Query psy2760
Match_columns 333
No_of_seqs 302 out of 2291
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 00:30:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9o_A ATP-dependent RNA helic 99.8 1.9E-20 6.6E-25 205.0 12.3 135 188-322 178-330 (1108)
2 4a4z_A Antiviral helicase SKI2 99.8 5.4E-20 1.8E-24 199.7 12.3 162 163-324 8-189 (997)
3 3iuy_A Probable ATP-dependent 99.8 2.5E-19 8.6E-24 160.8 14.1 157 163-326 17-211 (228)
4 2xgj_A ATP-dependent RNA helic 99.8 8.9E-20 3E-24 198.2 12.4 136 188-323 80-233 (1010)
5 3fmo_B ATP-dependent RNA helic 99.8 1.4E-18 4.6E-23 164.4 14.8 154 171-330 97-284 (300)
6 3dkp_A Probable ATP-dependent 99.8 5E-19 1.7E-23 160.5 11.1 160 163-328 26-225 (245)
7 3ly5_A ATP-dependent RNA helic 99.8 3.2E-19 1.1E-23 165.0 9.6 157 163-328 53-247 (262)
8 1vec_A ATP-dependent RNA helic 99.8 1.7E-18 5.8E-23 152.4 12.4 151 172-329 9-193 (206)
9 1wrb_A DJVLGB; RNA helicase, D 99.8 2.7E-18 9.3E-23 156.6 13.8 150 172-328 29-224 (253)
10 3fe2_A Probable ATP-dependent 99.8 5.2E-19 1.8E-23 160.8 8.6 149 172-327 35-221 (242)
11 2pl3_A Probable ATP-dependent 99.8 2.4E-18 8.3E-23 155.1 12.4 149 172-327 31-216 (236)
12 1qde_A EIF4A, translation init 99.8 2.6E-18 8.8E-23 153.3 12.3 150 172-328 20-201 (224)
13 2oxc_A Probable ATP-dependent 99.8 3.5E-18 1.2E-22 154.1 13.2 150 172-328 30-213 (230)
14 2gxq_A Heat resistant RNA depe 99.8 3.2E-18 1.1E-22 150.5 11.6 149 172-327 7-189 (207)
15 4f92_B U5 small nuclear ribonu 99.8 2.8E-18 9.7E-23 194.6 14.2 116 194-310 79-231 (1724)
16 1q0u_A Bstdead; DEAD protein, 99.8 2.6E-18 9E-23 153.4 10.8 150 172-328 10-196 (219)
17 3bor_A Human initiation factor 99.8 2.5E-18 8.4E-23 156.0 10.5 150 172-328 36-219 (237)
18 1t6n_A Probable ATP-dependent 99.7 8.7E-18 3E-22 149.7 11.3 150 172-327 20-204 (220)
19 3ber_A Probable ATP-dependent 99.7 1.4E-17 4.8E-22 152.9 11.0 150 172-328 49-232 (249)
20 2db3_A ATP-dependent RNA helic 99.7 1.8E-17 6.2E-22 163.5 12.1 154 166-327 57-250 (434)
21 2p6r_A Afuhel308 helicase; pro 99.7 6.2E-18 2.1E-22 176.3 8.2 145 173-324 10-183 (702)
22 3fmp_B ATP-dependent RNA helic 99.7 4.1E-17 1.4E-21 161.8 13.7 154 171-330 97-284 (479)
23 2va8_A SSO2462, SKI2-type heli 99.7 2E-17 6.8E-22 172.6 11.8 145 172-323 14-185 (715)
24 3i5x_A ATP-dependent RNA helic 99.7 1.9E-17 6.6E-22 167.2 11.1 160 161-327 67-278 (563)
25 2zj8_A DNA helicase, putative 99.7 1.1E-17 3.8E-22 174.8 9.4 146 172-323 7-179 (720)
26 4f92_B U5 small nuclear ribonu 99.7 1.1E-17 3.9E-22 189.7 9.6 114 194-308 926-1068(1724)
27 3fht_A ATP-dependent RNA helic 99.7 8.8E-17 3E-21 154.2 14.0 152 171-328 30-215 (412)
28 2i4i_A ATP-dependent RNA helic 99.7 3.1E-17 1E-21 158.2 10.9 124 172-301 21-191 (417)
29 3oiy_A Reverse gyrase helicase 99.7 1.9E-17 6.4E-22 161.0 8.7 111 191-301 18-155 (414)
30 2eyq_A TRCF, transcription-rep 99.7 2.9E-18 9.9E-23 188.5 3.0 219 73-325 507-763 (1151)
31 3pey_A ATP-dependent RNA helic 99.7 1.2E-16 4E-21 152.0 13.0 151 171-327 10-191 (395)
32 3sqw_A ATP-dependent RNA helic 99.7 8.9E-17 3.1E-21 163.9 12.4 135 161-301 16-191 (579)
33 3eiq_A Eukaryotic initiation f 99.7 7.8E-17 2.7E-21 154.9 10.3 151 172-328 46-229 (414)
34 3tbk_A RIG-I helicase domain; 99.7 1.4E-16 4.7E-21 158.4 12.2 110 192-301 2-143 (555)
35 2j0s_A ATP-dependent RNA helic 99.7 1.4E-16 4.6E-21 153.8 11.8 151 171-328 42-225 (410)
36 1hv8_A Putative ATP-dependent 99.7 1.4E-16 4.9E-21 149.8 10.6 150 172-328 12-193 (367)
37 1xti_A Probable ATP-dependent 99.7 1.2E-16 4.3E-21 152.4 9.7 122 172-299 14-166 (391)
38 1s2m_A Putative ATP-dependent 99.7 4.5E-16 1.6E-20 149.4 13.4 124 172-301 27-179 (400)
39 2z0m_A 337AA long hypothetical 99.7 4.7E-16 1.6E-20 144.9 12.7 120 173-301 1-145 (337)
40 1fuu_A Yeast initiation factor 99.7 1.7E-16 5.8E-21 151.3 9.7 147 172-325 27-205 (394)
41 1gm5_A RECG; helicase, replica 99.7 1.5E-16 5.2E-21 168.7 10.2 136 190-327 364-530 (780)
42 4a2p_A RIG-I, retinoic acid in 99.7 2.5E-16 8.7E-21 157.0 11.3 110 192-301 5-146 (556)
43 1rif_A DAR protein, DNA helica 99.6 1.4E-15 4.9E-20 141.2 10.2 130 193-324 112-263 (282)
44 2oca_A DAR protein, ATP-depend 99.6 9.6E-16 3.3E-20 153.0 8.8 132 192-325 111-264 (510)
45 4ddu_A Reverse gyrase; topoiso 99.6 2.5E-15 8.5E-20 164.7 12.6 113 189-302 73-213 (1104)
46 2ykg_A Probable ATP-dependent 99.6 3.1E-15 1.1E-19 154.5 12.4 110 191-300 9-151 (696)
47 2v1x_A ATP-dependent DNA helic 99.6 6.4E-15 2.2E-19 151.8 14.0 156 164-328 18-215 (591)
48 3b6e_A Interferon-induced heli 99.6 3.6E-15 1.2E-19 131.0 10.5 108 192-299 31-176 (216)
49 3fho_A ATP-dependent RNA helic 99.6 8.6E-16 2.9E-20 154.7 6.7 147 172-324 125-302 (508)
50 4a2q_A RIG-I, retinoic acid in 99.6 4E-15 1.4E-19 157.4 11.9 108 194-301 248-387 (797)
51 2fwr_A DNA repair protein RAD2 99.6 4.2E-15 1.4E-19 146.9 11.3 126 191-324 90-229 (472)
52 4gl2_A Interferon-induced heli 99.5 4.7E-15 1.6E-19 153.3 8.1 108 192-299 5-150 (699)
53 2fz4_A DNA repair protein RAD2 99.5 1.7E-14 5.9E-19 131.8 10.8 104 191-300 90-207 (237)
54 1oyw_A RECQ helicase, ATP-depe 99.5 1.7E-14 5.7E-19 146.3 10.8 134 191-327 21-188 (523)
55 1wp9_A ATP-dependent RNA helic 99.5 1.8E-14 6E-19 139.0 9.6 107 193-300 8-140 (494)
56 4a2w_A RIG-I, retinoic acid in 99.5 2E-14 6.8E-19 155.1 10.3 109 193-301 247-387 (936)
57 1gku_B Reverse gyrase, TOP-RG; 99.4 1.2E-13 4E-18 150.9 9.4 108 190-299 53-189 (1054)
58 3h1t_A Type I site-specific re 99.4 7.3E-13 2.5E-17 135.0 9.0 131 192-324 176-342 (590)
59 3llm_A ATP-dependent RNA helic 99.3 3.8E-12 1.3E-16 115.3 10.6 136 192-328 59-223 (235)
60 3rc3_A ATP-dependent RNA helic 99.3 2.6E-12 9E-17 134.4 8.7 101 207-311 153-265 (677)
61 2v6i_A RNA helicase; membrane, 99.3 1.6E-12 5.3E-17 128.6 3.6 118 208-327 1-138 (431)
62 3o8b_A HCV NS3 protease/helica 99.3 1.4E-12 4.7E-17 136.1 3.0 102 196-300 219-333 (666)
63 1tf5_A Preprotein translocase 99.2 1.9E-11 6.6E-16 129.7 8.5 106 191-298 80-216 (844)
64 3crv_A XPD/RAD3 related DNA he 99.2 3.1E-11 1E-15 122.9 9.7 65 193-260 2-70 (551)
65 2wv9_A Flavivirin protease NS2 99.2 7E-13 2.4E-17 138.6 -2.6 133 194-328 215-378 (673)
66 2z83_A Helicase/nucleoside tri 99.2 5.2E-12 1.8E-16 125.8 3.7 121 206-328 18-158 (459)
67 2jlq_A Serine protease subunit 99.2 5.1E-12 1.8E-16 125.5 3.3 130 194-327 4-155 (451)
68 2fsf_A Preprotein translocase 99.2 1.9E-11 6.4E-16 129.7 7.3 105 192-298 72-207 (853)
69 1yks_A Genome polyprotein [con 99.2 1.5E-11 5E-16 122.1 5.0 119 206-326 5-143 (440)
70 1z63_A Helicase of the SNF2/RA 99.2 1E-10 3.5E-15 116.2 10.8 108 193-301 36-165 (500)
71 3dmq_A RNA polymerase-associat 99.1 9.6E-11 3.3E-15 126.9 11.1 133 191-324 150-317 (968)
72 2whx_A Serine protease/ntpase/ 99.1 1.6E-11 5.6E-16 127.1 3.6 130 194-326 171-321 (618)
73 2vl7_A XPD; helicase, unknown 99.1 2.3E-10 7.9E-15 116.3 11.6 65 192-259 5-73 (540)
74 2ipc_A Preprotein translocase 99.1 8.7E-11 3E-15 125.1 7.6 106 191-298 76-215 (997)
75 1nkt_A Preprotein translocase 99.1 9.6E-11 3.3E-15 124.7 7.7 106 191-298 108-244 (922)
76 2xau_A PRE-mRNA-splicing facto 98.9 1.5E-09 5.1E-14 115.0 8.0 116 172-296 78-219 (773)
77 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 6.1E-09 2.1E-13 113.5 9.3 103 193-298 270-414 (1038)
78 3mwy_W Chromo domain-containin 98.8 1E-08 3.5E-13 108.7 10.4 107 193-300 235-382 (800)
79 4a15_A XPD helicase, ATP-depen 98.8 7E-09 2.4E-13 107.4 8.7 68 193-260 2-74 (620)
80 1z3i_X Similar to RAD54-like; 98.7 3.1E-08 1.1E-12 102.6 8.7 106 194-300 55-207 (644)
81 1w36_D RECD, exodeoxyribonucle 98.1 6.2E-06 2.1E-10 85.0 8.9 64 196-259 151-218 (608)
82 3e1s_A Exodeoxyribonuclease V, 97.8 1.6E-05 5.5E-10 81.5 4.8 104 192-300 187-294 (574)
83 3jux_A Protein translocase sub 97.7 5.7E-05 1.9E-09 79.5 7.0 77 191-269 72-152 (822)
84 4b3f_X DNA-binding protein smu 97.6 0.00013 4.3E-09 75.5 9.3 67 194-260 189-256 (646)
85 2gk6_A Regulator of nonsense t 97.5 0.00028 9.4E-09 72.8 9.5 66 194-259 180-246 (624)
86 2xzl_A ATP-dependent helicase 97.3 0.00043 1.5E-08 73.6 8.9 67 194-260 360-427 (802)
87 3lfu_A DNA helicase II; SF1 he 97.3 0.00038 1.3E-08 71.0 7.9 67 194-262 9-79 (647)
88 3upu_A ATP-dependent DNA helic 97.2 0.00079 2.7E-08 66.6 8.7 64 194-257 25-94 (459)
89 2wjy_A Regulator of nonsense t 97.2 0.00082 2.8E-08 71.5 9.3 66 194-259 356-422 (800)
90 1c4o_A DNA nucleotide excision 97.1 0.00077 2.6E-08 70.1 8.2 69 192-263 6-79 (664)
91 3cpe_A Terminase, DNA packagin 96.9 0.0062 2.1E-07 62.3 12.5 73 190-262 159-233 (592)
92 1uaa_A REP helicase, protein ( 96.7 0.0025 8.5E-08 65.8 7.4 67 194-262 2-72 (673)
93 3u4q_A ATP-dependent helicase/ 96.7 0.0027 9.3E-08 70.3 7.9 68 193-262 9-82 (1232)
94 1pjr_A PCRA; DNA repair, DNA r 96.6 0.0036 1.2E-07 65.5 8.1 67 194-262 11-81 (724)
95 2d7d_A Uvrabc system protein B 96.5 0.0066 2.3E-07 63.0 9.1 69 192-263 10-83 (661)
96 2o0j_A Terminase, DNA packagin 96.0 0.02 6.8E-07 55.9 9.1 70 191-260 160-231 (385)
97 3ec2_A DNA replication protein 95.4 0.027 9.1E-07 47.6 6.3 61 196-257 16-86 (180)
98 2bjv_A PSP operon transcriptio 94.8 0.056 1.9E-06 48.6 7.1 87 207-299 27-114 (265)
99 2p65_A Hypothetical protein PF 94.5 0.18 6.3E-06 41.4 9.0 22 209-230 43-64 (187)
