 36.8 4.6 19 212-230 2-20 (194)
425 PHA03333 putative ATPase subun 78.5 9.2 0.0002 41.4 8.4 71 192-262 167-241 (752)
426 PF05127 Helicase_RecD: Helica 78.5 0.81 1.8E-05 41.1 0.6 49 213-261 1-50 (177)
427 COG2204 AtoC Response regulato 78.4 5.9 0.00013 40.8 6.8 86 207-298 162-248 (464)
428 PRK14086 dnaA chromosomal repl 78.3 5.6 0.00012 42.4 6.8 44 211-255 316-361 (617)
429 TIGR01313 therm_gnt_kin carboh 78.3 1.3 2.8E-05 38.0 1.8 18 212-229 1-18 (163)
430 PF02283 CobU: Cobinamide kina 78.2 7 0.00015 34.6 6.4 45 212-259 1-45 (167)
431 PF08423 Rad51: Rad51; InterP 78.2 4 8.7E-05 38.4 5.2 53 209-261 38-96 (256)
432 cd02025 PanK Pantothenate kina 77.9 3.5 7.5E-05 37.9 4.6 17 212-228 2-18 (220)
433 PRK07667 uridine kinase; Provi 77.9 3.8 8.3E-05 36.6 4.8 19 211-229 19-37 (193)
434 COG0468 RecA RecA/RadA recombi 77.8 3.3 7.2E-05 39.8 4.6 51 209-259 60-110 (279)
435 PF13191 AAA_16: AAA ATPase do 77.8 2.8 6.1E-05 35.9 3.8 21 208-228 23-43 (185)
436 COG3267 ExeA Type II secretory 77.8 7.2 0.00016 37.3 6.7 38 207-245 48-86 (269)
437 TIGR00665 DnaB replicative DNA 77.4 4 8.7E-05 41.1 5.3 40 206-245 192-232 (434)
438 PHA03368 DNA packaging termina 77.3 15 0.00032 39.8 9.5 92 208-300 253-367 (738)
439 TIGR03574 selen_PSTK L-seryl-t 77.2 3.7 8E-05 38.0 4.6 32 212-243 2-33 (249)
440 TIGR00455 apsK adenylylsulfate 77.0 5.3 0.00012 35.0 5.4 37 207-243 16-52 (184)
441 cd02027 APSK Adenosine 5'-phos 77.0 4.3 9.3E-05 34.7 4.7 32 212-243 2-33 (149)
442 PRK13531 regulatory ATPase Rav 77.0 2.4 5.2E-05 43.9 3.5 24 205-228 35-58 (498)
443 PRK03846 adenylylsulfate kinas 76.9 4.2 9.2E-05 36.3 4.8 37 207-243 22-58 (198)
444 TIGR00150 HI0065_YjeE ATPase, 76.8 2.1 4.6E-05 36.6 2.6 44 207-253 20-63 (133)
445 PF00625 Guanylate_kin: Guanyl 76.7 2.6 5.7E-05 37.0 3.3 23 209-231 2-24 (183)
446 COG1875 NYN ribonuclease and A 76.7 4.6 0.0001 40.6 5.3 63 189-251 222-290 (436)
447 COG0324 MiaA tRNA delta(2)-iso 76.7 1.8 3.8E-05 42.3 2.4 20 210-229 4-23 (308)
448 PTZ00301 uridine kinase; Provi 76.7 4.2 9.1E-05 37.3 4.7 18 211-228 5-22 (210)
449 PRK05342 clpX ATP-dependent pr 76.7 1.9 4.1E-05 43.7 2.6 21 209-229 108-128 (412)
450 TIGR00382 clpX endopeptidase C 76.6 1.9 4E-05 43.8 2.6 21 209-229 116-136 (413)
451 PRK05595 replicative DNA helic 76.2 4 8.6E-05 41.5 4.9 40 207-246 199-239 (444)
452 TIGR00174 miaA tRNA isopenteny 76.1 1.9 4.2E-05 41.5 2.5 19 212-230 2-20 (287)
453 TIGR00750 lao LAO/AO transport 75.9 4.6 9.9E-05 38.8 5.0 36 208-243 33-68 (300)
454 PHA02544 44 clamp loader, smal 75.9 6.2 0.00013 37.6 5.9 34 211-247 44-78 (316)
455 PHA02542 41 41 helicase; Provi 75.9 4 8.7E-05 42.1 4.8 37 208-244 189-225 (473)
456 PRK14088 dnaA chromosomal repl 75.9 6.3 0.00014 40.1 6.2 45 210-255 131-177 (440)
457 PRK15429 formate hydrogenlyase 75.8 5.4 0.00012 42.8 6.0 36 207-242 397-432 (686)
458 PTZ00112 origin recognition co 75.7 2 4.2E-05 47.8 2.6 20 212-231 784-803 (1164)
459 PLN03187 meiotic recombination 75.7 5.5 0.00012 39.4 5.6 40 208-247 125-170 (344)
460 PRK15424 propionate catabolism 75.6 8.6 0.00019 40.4 7.2 91 206-300 239-337 (538)
461 PRK10923 glnG nitrogen regulat 75.5 14 0.0003 37.3 8.6 87 206-298 158-245 (469)
462 PF00005 ABC_tran: ABC transpo 75.4 2.8 6.1E-05 34.5 3.0 20 208-227 10-29 (137)
463 COG1136 SalX ABC-type antimicr 75.3 3.5 7.6E-05 38.5 3.8 20 207-226 29-48 (226)
464 PF00158 Sigma54_activat: Sigm 75.2 6 0.00013 34.9 5.2 87 207-299 20-107 (168)
465 TIGR02329 propionate_PrpR prop 75.2 9.3 0.0002 40.0 7.4 90 206-300 232-322 (526)
466 PRK09376 rho transcription ter 75.0 2.2 4.7E-05 43.2 2.6 22 207-228 167-188 (416)
467 cd02035 ArsA ArsA ATPase funct 74.9 4.7 0.0001 36.7 4.6 32 212-243 2-33 (217)
468 PF01656 CbiA: CobQ/CobB/MinD/ 74.8 5.4 0.00012 34.6 4.8 32 212-243 2-33 (195)
469 PRK05480 uridine/cytidine kina 74.6 4.9 0.00011 36.0 4.6 20 209-228 6-25 (209)
470 PRK13830 conjugal transfer pro 74.5 3.7 8E-05 45.2 4.4 36 210-245 457-493 (818)
471 PRK06217 hypothetical protein; 74.2 2.3 5E-05 37.5 2.3 20 210-229 2-21 (183)
472 PRK08233 hypothetical protein; 74.1 3 6.6E-05 35.9 3.0 19 210-228 4-22 (182)
473 PRK14723 flhF flagellar biosyn 74.1 8.4 0.00018 42.1 6.9 54 209-262 185-242 (767)
474 cd02020 CMPK Cytidine monophos 74.1 2.4 5.3E-05 35.0 2.3 18 212-229 2-19 (147)
475 PF01745 IPT: Isopentenyl tran 74.0 3.7 7.9E-05 38.4 3.6 20 212-231 4-23 (233)
476 PRK07414 cob(I)yrinic acid a,c 73.9 5.7 0.00012 35.8 4.7 39 210-248 22-60 (178)
477 PRK13407 bchI magnesium chelat 73.9 4.7 0.0001 39.7 4.6 30 199-228 13-48 (334)
478 cd00464 SK Shikimate kinase (S 73.8 2.5 5.5E-05 35.4 2.4 20 211-230 1-20 (154)
479 cd02019 NK Nucleoside/nucleoti 73.8 7.3 0.00016 28.8 4.6 17 212-228 2-18 (69)
480 PRK06731 flhF flagellar biosyn 73.7 12 0.00026 35.8 7.1 47 208-254 74-123 (270)
481 cd01428 ADK Adenylate kinase ( 73.7 3.1 6.8E-05 36.3 3.0 19 211-229 1-19 (194)
482 PF13500 AAA_26: AAA domain; P 73.7 5.7 0.00012 35.3 4.7 34 212-245 4-37 (199)
483 PF10236 DAP3: Mitochondrial r 73.6 5.9 0.00013 38.4 5.1 26 209-234 23-48 (309)
484 PRK14737 gmk guanylate kinase; 73.4 3.3 7.2E-05 37.1 3.1 24 208-231 3-26 (186)
485 cd01125 repA Hexameric Replica 73.3 9.2 0.0002 35.1 6.2 34 211-244 3-48 (239)
486 TIGR02688 conserved hypothetic 73.3 12 0.00025 38.5 7.3 23 206-228 206-228 (449)
487 TIGR03238 dnd_assoc_3 dnd syst 73.3 3.9 8.5E-05 42.4 3.9 33 195-227 11-50 (504)
488 PRK06762 hypothetical protein; 73.2 2.6 5.6E-05 36.2 2.3 20 210-229 3-22 (166)
489 PRK08356 hypothetical protein; 73.1 2.9 6.2E-05 37.3 2.7 20 210-229 6-25 (195)
490 PF06068 TIP49: TIP49 C-termin 73.0 2.6 5.7E-05 42.3 2.6 29 207-236 48-76 (398)
491 TIGR00390 hslU ATP-dependent p 72.9 3.7 8.1E-05 41.9 3.6 21 209-229 47-67 (441)
492 TIGR00235 udk uridine kinase. 72.9 2.3 5.1E-05 38.2 2.0 20 209-228 6-25 (207)
493 PRK13973 thymidylate kinase; P 72.8 10 0.00022 34.4 6.2 36 208-243 2-37 (213)
494 TIGR02928 orc1/cdc6 family rep 72.7 5.1 0.00011 38.8 4.5 21 210-230 41-61 (365)
495 PF05876 Terminase_GpA: Phage 72.6 5 0.00011 42.2 4.7 69 194-262 16-88 (557)
496 cd02021 GntK Gluconate kinase 72.5 2.8 6E-05 35.3 2.3 18 212-229 2-19 (150)
497 TIGR02915 PEP_resp_reg putativ 72.4 15 0.00032 36.7 7.9 87 207-299 160-247 (445)
498 COG2109 BtuR ATP:corrinoid ade 72.4 6.5 0.00014 35.9 4.7 35 211-245 30-64 (198)
499 PF02572 CobA_CobO_BtuR: ATP:c 72.3 6.5 0.00014 35.1 4.7 38 211-248 5-42 (172)
500 COG0714 MoxR-like ATPases [Gen 72.3 4.3 9.4E-05 39.3 3.9 25 206-230 40-64 (329)
No 1
>KOG0947|consensus
Probab=99.93 E-value=7.4e-26 Score=236.33 Aligned_cols=164 Identities=46% Similarity=0.615 Sum_probs=150.8
Q ss_pred CCCCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q psy2760 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKT 238 (333)
Q Consensus 159 ~~~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ 238 (333)
.......+|+...+++..+.+|.+-.+..+..|||+++++|++||-++.+|.+|+|.|+|++|||+++.+||..+..+++
T Consensus 262 ~t~~~k~~wa~~vd~~~~~~df~~lVpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~T 341 (1248)
T KOG0947|consen 262 STRPVKFEWAHVVDLSSLVEDFYQLVPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMT 341 (1248)
T ss_pred cCCCccccceeeeecccchHHHHHhchhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhcc
Confidence 33335679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcceEEecc---------------CcceEeccccccccccCcC
Q psy2760 239 RTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 239 ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~ 303 (333)
|++|.+|.+||.+|.+++|++.|+++|++|||.++++.+.|+|+|+ ++..+|.||.||+++..||
T Consensus 342 R~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRG 421 (1248)
T KOG0947|consen 342 RTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERG 421 (1248)
T ss_pred ceEecchhhhhccchHHHHHHhccccceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccc
Confidence 9999999999999999999999999999999999999999999987 6788999999999999999
Q ss_pred cccccchhh---hhhheeccCc
Q psy2760 304 WKPKVQLDD---LFDWTMASDA 322 (333)
Q Consensus 304 ~~~~~~l~~---l~~l~~~~d~ 322 (333)
..|+.-++= -++++|.|++
T Consensus 422 vVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 422 VVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred ccceeeeeeccccceEEEEecc
Confidence 999854443 3778887764
No 2
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.4e-22 Score=217.35 Aligned_cols=137 Identities=42% Similarity=0.501 Sum_probs=126.7
Q ss_pred cccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCc-
Q psy2760 186 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV- 264 (333)
Q Consensus 186 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~v- 264 (333)
.....+||.++++|++|+..+.+|.+|+||||||||||+++.+||..++..|.|++|.+|.+||.+|++++|..+|+++
T Consensus 111 ~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 111 PPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred cHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3566789999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ---EEEeCCCCCCCCcceEEecc---------------CcceEeccccccccccCcCcccccchhhh---hhheeccCc
Q psy2760 265 ---GLIDDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQLDDL---FDWTMASDA 322 (333)
Q Consensus 265 ---glltGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~l~~l---~~l~~~~d~ 322 (333)
|++|||.++++.+.|+++|+ ++..+|.||+|++++..|||.|+..++-+ +++++.|++
T Consensus 191 ~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 191 DMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred hhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCC
Confidence 99999999999999999987 68889999999999999999999755544 567777765
No 3
>KOG0948|consensus
Probab=99.85 E-value=8.3e-22 Score=202.38 Aligned_cols=136 Identities=42% Similarity=0.515 Sum_probs=125.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcE
Q psy2760 186 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 265 (333)
Q Consensus 186 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vg 265 (333)
..++.+||.++|+|.+||.++..+.+|+|+|+|++|||+++.+||..+++.+.|+||.+|.+||.+|.|++|..-|++||
T Consensus 121 ~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 121 PPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred CcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcceEEecc---------------CcceEeccccccccccCcCcccccchhh---hhhheeccC
Q psy2760 266 LIDDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQLDD---LFDWTMASD 321 (333)
Q Consensus 266 lltGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~l~~---l~~l~~~~d 321 (333)
+.|||..+++.+.|+|+|+ .++.+|.||+||..+..||..|+.+++- .++.+..|+
T Consensus 201 LMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 201 LMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 9999999999999999987 6788999999999999999999865443 355665554
No 4
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.81 E-value=4.5e-21 Score=207.11 Aligned_cols=221 Identities=18% Similarity=0.186 Sum_probs=153.9
Q ss_pred chhhhhhhhhcccccccccccchhHHHhh-cc-----CcccccccccccccccCCchhhhhhhcCCCCCCcccCCCCC-C
Q psy2760 73 SIHDFNKHLKFWKPKVQLVAGIINLIQLG-GE-----NASKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIP-Q 145 (333)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 145 (333)
...++....|+...++++|+++++++..| +. .++++|+..|++... +.++ ...+++ +
T Consensus 355 ~~~dy~~l~y~~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k~---~~~~-------------~~~~~a~~ 418 (926)
T TIGR00580 355 IERDYLVLEYAGEDKLYVPVEQLHLISRYVGGSGKNPALDKLGGKSWEKTKA---KVKK-------------SVREIAAK 418 (926)
T ss_pred cceeEEEEEECCCCEEEEEHHHcCceeeecCCCCCCCcccccCcHHHHHHHH---HHHH-------------HHHHHHHH
Confidence 35678888899999999999999999998 32 588999999998821 1110 001111 1
Q ss_pred ccCCcccccCCCCCCCCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC------CcEEEEcCCC
Q psy2760 146 EVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH------NHVFVTAHTS 219 (333)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTG 219 (333)
++.....+.............|... ....|||.+++.|.+|++.+..+ ++++++||||
T Consensus 419 l~~l~a~r~~~~~~~~~~~~~~~~~----------------~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTG 482 (926)
T TIGR00580 419 LIELYAKRKAIKGHAFPPDLEWQQE----------------FEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVG 482 (926)
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHH----------------HHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCC
Confidence 1111111211110110011122221 24557889999999999998654 7999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-----------CCcceEEecc
Q psy2760 220 AGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-----------PDVEKLLEDL 284 (333)
Q Consensus 220 SGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-----------~~a~ili~t~ 284 (333)
||||++|+.|++.++..+.+++|++||++||.|+++.|+++|++ +++++|..+.. ....++|.|+
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 99999999999988888899999999999999999999998874 56788765521 2346788876
Q ss_pred ----------CcceEeccccccccccCcCcccccchhhhhhheeccCcchhhh
Q psy2760 285 ----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATTLEI 327 (333)
Q Consensus 285 ----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~~~d~~~~e~ 327 (333)
++.++|+||.|.|+...|. ....+-..++.+++|++++-.+
T Consensus 563 ~ll~~~v~f~~L~llVIDEahrfgv~~~~--~L~~~~~~~~vL~~SATpiprt 613 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLIIDEEQRFGVKQKE--KLKELRTSVDVLTLSATPIPRT 613 (926)
T ss_pred HHhhCCCCcccCCEEEeecccccchhHHH--HHHhcCCCCCEEEEecCCCHHH
Confidence 6899999999998654322 1111223467888888875443
No 5
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.79 E-value=2.8e-20 Score=204.77 Aligned_cols=222 Identities=18% Similarity=0.198 Sum_probs=155.4
Q ss_pred chhhhhhhhhcccccccccccchhHHHhh-cc-----CcccccccccccccccCCchhhhhhhcCCCCCCcccCCCCC-C
Q psy2760 73 SIHDFNKHLKFWKPKVQLVAGIINLIQLG-GE-----NASKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIP-Q 145 (333)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 145 (333)
...++....|++.+++++|+++++++..| +. .++++|+..|++.. ++.++ ...+++ +
T Consensus 504 ~~~~~~~l~y~~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~~w~~~k---~~~~~-------------~~~~~a~~ 567 (1147)
T PRK10689 504 IKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR---QKAAE-------------KVRDVAAE 567 (1147)
T ss_pred cceeEEEEEECCCCeEEeeHHHhCcEeeecCCCCCCCccccCCcHHHHHHH---HHHHH-------------HHHHHHHH
Confidence 34788889999999999999999999998 32 58899999999871 11110 001111 1
Q ss_pred ccCCcccccCCCCCCCCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC------CcEEEEcCCC
Q psy2760 146 EVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH------NHVFVTAHTS 219 (333)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTG 219 (333)
++..-..+.........+...|... +...|||.+++.|.+|++.+..+ +++++||+||
T Consensus 568 l~~~~a~r~~~~~~~~~~~~~~~~~----------------~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TG 631 (1147)
T PRK10689 568 LLDIYAQRAAKEGFAFKHDREQYQL----------------FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 (1147)
T ss_pred HHHHHHHHhhccCCCCCCCHHHHHH----------------HHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCC
Confidence 2211112211111111111233322 35678999999999999998665 8999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-----------CCcceEEecc
Q psy2760 220 AGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-----------PDVEKLLEDL 284 (333)
Q Consensus 220 SGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-----------~~a~ili~t~ 284 (333)
+|||++|+.+++.....+.++++++||++||.|+++.|+++|+. +..++|..+.. ....++|+|+
T Consensus 632 sGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp 711 (1147)
T PRK10689 632 FGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711 (1147)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECH
Confidence 99999999988877788999999999999999999999988864 56677765432 2346888886
Q ss_pred ----------CcceEeccccccccccCcCcccccchhhhhhheeccCcchhhhh
Q psy2760 285 ----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATTLEIF 328 (333)
Q Consensus 285 ----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~~~d~~~~e~~ 328 (333)
++.++|+||.|.|+...+ ....++-..++.+++|++++-.+.
T Consensus 712 ~lL~~~v~~~~L~lLVIDEahrfG~~~~--e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 712 KLLQSDVKWKDLGLLIVDEEHRFGVRHK--ERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred HHHhCCCCHhhCCEEEEechhhcchhHH--HHHHhcCCCCcEEEEcCCCCHHHH
Confidence 678999999999964321 111122334678899988765543
No 6
>PRK02362 ski2-like helicase; Provisional
Probab=99.79 E-value=7e-19 Score=187.08 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=118.3
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 250 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa 250 (333)
+|++.+.+.++..|+. .|+|+|.+|++. +.+|+|++++||||||||++|++|++..+.++.+++|++||++||
T Consensus 7 ~lp~~~~~~l~~~g~~------~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 7 PLPEGVIEFYEAEGIE------ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred CCCHHHHHHHHhCCCC------cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 4777888877776665 799999999998 689999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhc--C-CcEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCccccc
Q psy2760 251 NQKYRDFRETF--Q-DVGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 251 ~Q~~~~l~~~f--~-~vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
.|++++|++.. + .++.++|+..... ...++|+|+ ++.++|+||+|++++..||..++.
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~ 160 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEV 160 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHH
Confidence 99999998631 2 2788999876543 357888885 479999999999999999877765
Q ss_pred chhhh------hhheeccCc
Q psy2760 309 QLDDL------FDWTMASDA 322 (333)
Q Consensus 309 ~l~~l------~~l~~~~d~ 322 (333)
.+.++ ++.+.+|++
T Consensus 161 il~rl~~~~~~~qii~lSAT 180 (737)
T PRK02362 161 TLAKLRRLNPDLQVVALSAT 180 (737)
T ss_pred HHHHHHhcCCCCcEEEEccc
Confidence 22222 345666554
No 7
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=3.9e-19 Score=191.33 Aligned_cols=226 Identities=19% Similarity=0.198 Sum_probs=164.4
Q ss_pred HHHhhcCCccccchhhhhhhhhcccccccccccchhHHHhhcc------CcccccccccccccccCCchhhhhhhcCCCC
Q psy2760 61 LEDLNIGGLDELSIHDFNKHLKFWKPKVQLVAGIINLIQLGGE------NASKFEQGLWESHEVISGDAKEEQEKATVFP 134 (333)
Q Consensus 61 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 134 (333)
|+++.++| ..+|+++..|++.+++++|+++++|+++|.. .+|++|+..|++. +.+.+
T Consensus 490 l~tl~~~g----~~~dyL~l~Ya~~dkLyVPVeql~lisrY~g~~~~~p~L~kLG~~~W~k~---K~K~~---------- 552 (1139)
T COG1197 490 LETLEVGG----IERDYLELEYAGEDKLYVPVEQLHLISRYVGASDEAPKLHKLGGGAWKKA---KAKAR---------- 552 (1139)
T ss_pred eEEEecCC----CccceEEEEEcCCCeEEEEHHHhhHHhhccCCCCCCccccccCcHHHHHH---HHHHH----------
Confidence 55666777 7899999999999999999999999999933 5899999999988 21111
Q ss_pred CCcccCCCCC-CccCCcccccCCCCCCCCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHH----HcC
Q psy2760 135 SNEEENNVIP-QEVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL----EEH 209 (333)
Q Consensus 135 ~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l----~~g 209 (333)
+...+++ +++.....+....+....+-..|... ++..|||.-|+.|..||..+ .++
T Consensus 553 ---~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~----------------F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 553 ---KKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEE----------------FEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred ---HHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHH----------------HHhcCCCcCCHHHHHHHHHHHHHhccC
Confidence 0111122 22222222222211222233345443 47789999999999999996 344
Q ss_pred --CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCC--------------
Q psy2760 210 --NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPV-------------- 273 (333)
Q Consensus 210 --~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~-------------- 273 (333)
.+.|+||..|-|||.+++-|++.+...|++|.++|||.-||+|+++.|+++|.+..+-.+.++.
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~l 693 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGL 693 (1139)
T ss_pred CcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999974333222221
Q ss_pred -CCCcceEEecc----------CcceEeccccccccccCcCcccccchhhhhhheeccCcch
Q psy2760 274 -FPDVEKLLEDL----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATT 324 (333)
Q Consensus 274 -~~~a~ili~t~----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~~~d~~~ 324 (333)
....+++|.|+ +++++|+||-|.|+...+-. ..++-..++.+.+|++|+
T Consensus 694 a~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEk--LK~Lr~~VDvLTLSATPI 753 (1139)
T COG1197 694 AEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEK--LKELRANVDVLTLSATPI 753 (1139)
T ss_pred hcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHH--HHHHhccCcEEEeeCCCC
Confidence 23346888887 79999999999999765321 122344567777777764
No 8
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.72 E-value=2e-17 Score=175.87 Aligned_cols=130 Identities=25% Similarity=0.248 Sum_probs=107.7
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHH
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALS 250 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa 250 (333)
+...+..+++..++. ++++.|+.++.. +..++|+++|+|||||||++++++|+..+.+ +.+++|++|+||||
T Consensus 16 ~~~~v~~i~~~~~~~------el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGID------ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChH------HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 444556666554544 678888888877 4668999999999999999999999988766 58999999999999
Q ss_pred HHHHHHHH--HhcCC-cEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCccccc
Q psy2760 251 NQKYRDFR--ETFQD-VGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 251 ~Q~~~~l~--~~f~~-vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
+|++++|+ +.|+- |++.|||..... +..++|.|+ .+.++|+||+|++++..||+.-+.
T Consensus 90 ~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 90 EEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh
Confidence 99999998 44553 999999998654 356888876 588999999999999999998775
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.72 E-value=5.8e-17 Score=161.60 Aligned_cols=124 Identities=18% Similarity=0.031 Sum_probs=99.1
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----------CCCeEE
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----------HKTRTI 241 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----------~g~ral 241 (333)
+|++.+.+.+...|+. .|+++|++|++.++.|+|++++||||||||++|++|++..+. .+.++|
T Consensus 14 ~l~~~l~~~l~~~g~~------~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 14 ALHPQVVEALEKKGFH------NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5677777776665655 799999999999999999999999999999999999985441 246899
Q ss_pred EEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEeccccc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIH 295 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H 295 (333)
|++|||+||.|+++.+...... ++.+.|+.... ....++|+|+ ++.++|+||+|
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 9999999999999888765432 67777775432 2246888886 57889999999
Q ss_pred cccccC
Q psy2760 296 DFNKHL 301 (333)
Q Consensus 296 ~~~~~~ 301 (333)
.+.+.+
T Consensus 168 ~l~~~~ 173 (423)
T PRK04837 168 RMFDLG 173 (423)
T ss_pred HHhhcc
Confidence 876543
No 10
>PRK00254 ski2-like helicase; Provisional
Probab=99.71 E-value=4.7e-17 Score=172.75 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=114.8
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKAL 249 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraL 249 (333)
++++.+.+.++..|+. .|+++|.+|++. +..|+|++++||||||||++|.+|++..+ ..+.++||++|+++|
T Consensus 7 ~l~~~~~~~l~~~g~~------~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aL 80 (720)
T PRK00254 7 RVDERIKRVLKERGIE------ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKAL 80 (720)
T ss_pred CCCHHHHHHHHhCCCC------CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 4677888887777766 899999999987 79999999999999999999999998664 467899999999999
Q ss_pred HHHHHHHHHHh--cC-CcEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCcccc
Q psy2760 250 SNQKYRDFRET--FQ-DVGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 250 a~Q~~~~l~~~--f~-~vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~ 307 (333)
++|++++|++. ++ .++.++|+..... +..++|+|+ ++.++|+||+|.+++..||....
T Consensus 81 a~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 81 AEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHH
Confidence 99999999752 12 2788999876432 346888874 57899999999999888887655
Q ss_pred cchh---hhhhheeccCc
Q psy2760 308 VQLD---DLFDWTMASDA 322 (333)
Q Consensus 308 ~~l~---~l~~l~~~~d~ 322 (333)
..+. ...+.+.+|++
T Consensus 161 ~il~~l~~~~qiI~lSAT 178 (720)
T PRK00254 161 MILTHMLGRAQILGLSAT 178 (720)
T ss_pred HHHHhcCcCCcEEEEEcc
Confidence 4221 12445556555
No 11
>PRK01172 ski2-like helicase; Provisional
Probab=99.71 E-value=5.1e-17 Score=171.15 Aligned_cols=130 Identities=23% Similarity=0.214 Sum_probs=106.8
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 251 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~ 251 (333)
+|++.+.+.++. .+|.++++|.++++.+.+|++++++||||||||+++.++++..+..+.+++|++|+++||.
T Consensus 7 ~l~~~~~~~~~~-------~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 7 GYDDEFLNLFTG-------NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred CCCHHHHHHHhh-------CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 356666665533 2457999999999999999999999999999999999999988877889999999999999
Q ss_pred HHHHHHHHhc--C-CcEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCccccc
Q psy2760 252 QKYRDFRETF--Q-DVGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 252 Q~~~~l~~~f--~-~vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
|++++|++.. + .++..+|+..... ...++++|+ ++.++|+||+|.+++..||.....
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ 158 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLET 158 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHH
Confidence 9999997632 2 2778888866442 357888876 478999999999998888876654
No 12
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.71 E-value=8e-17 Score=171.47 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=104.2
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeE
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRT 240 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ra 240 (333)
.+..|.. .+++.+.+.++..|+. .|+++|.+|++.+.+|+|+++++|||||||++|.+|++..+ .++.++
T Consensus 13 ~~~~~~~--~l~~~l~~~L~~~g~~------~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~a 84 (742)
T TIGR03817 13 RTAPWPA--WAHPDVVAALEAAGIH------RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATA 84 (742)
T ss_pred ccCCCCC--cCCHHHHHHHHHcCCC------cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEE
Confidence 4444443 4677888888777776 79999999999999999999999999999999999999765 346799
Q ss_pred EEEcccHHHHHHHHHHHHHhcC-C--cEEEeCCCCCC------CCcceEEecc-------------------CcceEecc
Q psy2760 241 IYTSPIKALSNQKYRDFRETFQ-D--VGLIDDLPPVF------PDVEKLLEDL-------------------NIGGLDEL 292 (333)
Q Consensus 241 l~l~PtraLa~Q~~~~l~~~f~-~--vglltGd~~~~------~~a~ili~t~-------------------~i~liViD 292 (333)
||++|||||++|+++.+++... + ++.++|+.+.. .+..+++.|+ ++.++|+|
T Consensus 85 L~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViD 164 (742)
T TIGR03817 85 LYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVID 164 (742)
T ss_pred EEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEe
Confidence 9999999999999999987532 2 67788987642 2346777775 35689999
Q ss_pred ccccccc
Q psy2760 293 SIHDFNK 299 (333)
Q Consensus 293 e~H~~~~ 299 (333)
|+|.+.+
T Consensus 165 Eah~~~g 171 (742)
T TIGR03817 165 ECHSYRG 171 (742)
T ss_pred ChhhccC
Confidence 9998854
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.71 E-value=5.8e-17 Score=163.47 Aligned_cols=125 Identities=19% Similarity=0.122 Sum_probs=101.3
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC---------CCeEE
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH---------KTRTI 241 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~---------g~ral 241 (333)
.+|++++...+...++. .|+++|.+|++.++.|+|++++||||||||++|++|++..+.. ..++|
T Consensus 6 l~l~~~l~~~l~~~g~~------~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 6 LGLSPDILRAVAEQGYR------EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred cCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 35777888877766666 8999999999999999999999999999999999999865422 24799
Q ss_pred EEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCC-------CcceEEecc---------------CcceEeccccc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFP-------DVEKLLEDL---------------NIGGLDELSIH 295 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~-------~a~ili~t~---------------~i~liViDe~H 295 (333)
|++|||+||.|+.+.++..+.. +..++|+.+.+. ...++|+|+ ++.++|+||+|
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 9999999999999999875543 455778776432 346888886 46789999999
Q ss_pred cccccC
Q psy2760 296 DFNKHL 301 (333)
Q Consensus 296 ~~~~~~ 301 (333)
.+.+.+
T Consensus 160 ~ll~~~ 165 (456)
T PRK10590 160 RMLDMG 165 (456)
T ss_pred HHhccc
Confidence 876543
No 14
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.69 E-value=5.7e-17 Score=171.20 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=110.0
Q ss_pred ccCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 189 HTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
..+||.|++.|++|++.+..+ ++++++||||||||++|.+|++.....|.+++|++||++||.|+++.+++.+.
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 357999999999999998655 48999999999999999999998888899999999999999999999998775
Q ss_pred C----cEEEeCCCCC-----------CCCcceEEecc----------CcceEeccccccccccCcCcccccchhhhhhhe
Q psy2760 263 D----VGLIDDLPPV-----------FPDVEKLLEDL----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWT 317 (333)
Q Consensus 263 ~----vglltGd~~~-----------~~~a~ili~t~----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~ 317 (333)
. +++++|+.+. .....++|+|+ ++.++|+||.|.|+...|..-... -.....+
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~--~~~~~iL 413 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREK--GENPHVL 413 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHHHhc--CCCCCEE
Confidence 3 7889999873 22456788775 688999999999987766543221 1135678
Q ss_pred eccCcchh
Q psy2760 318 MASDATTL 325 (333)
Q Consensus 318 ~~~d~~~~ 325 (333)
++|++++-
T Consensus 414 ~~SATp~p 421 (681)
T PRK10917 414 VMTATPIP 421 (681)
T ss_pred EEeCCCCH
Confidence 88887653
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.69 E-value=2.2e-16 Score=157.79 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=101.0
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-------CCCeEEEEc
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-------HKTRTIYTS 244 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-------~g~ral~l~ 244 (333)
++++.+.+.+...|+. .|+++|.++++.++.|++++++||||+|||++|++|++..+. .+.+++|++
T Consensus 7 ~l~~~l~~~l~~~g~~------~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 7 ELDESLLEALQDKGYT------RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 5677777777666666 799999999999999999999999999999999999986542 246899999
Q ss_pred ccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEecccccccc
Q psy2760 245 PIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFN 298 (333)
Q Consensus 245 PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~ 298 (333)
||++||.|+++.++..... ++.++|+.... ....++|+|+ ++.++|+||+|.+.
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 9999999999988775432 78889987643 2346888886 46789999999876
Q ss_pred ccC
Q psy2760 299 KHL 301 (333)
Q Consensus 299 ~~~ 301 (333)
+.+
T Consensus 161 ~~~ 163 (434)
T PRK11192 161 DMG 163 (434)
T ss_pred CCC
Confidence 543
No 16
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.69 E-value=6.2e-17 Score=169.55 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=109.6
Q ss_pred ccCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 189 HTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
..+||.|++.|++|++.+..+ .+++++||||||||++|+++++.....|.+++|++||++||.|+++.+++.++
T Consensus 230 ~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 230 ASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 357899999999999998554 36899999999999999999998888899999999999999999999998876
Q ss_pred C----cEEEeCCCCCC-----------CCcceEEecc----------CcceEeccccccccccCcCcccccchh-hhhhh
Q psy2760 263 D----VGLIDDLPPVF-----------PDVEKLLEDL----------NIGGLDELSIHDFNKHLKFWKPKVQLD-DLFDW 316 (333)
Q Consensus 263 ~----vglltGd~~~~-----------~~a~ili~t~----------~i~liViDe~H~~~~~~R~~~~~~~l~-~l~~l 316 (333)
. +++++|+.... .+..+++.|+ ++.++|+||.|.|+...|..-...... .....
T Consensus 310 ~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~ 389 (630)
T TIGR00643 310 PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHV 389 (630)
T ss_pred ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCE
Confidence 3 78899987642 2346788775 689999999999987766543322100 13457
Q ss_pred eeccCcchhh
Q psy2760 317 TMASDATTLE 326 (333)
Q Consensus 317 ~~~~d~~~~e 326 (333)
+++|++++-+
T Consensus 390 l~~SATp~pr 399 (630)
T TIGR00643 390 LVMSATPIPR 399 (630)
T ss_pred EEEeCCCCcH
Confidence 8888876433
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.69 E-value=2e-16 Score=159.30 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=100.3
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~Ptra 248 (333)
+|++.+...+...++. .|+|+|++|++.+..|+|++++||||||||++|.+|++..+.. +.+++|++|||+
T Consensus 10 ~l~~~l~~~l~~~g~~------~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 10 PLPPALLANLNELGYT------EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 4677777766665655 7999999999999999999999999999999999999976643 457999999999
Q ss_pred HHHHHHHHHHHhcC---C--cEEEeCCCCCC-------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 249 LSNQKYRDFRETFQ---D--VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 249 La~Q~~~~l~~~f~---~--vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
||.|+.+.++.... + +..++|+.+.. ....++|+|+ ++.++|+||+|.+.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 99999998876532 2 66788887653 2346888885 47889999999876543
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.69 E-value=2.1e-16 Score=160.07 Aligned_cols=125 Identities=12% Similarity=-0.028 Sum_probs=101.1
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC----------CCeE
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----------KTRT 240 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~----------g~ra 240 (333)
.+|++.+.+.+...|+. .++++|.++++.+..|+|++++||||||||++|++|++..+.. +.++
T Consensus 92 ~~l~~~l~~~l~~~g~~------~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 92 FNLAPELMHAIHDLGFP------YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 35788888887766666 7999999999999999999999999999999999999865421 4689
Q ss_pred EEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC--------CCcceEEecc---------------CcceEeccc
Q psy2760 241 IYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF--------PDVEKLLEDL---------------NIGGLDELS 293 (333)
Q Consensus 241 l~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~--------~~a~ili~t~---------------~i~liViDe 293 (333)
||++||++||.|+++.++..... +..++|+.... ....+++.|+ ++.++|+||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999999775432 56677875432 2346888886 467899999
Q ss_pred cccccccC
Q psy2760 294 IHDFNKHL 301 (333)
Q Consensus 294 ~H~~~~~~ 301 (333)
+|.+...+
T Consensus 246 ah~l~~~~ 253 (475)
T PRK01297 246 ADRMLDMG 253 (475)
T ss_pred HHHHHhcc
Confidence 99886543
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.69 E-value=1.7e-16 Score=162.75 Aligned_cols=129 Identities=16% Similarity=0.051 Sum_probs=99.4
Q ss_pred ccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh----------
Q psy2760 165 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---------- 234 (333)
Q Consensus 165 ~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---------- 234 (333)
..|.. .++++.+.+.++..|+. .|+++|.+|++.++.|+|++++||||||||++|++|++..+
T Consensus 121 ~~f~~-~~l~~~l~~~L~~~g~~------~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 121 LSFSS-CGLPPKLLLNLETAGYE------FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred cCHHh-CCCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 34443 35788888877666655 79999999999999999999999999999999999998543
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCC-------CCCcceEEecc---------------Ccce
Q psy2760 235 NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPV-------FPDVEKLLEDL---------------NIGG 288 (333)
Q Consensus 235 ~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~-------~~~a~ili~t~---------------~i~l 288 (333)
..+.++||++|||+||.|+.+.++..... +..+.|+... .....++|+|+ ++.+
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 14678999999999999999888764433 3344554432 22346888876 4678
Q ss_pred Eecccccccccc
Q psy2760 289 LDELSIHDFNKH 300 (333)
Q Consensus 289 iViDe~H~~~~~ 300 (333)
+|+||+|.+.+.
T Consensus 274 lViDEad~ml~~ 285 (518)
T PLN00206 274 LVLDEVDCMLER 285 (518)
T ss_pred EEeecHHHHhhc
Confidence 999999987654
No 20
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=169.80 Aligned_cols=138 Identities=20% Similarity=0.237 Sum_probs=112.8
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--------cCCCeEEEEc
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--------NHKTRTIYTS 244 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l--------~~g~ral~l~ 244 (333)
|++.+..+++.. .. .|++.|.+|++.+.+|+|+|+.||||||||+++++|++..+ ..+..+|||+
T Consensus 8 l~~~v~~~~~~~-~~------~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIs 80 (814)
T COG1201 8 LDPRVREWFKRK-FT------SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYIS 80 (814)
T ss_pred cCHHHHHHHHHh-cC------CCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeC
Confidence 566777776654 33 79999999999999999999999999999999999998543 2346899999
Q ss_pred ccHHHHHHHHHHHHHhcC----CcEEEeCCCCCCCCc-------ceEEecc-----------------CcceEecccccc
Q psy2760 245 PIKALSNQKYRDFRETFQ----DVGLIDDLPPVFPDV-------EKLLEDL-----------------NIGGLDELSIHD 296 (333)
Q Consensus 245 PtraLa~Q~~~~l~~~f~----~vglltGd~~~~~~a-------~ili~t~-----------------~i~liViDe~H~ 296 (333)
|.|||.+++.+++..... .+.+.|||++...+. .+++.|+ ++-.+|+||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 999999999999866432 288999998764332 4788776 788999999999
Q ss_pred ccccCcCcccccchhhhhhhe
Q psy2760 297 FNKHLKFWKPKVQLDDLFDWT 317 (333)
Q Consensus 297 ~~~~~R~~~~~~~l~~l~~l~ 317 (333)
+....||..-.+++.++..+.
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~ 181 (814)
T COG1201 161 LAESKRGVQLALSLERLRELA 181 (814)
T ss_pred hhccccchhhhhhHHHHHhhC
Confidence 999999999888666665443
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.67 E-value=2e-16 Score=164.05 Aligned_cols=124 Identities=15% Similarity=-0.005 Sum_probs=100.4
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----------CCCeEE
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----------HKTRTI 241 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----------~g~ral 241 (333)
+|++.+...+...++. .|+++|.++|+.++.|+|++++||||||||++|++|++..+. .+.++|
T Consensus 15 ~l~~~l~~~L~~~g~~------~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 15 DLHPALLAGLESAGFT------RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4778888877776666 899999999999999999999999999999999999986542 146899
Q ss_pred EEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCC-------CcceEEecc----------------CcceEecccc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFP-------DVEKLLEDL----------------NIGGLDELSI 294 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~-------~a~ili~t~----------------~i~liViDe~ 294 (333)
|++||++|+.|+++.+.+.... ++.++|+..... ...++|.|+ .+.++|+||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999998775443 677888876432 246888885 3456899999
Q ss_pred ccccccC
Q psy2760 295 HDFNKHL 301 (333)
Q Consensus 295 H~~~~~~ 301 (333)
|.+.+.+
T Consensus 169 h~lld~g 175 (572)
T PRK04537 169 DRMFDLG 175 (572)
T ss_pred HHHhhcc
Confidence 9876543
No 22
>PTZ00110 helicase; Provisional
Probab=99.67 E-value=3.3e-16 Score=161.57 Aligned_cols=128 Identities=13% Similarity=0.000 Sum_probs=100.1
Q ss_pred cchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--------cCC
Q psy2760 166 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--------NHK 237 (333)
Q Consensus 166 ~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l--------~~g 237 (333)
.|.. .++++.+.+.++..++. .|+++|.++++.++.|++++++||||||||++|++|++..+ ..+
T Consensus 131 ~f~~-~~l~~~l~~~l~~~g~~------~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~g 203 (545)
T PTZ00110 131 SFEY-TSFPDYILKSLKNAGFT------EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDG 203 (545)
T ss_pred CHhh-cCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCC
Confidence 4443 35777787777666665 89999999999999999999999999999999999987543 136
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEec
Q psy2760 238 TRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDE 291 (333)
Q Consensus 238 ~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liVi 291 (333)
.++||++|||+||.|+.+.+++.... +..+.|+.... ....++|+|+ .+.++|+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 78999999999999999998774332 45566765532 2346888886 4678999
Q ss_pred ccccccccc
Q psy2760 292 LSIHDFNKH 300 (333)
Q Consensus 292 De~H~~~~~ 300 (333)
||+|.+.+.
T Consensus 284 DEAd~mld~ 292 (545)
T PTZ00110 284 DEADRMLDM 292 (545)
T ss_pred ehHHhhhhc
Confidence 999987654
No 23
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.67 E-value=2.9e-16 Score=135.32 Aligned_cols=128 Identities=17% Similarity=0.185 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeC
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETFQD----VGLIDD 269 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~PtraLa~Q~~~~l~~~f~~----vglltG 269 (333)
+++|.++++.+.+|+++++.||||+|||+++..+++..+..+ .+++|++|+++|++|+++.+++.+.. +..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999998766543 49999999999999999999998774 677888
Q ss_pred CCCCC--------CCcceEEecc---------------CcceEeccccccccccCcCcccccchhh------hhhheecc
Q psy2760 270 LPPVF--------PDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQLDD------LFDWTMAS 320 (333)
Q Consensus 270 d~~~~--------~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~l~~------l~~l~~~~ 320 (333)
+.... .+..+++.|+ .+.++|+||+|.+....++..... +.+ ..+.+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~-i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKS-ILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHH-HHHHSHTTTTSEEEEEE
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHH-HHHHhcCCCCCcEEEEe
Confidence 77633 3467888876 378999999999987542222211 111 25677888
Q ss_pred Ccch
Q psy2760 321 DATT 324 (333)
Q Consensus 321 d~~~ 324 (333)
++..
T Consensus 160 AT~~ 163 (169)
T PF00270_consen 160 ATLP 163 (169)
T ss_dssp SSST
T ss_pred eCCC
Confidence 7766
No 24
>KOG0952|consensus
Probab=99.66 E-value=7.6e-17 Score=170.87 Aligned_cols=128 Identities=17% Similarity=0.255 Sum_probs=103.6
Q ss_pred CCC-CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhc----------CCCeEEEEcccHHHHHHHHHHHH
Q psy2760 191 WPF-ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQN----------HKTRTIYTSPIKALSNQKYRDFR 258 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~----------~g~ral~l~PtraLa~Q~~~~l~ 258 (333)
|+| .|+.+|..+|+.+ .++.|.+||||||||||.+|+++|++.+. .+.+++||+|++|||.++++.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 456 8999999999997 88899999999999999999999997664 56899999999999999999999
Q ss_pred HhcCC----cEEEeCCCCCCCCcceEEeccCcceEeccccccccccCcCcccccchhhhhhheeccCcch
Q psy2760 259 ETFQD----VGLIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATT 324 (333)
Q Consensus 259 ~~f~~----vglltGd~~~~~~a~ili~t~~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~~~d~~~ 324 (333)
++|.. |.-+|||.+..... ++. ..|++.+|++|+..+|.|....++..+++|+++|-++-
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~---tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHl 249 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IAD---TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHL 249 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHh---cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehh
Confidence 99984 67799998865422 121 22346777777777777777777777777777766553
No 25
>PTZ00424 helicase 45; Provisional
Probab=99.66 E-value=7.6e-16 Score=151.46 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=96.4
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+...+...++. .|+++|.+|++.+..|++++++||||||||++|.++++..+. .+.++||++||++
T Consensus 34 ~l~~~~~~~l~~~~~~------~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 107 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFE------KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRE 107 (401)
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHH
Confidence 4666666655444444 799999999999999999999999999999999999987654 4678999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEecccccccccc
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~ 300 (333)
|+.|+.+.+...... ++.+.|+.... ....+++.|+ ++.++|+||+|.+...
T Consensus 108 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 108 LAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 999999988775432 45566665421 2246788876 5688999999987654
No 26
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.65 E-value=4.3e-16 Score=168.59 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=100.7
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh---------cCCCeEEEE
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---------NHKTRTIYT 243 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---------~~g~ral~l 243 (333)
+++.+.++++. ++. .|+++|++|++.+.+|+|++++||||||||++|.+|++..+ ..+.+++|+
T Consensus 18 l~~~v~~~~~~-~~~------~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyI 90 (876)
T PRK13767 18 LRPYVREWFKE-KFG------TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYV 90 (876)
T ss_pred cCHHHHHHHHH-ccC------CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEE
Confidence 56666666544 222 59999999999999999999999999999999999998543 235679999
Q ss_pred cccHHHHHHHHHHHHHh-------c---C----C--cEEEeCCCCCCC-------CcceEEecc----------------
Q psy2760 244 SPIKALSNQKYRDFRET-------F---Q----D--VGLIDDLPPVFP-------DVEKLLEDL---------------- 284 (333)
Q Consensus 244 ~PtraLa~Q~~~~l~~~-------f---~----~--vglltGd~~~~~-------~a~ili~t~---------------- 284 (333)
+|||||++|+++++.+. + + + +++.+||..... ...++++|+
T Consensus 91 sPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l 170 (876)
T PRK13767 91 SPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKL 170 (876)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHH
Confidence 99999999999876531 1 1 2 577899976432 235777775
Q ss_pred -CcceEeccccccccccCcCccccc
Q psy2760 285 -NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 285 -~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
++.++|+||+|.+.+..||+....
T Consensus 171 ~~l~~VVIDE~H~l~~~~RG~~l~~ 195 (876)
T PRK13767 171 RTVKWVIVDEIHSLAENKRGVHLSL 195 (876)
T ss_pred hcCCEEEEechhhhccCccHHHHHH
Confidence 467899999999998888876554
No 27
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.62 E-value=3.8e-15 Score=132.96 Aligned_cols=131 Identities=15% Similarity=-0.009 Sum_probs=97.4
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-----CCCeEEEEcccHHHHHHHHHHHHHhcC--C--c
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-----HKTRTIYTSPIKALSNQKYRDFRETFQ--D--V 264 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-----~g~ral~l~PtraLa~Q~~~~l~~~f~--~--v 264 (333)
.|+++|+++++.+..|+++++++|||+|||+++.++++..+. .+.+++|++|+++|+.|+.+.+++... + +
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceE
Confidence 689999999999999999999999999999999998875442 457899999999999999998877543 2 5
Q ss_pred EEEeCCCCCCC-------CcceEEecc---------------CcceEeccccccccccCcCccccc---chhhhhhheec
Q psy2760 265 GLIDDLPPVFP-------DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKV---QLDDLFDWTMA 319 (333)
Q Consensus 265 glltGd~~~~~-------~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~---~l~~l~~l~~~ 319 (333)
+.++|+..... +..++++|+ ++.++++||+|.+.....+-.... .+..-..++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLF 180 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEE
Confidence 77788766421 446888884 468899999998874432211111 11123446777
Q ss_pred cCcch
Q psy2760 320 SDATT 324 (333)
Q Consensus 320 ~d~~~ 324 (333)
|++.+
T Consensus 181 SAT~~ 185 (203)
T cd00268 181 SATMP 185 (203)
T ss_pred eccCC
Confidence 77655
No 28
>KOG0338|consensus
Probab=99.62 E-value=5.4e-16 Score=154.77 Aligned_cols=124 Identities=18% Similarity=0.104 Sum_probs=99.6
Q ss_pred hccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh------cCCCeEEEE
Q psy2760 170 MLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTRTIYT 243 (333)
Q Consensus 170 ~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l------~~g~ral~l 243 (333)
..+||.++...+..+|+. .|+|+|..+||..+-|++++.||.||||||.+|.+|++..+ ....|+|++
T Consensus 185 ~mNLSRPlLka~~~lGy~------~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 185 SMNLSRPLLKACSTLGYK------KPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hcccchHHHHHHHhcCCC------CCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 345677777766666655 89999999999999999999999999999999999999543 234789999
Q ss_pred cccHHHHHHHHHHHHHhc--CC--cEEEeCCCCCCCC-------cceEEecc----------------CcceEecccccc
Q psy2760 244 SPIKALSNQKYRDFRETF--QD--VGLIDDLPPVFPD-------VEKLLEDL----------------NIGGLDELSIHD 296 (333)
Q Consensus 244 ~PtraLa~Q~~~~l~~~f--~~--vglltGd~~~~~~-------a~ili~t~----------------~i~liViDe~H~ 296 (333)
+|||+|+-|++...++.. .+ +|+..||+....| -.++|+|+ +|..+|.||+..
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 999999999998877643 33 8999999987654 25788887 567777888775
Q ss_pred ccc
Q psy2760 297 FNK 299 (333)
Q Consensus 297 ~~~ 299 (333)
.-.
T Consensus 339 MLe 341 (691)
T KOG0338|consen 339 MLE 341 (691)
T ss_pred HHH
Confidence 543
No 29
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.61 E-value=4e-15 Score=155.90 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=98.4
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
+|++.+...+...|+. .|+++|.++++.++.|++++++||||||||++|.+|++..+. .+.++||++|||+
T Consensus 12 ~L~~~ll~al~~~G~~------~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 12 GLKAPILEALNDLGYE------KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 5777887777666665 899999999999999999999999999999999999986553 3568999999999
Q ss_pred HHHHHHHHHHHhcC---C--cEEEeCCCCCC-------CCcceEEecc---------------CcceEecccccccccc
Q psy2760 249 LSNQKYRDFRETFQ---D--VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 249 La~Q~~~~l~~~f~---~--vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~ 300 (333)
||.|+++.+..... + +..++|+.+.. ....++|.|+ ++.++|+||+|.+...
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999988766432 2 55567776543 2346888886 4677999999977544
No 30
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.60 E-value=4.3e-15 Score=156.91 Aligned_cols=139 Identities=19% Similarity=0.126 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHHHHHHc---CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEE
Q psy2760 192 PFELDVFQKQAIIKLEE---HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLI 267 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~---g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgll 267 (333)
++.|++.|++|+..+.. ++++++.|+||||||.+|+.++...+..|.++++++||++|+.|++++|++.|+. +.++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 45799999999999865 4789999999999999999988888888999999999999999999999998875 8889
Q ss_pred eCCCCCC-----------CCcceEEecc--------CcceEeccccccccccC-cCccc-------ccchhhhhhheecc
Q psy2760 268 DDLPPVF-----------PDVEKLLEDL--------NIGGLDELSIHDFNKHL-KFWKP-------KVQLDDLFDWTMAS 320 (333)
Q Consensus 268 tGd~~~~-----------~~a~ili~t~--------~i~liViDe~H~~~~~~-R~~~~-------~~~l~~l~~l~~~~ 320 (333)
+|+.+.. ....++|.|. ++.++|+||.|...-.. ++..+ .++......++++|
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~S 301 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGS 301 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEc
Confidence 9887642 2346888875 68999999999775332 22222 12234457899999
Q ss_pred Ccchhhhhhc
Q psy2760 321 DATTLEIFTY 330 (333)
Q Consensus 321 d~~~~e~~~~ 330 (333)
+++++|.|..
T Consensus 302 ATps~~s~~~ 311 (679)
T PRK05580 302 ATPSLESLAN 311 (679)
T ss_pred CCCCHHHHHH
Confidence 9999999865
No 31
>KOG0331|consensus
Probab=99.58 E-value=4.1e-15 Score=150.77 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=101.1
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC---------CCeEE
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH---------KTRTI 241 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~---------g~ral 241 (333)
.+|+.......+..++. .|+|+|.++++.++.|++++..|.||||||++|++|++.++.. ++++|
T Consensus 96 ~~ls~~~~~~lk~~g~~------~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFE------KPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred ccccHHHHHHHHhcCCC------CCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 34555555555555555 7999999999999999999999999999999999999866543 78999
Q ss_pred EEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCCCc-------ceEEecc---------------CcceEeccccc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFPDV-------EKLLEDL---------------NIGGLDELSIH 295 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~~a-------~ili~t~---------------~i~liViDe~H 295 (333)
+++|||+||.|+.+.+.+.... ...++|+.+..+|. .++|+|+ .+.++|+||+.
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 9999999999999999884443 45678888877653 5888887 57889999999
Q ss_pred cccccC
Q psy2760 296 DFNKHL 301 (333)
Q Consensus 296 ~~~~~~ 301 (333)
...+++
T Consensus 250 rMldmG 255 (519)
T KOG0331|consen 250 RMLDMG 255 (519)
T ss_pred hhhccc
Confidence 776664
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=1.1e-14 Score=147.64 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=90.3
Q ss_pred cCCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEe
Q psy2760 190 TWPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLID 268 (333)
Q Consensus 190 ~~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgllt 268 (333)
.|+| .|+|+|.+|++.++.|+++++++|||||||++|.+|++. .+..+||++||++|+.|+.+.++...-.+..++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~ 82 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFLN 82 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3555 899999999999999999999999999999999999864 356799999999999999999976333467777
Q ss_pred CCCCCC-----------CCcceEEecc-----------------CcceEeccccccccccCcCccc
Q psy2760 269 DLPPVF-----------PDVEKLLEDL-----------------NIGGLDELSIHDFNKHLKFWKP 306 (333)
Q Consensus 269 Gd~~~~-----------~~a~ili~t~-----------------~i~liViDe~H~~~~~~R~~~~ 306 (333)
|+.... .+..+++.|+ ++.++|+||+|.+...+..++.
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 765532 2235665554 4678999999998766554444
No 33
>KOG0330|consensus
Probab=99.57 E-value=1.9e-15 Score=146.95 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=92.2
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCe
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTR 239 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~r 239 (333)
.+..|++ .++++.+.+.++..++. .|+++|+++||.+++|++|++.|.||||||.+|.+||++++- +..+
T Consensus 59 ~~~sf~d-Lgv~~~L~~ac~~l~~~------~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~ 131 (476)
T KOG0330|consen 59 SFKSFAD-LGVHPELLEACQELGWK------KPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFF 131 (476)
T ss_pred hhcchhh-cCcCHHHHHHHHHhCcC------CCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCce
Confidence 3444444 46788888888887766 899999999999999999999999999999999999997763 3468
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCCCc-------ceEEecc
Q psy2760 240 TIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFPDV-------EKLLEDL 284 (333)
Q Consensus 240 al~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~~a-------~ili~t~ 284 (333)
+++++|||+||.|+.+.|...-+. +..+.||.....++ .++|+|+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTP 187 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATP 187 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCc
Confidence 999999999999999999774343 56678887765433 3556655
No 34
>KOG0345|consensus
Probab=99.56 E-value=1.9e-14 Score=142.71 Aligned_cols=124 Identities=16% Similarity=0.049 Sum_probs=100.1
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--c-----CC-CeEEEE
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--N-----HK-TRTIYT 243 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l--~-----~g-~ral~l 243 (333)
+|++++...+...|+. .+||.|..+||.++.+++|++-|+||||||++|++|++..+ + ++ ..+++|
T Consensus 12 ~L~~~l~~~l~~~GF~------~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalII 85 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFE------KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALII 85 (567)
T ss_pred CccHHHHHHHHhcCCc------ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEe
Confidence 4788888877766666 69999999999999999999999999999999999998544 1 12 469999
Q ss_pred cccHHHHHHHHHHHHHh---cCC--cEEEeCCCCCCC--------CcceEEecc-----------------CcceEeccc
Q psy2760 244 SPIKALSNQKYRDFRET---FQD--VGLIDDLPPVFP--------DVEKLLEDL-----------------NIGGLDELS 293 (333)
Q Consensus 244 ~PtraLa~Q~~~~l~~~---f~~--vglltGd~~~~~--------~a~ili~t~-----------------~i~liViDe 293 (333)
+|||+|+.|+....... +.+ +.+++||.+... ..+++|+|+ ++.++|+||
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDE 165 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDE 165 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecc
Confidence 99999999999776543 333 677888876542 346889887 467899999
Q ss_pred cccccccC
Q psy2760 294 IHDFNKHL 301 (333)
Q Consensus 294 ~H~~~~~~ 301 (333)
+..+.+.+
T Consensus 166 ADrLldmg 173 (567)
T KOG0345|consen 166 ADRLLDMG 173 (567)
T ss_pred hHhHhccc
Confidence 99888775
No 35
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.1e-14 Score=147.24 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=100.9
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--CC-C-e-EEEEccc
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HK-T-R-TIYTSPI 246 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~--~g-~-r-al~l~Pt 246 (333)
++++.+...+...++. .|+|+|.++||.++.|+++++.|+||||||++|.+|++..+. .. . . +|+++||
T Consensus 35 ~l~~~ll~~l~~~gf~------~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 35 GLSPELLQALKDLGFE------EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 3677777777666666 899999999999999999999999999999999999997654 22 1 2 9999999
Q ss_pred HHHHHHHHHHHHHhcC---C--cEEEeCCCCCCC-------CcceEEecc---------------CcceEeccccccccc
Q psy2760 247 KALSNQKYRDFRETFQ---D--VGLIDDLPPVFP-------DVEKLLEDL---------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 247 raLa~Q~~~~l~~~f~---~--vglltGd~~~~~-------~a~ili~t~---------------~i~liViDe~H~~~~ 299 (333)
|+||.|+++.+..... . +..++|+.+... ..+++|+|+ .+.++|+||+..+.+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 9999999999877433 2 567889887543 256899987 578899999998877
Q ss_pred c
Q psy2760 300 H 300 (333)
Q Consensus 300 ~ 300 (333)
.
T Consensus 189 ~ 189 (513)
T COG0513 189 M 189 (513)
T ss_pred C
Confidence 7
No 36
>KOG0348|consensus
Probab=99.55 E-value=1.7e-14 Score=144.81 Aligned_cols=126 Identities=20% Similarity=0.154 Sum_probs=97.4
Q ss_pred hccCChhhhhhhh-ccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh---------cCCCe
Q psy2760 170 MLDVSKPVLDFDA-KVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---------NHKTR 239 (333)
Q Consensus 170 ~~~L~~~l~~~~~-~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---------~~g~r 239 (333)
..+|++-+.+-++ ..++. .|+.+|+++||.+++|++++|.++||||||++|++|+.+.+ ..|.-
T Consensus 140 ~LGL~~~lv~~L~~~m~i~------~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKIS------APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred hcCCCHHHHHHHHHHhccC------ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 3567777776544 33344 79999999999999999999999999999999999998654 35788
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCC-----cEEEeCCCCCCC-------CcceEEecc----------------CcceEec
Q psy2760 240 TIYTSPIKALSNQKYRDFRETFQD-----VGLIDDLPPVFP-------DVEKLLEDL----------------NIGGLDE 291 (333)
Q Consensus 240 al~l~PtraLa~Q~~~~l~~~f~~-----vglltGd~~~~~-------~a~ili~t~----------------~i~liVi 291 (333)
+++++|||+||.|+|+.++++... -|.+.||-+... .-.++|.|+ .+-.+|.
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999999999999999887765 266777655422 235788877 3455677
Q ss_pred cccccccccC
Q psy2760 292 LSIHDFNKHL 301 (333)
Q Consensus 292 De~H~~~~~~ 301 (333)
||...+.+.+
T Consensus 294 DEaDrlleLG 303 (708)
T KOG0348|consen 294 DEADRLLELG 303 (708)
T ss_pred cchhHHHhcc
Confidence 7777665543
No 37
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=146.42 Aligned_cols=138 Identities=25% Similarity=0.328 Sum_probs=114.3
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEcccHH
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~Ptra 248 (333)
.+++++++..++..|+. .+.|.|.-|+.. ++.|+|.+|.++|+||||++..+|-+ ..+..|.+-+|++|..|
T Consensus 199 Ldipe~fk~~lk~~G~~------eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVA 272 (830)
T COG1202 199 LDIPEKFKRMLKREGIE------ELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVA 272 (830)
T ss_pred cCCcHHHHHHHHhcCcc------eecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHH
Confidence 46788899999888888 899999999998 79999999999999999999999766 55667999999999999
Q ss_pred HHHHHHHHHHHhcCCcE----EEeCCC-----------CCCCCcceEEecc--------------CcceEeccccccccc
Q psy2760 249 LSNQKYRDFRETFQDVG----LIDDLP-----------PVFPDVEKLLEDL--------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 249 La~Q~~~~l~~~f~~vg----lltGd~-----------~~~~~a~ili~t~--------------~i~liViDe~H~~~~ 299 (333)
||||.+++|++++++.| +..|-. ...+.++++|.|. +++.+|+||+|++.+
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccc
Confidence 99999999999998633 333322 2234578899876 789999999999999
Q ss_pred cCcCcccccchhhhhh
Q psy2760 300 HLKFWKPKVQLDDLFD 315 (333)
Q Consensus 300 ~~R~~~~~~~l~~l~~ 315 (333)
..||-+-.- ++-.++
T Consensus 353 eERG~RLdG-LI~RLr 367 (830)
T COG1202 353 EERGPRLDG-LIGRLR 367 (830)
T ss_pred hhcccchhh-HHHHHH
Confidence 999988665 444444
No 38
>KOG0347|consensus
Probab=99.54 E-value=2.3e-15 Score=151.35 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=97.7
Q ss_pred CCCCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHHHHh---
Q psy2760 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQ--- 234 (333)
Q Consensus 159 ~~~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g-~~vlv~apTGSGKTl~~~l~il~~l--- 234 (333)
......+.|..- .|+..+...+...|+. .|+++|.-+++++..| .++++.|.||||||++|.+||+..+
T Consensus 175 ~~~~DvsAW~~l-~lp~~iL~aL~~~gFs------~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~ 247 (731)
T KOG0347|consen 175 SSKVDVSAWKNL-FLPMEILRALSNLGFS------RPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLES 247 (731)
T ss_pred ccccChHHHhcC-CCCHHHHHHHHhcCCC------CCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhc
Confidence 445688899987 8999999888777776 8999999999999888 7999999999999999999998521
Q ss_pred -----------cCCCe--EEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCCCc-------ceEEecc
Q psy2760 235 -----------NHKTR--TIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFPDV-------EKLLEDL 284 (333)
Q Consensus 235 -----------~~g~r--al~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~~a-------~ili~t~ 284 (333)
..+.+ +|+++|||+||.|+.+++...... +..++||+....|. .++|+|+
T Consensus 248 s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATP 321 (731)
T KOG0347|consen 248 SDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATP 321 (731)
T ss_pred cchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecc
Confidence 23445 999999999999999999876553 67789998876544 4666665
No 39
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.54 E-value=1.8e-14 Score=155.20 Aligned_cols=108 Identities=25% Similarity=0.228 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcCC------cE
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD------VG 265 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~~f~~------vg 265 (333)
.|++||.+|+..+.+|+|++|++|||||||++|++||+..+. ...++||++||+|||+.+.++|++.... ++
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred cccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceee
Confidence 599999999999999999999999999999999999996653 3457899999999999999998775432 57
Q ss_pred EEeCCCCCCCC-------cceEEecc-------------------CcceEeccccccccccC
Q psy2760 266 LIDDLPPVFPD-------VEKLLEDL-------------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 266 lltGd~~~~~~-------a~ili~t~-------------------~i~liViDe~H~~~~~~ 301 (333)
.++||+..... .++++.++ ++-++|+||+|.+....
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 79999886543 25666654 67889999999886553
No 40
>KOG0343|consensus
Probab=99.51 E-value=1.6e-14 Score=145.41 Aligned_cols=123 Identities=17% Similarity=0.118 Sum_probs=98.3
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-------cCCCeEEEEcc
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NHKTRTIYTSP 245 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-------~~g~ral~l~P 245 (333)
|+.++...++...+. .++.+|+++|+..++|++|+..|.||||||++|++|++.++ ..|..+|+|+|
T Consensus 76 ls~~t~kgLke~~fv------~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISP 149 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFV------KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISP 149 (758)
T ss_pred CchHHHHhHhhcCCc------cHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecc
Confidence 344444444443333 79999999999999999999999999999999999999554 35788999999
Q ss_pred cHHHHHHHHHHHHHhcCC----cEEEeCCCCCC------CCcceEEecc----------------CcceEeccccccccc
Q psy2760 246 IKALSNQKYRDFRETFQD----VGLIDDLPPVF------PDVEKLLEDL----------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~~----vglltGd~~~~------~~a~ili~t~----------------~i~liViDe~H~~~~ 299 (333)
||+||.|++..+.+.-.. .|++.||.... .+..++|||+ ++-++|.||+..+-+
T Consensus 150 TRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 150 TRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD 229 (758)
T ss_pred hHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH
Confidence 999999999999774332 79999987653 2357899987 577788899988776
Q ss_pred cC
Q psy2760 300 HL 301 (333)
Q Consensus 300 ~~ 301 (333)
++
T Consensus 230 MG 231 (758)
T KOG0343|consen 230 MG 231 (758)
T ss_pred Hh
Confidence 64
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.50 E-value=1.3e-13 Score=143.31 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=89.2
Q ss_pred cCCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEe
Q psy2760 190 TWPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLID 268 (333)
Q Consensus 190 ~~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgllt 268 (333)
.|+| .|++.|.++++.++.|+++++++|||+|||++|.+|++. .+..++|++|+++|+.|+.+.++...-.+..++
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~ 84 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLN 84 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3666 799999999999999999999999999999999998864 355789999999999999999987433467777
Q ss_pred CCCCCC-----------CCcceEEecc---------------CcceEeccccccccccCcCcc
Q psy2760 269 DLPPVF-----------PDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWK 305 (333)
Q Consensus 269 Gd~~~~-----------~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~ 305 (333)
|+.... ....+++.|+ ++.++|+||+|.+...+..++
T Consensus 85 s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 85 STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 765432 1234555543 578899999999876544443
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.49 E-value=1.9e-13 Score=142.74 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=88.6
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltG 269 (333)
|+| .|+++|.++++.+..|+++++++|||+|||++|.+|++.. +..++|++|+++|+.|+.+.++...-.+..+.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s 97 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVAAACLNS 97 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 566 7999999999999999999999999999999999998743 457999999999999999999874333555655
Q ss_pred CCCCC-----------CCcceEEecc---------------CcceEeccccccccccCcCcccc
Q psy2760 270 LPPVF-----------PDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 270 d~~~~-----------~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~ 307 (333)
+.... .+..+++.++ ++.++|+||+|.+...++.++..
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~ 161 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPE 161 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHH
Confidence 54321 1224555443 47889999999988776665543
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=99.48 E-value=2e-13 Score=151.29 Aligned_cols=115 Identities=13% Similarity=0.012 Sum_probs=89.8
Q ss_pred ccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----c
Q psy2760 189 HTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----V 264 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----v 264 (333)
..+++.|+++|+++++.++.|++++++||||||||.+++.++.....++.+++|++|||+||.|+++++++.... +
T Consensus 75 ~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 75 KKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred HhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 345668999999999999999999999999999997555444444456889999999999999999999886543 4
Q ss_pred EEEeCCCCC-------------CCCcceEEecc-------------CcceEeccccccccccCcC
Q psy2760 265 GLIDDLPPV-------------FPDVEKLLEDL-------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 265 glltGd~~~-------------~~~a~ili~t~-------------~i~liViDe~H~~~~~~R~ 303 (333)
..+.|+... .....++|+|+ .+.++|+||+|.+...+|.
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccc
Confidence 445554321 12357888886 3788999999998776554
No 44
>KOG0342|consensus
Probab=99.47 E-value=6.4e-14 Score=139.52 Aligned_cols=153 Identities=17% Similarity=0.127 Sum_probs=112.9
Q ss_pred hhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-------cCCCeEE
Q psy2760 169 EMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NHKTRTI 241 (333)
Q Consensus 169 ~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-------~~g~ral 241 (333)
+...|++.+...++..|+. .++++|..+++.++.|+++++.|.||+|||++|++|++..+ +.+..++
T Consensus 85 ~~~~LS~~t~kAi~~~GF~------~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 85 EEGSLSPLTLKAIKEMGFE------TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hccccCHHHHHHHHhcCcc------chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 3344566665555555555 79999999999999999999999999999999999988443 4678899
Q ss_pred EEcccHHHHHHHHHHHHHhcC-----CcEEEeCCCCCCCC-------cceEEecc----------------CcceEeccc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQ-----DVGLIDDLPPVFPD-------VEKLLEDL----------------NIGGLDELS 293 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~-----~vglltGd~~~~~~-------a~ili~t~----------------~i~liViDe 293 (333)
+++|||+||.|++.+.++... .++++.||.....+ ..++|+|+ +.-++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 999999999999998877653 28999999876433 35788887 344688999
Q ss_pred cccccccCcCccccc-ch----hhhhhheeccCcchhhhhh
Q psy2760 294 IHDFNKHLKFWKPKV-QL----DDLFDWTMASDATTLEIFT 329 (333)
Q Consensus 294 ~H~~~~~~R~~~~~~-~l----~~l~~l~~~~d~~~~e~~~ 329 (333)
+..+.+.+ ++... +. =+..+-++.|+.++-|+.+
T Consensus 239 ADrlLd~G--F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~ 277 (543)
T KOG0342|consen 239 ADRLLDIG--FEEDVEQIIKILPKQRQTLLFSATQPSKVKD 277 (543)
T ss_pred chhhhhcc--cHHHHHHHHHhccccceeeEeeCCCcHHHHH
Confidence 98876654 33221 11 1234456677776666543
No 45
>KOG0340|consensus
Probab=99.46 E-value=1.2e-13 Score=133.14 Aligned_cols=99 Identities=19% Similarity=0.133 Sum_probs=85.4
Q ss_pred hccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEccc
Q psy2760 170 MLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSPI 246 (333)
Q Consensus 170 ~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~Pt 246 (333)
..+|++|+.+-++..++. .++|+|..+||.++.|++++.||.||||||.+|.+||+..+.. |.=++++.||
T Consensus 11 ~LGl~~Wlve~l~~l~i~------~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIK------KPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred hcCccHHHHHHHHHhcCC------CCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 357888999988888888 8999999999999999999999999999999999999987754 4568999999
Q ss_pred HHHHHHHHHHHHHhcCC----cEEEeCCCCCC
Q psy2760 247 KALSNQKYRDFRETFQD----VGLIDDLPPVF 274 (333)
Q Consensus 247 raLa~Q~~~~l~~~f~~----vglltGd~~~~ 274 (333)
|+||-|+.++|...-.. +.++.|+...-
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i 116 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMI 116 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHh
Confidence 99999999999764332 67788876643
No 46
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.45 E-value=5.8e-13 Score=136.19 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHHhcC----CcEEE
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRETFQ----DVGLI 267 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa~Q~~~~l~~~f~----~vgll 267 (333)
+.|+++|.+|+..+..+++.++++|||+|||+++...+...... ..++|+++||++|+.|+.++|++... .++.+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999889999999999999999876544333333 34999999999999999999987432 13344
Q ss_pred eCCCCCCCCcceEEecc------------CcceEecccccccccc
Q psy2760 268 DDLPPVFPDVEKLLEDL------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 268 tGd~~~~~~a~ili~t~------------~i~liViDe~H~~~~~ 300 (333)
.|+........++|+|+ ++.++|+||+|.+...
T Consensus 193 ~~g~~~~~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~ 237 (501)
T PHA02558 193 YSGTAKDTDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK 237 (501)
T ss_pred ecCcccCCCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch
Confidence 45544444567888874 5688999999998653
No 47
>KOG0350|consensus
Probab=99.44 E-value=2e-13 Score=136.35 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHH---------HcCCcEEEEcCCCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKL---------EEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l---------~~g~~vlv~apTGSGKTl~~~l~il~~l~~----g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.+.|+|..+++-+ ..+++++|.||||||||++|.+||.+.+.. .-|+++|+|||+|+.|+++.|.+.
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 7889999998885 246899999999999999999999987754 368999999999999999999887
Q ss_pred cCC----cEEEeCCCCCCC------------CcceEEecc----------------CcceEeccccccccccC-cCcccc
Q psy2760 261 FQD----VGLIDDLPPVFP------------DVEKLLEDL----------------NIGGLDELSIHDFNKHL-KFWKPK 307 (333)
Q Consensus 261 f~~----vglltGd~~~~~------------~a~ili~t~----------------~i~liViDe~H~~~~~~-R~~~~~ 307 (333)
..+ |+.++|..+... +..++|.|+ ++-++|+||+..+.+.. -+|-..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 765 566777655421 236888887 46778999998775543 235443
No 48
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.8e-13 Score=140.18 Aligned_cols=119 Identities=17% Similarity=0.072 Sum_probs=95.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCC-----------CCcceE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVF-----------PDVEKL 280 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~-----------~~a~il 280 (333)
++.||||||||++|+.++...+..|.+++|++|+++|+.|++++|++.|+. +.+++|+.+.. ....++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 478999999999998888777888999999999999999999999998875 88898877542 234677
Q ss_pred Eecc--------CcceEeccccccccccC-cCc-------ccccchhhhhhheeccCcchhhhhhcc
Q psy2760 281 LEDL--------NIGGLDELSIHDFNKHL-KFW-------KPKVQLDDLFDWTMASDATTLEIFTYN 331 (333)
Q Consensus 281 i~t~--------~i~liViDe~H~~~~~~-R~~-------~~~~~l~~l~~l~~~~d~~~~e~~~~~ 331 (333)
|.|. +++++|+||.|.+.-.. ++. +..++....+.++++|+++++|.|...
T Consensus 81 VGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 81 IGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred ECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 7764 78999999999875322 232 333444556889999999999998753
No 49
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.43 E-value=4.7e-13 Score=148.37 Aligned_cols=113 Identities=16% Similarity=0.051 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-------
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD------- 263 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~------- 263 (333)
..+.|+++|+.+++.++.|++++++||||||||+.++..+......+.+++|++|||+||.|+++.+++.+..