100 2dr3_A UPF0273 protein PH0284; 94.0 0.075 2.6E-06 46.5 5.8 50 208-258 22-71 (247)
101 2w58_A DNAI, primosome compone 93.4 0.14 4.7E-06 43.8 6.4 35 210-244 55-89 (202)
102 2b8t_A Thymidine kinase; deoxy 92.9 0.092 3.2E-06 47.2 4.6 41 207-247 10-50 (223)
103 2orw_A Thymidine kinase; TMTK, 92.8 0.13 4.3E-06 44.5 5.2 40 208-247 2-41 (184)
104 1ojl_A Transcriptional regulat 92.7 0.085 2.9E-06 49.1 4.3 87 207-299 23-110 (304)
105 3bos_A Putative DNA replicatio 92.5 0.14 4.9E-06 44.1 5.2 37 208-244 51-87 (242)
106 2qgz_A Helicase loader, putati 92.1 0.15 5.2E-06 47.6 5.2 36 209-244 152-188 (308)
107 1xx6_A Thymidine kinase; NESG, 92.1 0.14 4.8E-06 44.8 4.6 39 209-247 8-46 (191)
108 1e9r_A Conjugal transfer prote 92.0 0.15 5.2E-06 49.3 5.2 43 209-251 53-95 (437)
109 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.17 5.9E-06 43.5 4.6 37 208-244 22-58 (235)
110 2kjq_A DNAA-related protein; s 91.2 0.19 6.5E-06 41.8 4.3 37 208-244 35-71 (149)
111 3n70_A Transport activator; si 91.0 0.22 7.6E-06 40.7 4.5 23 207-229 22-44 (145)
112 3co5_A Putative two-component 91.0 0.18 6.2E-06 41.2 4.0 22 206-227 24-45 (143)
113 3bh0_A DNAB-like replicative h 90.9 0.42 1.4E-05 44.6 6.9 40 207-246 66-105 (315)
114 2zts_A Putative uncharacterize 90.8 0.16 5.6E-06 44.3 3.7 50 209-259 30-80 (251)
115 1jbk_A CLPB protein; beta barr 90.4 0.37 1.3E-05 39.5 5.3 22 209-230 43-64 (195)
116 2z43_A DNA repair and recombin 90.2 0.34 1.2E-05 45.3 5.5 41 208-248 106-152 (324)
117 4ag6_A VIRB4 ATPase, type IV s 90.2 0.27 9.2E-06 47.0 4.9 41 208-248 34-74 (392)
118 1a5t_A Delta prime, HOLB; zinc 90.1 0.5 1.7E-05 44.2 6.6 37 195-231 3-46 (334)
119 3vkw_A Replicase large subunit 89.8 0.18 6.2E-06 50.0 3.5 44 211-259 163-206 (446)
120 2cvh_A DNA repair and recombin 89.7 0.32 1.1E-05 41.6 4.6 35 208-245 19-53 (220)
121 3hr8_A Protein RECA; alpha and 89.6 0.27 9.2E-06 47.3 4.4 42 209-250 61-102 (356)
122 3dm5_A SRP54, signal recogniti 89.6 0.52 1.8E-05 46.7 6.5 52 209-260 100-153 (443)
123 2px0_A Flagellar biosynthesis 89.6 0.52 1.8E-05 43.8 6.2 51 209-259 105-158 (296)
124 1p9r_A General secretion pathw 89.4 0.53 1.8E-05 46.1 6.4 34 195-228 151-186 (418)
125 1u94_A RECA protein, recombina 89.3 0.29 1E-05 46.9 4.4 40 209-248 63-102 (356)
126 2zr9_A Protein RECA, recombina 89.3 0.37 1.3E-05 45.9 5.1 38 209-246 61-98 (349)
127 1l8q_A Chromosomal replication 89.2 0.4 1.4E-05 44.2 5.2 48 209-257 37-84 (324)
128 2oap_1 GSPE-2, type II secreti 89.1 0.54 1.8E-05 47.3 6.4 33 195-227 245-278 (511)
129 2ehv_A Hypothetical protein PH 89.1 0.37 1.3E-05 42.0 4.6 38 207-244 28-66 (251)
130 3e2i_A Thymidine kinase; Zn-bi 88.8 0.73 2.5E-05 41.5 6.3 42 207-248 26-67 (219)
131 3kl4_A SRP54, signal recogniti 88.7 0.59 2E-05 46.1 6.2 51 209-259 97-149 (433)
132 1n0w_A DNA repair protein RAD5 88.7 0.57 2E-05 40.7 5.5 38 208-245 23-66 (243)
133 1v5w_A DMC1, meiotic recombina 88.4 0.49 1.7E-05 44.7 5.2 41 208-248 121-167 (343)
134 1g5t_A COB(I)alamin adenosyltr 88.2 0.58 2E-05 41.4 5.2 36 209-244 28-63 (196)
135 1xp8_A RECA protein, recombina 87.6 0.54 1.8E-05 45.2 5.0 39 209-247 74-112 (366)
136 1nlf_A Regulatory protein REPA 87.5 0.99 3.4E-05 40.8 6.5 39 208-246 29-77 (279)
137 1sxj_A Activator 1 95 kDa subu 87.4 0.97 3.3E-05 45.0 6.9 33 210-245 78-110 (516)
138 3io5_A Recombination and repai 87.3 0.34 1.2E-05 46.3 3.3 42 209-251 29-72 (333)
139 1w4r_A Thymidine kinase; type 87.1 0.56 1.9E-05 41.4 4.4 82 208-297 19-103 (195)
140 1vma_A Cell division protein F 86.8 1.1 3.8E-05 41.9 6.5 51 209-259 104-156 (306)
141 3bgw_A DNAB-like replicative h 86.8 0.68 2.3E-05 45.6 5.3 40 207-246 195-234 (444)
142 3syl_A Protein CBBX; photosynt 86.6 0.77 2.6E-05 41.6 5.3 21 209-229 67-87 (309)
143 2j9r_A Thymidine kinase; TK1, 86.6 0.69 2.4E-05 41.4 4.8 40 209-248 28-67 (214)
144 2eyu_A Twitching motility prot 86.5 0.57 1.9E-05 42.7 4.3 22 207-228 23-44 (261)
145 2qby_B CDC6 homolog 3, cell di 86.5 1.1 3.9E-05 41.6 6.5 36 209-244 45-88 (384)
146 1cr0_A DNA primase/helicase; R 86.3 0.79 2.7E-05 41.7 5.2 38 207-244 33-71 (296)
147 1kgd_A CASK, peripheral plasma 85.9 0.51 1.8E-05 39.9 3.4 23 208-230 4-26 (180)
148 2yvu_A Probable adenylyl-sulfa 85.9 0.81 2.8E-05 38.5 4.7 36 208-243 12-47 (186)
149 3cmw_A Protein RECA, recombina 85.8 0.56 1.9E-05 53.7 4.6 47 208-254 1430-1476(1706)
150 4a74_A DNA repair and recombin 85.6 0.94 3.2E-05 38.8 5.0 39 208-246 24-68 (231)
151 3tau_A Guanylate kinase, GMP k 85.0 0.59 2E-05 40.5 3.4 23 208-230 7-29 (208)
152 3b85_A Phosphate starvation-in 84.9 0.8 2.7E-05 40.3 4.3 33 196-228 9-41 (208)
153 3pvs_A Replication-associated 84.9 0.89 3E-05 44.8 5.1 20 210-229 51-70 (447)
154 4fcw_A Chaperone protein CLPB; 84.7 1 3.5E-05 40.8 5.1 34 210-243 48-81 (311)
155 4a1f_A DNAB helicase, replicat 84.7 1 3.5E-05 42.9 5.2 39 207-245 44-82 (338)
156 3trf_A Shikimate kinase, SK; a 84.5 0.5 1.7E-05 39.5 2.7 22 209-230 5-26 (185)
157 2v1u_A Cell division control p 84.4 1.3 4.3E-05 41.0 5.6 23 208-230 43-65 (387)
158 3vaa_A Shikimate kinase, SK; s 84.4 0.66 2.2E-05 39.7 3.4 24 207-230 23-46 (199)
159 3cmu_A Protein RECA, recombina 84.3 0.73 2.5E-05 53.6 4.7 42 208-249 1426-1467(2050)
160 2ewv_A Twitching motility prot 84.2 0.78 2.7E-05 44.0 4.2 23 207-229 134-156 (372)
161 2r2a_A Uncharacterized protein 84.1 0.58 2E-05 41.0 3.0 37 210-246 6-47 (199)
162 2i1q_A DNA repair and recombin 83.8 1.2 4.1E-05 41.2 5.2 49 209-257 98-163 (322)
163 1nks_A Adenylate kinase; therm 83.6 2 6.7E-05 35.6 6.0 33 211-243 3-35 (194)
164 2q6t_A DNAB replication FORK h 83.6 1.1 3.8E-05 43.7 5.1 40 207-246 198-238 (444)
165 1fnn_A CDC6P, cell division co 83.6 2 6.7E-05 39.8 6.6 34 211-244 46-80 (389)
166 2gza_A Type IV secretion syste 83.6 0.73 2.5E-05 43.9 3.7 23 206-228 172-194 (361)
167 3lw7_A Adenylate kinase relate 83.5 0.56 1.9E-05 38.0 2.5 20 210-229 2-21 (179)
168 2j41_A Guanylate kinase; GMP, 83.5 0.7 2.4E-05 39.1 3.2 23 207-229 4-26 (207)
169 3hjh_A Transcription-repair-co 83.5 2 6.9E-05 42.8 7.0 52 209-263 14-65 (483)
170 1c9k_A COBU, adenosylcobinamid 83.4 0.59 2E-05 40.7 2.7 42 212-257 2-43 (180)
171 3tr0_A Guanylate kinase, GMP k 83.4 0.77 2.6E-05 38.9 3.4 22 208-229 6-27 (205)
172 2z4s_A Chromosomal replication 83.3 1.4 4.8E-05 43.0 5.7 48 209-257 130-179 (440)
173 1lvg_A Guanylate kinase, GMP k 83.2 0.73 2.5E-05 39.7 3.2 22 208-229 3-24 (198)
174 3hws_A ATP-dependent CLP prote 83.1 1.1 3.7E-05 42.2 4.7 22 208-229 50-71 (363)
175 1qhx_A CPT, protein (chloramph 83.1 0.63 2.2E-05 38.5 2.7 21 209-229 3-23 (178)
176 2r44_A Uncharacterized protein 83.1 0.64 2.2E-05 42.9 3.0 23 206-228 43-65 (331)
177 2r6a_A DNAB helicase, replicat 82.9 1.2 4.2E-05 43.5 5.1 39 207-245 201-240 (454)
178 3lda_A DNA repair protein RAD5 82.7 1.5 5E-05 42.7 5.5 39 208-246 177-221 (400)
179 3jvv_A Twitching mobility prot 82.6 1 3.4E-05 43.1 4.3 22 207-228 121-142 (356)
180 3a8t_A Adenylate isopentenyltr 82.6 0.66 2.3E-05 44.4 2.9 22 209-230 40-61 (339)
181 3e70_C DPA, signal recognition 82.6 1.9 6.6E-05 40.6 6.2 52 208-259 128-181 (328)
182 1rj9_A FTSY, signal recognitio 82.5 1.5 5E-05 41.0 5.3 35 209-243 102-136 (304)
183 3uie_A Adenylyl-sulfate kinase 82.3 1.4 4.8E-05 37.6 4.7 24 207-230 23-46 (200)
184 1q57_A DNA primase/helicase; d 82.2 1 3.6E-05 44.5 4.3 39 207-245 240-279 (503)
185 3u61_B DNA polymerase accessor 82.1 2.5 8.6E-05 38.6 6.7 48 196-246 31-82 (324)
186 2r8r_A Sensor protein; KDPD, P 82.1 1.5 5E-05 39.7 4.8 33 211-243 8-40 (228)
187 1zu4_A FTSY; GTPase, signal re 82.0 1.3 4.4E-05 41.7 4.7 62 209-270 105-171 (320)
188 2orv_A Thymidine kinase; TP4A 82.0 1.3 4.5E-05 40.2 4.6 41 208-248 18-58 (234)
189 2qby_A CDC6 homolog 1, cell di 82.0 1.8 6.2E-05 39.8 5.7 36 209-244 45-83 (386)
190 1kag_A SKI, shikimate kinase I 82.0 0.87 3E-05 37.5 3.1 22 208-229 3-24 (173)
191 3nbx_X ATPase RAVA; AAA+ ATPas 81.8 0.91 3.1E-05 45.5 3.7 27 202-228 34-60 (500)
192 2qor_A Guanylate kinase; phosp 81.7 0.98 3.3E-05 38.7 3.5 24 207-230 10-33 (204)
193 1zp6_A Hypothetical protein AT 81.7 0.79 2.7E-05 38.4 2.8 23 207-229 7-29 (191)
194 2chg_A Replication factor C sm 81.6 1.9 6.4E-05 36.0 5.2 21 210-230 39-59 (226)
195 1j8m_F SRP54, signal recogniti 81.6 1.7 5.9E-05 40.3 5.3 51 209-259 98-150 (297)
196 2ffh_A Protein (FFH); SRP54, s 81.6 2.4 8.2E-05 41.6 6.6 51 209-259 98-150 (425)
197 1kht_A Adenylate kinase; phosp 81.5 0.77 2.6E-05 38.2 2.7 22 209-230 3-24 (192)
198 1y63_A LMAJ004144AAA protein; 81.4 0.79 2.7E-05 38.8 2.7 22 208-229 9-30 (184)
199 3iij_A Coilin-interacting nucl 81.3 0.83 2.9E-05 38.1 2.8 22 208-229 10-31 (180)
200 2qz4_A Paraplegin; AAA+, SPG7, 81.0 0.8 2.7E-05 40.3 2.7 21 209-229 39-59 (262)
201 2ze6_A Isopentenyl transferase 80.9 0.71 2.4E-05 41.6 2.4 19 211-229 3-21 (253)
202 3h4m_A Proteasome-activating n 80.7 0.8 2.7E-05 41.1 2.6 22 208-229 50-71 (285)
203 1ofh_A ATP-dependent HSL prote 80.7 1.1 3.6E-05 40.4 3.5 22 208-229 49-70 (310)
204 3b9q_A Chloroplast SRP recepto 80.6 1.6 5.3E-05 40.7 4.7 37 208-244 99-135 (302)
205 2xxa_A Signal recognition part 80.6 2.2 7.7E-05 41.8 6.0 46 210-255 101-149 (433)
206 2pt7_A CAG-ALFA; ATPase, prote 80.5 0.92 3.2E-05 42.7 3.1 22 206-227 168-189 (330)