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~ 154 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVN 154 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceee
Confidence 3458999999999999999999999999999998443333333456889999999999999999999886542
Q ss_pred cEEEeCCCCCCC-----------CcceEEecc------------CcceEeccccccccccCcC
Q psy2760 264 VGLIDDLPPVFP-----------DVEKLLEDL------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 264 vglltGd~~~~~-----------~a~ili~t~------------~i~liViDe~H~~~~~~R~ 303 (333)
++.++|+.+... ...++|.|+ .+.++|+||+|.+...+|+
T Consensus 155 i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 155 IGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred eeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhcccc
Confidence 345678765421 246888876 3669999999999876553
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.42 E-value=7.2e-13 Score=144.21 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=88.0
Q ss_pred cCCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEe
Q psy2760 190 TWPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLID 268 (333)
Q Consensus 190 ~~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgllt 268 (333)
.|+| .|++.|.++|+.++.|+++++++|||+|||++|.+|++.. +..+|||+|+++|+.++...+....-....++
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~ 531 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIPAASLS 531 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4566 8999999999999999999999999999999999998743 46799999999999988877766333356666
Q ss_pred CCCCCC-------------CCcceEEecc--------------------CcceEeccccccccccCcCccc
Q psy2760 269 DLPPVF-------------PDVEKLLEDL--------------------NIGGLDELSIHDFNKHLKFWKP 306 (333)
Q Consensus 269 Gd~~~~-------------~~a~ili~t~--------------------~i~liViDe~H~~~~~~R~~~~ 306 (333)
|+.... ....+++.|+ .+.++|+||+|.+...+..++.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRp 602 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRP 602 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHH
Confidence 765421 2235666654 2567899999998776544443
No 51
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=3.5e-13 Score=139.39 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=112.3
Q ss_pred ccCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 189 HTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
+..||.||.-|++++..+..+ .+.++.|..|||||+++.++++.+...|.++..++||--||+|.++.+++.|+
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhh
Confidence 457999999999999997432 47899999999999999999999999999999999999999999999999888
Q ss_pred C----cEEEeCCCCC-----------CCCcceEEecc----------CcceEeccccccccccCcCcccccchhhhhhhe
Q psy2760 263 D----VGLIDDLPPV-----------FPDVEKLLEDL----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWT 317 (333)
Q Consensus 263 ~----vglltGd~~~-----------~~~a~ili~t~----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~ 317 (333)
+ |+++||...- +.+..++|.|+ +++++|+||-|.|+...|.--+...-. .-..+
T Consensus 337 ~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~-~Ph~L 415 (677)
T COG1200 337 PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQ-NPHVL 415 (677)
T ss_pred hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHHHHhCCC-CCcEE
Confidence 5 7889998764 34457888887 789999999999999987644433211 45677
Q ss_pred eccCcch
Q psy2760 318 MASDATT 324 (333)
Q Consensus 318 ~~~d~~~ 324 (333)
+++++|+
T Consensus 416 vMTATPI 422 (677)
T COG1200 416 VMTATPI 422 (677)
T ss_pred EEeCCCc
Confidence 7877764
No 52
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.40 E-value=1.3e-12 Score=128.17 Aligned_cols=70 Identities=24% Similarity=0.255 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCc--EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC------C--cEEE
Q psy2760 198 FQKQAIIKLEEHNH--VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ------D--VGLI 267 (333)
Q Consensus 198 ~Q~~ai~~l~~g~~--vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~------~--vgll 267 (333)
||.++++.+.++.+ ++++||||||||++|+++++. .+.+++|++|+++|++|+++++++.+. + +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 69999999977764 889999999999999999874 345789999999999999999988762 2 4556
Q ss_pred eCC
Q psy2760 268 DDL 270 (333)
Q Consensus 268 tGd 270 (333)
+|+
T Consensus 78 ~g~ 80 (357)
T TIGR03158 78 SKA 80 (357)
T ss_pred cCC
Confidence 775
No 53
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.40 E-value=8e-13 Score=139.47 Aligned_cols=139 Identities=18% Similarity=0.132 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHcC----CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEe
Q psy2760 194 ELDVFQKQAIIKLEEH----NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLID 268 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g----~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgllt 268 (333)
.+++-|..|+..+... ...++.+.||||||.+|+-+|...+..|+.+|+++|.++|..|+..+|+.+|+. +++++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 6899999999997433 788999999999999999999999999999999999999999999999999996 89999
Q ss_pred CCCCCC-----------CCcceEEecc--------CcceEecccccccc-ccCcCcccc-------cchhhhhhheeccC
Q psy2760 269 DLPPVF-----------PDVEKLLEDL--------NIGGLDELSIHDFN-KHLKFWKPK-------VQLDDLFDWTMASD 321 (333)
Q Consensus 269 Gd~~~~-----------~~a~ili~t~--------~i~liViDe~H~~~-~~~R~~~~~-------~~l~~l~~l~~~~d 321 (333)
++++.. .++++++.|- ++++||+||-|.-. ...+++++. ++-...+.++|+|+
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSA 357 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSA 357 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecC
Confidence 888753 3445666653 89999999999542 222344443 34466688999999
Q ss_pred cchhhhhhccc
Q psy2760 322 ATTLEIFTYNK 332 (333)
Q Consensus 322 ~~~~e~~~~~~ 332 (333)
+||+|.|++.+
T Consensus 358 TPSLES~~~~~ 368 (730)
T COG1198 358 TPSLESYANAE 368 (730)
T ss_pred CCCHHHHHhhh
Confidence 99999998864
No 54
>PRK14701 reverse gyrase; Provisional
Probab=99.40 E-value=1.2e-12 Score=148.43 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=91.0
Q ss_pred ccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----
Q psy2760 189 HTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----- 263 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----- 263 (333)
..++|.|+++|+++++.+++|+++++.||||||||+++..+.+....+|.++++++||++|+.|+++.++.....
T Consensus 74 ~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 74 KITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred HhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 345678999999999999999999999999999999766665555556789999999999999999999875432
Q ss_pred -cEEEeCCCCCCC-----------CcceEEecc-------------CcceEeccccccccccCc
Q psy2760 264 -VGLIDDLPPVFP-----------DVEKLLEDL-------------NIGGLDELSIHDFNKHLK 302 (333)
Q Consensus 264 -vglltGd~~~~~-----------~a~ili~t~-------------~i~liViDe~H~~~~~~R 302 (333)
+..++|+.+... ...+++.|+ ++.++++||+|.+...++
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccccc
Confidence 355778765431 246888876 367899999998875444
No 55
>KOG0335|consensus
Probab=99.37 E-value=6.1e-13 Score=133.43 Aligned_cols=109 Identities=17% Similarity=0.039 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-------------CCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-------------HKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-------------~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.++|+|+-+|+.+..|+++++||+||||||.+|++|++..+. ..+++++++|||+||.|++.+-++.
T Consensus 96 ~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh
Confidence 799999999999999999999999999999999999984431 1378999999999999999998774
Q ss_pred cCC----cEEEeCCCCCCCC-------cceEEecc---------------CcceEeccccccccc-cCc
Q psy2760 261 FQD----VGLIDDLPPVFPD-------VEKLLEDL---------------NIGGLDELSIHDFNK-HLK 302 (333)
Q Consensus 261 f~~----vglltGd~~~~~~-------a~ili~t~---------------~i~liViDe~H~~~~-~~R 302 (333)
... .+...|+.+...+ -.++++|+ ++.++|+||+....+ .+.
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF 244 (482)
T KOG0335|consen 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGF 244 (482)
T ss_pred cccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccc
Confidence 332 4556666544322 35777776 577899999997765 443
No 56
>KOG0346|consensus
Probab=99.36 E-value=9.1e-13 Score=130.06 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=93.5
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh---------cCCCeEE
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---------NHKTRTI 241 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---------~~g~ral 241 (333)
.+|.+.+......+|.. .|+-+|..||+.+++|++++..|.||||||.+|++|+++.+ ..+..++
T Consensus 24 ~gLD~RllkAi~~lG~e------kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 24 FGLDSRLLKAITKLGWE------KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hCCCHHHHHHHHHhCcC------CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 45667777777777777 89999999999999999999999999999999999998543 3467899
Q ss_pred EEcccHHHHHHHHHHHHHhcCC----c--EEEeCCCCCC-------CCcceEEecc----------------CcceEecc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQD----V--GLIDDLPPVF-------PDVEKLLEDL----------------NIGGLDEL 292 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~~----v--glltGd~~~~-------~~a~ili~t~----------------~i~liViD 292 (333)
+++|||+||+|++..+.+.-.. + .-++.+.+.. ..-.++|.|+ .+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 9999999999999887664321 1 1122222211 2235777776 46789999
Q ss_pred cccccccc
Q psy2760 293 SIHDFNKH 300 (333)
Q Consensus 293 e~H~~~~~ 300 (333)
|+..+-+-
T Consensus 178 EADLllsf 185 (569)
T KOG0346|consen 178 EADLLLSF 185 (569)
T ss_pred hhhhhhhc
Confidence 99876543
No 57
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.36 E-value=4.6e-12 Score=109.27 Aligned_cols=130 Identities=19% Similarity=0.111 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhcCC-----c
Q psy2760 193 FELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETFQD-----V 264 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g-~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~PtraLa~Q~~~~l~~~f~~-----v 264 (333)
..++++|.+++..+... +++++++|||+|||.++..+++.....+ .+++|++|+++++.|+..++.+.+.. .
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 37899999999999888 9999999999999999988888766554 78999999999999999999887643 3
Q ss_pred EEEeCCCC------CCCCc-ceEEecc---------------CcceEeccccccccccCcCcccccchhh----hhhhee
Q psy2760 265 GLIDDLPP------VFPDV-EKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQLDD----LFDWTM 318 (333)
Q Consensus 265 glltGd~~------~~~~a-~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~l~~----l~~l~~ 318 (333)
..+.|... ..... .+++.|+ .+.++|+||+|++....+...+.. +++ ....++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~-~~~~~~~~~~~v~ 165 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK-LLKLLPKNVQLLL 165 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH-HHHhCCccceEEE
Confidence 33444332 12222 6677663 345899999999986433333332 223 355677
Q ss_pred ccCcc
Q psy2760 319 ASDAT 323 (333)
Q Consensus 319 ~~d~~ 323 (333)
+++.+
T Consensus 166 ~saT~ 170 (201)
T smart00487 166 LSATP 170 (201)
T ss_pred EecCC
Confidence 77766
No 58
>KOG0333|consensus
Probab=99.33 E-value=3.8e-12 Score=127.90 Aligned_cols=130 Identities=15% Similarity=0.052 Sum_probs=104.8
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHH---------
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS--------- 233 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~--------- 233 (333)
+...|.+.. ++..+.......+.. .|+|+|++|++..++.+++++.|.||||||++|.+|++..
T Consensus 243 plrnwEE~~-~P~e~l~~I~~~~y~------eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~ 315 (673)
T KOG0333|consen 243 PLRNWEESG-FPLELLSVIKKPGYK------EPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR 315 (673)
T ss_pred cccChhhcC-CCHHHHHHHHhcCCC------CCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch
Confidence 788898865 898888888887777 8999999999999999999999999999999999998732
Q ss_pred ---hcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cEEEeCCCCCCCC-------cceEEecc--------------
Q psy2760 234 ---QNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLIDDLPPVFPD-------VEKLLEDL-------------- 284 (333)
Q Consensus 234 ---l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vglltGd~~~~~~-------a~ili~t~-------------- 284 (333)
...|+++++++|||+|++|+..+-.+ |+. +..+.|+.+...+ ..++++|+
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl 394 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVL 394 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHh
Confidence 13588999999999999999988766 442 4446677766543 46777777
Q ss_pred -CcceEecccccccccc
Q psy2760 285 -NIGGLDELSIHDFNKH 300 (333)
Q Consensus 285 -~i~liViDe~H~~~~~ 300 (333)
....+|.||+...-+.
T Consensus 395 ~qctyvvldeadrmiDm 411 (673)
T KOG0333|consen 395 NQCTYVVLDEADRMIDM 411 (673)
T ss_pred ccCceEeccchhhhhcc
Confidence 3566788888765544
No 59
>KOG0334|consensus
Probab=99.31 E-value=3.4e-12 Score=136.25 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=99.5
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--------
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------- 234 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-------- 234 (333)
+...|... +++..+....++++.. .++++|.+|||++..|++|++.|-||||||++|++|++.+.
T Consensus 363 pv~sW~q~-gl~~~il~tlkkl~y~------k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~ 435 (997)
T KOG0334|consen 363 PVTSWTQC-GLSSKILETLKKLGYE------KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE 435 (997)
T ss_pred ccchHhhC-CchHHHHHHHHHhcCC------CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh
Confidence 66778775 5677777766666665 89999999999999999999999999999999999998543
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc------------------C
Q psy2760 235 NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL------------------N 285 (333)
Q Consensus 235 ~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~------------------~ 285 (333)
..|+-+++++|||+|+.|+++.++..... +..+.|+..+. ..++++|+|+ .
T Consensus 436 gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 436 GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccc
Confidence 35888999999999999999988764332 33345554432 2267888876 2
Q ss_pred cceEecccccccc
Q psy2760 286 IGGLDELSIHDFN 298 (333)
Q Consensus 286 i~liViDe~H~~~ 298 (333)
+-++|.||+....
T Consensus 516 ~t~lv~deaDrmf 528 (997)
T KOG0334|consen 516 VTYLVLDEADRMF 528 (997)
T ss_pred cceeeechhhhhh
Confidence 3467788887555
No 60
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.27 E-value=2.6e-11 Score=122.37 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=86.8
Q ss_pred CCCCCCHHHHHHHHHHHc----CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC---
Q psy2760 191 WPFELDVFQKQAIIKLEE----HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--- 263 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~----g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~--- 263 (333)
+.+.++++|.+|+..+.. ++..++++|||+|||.++..++...... ++||+|+++|+.|+.+++.+.+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~---~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS---TLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC---EEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 345799999999999866 8999999999999999999887654433 999999999999999888776653
Q ss_pred cEEEeCCCCCCCCcceEEecc---------------CcceEeccccccccccC
Q psy2760 264 VGLIDDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 264 vglltGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
+|.+.|+........+++.|. ...++|+||+|......
T Consensus 110 ~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 110 IGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred cceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH
Confidence 688877755433245666654 37889999999998654
No 61
>PRK13766 Hef nuclease; Provisional
Probab=99.26 E-value=2.6e-11 Score=129.72 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEEE
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLI 267 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgll 267 (333)
+.++++|.+++..++.+ ++++++|||+|||+++.+++...+ ..+.++||++||++|+.|+.+.+++.++ .+..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 47899999999887776 999999999999999988877544 4578999999999999999999988664 36778
Q ss_pred eCCCCCCC------CcceEEecc---------------CcceEeccccccccc
Q psy2760 268 DDLPPVFP------DVEKLLEDL---------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 268 tGd~~~~~------~a~ili~t~---------------~i~liViDe~H~~~~ 299 (333)
+|+.+... ...+++.|+ ++.++|+||+|....
T Consensus 93 ~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~ 145 (773)
T PRK13766 93 TGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVG 145 (773)
T ss_pred eCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccc
Confidence 88876432 346778775 467899999998754
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.25 E-value=9.2e-12 Score=139.69 Aligned_cols=97 Identities=23% Similarity=0.210 Sum_probs=76.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHhc-------------CCCeEEEEcccHHHHHHHHHHHHHh----------cC----C--c
Q psy2760 214 VTAHTSAGKTVIAEYAIALSQN-------------HKTRTIYTSPIKALSNQKYRDFRET----------FQ----D--V 264 (333)
Q Consensus 214 v~apTGSGKTl~~~l~il~~l~-------------~g~ral~l~PtraLa~Q~~~~l~~~----------f~----~--v 264 (333)
|+||||||||++|++|++..+. ++.++|||+|+|||++|+++.|+.. ++ + +
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999884431 3578999999999999999988641 11 2 7
Q ss_pred EEEeCCCCCCC-------CcceEEecc----------------CcceEeccccccccccCcCcccccch
Q psy2760 265 GLIDDLPPVFP-------DVEKLLEDL----------------NIGGLDELSIHDFNKHLKFWKPKVQL 310 (333)
Q Consensus 265 glltGd~~~~~-------~a~ili~t~----------------~i~liViDe~H~~~~~~R~~~~~~~l 310 (333)
++++||++... ...++|.|+ ++.++|+||+|.+.+..||......+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~L 149 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSL 149 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHH
Confidence 88999987643 236888876 57899999999999888997765533
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.24 E-value=1.1e-11 Score=120.53 Aligned_cols=112 Identities=19% Similarity=0.104 Sum_probs=79.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCC--------------
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPV-------------- 273 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~-------------- 273 (333)
+++++||||||||++|+.+++... ..+.+++|++|+++|+.|++++++..|+. +++++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 479999999999999999998655 45679999999999999999999998874 6766654321
Q ss_pred -------C----CCcceEEeccC---------------------cceEeccccccccccCcCcccccchhh-----hhhh
Q psy2760 274 -------F----PDVEKLLEDLN---------------------IGGLDELSIHDFNKHLKFWKPKVQLDD-----LFDW 316 (333)
Q Consensus 274 -------~----~~a~ili~t~~---------------------i~liViDe~H~~~~~~R~~~~~~~l~~-----l~~l 316 (333)
+ ....++++|++ ..++|+||+|.+....++. ...+++ ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~--l~~~l~~l~~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL--ILAVLEVLKDNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH--HHHHHHHHHHcCCCE
Confidence 0 12346666541 1579999999998754432 111111 2456
Q ss_pred eeccCcch
Q psy2760 317 TMASDATT 324 (333)
Q Consensus 317 ~~~~d~~~ 324 (333)
+++|++..
T Consensus 159 i~~SATlp 166 (358)
T TIGR01587 159 LLMSATLP 166 (358)
T ss_pred EEEecCch
Confidence 77777644
No 64
>KOG0354|consensus
Probab=99.23 E-value=3e-11 Score=126.67 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCC---cEEE
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD---VGLI 267 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~---vgll 267 (333)
+.++.+|.+....++ |+|++|++|||+|||++|...+..++ .++.++||++|++-|+.|+...+...+-+ .+.+
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l 139 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQL 139 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceeec
Confidence 478999999999988 99999999999999999999988665 46789999999999999999777653322 3444
Q ss_pred eCCCCCCCC------cceEEecc----------------CcceEeccccccccc
Q psy2760 268 DDLPPVFPD------VEKLLEDL----------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 268 tGd~~~~~~------a~ili~t~----------------~i~liViDe~H~~~~ 299 (333)
+|..+.... .++++.|+ .+.++|+||+|+-..
T Consensus 140 ~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k 193 (746)
T KOG0354|consen 140 GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK 193 (746)
T ss_pred cCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc
Confidence 443443332 25666665 488999999998543
No 65
>KOG0336|consensus
Probab=99.14 E-value=6.3e-11 Score=116.44 Aligned_cols=122 Identities=16% Similarity=0.052 Sum_probs=94.5
Q ss_pred ChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHH---------hcCCCeEEEEc
Q psy2760 174 SKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS---------QNHKTRTIYTS 244 (333)
Q Consensus 174 ~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~---------l~~g~ral~l~ 244 (333)
.+.+..-.++.|++ .|+|+|.||.|.+++|.++++.|-||+|||++|++|-+.+ ...+.++++++
T Consensus 228 ~pevmenIkK~GFq------KPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ 301 (629)
T KOG0336|consen 228 YPEVMENIKKTGFQ------KPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLT 301 (629)
T ss_pred hHHHHHHHHhccCC------CCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEe
Confidence 44555556667777 8999999999999999999999999999999999986632 24578899999
Q ss_pred ccHHHHHHHHHHHHHh-cCC---cEEEeCCCCCC------CCcceEEecc---------------CcceEeccccccccc
Q psy2760 245 PIKALSNQKYRDFRET-FQD---VGLIDDLPPVF------PDVEKLLEDL---------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 245 PtraLa~Q~~~~l~~~-f~~---vglltGd~~~~------~~a~ili~t~---------------~i~liViDe~H~~~~ 299 (333)
|||+|+.|+.....+. +.. ++++.|+.... ...+++++|+ ++.++|+||+...-+
T Consensus 302 ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLD 381 (629)
T KOG0336|consen 302 PTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD 381 (629)
T ss_pred ccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhc
Confidence 9999999999776542 222 67666654321 2346777776 578899999998877
Q ss_pred cC
Q psy2760 300 HL 301 (333)
Q Consensus 300 ~~ 301 (333)
++
T Consensus 382 Mg 383 (629)
T KOG0336|consen 382 MG 383 (629)
T ss_pred cc
Confidence 65
No 66
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.13 E-value=3.1e-10 Score=98.22 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHH-------cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 193 FELDVFQKQAIIKLE-------EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~-------~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
|.|+++|.+|+..+. ..+++++.+|||||||.++...+..... ++++++|++.|+.|....|.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhh
Confidence 468999999999964 3689999999999999999976665544 899999999999999999955443
No 67
>KOG0337|consensus
Probab=99.12 E-value=7.1e-11 Score=116.34 Aligned_cols=127 Identities=14% Similarity=0.094 Sum_probs=95.1
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEccc
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPI 246 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~Pt 246 (333)
.+|+..+...+.+.++. .|+|+|+.++|.++++++++..|-||||||.+|++|++..+. .|.|+++++||
T Consensus 26 mgL~~~v~raI~kkg~~------~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 26 MGLDYKVLRAIHKKGFN------TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred cCCCHHHHHHHHHhhcC------CCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 45666666655565666 799999999999999999999999999999999999996653 45699999999
Q ss_pred HHHHHHHHHHHHHhcCC-----cEEEeCCCCC-------CCCcceEEecc---------------CcceEeccccccccc
Q psy2760 247 KALSNQKYRDFRETFQD-----VGLIDDLPPV-------FPDVEKLLEDL---------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 247 raLa~Q~~~~l~~~f~~-----vglltGd~~~-------~~~a~ili~t~---------------~i~liViDe~H~~~~ 299 (333)
|+|+.|..+.+++ ++. ..++.|+-++ +.+..++++|+ .+.++|.||+..+..
T Consensus 100 reLa~qtlkvvkd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfe 178 (529)
T KOG0337|consen 100 RELALQTLKVVKD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFE 178 (529)
T ss_pred HHHHHHHHHHHHH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHh
Confidence 9999999998876 443 3334444443 22345667665 456677788876654
Q ss_pred cCcCccc
Q psy2760 300 HLKFWKP 306 (333)
Q Consensus 300 ~~R~~~~ 306 (333)
. ||+.
T Consensus 179 m--gfqe 183 (529)
T KOG0337|consen 179 M--GFQE 183 (529)
T ss_pred h--hhHH
Confidence 3 4543
No 68
>KOG0344|consensus
Probab=99.12 E-value=1.4e-10 Score=118.00 Aligned_cols=94 Identities=26% Similarity=0.285 Sum_probs=76.4
Q ss_pred CCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-------
Q psy2760 162 VTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------- 234 (333)
Q Consensus 162 ~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l------- 234 (333)
.+|..+......+..+.+-+...++. .|+++|.+|++.+..+++++.|||||||||++|.+|++..+
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~~~F~------~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~ 205 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQELGFD------EPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEK 205 (593)
T ss_pred ccccccchhhhhcHHHHHhHhhCCCC------CCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhccc
Confidence 35555555555566665554444444 89999999999999999999999999999999999999654
Q ss_pred -cCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 235 -NHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 235 -~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
..|-+++++.|||+|++|+++++++..
T Consensus 206 ~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 206 HKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CccceEEEEecchHHHHHHHHHHHHhcC
Confidence 235789999999999999999998855
No 69
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.11 E-value=3.9e-10 Score=91.61 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcC---CcEEEeCCCCCC-------CCc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLIDDLPPVF-------PDV 277 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~~f~---~vglltGd~~~~-------~~a 277 (333)
+++++.+|||+|||.++...+..... ...+++|++|+++++.|..+.+...+. .+..+.+..... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 47899999999999999988875553 568999999999999999999888764 266666654433 344
Q ss_pred ceEEecc---------------CcceEeccccccccccCcCc
Q psy2760 278 EKLLEDL---------------NIGGLDELSIHDFNKHLKFW 304 (333)
Q Consensus 278 ~ili~t~---------------~i~liViDe~H~~~~~~R~~ 304 (333)
.++++|. ...++++||+|.+.......
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHH
Confidence 5666654 36789999999998775433
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.4e-10 Score=114.86 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhcC----CcEEEe
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLID 268 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgllt 268 (333)
+++.+|.......+.+ |.|++.|||-|||.++.+-+...+. .++++|+++||+-|+.|+.+.+++.++ .++.+|
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~lt 93 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALT 93 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeec
Confidence 5788888877766554 9999999999999999998885553 334899999999999999999988775 288999
Q ss_pred CCCCCCC------CcceEEecc---------------CcceEeccccccc
Q psy2760 269 DLPPVFP------DVEKLLEDL---------------NIGGLDELSIHDF 297 (333)
Q Consensus 269 Gd~~~~~------~a~ili~t~---------------~i~liViDe~H~~ 297 (333)
|..+.+. .++++++|+ +++++|.||+|.-
T Consensus 94 Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA 143 (542)
T COG1111 94 GEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred CCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhc
Confidence 9988763 357888887 6899999999975
No 71
>KOG0953|consensus
Probab=99.09 E-value=7.6e-11 Score=119.36 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=97.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC--------cce
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPD--------VEK 279 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~~~~--------a~i 279 (333)
+.+-++-+|||.||||.-++ +.+....+++|..|.|-||+++++++.+.--.+.++||.-..... ..|
T Consensus 190 ~RkIi~H~GPTNSGKTy~AL----qrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRAL----QRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSC 265 (700)
T ss_pred hheEEEEeCCCCCchhHHHH----HHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEE
Confidence 45667889999999998765 455666789999999999999999998855568899997543211 246
Q ss_pred EEecc----CcceEeccccccccccCcCcccccch----------------hhhhhheeccCcchhhhhhccc
Q psy2760 280 LLEDL----NIGGLDELSIHDFNKHLKFWKPKVQL----------------DDLFDWTMASDATTLEIFTYNK 332 (333)
Q Consensus 280 li~t~----~i~liViDe~H~~~~~~R~~~~~~~l----------------~~l~~l~~~~d~~~~e~~~~~~ 332 (333)
+|.+. .....|+||+++..+++|||+|..++ +.+++.++...-+.+|+++|-|
T Consensus 266 TVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeR 338 (700)
T KOG0953|consen 266 TVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYER 338 (700)
T ss_pred EEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeecc
Confidence 66644 45778999999999999999998766 6778889999999999999976
No 72
>KOG0339|consensus
Probab=99.08 E-value=1.5e-10 Score=116.16 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh--------cCCCeEEEEcccHHHHHHHHHHHHHhcCC-c
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--------NHKTRTIYTSPIKALSNQKYRDFRETFQD-V 264 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l--------~~g~ral~l~PtraLa~Q~~~~l~~~f~~-v 264 (333)
.++++|-++++..+.|++++..|-||||||.+|..|++.+. ..|+-++|++|||+||.|++.+.++ |++ +
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKk-f~K~y 323 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKK-FGKAY 323 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHH-hhhhc
Confidence 79999999999999999999999999999999999988432 4578899999999999999999866 643 2
Q ss_pred ----EEEeCCCCCC-------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 265 ----GLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 265 ----glltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
..+.|+.+.. ..++++|+|+ ++.++|+||+...-+.+
T Consensus 324 gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG 386 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG 386 (731)
T ss_pred cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccc
Confidence 2244544432 3457888887 57889999998765553
No 73
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=3.1e-10 Score=121.83 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=78.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
.||.++|+|.|+++.+..++++++.++||+|||++|.+|++.....+..+++|+||++||.|..+.+...+.. ++.
T Consensus 89 ~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~ 168 (970)
T PRK12899 89 QQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGV 168 (970)
T ss_pred CCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 4677899999999999999999999999999999999999966655667999999999999999988776542 677
Q ss_pred EeCCCCCCCC-----cceEEecc
Q psy2760 267 IDDLPPVFPD-----VEKLLEDL 284 (333)
Q Consensus 267 ltGd~~~~~~-----a~ili~t~ 284 (333)
+.|+.....+ ..++++|+
T Consensus 169 i~GG~~~~eq~~~y~~DIVygTP 191 (970)
T PRK12899 169 LVSGSPLEKRKEIYQCDVVYGTA 191 (970)
T ss_pred EeCCCCHHHHHHHcCCCEEEECC
Confidence 8888776432 35666666
No 74
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.06 E-value=1.8e-10 Score=123.29 Aligned_cols=134 Identities=9% Similarity=0.014 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHcCC-cEEEEcCCCCcHHHHHHHHHH---HHhcCCCeEEEEcccHHHHHHHHHHHHHhcC-----
Q psy2760 192 PFELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----- 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~-~vlv~apTGSGKTl~~~l~il---~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----- 262 (333)
+|.|+|+|.++++.+..|+ ++++++|||||||.++....+ .......+.+|++|||+||.|+++.+.+...
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~ 92 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDV 92 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhccc
Confidence 4569999999999999998 677889999999996543222 1112234677788999999999988766332
Q ss_pred --------------------C--cEEEeCCCCCCCC-------cceEEecc---------------------------Cc
Q psy2760 263 --------------------D--VGLIDDLPPVFPD-------VEKLLEDL---------------------------NI 286 (333)
Q Consensus 263 --------------------~--vglltGd~~~~~~-------a~ili~t~---------------------------~i 286 (333)
+ +..++|+...+.+ ..++|+|. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v 172 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQD 172 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccc
Confidence 1 4567888776432 24667664 25
Q ss_pred ceEeccccccccccCcCcccccchhhh---------hhheeccCcchhhhh
Q psy2760 287 GGLDELSIHDFNKHLKFWKPKVQLDDL---------FDWTMASDATTLEIF 328 (333)
Q Consensus 287 ~liViDe~H~~~~~~R~~~~~~~l~~l---------~~l~~~~d~~~~e~~ 328 (333)
.++|+||+| .. .+ +.....+++.. .+.+++|++..-++.
T Consensus 173 ~~LVLDEAD-Ld-~g-F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~ 220 (844)
T TIGR02621 173 ALIVHDEAH-LE-PA-FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGP 220 (844)
T ss_pred eEEEEehhh-hc-cc-cHHHHHHHHHhcccCcccccceEEEEecCCCccHH
Confidence 678999999 32 22 22222223331 246778887665544
No 75
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.05 E-value=8.9e-10 Score=116.40 Aligned_cols=128 Identities=12% Similarity=0.024 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHHHH---------HHHHHHHHh---c---CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 197 VFQKQAIIKLEEHNHVFVTAHTSAGKTVI---------AEYAIALSQ---N---HKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 197 ~~Q~~ai~~l~~g~~vlv~apTGSGKTl~---------~~l~il~~l---~---~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
.+|.++++.+.+|++++++|+||||||.+ |+++.+..+ . .+.++++++|||+||.|+..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 47788888899999999999999999997 333333222 2 35689999999999999999987644
Q ss_pred CC-------cEEEeCCCCCC------CCcceEEecc--------CcceEeccccccccccCcCcccc-cch-hhhhhhee
Q psy2760 262 QD-------VGLIDDLPPVF------PDVEKLLEDL--------NIGGLDELSIHDFNKHLKFWKPK-VQL-DDLFDWTM 318 (333)
Q Consensus 262 ~~-------vglltGd~~~~------~~a~ili~t~--------~i~liViDe~H~~~~~~R~~~~~-~~l-~~l~~l~~ 318 (333)
+. +.+..|+.... ....++++|. ++.++|+||+|.....+...-.. ..+ .+..+.++
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~IL 326 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFL 326 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEE
Confidence 32 46677876521 1235677764 46889999999976654211000 000 11236788
Q ss_pred ccCcch
Q psy2760 319 ASDATT 324 (333)
Q Consensus 319 ~~d~~~ 324 (333)
+|++-.
T Consensus 327 mSATl~ 332 (675)
T PHA02653 327 MTATLE 332 (675)
T ss_pred EccCCc
Confidence 888763
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=1.6e-09 Score=114.77 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHH-cC--CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----Cc
Q psy2760 192 PFELDVFQKQAIIKLE-EH--NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DV 264 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~-~g--~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~v 264 (333)
.+.++++|.+|+..+. .| ++.++++|||+|||++++.++... +.++||++|+..|++|+.++|.+.+. .+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 3589999999999974 44 478999999999999998766432 46799999999999999999987542 27
Q ss_pred EEEeCCCCCCC--CcceEEecc-----------------------CcceEecccccccccc
Q psy2760 265 GLIDDLPPVFP--DVEKLLEDL-----------------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 265 glltGd~~~~~--~a~ili~t~-----------------------~i~liViDe~H~~~~~ 300 (333)
+.++|+..... ...++|.|. ..+++|+||+|.+...
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~ 390 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA 390 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH
Confidence 88888765432 245666654 2458999999988543
No 77
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=1.5e-09 Score=115.88 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=75.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
++..|++.|..+...+.+|+ ++.+.||+|||++|.+|++.....|.++.+++||+.||.|.++.+...+.. +++
T Consensus 75 ~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~ 152 (790)
T PRK09200 75 LGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGL 152 (790)
T ss_pred hCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 45568999999988888887 999999999999999999866667999999999999999999998886653 788
Q ss_pred EeCCCC-CC-----CCcceEEecc
Q psy2760 267 IDDLPP-VF-----PDVEKLLEDL 284 (333)
Q Consensus 267 ltGd~~-~~-----~~a~ili~t~ 284 (333)
++|+.+ .. ....++++|+
T Consensus 153 i~g~~~~~~~r~~~y~~dIvygT~ 176 (790)
T PRK09200 153 NFSDIDDASEKKAIYEADIIYTTN 176 (790)
T ss_pred EeCCCCcHHHHHHhcCCCEEEECC
Confidence 888877 21 2345666664
No 78
>KOG0951|consensus
Probab=98.98 E-value=1.1e-09 Score=118.69 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHH-cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-----------CCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 194 ELDVFQKQAIIKLE-EHNHVFVTAHTSAGKTVIAEYAIALSQNH-----------KTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~-~g~~vlv~apTGSGKTl~~~l~il~~l~~-----------g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
.|+++|......++ ...|+++|||||+|||.++++.|++.+.. ..+++|++|+++|++++...|.+++
T Consensus 309 sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl 388 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL 388 (1674)
T ss_pred hhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc
Confidence 58999999999864 55699999999999999999999965532 2479999999999999999999998
Q ss_pred CC----cEEEeCCCCCCC----CcceEEecc-----------------CcceEeccccccccccCcCccc
Q psy2760 262 QD----VGLIDDLPPVFP----DVEKLLEDL-----------------NIGGLDELSIHDFNKHLKFWKP 306 (333)
Q Consensus 262 ~~----vglltGd~~~~~----~a~ili~t~-----------------~i~liViDe~H~~~~~~R~~~~ 306 (333)
.+ |+-+|||.+... ...++++|+ -+.++++||+|+..+. ||-.-
T Consensus 389 a~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvL 457 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVL 457 (1674)
T ss_pred cccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHH
Confidence 86 566899977543 346777766 1456778999987533 55443
No 79
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.97 E-value=3.3e-09 Score=114.38 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cEEEeCCC-
Q psy2760 198 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLIDDLP- 271 (333)
Q Consensus 198 ~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vglltGd~- 271 (333)
+-.+.+..+.++++++++||||||||.++.++++.....+.+++++.|||++|.|+.+++.+.++. ||..+++.
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 334555667788999999999999999999998865544568999999999999999999766542 55555443
Q ss_pred CCCCCcceEEecc--------------CcceEeccccccccccCcC-cccccc----hhhhhhheeccCcchhh
Q psy2760 272 PVFPDVEKLLEDL--------------NIGGLDELSIHDFNKHLKF-WKPKVQ----LDDLFDWTMASDATTLE 326 (333)
Q Consensus 272 ~~~~~a~ili~t~--------------~i~liViDe~H~~~~~~R~-~~~~~~----l~~l~~l~~~~d~~~~e 326 (333)
....+..++++|. ++.++|+||+|...-.... ...... +-...+++++|++-..+
T Consensus 89 ~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~ 162 (812)
T PRK11664 89 KVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND 162 (812)
T ss_pred ccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH
Confidence 3444456777775 5789999999974322111 111100 11235678888775544
No 80
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.97 E-value=4.1e-09 Score=113.68 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cEEEeC-CC
Q psy2760 198 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLIDD-LP 271 (333)
Q Consensus 198 ~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vglltG-d~ 271 (333)
+-.+.+..+..+.+++++|+||||||.++..+++.....+.+++++.|+|++|.|+.+++.+.++. ||...+ +.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 334555667788999999999999999999999876656679999999999999999999766652 444333 33
Q ss_pred CCCCCcceEEecc--------------CcceEecccccccc-ccCcCcccccc----hhhhhhheeccCcchhhh
Q psy2760 272 PVFPDVEKLLEDL--------------NIGGLDELSIHDFN-KHLKFWKPKVQ----LDDLFDWTMASDATTLEI 327 (333)
Q Consensus 272 ~~~~~a~ili~t~--------------~i~liViDe~H~~~-~~~R~~~~~~~----l~~l~~l~~~~d~~~~e~ 327 (333)
......++.++|. ++.++|+||+|... ....+...... +-...+++++|++-.-+.
T Consensus 86 ~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~ 160 (819)
T TIGR01970 86 KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER 160 (819)
T ss_pred ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH
Confidence 3334456777775 57899999999532 11112211111 112356788887655443
No 81
>KOG0341|consensus
Probab=98.96 E-value=5e-11 Score=116.48 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=78.8
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH-HH----------hcCCCeEE
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LS----------QNHKTRTI 241 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il-~~----------l~~g~ral 241 (333)
.+.++.++++..|+. .|+|+|.|-+|.+++|++.+..|-||||||++|.+|++ .+ ...|+-.+
T Consensus 177 FP~~~L~~lk~KGI~------~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gL 250 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIV------HPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGL 250 (610)
T ss_pred CCHHHHHHHHhcCCC------CCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeE
Confidence 345566666666776 89999999999999999999999999999999999876 22 24688999
Q ss_pred EEcccHHHHHHHHHHHHHhcC---C-------cEEEeCCCCCCCCc
Q psy2760 242 YTSPIKALSNQKYRDFRETFQ---D-------VGLIDDLPPVFPDV 277 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~---~-------vglltGd~~~~~~a 277 (333)
+++|.|+||.|++.-+...+. . .++..|+.....+.
T Consensus 251 iicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql 296 (610)
T KOG0341|consen 251 IICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQL 296 (610)
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHH
Confidence 999999999999976655332 1 36677887776543
No 82
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.96 E-value=2.2e-09 Score=113.59 Aligned_cols=107 Identities=13% Similarity=-0.042 Sum_probs=85.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
++..|++.|..+...+..|+ +..++||+|||++|.+|++.....|.++.+++||+.||.|.++.+...+.. ++.
T Consensus 53 lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred hCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 45578899998888888776 899999999999999998644445778999999999999999999887764 688
Q ss_pred EeCCCCCCC-----CcceEEecc----------------------CcceEeccccccccc
Q psy2760 267 IDDLPPVFP-----DVEKLLEDL----------------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 267 ltGd~~~~~-----~a~ili~t~----------------------~i~liViDe~H~~~~ 299 (333)
++|+..... ...+++.|+ ++.++|+||.|.+..
T Consensus 131 i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 131 ILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred EeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 888866432 235777765 356788999998765
No 83
>PRK09694 helicase Cas3; Provisional
Probab=98.95 E-value=3.9e-09 Score=114.28 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHH----hcCC--
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRE----TFQD-- 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~----~f~~-- 263 (333)
.+.|+|+|+.+......+..+++.||||+|||.+++.++..... ...+++|..||+++++|+++++++ .|+.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35899999987544445678999999999999999887764433 346899999999999999999864 4442
Q ss_pred cEEEeCCC
Q psy2760 264 VGLIDDLP 271 (333)
Q Consensus 264 vglltGd~ 271 (333)
+.+.+|..
T Consensus 364 v~L~Hg~a 371 (878)
T PRK09694 364 LILAHGNS 371 (878)
T ss_pred eEeecCcc
Confidence 77777654
No 84
>KOG0326|consensus
Probab=98.94 E-value=3e-10 Score=108.89 Aligned_cols=108 Identities=14% Similarity=0.050 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
.|.|+|.++||.++.|++++..|..|.|||.+|.+|++.... ...++++++|||+||.|+.+..++.-.. +-+
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmv 186 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMV 186 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEE
Confidence 599999999999999999999999999999999999996654 3468999999999999998877664332 566
Q ss_pred EeCCCCCCCC-------cceEEecc---------------CcceEeccccccccccC
Q psy2760 267 IDDLPPVFPD-------VEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 267 ltGd~~~~~~-------a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
.||+++...+ ..++|.|+ +...+|.||+.++-+..
T Consensus 187 ttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 187 TTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred ecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh
Confidence 7898876533 24566665 45668889988876654
No 85
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=3.8e-09 Score=110.82 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=78.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
.+..|+++|..+++.++.|+ ++.+.||+|||++|.+|++.....|.++++++||++||.|.++.+...+.. ++.
T Consensus 100 lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred hCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 45579999999999999998 899999999999999999988778899999999999999999999876642 788
Q ss_pred EeCCCCCC-----CCcceEEecc
Q psy2760 267 IDDLPPVF-----PDVEKLLEDL 284 (333)
Q Consensus 267 ltGd~~~~-----~~a~ili~t~ 284 (333)
++|+.+.. ....+++.|.
T Consensus 178 i~gg~~~~~r~~~y~~dIvygT~ 200 (656)
T PRK12898 178 VVEDQSPDERRAAYGADITYCTN 200 (656)
T ss_pred EeCCCCHHHHHHHcCCCEEEECC
Confidence 88886542 2345667665
No 86
>KOG4284|consensus
Probab=98.90 E-value=9.4e-10 Score=113.13 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=100.0
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCe
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTR 239 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~r 239 (333)
.|+++..+. .+..++++.++. .++++|..|||.++.+.+++|.|..|.|||++|-.+++..+. ....
T Consensus 26 ~fe~l~l~r----~vl~glrrn~f~------~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q 95 (980)
T KOG4284|consen 26 GFEQLALWR----EVLLGLRRNAFA------LPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQ 95 (980)
T ss_pred CHHHHHHHH----HHHHHHHhhccc------CCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcce
Confidence 566665554 455555554444 699999999999999999999999999999999887776553 4578
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCC-----cEEEeCCCCCCC------CcceEEecc---------------CcceEeccc
Q psy2760 240 TIYTSPIKALSNQKYRDFRETFQD-----VGLIDDLPPVFP------DVEKLLEDL---------------NIGGLDELS 293 (333)
Q Consensus 240 al~l~PtraLa~Q~~~~l~~~f~~-----vglltGd~~~~~------~a~ili~t~---------------~i~liViDe 293 (333)
+++++|||++|-|+...+.+.... +.++.||+.... +.+++|.|+ .+-++|+||
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 999999999999999999876542 778889876543 235777776 567889999
Q ss_pred ccccccc
Q psy2760 294 IHDFNKH 300 (333)
Q Consensus 294 ~H~~~~~ 300 (333)
+.++...
T Consensus 176 ADkL~~t 182 (980)
T KOG4284|consen 176 ADKLMDT 182 (980)
T ss_pred HHhhhch
Confidence 9887653
No 87
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.86 E-value=7.8e-09 Score=109.92 Aligned_cols=102 Identities=13% Similarity=0.027 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDD 269 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltG 269 (333)
.|++.|......+..| .++.++||+|||++|.+|++.....|..+++++|+++||.|..+.+...+.. ++...+
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~ 147 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVV 147 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 3444444444444555 6999999999999999998766667888999999999999999888665432 666655
Q ss_pred CCC---CC-------CCcceEEecc----------------------CcceEeccccccc
Q psy2760 270 LPP---VF-------PDVEKLLEDL----------------------NIGGLDELSIHDF 297 (333)
Q Consensus 270 d~~---~~-------~~a~ili~t~----------------------~i~liViDe~H~~ 297 (333)
+.. .. ....++++|+ ++.++|+||+|.+
T Consensus 148 ~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsI 207 (762)
T TIGR03714 148 DDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSV 207 (762)
T ss_pred CCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhH
Confidence 411 11 2345777765 2346888998876
No 88
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.86 E-value=4.8e-09 Score=110.78 Aligned_cols=115 Identities=9% Similarity=-0.081 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC-C-cEEEeCCCCCC-----------CCcceEEec
Q psy2760 217 HTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-D-VGLIDDLPPVF-----------PDVEKLLED 283 (333)
Q Consensus 217 pTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~-~-vglltGd~~~~-----------~~a~ili~t 283 (333)
.+|||||.+|+-.+...+..|+++|+++|..+|+.|+.++|+++|+ . +.+++++.+.. .+..++|.|
T Consensus 168 ~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGt 247 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGT 247 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 3599999999999999999999999999999999999999999997 4 88899887643 334677776
Q ss_pred c--------CcceEecccccccc-ccC-------cCcccccchhhhhhheeccCcchhhhhhcc
Q psy2760 284 L--------NIGGLDELSIHDFN-KHL-------KFWKPKVQLDDLFDWTMASDATTLEIFTYN 331 (333)
Q Consensus 284 ~--------~i~liViDe~H~~~-~~~-------R~~~~~~~l~~l~~l~~~~d~~~~e~~~~~ 331 (333)
- ++++||+||-|.-. ... |..+..++-...+.++++|+++|+|.|.+.
T Consensus 248 RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 248 RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 4 78999999999542 122 223333444567889999999999999753
No 89
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.85 E-value=5e-09 Score=108.47 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=87.7
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltG 269 (333)
|+| .|++-|.++|..+.+|+++++..|||+||+++|.+|.+.. .+-+|+|+|..+|...+.+.++..--.+..+.+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS 89 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNS 89 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCceeehhhc
Confidence 455 7899999999999999999999999999999999998644 347899999999999999999774323444554
Q ss_pred CCCCCCC-----------cceEEecc---------------CcceEeccccccccccCcCcccc
Q psy2760 270 LPPVFPD-----------VEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 270 d~~~~~~-----------a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~ 307 (333)
.++.... -.++.-.+ .+.++++||+|.+...+-.||..
T Consensus 90 ~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~ 153 (590)
T COG0514 90 TLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPD 153 (590)
T ss_pred ccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHh
Confidence 4443211 12222222 78999999999999887677764
No 90
>KOG0328|consensus
Probab=98.77 E-value=7.8e-09 Score=97.90 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=82.4
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhcCC---
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQD--- 263 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~PtraLa~Q~~~~l~~~f~~--- 263 (333)
++| .|..+|++|++.++.|++|++.|..|.|||..|-+.+++... +..++++++|||+||.|+.+.+...-..
T Consensus 45 yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv 124 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNV 124 (400)
T ss_pred hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccc
Confidence 455 899999999999999999999999999999999988886654 3467999999999999999998774332
Q ss_pred -cEEEeCCCCCCC-------CcceEEecc---------------CcceEecccccccc
Q psy2760 264 -VGLIDDLPPVFP-------DVEKLLEDL---------------NIGGLDELSIHDFN 298 (333)
Q Consensus 264 -vglltGd~~~~~-------~a~ili~t~---------------~i~liViDe~H~~~ 298 (333)
+....|+.+... ...++..|+ ++-++|.||..-.-
T Consensus 125 q~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred eEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence 444667666322 223344443 56778888877543
No 91
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.76 E-value=3.6e-08 Score=109.47 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHH-----cCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCCcE
Q psy2760 193 FELDVFQKQAIIKLE-----EHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQDVG 265 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~-----~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~vg 265 (333)
+.++++|.+|+..+. ..++++++++||||||.++...+...+ ....|+||++|+++|+.|..+.|.......+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 478999999998752 346899999999999998766554333 3457999999999999999999977422111
Q ss_pred -----EE--e--CCCCCCCCcceEEecc--------------------CcceEeccccccc
Q psy2760 266 -----LI--D--DLPPVFPDVEKLLEDL--------------------NIGGLDELSIHDF 297 (333)
Q Consensus 266 -----ll--t--Gd~~~~~~a~ili~t~--------------------~i~liViDe~H~~ 297 (333)
+. . ++........++++|. ...+||+||+|.-
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 11 1 1222233456666654 1348899999984
No 92
>KOG0949|consensus
Probab=98.76 E-value=1.5e-08 Score=108.19 Aligned_cols=117 Identities=24% Similarity=0.226 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcCC------
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD------ 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~~f~~------ 263 (333)
.|.|+.||++.+..+..+.++++.|||++|||.+..++|...++ ...-+||++||++|++|+...+..+|..
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 48999999999999999999999999999999999999986654 4567999999999999999999888832
Q ss_pred ---cEEEeCCCCCCCCc-ceEEecc------------------CcceEeccccccccccCcCccccc
Q psy2760 264 ---VGLIDDLPPVFPDV-EKLLEDL------------------NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 264 ---vglltGd~~~~~~a-~ili~t~------------------~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
.|.+|-+.++++-. ++++..+ .|-.+|.||+|.++...-+.-|+.
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq 655 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQ 655 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHH
Confidence 35566666666432 2333322 577889999999997765655543
No 93
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.75 E-value=3.4e-08 Score=94.60 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCC-----eEEEEcccHHHHHHHHHHHHH
Q psy2760 190 TWPFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKT-----RTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~-----ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|||.+++.|.+.+.. +..|.++++.||||+|||++++.|++. ....+. +++|.++|.++..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3899999999996555 578999999999999999999999873 333233 899999999999999888876
Q ss_pred h
Q psy2760 260 T 260 (333)
Q Consensus 260 ~ 260 (333)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 94
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.75 E-value=3.4e-08 Score=94.60 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCC-----eEEEEcccHHHHHHHHHHHHH
Q psy2760 190 TWPFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKT-----RTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~-----ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|||.+++.|.+.+.. +..|.++++.||||+|||++++.|++. ....+. +++|.++|.++..|....+++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3899999999996555 578999999999999999999999873 333233 899999999999999888876
Q ss_pred h
Q psy2760 260 T 260 (333)
Q Consensus 260 ~ 260 (333)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.70 E-value=8.6e-08 Score=92.99 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC--cEEE
Q psy2760 194 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLI 267 (333)
Q Consensus 194 ~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~--vgll 267 (333)
.+++.|+.+-..+ .+.++.++.|.||||||..-.-+|.++++.|.++.+.+|....+.+++.+++..|++ +.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 7999999987764 678899999999999999999999999999999999999999999999999999985 7889
Q ss_pred eCCCCCCCCcceEEecc--------CcceEecccccccc---ccCcCcccccchhhhhhheeccCcch
Q psy2760 268 DDLPPVFPDVEKLLEDL--------NIGGLDELSIHDFN---KHLKFWKPKVQLDDLFDWTMASDATT 324 (333)
Q Consensus 268 tGd~~~~~~a~ili~t~--------~i~liViDe~H~~~---~~~R~~~~~~~l~~l~~l~~~~d~~~ 324 (333)
.|+.....++..+|+|+ ...++++||..-|. +..-.++-..+.-..-..+.++++++
T Consensus 177 yg~S~~~fr~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 177 YGDSDSYFRAPLVVATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred ecCCchhccccEEEEehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCCh
Confidence 99999888899999987 56788889888764 22212222222222333556666655
No 96
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.68 E-value=7e-08 Score=103.75 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=85.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcE-
Q psy2760 187 MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG- 265 (333)
Q Consensus 187 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vg- 265 (333)
+.+..+|.|+..|+-+...+..|++.-+.||||.|||...++..+....+|.|++|++||+.|+.|+++++.+.....+
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 3445566899999999999999999999999999999998887777777889999999999999999999977442221
Q ss_pred -----EEeCCCCCC-----------CCcceEEecc-------------CcceEecccccccc
Q psy2760 266 -----LIDDLPPVF-----------PDVEKLLEDL-------------NIGGLDELSIHDFN 298 (333)
Q Consensus 266 -----lltGd~~~~-----------~~a~ili~t~-------------~i~liViDe~H~~~ 298 (333)
+++|..+.. .+.+++|.|. ...++.+|-..-+-
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHH
Confidence 155654432 2346777775 34555566555443
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.66 E-value=6.9e-08 Score=103.89 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=72.9
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cE
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VG 265 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vg 265 (333)
.++..++..|...--.+..|+ +..++||+|||++|.+|++.....|..+.+++||+.||.|.++.+...+.. ++
T Consensus 78 ~lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~ 155 (896)
T PRK13104 78 TLGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVG 155 (896)
T ss_pred HcCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 344567778877666666665 779999999999999999866666788999999999999999999887653 78
Q ss_pred EEeCCCCCCC-----CcceEEecc
Q psy2760 266 LIDDLPPVFP-----DVEKLLEDL 284 (333)
Q Consensus 266 lltGd~~~~~-----~a~ili~t~ 284 (333)
+++|+..... ...++++|+
T Consensus 156 ~i~gg~~~~~r~~~y~~dIvygT~ 179 (896)
T PRK13104 156 VIYPDMSHKEKQEAYKADIVYGTN 179 (896)
T ss_pred EEeCCCCHHHHHHHhCCCEEEECC
Confidence 8888866432 246777766
No 98
>KOG0352|consensus
Probab=98.65 E-value=6.9e-08 Score=95.82 Aligned_cols=110 Identities=18% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEe-----
Q psy2760 195 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLID----- 268 (333)
Q Consensus 195 l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgllt----- 268 (333)
-++.|.+|+.++ ....+|.|+.|||+||+++|.+|.+.+ +.-.|+++|..||+..+.++|.++--.+.-+.
T Consensus 21 Ks~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 21 KSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLST 97 (641)
T ss_pred cChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhH
Confidence 488999999996 777899999999999999999997644 34788999999999999999876322232222
Q ss_pred -------CCCCC-CCCcceEEecc-------------------CcceEeccccccccccCcCcccc
Q psy2760 269 -------DLPPV-FPDVEKLLEDL-------------------NIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 269 -------Gd~~~-~~~a~ili~t~-------------------~i~liViDe~H~~~~~~R~~~~~ 307 (333)
+|+.. .++..++.-|+ -+.++++||+|.+...+..++..
T Consensus 98 ~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred HHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 22221 12223333333 36889999999999887777764
No 99
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.63 E-value=1.4e-07 Score=102.54 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2760 191 WPFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~ 255 (333)
.+|++++.|.+++.. +..++++++.||||+|||++|++|++.....+.+++|.+||++|..|+..
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 456889999987774 56889999999999999999999987654467899999999999999875
No 100
>KOG0951|consensus
Probab=98.62 E-value=4.4e-08 Score=106.66 Aligned_cols=107 Identities=19% Similarity=0.335 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cEEE
Q psy2760 194 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLI 267 (333)
Q Consensus 194 ~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vgll 267 (333)
.++++|.|+++.+ ..++++++++|+|||||.++.++++. ...-.+++|++|..+.+..+++.|.++|+. +..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l 1221 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL 1221 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec
Confidence 4599999999997 88899999999999999999999876 445578999999999999999999999986 4557
Q ss_pred eCCCCCCC----CcceEEecc----------CcceEeccccccccccC
Q psy2760 268 DDLPPVFP----DVEKLLEDL----------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 268 tGd~~~~~----~a~ili~t~----------~i~liViDe~H~~~~~~ 301 (333)
+|+.+.+. .+.+++.|+ .+.+++.|+.|+.++..
T Consensus 1222 ~ge~s~~lkl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1222 TGETSLDLKLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred CCccccchHHhhhcceEEechhHHHHHhhhhhcceEeeehhhhhcccC
Confidence 88877653 357888887 46889999999998443
No 101
>KOG0332|consensus
Probab=98.61 E-value=1.7e-07 Score=91.73 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhcCCcEE--
Q psy2760 194 ELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQDVGL-- 266 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~PtraLa~Q~~~~l~~~f~~vgl-- 266 (333)
.|+.+|..|+|.++ -.+|++..+..|+|||.+|.+.++.... ..+.++.++|||+||.|+.+.+.+.-+..++
T Consensus 112 kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita 191 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTA 191 (477)
T ss_pred CcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeE
Confidence 69999999999974 5579999999999999999999996553 3577899999999999999999874322211
Q ss_pred ---EeCCCCCC---CCcceEEecc----------------CcceEecccccc
Q psy2760 267 ---IDDLPPVF---PDVEKLLEDL----------------NIGGLDELSIHD 296 (333)
Q Consensus 267 ---ltGd~~~~---~~a~ili~t~----------------~i~liViDe~H~ 296 (333)
+-|....+ ..+++++.|+ .+-.++.||+..
T Consensus 192 ~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 192 SYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV 243 (477)
T ss_pred EEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh
Confidence 22221111 1245677765 456788899874
No 102
>KOG0327|consensus
Probab=98.56 E-value=5.7e-08 Score=95.00 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhcCC---
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQD--- 263 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~PtraLa~Q~~~~l~~~f~~--- 263 (333)
++| .|+.+|++||.++..|.|+.+.+.+|+|||.+|..++++... +...|++++|+|+||.|+.......+..
T Consensus 44 yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 455 899999999999999999999999999999999999987643 3467999999999999999777664432
Q ss_pred -cEEEeCCCCC
Q psy2760 264 -VGLIDDLPPV 273 (333)
Q Consensus 264 -vglltGd~~~ 273 (333)
+....|+...
T Consensus 124 ~v~~~igg~~~ 134 (397)
T KOG0327|consen 124 SVHACIGGTNV 134 (397)
T ss_pred eeeeecCcccc
Confidence 3445555544
No 103
>KOG0950|consensus
Probab=98.52 E-value=1.4e-07 Score=100.87 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHH--HHcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEE----
Q psy2760 194 ELDVFQKQAIIK--LEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL---- 266 (333)
Q Consensus 194 ~l~~~Q~~ai~~--l~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgl---- 266 (333)
.++.||.+++.. +++++|.+..+||+.|||+++.+.++. .+..++.++++.|..+-+.+....+...+-+.|+
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~ 302 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEE 302 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchh
Confidence 789999999765 789999999999999999999998874 4566778999999999999998888765444333
Q ss_pred EeCCCC---CCCCcceEEecc-----------------CcceEeccccccccccCcCccccc
Q psy2760 267 IDDLPP---VFPDVEKLLEDL-----------------NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 267 ltGd~~---~~~~a~ili~t~-----------------~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
+.|... ......+.++|. .++.+|+||.|++++.+||.-.+.
T Consensus 303 y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~ 364 (1008)
T KOG0950|consen 303 YAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILEL 364 (1008)
T ss_pred hcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHH
Confidence 334433 333445666664 478999999999999999987654
No 104
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.41 E-value=8.1e-07 Score=94.26 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHH----Hc------CCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 194 ELDVFQKQAIIKL----EE------HNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 194 ~l~~~Q~~ai~~l----~~------g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
.++.+|..|+..+ .. .+..++..+||||||+++...+.... ....++|+|+|+++|..|+.+.|....
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 4789999999884 22 35899999999999999877665432 456799999999999999999998744
No 105
>KOG0329|consensus
Probab=98.41 E-value=1.9e-07 Score=87.57 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHHHHHHHHHHHHhcC----C--c
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSPIKALSNQKYRDFRETFQ----D--V 264 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~PtraLa~Q~~~~l~~~f~----~--v 264 (333)
.|...|.++||...-|.+++..|..|-|||.+|.++-++.+.+ ...+++++.||+||-|+..++.+ |+ + +
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~r-fskymP~vkv 142 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYER-FSKYMPSVKV 142 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHH-HHhhCCCceE
Confidence 7999999999999999999999999999999999998877643 34688899999999999877633 54 3 7
Q ss_pred EEEeCCCCCCCCc-------ceEEecc---------------CcceEecccccccc
Q psy2760 265 GLIDDLPPVFPDV-------EKLLEDL---------------NIGGLDELSIHDFN 298 (333)
Q Consensus 265 glltGd~~~~~~a-------~ili~t~---------------~i~liViDe~H~~~ 298 (333)
.++.||..+.... .+.+.|+ ++-.+++||+.+.-
T Consensus 143 aVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 8899999887654 3555555 45677888887553
No 106
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.40 E-value=1.4e-06 Score=94.43 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
+|+.++-|.+.... +..+.++++.|+||+|||++|++|++... .+.++++.+||++|++|+.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHH
Confidence 47899999996655 46788999999999999999999987643 4688999999999999995
No 107
>KOG0351|consensus
Probab=98.39 E-value=2.7e-07 Score=100.40 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=84.5
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltG 269 (333)
|+. .+++-|.+||...+.|++++|..|||+||+++|.+|.+.. ++-.|+|+|..+|.+.+...+....=....++|
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s 336 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKGIPACFLSS 336 (941)
T ss_pred hccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcCcceeeccc
Confidence 444 7899999999999999999999999999999999987532 347889999999999999988443323455666
Q ss_pred CCCCCC-------------CcceEEecc-----------------C---cceEeccccccccccCcCccc
Q psy2760 270 LPPVFP-------------DVEKLLEDL-----------------N---IGGLDELSIHDFNKHLKFWKP 306 (333)
Q Consensus 270 d~~~~~-------------~a~ili~t~-----------------~---i~liViDe~H~~~~~~R~~~~ 306 (333)
++.... .-.++..|+ . +.++|+||+|.+...+..+|.
T Consensus 337 ~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp 406 (941)
T KOG0351|consen 337 IQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRP 406 (941)
T ss_pred cccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccH
Confidence 655421 112232232 2 789999999998877655554
No 108
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.38 E-value=9.4e-07 Score=92.95 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=47.5
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
+.+++.+++.||||+|||++|++|++.... .+.+++|++||++|+.|+.+.+...
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHH
Confidence 477889999999999999999999875433 4789999999999999999877643
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=7.6e-07 Score=95.66 Aligned_cols=92 Identities=14% Similarity=0.011 Sum_probs=71.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
++..+++.|.-..-.+..|+ +..+.||+|||+++.+|++.....|..+-+++||..||.|.++.+...|.. +++
T Consensus 78 lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~ 155 (830)
T PRK12904 78 LGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGV 155 (830)
T ss_pred hCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 44567888887777777775 889999999999999998633335667889999999999999999887763 788
Q ss_pred EeCCCCCCC-----CcceEEecc
Q psy2760 267 IDDLPPVFP-----DVEKLLEDL 284 (333)
Q Consensus 267 ltGd~~~~~-----~a~ili~t~ 284 (333)
++|+.+... ...+++.|+
T Consensus 156 i~~~~~~~er~~~y~~dI~ygT~ 178 (830)
T PRK12904 156 ILSGMSPEERREAYAADITYGTN 178 (830)
T ss_pred EcCCCCHHHHHHhcCCCeEEECC
Confidence 888876542 235666665
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.33 E-value=1.3e-06 Score=93.71 Aligned_cols=70 Identities=26% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHH---cCC-cEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 194 ELDVFQKQAIIKLE---EHN-HVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~---~g~-~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
...+.|..++..+. ... .+++.||||+|||++++........ ...|++|+.|+|++++++++++++.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 45888999988852 334 7889999999999999987774433 4789999999999999999999987664
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.33 E-value=1.9e-06 Score=91.40 Aligned_cols=102 Identities=21% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHH----Hc-CCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcCC---
Q psy2760 194 ELDVFQKQAIIKL----EE-HNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD--- 263 (333)
Q Consensus 194 ~l~~~Q~~ai~~l----~~-g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~~f~~--- 263 (333)
.++.+|..||..+ .. .+.+|+++.||+|||..++.-|....+ .-+|+||++-+++|+.|-+..|...++.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccc
Confidence 6899999999884 33 346899999999999998876665443 3479999999999999999999886664
Q ss_pred cEEEeCCCCCCCCcceEEecc--------------------CcceEecccccc
Q psy2760 264 VGLIDDLPPVFPDVEKLLEDL--------------------NIGGLDELSIHD 296 (333)
Q Consensus 264 vglltGd~~~~~~a~ili~t~--------------------~i~liViDe~H~ 296 (333)
+..+++- ......++-++|. ...+||+||+|.
T Consensus 245 ~n~i~~~-~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 245 MNKIEDK-KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred eeeeecc-cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh
Confidence 3333322 2222223333332 367899999995
No 112
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.28 E-value=2.7e-07 Score=79.94 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=68.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCC--CCCCCcceEEecc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLP--PVFPDVEKLLEDL 284 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~--~~~~~a~ili~t~ 284 (333)
.|+--++-.++|+|||.-.+-.++ .++..+.|+|++.|||.++..+.+.++.. ++..-+.-. ......-+.+++.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~--~~~~~t~~~~~~~~g~~~i~vMc~ 80 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL--PVRFHTNARMRTHFGSSIIDVMCH 80 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS--SEEEESTTSS----SSSSEEEEEH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC--CcccCceeeeccccCCCccccccc
Confidence 355668899999999997666554 67889999999999999999999998642 122211100 1122233444432
Q ss_pred --------------CcceEeccccccccccC---cCcccccchhhhhhheeccCcc
Q psy2760 285 --------------NIGGLDELSIHDFNKHL---KFWKPKVQLDDLFDWTMASDAT 323 (333)
Q Consensus 285 --------------~i~liViDe~H~~~~~~---R~~~~~~~l~~l~~l~~~~d~~ 323 (333)
+..++|+||+|.-+..+ |+|-...+..-..+++.+++.|
T Consensus 81 at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 81 ATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 67889999999876553 6655544333335667777665
No 113
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.20 E-value=6.8e-06 Score=90.32 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHH----HHHHhcC
Q psy2760 192 PFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYR----DFRETFQ 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~ral~l~PtraLa~Q~~~----~l~~~f~ 262 (333)
.|++++-|.+.+.. +..++++++.||||+|||++|++|.+. +...+.+++|-++|++|.+|+.. .+++.++
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~ 334 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKIFP 334 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcC
Confidence 46899999997766 367889999999999999999998874 45578999999999999999875 3455443
No 114
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.18 E-value=1e-05 Score=88.76 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEE
Q psy2760 193 FELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD-VGLI 267 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgll 267 (333)
..|.|||..++..+. ....++++-..|-|||.-+.+.+...+. ...++|+|+|. .|..|+..++.++|.- +.++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 469999999987763 3347899999999999998765543333 33689999998 8999999999888863 5555
Q ss_pred eCCCC---------CCCCcceEEecc----------------CcceEeccccccccc----cCcCcccccchhhhh-hhe
Q psy2760 268 DDLPP---------VFPDVEKLLEDL----------------NIGGLDELSIHDFNK----HLKFWKPKVQLDDLF-DWT 317 (333)
Q Consensus 268 tGd~~---------~~~~a~ili~t~----------------~i~liViDe~H~~~~----~~R~~~~~~~l~~l~-~l~ 317 (333)
.++.. .-....++|++. ...++|+||+|++.. +++.|+....+.+.+ ..+
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~L 309 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVL 309 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEE
Confidence 43321 111234555533 347899999999862 233333222222222 256
Q ss_pred eccCcch
Q psy2760 318 MASDATT 324 (333)
Q Consensus 318 ~~~d~~~ 324 (333)
+.+++|.
T Consensus 310 LLTATP~ 316 (956)
T PRK04914 310 LLTATPE 316 (956)
T ss_pred EEEcCcc
Confidence 6777764
No 115
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.18 E-value=6.2e-06 Score=77.12 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHh--cCC---CeEEEEcccHHHHHHHHHHHHHhcC--C--cEEEeCCC-------
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQ--NHK---TRTIYTSPIKALSNQKYRDFRETFQ--D--VGLIDDLP------- 271 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l--~~g---~ral~l~PtraLa~Q~~~~l~~~f~--~--vglltGd~------- 271 (333)
..+.++++-..|+|||..++..+.... .+. .++|+|+|. ++..|+.+++.+.+. . +..+.|+.
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccccc
Confidence 446889999999999999887765322 122 259999999 888999999988773 2 56666665
Q ss_pred CCCCCcceEEecc------------------CcceEecccccccc
Q psy2760 272 PVFPDVEKLLEDL------------------NIGGLDELSIHDFN 298 (333)
Q Consensus 272 ~~~~~a~ili~t~------------------~i~liViDe~H~~~ 298 (333)
.......+++.+. +..++|+||.|.+.
T Consensus 103 ~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 103 NQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp SSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred cccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 2233345666654 35669999999994
No 116
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.06 E-value=2.2e-05 Score=88.08 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCC--eEEEEcc----cHHHHHHHHHHHHHhcCC-cEEE
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKT--RTIYTSP----IKALSNQKYRDFRETFQD-VGLI 267 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~--ral~l~P----traLa~Q~~~~l~~~f~~-vgll 267 (333)
+.+-.+.+..+..+..++++|+||||||. .+|.+ .....+. ++++.-| +++||.++.+++...++. ||.-
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 44444555667778888999999999999 46643 3333332 3344446 578888888888765654 4442
Q ss_pred e-CCCCCCCCcceEEecc--------------CcceEeccccccccccCcCcc--cccchh---hhhhheeccCcchhhh
Q psy2760 268 D-DLPPVFPDVEKLLEDL--------------NIGGLDELSIHDFNKHLKFWK--PKVQLD---DLFDWTMASDATTLEI 327 (333)
Q Consensus 268 t-Gd~~~~~~a~ili~t~--------------~i~liViDe~H~~~~~~R~~~--~~~~l~---~l~~l~~~~d~~~~e~ 327 (333)
+ .+.+......++++|. ++.++|+||+|...-.. ++. ....++ ...+++++|++-..|-
T Consensus 154 vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~-DfLLg~Lk~lL~~rpdlKvILmSATid~e~ 232 (1294)
T PRK11131 154 VRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI-DFILGYLKELLPRRPDLKVIITSATIDPER 232 (1294)
T ss_pred ecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCcccccccc-chHHHHHHHhhhcCCCceEEEeeCCCCHHH
Confidence 2 1223334556777775 56789999999522111 110 011111 1246788887765554
Q ss_pred h
Q psy2760 328 F 328 (333)
Q Consensus 328 ~ 328 (333)
|
T Consensus 233 f 233 (1294)
T PRK11131 233 F 233 (1294)
T ss_pred H
Confidence 3
No 117
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=1.1e-05 Score=86.15 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=60.5
Q ss_pred cCCCCC-CHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CC--CeEEEEcccHHHHHHHHHHHHH
Q psy2760 190 TWPFEL-DVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HK--TRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 190 ~~~f~l-~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g--~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|||.+ +|.|.+.+.. +..+.++++.+|||+|||++.+.+.+.... .+ .+++|.+.|..-..|..+++++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 489965 9999998877 478899999999999999999998885433 33 7999999999999999999987
No 118
>KOG0353|consensus
Probab=98.05 E-value=1.5e-05 Score=78.50 Aligned_cols=111 Identities=11% Similarity=0.110 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPV 273 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~ 273 (333)
.++|.|..+|.....|+++++..|||.||+++|.+|.+. ..+-+++++|..+|+..+.-+++..--+...+....+.
T Consensus 94 kfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---adg~alvi~plislmedqil~lkqlgi~as~lnanssk 170 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---ADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSK 170 (695)
T ss_pred hcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---cCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccH
Confidence 689999999999999999999999999999999999764 34558999999999999998987732222223222221
Q ss_pred -------------CCCcceEEecc--------------------CcceEeccccccccccCcCcccc
Q psy2760 274 -------------FPDVEKLLEDL--------------------NIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 274 -------------~~~a~ili~t~--------------------~i~liViDe~H~~~~~~R~~~~~ 307 (333)
+..-+++..|+ -+.++-+||.|.....+..++..
T Consensus 171 e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~d 237 (695)
T KOG0353|consen 171 EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPD 237 (695)
T ss_pred HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcc
Confidence 11112333333 24567789999888777666664
No 119
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.05 E-value=1.6e-05 Score=71.17 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHcCCc-EEEEcCCCCcHHHHHHHHHHHH--------hcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEEHNH-VFVTAHTSAGKTVIAEYAIALS--------QNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~-vlv~apTGSGKTl~~~l~il~~--------l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.+++.|.+|+..++.... .+|.||.|+|||.+....+... ...+.++++++|+.+-++++.+++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999988887 9999999999996655544444 56788999999999999999999977
No 120
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.03 E-value=1.4e-05 Score=84.25 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
+|++++.|.+++..+ ..++.+++.||||+|||++++.|++ .+...+.++++.++|++|-.|..++...
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 459999999998763 5666799999999999999999887 4556678999999999999999977544
No 121
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.03 E-value=1.7e-05 Score=85.64 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=70.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cE
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VG 265 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vg 265 (333)
.++..+++.|.-.--.+.+|+ +..++||.|||++|.+|++.....|..+.+|+|++.||.|..+.+...|.. ||
T Consensus 78 ~lgm~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~ 155 (908)
T PRK13107 78 VFEMRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVG 155 (908)
T ss_pred HhCCCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 445567778876655566665 779999999999999999877777888999999999999999888776653 67
Q ss_pred EEeCCCCCCC-----CcceEEecc
Q psy2760 266 LIDDLPPVFP-----DVEKLLEDL 284 (333)
Q Consensus 266 lltGd~~~~~-----~a~ili~t~ 284 (333)
.++|+..... ...++..|.
T Consensus 156 ~i~~~~~~~~r~~~Y~~dI~YgT~ 179 (908)
T PRK13107 156 INVAGLGQQEKKAAYNADITYGTN 179 (908)
T ss_pred EecCCCCHHHHHhcCCCCeEEeCC
Confidence 7777765422 345666665
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.02 E-value=1.9e-05 Score=85.48 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEE
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLI 267 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgll 267 (333)
+..++..|...--.+..|+ +....||+|||+++.+|++.....|..+.+++|+--||.|-++.+...|.. ||++
T Consensus 80 Gm~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i 157 (913)
T PRK13103 80 GMRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIV 157 (913)
T ss_pred CCCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 4467788876666666664 668999999999999999888888999999999999999999999888764 7778
Q ss_pred eCCCCCCC-----CcceEEecc----------------------CcceEecccccccc
Q psy2760 268 DDLPPVFP-----DVEKLLEDL----------------------NIGGLDELSIHDFN 298 (333)
Q Consensus 268 tGd~~~~~-----~a~ili~t~----------------------~i~liViDe~H~~~ 298 (333)
+|+.+... ...++..|. +..+.++||.|.+-
T Consensus 158 ~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 158 TPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 88765432 234555554 45668888888764
No 123
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.00 E-value=1.7e-05 Score=84.67 Aligned_cols=63 Identities=22% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHH----Hc-----CCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKL----EE-----HNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l----~~-----g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
+|+.++-|.+.+..+ .. ++.+++-||||.|||++|++|.+ .+...+.++||-+.|++|-+|+.
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 378999999987764 33 47899999999999999999876 45668899999999999999997
No 124
>KOG0952|consensus
Probab=97.97 E-value=1.9e-06 Score=93.12 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 194 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 194 ~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
.++|.|.+.|..+ ....++++.+|||||||++|..+++..+ .++.+++|++|.++|+.....+|.+++.. ++-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 3566777766664 5667899999999999999999999765 45789999999999999999999887753 566
Q ss_pred EeCCCCCCCCcceEEeccCcceEeccccccccccCcCcccc
Q psy2760 267 IDDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 267 ltGd~~~~~~a~ili~t~~i~liViDe~H~~~~~~R~~~~~ 307 (333)
++|+...+..+ +.- .-+++..+|.|++..|.|...
T Consensus 1007 ~tgd~~pd~~~---v~~---~~~~ittpek~dgi~Rsw~~r 1041 (1230)
T KOG0952|consen 1007 LTGDVTPDVKA---VRE---ADIVITTPEKWDGISRSWQTR 1041 (1230)
T ss_pred ccCccCCChhh---eec---CceEEcccccccCccccccch
Confidence 78877655322 111 112244455555555555443
No 125
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.94 E-value=2.5e-05 Score=83.85 Aligned_cols=83 Identities=20% Similarity=0.096 Sum_probs=70.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cE
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VG 265 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vg 265 (333)
.++..+++.|.-+.-.+..|+ +....||+|||+++.+|+......|..+-+++|+--||.|-++.+...|.. ||
T Consensus 76 ~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg 153 (796)
T PRK12906 76 VLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVG 153 (796)
T ss_pred HhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEE
Confidence 345568888888877778887 889999999999999999888888999999999999999999998887763 78
Q ss_pred EEeCCCCCC
Q psy2760 266 LIDDLPPVF 274 (333)
Q Consensus 266 lltGd~~~~ 274 (333)
+++|+.+..
T Consensus 154 ~i~~~~~~~ 162 (796)
T PRK12906 154 LNLNSMSPD 162 (796)
T ss_pred EeCCCCCHH
Confidence 888876543
No 126
>PF13245 AAA_19: Part of AAA domain
Probab=97.94 E-value=3.4e-05 Score=59.65 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~----g~ral~l~PtraLa~Q~~~~l 257 (333)
+.-++|.||.|||||......+...... +.++++++|++..++++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4445669999999997776666544432 789999999999999998887
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.80 E-value=8.3e-05 Score=79.01 Aligned_cols=82 Identities=17% Similarity=0.103 Sum_probs=69.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cE
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VG 265 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vg 265 (333)
.++..++..|.-....+++|+ +....||+|||+++.+|+......|..+.+++|+--||.|-++.+...|.. +|
T Consensus 74 ~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg 151 (764)
T PRK12326 74 TLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVG 151 (764)
T ss_pred HcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 345578899988888888885 669999999999999998877788999999999999999999998887763 78
Q ss_pred EEeCCCCC
Q psy2760 266 LIDDLPPV 273 (333)
Q Consensus 266 lltGd~~~ 273 (333)
+++++.+.