207 3b9p_A CG5977-PA, isoform A; A 80.5 1 3.5E-05 40.6 3.3 21 209-229 54-74 (297)
208 3a00_A Guanylate kinase, GMP k 80.5 1.1 3.8E-05 37.8 3.4 21 209-229 1-21 (186)
209 3uk6_A RUVB-like 2; hexameric 80.3 1 3.5E-05 41.9 3.3 22 209-230 70-91 (368)
210 1njg_A DNA polymerase III subu 80.2 1.7 5.9E-05 36.6 4.5 34 196-229 28-65 (250)
211 3exa_A TRNA delta(2)-isopenten 80.1 0.91 3.1E-05 43.1 2.9 22 209-230 3-24 (322)
212 3cf0_A Transitional endoplasmi 79.8 1.1 3.8E-05 41.1 3.3 21 208-228 48-68 (301)
213 1z6g_A Guanylate kinase; struc 79.7 1.2 4.3E-05 38.8 3.5 22 207-228 21-42 (218)
214 2pez_A Bifunctional 3'-phospho 79.6 2 6.9E-05 35.7 4.7 22 208-229 4-25 (179)
215 1rz3_A Hypothetical protein rb 79.6 1.9 6.4E-05 36.9 4.6 35 209-243 22-56 (201)
216 1pzn_A RAD51, DNA repair and r 79.5 1.7 5.8E-05 41.2 4.6 38 208-245 130-173 (349)
217 3ney_A 55 kDa erythrocyte memb 79.4 1.3 4.3E-05 39.0 3.4 23 208-230 18-40 (197)
218 3foz_A TRNA delta(2)-isopenten 79.4 1 3.5E-05 42.6 3.0 21 210-230 11-31 (316)
219 4gp7_A Metallophosphoesterase; 79.2 0.85 2.9E-05 38.2 2.2 21 208-228 8-28 (171)
220 1lv7_A FTSH; alpha/beta domain 79.1 0.97 3.3E-05 40.0 2.7 21 209-229 45-65 (257)
221 3cm0_A Adenylate kinase; ATP-b 79.0 0.73 2.5E-05 38.4 1.7 22 208-229 3-24 (186)
222 1m7g_A Adenylylsulfate kinase; 78.9 2 6.9E-05 36.9 4.6 33 196-229 13-45 (211)
223 1knq_A Gluconate kinase; ALFA/ 78.9 0.89 3E-05 37.6 2.2 20 209-228 8-27 (175)
224 3cmu_A Protein RECA, recombina 78.8 1.8 6.3E-05 50.3 5.3 38 207-244 1079-1116(2050)
225 2bwj_A Adenylate kinase 5; pho 78.7 1.1 3.8E-05 37.6 2.7 24 206-229 9-32 (199)
226 2qmh_A HPR kinase/phosphorylas 78.6 1.1 3.7E-05 40.0 2.7 23 208-230 33-55 (205)
227 3kb2_A SPBC2 prophage-derived 78.5 1 3.6E-05 36.7 2.5 19 211-229 3-21 (173)
228 1ly1_A Polynucleotide kinase; 78.5 0.99 3.4E-05 37.1 2.4 20 210-229 3-22 (181)
229 1tf7_A KAIC; homohexamer, hexa 78.4 2.2 7.6E-05 42.5 5.3 50 207-257 279-328 (525)
230 1d2n_A N-ethylmaleimide-sensit 78.1 1.2 4.3E-05 39.8 3.1 20 210-229 65-84 (272)
231 2c95_A Adenylate kinase 1; tra 78.1 1.2 4E-05 37.3 2.7 23 207-229 7-29 (196)
232 4eun_A Thermoresistant glucoki 78.1 1.5 5.1E-05 37.5 3.4 23 207-229 27-49 (200)
233 1znw_A Guanylate kinase, GMP k 77.9 1.5 5.2E-05 37.7 3.4 24 205-228 16-39 (207)
234 3te6_A Regulatory protein SIR3 77.9 1 3.6E-05 42.5 2.5 24 208-231 44-67 (318)
235 1nn5_A Similar to deoxythymidy 77.9 2.8 9.6E-05 35.4 5.2 23 208-230 8-30 (215)
236 1tev_A UMP-CMP kinase; ploop, 77.5 1 3.5E-05 37.5 2.1 20 209-228 3-22 (196)
237 1w36_B RECB, exodeoxyribonucle 77.3 3.9 0.00013 45.0 7.2 53 210-262 17-81 (1180)
238 2zpa_A Uncharacterized protein 77.3 2.6 9E-05 43.8 5.5 60 194-256 175-236 (671)
239 1ls1_A Signal recognition part 77.3 2.3 7.7E-05 39.3 4.6 88 209-297 98-192 (295)
240 1ex7_A Guanylate kinase; subst 77.2 1.5 5.2E-05 38.0 3.2 21 210-230 2-22 (186)
241 3a4m_A L-seryl-tRNA(SEC) kinas 77.1 2.4 8.3E-05 38.0 4.7 35 209-243 4-38 (260)
242 1ny5_A Transcriptional regulat 77.1 2.4 8.1E-05 40.6 4.9 86 207-298 158-244 (387)
243 3eie_A Vacuolar protein sortin 77.0 1.2 4E-05 41.3 2.6 21 209-229 51-71 (322)
244 2og2_A Putative signal recogni 76.9 2.2 7.7E-05 40.8 4.6 61 208-269 156-218 (359)
245 3cmw_A Protein RECA, recombina 76.9 2.2 7.6E-05 48.9 5.2 38 209-246 34-71 (1706)
246 2rhm_A Putative kinase; P-loop 76.6 1.1 3.9E-05 37.3 2.2 21 209-229 5-25 (193)
247 1um8_A ATP-dependent CLP prote 76.5 1.6 5.5E-05 41.1 3.5 22 208-229 71-92 (376)
248 1xjc_A MOBB protein homolog; s 76.5 2.9 0.0001 35.7 4.8 34 211-244 6-39 (169)
249 3d3q_A TRNA delta(2)-isopenten 76.4 1.4 4.9E-05 42.0 3.1 19 211-229 9-27 (340)
250 3dzd_A Transcriptional regulat 76.3 1.4 4.7E-05 42.1 3.0 86 207-299 150-236 (368)
251 3crm_A TRNA delta(2)-isopenten 76.3 1.4 4.9E-05 41.7 3.0 21 210-230 6-26 (323)
252 2wwf_A Thymidilate kinase, put 76.3 3.3 0.00011 35.0 5.1 23 208-230 9-31 (212)
253 2v9p_A Replication protein E1; 76.1 2.2 7.5E-05 40.0 4.2 23 207-229 124-146 (305)
254 1s96_A Guanylate kinase, GMP k 75.9 1.8 6.2E-05 38.2 3.4 23 206-228 13-35 (219)
255 3pfi_A Holliday junction ATP-d 75.8 1.4 4.8E-05 40.5 2.8 20 210-229 56-75 (338)
256 1xwi_A SKD1 protein; VPS4B, AA 75.7 1.6 5.6E-05 40.5 3.3 21 209-229 45-65 (322)
257 3lnc_A Guanylate kinase, GMP k 75.5 1.3 4.3E-05 38.8 2.3 24 207-230 25-48 (231)
258 2z0h_A DTMP kinase, thymidylat 75.5 3.3 0.00011 34.5 4.9 32 211-242 2-33 (197)
259 3c8u_A Fructokinase; YP_612366 75.4 2.8 9.5E-05 36.0 4.5 21 208-228 21-41 (208)
260 2v3c_C SRP54, signal recogniti 75.4 1.6 5.4E-05 42.9 3.2 35 210-244 100-134 (432)
261 2v54_A DTMP kinase, thymidylat 75.3 1.5 5.3E-05 36.9 2.7 23 208-230 3-25 (204)
262 2plr_A DTMP kinase, probable t 75.3 4.9 0.00017 33.7 5.9 23 208-230 3-25 (213)
263 3asz_A Uridine kinase; cytidin 75.1 1.5 5E-05 37.5 2.5 21 208-228 5-25 (211)
264 3u4q_B ATP-dependent helicase/ 75.0 2.5 8.6E-05 46.3 4.9 49 212-261 4-55 (1166)
265 3t15_A Ribulose bisphosphate c 74.8 1.7 5.9E-05 39.8 3.1 20 210-229 37-56 (293)
266 1zd8_A GTP:AMP phosphotransfer 74.7 1.5 5.2E-05 38.1 2.6 22 208-229 6-27 (227)
267 2iyv_A Shikimate kinase, SK; t 74.5 1.7 5.7E-05 36.2 2.7 20 210-229 3-22 (184)
268 1hqc_A RUVB; extended AAA-ATPa 74.4 1.2 4E-05 40.6 1.9 21 209-229 38-58 (324)
269 2bdt_A BH3686; alpha-beta prot 74.2 1.5 5.1E-05 36.8 2.3 21 209-229 2-22 (189)
270 3t61_A Gluconokinase; PSI-biol 74.1 1.7 5.7E-05 37.0 2.6 21 209-229 18-38 (202)
271 2qp9_X Vacuolar protein sortin 74.0 2 6.9E-05 40.5 3.4 20 209-228 84-103 (355)
272 2pbr_A DTMP kinase, thymidylat 74.0 4 0.00014 33.7 5.0 20 211-230 2-21 (195)
273 2cdn_A Adenylate kinase; phosp 73.9 1.7 6E-05 36.8 2.7 22 209-230 20-41 (201)
274 1aky_A Adenylate kinase; ATP:A 73.9 1.7 5.9E-05 37.5 2.7 22 208-229 3-24 (220)
275 3fb4_A Adenylate kinase; psych 73.8 1.6 5.6E-05 37.3 2.5 19 211-229 2-20 (216)
276 2c9o_A RUVB-like 1; hexameric 73.8 1.9 6.6E-05 42.1 3.3 20 209-228 63-82 (456)
277 2vhj_A Ntpase P4, P4; non- hyd 73.6 0.92 3.1E-05 43.3 0.9 34 209-245 123-156 (331)
278 2yhs_A FTSY, cell division pro 73.2 3 0.0001 41.9 4.6 35 209-243 293-327 (503)
279 1e6c_A Shikimate kinase; phosp 73.2 1.8 6.2E-05 35.4 2.6 20 210-229 3-22 (173)
280 3d8b_A Fidgetin-like protein 1 73.1 2.2 7.4E-05 40.2 3.4 21 209-229 117-137 (357)
281 3vfd_A Spastin; ATPase, microt 73.1 1.7 5.7E-05 41.4 2.6 21 209-229 148-168 (389)
282 1via_A Shikimate kinase; struc 73.0 1.8 6.2E-05 35.8 2.6 20 210-229 5-24 (175)
283 3qf7_A RAD50; ABC-ATPase, ATPa 73.0 2.6 8.9E-05 40.1 3.9 18 211-228 25-42 (365)
284 2j37_W Signal recognition part 72.9 4.7 0.00016 40.4 6.0 36 210-245 102-137 (504)
285 2qt1_A Nicotinamide riboside k 72.9 1.8 6.1E-05 36.9 2.5 22 208-229 20-41 (207)
286 2r62_A Cell division protease 72.8 0.9 3.1E-05 40.4 0.6 21 209-229 44-64 (268)
287 1tf7_A KAIC; homohexamer, hexa 72.7 3 0.0001 41.5 4.5 37 208-244 38-75 (525)
288 1ixz_A ATP-dependent metallopr 72.7 2.3 7.9E-05 37.5 3.3 19 210-228 50-68 (254)
289 3eph_A TRNA isopentenyltransfe 72.6 1.9 6.5E-05 42.2 2.9 20 211-230 4-23 (409)
290 1sxj_D Activator 1 41 kDa subu 72.4 2.9 0.0001 38.2 4.1 20 210-229 59-78 (353)
291 3pxi_A Negative regulator of g 72.3 3.4 0.00012 43.0 4.9 20 211-230 523-542 (758)
292 1cke_A CK, MSSA, protein (cyti 72.3 2.2 7.4E-05 36.7 2.9 21 209-229 5-25 (227)
293 3dl0_A Adenylate kinase; phosp 72.0 2.2 7.4E-05 36.6 2.9 19 211-229 2-20 (216)
294 1sxj_C Activator 1 40 kDa subu 71.9 3.1 0.00011 38.5 4.2 24 206-229 41-66 (340)
295 1gvn_B Zeta; postsegregational 71.7 1.6 5.4E-05 40.1 2.0 21 209-229 33-53 (287)
296 1ihu_A Arsenical pump-driving 71.6 4 0.00014 41.1 5.2 36 209-244 8-43 (589)
297 1iqp_A RFCS; clamp loader, ext 71.6 3.6 0.00012 37.0 4.5 33 197-229 31-66 (327)
298 1g8p_A Magnesium-chelatase 38 71.6 1.1 3.6E-05 41.3 0.8 22 208-229 44-65 (350)
299 3k1j_A LON protease, ATP-depen 71.4 4.1 0.00014 41.3 5.2 24 206-229 57-80 (604)
300 1zak_A Adenylate kinase; ATP:A 71.3 2.7 9.3E-05 36.2 3.4 21 209-229 5-25 (222)
301 1zuh_A Shikimate kinase; alpha 71.2 2.4 8.1E-05 34.8 2.8 20 210-229 8-27 (168)
302 1w5s_A Origin recognition comp 71.1 6.7 0.00023 36.5 6.3 22 209-230 50-73 (412)
303 2if2_A Dephospho-COA kinase; a 71.0 2 7E-05 36.3 2.4 19 211-229 3-21 (204)
304 1byi_A Dethiobiotin synthase; 71.0 5 0.00017 34.3 5.0 33 213-245 6-38 (224)
305 1qf9_A UMP/CMP kinase, protein 70.8 2 6.8E-05 35.5 2.3 20 210-229 7-26 (194)
306 2pt5_A Shikimate kinase, SK; a 70.8 2.5 8.4E-05 34.5 2.8 19 211-229 2-20 (168)
307 4b4t_M 26S protease regulatory 70.1 2.5 8.6E-05 41.6 3.2 20 209-228 215-234 (434)
308 1ukz_A Uridylate kinase; trans 69.8 2.1 7.1E-05 36.3 2.2 20 209-228 15-34 (203)
309 2vli_A Antibiotic resistance p 69.8 1.6 5.5E-05 36.1 1.5 21 209-229 5-25 (183)
310 2jaq_A Deoxyguanosine kinase; 69.7 2.3 7.9E-05 35.6 2.5 19 211-229 2-20 (205)
311 3kjh_A CO dehydrogenase/acetyl 69.6 4.1 0.00014 35.1 4.2 32 212-243 3-34 (254)
312 1qvr_A CLPB protein; coiled co 69.4 3.9 0.00013 43.3 4.7 34 210-243 589-622 (854)
313 4edh_A DTMP kinase, thymidylat 69.2 5.3 0.00018 35.0 4.9 36 207-242 4-39 (213)
314 3bs4_A Uncharacterized protein 69.2 3.7 0.00013 37.6 3.9 50 208-258 20-69 (260)
315 1in4_A RUVB, holliday junction 69.2 2.9 9.9E-05 38.9 3.3 20 210-229 52-71 (334)
316 3zq6_A Putative arsenical pump 69.0 4.9 0.00017 37.3 4.8 35 210-244 15-49 (324)
317 4b4t_J 26S protease regulatory 68.8 2.3 7.7E-05 41.6 2.5 22 208-229 181-202 (405)
318 3be4_A Adenylate kinase; malar 68.5 3 0.0001 36.0 3.0 21 209-229 5-25 (217)
319 1iy2_A ATP-dependent metallopr 68.4 3.3 0.00011 37.2 3.3 19 210-228 74-92 (278)
320 2woo_A ATPase GET3; tail-ancho 68.3 5.9 0.0002 36.9 5.2 34 210-243 20-53 (329)
321 3nwj_A ATSK2; P loop, shikimat 68.3 3.6 0.00012 37.2 3.6 22 208-229 47-68 (250)
322 1gtv_A TMK, thymidylate kinase 68.2 2.1 7.3E-05 36.3 2.0 20 211-230 2-21 (214)
323 3tif_A Uncharacterized ABC tra 68.1 2.7 9.3E-05 37.4 2.7 21 208-228 30-50 (235)
324 1ak2_A Adenylate kinase isoenz 68.1 3.5 0.00012 36.0 3.4 22 208-229 15-36 (233)
325 2ius_A DNA translocase FTSK; n 68.0 3.5 0.00012 41.4 3.8 24 208-231 166-189 (512)
326 1odf_A YGR205W, hypothetical 3 68.0 2.4 8.2E-05 39.2 2.4 19 210-228 32-50 (290)
327 4b4t_L 26S protease subunit RP 68.0 2.4 8.2E-05 41.8 2.5 21 209-229 215-235 (437)
328 1sq5_A Pantothenate kinase; P- 68.0 5.3 0.00018 36.8 4.8 21 208-228 79-99 (308)
329 1ye8_A Protein THEP1, hypothet 67.9 3.4 0.00012 35.1 3.2 18 211-228 2-19 (178)
330 1g3q_A MIND ATPase, cell divis 67.9 5.1 0.00017 34.5 4.4 31 213-243 7-37 (237)
331 3kta_A Chromosome segregation 67.8 3.4 0.00012 34.2 3.2 18 211-228 28-45 (182)
332 2zan_A Vacuolar protein sortin 67.8 3.1 0.00011 40.5 3.3 20 209-228 167-186 (444)
333 1np6_A Molybdopterin-guanine d 67.7 6.2 0.00021 33.6 4.8 20 210-229 7-26 (174)
334 1uf9_A TT1252 protein; P-loop, 67.6 2.7 9.3E-05 35.2 2.5 20 210-229 9-28 (203)
335 4e22_A Cytidylate kinase; P-lo 67.4 3.6 0.00012 36.7 3.4 23 208-230 26-48 (252)
336 3of5_A Dethiobiotin synthetase 67.1 6.4 0.00022 34.8 5.0 35 211-245 6-41 (228)
337 3pxg_A Negative regulator of g 67.0 4.3 0.00015 39.8 4.1 23 208-230 200-222 (468)
338 1yrb_A ATP(GTP)binding protein 66.9 6.3 0.00021 34.5 4.9 34 210-244 15-48 (262)
339 1e4v_A Adenylate kinase; trans 66.7 3.6 0.00012 35.3 3.2 20 211-230 2-21 (214)
340 2bbw_A Adenylate kinase 4, AK4 66.7 3.7 0.00013 36.1 3.3 21 209-229 27-47 (246)
341 1hyq_A MIND, cell division inh 66.7 6.3 0.00021 34.6 4.8 31 213-243 7-37 (263)
342 1f2t_A RAD50 ABC-ATPase; DNA d 66.5 3.9 0.00013 33.6 3.2 18 211-228 25-42 (149)
343 4dzz_A Plasmid partitioning pr 66.4 4.8 0.00016 33.7 3.8 30 214-243 7-36 (206)
344 4b4t_K 26S protease regulatory 66.4 3.4 0.00012 40.6 3.2 20 209-228 206-225 (428)
345 1tue_A Replication protein E1; 66.1 2.9 0.0001 37.3 2.5 19 210-228 59-77 (212)
346 3hu3_A Transitional endoplasmi 65.9 3 0.0001 41.5 2.8 22 208-229 237-258 (489)
347 1jjv_A Dephospho-COA kinase; P 65.9 3.3 0.00011 35.1 2.7 19 211-229 4-22 (206)
348 3tlx_A Adenylate kinase 2; str 65.2 5 0.00017 35.5 3.9 23 208-230 28-50 (243)
349 3ug7_A Arsenical pump-driving 65.1 6.4 0.00022 37.0 4.8 34 211-244 28-61 (349)
350 1u0j_A DNA replication protein 64.9 6.8 0.00023 36.1 4.8 19 211-229 106-124 (267)
351 3p32_A Probable GTPase RV1496/ 64.8 6.9 0.00023 36.8 5.0 33 211-243 81-113 (355)
352 2i3b_A HCR-ntpase, human cance 64.7 4.5 0.00016 34.8 3.4 20 209-228 1-20 (189)
353 3q9l_A Septum site-determining 64.6 6.3 0.00022 34.4 4.4 31 213-243 7-37 (260)
354 4eaq_A DTMP kinase, thymidylat 64.6 6.8 0.00023 34.5 4.6 33 208-241 25-57 (229)
355 1g41_A Heat shock protein HSLU 64.4 3.4 0.00012 40.8 2.8 20 209-228 50-69 (444)
356 2x8a_A Nuclear valosin-contain 64.3 3.9 0.00013 37.1 3.1 19 210-228 45-63 (274)
357 2cbz_A Multidrug resistance-as 64.2 4 0.00014 36.3 3.1 21 208-228 30-50 (237)
358 1qvr_A CLPB protein; coiled co 64.1 7.9 0.00027 40.9 5.7 22 209-230 191-212 (854)
359 1nij_A Hypothetical protein YJ 64.1 5.8 0.0002 36.8 4.2 18 211-228 6-23 (318)
360 2jeo_A Uridine-cytidine kinase 64.1 3.5 0.00012 36.4 2.6 22 207-228 23-44 (245)
361 2p5t_B PEZT; postsegregational 63.9 2.1 7.1E-05 38.2 1.1 21 209-229 32-52 (253)
362 2ph1_A Nucleotide-binding prot 63.9 6.6 0.00022 34.9 4.4 31 213-243 23-53 (262)
363 3qxc_A Dethiobiotin synthetase 63.6 8.2 0.00028 34.7 5.0 36 210-245 22-58 (242)
364 3auy_A DNA double-strand break 63.5 4.1 0.00014 38.5 3.2 19 210-228 26-44 (371)
365 3cio_A ETK, tyrosine-protein k 63.5 8.2 0.00028 35.5 5.1 34 210-243 105-139 (299)
366 4tmk_A Protein (thymidylate ki 63.3 9 0.00031 33.6 5.1 31 208-238 2-32 (213)
367 2chq_A Replication factor C sm 63.3 4.8 0.00016 36.0 3.4 19 211-229 40-58 (319)
368 3m6a_A ATP-dependent protease 63.3 3.4 0.00012 41.5 2.6 21 208-228 107-127 (543)
369 3end_A Light-independent proto 63.2 7.3 0.00025 35.3 4.7 36 208-243 40-75 (307)
370 3pxi_A Negative regulator of g 63.1 5.3 0.00018 41.5 4.1 23 208-230 200-222 (758)
371 1cp2_A CP2, nitrogenase iron p 63.0 8.3 0.00028 34.0 4.9 32 212-243 4-35 (269)
372 2xb4_A Adenylate kinase; ATP-b 62.6 3.8 0.00013 35.7 2.5 19 211-229 2-20 (223)
373 1sxj_E Activator 1 40 kDa subu 62.6 4 0.00014 37.5 2.8 18 211-228 38-55 (354)
374 2pze_A Cystic fibrosis transme 62.5 4.5 0.00016 35.7 3.0 21 208-228 33-53 (229)
375 1vht_A Dephospho-COA kinase; s 62.5 3.9 0.00013 35.0 2.6 21 209-229 4-24 (218)
376 3tqc_A Pantothenate kinase; bi 62.0 15 0.00051 34.5 6.7 18 211-228 94-111 (321)
377 2ghi_A Transport protein; mult 61.7 4.7 0.00016 36.4 3.1 21 208-228 45-65 (260)
378 1sgw_A Putative ABC transporte 61.6 4.9 0.00017 35.3 3.1 21 208-228 34-54 (214)
379 3lv8_A DTMP kinase, thymidylat 61.5 10 0.00034 34.0 5.2 32 208-239 26-57 (236)
380 3bfv_A CAPA1, CAPB2, membrane 61.5 9.9 0.00034 34.4 5.2 34 210-243 83-117 (271)
381 2ff7_A Alpha-hemolysin translo 61.5 4.8 0.00017 36.0 3.1 21 208-228 34-54 (247)
382 3ea0_A ATPase, para family; al 61.4 9.7 0.00033 32.8 5.0 31 213-243 9-40 (245)
383 1g6h_A High-affinity branched- 61.4 4.3 0.00015 36.5 2.7 21 208-228 32-52 (257)
384 3gfo_A Cobalt import ATP-bindi 61.4 4.7 0.00016 37.0 3.0 21 208-228 33-53 (275)
385 3iqw_A Tail-anchored protein t 61.3 9.7 0.00033 35.8 5.3 35 210-244 17-51 (334)
386 4b4t_H 26S protease regulatory 61.3 4.1 0.00014 40.6 2.7 21 208-228 242-262 (467)
387 2pcj_A ABC transporter, lipopr 61.0 4.9 0.00017 35.3 3.0 21 208-228 29-49 (224)
388 2iut_A DNA translocase FTSK; n 60.9 9.4 0.00032 39.0 5.4 23 209-231 214-236 (574)
389 1ry6_A Internal kinesin; kines 60.8 4.7 0.00016 38.7 3.0 34 194-227 59-103 (360)
390 2afh_E Nitrogenase iron protei 60.7 8.9 0.00031 34.4 4.8 32 212-243 5-36 (289)
391 1ji0_A ABC transporter; ATP bi 60.5 5.2 0.00018 35.6 3.1 21 208-228 31-51 (240)
392 4g1u_C Hemin import ATP-bindin 60.4 5.1 0.00017 36.4 3.0 21 208-228 36-56 (266)
393 2oze_A ORF delta'; para, walke 60.3 9.3 0.00032 34.3 4.8 36 208-243 33-71 (298)
394 1r6b_X CLPA protein; AAA+, N-t 60.3 6.8 0.00023 40.5 4.3 23 208-230 206-228 (758)
395 2zu0_C Probable ATP-dependent 60.2 5.8 0.0002 35.9 3.4 21 208-228 45-65 (267)
396 3f9v_A Minichromosome maintena 60.1 3.8 0.00013 41.7 2.4 18 211-228 329-346 (595)
397 2d2e_A SUFC protein; ABC-ATPas 60.0 6 0.00021 35.4 3.4 21 208-228 28-48 (250)
398 1mv5_A LMRA, multidrug resista 60.0 4.5 0.00015 36.0 2.5 21 208-228 27-47 (243)
399 3v9p_A DTMP kinase, thymidylat 60.0 6.7 0.00023 34.9 3.7 25 206-230 22-46 (227)
400 1htw_A HI0065; nucleotide-bind 59.8 5.5 0.00019 33.3 2.9 22 207-228 31-52 (158)
401 1q3t_A Cytidylate kinase; nucl 59.6 6.3 0.00022 34.4 3.4 23 207-229 14-36 (236)
402 4b4t_I 26S protease regulatory 59.4 5.4 0.00018 39.4 3.2 21 209-229 216-236 (437)
403 3aez_A Pantothenate kinase; tr 59.3 5.1 0.00018 37.3 2.9 21 208-228 89-109 (312)
404 3ake_A Cytidylate kinase; CMP 59.1 4.6 0.00016 33.9 2.4 19 211-229 4-22 (208)
405 4akg_A Glutathione S-transfera 59.0 5.1 0.00018 47.9 3.5 24 206-229 1264-1287(2695)
406 2ce7_A Cell division protein F 59.0 4.5 0.00015 40.2 2.6 20 209-228 49-68 (476)
407 4akg_A Glutathione S-transfera 59.0 9.3 0.00032 45.8 5.6 24 206-229 920-943 (2695)
408 2grj_A Dephospho-COA kinase; T 58.8 5.3 0.00018 34.5 2.7 21 210-230 13-33 (192)
409 2vp4_A Deoxynucleoside kinase; 58.8 4.4 0.00015 35.4 2.2 21 208-228 19-39 (230)
410 1jr3_A DNA polymerase III subu 58.7 7.1 0.00024 35.9 3.8 19 211-229 40-58 (373)
411 3cwq_A Para family chromosome 58.7 11 0.00038 32.4 4.8 30 213-243 5-34 (209)
412 2yz2_A Putative ABC transporte 58.4 5.8 0.0002 35.9 3.1 21 208-228 32-52 (266)
413 3fgn_A Dethiobiotin synthetase 58.3 10 0.00035 34.2 4.7 32 213-244 31-62 (251)
414 1b0u_A Histidine permease; ABC 58.3 5.8 0.0002 35.8 3.0 21 208-228 31-51 (262)
415 1ltq_A Polynucleotide kinase; 58.3 4.6 0.00016 36.4 2.4 20 210-229 3-22 (301)
416 3nwn_A Kinesin-like protein KI 58.3 7.4 0.00025 37.3 3.9 21 206-226 100-122 (359)
417 3nh6_A ATP-binding cassette SU 58.2 4.3 0.00015 37.9 2.2 21 208-228 79-99 (306)
418 2qi9_C Vitamin B12 import ATP- 58.1 6 0.0002 35.6 3.0 21 208-228 25-45 (249)
419 1uj2_A Uridine-cytidine kinase 58.1 5.4 0.00018 35.3 2.7 19 211-229 24-42 (252)
420 2woj_A ATPase GET3; tail-ancho 57.9 11 0.00036 35.7 4.9 35 210-244 19-55 (354)
421 2ixe_A Antigen peptide transpo 57.8 6 0.00021 36.0 3.1 21 208-228 44-64 (271)
422 1vpl_A ABC transporter, ATP-bi 57.8 6 0.00021 35.7 3.0 21 208-228 40-60 (256)
423 1sxj_B Activator 1 37 kDa subu 57.6 7.1 0.00024 34.9 3.5 20 211-230 44-63 (323)