T Consensus 152 ~i~~~~~~ 159 (764)
T PRK12326 152 WITEESTP 159 (764)
T ss_pred EECCCCCH
Confidence 78877654
No 128
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.68 E-value=0.00011 Score=68.93 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 195 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 195 l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~----g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
|++-|.+++.. ...+++|.|+.|||||.+...-++..+.. ..+++++++|++.+.++..++.+.+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 57789988877 67899999999999999988877655433 3679999999999999999998754
No 129
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.57 E-value=0.00029 Score=79.36 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCC--CeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeC----
Q psy2760 198 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHK--TRTIYTSPIKALSNQKYRDFRETFQD-VGLIDD---- 269 (333)
Q Consensus 198 ~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g--~ral~l~PtraLa~Q~~~~l~~~f~~-vglltG---- 269 (333)
+..+.+..+..+..++++|+||||||.. +|.+. ....+ .++++.-|.|--|..+.+++.+.++. +|...|
T Consensus 71 ~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR 148 (1283)
T TIGR01967 71 KREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVR 148 (1283)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEc
Confidence 3345556677788899999999999994 45442 22222 35555678887777777777666653 444333
Q ss_pred -CCCCCCCcceEEecc--------------CcceEecccccc
Q psy2760 270 -LPPVFPDVEKLLEDL--------------NIGGLDELSIHD 296 (333)
Q Consensus 270 -d~~~~~~a~ili~t~--------------~i~liViDe~H~ 296 (333)
+........+.++|. ++.++|+||+|.
T Consensus 149 ~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHE 190 (1283)
T TIGR01967 149 FHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHE 190 (1283)
T ss_pred CCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcch
Confidence 333344455666664 578899999994
No 130
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.57 E-value=0.00026 Score=78.37 Aligned_cols=106 Identities=9% Similarity=0.032 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHHHHHHHHHH--h-cCCCeEEEEcccHHHHHHHHHHHHHhcCC--c
Q psy2760 194 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALS--Q-NHKTRTIYTSPIKALSNQKYRDFRETFQD--V 264 (333)
Q Consensus 194 ~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~~~l~il~~--l-~~g~ral~l~PtraLa~Q~~~~l~~~f~~--v 264 (333)
.|++||.+++.-+ ..|.+.+++=..|.|||+.++..+... . ....++|+|+|. +|..|+.+++.+.++. +
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 6899999998765 467889999999999999765544322 2 223578999997 7778899999886654 5
Q ss_pred EEEeCCCCC----------CCCcceEEecc-------------CcceEecccccccccc
Q psy2760 265 GLIDDLPPV----------FPDVEKLLEDL-------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 265 glltGd~~~----------~~~a~ili~t~-------------~i~liViDe~H~~~~~ 300 (333)
..++|+... .....+++.+. ...++|+||+|.+...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~ 306 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNE 306 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCH
Confidence 666775421 11234555543 3468999999998764
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00017 Score=73.90 Aligned_cols=69 Identities=32% Similarity=0.391 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHH----H-cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 192 PFELDVFQKQAIIKL----E-EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l----~-~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+|.|...|-+||..+ . ..+.-.+-|.||||||....-.|... +..+++++|.+.||.|.+.+|++.|++
T Consensus 10 ~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~---~rPtLV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 10 PFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV---QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred CCCCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh---CCCeEEEecchhHHHHHHHHHHHhCcC
Confidence 567888899999885 2 33577889999999998766555433 345899999999999999999999985
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=97.42 E-value=0.00073 Score=72.70 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHHHHcC----CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 192 PFELDVFQKQAIIKLEEH----NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g----~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
|..|+|||++|+....+| ..-=+....|.|||..++--... +. ..++||++|..+|..|.++.|...
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEa-la-~~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEA-LA-AARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHH-Hh-hhheEeecchHHHHHHHHHHHhhc
Confidence 558999999999996332 22233445689999998764432 22 278999999999999999999764
No 133
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.36 E-value=0.00072 Score=71.69 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g-~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.+++.|++|+..+... ..+++.||+|+|||.+....+......|.++++++||..-++++.+++.+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 6899999999997655 688999999999998877666666677889999999999999999999763
No 134
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.25 E-value=0.0013 Score=59.45 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHH-cC-CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 195 LDVFQKQAIIKLE-EH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 195 l~~~Q~~ai~~l~-~g-~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
|++-|++|+..+. ++ +-+++.||.|+|||.+...........+.++++++||...+..+.+..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh
Confidence 7889999999984 44 357788999999998754433333456789999999988888866653
No 135
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.15 E-value=0.00097 Score=71.65 Aligned_cols=64 Identities=23% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHH
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKY 254 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~PtraLa~Q~~ 254 (333)
.++.+++.|++|+..+..++.+++.|+.|+|||.+....+......+ .+++.++||-.-|..+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 45689999999999998888999999999999987643332222234 67888999976665444
No 136
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0031 Score=68.57 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cEE-Ee
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGL-ID 268 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vgl-lt 268 (333)
+....+.+..+.++.-++++|+||||||.-.=.-++.. ...+.++.+.-|.|-=|..+.+++.+.++. ||- +.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 44455566667888999999999999998654444432 244557777789988788888888777764 333 23
Q ss_pred CCCCCCCCcceEEecc--------------CcceEeccccccccccC---cCccccc-chhh-hhhheeccCcchhhhhh
Q psy2760 269 DLPPVFPDVEKLLEDL--------------NIGGLDELSIHDFNKHL---KFWKPKV-QLDD-LFDWTMASDATTLEIFT 329 (333)
Q Consensus 269 Gd~~~~~~a~ili~t~--------------~i~liViDe~H~~~~~~---R~~~~~~-~l~~-l~~l~~~~d~~~~e~~~ 329 (333)
.+.....+.++-++|- .+.++++||+|.-.-.. =|.-..+ ...+ -++++++|++=--|-|+
T Consensus 132 fe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs 211 (845)
T COG1643 132 FESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFS 211 (845)
T ss_pred eeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHH
Confidence 4545555566666653 57889999999643221 0111111 0111 26778887764444443
No 137
>KOG1123|consensus
Probab=97.09 E-value=0.00061 Score=69.48 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHcC---CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cE
Q psy2760 194 ELDVFQKQAIIKLEEH---NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VG 265 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g---~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vg 265 (333)
.++|+|...+..+..+ ++-++..|.|+|||++..-++. .-..++|+++..---+.|+..+|.. +.. ++
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---tikK~clvLcts~VSVeQWkqQfk~-wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---TIKKSCLVLCTSAVSVEQWKQQFKQ-WSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---eecccEEEEecCccCHHHHHHHHHh-hcccCccceE
Confidence 6799999999998433 5789999999999998766542 2245688888888888998888855 542 89
Q ss_pred EEeCCCCCCCC--cceEEecc-----------------------CcceEeccccccccc
Q psy2760 266 LIDDLPPVFPD--VEKLLEDL-----------------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 266 lltGd~~~~~~--a~ili~t~-----------------------~i~liViDe~H~~~~ 299 (333)
.+|++.+.... +.++|.|. .-++++.||.|-+..
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA 436 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA 436 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH
Confidence 99999876433 44566553 357788888887643
No 138
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.06 E-value=0.001 Score=65.26 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=58.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHHHHHHhc-CC-c-EEEeCCCC-CCCCcceEEecc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYRDFRETF-QD-V-GLIDDLPP-VFPDVEKLLEDL 284 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~--l~~g~ral~l~PtraLa~Q~~~~l~~~f-~~-v-glltGd~~-~~~~a~ili~t~ 284 (333)
-++|.|..|||||++++..+... ...+.+++|+++..+|...+.+.+.+.. .. . ..+..-.. ++.-........
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 57899999999999998766655 5678899999999999999988887654 11 0 00000000 000000001123
Q ss_pred CcceEecccccccccc
Q psy2760 285 NIGGLDELSIHDFNKH 300 (333)
Q Consensus 285 ~i~liViDe~H~~~~~ 300 (333)
...++++||+|.+...
T Consensus 83 ~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTK 98 (352)
T ss_pred cCCEEEEehhHhhhhc
Confidence 5678899999998773
No 139
>KOG1803|consensus
Probab=97.03 E-value=0.0015 Score=67.78 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2760 191 WPFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 258 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g-~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~ 258 (333)
++..+++.|++|+..+... .-.++.||+|.|||.....-|.+....+.++++++||+.-++-+.+++.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4558999999999997655 5668899999999999888888899999999999999998888888653
No 140
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.84 E-value=0.0049 Score=58.70 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=60.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcE
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVG 265 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vg 265 (333)
..++.|++.|..+.-.+..|+ ++...||-|||+++.++.....-.|..|-+++...-||..=++.+...|. .+|
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 345578888988887787776 88999999999999887765555788899999999999888877766554 278
Q ss_pred EEeCCCCC
Q psy2760 266 LIDDLPPV 273 (333)
Q Consensus 266 lltGd~~~ 273 (333)
..+++.+.
T Consensus 151 ~~~~~~~~ 158 (266)
T PF07517_consen 151 IITSDMSS 158 (266)
T ss_dssp EEETTTEH
T ss_pred cCccccCH
Confidence 88877653
No 141
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.72 E-value=0.0048 Score=61.02 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHH------HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHH--HHHHHHhcCCcEE
Q psy2760 195 LDVFQKQAIIKL------EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK--YRDFRETFQDVGL 266 (333)
Q Consensus 195 l~~~Q~~ai~~l------~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~--~~~l~~~f~~vgl 266 (333)
|++-|++++..+ ..+.++++.|+-|+|||.+.-..+-.....+..+++++||-.=|.-+ -..+...|+ +++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC-ccc
Confidence 788999998887 78899999999999999887655444445567899999996555444 234444443 111
Q ss_pred EeCCCC---CCCCcceEEeccCcceEecccccccccc
Q psy2760 267 IDDLPP---VFPDVEKLLEDLNIGGLDELSIHDFNKH 300 (333)
Q Consensus 267 ltGd~~---~~~~a~ili~t~~i~liViDe~H~~~~~ 300 (333)
-..... ........-.-....++++||+-++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~ 117 (364)
T PF05970_consen 81 NNNEKSQCKISKNSRLRERLRKADVLIIDEISMVSAD 117 (364)
T ss_pred cccccccccccccchhhhhhhhheeeecccccchhHH
Confidence 111100 0000011111125678889999987644
No 142
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.62 E-value=0.0081 Score=64.00 Aligned_cols=69 Identities=32% Similarity=0.412 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHH----HcC-CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 192 PFELDVFQKQAIIKL----EEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l----~~g-~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
||.|...|.++|..+ ..| ++.++.|.||||||+.....+. . .+..+|+|+|.+.+|.|++++|+..|++
T Consensus 7 ~~~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~-~--~~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 7 PFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIA-Q--VNRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHH-H--hCCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 678999999999886 233 3677999999999988654332 2 3456999999999999999999998775
No 143
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.56 E-value=0.0044 Score=56.84 Aligned_cols=54 Identities=26% Similarity=0.182 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEcccHH
Q psy2760 195 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKA 248 (333)
Q Consensus 195 l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~Ptra 248 (333)
.+..|+.++..+.....+++.||.|+|||+.+..+.+..+..+ .+++|+-|..+
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 5889999999999888999999999999999999887655444 47888877754
No 144
>KOG0920|consensus
Probab=96.49 E-value=0.017 Score=63.22 Aligned_cols=135 Identities=14% Similarity=0.094 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHH---HhcCCCeEEEEcccHHHHHHHHHHHHH-hcCC----cEEE
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL---SQNHKTRTIYTSPIKALSNQKYRDFRE-TFQD----VGLI 267 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~---~l~~g~ral~l~PtraLa~Q~~~~l~~-~f~~----vgll 267 (333)
+..+.+.+..+.++..++++|.||+|||.=.---|+. ......++++.-|.|--|-.+++++.. ++.. ||--
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYq 254 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEE
Confidence 6778888888999999999999999999864443442 122445677778998888888877644 3322 3332
Q ss_pred eC-CCCCCCCcceEEecc--------------CcceEeccccccccccCcCccccc----chhhhhhheeccCcchhhhh
Q psy2760 268 DD-LPPVFPDVEKLLEDL--------------NIGGLDELSIHDFNKHLKFWKPKV----QLDDLFDWTMASDATTLEIF 328 (333)
Q Consensus 268 tG-d~~~~~~a~ili~t~--------------~i~liViDe~H~~~~~~R~~~~~~----~l~~l~~l~~~~d~~~~e~~ 328 (333)
.+ +.....+..++.+|+ ++.++|+||+|--+..+=+.-.-. ...--++++++|++--.|.|
T Consensus 255 vrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~f 334 (924)
T KOG0920|consen 255 VRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELF 334 (924)
T ss_pred EeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHH
Confidence 22 222233356666665 678899999998665542221111 01123678899998888887
Q ss_pred hc
Q psy2760 329 TY 330 (333)
Q Consensus 329 ~~ 330 (333)
+.
T Consensus 335 s~ 336 (924)
T KOG0920|consen 335 SD 336 (924)
T ss_pred HH
Confidence 64
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.44 E-value=0.0055 Score=66.54 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
.+..+++.|.-..-.+..| -+....||.|||+++.+|+......|..|-+++++..||.+-++.+...|.- ||.
T Consensus 73 lG~r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 73 LGLRHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred hCCCCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 3445777777665555544 6789999999999999988755557889999999999999988777665542 677
Q ss_pred EeCCCCC
Q psy2760 267 IDDLPPV 273 (333)
Q Consensus 267 ltGd~~~ 273 (333)
+.++.+.
T Consensus 151 i~~~~~~ 157 (870)
T CHL00122 151 IQEGMSS 157 (870)
T ss_pred eCCCCCh
Confidence 7666554
No 146
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.39 E-value=0.013 Score=62.69 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
+.|++-|++|+.. ...+++|.|..|||||.+...-+.+.+. .+.++++++.|+..|..+.+++.++++
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4789999998863 3457899999999999998776654332 346899999999999999999988775
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.37 E-value=0.016 Score=63.20 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=62.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgl 266 (333)
.+..++..|...--.+..|+ +....||.|||+++.+|+......|..|-+|++..-||..=.+.+...+. .||.
T Consensus 82 lG~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred hCCCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 44567888877666666664 67999999999999999887777788899999999999887766655443 2777
Q ss_pred EeCCCCC
Q psy2760 267 IDDLPPV 273 (333)
Q Consensus 267 ltGd~~~ 273 (333)
+.++...
T Consensus 160 i~~~~~~ 166 (939)
T PRK12902 160 IQQDMSP 166 (939)
T ss_pred ECCCCCh
Confidence 7766554
No 148
>KOG0387|consensus
Probab=96.34 E-value=0.019 Score=61.50 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHH--HHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcCC--c
Q psy2760 194 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVI--AEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQD--V 264 (333)
Q Consensus 194 ~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~--~~l~il~~l-~~g~ral~l~PtraLa~Q~~~~l~~~f~~--v 264 (333)
.|.++|++.+.=+ .++.--++.=.-|-|||.- ++++.+.+. .--.++|+|+|. .+..|+..+|+.-++. |
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 6899999887664 4555667788889999953 334444333 333789999998 7889999999887776 6
Q ss_pred EEEeCCCCC--------------------CCCcceEEecc-------------CcceEeccccccccccCcCcccccchh
Q psy2760 265 GLIDDLPPV--------------------FPDVEKLLEDL-------------NIGGLDELSIHDFNKHLKFWKPKVQLD 311 (333)
Q Consensus 265 glltGd~~~--------------------~~~a~ili~t~-------------~i~liViDe~H~~~~~~R~~~~~~~l~ 311 (333)
.+++|..+. ..+..+++.|. .-.++|.||-|++..+.-.....|--+
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki 363 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKI 363 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhc
Confidence 666654331 11223555543 236789999999977653333333223
Q ss_pred hhhhheeccCcc
Q psy2760 312 DLFDWTMASDAT 323 (333)
Q Consensus 312 ~l~~l~~~~d~~ 323 (333)
+....++++.+|
T Consensus 364 ~T~~RiILSGTP 375 (923)
T KOG0387|consen 364 RTVHRIILSGTP 375 (923)
T ss_pred cccceEEeeCcc
Confidence 344455555544
No 149
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.28 E-value=0.0078 Score=63.67 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHH--HHHHHhc--CCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 195 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY--AIALSQN--HKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 195 l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l--~il~~l~--~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
..++|+.|+.....++..++.|++|+|||.+... ..+.... ...++++++||.-=|..+.+.+..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3589999999989999999999999999987543 2232222 235788889997777777766543
No 150
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.26 E-value=0.017 Score=46.79 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
++.+++.||+|+|||..+...+......+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 77899999999999987766554444445667766544
No 151
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.17 E-value=0.026 Score=59.47 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH--HHHhcC---CCeEEEEcccHHHHHHHHHHHHH
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNH---KTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~i--l~~l~~---g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
..+|+.|+..+..++.+++.|+.|+|||.+....+ +....+ +.++++++||--=|..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 37999999999999999999999999998754332 322222 25799999997666666655543
No 152
>PRK06526 transposase; Provisional
Probab=96.17 E-value=0.011 Score=55.91 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=34.1
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
..+.+++++||+|+|||..+..........|.+++|+. ...|++++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t-~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT-AAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh-HHHHHHHHH
Confidence 56789999999999999988765555556777777754 344555544
No 153
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.15 E-value=0.013 Score=62.72 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|++-|++|+.. ...+++|.|+.|||||.+...-+.+.+. +..+++.++.|+.-|.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 479999998864 3568899999999999998877765543 235799999999999999999987654
No 154
>KOG1802|consensus
Probab=96.15 E-value=0.015 Score=61.27 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.++.-|..|...+++..--++.||.|.|||++..--+.+ ....+.++|+++|..--++|+.+.+.+.
T Consensus 410 kLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 799999999999999999999999999999987654443 3356788999999999999999988763
No 155
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.11 E-value=0.024 Score=62.58 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=38.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l 257 (333)
.++.+.++||+|||.+|+..|+.... .-.+.|++||+.|.-..+..-+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l 109 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFI 109 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHh
Confidence 48899999999999999998874432 3467999999999887776443
No 156
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.06 E-value=0.023 Score=60.59 Aligned_cols=70 Identities=27% Similarity=0.316 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHHHH----cC-CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 191 WPFELDVFQKQAIIKLE----EH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~----~g-~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
-+|.|+..|..++..+. .+ ++.++.|.+|||||++... ++.. .+..+|+|+|+..+|.|+++.|+..++.
T Consensus 9 ~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~--~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 9 SPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIAR--LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred cCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHH--hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 36799999999999862 33 2677999999999988543 2222 3567999999999999999999887765
No 157
>PHA02533 17 large terminase protein; Provisional
Probab=95.97 E-value=0.05 Score=56.71 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=57.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH-HH-hcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LS-QNHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il-~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
..||.|+++|+..+..+..++..++..+=..|||.+....++ .+ ...+..+++++|++.-|..+++.++..+
T Consensus 55 ~~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 55 TIKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred ceecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 468999999999998876677778888999999998765333 33 3567789999999999999998886543
No 158
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.76 E-value=0.03 Score=63.80 Aligned_cols=66 Identities=21% Similarity=0.175 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 195 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK---TRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 195 l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g---~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
+++-|.+||. ..+++++|.|..|||||.+..--++..+..+ .++++++=|++-|.++..++++.+.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 6889999997 4688999999999999999877666554333 3599999999999999988877654
No 159
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.72 E-value=0.029 Score=60.41 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|++-|++|+.. ...+++|.|..|||||.+...-+.+.+. +..+++.++-|+.-|.++.+++.+..+
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 589999998864 3468999999999999998776665443 235799999999999999999988654
No 160
>KOG0926|consensus
Probab=95.59 E-value=0.048 Score=58.75 Aligned_cols=132 Identities=13% Similarity=0.046 Sum_probs=74.5
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHH---HHHHHHHHh---cCCCeEEEEcccHHHHHHHHHHHHHhcC---C-cEEE-eC
Q psy2760 201 QAIIKLEEHNHVFVTAHTSAGKTVI---AEYAIALSQ---NHKTRTIYTSPIKALSNQKYRDFRETFQ---D-VGLI-DD 269 (333)
Q Consensus 201 ~ai~~l~~g~~vlv~apTGSGKTl~---~~l~il~~l---~~g~ral~l~PtraLa~Q~~~~l~~~f~---~-vgll-tG 269 (333)
+....+..+--++|||.||||||.- |++-+=.+. ..+.-+-+.-|.|--|-.+.++...-++ . |+-. .=
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 3445567888899999999999974 222111111 1133455567887666666655544333 2 4321 11
Q ss_pred CCCCCCCcceEEecc--------------CcceEeccccccccccC--------cCcccccc------hhhhhhheeccC
Q psy2760 270 LPPVFPDVEKLLEDL--------------NIGGLDELSIHDFNKHL--------KFWKPKVQ------LDDLFDWTMASD 321 (333)
Q Consensus 270 d~~~~~~a~ili~t~--------------~i~liViDe~H~~~~~~--------R~~~~~~~------l~~l~~l~~~~d 321 (333)
+..+.+...+..+|- ....|++||+|--+..+ |-.+...- -+.-.+|+++|+
T Consensus 343 d~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSA 422 (1172)
T KOG0926|consen 343 DGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSA 422 (1172)
T ss_pred ccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEee
Confidence 333444455556653 45778999999654333 22111111 122467999998
Q ss_pred cchhhhhhccc
Q psy2760 322 ATTLEIFTYNK 332 (333)
Q Consensus 322 ~~~~e~~~~~~ 332 (333)
+=-.+=|+-+|
T Consensus 423 TLRVsDFtenk 433 (1172)
T KOG0926|consen 423 TLRVSDFTENK 433 (1172)
T ss_pred eEEecccccCc
Confidence 87777776544
No 161
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.55 E-value=0.036 Score=58.80 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 195 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 195 l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
|++-|++++.. ...+++|.|+.|||||.+...-+...+. ...++++|+.|+.-|.++.+++.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899998764 3568999999999999998887765543 235789999999999999999987664
No 162
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.50 E-value=0.032 Score=59.96 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|++-|++|+.. ...+++|.|..|||||.+...-+...+. +..+++.++.|+.-|.++.+++.+..+
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 489999998864 3568999999999999998776665443 235799999999999999999988654
No 163
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.48 E-value=0.029 Score=51.92 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=40.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|..+++.||+|+|||..+..-+...+..|.+++|++ +-+-..|+.+++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 4789999999999999998877666667789999988 44566677666644
No 164
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.47 E-value=0.031 Score=48.76 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=36.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.+++.||+|+|||..+.--+......|.+++|++. .+...++.+++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~ 48 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAES 48 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHH
Confidence 36899999999999887766666677889999864 3556666666544
No 165
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.47 E-value=0.038 Score=46.21 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=29.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 250 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa 250 (333)
++++||+|+|||..+...+......+.+++|+.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 689999999999988766555555678888887654443
No 166
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.45 E-value=0.035 Score=54.17 Aligned_cols=54 Identities=26% Similarity=0.409 Sum_probs=37.2
Q ss_pred CCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHH---hcCCCeEEEEcccHHH
Q psy2760 195 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIKAL 249 (333)
Q Consensus 195 l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~---l~~g~ral~l~PtraL 249 (333)
+++.|.+.+.. +..+++++++|+||||||.... +++.. ..+..+++.+-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~-aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVN-AIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHhhhhcCCCceEEEEcCCCcc
Confidence 56778888776 4788999999999999996543 33322 2344566666555554
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.43 E-value=0.023 Score=45.37 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraL 249 (333)
+.++++.||+|+|||..+...+......+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 57899999999999998876554333333468888776543
No 168
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.42 E-value=0.041 Score=53.90 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHH
Q psy2760 195 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKAL 249 (333)
Q Consensus 195 l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~PtraL 249 (333)
+++.|.+.+..+ ..+.+++++|+||||||...- +++... ..+.|++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhcCCCCceEEEecCCccc
Confidence 567788777764 778899999999999998763 333332 234566655444444
No 169
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.36 E-value=0.065 Score=58.05 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHc-CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKLEE-HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~-g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
.+.+++-|++|+..+.. ++.+++.|+.|+|||.+.-..+......|.++++++||---+..+.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 46789999999999865 4678999999999998765543333345889999999966554443
No 170
>PRK10536 hypothetical protein; Provisional
Probab=95.35 E-value=0.047 Score=51.94 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCe-EEEEcccHH
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTR-TIYTSPIKA 248 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~r-al~l~Ptra 248 (333)
..+..|..++..+..+..+++.||+|+|||+.+....+..+ ....+ +++.-|+..
T Consensus 59 p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 59 ARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred CCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 45888999999888888999999999999999988776544 33334 444445543
No 171
>KOG0349|consensus
Probab=95.25 E-value=0.0033 Score=63.32 Aligned_cols=39 Identities=26% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL 232 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~ 232 (333)
-|+.+|.++||.++.|.+++..|.||||||-+|-+||++
T Consensus 24 lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilq 62 (725)
T KOG0349|consen 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 62 (725)
T ss_pred cccccccccccEEecCCcEEEEeccCCCCccceehhhHH
Confidence 589999999999999999999999999999999999984
No 172
>PRK08727 hypothetical protein; Validated
Probab=95.25 E-value=0.075 Score=49.20 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=30.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~ 255 (333)
..++++||+|+|||.............+.+++|+. ..++.....+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~~~~~~~ 86 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQAAAGRLRD 86 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHhhhhHHH
Confidence 45899999999999776654444455677888865 4444443333
No 173
>PRK08181 transposase; Validated
Probab=95.24 E-value=0.079 Score=50.54 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 195 LDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 195 l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
++..|..++.. +..+++++++||+|+|||..+......+...|.+++|+ +..+|+.++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHHHH
Confidence 45566655533 35788999999999999987765444445567777765 4566766654
No 174
>KOG0922|consensus
Probab=95.23 E-value=0.08 Score=55.83 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cEE--E
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIA-EYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGL--I 267 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~-~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vgl--l 267 (333)
+..-.+.+..+..+..+++.|.||||||.=- .+.........+++.+.-|.|-=|--+.++..+-.+. ||- .
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 4455667777888999999999999999742 1111122334445777789887666666666554442 322 2
Q ss_pred eCCCCCCCCcceEEecc--------------CcceEeccccccccccCcCcccccchhh----------hhhheeccCcc
Q psy2760 268 DDLPPVFPDVEKLLEDL--------------NIGGLDELSIHDFNKHLKFWKPKVQLDD----------LFDWTMASDAT 323 (333)
Q Consensus 268 tGd~~~~~~a~ili~t~--------------~i~liViDe~H~~~~~~R~~~~~~~l~~----------l~~l~~~~d~~ 323 (333)
.-+.. ....++..+|- ...++++||+|.-.-+ ..+ ++- -++++++|++=
T Consensus 133 Fed~t-s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~-----TDi-LlGlLKki~~~R~~LklIimSATl 205 (674)
T KOG0922|consen 133 FEDST-SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLH-----TDI-LLGLLKKILKKRPDLKLIIMSATL 205 (674)
T ss_pred ecccC-CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhH-----HHH-HHHHHHHHHhcCCCceEEEEeeee
Confidence 22222 22333333332 5688999999964332 222 111 15678887765
Q ss_pred hhhhhh
Q psy2760 324 TLEIFT 329 (333)
Q Consensus 324 ~~e~~~ 329 (333)
..|-|+
T Consensus 206 da~kfS 211 (674)
T KOG0922|consen 206 DAEKFS 211 (674)
T ss_pred cHHHHH
Confidence 555543
No 175
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.23 E-value=0.039 Score=49.22 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=32.3
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
..++++++.||+|+|||..+...+-.....|.+++|+ ++.+|..++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceecccc
Confidence 5678999999999999998776555566677778775 5556665543
No 176
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.14 E-value=0.07 Score=51.53 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHH
Q psy2760 195 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKAL 249 (333)
Q Consensus 195 l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~PtraL 249 (333)
+++.|.+.+..+ ..+++++++|+||||||...-. ++..+ ..+.|++.+=-+.+|
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhccCCCceEEEECCchhh
Confidence 456666666664 6778999999999999987643 33332 124567666666555
No 177
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.06 E-value=0.037 Score=50.39 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=37.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|..+++.|++|+|||..+..-+...+.. |.+++|++ +.+-..++.+.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s 69 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKS 69 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHH
Confidence 36789999999999999988777767777 88999987 33445666666653
No 178
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.02 E-value=0.065 Score=57.66 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~----g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|++-|++|+.. ...+++|.|..|||||.+...-+.+.+.. ..+++.++-|+.-|.++.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 489999999864 35689999999999999988877655432 25799999999999999999987654
No 179
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.86 E-value=0.09 Score=49.11 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHH---cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 193 FELDVFQKQAIIKLE---EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~---~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+-+++.|.+....+. .|.|.+...-.|.|||.+-.-.+...+.+|.+.+.++=-++|..|.++.++.++++
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~ 95 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGG 95 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 358999999998873 56899999999999999865544566777777555544568999999999999875
No 180
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.85 E-value=0.063 Score=50.24 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=42.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|+.+++.|++|||||..+...+......|.+++|++ +.+...++.+.+.. |+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs-~~e~~~~l~~~~~~-~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS-TEESPEELLENARS-FG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE-ecCCHHHHHHHHHH-cC
Confidence 4789999999999999998888777777788999876 55667777777755 54
No 181
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.75 E-value=0.059 Score=53.19 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 250 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa 250 (333)
+..+++++++||||||||... .+++.......+++.+=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCcccc
Confidence 478899999999999999875 34444455556666666666553
No 182
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.62 E-value=0.099 Score=46.50 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 195 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 195 l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+++.|.+.+.. +..|.+++++||||||||...-. ++.......+.+.+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a-L~~~i~~~~~~i~i 58 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA-LLAFIPPDERIITI 58 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH-HHhhcCCCCCEEEE
Confidence 57777777777 47899999999999999987643 33333333344443
No 183
>KOG0390|consensus
Probab=94.61 E-value=0.16 Score=54.85 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHH---HcCC-------cEEEEcCCCCcHHHHHHHHHHHHh--cCC-----CeEEEEcccHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKL---EEHN-------HVFVTAHTSAGKTVIAEYAIALSQ--NHK-----TRTIYTSPIKALSNQKYRD 256 (333)
Q Consensus 194 ~l~~~Q~~ai~~l---~~g~-------~vlv~apTGSGKTl~~~l~il~~l--~~g-----~ral~l~PtraLa~Q~~~~ 256 (333)
.++|||++.+.-+ ..|. -++++=..|+|||+-.+.-+...+ .+. .++|+|+|- .|+.-+.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 7999999999775 2222 245555679999998766655333 344 679999997 788888888
Q ss_pred HHHhcCC--cEE--EeCCCCC---------CC---C--cceEEec-------------cCcceEecccccccc-ccCcCc
Q psy2760 257 FRETFQD--VGL--IDDLPPV---------FP---D--VEKLLED-------------LNIGGLDELSIHDFN-KHLKFW 304 (333)
Q Consensus 257 l~~~f~~--vgl--ltGd~~~---------~~---~--a~ili~t-------------~~i~liViDe~H~~~-~~~R~~ 304 (333)
|.+-.+. +.. +.|.... .. + ..+++.. ..++++|.||-|... ..++.|
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~ 396 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTL 396 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHH
Confidence 8876552 222 3333331 00 0 1122211 168999999999874 445555
Q ss_pred ccccchhhhhhheeccCcc
Q psy2760 305 KPKVQLDDLFDWTMASDAT 323 (333)
Q Consensus 305 ~~~~~l~~l~~l~~~~d~~ 323 (333)
...- -++.-+.++.|.++
T Consensus 397 kaL~-~l~t~rRVLLSGTp 414 (776)
T KOG0390|consen 397 KALS-SLKTPRRVLLTGTP 414 (776)
T ss_pred HHHH-hcCCCceEEeeCCc
Confidence 5433 22333445555443
No 184
>PRK09183 transposase/IS protein; Provisional
Probab=94.57 E-value=0.18 Score=47.66 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=33.5
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 253 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~ 253 (333)
+..+.++++.||+|+|||..+......+...|.+++|+. ..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHHH
Confidence 356889999999999999887654444445677787764 44555444
No 185
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.45 E-value=0.2 Score=54.36 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.-.+|.+|.|||||.+..-.+-..+ .++.++++++-.++|+.+...+|+..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~ 101 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA 101 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc
Confidence 4558899999999988766555443 56889999999999999999999763
No 186
>PRK04328 hypothetical protein; Provisional
Probab=94.44 E-value=0.089 Score=49.24 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=38.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|..+++.|++|+|||..+..-+...+..|.+++|++ +.+-..++.+.+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~ 72 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQ 72 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 3788999999999999988877766777788999987 44455555555543
No 187
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=94.43 E-value=0.12 Score=56.62 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH---hcC-CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE---TFQ-DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~---~f~-~vgl 266 (333)
++..+++.|.-..-.+..|+ +....||-|||+++.+|+......|..|-+++..--||.-=.+.+.. .+| .||+
T Consensus 75 lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 75 LGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred hCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 34467888887777777775 68999999999999998876556677788887777787655544443 334 3777
Q ss_pred EeCCCCC
Q psy2760 267 IDDLPPV 273 (333)
Q Consensus 267 ltGd~~~ 273 (333)
.+.+...
T Consensus 153 i~~~~~~ 159 (925)
T PRK12903 153 NKANMDP 159 (925)
T ss_pred eCCCCCh
Confidence 7665543
No 188
>KOG1000|consensus
Probab=94.40 E-value=0.4 Score=49.49 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC---cEEEeC
Q psy2760 194 ELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD---VGLIDD 269 (333)
Q Consensus 194 ~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~---vglltG 269 (333)
.+-|+|++-+.- +..|..+++.-.-|-|||+-++. |....+..-..++++|- .|--.+.+.+...++. +.++.+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 578889998776 58888999999999999987754 44344444557888886 3444555566554553 455554
Q ss_pred CCCCCC---Cc-ceEEec-------------cCcceEecccccccccc-CcCcccccchhhhhh-heeccCcchh----h
Q psy2760 270 LPPVFP---DV-EKLLED-------------LNIGGLDELSIHDFNKH-LKFWKPKVQLDDLFD-WTMASDATTL----E 326 (333)
Q Consensus 270 d~~~~~---~a-~ili~t-------------~~i~liViDe~H~~~~~-~R~~~~~~~l~~l~~-l~~~~d~~~~----e 326 (333)
....-+ .+ .+.|.. .....+++||.|++.+. +|+-+.-.-+++.++ .++.|.+|.. |
T Consensus 276 ~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~e 355 (689)
T KOG1000|consen 276 SSDPLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSE 355 (689)
T ss_pred ccCCccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchh
Confidence 433221 11 122221 14678999999999655 333332233344444 6677777753 5
Q ss_pred hhhc
Q psy2760 327 IFTY 330 (333)
Q Consensus 327 ~~~~ 330 (333)
.|+-
T Consensus 356 lytq 359 (689)
T KOG1000|consen 356 LYTQ 359 (689)
T ss_pred hhhh
Confidence 5543
No 189
>PF12846 AAA_10: AAA-like domain
Probab=94.34 E-value=0.073 Score=49.42 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 251 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~ 251 (333)
+.|+++.|+||||||......+......|.+++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 3689999999999998888666677788888888877755554
No 190
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.31 E-value=0.14 Score=56.91 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH--HHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il--~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+..+|.=-||||||+......- .......+++||+-.+.|-.|+.+.|.. |+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~ 328 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGK 328 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHH
Confidence 4689999999999998766543 3335668899999999999999999976 443
No 191
>PRK05973 replicative DNA helicase; Provisional
Probab=94.25 E-value=0.11 Score=48.68 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
+..|.-++|.|++|+|||..++.-+......|.+++|++-.-. ..|+.+++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHH
Confidence 4567889999999999999988766666667888999864422 5666666654
No 192
>KOG1132|consensus
Probab=94.21 E-value=0.11 Score=56.53 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=54.7
Q ss_pred ccCCCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHH---HHh------------c--------------
Q psy2760 189 HTWPFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIA---LSQ------------N-------------- 235 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il---~~l------------~-------------- 235 (333)
-.|||.|++-|...+.. +....+.++..|||+|||+..+-..+ +.. .