424 2qm8_A GTPase/ATPase; G protei 57.6 10 0.00034 35.6 4.6 22 207-228 53-74 (337)
425 1bg2_A Kinesin; motor protein, 57.5 8 0.00027 36.5 4.0 33 195-227 54-96 (325)
426 2nq2_C Hypothetical ABC transp 57.5 6 0.00021 35.6 3.0 21 208-228 30-50 (253)
427 2p67_A LAO/AO transport system 57.4 9.9 0.00034 35.5 4.6 21 208-228 55-75 (341)
428 3qks_A DNA double-strand break 57.4 6.8 0.00023 33.8 3.2 18 211-228 25-42 (203)
429 3sr0_A Adenylate kinase; phosp 57.3 6.8 0.00023 34.2 3.2 19 211-229 2-20 (206)
430 2f1r_A Molybdopterin-guanine d 57.2 7.5 0.00026 32.9 3.4 21 210-230 3-23 (171)
431 2h92_A Cytidylate kinase; ross 57.0 5.9 0.0002 33.8 2.7 20 209-228 3-22 (219)
432 2ihy_A ABC transporter, ATP-bi 56.8 6.3 0.00022 36.1 3.0 21 208-228 46-66 (279)
433 1ypw_A Transitional endoplasmi 56.7 5.6 0.00019 42.0 3.0 22 208-229 237-258 (806)
434 3ice_A Transcription terminati 56.6 17 0.00057 35.7 6.1 33 196-228 158-193 (422)
435 1r6b_X CLPA protein; AAA+, N-t 56.5 7.9 0.00027 40.0 4.1 19 211-229 490-508 (758)
436 2olj_A Amino acid ABC transpor 56.2 6.6 0.00023 35.6 3.0 21 208-228 49-69 (263)
437 3bfn_A Kinesin-like protein KI 55.9 5.8 0.0002 38.5 2.7 33 194-226 74-116 (388)
438 3io3_A DEHA2D07832P; chaperone 55.6 14 0.00047 35.0 5.3 35 210-244 19-55 (348)
439 2qen_A Walker-type ATPase; unk 55.5 14 0.0005 33.1 5.3 34 196-229 17-51 (350)
440 2y65_A Kinesin, kinesin heavy 55.3 9 0.00031 36.7 4.0 33 194-226 60-102 (365)
441 4a14_A Kinesin, kinesin-like p 55.2 9.2 0.00031 36.3 3.9 33 194-226 59-101 (344)
442 3qkt_A DNA double-strand break 55.0 5.5 0.00019 37.1 2.4 18 211-228 25-42 (339)
443 3dc4_A Kinesin-like protein NO 54.9 8.5 0.00029 36.6 3.7 33 194-226 70-112 (344)
444 2h58_A Kinesin-like protein KI 54.6 9.5 0.00033 36.0 3.9 24 203-226 73-98 (330)
445 2jgn_A DBX, DDX3, ATP-dependen 54.5 35 0.0012 28.6 7.2 55 219-274 29-83 (185)
446 2vvg_A Kinesin-2; motor protei 54.4 9.6 0.00033 36.3 4.0 33 194-226 65-107 (350)
447 4etp_A Kinesin-like protein KA 54.4 10 0.00036 36.8 4.3 22 206-227 136-159 (403)
448 3b6u_A Kinesin-like protein KI 54.2 9.4 0.00032 36.7 3.9 33 194-226 77-119 (372)
449 2nr8_A Kinesin-like protein KI 54.2 9.5 0.00033 36.5 3.9 21 206-226 99-121 (358)
450 2f6r_A COA synthase, bifunctio 54.1 6.5 0.00022 35.7 2.6 20 210-229 76-95 (281)
451 1svm_A Large T antigen; AAA+ f 54.1 8.2 0.00028 37.1 3.4 23 207-229 167-189 (377)
452 3gbj_A KIF13B protein; kinesin 53.8 9.7 0.00033 36.3 3.9 21 206-226 88-110 (354)
453 1goj_A Kinesin, kinesin heavy 53.7 9.3 0.00032 36.5 3.7 33 194-226 56-98 (355)
454 1t5c_A CENP-E protein, centrom 53.7 9.8 0.00034 36.2 3.9 33 194-226 53-95 (349)
455 3lre_A Kinesin-like protein KI 53.7 9.2 0.00032 36.5 3.7 33 194-226 81-123 (355)
456 2zfi_A Kinesin-like protein KI 53.6 10 0.00034 36.4 4.0 21 206-226 85-107 (366)
457 3umf_A Adenylate kinase; rossm 53.6 7.7 0.00026 34.3 3.0 22 208-229 28-49 (217)
458 1x88_A Kinesin-like protein KI 53.4 9.7 0.00033 36.4 3.8 34 194-227 64-107 (359)
459 2bbs_A Cystic fibrosis transme 53.3 7.7 0.00026 35.8 3.0 21 208-228 63-83 (290)
460 1f9v_A Kinesin-like protein KA 53.2 7.1 0.00024 37.2 2.8 32 195-226 62-102 (347)
461 2xj4_A MIPZ; replication, cell 53.1 10 0.00036 34.1 3.8 30 214-243 10-39 (286)
462 1pui_A ENGB, probable GTP-bind 53.1 6.1 0.00021 33.1 2.1 18 209-226 26-43 (210)
463 2www_A Methylmalonic aciduria 53.0 13 0.00045 34.9 4.6 22 209-230 74-95 (349)
464 2fna_A Conserved hypothetical 52.8 16 0.00056 32.8 5.1 34 196-230 18-51 (357)
465 3u06_A Protein claret segregat 52.7 10 0.00035 37.0 3.9 24 203-226 131-156 (412)
466 1a7j_A Phosphoribulokinase; tr 52.5 7 0.00024 35.8 2.6 20 210-229 6-25 (290)
467 3k9g_A PF-32 protein; ssgcid, 52.0 11 0.00038 33.2 3.8 33 210-243 28-61 (267)
468 3r20_A Cytidylate kinase; stru 51.9 9.6 0.00033 34.1 3.3 21 209-229 9-29 (233)
469 3cob_A Kinesin heavy chain-lik 51.8 9.5 0.00032 36.7 3.5 23 204-226 73-97 (369)
470 3b5x_A Lipid A export ATP-bind 51.8 10 0.00034 38.2 3.9 22 207-228 367-388 (582)
471 1v8k_A Kinesin-like protein KI 51.6 12 0.00041 36.5 4.2 34 194-227 130-173 (410)
472 2wbe_C Bipolar kinesin KRP-130 51.3 10 0.00036 36.4 3.7 33 194-226 76-118 (373)
473 2pjz_A Hypothetical protein ST 51.1 8.5 0.00029 34.9 2.9 20 209-228 30-49 (263)
474 2dhr_A FTSH; AAA+ protein, hex 51.1 7.2 0.00025 39.0 2.6 19 210-228 65-83 (499)
475 1wcv_1 SOJ, segregation protei 51.1 9 0.00031 33.8 3.0 34 210-243 7-41 (257)
476 3la6_A Tyrosine-protein kinase 50.8 17 0.00058 33.2 4.9 34 210-243 93-127 (286)
477 2rep_A Kinesin-like protein KI 50.7 7.3 0.00025 37.6 2.5 33 195-227 93-134 (376)
478 2heh_A KIF2C protein; kinesin, 50.2 12 0.0004 36.3 3.9 34 194-227 110-153 (387)
479 3t0q_A AGR253WP; kinesin, alph 49.5 10 0.00036 36.0 3.3 21 206-226 81-103 (349)
480 3vkg_A Dynein heavy chain, cyt 49.3 7.1 0.00024 47.5 2.5 21 206-226 1301-1321(3245)
481 3hjn_A DTMP kinase, thymidylat 48.9 20 0.00069 30.7 4.8 32 212-243 3-34 (197)
482 2ce2_X GTPase HRAS; signaling 48.5 8.9 0.00031 30.0 2.3 18 211-228 5-22 (166)
483 4a82_A Cystic fibrosis transme 48.4 8.7 0.0003 38.7 2.7 20 208-227 366-385 (578)
484 2npi_A Protein CLP1; CLP1-PCF1 48.4 11 0.00038 37.1 3.4 22 207-228 136-157 (460)
485 2dyk_A GTP-binding protein; GT 48.3 9.1 0.00031 30.1 2.4 18 211-228 3-20 (161)
486 2ocp_A DGK, deoxyguanosine kin 48.3 8 0.00027 33.8 2.2 21 209-229 2-22 (241)
487 2owm_A Nckin3-434, related to 47.8 14 0.00047 36.4 3.9 21 206-226 132-154 (443)
488 3sop_A Neuronal-specific septi 47.2 8.6 0.00029 34.9 2.3 18 211-228 4-21 (270)
489 1p5z_B DCK, deoxycytidine kina 47.2 8.6 0.0003 34.1 2.2 21 208-228 23-43 (263)
490 1z6t_A APAF-1, apoptotic prote 46.9 34 0.0012 33.6 6.8 37 193-229 126-167 (591)
491 2wsm_A Hydrogenase expression/ 46.8 22 0.00074 29.9 4.7 21 209-229 30-50 (221)
492 3igf_A ALL4481 protein; two-do 46.8 11 0.00037 36.2 3.0 34 211-244 4-37 (374)
493 1z2a_A RAS-related protein RAB 46.7 10 0.00034 30.0 2.4 18 211-228 7-24 (168)
494 2onk_A Molybdate/tungstate ABC 46.6 12 0.00043 33.2 3.2 19 210-228 25-43 (240)
495 2ged_A SR-beta, signal recogni 46.4 9.9 0.00034 31.2 2.4 19 209-227 48-66 (193)
496 3b60_A Lipid A export ATP-bind 46.2 11 0.00037 38.0 3.0 21 208-228 368-388 (582)
497 1ky3_A GTP-binding protein YPT 46.0 10 0.00035 30.4 2.4 19 210-228 9-27 (182)
498 3fvq_A Fe(3+) IONS import ATP- 46.0 13 0.00044 35.6 3.4 21 208-228 29-49 (359)
499 3zvl_A Bifunctional polynucleo 45.9 10 0.00035 36.5 2.7 20 209-228 258-277 (416)
500 1z0j_A RAB-22, RAS-related pro 45.9 10 0.00036 30.0 2.4 18 211-228 8-25 (170)
No 1
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.9e-20 Score=205.03 Aligned_cols=135 Identities=41% Similarity=0.529 Sum_probs=120.3
Q ss_pred cccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEE
Q psy2760 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267 (333)
Q Consensus 188 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgll 267 (333)
...++|.|+++|.+|++.+..|++++++||||||||++|.+|++..+..+.+++|++||++|++|++++|++.|+.+|++
T Consensus 178 ~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgll 257 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 257 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEE
Confidence 45678899999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eCCCCCCCCcceEEecc---------------CcceEeccccccccccCcCcccccchh---hhhhheeccCc
Q psy2760 268 DDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQLD---DLFDWTMASDA 322 (333)
Q Consensus 268 tGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~l~---~l~~l~~~~d~ 322 (333)
+|+.+.+.+..++|+|+ ++.++|+||+|++.+.+|+..|...+. ..++++++|++
T Consensus 258 tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSAT 330 (1108)
T 3l9o_A 258 TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT 330 (1108)
T ss_dssp CSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECS
T ss_pred eCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCC
Confidence 99999999999999985 578999999999998888866654222 23567777776
No 2
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.81 E-value=5.4e-20 Score=199.69 Aligned_cols=162 Identities=42% Similarity=0.641 Sum_probs=141.1
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEE
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 242 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~ 242 (333)
...+|+...++..++.+|....+.....+||.|+++|.++++.+..|++++++||||||||++|.+++......+.+++|
T Consensus 8 ~~~~wa~~~~~~~~~~~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlv 87 (997)
T 4a4z_A 8 VKKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIY 87 (997)
T ss_dssp -CCCSEEECCTTCCCTTHHHHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccccchhcccccccchhhhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEE
Confidence 45688887788888888888888888899999999999999999999999999999999999999999988888999999
Q ss_pred EcccHHHHHHHHHHHHHhcC--CcEEEeCCCCCCCCcceEEecc---------------CcceEeccccccccccCcCcc
Q psy2760 243 TSPIKALSNQKYRDFRETFQ--DVGLIDDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWK 305 (333)
Q Consensus 243 l~PtraLa~Q~~~~l~~~f~--~vglltGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~ 305 (333)
++|+++|+.|++++|++.|+ .++.++|+...+.+..++++|+ ++.++|+||+|++.+..|+..
T Consensus 88 l~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~ 167 (997)
T 4a4z_A 88 TSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVV 167 (997)
T ss_dssp EESCGGGHHHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCC
T ss_pred EeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHH
Confidence 99999999999999999886 4899999999988899999986 578899999999999888888
Q ss_pred cccchhh---hhhheeccCcch
Q psy2760 306 PKVQLDD---LFDWTMASDATT 324 (333)
Q Consensus 306 ~~~~l~~---l~~l~~~~d~~~ 324 (333)
|...+.. .++++++|++.+
T Consensus 168 ~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 168 WEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp HHHHHHHSCTTCEEEEEECCCT
T ss_pred HHHHHHhcccCCCEEEEcCCCC
Confidence 7753332 366788888753
No 3
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=160.80 Aligned_cols=157 Identities=13% Similarity=-0.029 Sum_probs=114.0
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-------
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN------- 235 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~------- 235 (333)
+...|.+..++++.+...+...++. .|+++|.++++.+.+|++++++||||||||++|++|++..+.
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRVGIL------KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHHTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred ChhhHhhhhccCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 3445666567888888877766665 799999999999999999999999999999999999886442
Q ss_pred --CCCeEEEEcccHHHHHHHHHHHHHhcC---CcEEEeCCCCCCCC-------cceEEecc---------------Ccce
Q psy2760 236 --HKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLIDDLPPVFPD-------VEKLLEDL---------------NIGG 288 (333)
Q Consensus 236 --~g~ral~l~PtraLa~Q~~~~l~~~f~---~vglltGd~~~~~~-------a~ili~t~---------------~i~l 288 (333)
.+.+++|++||++|+.|+++++++... .++.++|+.....+ ..++++|+ ++.+
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 678899999999999999999988532 26777777665433 37888875 4788
Q ss_pred EeccccccccccCcCcccccchhhh----hhheeccCcchhh
Q psy2760 289 LDELSIHDFNKHLKFWKPKVQLDDL----FDWTMASDATTLE 326 (333)
Q Consensus 289 iViDe~H~~~~~~R~~~~~~~l~~l----~~l~~~~d~~~~e 326 (333)
+|+||+|.+...+++..... ++.. .+.+++|++-.-+
T Consensus 171 lViDEah~~~~~~~~~~~~~-i~~~~~~~~~~l~~SAT~~~~ 211 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRK-ILLDVRPDRQTVMTSATWPDT 211 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHH-HHHHSCSSCEEEEEESCCCHH
T ss_pred EEEECHHHHhccchHHHHHH-HHHhCCcCCeEEEEEeeCCHH
Confidence 99999998876543222221 2222 3456777764433
No 4
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.9e-20 Score=198.20 Aligned_cols=136 Identities=41% Similarity=0.524 Sum_probs=121.1
Q ss_pred cccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEE
Q psy2760 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267 (333)
Q Consensus 188 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vgll 267 (333)
...+||.|+++|.+|++.+..|++++++||||||||++|.++++..+..+.+++|++||++|++|++++|++.|+.+|++
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 56789999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred eCCCCCCCCcceEEecc---------------CcceEeccccccccccCcCcccccchh---hhhhheeccCcc
Q psy2760 268 DDLPPVFPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQLD---DLFDWTMASDAT 323 (333)
Q Consensus 268 tGd~~~~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~l~---~l~~l~~~~d~~ 323 (333)
+|+.+.+.++.++|+|+ ++.++|+||+|++.+..|+..|...+. ..++++++|++-
T Consensus 160 tGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi 233 (1010)
T 2xgj_A 160 TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI 233 (1010)
T ss_dssp CSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred eCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCC
Confidence 99999998899999986 578999999999999999987765222 235567777753
No 5
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=164.40 Aligned_cols=154 Identities=9% Similarity=0.034 Sum_probs=114.6
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcc
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSP 245 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~P 245 (333)
.+|++.+...+...++. .|+++|.++++.++.| ++++++||||||||++|++|++..+. .+.++||++|
T Consensus 97 l~l~~~l~~~l~~~g~~------~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 97 LRLKPQLLQGVYAMGFN------RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp GTCCHHHHHHHHHTTCC------SCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCCCHHHHHHHHHcCCC------CCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 35788888777666655 8999999999999887 99999999999999999999997653 3458999999
Q ss_pred cHHHHHHHHHHHHHhcC---C--cEEEeCCCCCCC----CcceEEecc----------------CcceEecccccccccc
Q psy2760 246 IKALSNQKYRDFRETFQ---D--VGLIDDLPPVFP----DVEKLLEDL----------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~---~--vglltGd~~~~~----~a~ili~t~----------------~i~liViDe~H~~~~~ 300 (333)
||+||.|+++.+++... . ++...|+..... ...++|+|+ ++.++|+||+|.+.+.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~ 250 (300)
T 3fmo_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (300)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhc
Confidence 99999999999877543 2 566777665433 236888875 4678999999987753
Q ss_pred CcCcccccchhh----hhhheeccCcchhhhhhc
Q psy2760 301 LKFWKPKVQLDD----LFDWTMASDATTLEIFTY 330 (333)
Q Consensus 301 ~R~~~~~~~l~~----l~~l~~~~d~~~~e~~~~ 330 (333)
.++......+.. ..+.+++|++-.-++...
T Consensus 251 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~ 284 (300)
T 3fmo_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKF 284 (300)
T ss_dssp TTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHH
T ss_pred cCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHH
Confidence 322222221222 245778888777666543
No 6
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=160.52 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=116.8
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCC
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKT 238 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ 238 (333)
++.++....++++.+...+...|+. .|+++|.++++.+..|++++++||||||||++|.+|++..+. .+.
T Consensus 26 ~f~~l~~~~~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 99 (245)
T 3dkp_A 26 TFQQLDQEYKINSRLLQNILDAGFQ------MPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 99 (245)
T ss_dssp SHHHHHHHHCCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC
T ss_pred CHHHhhhccCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc
Confidence 5666655568888888877666655 799999999999999999999999999999999999986653 567
Q ss_pred eEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCC--------CCCCcceEEecc-----------------CcceE
Q psy2760 239 RTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPP--------VFPDVEKLLEDL-----------------NIGGL 289 (333)
Q Consensus 239 ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~--------~~~~a~ili~t~-----------------~i~li 289 (333)
+++|++||++|+.|+++++++.+.. ++.++|+.. ......++++|+ ++.++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~l 179 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWL 179 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEE
Confidence 8999999999999999999887654 333443321 122346888874 46779
Q ss_pred eccccccccccC-cCcccccc-hh-----hhhhheeccCcchhhhh
Q psy2760 290 DELSIHDFNKHL-KFWKPKVQ-LD-----DLFDWTMASDATTLEIF 328 (333)
Q Consensus 290 ViDe~H~~~~~~-R~~~~~~~-l~-----~l~~l~~~~d~~~~e~~ 328 (333)
|+||+|.+.+.+ +++..... ++ ...+.+++|++-.-++.
T Consensus 180 ViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 180 VVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE 225 (245)
T ss_dssp EESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred EEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHH
Confidence 999999987654 34433221 11 12456777777554443
No 7
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=164.99 Aligned_cols=157 Identities=16% Similarity=0.078 Sum_probs=114.9
Q ss_pred CcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-------c
Q psy2760 163 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------N 235 (333)
Q Consensus 163 ~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-------~ 235 (333)
.|..|.. .+++.+...++..|+. .|+++|.++++.+..|++++++||||||||++|.+|++..+ .
T Consensus 53 ~f~~l~~--~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 124 (262)
T 3ly5_A 53 SFASLCN--LVNENTLKAIKEMGFT------NMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 124 (262)
T ss_dssp CC-------CCCHHHHHHHHHTTCC------BCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred ChhHhcc--ccCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccccc
Confidence 4555543 4677777777665554 79999999999999999999999999999999999998544 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCCC-------CcceEEecc----------------Ccce
Q psy2760 236 HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVFP-------DVEKLLEDL----------------NIGG 288 (333)
Q Consensus 236 ~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~~-------~a~ili~t~----------------~i~l 288 (333)
.+.+++|++|||+|+.|+++.+++.+.. ++.++|+..... ...++|+|+ ++.+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 5788999999999999999999887653 678888876432 246888874 4788
Q ss_pred EeccccccccccCcCcccccchhh----hhhheeccCcchhhhh
Q psy2760 289 LDELSIHDFNKHLKFWKPKVQLDD----LFDWTMASDATTLEIF 328 (333)
Q Consensus 289 iViDe~H~~~~~~R~~~~~~~l~~----l~~l~~~~d~~~~e~~ 328 (333)
+|+||+|.+.+.+++-.... +.. ..+.+++|++..-++.
T Consensus 205 lViDEah~l~~~~~~~~l~~-i~~~~~~~~q~l~~SAT~~~~v~ 247 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQ-IIKLLPTRRQTMLFSATQTRKVE 247 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHH-HHHHSCSSSEEEEECSSCCHHHH
T ss_pred EEEcChHHHhhhhHHHHHHH-HHHhCCCCCeEEEEEecCCHHHH
Confidence 99999998876542222111 222 2346777877665543
No 8
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=1.7e-18 Score=152.37 Aligned_cols=151 Identities=9% Similarity=-0.055 Sum_probs=113.4
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+...+...|+. .|+++|.++++.+..|+++++++|||||||++|.++++..+. .+.+++|++||++
T Consensus 9 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 9 CLKRELLMGIFEMGWE------KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp CCCHHHHHHHHTTTCC------SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 4677777777655554 799999999999999999999999999999999999986653 4568999999999
Q ss_pred HHHHHHHHHHHhcC---C--cEEEeCCCCCC-------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 249 LSNQKYRDFRETFQ---D--VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 249 La~Q~~~~l~~~f~---~--vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
|+.|+++.+++.+. + ++.++|+.... ....++++|+ ++.++|+||+|.+.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 99999999987653 2 67788876532 3456888876 56889999999876643
Q ss_pred cCcccccchhh----hhhheeccCcchhhhhh
Q psy2760 302 KFWKPKVQLDD----LFDWTMASDATTLEIFT 329 (333)
Q Consensus 302 R~~~~~~~l~~----l~~l~~~~d~~~~e~~~ 329 (333)
.+..... +.. ..+.+++|++..-++..
T Consensus 163 ~~~~l~~-i~~~~~~~~~~l~~SAT~~~~~~~ 193 (206)
T 1vec_A 163 FVQIMED-IILTLPKNRQILLYSATFPLSVQK 193 (206)
T ss_dssp THHHHHH-HHHHSCTTCEEEEEESCCCHHHHH
T ss_pred cHHHHHH-HHHhCCccceEEEEEeeCCHHHHH
Confidence 2211111 222 24567778777655543
No 9
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.77 E-value=2.7e-18 Score=156.61 Aligned_cols=150 Identities=13% Similarity=-0.013 Sum_probs=109.9
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc------------CCCe
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN------------HKTR 239 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~------------~g~r 239 (333)
++++.+.+.+...++. .|+++|.++++.+..|+++++++|||||||++|+++++..+. .+.+
T Consensus 29 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 29 KLDPTIRNNILLASYQ------RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp SCCCSTTTTTTTTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 4566666655544444 799999999999999999999999999999999999986542 2468
Q ss_pred EEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEeccc
Q psy2760 240 TIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELS 293 (333)
Q Consensus 240 al~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe 293 (333)
+||++|||+|+.|+++++++.... ++.+.|+.... ....++++|+ ++.++|+||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 999999999999999999875542 57778876543 2346888876 356899999
Q ss_pred cccccccCcCcccccchhh--------hhhheeccCcchhhhh
Q psy2760 294 IHDFNKHLKFWKPKVQLDD--------LFDWTMASDATTLEIF 328 (333)
Q Consensus 294 ~H~~~~~~R~~~~~~~l~~--------l~~l~~~~d~~~~e~~ 328 (333)
+|.+.+.+++-.... ++. ..+.+++|++..-++.