T Consensus 16 V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 16 VEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 35899999999887665 46778999999999999998877555 111 0
Q ss_pred -------C------CCeEEEEcccHHHHHHHHHHHHH
Q psy2760 236 -------H------KTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 236 -------~------g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
. -.++.|-+-|..-..|+.+++++
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 0 24577778888889999999876
No 193
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.11 E-value=0.15 Score=48.20 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=37.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 258 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~ 258 (333)
.++.++++.||+|.|||..+..........|.+++| +++.+|+.++...+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f-~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF-ITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHHHh
Confidence 468899999999999998876544444455566665 678888888776654
No 194
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.03 E-value=0.14 Score=48.87 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=34.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHH-hcCC-CeEEEEc--ccHHHHHHHHHHHHHhc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALS-QNHK-TRTIYTS--PIKALSNQKYRDFRETF 261 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~-l~~g-~ral~l~--PtraLa~Q~~~~l~~~f 261 (333)
.++.++++||||+|||......+... ...| .++.++. |.|.-+.++...+.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~ 250 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKIL 250 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHh
Confidence 35678899999999998876544333 3323 5665553 44655666666665543
No 195
>KOG1133|consensus
Probab=94.02 E-value=0.074 Score=56.44 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 191 WPFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il 231 (333)
|||.|+.+|.+.... +..|+--+..+|||.|||+..+-+.+
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 788999999988776 47899889999999999999887766
No 196
>KOG4439|consensus
Probab=93.96 E-value=0.14 Score=54.52 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHH-----cCCcEEEEcCCCCcHHHHHHHHHHH-----Hhc-----CCCeEEEEcccHHHHHHHHHHH
Q psy2760 193 FELDVFQKQAIIKLE-----EHNHVFVTAHTSAGKTVIAEYAIAL-----SQN-----HKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~-----~g~~vlv~apTGSGKTl~~~l~il~-----~l~-----~g~ral~l~PtraLa~Q~~~~l 257 (333)
+.+-|||+.++.-+. .+.--++.-.-|-|||+.-+..|+. ..+ ...+.++|+|. .|.+|+..++
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHH
Confidence 488999999987762 2334577788899999976666652 111 11258999998 7899999999
Q ss_pred HHhcCC----cEEEeCCCCCCCC------cceEEeccC-----------------------cceEecccccccccc
Q psy2760 258 RETFQD----VGLIDDLPPVFPD------VEKLLEDLN-----------------------IGGLDELSIHDFNKH 300 (333)
Q Consensus 258 ~~~f~~----vglltGd~~~~~~------a~ili~t~~-----------------------i~liViDe~H~~~~~ 300 (333)
..+... |.+++|.-..+.. ..+++.|.+ -..||.||+|.+.++
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 888764 7888888754332 245666542 134678999988655
No 197
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.93 E-value=0.16 Score=48.21 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 194 ELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.+.+.|.+.+..+. .+..++++||||||||......+......+.+++.+
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti 114 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV 114 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE
Confidence 35777888887653 345789999999999987643322222233444444
No 198
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.89 E-value=0.23 Score=46.04 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHH----HcCC-cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 194 ELDVFQKQAIIKL----EEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 194 ~l~~~Q~~ai~~l----~~g~-~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
.+++.+++++..+ ..+. .++++||+|+|||..+....-...........+.++..-..+....+...+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~l 95 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADF 95 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHc
Confidence 4677777777765 2333 688999999999988775432222222233333443333344444444433
No 199
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.85 E-value=0.14 Score=47.35 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=36.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 258 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~ 258 (333)
.|..+++.+++|+|||..+...+.....+|.+++|+... +-..+..+.+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~ 72 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMM 72 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHH
Confidence 478899999999999999766655555678899998843 33455555553
No 200
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.70 E-value=0.15 Score=45.78 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=32.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
.|.-+.++||+|||||..++..+......+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 367889999999999999987666666678889998754
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.64 E-value=0.27 Score=54.89 Aligned_cols=62 Identities=11% Similarity=-0.005 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHcCC-cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 253 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~-~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~ 253 (333)
++.|++-|++|+..+..++ .+++.|+.|+|||.+...........|.+++.++||---|..+
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHH
Confidence 4579999999999987654 5789999999999874332222334588999999996555444
No 202
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.58 E-value=0.18 Score=45.64 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=34.6
Q ss_pred cEEEEcCCCCcHHHHHHH-HHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhcC
Q psy2760 211 HVFVTAHTSAGKTVIAEY-AIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l-~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f~ 262 (333)
-+++.||||+|||....- +...... +.++.+++ ..|.=+.++.+.+.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc
Confidence 478899999999988654 4333334 66666654 458888888888877654
No 203
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.55 E-value=0.16 Score=47.91 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
|.-++++|++|+|||..+..-+......|.+++|++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 778999999999999998876666666788999987
No 204
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.53 E-value=0.18 Score=45.96 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRD 256 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~ 256 (333)
.|..+++.|++|+|||..+...+...+.++.+++|+.- -+...++.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHH
Confidence 47899999999999999877655555567888888864 2333444444
No 205
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.53 E-value=0.17 Score=49.69 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraL 249 (333)
+..+++++++|+||||||... .+++.......|++.+=-+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCCCeEEEecCCCcc
Confidence 367899999999999999875 3445555555566555333443
No 206
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.47 E-value=0.2 Score=45.62 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
|..+++.|++|+|||..+..-+...+..+.+++|+.-. +-.+|+.+++..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e-~~~~~l~~~~~~ 65 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE-EREERILGYAKS 65 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHH
Confidence 67889999999999998877666666678899998654 346666666644
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.42 E-value=0.2 Score=49.10 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
.+.+++++||||+|||..+...+-.....|.+|+|+. ...|..+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-ADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-HHHHHHHHH
Confidence 4689999999999999876654444556777787754 455655553
No 208
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.34 E-value=0.16 Score=47.50 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=28.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC-CeEEEEcccHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKA 248 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g-~ral~l~Ptra 248 (333)
..+.+++++|+||||||.... +++...... .+++.+-.+.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~-all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLN-ALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHH-HHHHHCHTTTSEEEEEESSS-
T ss_pred ccceEEEEECCCccccchHHH-HHhhhccccccceEEeccccc
Confidence 568899999999999998763 444444444 66666654444
No 209
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.30 E-value=0.51 Score=49.14 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=72.1
Q ss_pred ccCCCCCCHHHHHHHHHHH------cC----CcEEEEcCCCCcHHHHHHHHHH----HHhcCCCeEEEEcccHHHHHHHH
Q psy2760 189 HTWPFELDVFQKQAIIKLE------EH----NHVFVTAHTSAGKTVIAEYAIA----LSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~------~g----~~vlv~apTGSGKTl~~~l~il----~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
..+|+.+-|||+-.+-.+. .| +-.++..|-+-|||..+..-++ .....+.+..+++|+.+-+.+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 5678899999999998864 22 3578999999999987653222 22256788889999999998888
Q ss_pred HHHHHhcCCc--------------EEEeCCCCCCCC----cceEEeccCcceEecccccccccc
Q psy2760 255 RDFRETFQDV--------------GLIDDLPPVFPD----VEKLLEDLNIGGLDELSIHDFNKH 300 (333)
Q Consensus 255 ~~l~~~f~~v--------------glltGd~~~~~~----a~ili~t~~i~liViDe~H~~~~~ 300 (333)
...+...... -+..+.+..... ..-.....+..+.++||+|.|...
T Consensus 136 ~~ar~mv~~~~~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 136 NPARDMVKRDDDLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HHHHHHHHhCcchhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 7665433211 112222111100 001111235678899999999886
No 210
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.26 E-value=0.18 Score=49.39 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
|+-+.+++|+|||||..++..+......+.+++|+....++..+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 77899999999999999998887777778899999776665554
No 211
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.25 E-value=0.25 Score=43.40 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=34.6
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhc----------CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQN----------HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~----------~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|.-.++.||+|+|||.+..-.+..... .+.+++|+..-.. ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 4778999999999999998775553332 4678999876544 4566666655443
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.25 E-value=0.38 Score=45.22 Aligned_cols=44 Identities=7% Similarity=0.048 Sum_probs=29.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
..++++|++|+|||..+...+......+.+++|+ +...|...+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHHHH
Confidence 4789999999999987765444444557777766 4444444433
No 213
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=93.19 E-value=0.2 Score=55.82 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=55.8
Q ss_pred CHHHHHHHHHH--------HcCCcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHHHHHHHHHHHHhcC--
Q psy2760 196 DVFQKQAIIKL--------EEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKALSNQKYRDFRETFQ-- 262 (333)
Q Consensus 196 ~~~Q~~ai~~l--------~~g~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~PtraLa~Q~~~~l~~~f~-- 262 (333)
..||-.|+..+ ..|-.++-.|.||+|||++=.-.+ +++ ..|.|..+-.-.|.|.-|.-..++++++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 56899998885 245577889999999999854433 333 3466888888999999999999999876
Q ss_pred --CcEEEeCC
Q psy2760 263 --DVGLIDDL 270 (333)
Q Consensus 263 --~vglltGd 270 (333)
++.++.|+
T Consensus 489 ~ddLAVlIGs 498 (1110)
T TIGR02562 489 DDDLAVLIGG 498 (1110)
T ss_pred ccceEEEECH
Confidence 25555553
No 214
>KOG4150|consensus
Probab=93.17 E-value=0.011 Score=61.48 Aligned_cols=64 Identities=11% Similarity=-0.047 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH--HHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il--~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
.+..+|.+++.-+.+|+++.+...|.|||.+++..+.. +.+.+....+|+.||+++++..-+.+
T Consensus 286 ~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred chhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCce
Confidence 57899999999999999999999999999999988765 45567788999999999988766543
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.13 E-value=0.28 Score=46.76 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=40.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f~~vglltG 269 (333)
.+-++++||+|+|||..+.-.+......|.+++++. +.|.-+.++...+.++.+ +.++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~ 133 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQ 133 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeC
Confidence 456788899999999876654444455677777765 567767777777766554 554443
No 216
>KOG0389|consensus
Probab=93.10 E-value=0.25 Score=53.32 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHH--HHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC--c
Q psy2760 193 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVI--AEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--V 264 (333)
Q Consensus 193 f~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~--~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~--v 264 (333)
+.|-++|.--+.=+ ..+-+.++.-.-|-|||.- ++++.+......+.=|+|||.-.| .-+.++|.+.++. |
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~V 476 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKV 476 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEE
Confidence 56788887766553 5677889999999999954 455655555555677889998655 5577888886665 5
Q ss_pred EEEeCCCCCC-----------CCcceEEecc----------------CcceEecccccccccc-CcCcccc
Q psy2760 265 GLIDDLPPVF-----------PDVEKLLEDL----------------NIGGLDELSIHDFNKH-LKFWKPK 307 (333)
Q Consensus 265 glltGd~~~~-----------~~a~ili~t~----------------~i~liViDe~H~~~~~-~R~~~~~ 307 (333)
-.+.|.+..+ ..-.+++.|. ...++|.||.|++... +-+|+..
T Consensus 477 e~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~L 547 (941)
T KOG0389|consen 477 EPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHL 547 (941)
T ss_pred EeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHh
Confidence 6677765422 1235777765 5778999999999654 4445543
No 217
>PRK04296 thymidine kinase; Provisional
Probab=93.09 E-value=0.14 Score=45.92 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
|.-.+++||.|+|||..++-.+......+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4567899999999998887777666677889998876
No 218
>KOG0924|consensus
Probab=92.96 E-value=0.62 Score=49.84 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHH-HHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY-AIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l-~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
...+.+.+..+..++-+++.+.||||||.-.-- .........+-+-+.-|.|.-|-.+.+++.+-.+
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 344556666677888999999999999975322 1112222333455567999888888888876553
No 219
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.95 E-value=0.21 Score=49.07 Aligned_cols=45 Identities=24% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 253 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~ 253 (333)
|+-+.+++|+|||||..++..+......+.+++|+.+..++-.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 778899999999999999988877777788999998776665543
No 220
>PRK10436 hypothetical protein; Provisional
Probab=92.94 E-value=0.26 Score=50.53 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHH--HcCCcEEEEcCCCCcHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIALSQ 234 (333)
Q Consensus 194 ~l~~~Q~~ai~~l--~~g~~vlv~apTGSGKTl~~~l~il~~l 234 (333)
.+.+.|.+.+..+ ..+.-++++||||||||.... +++..+
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~-a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY-SALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHH-HHHHhh
Confidence 4577788878775 455679999999999998753 344333
No 221
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.85 E-value=0.15 Score=46.68 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=33.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEc---ccHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS---PIKALSNQ 252 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~---PtraLa~Q 252 (333)
.|.-++++|++|+|||..+.-.+...... +.+++|++ |..+++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 47789999999999999887766655444 88999987 33444443
No 222
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.67 E-value=0.12 Score=52.32 Aligned_cols=56 Identities=23% Similarity=0.164 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEE
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgll 267 (333)
.++++.||||||||..+.+|-+.. .+..+|+.=|--+|.......++++..+|-++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YPGSMIVTDPKGELYEKTAGYRKKRGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--ccCCEEEEECCCcHHHHHHHHHHHCCCEEEEe
Confidence 589999999999999998887643 23367888899999888777666654445443
No 223
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.64 E-value=0.28 Score=48.42 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2760 194 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249 (333)
Q Consensus 194 ~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraL 249 (333)
.+++.|...+..+ ....|++++|.||||||...-. +........|+|.+=-|.+|
T Consensus 157 t~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNa-l~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 157 TMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNA-LSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred CcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHH-HHhcCCCcccEEEEeehhhh
Confidence 5788888888886 4555999999999999986432 22222334466666555544
No 224
>PRK09354 recA recombinase A; Provisional
Probab=92.60 E-value=0.24 Score=49.11 Aligned_cols=44 Identities=27% Similarity=0.209 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
|+-+.+++|+|||||..++..+......|.+++|+....++-.+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH
Confidence 77889999999999999999888777788999999877666653
No 225
>PRK08116 hypothetical protein; Validated
Probab=92.56 E-value=0.7 Score=43.87 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=30.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
..+++.|++|+|||..+....-.....+.+++|+ +..+|..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHH
Confidence 3499999999999988764333333456666665 4555665554433
No 226
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.56 E-value=0.29 Score=51.41 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHH--HcCCcEEEEcCCCCcHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIALSQ 234 (333)
Q Consensus 194 ~l~~~Q~~ai~~l--~~g~~vlv~apTGSGKTl~~~l~il~~l 234 (333)
.+.+.|.+.+..+ .....++++||||||||... .+++..+
T Consensus 299 g~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 299 GFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 4577777777775 34457899999999999875 4444444
No 227
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.50 E-value=0.21 Score=40.75 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
+++.+++.|++|+|||.+......
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999998876554
No 228
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.47 E-value=0.3 Score=50.34 Aligned_cols=101 Identities=23% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhcCCCe-EEE-------EcccHHHHHHH---------H
Q psy2760 194 ELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQNHKTR-TIY-------TSPIKALSNQK---------Y 254 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~~g~r-al~-------l~PtraLa~Q~---------~ 254 (333)
.+.+.|.+.+..+... -=+++.||||||||..- ++++..+....+ ++- ..|- ++|+ +
T Consensus 241 g~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~~~nI~TiEDPVE~~~~g---I~Q~qVN~k~gltf 316 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTPERNIITIEDPVEYQLPG---INQVQVNPKIGLTF 316 (500)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCCCceEEEeeCCeeeecCC---cceeecccccCCCH
Confidence 4578888888886433 35789999999999874 444444333222 221 1221 1111 1
Q ss_pred -HHHHHhcC--CcEEEeCCCCCCCCcceEEeccCcceEecccccccc
Q psy2760 255 -RDFRETFQ--DVGLIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFN 298 (333)
Q Consensus 255 -~~l~~~f~--~vglltGd~~~~~~a~ili~t~~i~liViDe~H~~~ 298 (333)
+-++..+. +--+..|......-+++.+.-.--+++|..+.|--+
T Consensus 317 a~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnd 363 (500)
T COG2804 317 ARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTND 363 (500)
T ss_pred HHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCc
Confidence 12222222 134455666655555544444445666777777543
No 229
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.41 E-value=0.21 Score=45.10 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.|.-++++|++|+|||..+...+......+.+++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3677899999999999999887766666788899983
No 230
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.39 E-value=0.23 Score=45.61 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
|..+++.|++|+|||..+...+......|.+++|+.=- +-..++.+++.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~ 74 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMES 74 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHH
Confidence 67899999999999999877666666678899998643 333455555543
No 231
>PRK12377 putative replication protein; Provisional
Probab=92.38 E-value=0.37 Score=45.46 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
..++++.||+|+|||..+....-.....|..++|+ +..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHHH
Confidence 46899999999999987765544445566667654 5556666655443
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.13 E-value=0.47 Score=48.11 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH-HHHHH-hcCCCeEEEEc--ccHHHHHHHHHHHHHhc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY-AIALS-QNHKTRTIYTS--PIKALSNQKYRDFRETF 261 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l-~il~~-l~~g~ral~l~--PtraLa~Q~~~~l~~~f 261 (333)
++.+++.||||+|||..... +.... ...+.++.++. |.|.-+.++...+.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~ 277 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM 277 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh
Confidence 66889999999999987654 33333 34566776654 45655555555555533
No 233
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.07 E-value=0.25 Score=46.49 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=26.2
Q ss_pred CCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 195 LDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 195 l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.++..++.... +..|+++++.||+|+|||.++...
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 34444444443 578999999999999999998653
No 234
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.04 E-value=0.26 Score=44.46 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 250 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa 250 (333)
.+.+++++||+|+|||..+....-.....+..++|+ +...+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i-~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL-PLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE-eHHHHH
Confidence 457899999999999998876554444455566664 444443
No 235
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.01 E-value=0.31 Score=50.26 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHc-C-CcEEEEcCCCCcHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEE-H-NHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~-g-~~vlv~apTGSGKTl~~~ 227 (333)
.+.+.|.+.+..+.. . .-++++||||||||....
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 457788888877633 2 357899999999998764
No 236
>PRK06921 hypothetical protein; Provisional
Probab=91.88 E-value=0.41 Score=45.42 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=31.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa~Q~~~ 255 (333)
.+.++++.|++|+|||..+...+-..... +..++|+. ..++..++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~l~~ 163 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGDLKD 163 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHHHHH
Confidence 46789999999999998765333233444 67777765 4455555443
No 237
>KOG1131|consensus
Probab=91.84 E-value=0.63 Score=48.37 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCC-CCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHH----hcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 191 WPF-ELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALS----QNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~----l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
||| ..+|-|-+-... +..+.++++-.|+|.|||++.+-.++.. .....+.+|.+-|..-+.....+++.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 677 788988776655 4567799999999999998877665522 13457899998775555555544433
No 238
>KOG0923|consensus
Probab=91.82 E-value=0.36 Score=51.32 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH---HHhc-CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA---LSQN-HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il---~~l~-~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
+++-.+.+.++..+.-++|.|.||||||.- +|-. .... .|.++-+.-|.|--|-.+..+..+-.+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhC
Confidence 555567777788899999999999999974 2322 1223 344577778999888888877765443
No 239
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.81 E-value=0.12 Score=51.19 Aligned_cols=54 Identities=22% Similarity=0.133 Sum_probs=40.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC-CcEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLI 267 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~-~vgll 267 (333)
++++.||||||||..+.+|-+.. .+..++++=|--++........++ .+ .|.++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~--~~~s~vv~D~Kge~~~~t~~~r~~-~G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT--WPGSVVVLDPKGENFELTSEHRRA-LGRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc--CCCCEEEEccchhHHHHHHHHHHH-cCCeEEEE
Confidence 57999999999999988776543 346788888999998777766654 44 35554
No 240
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.79 E-value=0.28 Score=44.61 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
.|.-++++|++|+|||..+...+......+.+++|+.=.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 367889999999999999887666665667889988543
No 241
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.76 E-value=0.37 Score=47.44 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2760 195 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249 (333)
Q Consensus 195 l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraL 249 (333)
+++.+.+.+..+ ..+.+++++++||||||..... ++..+....+.+++--+.+|
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~a-l~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSA-LLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH-HHccCCCCCcEEEECCccee
Confidence 456677777664 6778999999999999986543 33333444566666555555
No 242
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=91.69 E-value=0.62 Score=49.70 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH--HHHHHHHHHHHh
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA--LSNQKYRDFRET 260 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra--La~Q~~~~l~~~ 260 (333)
..|++|.|+||+|||..+...+.+..+.|..++++=|-.. |...+....+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHh
Confidence 5799999999999999987777788888888888888744 777777666553
No 243
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.69 E-value=0.82 Score=49.51 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHH---H--cCCcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 194 ELDVFQKQAIIKL---E--EHNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 194 ~l~~~Q~~ai~~l---~--~g~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
..+.-|.+++..+ . ..+-+++.|.-|-|||.+..+++......+ .++++.+|+.+=++.+++...+.+
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 4677788776663 2 333688899999999999998775444333 589999999998888887665544
No 244
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.67 E-value=0.45 Score=41.31 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=29.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDF 257 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l 257 (333)
+++.|++|+|||..+...+......+.+++++. +.|.-..++...+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~ 50 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVL 50 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHh
Confidence 578999999999997665544444567777654 4444333434333
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.65 E-value=0.53 Score=43.58 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
.+.+++++||+|+|||.............+.+++|+.-
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 34689999999999998776444334455777888654
No 246
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.65 E-value=0.48 Score=50.02 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=43.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHh------cCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l------~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
..++-++|.|..|||||.+++.-+.+.+ ..+..++++.|.+-+..-+.+.|-++
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhh
Confidence 4567789999999999999998665433 23445999999999999888888763
No 247
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.63 E-value=0.21 Score=48.67 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~ 227 (333)
-=++|.||||||||....
T Consensus 126 GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 126 GLILVTGPTGSGKSTTLA 143 (353)
T ss_pred ceEEEeCCCCCcHHHHHH
Confidence 368999999999987643
No 248
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.59 E-value=0.27 Score=45.83 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=29.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSP 245 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~P 245 (333)
..|..+++.|++|+|||..+...+...... |.+++|++-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 347889999999999998877655544444 888999863
No 249
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.59 E-value=0.33 Score=46.87 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=26.1
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
+..+.+++++||||||||...-. ++.......+++++-.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~a-l~~~~~~~~~iv~ied 179 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKS-LVDEIPKDERIITIED 179 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHH-HHccCCccccEEEEcC
Confidence 36789999999999999987643 3333333445555433
No 250
>KOG1002|consensus
Probab=91.55 E-value=1.3 Score=45.82 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHH-cCC----cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC---c
Q psy2760 193 FELDVFQKQAIIKLE-EHN----HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD---V 264 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~-~g~----~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~---v 264 (333)
..+-|+|++-+.=+. +.. --++.-.-|-|||.-.+..++. --.+...++++|+.||. |+..++...-.+ +
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla-e~~ra~tLVvaP~VAlm-QW~nEI~~~T~gslkv 260 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA-EVDRAPTLVVAPTVALM-QWKNEIERHTSGSLKV 260 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh-ccccCCeeEEccHHHHH-HHHHHHHHhccCceEE
Confidence 367899998776542 221 2355667899999876654443 33456699999999985 666666443222 5
Q ss_pred EEEeCCC
Q psy2760 265 GLIDDLP 271 (333)
Q Consensus 265 glltGd~ 271 (333)
-+++|..
T Consensus 261 ~~YhG~~ 267 (791)
T KOG1002|consen 261 YIYHGAK 267 (791)
T ss_pred EEEeccc
Confidence 5566643
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.54 E-value=0.37 Score=49.56 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=41.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
..|..+++.+|+|+|||..++.-+.....+|.+++|++ .-+-..|+.++...
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYS 312 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHH
Confidence 35678999999999999988877766777888999987 55667777777644
No 252
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.52 E-value=0.51 Score=47.39 Aligned_cols=88 Identities=8% Similarity=0.005 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH-HHh---cCCCeEEEEc--ccHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcceEEe
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA-LSQ---NHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLLE 282 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il-~~l---~~g~ral~l~--PtraLa~Q~~~~l~~~f~~vglltGd~~~~~~a~ili~ 282 (333)
+..+++.||||+|||.+..-... ... ..+.++.++. +.|.-+.++.+.+.+..+ +.+..+....... ..+-.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv~~~~~~~~l~-~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPVKAIESFKDLK-EEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cceEeeCcHHHHH-HHHHH
Confidence 46789999999999988754332 222 2455665553 667777777777766543 2222211110000 00001
Q ss_pred ccCcceEecccccccc
Q psy2760 283 DLNIGGLDELSIHDFN 298 (333)
Q Consensus 283 t~~i~liViDe~H~~~ 298 (333)
..+..++++|++.+..
T Consensus 252 ~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 252 SKDFDLVLVDTIGKSP 267 (388)
T ss_pred hCCCCEEEEcCCCCCc
Confidence 1255777888887543
No 253
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.48 E-value=0.31 Score=44.38 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKA 248 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~Ptra 248 (333)
++++.|.|.||||||.....-+.... ..+.+++++=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 58999999999999998877666666 77778888877644
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.44 E-value=0.56 Score=47.71 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEc--ccHHHHHHHHHHHHHh
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTS--PIKALSNQKYRDFRET 260 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~--PtraLa~Q~~~~l~~~ 260 (333)
+..++++||||+|||..+...+. .....|.++.++. +.|+.+..+.+++.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~ 277 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADT 277 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHh
Confidence 45688999999999998876544 3355666776654 5678777777776553
No 255
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.41 E-value=0.38 Score=49.48 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=38.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|..++++|++|+|||..+..-+.....+ |.+++|++-. +-..++.+....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~ 71 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARS 71 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHH
Confidence 47899999999999999988766655544 7899998743 555566655544
No 256
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.33 E-value=0.83 Score=51.56 Aligned_cols=63 Identities=19% Similarity=0.053 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHHHH-cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKLE-EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~-~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
++.|++-|++|+..+. .++-+++.|+.|+|||.+...........|.+++-++||-.=|..+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHH
Confidence 4679999999999874 46778999999999998876654444456889999999966554443
No 257
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.31 E-value=0.58 Score=45.70 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f~~vglltG 269 (333)
+.-++++||+|+|||..+.-........+.+++++. +.|+-+.++...+..+. ++.++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~-~i~~~~~ 175 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV-GVPVIAQ 175 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc-CceEEEe
Confidence 567889999999999887654443345566777664 34666656666665543 3555443
No 258
>PRK10867 signal recognition particle protein; Provisional
Probab=91.28 E-value=0.49 Score=48.23 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEc--ccHHHHHHHHHHHHHh
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS--PIKALSNQKYRDFRET 260 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~--PtraLa~Q~~~~l~~~ 260 (333)
.-++++|++|+|||.++.-.+...... |.+++++. +.|.-+.++.+.+.+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQ 154 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhh
Confidence 467889999999998876544433344 77777664 5677777666666554
No 259
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.27 E-value=0.57 Score=47.80 Aligned_cols=53 Identities=9% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETF 261 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f 261 (333)
...++++|++|+|||.++..........|.+++++. +.|.-+.++.+.+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~ 149 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKI 149 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 357889999999999987665444445566777664 34665666666665544
No 260
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.11 E-value=0.4 Score=42.50 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=33.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
++|.|++|||||..+..-+.. .+.+++|++-.+++-..+.+++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI 44 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERI 44 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHH
Confidence 588999999999988765432 5678999988887766666554
No 261
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=91.10 E-value=0.35 Score=48.32 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=31.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
..+++++.|.||||||.+....+-+....|.++|+.=|.-+....
T Consensus 14 e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHH
T ss_pred hhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHH
Confidence 468999999999999986544444556678888888888666443
No 262
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.08 E-value=0.5 Score=47.59 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=36.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETF 261 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f 261 (333)
.++.++++||||+|||....-........+.++.++. |.|.=+..+.+.+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l 260 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL 260 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC
Confidence 4778999999999999887665444455566776654 55655555555555533
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.04 E-value=0.65 Score=47.11 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=34.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETF 261 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f 261 (333)
.+.+++.||||+|||.............|.++.++. |.|.-+.++...+.+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l 295 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI 295 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc
Confidence 367899999999999987664444445566666554 45654555555554533
No 264
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=90.98 E-value=0.81 Score=41.60 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
.+..++++||+|+|||..+..........+..++|+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 35689999999999998776544444455666666653
No 265
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.83 E-value=0.3 Score=49.12 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
.+++++.|+||||||.+....+.+....+.+++++=|..++...
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSK 85 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHh
Confidence 57999999999999987433333555667889998898776543
No 266
>KOG0385|consensus
Probab=90.71 E-value=1 Score=48.80 Aligned_cols=107 Identities=14% Similarity=0.067 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHHHH--HHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcCC--
Q psy2760 193 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAE--YAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQD-- 263 (333)
Q Consensus 193 f~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~~~--l~il~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-- 263 (333)
..++++|.+-+.=+ ..|-|+++.-.-|-|||+-.+ ++.+.. ....+.-++++|.-.|. .+.++|++..++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCCCcc
Confidence 36899998876553 688899999999999998643 344433 23345678899986664 567788764454
Q ss_pred cEEEeCCCCCC----------CCcceEEecc-------------CcceEecccccccccc
Q psy2760 264 VGLIDDLPPVF----------PDVEKLLEDL-------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 264 vglltGd~~~~----------~~a~ili~t~-------------~i~liViDe~H~~~~~ 300 (333)
+.++.|+...+ ..-.+++.+. +-.++|+||.|.+...
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~ 304 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNE 304 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcch
Confidence 67788875421 1234555554 4467999999998655
No 267
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.16 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
++.-|+++.||||||||+.+.-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH
Confidence 3456999999999999998854
No 268
>PRK05642 DNA replication initiation factor; Validated
Probab=90.46 E-value=0.42 Score=44.28 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
..++++||+|+|||.............+.+++|+.. ..+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~~~~~ 87 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AELLDR 87 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HHHHhh
Confidence 568899999999998744332233445778888654 555543
No 269
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.35 E-value=0.75 Score=46.81 Aligned_cols=52 Identities=6% Similarity=0.132 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEc--ccHHHHHHHHHHHHHhc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS--PIKALSNQKYRDFRETF 261 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~--PtraLa~Q~~~~l~~~f 261 (333)
..++++|++|+|||.++.-.+.... ..|.+++++. +.|.-+.++.+.+.+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~ 154 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQV 154 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhc
Confidence 3678899999999998766444432 4567777664 45666666666665543
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.30 E-value=0.6 Score=46.72 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=36.4
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCC-CeEEEEc--ccHHHHHHHHHHHHHhcC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHK-TRTIYTS--PIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g-~ral~l~--PtraLa~Q~~~~l~~~f~ 262 (333)
..|..+++.||||+|||......... ....| .++.++. +.|.=+.++.+.+.+.++
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g 194 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG 194 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC
Confidence 34789999999999999987654433 23434 3554443 235456677777766554
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.21 E-value=0.75 Score=44.62 Aligned_cols=46 Identities=4% Similarity=0.039 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
.++.+++.||+|+|||..+....-.....|.++.|+. .-+|+.++.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-~~~l~~~lk 200 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-FPEFIRELK 200 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-HHHHHHHHH
Confidence 3568999999999999887654444456677777663 224444443
No 272
>KOG0925|consensus
Probab=90.18 E-value=0.72 Score=47.64 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHH-HHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIA-EYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~-~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
+..+.+-+..+..+..+++.|.||||||.-. ...+...+.....+...-|.|--|.++..+..+-.
T Consensus 49 w~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEM 115 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEM 115 (699)
T ss_pred HHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHh
Confidence 4444444455688889999999999999642 22333334444667778899988888888776543
No 273
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.16 E-value=0.44 Score=42.90 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=15.1
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-++++||||||||.....
T Consensus 3 lilI~GptGSGKTTll~~ 20 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999998643
No 274
>PRK06893 DNA replication initiation factor; Validated
Probab=89.96 E-value=0.47 Score=43.69 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
..++++||+|+|||.......-....++.+++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 357899999999998766554444556777887654
No 275
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.94 E-value=0.7 Score=46.66 Aligned_cols=89 Identities=22% Similarity=0.179 Sum_probs=54.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
-.|.+|++.|+||.||++++...-....+......+-+..-++.+....- +.||- -|.+||-...... ++...+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~--eLFG~~kGaftGa~~~k~G---lfe~A~ 173 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA--ELFGHEKGAFTGAQGGKAG---LFEQAN 173 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH--HHhccccceeecccCCcCc---hheecC
Confidence 46899999999999999998764432222122233334554544443322 26875 5889984333221 344556
Q ss_pred cceEecccccccccc
Q psy2760 286 IGGLDELSIHDFNKH 300 (333)
Q Consensus 286 i~liViDe~H~~~~~ 300 (333)
=+.+..||+|.+...
T Consensus 174 GGtLfLDEI~~LP~~ 188 (403)
T COG1221 174 GGTLFLDEIHRLPPE 188 (403)
T ss_pred CCEEehhhhhhCCHh
Confidence 677788999987544
No 276
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.93 E-value=0.64 Score=42.00 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCC------CeEEEEcccH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHK------TRTIYTSPIK 247 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g------~ral~l~Ptr 247 (333)
.|.-+.+.||+|+|||..+...+......+ .+++|+....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 367889999999999999887665555555 7889987543
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.93 E-value=0.76 Score=46.79 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHh
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRET 260 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~ 260 (333)
.-++++|++|+|||..+.-........|.+++++. |.|.-+.++.+.+.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~ 153 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATK 153 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhc
Confidence 46789999999998776543333445577777665 5677777777766654
No 278
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.77 E-value=1.1 Score=43.74 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCC
Q psy2760 198 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPD 276 (333)
Q Consensus 198 ~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~ 276 (333)
...++-.....+.+|++.|++|+||+.++-..-....+ ..+..+.+...++.....+. ..|+. -|.++|.......
T Consensus 11 ~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-~~~pfv~vnc~~~~~~~l~~--~lfG~~~g~~~ga~~~~~G 87 (329)
T TIGR02974 11 VLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-WQGPLVKLNCAALSENLLDS--ELFGHEAGAFTGAQKRHQG 87 (329)
T ss_pred HHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-cCCCeEEEeCCCCChHHHHH--HHhccccccccCcccccCC
Confidence 33444444567889999999999999987643322222 23345555554444433322 24654 4556665432211
Q ss_pred cceEEeccCcceEecccccccccc
Q psy2760 277 VEKLLEDLNIGGLDELSIHDFNKH 300 (333)
Q Consensus 277 a~ili~t~~i~liViDe~H~~~~~ 300 (333)
.+...+-+.+.+||++.+...
T Consensus 88 ---~~~~a~gGtL~Ldei~~L~~~ 108 (329)
T TIGR02974 88 ---RFERADGGTLFLDELATASLL 108 (329)
T ss_pred ---chhhCCCCEEEeCChHhCCHH
Confidence 122234466778888876543
No 279
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=89.32 E-value=0.84 Score=47.05 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=40.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|..+++.+++|+|||..+...+......|.+++|++-. +-..|+.+.+.. |+
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~-~g 324 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARS-WG 324 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHH-cC
Confidence 467889999999999999887776677788999998644 446677666643 44
No 280
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.32 E-value=0.93 Score=48.04 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC----CeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK----TRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g----~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.+++-|++|+... ...++|.|..|||||.+...-+.+....+ .+++.++=|+.-|.++.+++.+.++
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4789999998764 56889999999999999888776554332 3588888999999999999988765
No 281
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=89.28 E-value=0.77 Score=51.02 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH---HHhcC-CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF---RETFQ-DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l---~~~f~-~vgl 266 (333)
|...++..|.-.--.+.+|+ +.-..||-|||+++.+|+......|..|-+|+..-=||.-=.+.+ .+.+| .||+
T Consensus 135 wdm~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~ 212 (1025)
T PRK12900 135 WDMVPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGV 212 (1025)
T ss_pred cCccccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeee
Confidence 34466666666555566665 568999999999999998765556666766666656665433333 33333 2676
Q ss_pred EeCCCC
Q psy2760 267 IDDLPP 272 (333)
Q Consensus 267 ltGd~~ 272 (333)
+..+..
T Consensus 213 i~~~~~ 218 (1025)
T PRK12900 213 ILNTMR 218 (1025)
T ss_pred eCCCCC
Confidence 655443
No 282
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.20 E-value=0.97 Score=43.98 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHH
Q psy2760 195 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 195 l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~ 227 (333)
+.+.|..-+.. +..++++++||+||||||..-.
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHH
Confidence 45555555444 5889999999999999997643
No 283
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=89.14 E-value=0.84 Score=50.98 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH---HhcC-CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR---ETFQ-DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~---~~f~-~vgl 266 (333)
|...++..|.-.--.+.+|+ +.-..||-|||+++.+|+......|..|-+|+..-=||.-=.+.+. +.+| .||+
T Consensus 166 W~m~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred CCCcccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 44456666655544456664 6799999999999999887665566677777766667754443333 3333 2665
Q ss_pred EeC
Q psy2760 267 IDD 269 (333)
Q Consensus 267 ltG 269 (333)
+..
T Consensus 244 i~~ 246 (1112)
T PRK12901 244 IDK 246 (1112)
T ss_pred cCC
Confidence 544
No 284
>PRK14974 cell division protein FtsY; Provisional
Probab=89.06 E-value=1.2 Score=43.91 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=34.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc--cHHHHHHHHHHHHHhcC
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP--IKALSNQKYRDFRETFQ 262 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P--traLa~Q~~~~l~~~f~ 262 (333)
.-++++|++|+|||....-.+......|.+++++.. .|+=+.++.+.+.+.++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lg 195 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG 195 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcC
Confidence 467889999999998765544444455677776653 35555555555555443
No 285
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=89.06 E-value=1.1 Score=47.98 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH--HHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK--ALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr--aLa~Q~~~~l~~ 259 (333)
..+.+|.|+||+|||......+.+..+.|.+++++=|-. +|..-++...+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~ 232 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKR 232 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 568999999999999999988888888888899988875 456566555544
No 286
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=88.94 E-value=3.1 Score=40.48 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHH----------cCCcEEEEcCCCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLE----------EHNHVFVTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~----------~g~~vlv~apTGSGKTl~~~l~il~~l~~g-~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.+...|.+++--+. .+.-.++.=.||.||--...-.|+.....| .|+|+++....|-....++|+..-.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 47888888876542 234567788899999877666666554444 5699999999999999999987543
No 287
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.79 E-value=1.1 Score=45.32 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccH-------HHHHHHHHHHHHhcCCc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIK-------ALSNQKYRDFRETFQDV 264 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~Ptr-------aLa~Q~~~~l~~~f~~v 264 (333)
...++++||+|+|||...-....... .+..+++|+.... ++-+.-...|++.+ .+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~ 176 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SL 176 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-cc
Confidence 45789999999999987655444444 3455888887654 55555666787777 53
No 288
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=88.71 E-value=0.61 Score=50.54 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
.+.|++|.|+||||||......+...+..|.+++++=|-.+
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~s 469 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRS 469 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 35689999999999999987766666667788888777654
No 289
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=88.40 E-value=0.67 Score=48.78 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraL 249 (333)
.+++++.|+||||||.+.-..+.+....+.+++++=|.-+.
T Consensus 176 ~~h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~g~~ 216 (566)
T TIGR02759 176 TQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTF 216 (566)
T ss_pred ccceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCe
Confidence 57999999999999975433333445567788887776444
No 290
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=88.35 E-value=1.8 Score=51.88 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRD 256 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~ 256 (333)
.|.+++-|++|+..++.. +-.++.|+.|+|||.+....+......|.+++.++||-.-+.++.+.
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 467899999999997553 67899999999999886554444445688999999997655555443
No 291
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.33 E-value=0.7 Score=45.34 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=26.3
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKA 248 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~Ptra 248 (333)
..+..++++||||||||..... ++..+. .+.+++.+--..+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~a-l~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLAS-MIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHH-HHHhhCcCCCCEEEEEcCChh
Confidence 3467899999999999988643 333332 2455665543333
No 292
>PRK13764 ATPase; Provisional
Probab=88.24 E-value=0.72 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.3
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..+++++++||||||||.....
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 4578999999999999987633
No 293
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.18 E-value=0.64 Score=47.89 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=37.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|..+++.|++|+|||..+..-+...+.+ |.+++|++ +-+-..|+.+.+..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis-~ee~~~~i~~~~~~ 81 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT-FEESPEDIIRNVAS 81 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE-ccCCHHHHHHHHHH
Confidence 37889999999999999987766555555 88899885 33455566666544
No 294
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.11 E-value=0.83 Score=51.82 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=44.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
..++++|.|+.|||||.+-..-++..+.. ..++++|+-|+.=|.++..++.+.+.