T Consensus 183 ah~~~~~~~~~~~~~-i~~~~~~~~~~~~q~l~~SAT~~~~~~ 224 (253)
T 1wrb_A 183 ADRMLDMGFEPQIRK-IIEESNMPSGINRQTLMFSATFPKEIQ 224 (253)
T ss_dssp HHHHHHTTCHHHHHH-HHHSSCCCCGGGCEEEEEESSCCHHHH
T ss_pred HHHHHhCchHHHHHH-HHhhccCCCCCCcEEEEEEEeCCHHHH
Confidence 998765543222111 222 2346777777665543
No 10
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.77 E-value=5.2e-19 Score=160.79 Aligned_cols=149 Identities=17% Similarity=0.016 Sum_probs=110.7
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--------CCCeEEEE
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--------HKTRTIYT 243 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~--------~g~ral~l 243 (333)
++++.+.+.+...++. .|+++|.++++.+..|++++++||||||||++|++|++..+. .+.+++|+
T Consensus 35 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil 108 (242)
T 3fe2_A 35 NFPANVMDVIARQNFT------EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108 (242)
T ss_dssp TCCHHHHHHHHTTTCC------SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEE
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEE
Confidence 5677777776665544 699999999999999999999999999999999999986543 46789999
Q ss_pred cccHHHHHHHHHHHHHhcC----CcEEEeCCCCCCC-------CcceEEecc---------------CcceEeccccccc
Q psy2760 244 SPIKALSNQKYRDFRETFQ----DVGLIDDLPPVFP-------DVEKLLEDL---------------NIGGLDELSIHDF 297 (333)
Q Consensus 244 ~PtraLa~Q~~~~l~~~f~----~vglltGd~~~~~-------~a~ili~t~---------------~i~liViDe~H~~ 297 (333)
+|||+|+.|+++.+++... .++.++|+..... ...++++|+ ++.++|+||+|.+
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM 188 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH
Confidence 9999999999998877543 2677888866432 246888876 5678999999988
Q ss_pred cccCcCcccccchhh----hhhheeccCcchhhh
Q psy2760 298 NKHLKFWKPKVQLDD----LFDWTMASDATTLEI 327 (333)
Q Consensus 298 ~~~~R~~~~~~~l~~----l~~l~~~~d~~~~e~ 327 (333)
.+.+++-.... +++ ..+.+++|++-.-++
T Consensus 189 ~~~~~~~~~~~-i~~~~~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 189 LDMGFEPQIRK-IVDQIRPDRQTLMWSATWPKEV 221 (242)
T ss_dssp HHTTCHHHHHH-HHTTSCSSCEEEEEESCCCHHH
T ss_pred hhhCcHHHHHH-HHHhCCccceEEEEEeecCHHH
Confidence 76542221111 121 234677777654443
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=155.13 Aligned_cols=149 Identities=17% Similarity=0.057 Sum_probs=110.3
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-------cCCCeEEEEc
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NHKTRTIYTS 244 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-------~~g~ral~l~ 244 (333)
++++.+...++..++. .|+++|.++++.+..|+++++++|||||||++|.++++..+ ..+.+++|++
T Consensus 31 ~l~~~l~~~l~~~~~~------~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 31 PLSKKTLKGLQEAQYR------LVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp CCCHHHHHHHHHTTCC------BCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 4777777777665555 79999999999999999999999999999999999988553 3578999999
Q ss_pred ccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC------CCcceEEecc----------------CcceEecccccccc
Q psy2760 245 PIKALSNQKYRDFRETFQD----VGLIDDLPPVF------PDVEKLLEDL----------------NIGGLDELSIHDFN 298 (333)
Q Consensus 245 PtraLa~Q~~~~l~~~f~~----vglltGd~~~~------~~a~ili~t~----------------~i~liViDe~H~~~ 298 (333)
||++|+.|+++.+++.+.. ++.++|+.... ....++++|+ ++.++|+||+|.+.
T Consensus 105 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 105 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHh
Confidence 9999999999999886542 67788876543 2346888875 45689999999876
Q ss_pred ccCcCcccccchhh----hhhheeccCcchhhh
Q psy2760 299 KHLKFWKPKVQLDD----LFDWTMASDATTLEI 327 (333)
Q Consensus 299 ~~~R~~~~~~~l~~----l~~l~~~~d~~~~e~ 327 (333)
+.+.+..... ++. ..+.+++|++.+-++
T Consensus 185 ~~~~~~~~~~-i~~~~~~~~~~l~~SAT~~~~~ 216 (236)
T 2pl3_A 185 DMGFADTMNA-VIENLPKKRQTLLFSATQTKSV 216 (236)
T ss_dssp HTTTHHHHHH-HHHTSCTTSEEEEEESSCCHHH
T ss_pred cCCcHHHHHH-HHHhCCCCCeEEEEEeeCCHHH
Confidence 5542222111 222 233677777654443
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.76 E-value=2.6e-18 Score=153.32 Aligned_cols=150 Identities=13% Similarity=0.018 Sum_probs=108.8
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~Ptra 248 (333)
++++.+...+...++. .|+++|.++++.+..|+++++++|||||||++|.++++..+ ..+.+++|++||++
T Consensus 20 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 20 ELDENLLRGVFGYGFE------EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 93 (224)
T ss_dssp TCCHHHHHHHHHHTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCC------CCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHH
Confidence 4777777776665554 79999999999999999999999999999999999998765 34678999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCCCC------CcceEEecc---------------CcceEeccccccccccCcC
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPVFP------DVEKLLEDL---------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~~~------~a~ili~t~---------------~i~liViDe~H~~~~~~R~ 303 (333)
|+.|+++.+++.+.. ++.++|+..... ...++++|+ ++.++|+||+|.+.+.+.+
T Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 173 (224)
T 1qde_A 94 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 173 (224)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhH
Confidence 999999999886542 677777765432 246888875 3688999999987654322
Q ss_pred cccccchhh----hhhheeccCcchhhhh
Q psy2760 304 WKPKVQLDD----LFDWTMASDATTLEIF 328 (333)
Q Consensus 304 ~~~~~~l~~----l~~l~~~~d~~~~e~~ 328 (333)
-.... +.. ..+.+++|++..-++.
T Consensus 174 ~~l~~-i~~~~~~~~~~i~lSAT~~~~~~ 201 (224)
T 1qde_A 174 EQIYQ-IFTLLPPTTQVVLLSATMPNDVL 201 (224)
T ss_dssp HHHHH-HHHHSCTTCEEEEEESSCCHHHH
T ss_pred HHHHH-HHHhCCccCeEEEEEeecCHHHH
Confidence 11111 222 2336777777665543
No 13
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=3.5e-18 Score=154.15 Aligned_cols=150 Identities=13% Similarity=-0.011 Sum_probs=112.0
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~Ptra 248 (333)
++++.+.+.++..++. .|+++|.++++.+..|+++++++|||||||++|.++++..+ ..+.+++|++||++
T Consensus 30 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 30 LLSRPVLEGLRAAGFE------RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 103 (230)
T ss_dssp TCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 5777788777665544 69999999999999999999999999999999999998665 34579999999999
Q ss_pred HHHHHHHHHHHhcC---C--cEEEeCCCCCC------CCcceEEecc---------------CcceEeccccccccccCc
Q psy2760 249 LSNQKYRDFRETFQ---D--VGLIDDLPPVF------PDVEKLLEDL---------------NIGGLDELSIHDFNKHLK 302 (333)
Q Consensus 249 La~Q~~~~l~~~f~---~--vglltGd~~~~------~~a~ili~t~---------------~i~liViDe~H~~~~~~R 302 (333)
|+.|+++++++... + ++.++|+.... ....++++|+ ++.++|+||+|.+...+.
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 183 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS 183 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc
Confidence 99999999987543 2 67888886532 2356888876 356899999999865531
Q ss_pred Ccccc-cchhh----hhhheeccCcchhhhh
Q psy2760 303 FWKPK-VQLDD----LFDWTMASDATTLEIF 328 (333)
Q Consensus 303 ~~~~~-~~l~~----l~~l~~~~d~~~~e~~ 328 (333)
+... ..+.. ..+.+++|++..-++.
T Consensus 184 -~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~ 213 (230)
T 2oxc_A 184 -FQEQINWIYSSLPASKQMLAVSATYPEFLA 213 (230)
T ss_dssp -SHHHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred -hHHHHHHHHHhCCCCCeEEEEEeccCHHHH
Confidence 2211 11222 2346777777655543
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.76 E-value=3.2e-18 Score=150.46 Aligned_cols=149 Identities=13% Similarity=-0.018 Sum_probs=112.7
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEcc
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSP 245 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~P 245 (333)
++++.+...++..++. .|+++|.++++.+.+|+++++++|||||||++|.++++..+. .+.+++|++|
T Consensus 7 ~l~~~l~~~l~~~~~~------~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 7 PLKPEILEALHGRGLT------TPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 5777777777665555 799999999999999999999999999999999999987653 5678999999
Q ss_pred cHHHHHHHHHHHHHhcCC--cEEEeCCCCCC-------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 246 IKALSNQKYRDFRETFQD--VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~~--vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
|++|+.|+++.+++.++. ++.++|+.... ....++++|+ ++.++|+||+|.+.+.+
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 160 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG 160 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc
Confidence 999999999999887654 67788876542 2346888875 46889999999876543
Q ss_pred cCcccccchhh----hhhheeccCcchhhh
Q psy2760 302 KFWKPKVQLDD----LFDWTMASDATTLEI 327 (333)
Q Consensus 302 R~~~~~~~l~~----l~~l~~~~d~~~~e~ 327 (333)
.+..... +.. ..+.+++|++..-++
T Consensus 161 ~~~~~~~-i~~~~~~~~~~i~~SAT~~~~~ 189 (207)
T 2gxq_A 161 FEEEVEA-LLSATPPSRQTLLFSATLPSWA 189 (207)
T ss_dssp CHHHHHH-HHHTSCTTSEEEEECSSCCHHH
T ss_pred hHHHHHH-HHHhCCccCeEEEEEEecCHHH
Confidence 2211111 111 234677777765443
No 15
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=2.8e-18 Score=194.58 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHhc-----------CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 194 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQN-----------HKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 194 ~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l~-----------~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
.|+++|.++++.+ .+++|++++||||||||++|+++|+..+. .+.++||++|+||||+|+++.|+++|
T Consensus 79 ~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp BCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 7999999999986 67899999999999999999999996652 36789999999999999999999988
Q ss_pred CC----cEEEeCCCCCCCC----cceEEecc-----------------CcceEeccccccccccCcCcccccch
Q psy2760 262 QD----VGLIDDLPPVFPD----VEKLLEDL-----------------NIGGLDELSIHDFNKHLKFWKPKVQL 310 (333)
Q Consensus 262 ~~----vglltGd~~~~~~----a~ili~t~-----------------~i~liViDe~H~~~~~~R~~~~~~~l 310 (333)
+. |+.+|||.+...+ .+++|+|+ ++.++|+||+|++++ .||..++..+
T Consensus 159 ~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 159 ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp TTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred hhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 74 7889999887643 57899885 478999999999987 6998776533
No 16
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.75 E-value=2.6e-18 Score=153.45 Aligned_cols=150 Identities=9% Similarity=-0.026 Sum_probs=111.7
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+.+.++..++. .|+++|.++++.+..|+++++++|||||||++|.++++..+. .+.+++|++||++
T Consensus 10 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 10 PFQPFIIEAIKTLRFY------KPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 5777788777665555 799999999999999999999999999999999999987654 4678999999999
Q ss_pred HHHHHHHHHHHhcC--------CcEEEeCCCCCC-------CCcceEEecc---------------CcceEecccccccc
Q psy2760 249 LSNQKYRDFRETFQ--------DVGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFN 298 (333)
Q Consensus 249 La~Q~~~~l~~~f~--------~vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~ 298 (333)
|+.|+++.+++... .++.+.|+.... ....++++|+ ++.++|+||+|.+.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 99999999887643 256677775422 2346888875 46789999999987
Q ss_pred ccCcCcccccchhh----hhhheeccCcchhhhh
Q psy2760 299 KHLKFWKPKVQLDD----LFDWTMASDATTLEIF 328 (333)
Q Consensus 299 ~~~R~~~~~~~l~~----l~~l~~~~d~~~~e~~ 328 (333)
+.+....... +.. ..+.+++|++..-++.
T Consensus 164 ~~~~~~~l~~-i~~~~~~~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 164 DMGFITDVDQ-IAARMPKDLQMLVFSATIPEKLK 196 (219)
T ss_dssp HTTCHHHHHH-HHHTSCTTCEEEEEESCCCGGGH
T ss_pred hhChHHHHHH-HHHhCCcccEEEEEecCCCHHHH
Confidence 6542211111 221 2346777777655543
No 17
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.75 E-value=2.5e-18 Score=156.05 Aligned_cols=150 Identities=12% Similarity=0.016 Sum_probs=107.6
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+...+...++. .|+++|.++++.+..|+++++++|||||||++|.++++..+. .+.+++|++||++
T Consensus 36 ~l~~~l~~~l~~~g~~------~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 109 (237)
T 3bor_A 36 NLKESLLRGIYAYGFE------KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRE 109 (237)
T ss_dssp CCCHHHHHHHHHHTCC------SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHH
Confidence 4677777766555544 699999999999999999999999999999999999987654 4679999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCCCCC--------cceEEecc---------------CcceEeccccccccccC
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPVFPD--------VEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~~~~--------a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
|+.|+++.+++.... ++.+.|+.....+ ..++++|+ .+.++|+||+|.+.+.+
T Consensus 110 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 189 (237)
T 3bor_A 110 LAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG 189 (237)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC
Confidence 999999999886542 5667776554321 46888874 46889999999876543
Q ss_pred cCcccccchhh----hhhheeccCcchhhhh
Q psy2760 302 KFWKPKVQLDD----LFDWTMASDATTLEIF 328 (333)
Q Consensus 302 R~~~~~~~l~~----l~~l~~~~d~~~~e~~ 328 (333)
.+-.. ..+.+ ..+.+++|++..-++.
T Consensus 190 ~~~~l-~~i~~~~~~~~~~i~~SAT~~~~~~ 219 (237)
T 3bor_A 190 FKDQI-YEIFQKLNTSIQVVLLSATMPTDVL 219 (237)
T ss_dssp CHHHH-HHHHHHSCTTCEEEEECSSCCHHHH
T ss_pred cHHHH-HHHHHhCCCCCeEEEEEEecCHHHH
Confidence 21111 11221 2346777777655443
No 18
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=8.7e-18 Score=149.73 Aligned_cols=150 Identities=12% Similarity=0.022 Sum_probs=109.8
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~Ptra 248 (333)
++++.+...+...++. .|+++|.++++.+.+|+++++++|||+|||++|.++++..+.. +.+++|++||++
T Consensus 20 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFE------HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCCHHHHHHHHHTTCC------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 5677777766654444 6999999999999999999999999999999999999876543 458999999999
Q ss_pred HHHHHHHHHHHhcC-----CcEEEeCCCCCC--------CCcceEEecc---------------CcceEecccccccccc
Q psy2760 249 LSNQKYRDFRETFQ-----DVGLIDDLPPVF--------PDVEKLLEDL---------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 249 La~Q~~~~l~~~f~-----~vglltGd~~~~--------~~a~ili~t~---------------~i~liViDe~H~~~~~ 300 (333)
|+.|+++.+++... .++.++|+.... ....++++|+ ++.++|+||+|.+...