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 36799999999999999887766644432 36799999999999999988877664
No 295
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=88.03 E-value=0.93 Score=43.90 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=32.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSN 251 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~ 251 (333)
+-+++.|.-|.|||.++....+...+.|.|+++++ |...|.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHH
Confidence 45788999999999999887776667889998885 7766654
No 296
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.02 E-value=2.8 Score=42.95 Aligned_cols=66 Identities=9% Similarity=0.161 Sum_probs=47.8
Q ss_pred HHHHHHHHHHH-----cC----CcEEEEcCCCCcHHHHHHHHHHHHh----cCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 197 VFQKQAIIKLE-----EH----NHVFVTAHTSAGKTVIAEYAIALSQ----NHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 197 ~~Q~~ai~~l~-----~g----~~vlv~apTGSGKTl~~~l~il~~l----~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
|||+-.+..+. .| +.+++.-|=+.|||.......+..+ ..+..++++++++.-|..++..++....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 46666665543 12 4678889999999988765444332 2467899999999999999988877554
No 297
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=87.82 E-value=1.4 Score=41.35 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.+||.|.|||..+.+-
T Consensus 51 ~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHH
Confidence 37999999999999887653
No 298
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=87.81 E-value=0.39 Score=38.72 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~i 230 (333)
|+++|++|||||.++....
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 6899999999999986643
No 299
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.74 E-value=0.52 Score=38.09 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il 231 (333)
++++|++|||||.++-...-
T Consensus 2 I~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999876543
No 300
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=87.72 E-value=0.99 Score=39.94 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=30.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
+.+++.|++|||||..+...+.. .+.+++|++.....-.++.+++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~---~~~~~~~iat~~~~~~e~~~ri 46 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ---SGLQVLYIATAQPFDDEMAARI 46 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH---cCCCcEeCcCCCCChHHHHHHH
Confidence 46899999999999988765432 2446788876555555554444
No 301
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.71 E-value=1.6 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
...|+++.||+|.|||.++...+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHH
Confidence 34589999999999999886543
No 302
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=87.55 E-value=1 Score=40.93 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC------CCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH------KTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~------g~ral~l~P 245 (333)
.|.-+.++||+|+|||..+...+.....+ +.+++|+.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 47788999999999999988766543332 367888863
No 303
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.55 E-value=0.68 Score=49.16 Aligned_cols=57 Identities=14% Similarity=-0.053 Sum_probs=42.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEe
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLID 268 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgllt 268 (333)
..++++.||||||||..+.+|-+... +..+|++=|--++........++ +|. |-++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~--~~S~VV~DpKGEl~~~Ta~~R~~-~G~~V~vfd 215 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW--EDSVVVHDIKLENYELTSGWREK-QGQKVFVWE 215 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC--CCCEEEEeCcHHHHHHHHHHHHH-CCCeEEEEe
Confidence 46899999999999999999877543 45677778888888777755544 664 65543
No 304
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.42 E-value=0.51 Score=44.94 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..+++++++||+|+|||......+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhhh
Confidence 3788999999999999998766543
No 305
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.41 E-value=1.5 Score=44.58 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=30.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~PtraLa~Q~~~~l 257 (333)
..++++||+|+|||.......-.... .+.+++|+. ...+.++....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHH
Confidence 46899999999999876543333332 366788774 445555544443
No 306
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.38 E-value=1.2 Score=45.40 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=51.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCCCcceEEec
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFPDVEKLLED 283 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~~a~ili~t 283 (333)
.|.-+++.|++|+|||...+..+......+.+++|+.-. +-..|+..+..+ ++- +.+. .......-.. .+..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~r-lg~~~~~l~~~-~e~~l~~i~~-~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAER-LGLPSDNLYLL-AETNLEAILA-TIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHH-cCCChhcEEEe-CCCCHHHHHH-HHHh
Confidence 367889999999999998877655544567899998743 445666665543 331 2211 1111100000 0111
Q ss_pred cCcceEecccccccc
Q psy2760 284 LNIGGLDELSIHDFN 298 (333)
Q Consensus 284 ~~i~liViDe~H~~~ 298 (333)
.+..++|+|+++.+.
T Consensus 155 ~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 155 EKPDLVVIDSIQTMY 169 (446)
T ss_pred hCCCEEEEechhhhc
Confidence 256778999998654
No 307
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=87.16 E-value=2.1 Score=51.37 Aligned_cols=63 Identities=22% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHc--CCcEEEEcCCCCcHHHHHH---HHHHHHh-cCCCeEEEEcccHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAE---YAIALSQ-NHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~--g~~vlv~apTGSGKTl~~~---l~il~~l-~~g~ral~l~PtraLa~Q~~ 254 (333)
.+.+++.|++|+..++. ++.+++.|+.|+|||.+.. -++.... ..+.+++.++||..=+.++.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 35789999999999754 4677889999999998873 2333333 35778999999966665553
No 308
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.08 E-value=1.1 Score=37.18 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.1
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
+|++.||+|+|||..+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999887644
No 309
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.07 E-value=1.3 Score=45.13 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~ 255 (333)
..++++||+|+|||..+....-.....+.+++|+.. ..+.++...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~ 186 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVS 186 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHH
Confidence 468999999999998766433333445788888764 344444433
No 310
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.96 E-value=1.5 Score=43.68 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRD 256 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~ 256 (333)
..++++||+|+|||.......-... ..+.+++|+.. ..+..+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~~~~~~~~~~ 184 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-EKFTNDFVNA 184 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-HHHHHHHHHH
Confidence 4678999999999988744332222 23677888753 3444444433
No 311
>PRK04195 replication factor C large subunit; Provisional
Probab=86.80 E-value=2.5 Score=43.33 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.+.++++||+|+|||.++...+- .+ +..++.+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~-el--~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN-DY--GWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH-Hc--CCCEEEEc
Confidence 46899999999999988754332 22 34455553
No 312
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.64 E-value=1.9 Score=44.58 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=36.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH-HHHhcCCC-eEEEEc--ccHHHHHHHHHHHHHhcC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI-ALSQNHKT-RTIYTS--PIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i-l~~l~~g~-ral~l~--PtraLa~Q~~~~l~~~f~ 262 (333)
.|.-+++.||||+|||....... ......|. ++.++. +.|.=+.++.+.|.+.++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC
Confidence 35668899999999999875533 33344443 554442 456667777777766554
No 313
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.47 E-value=1.4 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
...|+++.||+|+|||.++.....
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999865443
No 314
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=86.39 E-value=1.2 Score=50.64 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=45.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCC-----CeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHK-----TRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g-----~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
.+.+++|.|..|||||.+-..-++..+..+ .++++++.|++=+.++..++.+++..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 477999999999999999777666544332 46899999999999999988887764
No 315
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=86.21 E-value=7 Score=37.04 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=72.5
Q ss_pred CHHHHHHHHH----HHc---CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH-HHHHHHHHHHHHhcCCc---
Q psy2760 196 DVFQKQAIIK----LEE---HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK-ALSNQKYRDFRETFQDV--- 264 (333)
Q Consensus 196 ~~~Q~~ai~~----l~~---g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr-aLa~Q~~~~l~~~f~~v--- 264 (333)
...|++.+.. ... ..|+|+.|+-|+|||-..-..+......|-|.|-|.... .-...+++.++.+-...
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf 111 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILF 111 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEE
Confidence 3456655544 233 369999999999998765543334445677776654331 12234445554321122
Q ss_pred -----------------EEEeCCCCCCCCcceEEeccCcceEec-----------cccccccccCcCcccccchhhhhhh
Q psy2760 265 -----------------GLIDDLPPVFPDVEKLLEDLNIGGLDE-----------LSIHDFNKHLKFWKPKVQLDDLFDW 316 (333)
Q Consensus 265 -----------------glltGd~~~~~~a~ili~t~~i~liVi-----------De~H~~~~~~R~~~~~~~l~~l~~l 316 (333)
.++.|+....+..-++.+|.+.-.++. +|+|..+.. ....+|.+.|.+
T Consensus 112 ~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~----eEklSLsDRFGL 187 (249)
T PF05673_consen 112 CDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTI----EEKLSLSDRFGL 187 (249)
T ss_pred ecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHH----HHHHhHHHhCCc
Confidence 234555555555556666765443333 234433322 123567888888
Q ss_pred eeccCcchhhhh
Q psy2760 317 TMASDATTLEIF 328 (333)
Q Consensus 317 ~~~~d~~~~e~~ 328 (333)
.+..-+++-|.|
T Consensus 188 ~l~F~~~~q~~Y 199 (249)
T PF05673_consen 188 WLSFYPPDQEEY 199 (249)
T ss_pred EEEecCCCHHHH
Confidence 888877777766
No 316
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=86.17 E-value=3.3 Score=42.97 Aligned_cols=88 Identities=20% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEecc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDL 284 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~ 284 (333)
...+.+|++.|++|+||+.++-..-....+. .+.++.+...++.....+. ..|+. -|.++|....... .+...
T Consensus 216 a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-~~pfv~i~c~~~~~~~~~~--~lfg~~~~~~~~~~~~~~g---~~~~a 289 (534)
T TIGR01817 216 ARSNSTVLLRGESGTGKELIAKAIHYLSPRA-KRPFVKVNCAALSETLLES--ELFGHEKGAFTGAIAQRKG---RFELA 289 (534)
T ss_pred hCcCCCEEEECCCCccHHHHHHHHHHhCCCC-CCCeEEeecCCCCHHHHHH--HHcCCCCCccCCCCcCCCC---ccccc
Confidence 3567899999999999999886543332222 3344444444443333322 34654 3445554322111 11222
Q ss_pred CcceEeccccccccc
Q psy2760 285 NIGGLDELSIHDFNK 299 (333)
Q Consensus 285 ~i~liViDe~H~~~~ 299 (333)
+-+.+.+||++.+..
T Consensus 290 ~~GtL~ldei~~L~~ 304 (534)
T TIGR01817 290 DGGTLFLDEIGEISP 304 (534)
T ss_pred CCCeEEEechhhCCH
Confidence 345677888887653
No 317
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=86.07 E-value=0.97 Score=50.05 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKA 248 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~Ptra 248 (333)
..|.+|.|+||||||+.....+.+.+. .+.+++++=|-++
T Consensus 475 n~n~~I~G~TGSGKS~l~~~li~q~~~~~~~~v~IiD~g~s 515 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLTNLLMQVMAVHRPRLFIVEAGNS 515 (893)
T ss_pred cccEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCCC
Confidence 569999999999999988777766654 4788888877765
No 318
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=86.05 E-value=1.5 Score=38.89 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSN 251 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraLa~ 251 (333)
.+++++||||+|||..+....- .+. .+.+.++.+-+-.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~-~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAE-LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH-HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HhccCCccchHHHhhhcccc
Confidence 3789999999999987655332 233 4455565555544433
No 319
>KOG2028|consensus
Probab=85.98 E-value=0.83 Score=45.85 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=39.6
Q ss_pred HHcCC--cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 206 LEEHN--HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 206 l~~g~--~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
+.+++ ++++.||.|.|||..+-+.+-.......+-+=++-|.+-++++..-|.+
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH
Confidence 35554 7899999999999988776554445556677778888877777666643
No 320
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=85.97 E-value=1.1 Score=39.97 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il 231 (333)
..|+++.|.||||||.+....+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~ 60 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLL 60 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCccHHHHHHHH
Confidence 45999999999999988765444
No 321
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=85.95 E-value=2.8 Score=40.88 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCC
Q psy2760 197 VFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFP 275 (333)
Q Consensus 197 ~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~ 275 (333)
....++-.....+.+|++.|.+|+||+.++-..-....+ ..+.++.+...++....... ..|+. -+.++|......
T Consensus 17 ~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-~~~pfv~v~c~~~~~~~~~~--~lfg~~~~~~~g~~~~~~ 93 (326)
T PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAALNENLLDS--ELFGHEAGAFTGAQKRHP 93 (326)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-cCCCeEEEeCCCCCHHHHHH--HHccccccccCCcccccC
Confidence 334444444567889999999999999988643322221 23345555554443322221 23553 344444432211
Q ss_pred CcceEEeccCcceEecccccccc
Q psy2760 276 DVEKLLEDLNIGGLDELSIHDFN 298 (333)
Q Consensus 276 ~a~ili~t~~i~liViDe~H~~~ 298 (333)
. .+...+-+.+.+|+++.+.
T Consensus 94 g---~l~~a~gGtL~l~~i~~L~ 113 (326)
T PRK11608 94 G---RFERADGGTLFLDELATAP 113 (326)
T ss_pred C---chhccCCCeEEeCChhhCC
Confidence 0 1122234556677777655
No 322
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.74 E-value=1.2 Score=44.10 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.8
Q ss_pred HcCCcEEEEcCCCCcHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~ 227 (333)
..+..++++||||||||...-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 357799999999999998763
No 323
>PRK05541 adenylylsulfate kinase; Provisional
Probab=85.56 E-value=1.5 Score=38.17 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=23.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.+..++++|+.|||||.++..........+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 467899999999999999865433222233334444
No 324
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.48 E-value=0.77 Score=34.24 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
|...++.+++|||||.+...
T Consensus 23 g~~tli~G~nGsGKSTllDA 42 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDA 42 (62)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56799999999999988654
No 325
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.45 E-value=0.81 Score=48.82 Aligned_cols=57 Identities=21% Similarity=0.061 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLI 267 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgll 267 (333)
..++++.||||||||..+.+|-+.. -+..+|++=|--++......-.++..+. |-++
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~--~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~f 232 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLS--WGHSSVITDLKGELWALTAGWRQKHAKNKVLRF 232 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhh--CCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4689999999999999998877643 3556888888888875554433333443 5444
No 326
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=85.32 E-value=0.62 Score=38.62 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=15.4
Q ss_pred EEEEcCCCCcHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~ 229 (333)
++++||+|||||..+..-
T Consensus 2 ii~~G~pgsGKSt~a~~l 19 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRL 19 (143)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999987653
No 327
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=85.31 E-value=1.2 Score=44.91 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=29.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
.+.++.||.|+|||.++.+..- ..+.....+..+.+=+.++...+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~---~~~~~f~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG---TTNAAFEALSAVTSGVKDLREII 93 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH---hhCCceEEeccccccHHHHHHHH
Confidence 3889999999999998875332 22344555666655555554444
No 328
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=85.31 E-value=1.8 Score=44.28 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=37.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.|.-+++.|++|+|||..++..+......+.+++|+... +-..|+..+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~r 143 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIR 143 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHH
Confidence 467889999999999999887655555566789999765 335566655533
No 329
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=85.30 E-value=1.5 Score=38.09 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
+.++|++|||||......+-.....|.++.++-+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 46789999999998766554444456677777543
No 330
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=85.25 E-value=0.57 Score=51.49 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=31.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
...|.+|.|+||+|||......+.+....|.+++++=|
T Consensus 437 ~n~N~~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~ 474 (829)
T TIGR03783 437 TNRNKFILGPSGSGKSFFTNHLVRQYYEQGTHILLVDT 474 (829)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHhcCCEEEEECC
Confidence 46789999999999999988777777777888877755
No 331
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=85.24 E-value=2.5 Score=42.69 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=36.5
Q ss_pred cCCcEEEEcCCCCcHHHH-HHHHHHHH-hcCCCeE-EEEc-ccHHHHHHHHHHHHHhcC
Q psy2760 208 EHNHVFVTAHTSAGKTVI-AEYAIALS-QNHKTRT-IYTS-PIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~-~~l~il~~-l~~g~ra-l~l~-PtraLa~Q~~~~l~~~f~ 262 (333)
+++.+.+.||||.|||.. +-+|.... +....++ ++.. -+|-=|.++.+.+.+..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~ 260 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG 260 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC
Confidence 378899999999999987 44444444 3344444 3333 347777777777766654
No 332
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=85.22 E-value=1 Score=49.34 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=29.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCC-CeEEEEcccHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKA 248 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g-~ral~l~Ptra 248 (333)
.|.+|+||||+|||+...+.+.++.+.+ .+++++=+-+.
T Consensus 437 ghT~I~G~tGaGKTvLl~~llaq~~k~~~~~iv~fDk~~g 476 (796)
T COG3451 437 GHTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVAFDKDNG 476 (796)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEcCCCc
Confidence 4899999999999998877777666555 66676655544
No 333
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.22 E-value=1.9 Score=32.36 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
+++++..|+|||..+...+......|.+++++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 467788899999998775554445677887766
No 334
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.16 E-value=1.7 Score=45.55 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=32.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHH-HHHhcC-CCeEEEEc--ccHHHHHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAI-ALSQNH-KTRTIYTS--PIKALSNQKYRDFRE 259 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~i-l~~l~~-g~ral~l~--PtraLa~Q~~~~l~~ 259 (333)
..|+.+.++||||+|||..+...+ ...... +.++.++. +.|.-+.++...+.+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~ 404 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGR 404 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhc
Confidence 357889999999999998875433 223332 34555543 456555555544433
No 335
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=85.11 E-value=0.95 Score=41.67 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHH-HHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 199 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 199 Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l 228 (333)
.++|+.. +..++++++.||.|+|||..+..
T Consensus 11 aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~ 41 (206)
T PF01078_consen 11 AKRALEIAAAGGHHLLLIGPPGTGKTMLARR 41 (206)
T ss_dssp HHHHHHHHHHCC--EEEES-CCCTHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEECCCCCCHHHHHHH
Confidence 3455554 36788999999999999998755
No 336
>PF05729 NACHT: NACHT domain
Probab=85.00 E-value=1.6 Score=36.48 Aligned_cols=22 Identities=9% Similarity=0.302 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il 231 (333)
+-+++.|+.|+|||......+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHH
Confidence 3478999999999998765443
No 337
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.98 E-value=1.8 Score=42.60 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=55.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc-cc-HHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcceEEe------
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS-PI-KALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLLE------ 282 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~-Pt-raLa~Q~~~~l~~~f~~vglltGd~~~~~~a~ili~------ 282 (333)
-+++.|..|+|||....-...+....|.++++.+ -| ||=|-++.+.|-++. ++.++.+....++-+ +...
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~~G~DpAa-VafDAi~~Ak 218 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGKEGADPAA-VAFDAIQAAK 218 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh-CCeEEccCCCCCcHH-HHHHHHHHHH
Confidence 5788999999999986655556667788888765 33 999999999998875 355555432222211 1110
Q ss_pred ccCcceEeccccccccc
Q psy2760 283 DLNIGGLDELSIHDFNK 299 (333)
Q Consensus 283 t~~i~liViDe~H~~~~ 299 (333)
.-++.++++|++-+.-+
T Consensus 219 ar~~DvvliDTAGRLhn 235 (340)
T COG0552 219 ARGIDVVLIDTAGRLHN 235 (340)
T ss_pred HcCCCEEEEeCcccccC
Confidence 01566666776655433
No 338
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=84.93 E-value=1.2 Score=48.19 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=35.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
.+++++.|.||||||.+..-.+-+...+|.|+|+.=|.-+.+..
T Consensus 185 ~~H~li~GttGSGKS~~i~~LL~~ir~RGdrAIIyD~~GeFv~~ 228 (732)
T PRK13700 185 IQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKS 228 (732)
T ss_pred hcceEEeCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHH
Confidence 57999999999999997765555666778889888888666543
No 339
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=84.80 E-value=1.5 Score=38.86 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.7
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~i 230 (333)
+.++|++|||||..+..-.
T Consensus 2 i~i~G~sgsGKttla~~l~ 20 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLS 20 (179)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999886543
No 340
>PLN02165 adenylate isopentenyltransferase
Probab=84.78 E-value=0.4 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|..+++.||||||||..+..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4467899999999999998865
No 341
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.67 E-value=1.6 Score=37.33 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=26.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
-+.++|+.+||||......+-...+.|.++.++..+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 368999999999999887776667778887766533
No 342
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=84.50 E-value=0.97 Score=36.52 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
+++.||.|+|||..+...+-. + +...+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~-l--~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-L--GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-T--TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhh-c--cccccccccc
Confidence 689999999999988765432 2 3445555443
No 343
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.44 E-value=1.6 Score=43.57 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCcHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~ 227 (333)
.+..++++||||||||....
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45579999999999998763
No 344
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.26 E-value=1.4 Score=47.40 Aligned_cols=56 Identities=25% Similarity=0.159 Sum_probs=42.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgll 267 (333)
..++++.||||||||..+.+|-+... ...+|++=|--++..... .+++.++.|-++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~--~~S~VV~D~KGEl~~~Ta-~~R~~~G~V~~F 199 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTW--PGSAIVHDIKGENWQLTA-GFRARFGRVLLF 199 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhC--CCCEEEEeCcchHHHHHH-HHHHhCCeEEEE
Confidence 47999999999999999999876543 356777788888876554 456667765444
No 345
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=84.25 E-value=0.76 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
++-+++.||||||||..++-..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA 25 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFP 25 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3458999999999999876543
No 346
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=84.22 E-value=1.9 Score=42.77 Aligned_cols=52 Identities=8% Similarity=0.238 Sum_probs=39.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH-HHhc--CCCeEEEEcccHH-HHHHHHHHHHHhc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIA-LSQN--HKTRTIYTSPIKA-LSNQKYRDFRETF 261 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il-~~l~--~g~ral~l~Ptra-La~Q~~~~l~~~f 261 (333)
+..+++|+.|||||.++...++ .... ++.+++++-|+.. |..-++..+...+
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i 57 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLL 57 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHH
Confidence 3567899999999999887655 4444 6788999989855 6666777776543
No 347
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.17 E-value=3.7 Score=48.19 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHH--HHHHHh--cCCCeEEEEcccHHHHHHHH
Q psy2760 193 FELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEY--AIALSQ--NHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l--~il~~l--~~g~ral~l~PtraLa~Q~~ 254 (333)
..|++-|++|+..++ .++.+++.|..|+|||.+... .++..+ ..+.+++.++||-.-+..+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 368999999999976 447899999999999988533 222222 34677888999966665553
No 348
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=83.98 E-value=2.1 Score=41.00 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~ 244 (333)
|.-+.++|++|+|||..++..+..... .+.+++|+.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 677899999999999998876654331 234899986
No 349
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=83.98 E-value=1.8 Score=40.32 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=30.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~P 245 (333)
.|.-+++.|.||.|||..++-.+...... +..++|++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 45678999999999999998877765554 689999875
No 350
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=83.87 E-value=1.2 Score=47.74 Aligned_cols=56 Identities=27% Similarity=0.126 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLI 267 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgll 267 (333)
..++++.||||||||..+.+|-+... ...+|++=|--++........ +..+. |-++
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~--~gS~VV~DpKGE~~~~Ta~~R-~~~G~~V~~F 195 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF--KGSVIALDVKGELFELTSRAR-KASGDAVFKF 195 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC--CCCEEEEeCCchHHHHHHHHH-HhCCCEEEEe
Confidence 45999999999999999998876443 346777788888887765444 44665 4433
No 351
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.83 E-value=2.3 Score=42.48 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=50.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEEEeCCCCCCCCcceEEec
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLIDDLPPVFPDVEKLLED 283 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vglltGd~~~~~~a~ili~t 283 (333)
.|.-+++.|++|+|||...+..+......+.+++|+.-. +-..|+..+..+ ++ ++.++ .......-.. .+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~r-lg~~~~~l~l~-~e~~le~I~~-~i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADR-LGISTENLYLL-AETNLEDILA-SIEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHH-cCCCcccEEEE-ccCcHHHHHH-HHHh
Confidence 367889999999999998876555445566789998754 334565555433 32 12211 1111100000 0112
Q ss_pred cCcceEecccccccc
Q psy2760 284 LNIGGLDELSIHDFN 298 (333)
Q Consensus 284 ~~i~liViDe~H~~~ 298 (333)
....++|+|+++.+.
T Consensus 157 ~~~~lVVIDSIq~l~ 171 (372)
T cd01121 157 LKPDLVIIDSIQTVY 171 (372)
T ss_pred cCCcEEEEcchHHhh
Confidence 356788999998763
No 352
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=83.82 E-value=1.9 Score=47.11 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
|.-+.+++|+|+|||..++..+......|.+++|+.....+...
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~ 103 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD 103 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH
Confidence 67889999999999999988777777778899999877666644
No 353
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=83.80 E-value=2.5 Score=41.58 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 193 FELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 193 f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
|.+++--.+++.. +..++++++.||+|+|||..+....
T Consensus 47 y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA 85 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIA 85 (327)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHH
Confidence 4566655554444 5778999999999999999887543
No 354
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=83.76 E-value=2 Score=39.03 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr 247 (333)
...++.+.+++|-|||.+++--.+.+...|.+++++-=.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 4569999999999999999998889999999999875443
No 355
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=83.75 E-value=2.2 Score=41.93 Aligned_cols=46 Identities=26% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
|+-+-+.+|+|||||..++..+......+..++|+-|..+|-....
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a 98 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYA 98 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHH
Confidence 7788899999999999999888766555666666666555544433
No 356
>PRK00131 aroK shikimate kinase; Reviewed
Probab=83.52 E-value=0.73 Score=39.35 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..++++|++|||||.++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~L 24 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLL 24 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999998654
No 357
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.44 E-value=0.62 Score=45.28 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHH---------cCCcEEEEcCCCCcHHHHHHHHHHHHh---cCC---CeEEE-EcccHHHHHHHHHHHH
Q psy2760 195 LDVFQKQAIIKLE---------EHNHVFVTAHTSAGKTVIAEYAIALSQ---NHK---TRTIY-TSPIKALSNQKYRDFR 258 (333)
Q Consensus 195 l~~~Q~~ai~~l~---------~g~~vlv~apTGSGKTl~~~l~il~~l---~~g---~ral~-l~PtraLa~Q~~~~l~ 258 (333)
-++.-.+++..+. .-.+++++|+|+.|||.+..--.-.+. ..+ ..+++ -+|...-....+..+-
T Consensus 38 gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 38 GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 4565666666641 224899999999999987643222111 111 12444 4676666666665554
Q ss_pred HhcCC-cEEEeCCCCCCCCcceEEeccCcceEecccccccc
Q psy2760 259 ETFQD-VGLIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFN 298 (333)
Q Consensus 259 ~~f~~-vglltGd~~~~~~a~ili~t~~i~liViDe~H~~~ 298 (333)
..++- +.--........+..-++...++-++|+||+|.+-
T Consensus 118 ~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 118 EALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 43321 11100000000011112334578889999999864
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=83.33 E-value=7.6 Score=42.46 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 197 VFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 197 ~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l~il 231 (333)
+.=.+++..+. ...|+++.||+|+|||.++.....
T Consensus 193 ~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 193 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 33344444443 356999999999999999866443
No 359
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=83.29 E-value=2.1 Score=46.25 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCC-eEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKT-RTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~-ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
..|.+|.|+||||||......+......+. +++++=|-++ +..+.+.+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~l~~~~~~~~~~~v~iiD~~~~-----~~~~~~~~gG 484 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNFLLAQMQKYGGMTIFAFDKDRG-----MEIFIRAFGG 484 (785)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhccCCCeEEEEeCCCC-----hHHhhhccCC
Confidence 568999999999999988776666666666 8999888876 3445555554
No 360
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=83.25 E-value=3.1 Score=39.66 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=23.0
Q ss_pred HHHHHHH-HHcCC--cEEEEcCCCCcHHHHHHHHHH
Q psy2760 199 QKQAIIK-LEEHN--HVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 199 Q~~ai~~-l~~g~--~vlv~apTGSGKTl~~~l~il 231 (333)
..+.+.. +..++ +++++||+|+|||..+....-
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3333444 34555 799999999999998866443
No 361
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.24 E-value=4.7 Score=41.73 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=48.3
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEecc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDL 284 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~ 284 (333)
...+.+|++.|++|+||+.++...-....+.+. .++.+...++.....+ ...|+. -|.++|....... .+...
T Consensus 207 a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~-p~v~v~c~~~~~~~~e--~~lfG~~~g~~~ga~~~~~g---~~~~a 280 (509)
T PRK05022 207 AASDLNVLILGETGVGKELVARAIHAASPRADK-PLVYLNCAALPESLAE--SELFGHVKGAFTGAISNRSG---KFELA 280 (509)
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCC-CeEEEEcccCChHHHH--HHhcCccccccCCCcccCCc---chhhc
Confidence 467789999999999999988764433333333 3344433333332222 134664 3455554322111 11223
Q ss_pred CcceEecccccccccc
Q psy2760 285 NIGGLDELSIHDFNKH 300 (333)
Q Consensus 285 ~i~liViDe~H~~~~~ 300 (333)
+-+.+.+|+++.+...
T Consensus 281 ~gGtL~ldeI~~L~~~ 296 (509)
T PRK05022 281 DGGTLFLDEIGELPLA 296 (509)
T ss_pred CCCEEEecChhhCCHH
Confidence 4455678888877643
No 362
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=83.21 E-value=2.8 Score=46.14 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+.|.+|.|+||||||+..-..+...+..+.+++++=|-++ +..+.+.+++
T Consensus 449 N~N~~I~G~sGsGKS~l~k~l~~~~~~~g~~viiiD~~~s-----y~~l~~~lGG 498 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDG-----YKSLCENMGG 498 (844)
T ss_pred cccEEEEcCCCCCHHHHHHHHHHhhhccCCEEEEEeCCCC-----HHHHHHHcCC
Confidence 4589999999999999887655556667888888877765 3344455554
No 363
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.07 E-value=2 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
...|+++.||+|+|||.++.....
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345999999999999999866443
No 364
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=83.06 E-value=1.6 Score=47.84 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKA 248 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~Ptra 248 (333)
.|.+|.|+||||||+.....+.+... .|.+++++=|-++
T Consensus 442 gn~~I~G~tGsGKS~l~~~l~~~~~~~~g~~v~i~D~~~s 481 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLLALMALQFRRYPGAQVFAFDFGGS 481 (811)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhcCCCeEEEEeCCCC
Confidence 38999999999999987775544444 4677777766543
No 365
>KOG1805|consensus
Probab=83.02 E-value=3.5 Score=45.75 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 194 ~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.++..|++|+..+ ......+|.|=+|+|||..-...|-.....|.+++..+=|..=++-+.-+++.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc
Confidence 6899999999886 55567789999999999987766665666788999999998888888877765
No 366
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.83 E-value=2.3 Score=37.56 Aligned_cols=34 Identities=21% Similarity=0.039 Sum_probs=29.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
-+.|..++|.|||.+++--.+.+...|.+++++-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4677888899999999988888888899999953
No 367
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=82.74 E-value=1.5 Score=47.95 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=34.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHH-HhcC-CCeEEEEcccHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIAL-SQNH-KTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~-~l~~-g~ral~l~PtraLa~Q~~ 254 (333)
.-|+=|.+.||.|||.+|+-.|.. +..- -.+-|+|||+.|.-.-++
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~ 121 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVF 121 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhH
Confidence 358889999999999999998862 2222 357899999988655533
No 368
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=82.58 E-value=1.6 Score=44.74 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 195 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 195 l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+.......+..+..+++++++||+|+|||..+..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 3445555666678899999999999999988864
No 369
>PRK00889 adenylylsulfate kinase; Provisional
Probab=82.58 E-value=2.3 Score=36.93 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.|..+++.|+.|||||.++....-.....+..++++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467889999999999999876443332344445544
No 370
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=82.53 E-value=2.1 Score=45.68 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=42.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC--CcEEEe
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ--DVGLID 268 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~--~vgllt 268 (333)
..++++.||||||||..+.+|-+. .-+..++++=|--++...... +++.++ +|-++.
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL--~~~gS~VV~DpKgE~~~~Ta~-~R~~~Gg~~V~vfd 269 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTAL--KYGGPLVCLDPSTEVAPMVCE-HRRQAGNRKVIVLD 269 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhh--cCCCCEEEEEChHHHHHHHHH-HHHHcCCCcEEEEe
Confidence 369999999999999999998643 335568888898888766664 555565 365553
No 371
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=82.50 E-value=2.9 Score=42.03 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTS 244 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~ 244 (333)
+..|.-+++.|++|+|||..++-.+... ...+.+++|++
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567888999999999999888766543 35678888886
No 372
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=82.26 E-value=2.1 Score=40.29 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCe-EEEEcc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTR-TIYTSP 245 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~r-al~l~P 245 (333)
-++++.|++|||||......+ ..+....+ +++++|
T Consensus 14 fr~viIG~sGSGKT~li~~lL-~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLL-YYLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HhhcccCCEEEEEec
Confidence 378999999999998655443 33333333 333444
No 373
>KOG1806|consensus
Probab=82.10 E-value=2.2 Score=47.60 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH--HHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~i--l~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.+++-|.+|+..-.+.....+.+|+|.|||-++.--+ +++-.+..|+++++....--+|.++.+.+
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHh
Confidence 5688999999887778899999999999998875543 46667889999999988888888876654
No 374
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=81.96 E-value=3.9 Score=37.49 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=23.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH---HhcCCCeEEEEcc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIAL---SQNHKTRTIYTSP 245 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~---~l~~g~ral~l~P 245 (333)
.++++||+|+|||.. +.++.. ...++.+++|+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH
Confidence 589999999999985 334432 2346788998764
No 375
>PRK00300 gmk guanylate kinase; Provisional
Probab=81.96 E-value=1.4 Score=39.20 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.|+-+++.||+|||||..+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l 25 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKAL 25 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4788999999999999876543
No 376
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=81.83 E-value=2.8 Score=40.05 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45899999999999998854
No 377
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=81.81 E-value=1.9 Score=47.59 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=28.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKA 248 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~Ptra 248 (333)
.|.+|.||||||||+.....+.+..+ .+.+++++=|-++
T Consensus 489 gh~~I~G~tGsGKS~l~~~L~~~~~k~~~~~v~i~D~~~s 528 (852)
T PRK13891 489 GHTFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAFDKGMS 528 (852)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEEcCCcc
Confidence 47899999999999988766555443 5667777766544
No 378
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=81.79 E-value=0.82 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
-.|..+++.||+|+|||..+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH
Confidence 5789999999999999987655
No 379
>PHA02244 ATPase-like protein
Probab=81.76 E-value=2 Score=43.13 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.7
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+.++++.||||+|||.++...
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHH
Confidence 578899999999999999877553
No 380
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=81.74 E-value=0.87 Score=38.50 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2760 205 KLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 250 (333)
Q Consensus 205 ~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa 250 (333)
.+..|.-+++.|+-|||||...- +++..+ |...-+.+||=.|+
T Consensus 11 ~l~~g~vi~L~GdLGaGKTtf~r-~l~~~l--g~~~~V~SPTF~l~ 53 (123)
T PF02367_consen 11 ILKPGDVILLSGDLGAGKTTFVR-GLARAL--GIDEEVTSPTFSLV 53 (123)
T ss_dssp HHSS-EEEEEEESTTSSHHHHHH-HHHHHT--T--S----TTTTSE
T ss_pred hCCCCCEEEEECCCCCCHHHHHH-HHHHHc--CCCCCcCCCCeEEE
Confidence 35667778899999999998765 444555 33347789996665
No 381
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=81.66 E-value=1.3 Score=45.45 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=22.3
Q ss_pred HHHHHH-HHcCCcEEEEcCCCCcHHHHHH
Q psy2760 200 KQAIIK-LEEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 200 ~~ai~~-l~~g~~vlv~apTGSGKTl~~~ 227 (333)
++|+.. +..|+|+++.||.|||||+.+-
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla~ 216 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLAS 216 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhhh
Confidence 444444 3788999999999999998864
No 382
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=81.65 E-value=2 Score=45.94 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEe
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLID 268 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vgllt 268 (333)
..++++.||||||||..+.+|-+. .-+..++++=|-.++...+.. +++.++. |-++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL--~~~gS~VV~DpKgEl~~~Ta~-~R~~~G~~V~vfd 281 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL--KWGGPLVVLDPSTEVAPMVSE-HRRDAGREVIVLD 281 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh--cCCCCEEEEeCcHHHHHHHHH-HHHHCCCeEEEEe
Confidence 469999999999999999998653 334567777798888776655 4455664 55543
No 383
>PRK13768 GTPase; Provisional
Probab=81.62 E-value=2.2 Score=40.07 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
-+++.++.|+|||..+..........|.+++++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 578899999999997755443334456666665
No 384
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=81.59 E-value=3 Score=40.34 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEcc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSP 245 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~P 245 (333)
|.-+.++||+|+|||..++..+..... .+.+++|+.-
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 678899999999999998876664432 2358888863
No 385
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=81.57 E-value=4.6 Score=41.96 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEecc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDL 284 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~ 284 (333)
+..+..+++.|.||+||+.++-..- .....+.+..+.+...++..+..+. ..|+. -|-++|....... ++...
T Consensus 224 A~~~~pvlI~GE~GtGK~~lA~aiH-~~s~r~~~pfv~inca~~~~~~~e~--elFG~~~~~~~~~~~~~~g---~~e~a 297 (520)
T PRK10820 224 AMLDAPLLITGDTGTGKDLLAYACH-LRSPRGKKPFLALNCASIPDDVVES--ELFGHAPGAYPNALEGKKG---FFEQA 297 (520)
T ss_pred hCCCCCEEEECCCCccHHHHHHHHH-HhCCCCCCCeEEeccccCCHHHHHH--HhcCCCCCCcCCcccCCCC---hhhhc
Confidence 4678899999999999999886632 2222233455555655554444332 34654 2333332211100 11122
Q ss_pred CcceEeccccccccc
Q psy2760 285 NIGGLDELSIHDFNK 299 (333)
Q Consensus 285 ~i~liViDe~H~~~~ 299 (333)
+-+.+.+|+++.+..
T Consensus 298 ~~GtL~LdeI~~L~~ 312 (520)
T PRK10820 298 NGGSVLLDEIGEMSP 312 (520)
T ss_pred CCCEEEEeChhhCCH
Confidence 345566788877654
No 386
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=81.49 E-value=1.5 Score=38.14 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
|+-+++.||+|||||..+...+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999765543
No 387
>PRK08506 replicative DNA helicase; Provisional
Probab=81.41 E-value=3.7 Score=42.20 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
+..|.-+++.|.||.|||..++-.+......|.+++|++.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSl 228 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSL 228 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeC
Confidence 3557788999999999999988776666667788888864
No 388
>PHA00350 putative assembly protein
Probab=81.40 E-value=3.5 Score=41.69 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHH-HHHHHhcCCCeE
Q psy2760 212 VFVTAHTSAGKTVIAEY-AIALSQNHKTRT 240 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l-~il~~l~~g~ra 240 (333)
.++.|..|||||+.+.. -|+.++..|+++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 57899999999999887 466677777544
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=81.36 E-value=2.7 Score=40.98 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh------cCCCeEEEEcccH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTRTIYTSPIK 247 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l------~~g~ral~l~Ptr 247 (333)
|.-..++|+.|+|||..++..+.... ..+.+++|+.-.-
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 67788999999999999876554322 2357899987443
No 390
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.32 E-value=4.5 Score=41.33 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~PtraLa~Q~~~~l 257 (333)
..++++|++|+|||... .++...+ .++.+++|+.+ ..+.++....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 46899999999999665 4444322 45678888765 45555554444
No 391
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=81.31 E-value=4 Score=43.40 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=25.9
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTS 244 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~ 244 (333)
+..+++++++||+|+|||.++.... ..+... ..++|+.
T Consensus 34 ~~~~~~~ll~G~pG~GKT~la~~la-~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 34 AKQKRNVLLIGEPGVGKSMLAKAMA-ELLPDEELEDILVYP 73 (608)
T ss_pred HHcCCCEEEECCCCCCHHHHHHHHH-HHcCchhheeEEEEe
Confidence 3677899999999999998876533 333332 3445443
No 392
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=81.23 E-value=6 Score=46.99 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHH--HHHh--cCCCeEEEEcccHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAI--ALSQ--NHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~--g~~vlv~apTGSGKTl~~~l~i--l~~l--~~g~ral~l~PtraLa~Q~~ 254 (333)
.+.|++.|++|+..++. ++.+++.|..|+|||.+.-..+ +..+ ..+.+++.++||-.=|.++.
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 34689999999999865 4688999999999998864322 2222 24567888999966565443
No 393
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.11 E-value=1.2 Score=46.18 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH--HHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~i--l~~l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.+...|++|.-..-.|.- .+.|-.|||||.+..+-. +...++.-++++..-|+.|+.++.+...+.
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHH
Confidence 356677766544434444 678889999999877633 345567789999988999888887665553
No 394
>PHA00729 NTP-binding motif containing protein
Probab=81.07 E-value=3.6 Score=38.42 Aligned_cols=47 Identities=9% Similarity=-0.058 Sum_probs=29.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH-------------hcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALS-------------QNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~-------------l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
.++++.|++|+|||..+....... ...+.+++ ++...+|...+...+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~-fid~~~Ll~~L~~a~ 77 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSY-FFELPDALEKIQDAI 77 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEE-EEEHHHHHHHHHHHH
Confidence 489999999999998876533221 12334444 456667776665443
No 395
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.02 E-value=5.3 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
...|+++.||+|.|||.++.....
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHH
Confidence 445999999999999999866443
No 396
>KOG0060|consensus
Probab=81.00 E-value=1.4 Score=46.30 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
+|++++||||+|+|||-.+-.
T Consensus 460 ~g~~LLItG~sG~GKtSLlRv 480 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSLLRV 480 (659)
T ss_pred CCCeEEEECCCCCchhHHHHH
Confidence 499999999999999977644
No 397
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=80.97 E-value=1.5 Score=39.61 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il 231 (333)
...++++||.|||||..|.....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~ 25 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN 25 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhc
Confidence 46799999999999998876554
No 398
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=80.95 E-value=4.2 Score=35.74 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
|+.+++.|+.|||||..+-...-.....|.+++++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 67899999999999988766433222345555544
No 399
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=80.86 E-value=1.3 Score=39.24 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
|..+++.||.|||||.++-..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l 22 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAAL 22 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 678999999999999987654
No 400
>KOG0745|consensus
Probab=80.56 E-value=1 Score=46.02 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
..-|+++.+|||||||+.+.-
T Consensus 225 eKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred ecccEEEECCCCCchhHHHHH
Confidence 456999999999999998754
No 401
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=80.54 E-value=2.3 Score=37.99 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHHhcCCCeEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYA-IALSQNHKTRTIY 242 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~-il~~l~~g~ral~ 242 (333)
.+++|..|||||..+..- +..++..|.+++.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 578999999999988776 6666766655554
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=80.50 E-value=3.1 Score=35.78 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+.+.|+.|+|||.............+.+++++
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii 33 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVL 33 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 57889999999998766554444556666664
No 403
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=80.40 E-value=1.6 Score=45.27 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.3
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..++++++.+|+|+|||..+..
T Consensus 209 ~~g~~vlliG~pGsGKTtlar~ 230 (499)
T TIGR00368 209 AGGHNLLLFGPPGSGKTMLASR 230 (499)
T ss_pred cCCCEEEEEecCCCCHHHHHHH
Confidence 5678999999999999998754
No 404
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=80.39 E-value=1.2 Score=43.35 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+-++++||||||||.++...
T Consensus 5 ~~i~i~GptgsGKt~la~~l 24 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIEL 24 (307)
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 45789999999999988754
No 405
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=80.37 E-value=1.9 Score=42.37 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHH-HHhcC-CCeEEEEcccHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIA-LSQNH-KTRTIYTSPIKALSN 251 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il-~~l~~-g~ral~l~PtraLa~ 251 (333)
-.+|.|||||||+-...-.+- +.+.+ .-.++||+|++..+-
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 458899999999964332221 12222 357899999876543
No 406
>PRK07261 topology modulation protein; Provisional
Probab=80.36 E-value=1.3 Score=38.98 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=16.1
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
.++++|++|||||..+..
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999999865
No 407
>PRK08118 topology modulation protein; Reviewed
Probab=80.35 E-value=1.3 Score=38.93 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.++|+||.|||||..+-..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L 21 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQL 21 (167)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999877543
No 408
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=80.34 E-value=2.5 Score=35.51 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 201 QAIIKLEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 201 ~ai~~l~~g~~vlv~apTGSGKTl~~~l 228 (333)
++-.....+.+|++.|+.|+||+.++..
T Consensus 13 ~l~~~a~~~~pvli~GE~GtGK~~~A~~ 40 (138)
T PF14532_consen 13 QLERLAKSSSPVLITGEPGTGKSLLARA 40 (138)
T ss_dssp HHHHHHCSSS-EEEECCTTSSHHHHHHC
T ss_pred HHHHHhCCCCcEEEEcCCCCCHHHHHHH
Confidence 3333346778999999999999998754
No 409
>CHL00181 cbbX CbbX; Provisional
Probab=80.21 E-value=3.6 Score=39.47 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il 231 (333)
+.++++.||+|+|||.++....-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999876543
No 410
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=79.85 E-value=3.5 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=23.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+++++..|+|||.+...........+.+++++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 78899999999998766554444456666654
No 411
>PRK14530 adenylate kinase; Provisional
Probab=79.83 E-value=1.7 Score=39.37 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..+++.||+|||||..+...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~L 23 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNL 23 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999987654
No 412
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=79.74 E-value=1.6 Score=40.91 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
..++++.||+|+|||.++....
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999986643
No 413
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=79.58 E-value=1.4 Score=38.30 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
|+-+++.||+|||||.++-.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~ 20 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDY 20 (179)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35688999999999999865
No 414
>PRK06696 uridine kinase; Validated
Probab=79.48 E-value=3.1 Score=37.97 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
-|.++|++|||||..+....
T Consensus 24 iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 24 RVAIDGITASGKTTFADELA 43 (223)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56789999999999886543
No 415
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=79.43 E-value=3.1 Score=36.95 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.6
Q ss_pred EEEEcCCCCcHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l 228 (333)
+.+.||+|||||..+..
T Consensus 2 igi~G~~GsGKSTl~~~ 18 (198)
T cd02023 2 IGIAGGSGSGKTTVAEE 18 (198)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999998754
No 416
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=79.43 E-value=1.5 Score=38.25 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
|+.++++|+.|||||.++-...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~ 23 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQ 23 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999986543
No 417
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=79.42 E-value=1.8 Score=36.64 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=15.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~i 230 (333)
++++||||||||.++....
T Consensus 2 i~i~GpsGsGKstl~~~L~ 20 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLL 20 (137)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999998665443
No 418
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.33 E-value=5.2 Score=39.29 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYT 243 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l 243 (333)
..+++++||+|+|||.+....+-.... .+...+|+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 367999999999999987765543222 24566666
No 419
>PRK05748 replicative DNA helicase; Provisional
Probab=79.20 E-value=3.3 Score=42.07 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=34.8
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
+..|.-+++.|+||.|||..++--+... ...|..++|++.- .-..|+..++
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~ 251 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRM 251 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHH
Confidence 3557789999999999999888765543 3557778887532 2334444444
No 420
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=79.14 E-value=8.5 Score=38.53 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEec
Q psy2760 205 KLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLED 283 (333)
Q Consensus 205 ~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t 283 (333)
....+.++++.+++|+||+.++..........+ ..++.+...++....... ..|+. -|.++|....... ....
T Consensus 162 ~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~-~~~~~i~c~~~~~~~~~~--~lfg~~~~~~~~~~~~~~g---~~~~ 235 (457)
T PRK11361 162 IALSQASVLISGESGTGKELIARAIHYNSRRAK-GPFIKVNCAALPESLLES--ELFGHEKGAFTGAQTLRQG---LFER 235 (457)
T ss_pred HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCC-CCeEEEECCCCCHHHHHH--HhcCCCCCCCCCCCCCCCC---ceEE
Confidence 345677999999999999988865433322222 234444444444433322 34664 4555555432211 1223
Q ss_pred cCcceEecccccccccc
Q psy2760 284 LNIGGLDELSIHDFNKH 300 (333)
Q Consensus 284 ~~i~liViDe~H~~~~~ 300 (333)
.+-+.+++|+++.+...
T Consensus 236 a~~gtl~ld~i~~l~~~ 252 (457)
T PRK11361 236 ANEGTLLLDEIGEMPLV 252 (457)
T ss_pred CCCCEEEEechhhCCHH
Confidence 34566778888877543
No 421
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.98 E-value=3.6 Score=36.84 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=29.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
-+.+.+++|.|||.+++--.+.+...|.+++++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 467788899999999998888888999999877
No 422
>PF13173 AAA_14: AAA domain
Probab=78.82 E-value=3.3 Score=34.22 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
++.+++.||.|+|||......+-... ...+++|+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 56789999999999998766554333 445677764
No 423
>KOG2228|consensus
Probab=78.68 E-value=3.8 Score=40.81 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=50.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE--c--------ccHHHHHHHHHHHHHhcCCcEEEeCCCCCCCC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT--S--------PIKALSNQKYRDFRETFQDVGLIDDLPPVFPD 276 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l--~--------PtraLa~Q~~~~l~~~f~~vglltGd~~~~~~ 276 (333)
-++.++++.||-|||||..--.........|-..+.+ - -.+.++.|...++.+ .+...|....+..
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~----~~k~~gsfte~l~ 122 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNR----IVKSFGSFTENLS 122 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhh----hheeecccchhHH
Confidence 3567999999999999976544433322334444433 1 234455555555543 3333333332100
Q ss_pred c--ce---EEecc-CcceEeccccccccccCcCc
Q psy2760 277 V--EK---LLEDL-NIGGLDELSIHDFNKHLKFW 304 (333)
Q Consensus 277 a--~i---li~t~-~i~liViDe~H~~~~~~R~~ 304 (333)
. .+ =..++ .-.++|.||+..|..+.|..
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQt 156 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQT 156 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhH
Confidence 0 00 01223 23667889999998888763
No 424
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=78.62 E-value=3.4 Score=36.75 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~i 230 (333)
|.|+||+|||||..+....
T Consensus 2 IgI~G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLA 20 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999886544
No 425
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=78.54 E-value=9.2 Score=41.41 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHH---HcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 192 PFELDVFQKQAIIKL---EEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l---~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
|..++|.=.+-|+.+ ...+--++.+|=|.|||.+..+.+..... .+.+++|.+|...-+++++++++..+.
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 556666666666664 55667788999999999998765553332 588999999999999999988766554
No 426
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=78.47 E-value=0.81 Score=41.10 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=28.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g-~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
++.|+-|-|||.+..+++......+ .++++.+|+.+=++..++.+...+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l 50 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGL 50 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhc
Confidence 5789999999999888776544444 479999999998888887664433
No 427
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=78.44 E-value=5.9 Score=40.84 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=51.8
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
.+.-+|+|.|.||+||-+++-.---...+ ..+..+-+.+-++-.+..+. +.||. =|-+||........ +.-.+
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R-~~~PFVavNcaAip~~l~ES--ELFGhekGAFTGA~~~r~G~---fE~A~ 235 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPR-AKGPFIAVNCAAIPENLLES--ELFGHEKGAFTGAITRRIGR---FEQAN 235 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCcc-cCCCceeeecccCCHHHHHH--HhhcccccCcCCcccccCcc---eeEcC
Confidence 56789999999999999988653222222 22333334444444444432 45875 68888887655432 23345
Q ss_pred cceEecccccccc
Q psy2760 286 IGGLDELSIHDFN 298 (333)
Q Consensus 286 i~liViDe~H~~~ 298 (333)
-+.+.+||+..+.
T Consensus 236 GGTLfLDEI~~mp 248 (464)
T COG2204 236 GGTLFLDEIGEMP 248 (464)
T ss_pred CceEEeeccccCC
Confidence 5666677777643
No 428
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.33 E-value=5.6 Score=42.42 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=28.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~--l~~g~ral~l~PtraLa~Q~~~ 255 (333)
.++++|++|+|||.......... ...+.+++|+. ..+++++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHH
Confidence 48999999999997654322222 23477888865 4455555443
No 429
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=78.33 E-value=1.3 Score=37.96 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.7
Q ss_pred EEEEcCCCCcHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~ 229 (333)
++++||+|||||.++...
T Consensus 1 i~l~G~~GsGKSTla~~l 18 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASAL 18 (163)
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 468999999999887653
No 430
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=78.18 E-value=7 Score=34.58 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=34.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
++|.|+..||||..++-.+ ...+.+.+|++-.+..=.++.+++.+
T Consensus 1 ilv~GG~rSGKS~~Ae~la---~~~~~~~~YiAT~~~~D~em~~RI~~ 45 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLA---LSFGGPVTYIATARPFDEEMRERIAR 45 (167)
T ss_dssp EEEEESTTSSHHHHHHHHH---TS--SCEEEEESSHHHHHHHHHHHHH
T ss_pred CEEeCCCCcchHHHHHHHH---HhcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 5899999999999887655 34457899999888886666666644
No 431
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=78.16 E-value=4 Score=38.43 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh------cCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l------~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
|.-.=++|+.|||||-.++-.++... ..+.+++|+--....-.+...++.+++
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence 34566899999999999877555332 236789998533333333333333333
No 432
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=77.93 E-value=3.5 Score=37.90 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.3
Q ss_pred EEEEcCCCCcHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l 228 (333)
+.+.||+|||||..+..
T Consensus 2 igI~G~sGSGKTTla~~ 18 (220)
T cd02025 2 IGIAGSVAVGKSTTARV 18 (220)
T ss_pred EEeeCCCCCCHHHHHHH
Confidence 46789999999998754
No 433
>PRK07667 uridine kinase; Provisional
Probab=77.90 E-value=3.8 Score=36.59 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.4
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
-|.++|++|||||..+...
T Consensus 19 iIgI~G~~gsGKStla~~L 37 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANL 37 (193)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4577999999999987543
No 434
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=77.82 E-value=3.3 Score=39.81 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
|+-+=+++|-|||||.+++.++..+...+.+++|+--..+|--+-...+..
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~ 110 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGV 110 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 667778999999999999999998888888999986666555555544444
No 435
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=77.81 E-value=2.8 Score=35.94 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=13.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.++.+++.|+.|+|||.....
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~ 43 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRA 43 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 357899999999999988654
No 436
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=77.79 E-value=7.2 Score=37.25 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=27.5
Q ss_pred HcCC-cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 207 EEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 207 ~~g~-~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
..|+ -+.++++-|||||++.- +++..+..+..++++.|
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~ 86 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVID 86 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEec
Confidence 4444 78999999999999998 66666655555554443
No 437
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=77.39 E-value=4 Score=41.07 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=30.1
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSP 245 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~P 245 (333)
+..|.-+++.|++|+|||..++--+... ...|..++|++.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl 232 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL 232 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3557788999999999998887655543 345778888863
No 438
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=77.30 E-value=15 Score=39.76 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=61.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCC------cEEEeCCCCC-----C
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD------VGLIDDLPPV-----F 274 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~------vglltGd~~~-----~ 274 (333)
..+--+...|=-.|||.+...-+...+ ..|.+++|++|.+..++.+++++...+.. +..+.|+ .+ +
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~n 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPD 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecC
Confidence 556778899999999997663222233 46999999999999999999998776542 3333442 22 1
Q ss_pred CC-cceEEecc---------CcceEecccccccccc
Q psy2760 275 PD-VEKLLEDL---------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 275 ~~-a~ili~t~---------~i~liViDe~H~~~~~ 300 (333)
.. ..+...+. +..++++||++.+...
T Consensus 332 G~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 332 GSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred CCccEEEEEeccCCCCccCCcccEEEEechhhCCHH
Confidence 11 12333311 4788899999987653
No 439
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=77.19 E-value=3.7 Score=38.02 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
++++|+.|||||..+....-.....+..++++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 68899999999999865443222334455554
No 440
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=77.02 E-value=5.3 Score=35.00 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=24.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
..+.-++++|++|||||.++-...-.....+..++++
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l 52 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVL 52 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 5577889999999999987655333222334445554
No 441
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=76.99 E-value=4.3 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
++++|++|||||..+....-.....+..++++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i 33 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 67899999999987765443332344445444
No 442
>PRK13531 regulatory ATPase RavA; Provisional
Probab=76.96 E-value=2.4 Score=43.93 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.3
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 205 KLEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 205 ~l~~g~~vlv~apTGSGKTl~~~l 228 (333)
.+..|.++++.||+|+|||.++..
T Consensus 35 aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred HHccCCCEEEECCCChhHHHHHHH
Confidence 358999999999999999998854
No 443
>PRK03846 adenylylsulfate kinase; Provisional
Probab=76.87 E-value=4.2 Score=36.30 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=23.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.++.-+.++|+.|||||.++....-.....+..++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467888999999999987655332222334445554
No 444
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=76.77 E-value=2.1 Score=36.62 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=30.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 253 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~ 253 (333)
..|..+++.|+-|+|||...-. +...+. ...-+-+||=.|++.-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~-l~~~lg--~~~~v~SPTf~lv~~Y 63 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQG-LLQGLG--IQGNVTSPTFTLVNEY 63 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHH-HHHHcC--CCCcccCCCeeeeeec
Confidence 4677889999999999987643 333332 2234668997776653
No 445
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=76.72 E-value=2.6 Score=37.04 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il 231 (333)
++.++++||+|||||.+....+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998876553
No 446
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=76.72 E-value=4.6 Score=40.56 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=41.3
Q ss_pred ccCCCCC-CHHHHHHHHHHHcCC--cEEEEcCCCCcHHHHHHHHHH-HHhc--CCCeEEEEcccHHHHH
Q psy2760 189 HTWPFEL-DVFQKQAIIKLEEHN--HVFVTAHTSAGKTVIAEYAIA-LSQN--HKTRTIYTSPIKALSN 251 (333)
Q Consensus 189 ~~~~f~l-~~~Q~~ai~~l~~g~--~vlv~apTGSGKTl~~~l~il-~~l~--~g~ral~l~PtraLa~ 251 (333)
..|+..+ +..|.-|+..++... -|.+.|+.|+|||+.++.|.+ +.+. .-.++|+.=|+..+..
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 3455544 456777777775443 567799999999999998776 3332 2345666667665543
No 447
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=76.69 E-value=1.8 Score=42.27 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+-++++|||+||||-.++-.
T Consensus 4 ~~i~I~GPTAsGKT~lai~L 23 (308)
T COG0324 4 KLIVIAGPTASGKTALAIAL 23 (308)
T ss_pred cEEEEECCCCcCHHHHHHHH
Confidence 34789999999999887653
No 448
>PTZ00301 uridine kinase; Provisional
Probab=76.69 E-value=4.2 Score=37.29 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=15.1
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-|.++|++|||||..+..
T Consensus 5 iIgIaG~SgSGKTTla~~ 22 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTN 22 (210)
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 367899999999998854
No 449
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=76.65 E-value=1.9 Score=43.70 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
..++++.||||+|||.++-..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~l 128 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTL 128 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 468999999999999988653
No 450
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=76.55 E-value=1.9 Score=43.77 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
..++++.||||+|||.++...
T Consensus 116 ~~~iLL~GP~GsGKT~lAraL 136 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTL 136 (413)
T ss_pred CceEEEECCCCcCHHHHHHHH
Confidence 568999999999999998653
No 451
>PRK05595 replicative DNA helicase; Provisional
Probab=76.15 E-value=4 Score=41.47 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=30.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEccc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPI 246 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~ral~l~Pt 246 (333)
..|.-+++.|.||.|||..++-.+.. +...|.+++|++.-
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 45677889999999999988765553 45668888888653
No 452
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=76.08 E-value=1.9 Score=41.54 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~i 230 (333)
++++||||||||.++....
T Consensus 2 i~i~G~t~~GKs~la~~l~ 20 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLA 20 (287)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999887644
No 453
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=75.95 E-value=4.6 Score=38.80 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.+..+.+.|++|+|||.............|.++.++
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i 68 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI 68 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467889999999999987655443333345555443
No 454
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=75.91 E-value=6.2 Score=37.56 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=21.3
Q ss_pred cEEE-EcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Q psy2760 211 HVFV-TAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247 (333)
Q Consensus 211 ~vlv-~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr 247 (333)
++++ +||+|+|||..+..... .. +...+++.+..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~-~~--~~~~~~i~~~~ 78 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCN-EV--GAEVLFVNGSD 78 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHH-Hh--CccceEeccCc
Confidence 4444 89999999987654332 22 34456666553
No 455
>PHA02542 41 41 helicase; Provisional
Probab=75.91 E-value=4 Score=42.08 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.|.-+++.|++|.|||..++--+......|.+++|++
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3567889999999999998876655556677888875
No 456
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=75.86 E-value=6.3 Score=40.12 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~ 255 (333)
..++++||+|+|||..+....-... ..+.+++|+.. ..+.++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~ 177 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVD 177 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHH
Confidence 4689999999999987653322222 23567888764 344444443
No 457
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=75.79 E-value=5.4 Score=42.80 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=24.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEE
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 242 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~ 242 (333)
..+.+|++.|++|+|||.++...-....+.+...++
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~ 432 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVK 432 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEE
Confidence 566799999999999998776543333333444443
No 458
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.73 E-value=2 Score=47.81 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il 231 (333)
++|+|+||+|||++....+-
T Consensus 784 LYIyG~PGTGKTATVK~VLr 803 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQ 803 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35999999999999877553
No 459
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=75.70 E-value=5.5 Score=39.41 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHh------cCCCeEEEEcccH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTRTIYTSPIK 247 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l------~~g~ral~l~Ptr 247 (333)
.|.-..++|+.|||||..+...++... ..+.+++|+--..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 356778999999999998876554332 1236899986543
No 460
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=75.61 E-value=8.6 Score=40.36 Aligned_cols=91 Identities=18% Similarity=0.079 Sum_probs=49.7
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHH-H------hcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIAL-S------QNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDV 277 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~-~------l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a 277 (333)
...+.+|++.|++|+||+.++-..-.. . .....+..+.+..-++.....+. ..|+. -|-+||..+.....
T Consensus 239 A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lles--eLFG~~~gaftga~~~~~~G 316 (538)
T PRK15424 239 ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA--ELFGYEEGAFTGSRRGGRAG 316 (538)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHH--HhcCCccccccCccccccCC
Confidence 356789999999999999988654332 0 11223345555555554443332 35764 45566653211100
Q ss_pred ceEEeccCcceEecccccccccc
Q psy2760 278 EKLLEDLNIGGLDELSIHDFNKH 300 (333)
Q Consensus 278 ~ili~t~~i~liViDe~H~~~~~ 300 (333)
++...+-+.+.+||++.+...
T Consensus 317 --l~e~A~gGTLfLdeI~~Lp~~ 337 (538)
T PRK15424 317 --LFEIAHGGTLFLDEIGEMPLP 337 (538)
T ss_pred --chhccCCCEEEEcChHhCCHH
Confidence 122234455667777766543
No 461
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=75.46 E-value=14 Score=37.34 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=44.8
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEecc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDL 284 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~ 284 (333)
...+.++++.|.+|+|||.++-..-.. ........+.+...++..+.... ..|+. -|.++|....... .+...
T Consensus 158 ~~~~~~vli~Ge~GtGK~~lA~~ih~~-s~~~~~~~i~i~c~~~~~~~~~~--~lfg~~~g~~~~~~~~~~g---~~~~a 231 (469)
T PRK10923 158 SRSSISVLINGESGTGKELVAHALHRH-SPRAKAPFIALNMAAIPKDLIES--ELFGHEKGAFTGANTIRQG---RFEQA 231 (469)
T ss_pred hccCCeEEEEeCCCCcHHHHHHHHHhc-CCCCCCCeEeeeCCCCCHHHHHH--HhcCCCCCCCCCCCcCCCC---CeeEC
Confidence 356789999999999999875543222 22223344444444443333322 23554 4555554332211 12222
Q ss_pred CcceEecccccccc
Q psy2760 285 NIGGLDELSIHDFN 298 (333)
Q Consensus 285 ~i~liViDe~H~~~ 298 (333)
+-+.+.+|+++...
T Consensus 232 ~~Gtl~l~~i~~l~ 245 (469)
T PRK10923 232 DGGTLFLDEIGDMP 245 (469)
T ss_pred CCCEEEEeccccCC
Confidence 33445667776543
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=75.36 E-value=2.8 Score=34.50 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCcHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~ 227 (333)
.|..+.+.|++|||||...-
T Consensus 10 ~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEEccCCCcccccee
Confidence 57899999999999998764
No 463
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=75.28 E-value=3.5 Score=38.50 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.6
Q ss_pred HcCCcEEEEcCCCCcHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIA 226 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~ 226 (333)
..|..+.+.||+|||||..-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56999999999999999753
No 464
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=75.23 E-value=6 Score=34.87 Aligned_cols=87 Identities=23% Similarity=0.215 Sum_probs=45.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
....+|++.|++|+||++++-..-. .........+.+...++..+..+ .+.|+. -+.++|...... -++...+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~-~s~r~~~pfi~vnc~~~~~~~~e--~~LFG~~~~~~~~~~~~~~---G~l~~A~ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN-NSPRKNGPFISVNCAALPEELLE--SELFGHEKGAFTGARSDKK---GLLEQAN 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH-CSTTTTS-EEEEETTTS-HHHHH--HHHHEBCSSSSTTTSSEBE---HHHHHTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH-hhhcccCCeEEEehhhhhcchhh--hhhhccccccccccccccC---Cceeecc
Confidence 5668999999999999998765332 22223345555666666555443 234653 222333322111 1122335
Q ss_pred cceEeccccccccc
Q psy2760 286 IGGLDELSIHDFNK 299 (333)
Q Consensus 286 i~liViDe~H~~~~ 299 (333)
-+.+.+|+++....
T Consensus 94 ~GtL~Ld~I~~L~~ 107 (168)
T PF00158_consen 94 GGTLFLDEIEDLPP 107 (168)
T ss_dssp TSEEEEETGGGS-H
T ss_pred ceEEeecchhhhHH
Confidence 56677777776653
No 465
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=75.18 E-value=9.3 Score=39.96 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=49.3
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEecc
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDL 284 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~ 284 (333)
...+.+|++.|.+|+||+.++...-....+ ..+..+.+...++.....+. +.|+. -|-+||........ ++...
T Consensus 232 A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-~~~pfv~inC~~l~e~lles--eLFG~~~gaftga~~~~~~G--l~e~A 306 (526)
T TIGR02329 232 ARSDATVLILGESGTGKELVAQAIHQLSGR-RDFPFVAINCGAIAESLLEA--ELFGYEEGAFTGARRGGRTG--LIEAA 306 (526)
T ss_pred hCCCCcEEEECCCCcCHHHHHHHHHHhcCc-CCCCEEEeccccCChhHHHH--HhcCCccccccccccccccc--chhhc
Confidence 356789999999999999987654322222 23344555554554433322 35664 45666653211100 11222
Q ss_pred CcceEecccccccccc
Q psy2760 285 NIGGLDELSIHDFNKH 300 (333)
Q Consensus 285 ~i~liViDe~H~~~~~ 300 (333)
+-+.+.+||++.+...
T Consensus 307 ~gGTLfLdeI~~Lp~~ 322 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP 322 (526)
T ss_pred CCceEEecChHhCCHH
Confidence 3455667777766543
No 466
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=74.98 E-value=2.2 Score=43.22 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
-.|...++.||.|+|||..+..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~ 188 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQN 188 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHH
Confidence 5688999999999999976544
No 467
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=74.95 E-value=4.7 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
++++|..|+|||.++........+.|.+++++
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~ 33 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLV 33 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 57899999999999776555555677777776
No 468
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=74.83 E-value=5.4 Score=34.56 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.+++...|+|||.++..........|.+++++
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLI 33 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEcCCCCccHHHHHHHHHhcccccccccccc
Confidence 46788899999999876544444478888876
No 469
>PRK05480 uridine/cytidine kinase; Provisional
Probab=74.56 E-value=4.9 Score=35.97 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
+.-+.++|++|||||..+..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~ 25 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVAST 25 (209)
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45688999999999988744
No 470
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=74.45 E-value=3.7 Score=45.16 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSP 245 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~P 245 (333)
.+.+|+|+||||||......+.+..+ .+.+++++=+
T Consensus 457 g~~~i~G~tGsGKS~l~~~l~~~~~~~~~~~v~~~D~ 493 (818)
T PRK13830 457 GHTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAFDK 493 (818)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCEEEEECC
Confidence 47999999999999887654443333 3455555544
No 471
>PRK06217 hypothetical protein; Validated
Probab=74.19 E-value=2.3 Score=37.47 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.+++.|++|||||.++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L 21 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAAL 21 (183)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999887653
No 472
>PRK08233 hypothetical protein; Provisional
Probab=74.08 E-value=3 Score=35.92 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
.-+.+.|++|||||..+..
T Consensus 4 ~iI~I~G~~GsGKtTla~~ 22 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTER 22 (182)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4577899999999987754
No 473
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.08 E-value=8.4 Score=42.11 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCCcHHHHHHH-HHHHHhcCC-CeEEEEc--ccHHHHHHHHHHHHHhcC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY-AIALSQNHK-TRTIYTS--PIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l-~il~~l~~g-~ral~l~--PtraLa~Q~~~~l~~~f~ 262 (333)
++-+++.||||+|||..... +.......| .++.++. +.|.=+.++.+.+.+.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g 242 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG 242 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC
Confidence 56788999999999877654 433334444 3555543 235445555566655443
No 474
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=74.06 E-value=2.4 Score=35.02 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.3
Q ss_pred EEEEcCCCCcHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~ 229 (333)
+++++++|||||.++...
T Consensus 2 I~i~G~~GsGKst~a~~l 19 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLL 19 (147)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999987653
No 475
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=73.96 E-value=3.7 Score=38.37 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.3
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il 231 (333)
+++.||||+|||..+....-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~ 23 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQ 23 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHH
Confidence 58899999999988766443
No 476
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=73.91 E-value=5.7 Score=35.78 Aligned_cols=39 Identities=10% Similarity=-0.068 Sum_probs=33.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
--+.|....|-|||.+++--.+++...|.|++++-=.+.
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg 60 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG 60 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 457788889999999999999999999999999854443
No 477
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=73.87 E-value=4.7 Score=39.68 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHH-----HcC-CcEEEEcCCCCcHHHHHHH
Q psy2760 199 QKQAIIKL-----EEH-NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 199 Q~~ai~~l-----~~g-~~vlv~apTGSGKTl~~~l 228 (333)
|..+...+ ..| .++++.|+.|+|||..+-.
T Consensus 13 q~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~ 48 (334)
T PRK13407 13 QEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRA 48 (334)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHH
Confidence 66655542 255 6999999999999987643
No 478
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=73.85 E-value=2.5 Score=35.38 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=16.8
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
+++++|+.|||||.++....
T Consensus 1 ~i~l~G~~GsGKstla~~la 20 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLA 20 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999986543
No 479
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=73.82 E-value=7.3 Score=28.84 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.5
Q ss_pred EEEEcCCCCcHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l 228 (333)
+.++|+.|||||..+..
T Consensus 2 i~i~G~~gsGKst~~~~ 18 (69)
T cd02019 2 IAITGGSGSGKSTVAKK 18 (69)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999988764
No 480
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.72 E-value=12 Score=35.79 Aligned_cols=47 Identities=15% Similarity=0.071 Sum_probs=30.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccH-HHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIK-ALSNQKY 254 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--Ptr-aLa~Q~~ 254 (333)
.+..+++++++|+|||..+..........+.++.++. +.| +.+.|+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~ 123 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ 123 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 3578999999999999987764443334455665554 333 4454543
No 481
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=73.68 E-value=3.1 Score=36.30 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.9
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
++++.|++|||||.++...
T Consensus 1 ~I~i~G~pGsGKst~a~~L 19 (194)
T cd01428 1 RILLLGPPGSGKGTQAERL 19 (194)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999887553
No 482
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=73.66 E-value=5.7 Score=35.26 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
++..+.|++|||.+.+..+....+++.++-|+=|
T Consensus 4 ~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KP 37 (199)
T PF13500_consen 4 FITGTDTGVGKTVVSLGLARALRRRGIKVGYFKP 37 (199)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEee
Confidence 3456779999999988776655566777766644
No 483
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=73.59 E-value=5.9 Score=38.39 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ 234 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l 234 (333)
...+++.|+.|||||.+-..++..+.
T Consensus 23 ~~r~vL~G~~GsGKS~~L~q~~~~A~ 48 (309)
T PF10236_consen 23 NNRYVLTGERGSGKSVLLAQAVHYAR 48 (309)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999888777554
No 484
>PRK14737 gmk guanylate kinase; Provisional
Probab=73.41 E-value=3.3 Score=37.07 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
.++-++++||+|||||.+.-..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999998876553
No 485
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=73.35 E-value=9.2 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=25.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHH------------hcCCCeEEEEc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALS------------QNHKTRTIYTS 244 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~------------l~~g~ral~l~ 244 (333)
-.++.||.|+|||..++..++.. ...+.+++|+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 45889999999999987754421 12456899987
No 486
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=73.35 E-value=12 Score=38.46 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.9
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+..+.|++..||+|+|||.+|..
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHH
Confidence 47889999999999999977654
No 487
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=73.33 E-value=3.9 Score=42.39 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHH-------HcCCcEEEEcCCCCcHHHHHH
Q psy2760 195 LDVFQKQAIIKL-------EEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 195 l~~~Q~~ai~~l-------~~g~~vlv~apTGSGKTl~~~ 227 (333)
-+++|......+ ..|.-+.++||.|||||...-
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 477888776554 578999999999999998876
No 488
>PRK06762 hypothetical protein; Provisional
Probab=73.23 E-value=2.6 Score=36.18 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.-++++|+.|||||.++...
T Consensus 3 ~li~i~G~~GsGKST~A~~L 22 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQL 22 (166)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999988653
No 489
>PRK08356 hypothetical protein; Provisional
Probab=73.14 E-value=2.9 Score=37.31 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
..++++||.|||||.++...
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45788999999999998765
No 490
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=72.95 E-value=2.6 Score=42.27 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=19.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH 236 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~ 236 (333)
..|+-+|+.+|+|+|||..++ +|.+.+.+
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~-~ia~eLG~ 76 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAM-AIAKELGE 76 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHH-HHHHHCTT
T ss_pred ccCcEEEEeCCCCCCchHHHH-HHHHHhCC
Confidence 368899999999999998765 34444433
No 491
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=72.87 E-value=3.7 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+++++.||||+|||..+...
T Consensus 47 p~~ILLiGppG~GKT~lAraL 67 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRL 67 (441)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 379999999999999988653
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=72.86 E-value=2.3 Score=38.21 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
|.-+.++||+|||||..+-.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~ 25 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARK 25 (207)
T ss_pred eEEEEEECCCCCCHHHHHHH
Confidence 56788999999999987644
No 493
>PRK13973 thymidylate kinase; Provisional
Probab=72.79 E-value=10 Score=34.39 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.|+-+++.|+-|||||..+....-.....|.+++++
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367899999999999999876554444556666665
No 494
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=72.74 E-value=5.1 Score=38.84 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
.+++++||+|+|||.+....+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999998875544
No 495
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=72.57 E-value=5 Score=42.18 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHH-HHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKY-RDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~--g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraLa~Q~~-~~l~~~f~ 262 (333)
..+|+|.+.+..+.. =+.|+++.++-+|||.+.+..+.... .....++|+.||..+|.... .+|.-.+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 679999999988733 36899999999999997766665444 33467899999999999888 44544443
No 496
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=72.48 E-value=2.8 Score=35.29 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.4
Q ss_pred EEEEcCCCCcHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~ 229 (333)
++++|+.|||||..+-..
T Consensus 2 i~l~G~~GsGKST~a~~l 19 (150)
T cd02021 2 IVVMGVSGSGKSTVGKAL 19 (150)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 578999999999988653
No 497
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=72.43 E-value=15 Score=36.73 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=46.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
..+.++++.+++|+||+.++-..-..... ....++.+...++..+..+. ..|+. -|.++|....... .+...+
T Consensus 160 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-~~~~~v~v~c~~~~~~~~~~--~lfg~~~~~~~~~~~~~~g---~~~~a~ 233 (445)
T TIGR02915 160 PSDITVLLLGESGTGKEVLARALHQLSDR-KDKRFVAINCAAIPENLLES--ELFGYEKGAFTGAVKQTLG---KIEYAH 233 (445)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhCCc-CCCCeEEEECCCCChHHHHH--HhcCCCCCCcCCCccCCCC---ceeECC
Confidence 45778999999999999876543322222 22334555554544433332 24654 3445554332111 122233
Q ss_pred cceEeccccccccc
Q psy2760 286 IGGLDELSIHDFNK 299 (333)
Q Consensus 286 i~liViDe~H~~~~ 299 (333)
-+.+++|+++.+..
T Consensus 234 ~gtl~l~~i~~l~~ 247 (445)
T TIGR02915 234 GGTLFLDEIGDLPL 247 (445)
T ss_pred CCEEEEechhhCCH
Confidence 45567777776653
No 498
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=72.35 E-value=6.5 Score=35.91 Aligned_cols=35 Identities=20% Similarity=0.039 Sum_probs=30.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
-+.|....|-|||.+++-.+++++..|.|+.++-=
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 46788889999999999999999999999998743
No 499
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=72.31 E-value=6.5 Score=35.15 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=28.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
-+.|....|-|||.+++-.++++...|.|++++-=.+.
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg 42 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKG 42 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence 46778889999999999999999999999999865544
No 500
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=72.27 E-value=4.3 Score=39.32 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..|+++++.+|+|.|||..+....
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA 64 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALA 64 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHH
Confidence 5899999999999999999887644
Done!