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 99999999987542 278888886532 1236888875 4678999999988542
Q ss_pred CcCcccccchhh----hhhheeccCcchhhh
Q psy2760 301 LKFWKPKVQLDD----LFDWTMASDATTLEI 327 (333)
Q Consensus 301 ~R~~~~~~~l~~----l~~l~~~~d~~~~e~ 327 (333)
...+.....+.+ ..+.+++|++..-++
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 204 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTT
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHH
Confidence 111111111211 234677777765544
No 19
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=152.85 Aligned_cols=150 Identities=12% Similarity=-0.032 Sum_probs=110.8
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh---cCCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l---~~g~ral~l~Ptra 248 (333)
++++.+...++..++. .|+++|.++++.+..|+++++++|||||||++|.++++..+ ..+.+++|++|||+
T Consensus 49 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 49 GVTDVLCEACDQLGWT------KPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp TCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHH
Confidence 5677777777665554 79999999999999999999999999999999999998554 23567999999999
Q ss_pred HHHHHHHHHHHhcC----CcEEEeCCCCCC-------CCcceEEecc----------------CcceEeccccccccccC
Q psy2760 249 LSNQKYRDFRETFQ----DVGLIDDLPPVF-------PDVEKLLEDL----------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 249 La~Q~~~~l~~~f~----~vglltGd~~~~-------~~a~ili~t~----------------~i~liViDe~H~~~~~~ 301 (333)
|+.|+++++++... .++.+.|+.... ....++++|+ ++.++|+||+|.+.+.+
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 202 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD 202 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC
Confidence 99999999977543 267788876532 2346888875 36789999999876553
Q ss_pred cCcccccchh----hhhhheeccCcchhhhh
Q psy2760 302 KFWKPKVQLD----DLFDWTMASDATTLEIF 328 (333)
Q Consensus 302 R~~~~~~~l~----~l~~l~~~~d~~~~e~~ 328 (333)
.+-.... ++ ...+.+++|++-.-++.
T Consensus 203 ~~~~l~~-i~~~~~~~~~~l~~SAT~~~~v~ 232 (249)
T 3ber_A 203 FETEVDK-ILKVIPRDRKTFLFSATMTKKVQ 232 (249)
T ss_dssp CHHHHHH-HHHSSCSSSEEEEEESSCCHHHH
T ss_pred hHHHHHH-HHHhCCCCCeEEEEeccCCHHHH
Confidence 2211111 11 12446777777655543
No 20
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.72 E-value=1.8e-17 Score=163.50 Aligned_cols=154 Identities=14% Similarity=0.061 Sum_probs=114.6
Q ss_pred cchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc--------CC
Q psy2760 166 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--------HK 237 (333)
Q Consensus 166 ~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~--------~g 237 (333)
.|.. .+|++.+...++..++. .|+++|+++++.+.+|++++++||||||||++|++|++..+. .+
T Consensus 57 ~f~~-~~l~~~l~~~l~~~g~~------~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 129 (434)
T 2db3_A 57 HFTS-ADLRDIIIDNVNKSGYK------IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR 129 (434)
T ss_dssp CGGG-SCCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTC
T ss_pred Chhh-cCCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCC
Confidence 3443 36788888877666655 799999999999999999999999999999999999985542 25
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEec
Q psy2760 238 TRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDE 291 (333)
Q Consensus 238 ~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liVi 291 (333)
.++||++|||+|+.|+++++++.... ++.++|+.... ....++++|+ ++.++|+
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 68999999999999999999875532 67888887642 2357888876 4678999
Q ss_pred cccccccccCcCcccccchh------hhhhheeccCcchhhh
Q psy2760 292 LSIHDFNKHLKFWKPKVQLD------DLFDWTMASDATTLEI 327 (333)
Q Consensus 292 De~H~~~~~~R~~~~~~~l~------~l~~l~~~~d~~~~e~ 327 (333)
||+|.+.+.+..-.... ++ ...+.+++|++..-++
T Consensus 210 DEah~~~~~gf~~~~~~-i~~~~~~~~~~q~l~~SAT~~~~~ 250 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRR-IMTHVTMRPEHQTLMFSATFPEEI 250 (434)
T ss_dssp ETHHHHTSTTTHHHHHH-HHHCTTSCSSCEEEEEESCCCHHH
T ss_pred ccHhhhhccCcHHHHHH-HHHhcCCCCCceEEEEeccCCHHH
Confidence 99998876542111111 11 1234677777755443
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.71 E-value=6.2e-18 Score=176.31 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=116.1
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
|++.+.++++..|+. .|+++|.++++.+.++++++++||||||||+++.++++..+..+.+++|++|+|+|+.|
T Consensus 10 l~~~~~~~l~~~g~~------~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q 83 (702)
T 2p6r_A 10 ISSYAVGILKEEGIE------ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGE 83 (702)
T ss_dssp HHHHHHHHHHCC---------CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHH
T ss_pred cCHHHHHHHHhCCCC------CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHH
Confidence 567777777665544 79999999999999999999999999999999999999777778999999999999999
Q ss_pred HHHHHHHhcC----CcEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCcccccc
Q psy2760 253 KYRDFRETFQ----DVGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKVQ 309 (333)
Q Consensus 253 ~~~~l~~~f~----~vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~~ 309 (333)
++++++ .+. .++.++|+..... ...++++|+ ++.++|+||+|.+.+..|+..+...
T Consensus 84 ~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (702)
T 2p6r_A 84 KYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (702)
T ss_dssp HHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHH
Confidence 999994 443 3788999876654 467888885 5689999999999988888766542
Q ss_pred hhh------hhhheeccCcch
Q psy2760 310 LDD------LFDWTMASDATT 324 (333)
Q Consensus 310 l~~------l~~l~~~~d~~~ 324 (333)
+.. .++++++|++..
T Consensus 163 l~~l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 163 VTKMRRMNKALRVIGLSATAP 183 (702)
T ss_dssp HHHHHHHCTTCEEEEEECCCT
T ss_pred HHHHHhcCcCceEEEECCCcC
Confidence 222 255777777643
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=161.84 Aligned_cols=154 Identities=9% Similarity=0.030 Sum_probs=113.5
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEcc
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSP 245 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~P 245 (333)
.+|++.+...+...++. .|+++|.++++.+..+ ++++++||||||||++|++|++..+.. +.++||++|
T Consensus 97 ~~l~~~l~~~l~~~g~~------~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 97 LRLKPQLLQGVYAMGFN------RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp GTCCHHHHHHHHHTTCC------SCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCCHHHHHHHHHcCCC------CCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 35777777766665555 7999999999999876 999999999999999999999866543 348999999
Q ss_pred cHHHHHHHHHHHHHhcC---C--cEEEeCCCCCCC----CcceEEecc----------------CcceEecccccccccc
Q psy2760 246 IKALSNQKYRDFRETFQ---D--VGLIDDLPPVFP----DVEKLLEDL----------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~---~--vglltGd~~~~~----~a~ili~t~----------------~i~liViDe~H~~~~~ 300 (333)
|++|+.|+++.+++... . ++...|+..... ...++|+|+ ++.++|+||+|.+...
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhc
Confidence 99999999888766432 2 566666554332 236888875 5678999999987654
Q ss_pred CcCcccccchh----hhhhheeccCcchhhhhhc
Q psy2760 301 LKFWKPKVQLD----DLFDWTMASDATTLEIFTY 330 (333)
Q Consensus 301 ~R~~~~~~~l~----~l~~l~~~~d~~~~e~~~~ 330 (333)
.+.......+. ...+.+++|++.+-+++..
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 284 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKF 284 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHH
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHH
Confidence 33322222222 2356888999888877653
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.71 E-value=2e-17 Score=172.57 Aligned_cols=145 Identities=22% Similarity=0.246 Sum_probs=117.1
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKAL 249 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraL 249 (333)
+|++.+.++++..|+. .|+++|.++++. +..+++++++||||||||+++.++++..+. .+.+++|++|+|+|
T Consensus 14 ~l~~~~~~~l~~~g~~------~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 14 KLPSNVIEIIKKRGIK------KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp SSCHHHHHHHHTTSCC------BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred CCCHHHHHHHHhCCCC------CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 4778888877665554 799999999999 788999999999999999999999986654 78899999999999
Q ss_pred HHHHHHHHHHhcC----CcEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCccc
Q psy2760 250 SNQKYRDFRETFQ----DVGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKP 306 (333)
Q Consensus 250 a~Q~~~~l~~~f~----~vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~ 306 (333)
+.|++++++ .+. .++.++|+..... ...++++|+ ++.++|+||+|.+.+..|+..+
T Consensus 88 a~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l 166 (715)
T 2va8_A 88 TNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVV 166 (715)
T ss_dssp HHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHH
T ss_pred HHHHHHHHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHH
Confidence 999999994 343 3788999876654 457888876 5689999999999887887655
Q ss_pred ccchhh--hhhheeccCcc
Q psy2760 307 KVQLDD--LFDWTMASDAT 323 (333)
Q Consensus 307 ~~~l~~--l~~l~~~~d~~ 323 (333)
...+.+ ..+++.+|++.
T Consensus 167 ~~i~~~~~~~~ii~lSATl 185 (715)
T 2va8_A 167 ESVTIRAKRRNLLALSATI 185 (715)
T ss_dssp HHHHHHHHTSEEEEEESCC
T ss_pred HHHHHhcccCcEEEEcCCC
Confidence 542222 36678888775
No 24
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.71 E-value=1.9e-17 Score=167.20 Aligned_cols=160 Identities=12% Similarity=-0.003 Sum_probs=118.7
Q ss_pred CCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHHHHHHHhcC--
Q psy2760 161 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQNH-- 236 (333)
Q Consensus 161 ~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l~il~~l~~-- 236 (333)
..++..|.....|++.+...+...++. .|+++|.++++.++ .+++++++||||||||++|++|++..+..
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~ 140 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFP------GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 140 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCS------SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc
Confidence 346777777767889988877666655 79999999999987 67899999999999999999999865532
Q ss_pred -----CCeEEEEcccHHHHHHHHHHHHHhcC--------CcEEEeCCCCCC--------CCcceEEecc-----------
Q psy2760 237 -----KTRTIYTSPIKALSNQKYRDFRETFQ--------DVGLIDDLPPVF--------PDVEKLLEDL----------- 284 (333)
Q Consensus 237 -----g~ral~l~PtraLa~Q~~~~l~~~f~--------~vglltGd~~~~--------~~a~ili~t~----------- 284 (333)
+.++||++||++|+.|+++++++.+. .+..+.|+.... ....++|+|+
T Consensus 141 ~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~ 220 (563)
T 3i5x_A 141 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS 220 (563)
T ss_dssp TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH
T ss_pred ccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc
Confidence 35899999999999999999987432 156677775532 2357888876
Q ss_pred -----CcceEeccccccccccCcCcccccchhh-----------hhhheeccCcchhhh
Q psy2760 285 -----NIGGLDELSIHDFNKHLKFWKPKVQLDD-----------LFDWTMASDATTLEI 327 (333)
Q Consensus 285 -----~i~liViDe~H~~~~~~R~~~~~~~l~~-----------l~~l~~~~d~~~~e~ 327 (333)
.+.++|+||+|.+...+++-.... +.. .++.+++|++..-++
T Consensus 221 ~~~~~~~~~lViDEah~l~~~~f~~~~~~-i~~~l~~~~~~~~~~~~~l~~SAT~~~~v 278 (563)
T 3i5x_A 221 NKFFRFVDYKVLDEADRLLEIGFRDDLET-ISGILNEKNSKSADNIKTLLFSATLDDKV 278 (563)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHH-HHHHHHHHCSSCTTCCEEEEEESSCCTHH
T ss_pred ccccccceEEEEeCHHHHhccchHHHHHH-HHHhhhhccccCccCceEEEEEccCCHHH
Confidence 478899999999876653322221 111 124677777766443
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.71 E-value=1.1e-17 Score=174.85 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=117.3
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKAL 249 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraL 249 (333)
+|++.+.++++..|+. .|+++|.++++. +..+++++++||||||||++|.++++..+. .+.+++|++|+|+|
T Consensus 7 ~l~~~~~~~l~~~g~~------~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 7 RVDERIKSTLKERGIE------SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp CSCHHHHHHHHHTTCC------BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 4777888877665554 799999999998 789999999999999999999999986553 68899999999999
Q ss_pred HHHHHHHHHHh--cC-CcEEEeCCCCCCC----CcceEEecc---------------CcceEeccccccccccCcCcccc
Q psy2760 250 SNQKYRDFRET--FQ-DVGLIDDLPPVFP----DVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPK 307 (333)
Q Consensus 250 a~Q~~~~l~~~--f~-~vglltGd~~~~~----~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~ 307 (333)
+.|++++|++. ++ .++.++|+..... ...++++|+ ++.++|+||+|.+.+..|+..+.
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~ 160 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLE 160 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHH
Confidence 99999999532 22 3899999877654 457888876 46899999999999888887766
Q ss_pred cchhhh---hhheeccCcc
Q psy2760 308 VQLDDL---FDWTMASDAT 323 (333)
Q Consensus 308 ~~l~~l---~~l~~~~d~~ 323 (333)
..+..+ .+++++|++-
T Consensus 161 ~ll~~l~~~~~ii~lSATl 179 (720)
T 2zj8_A 161 VILAHMLGKAQIIGLSATI 179 (720)
T ss_dssp HHHHHHBTTBEEEEEECCC
T ss_pred HHHHHhhcCCeEEEEcCCc
Confidence 523222 5677777763
No 26
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=1.1e-17 Score=189.65 Aligned_cols=114 Identities=28% Similarity=0.325 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCC-----cE
Q psy2760 194 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD-----VG 265 (333)
Q Consensus 194 ~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~-----vg 265 (333)
.|+|+|.++|+.+ ..++|++++||||||||++|.+||+..+ .++.+++|++||||||+|++++|+++|+. |+
T Consensus 926 ~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~ 1005 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVV 1005 (1724)
T ss_dssp BCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEE
Confidence 4999999999997 5678999999999999999999999766 35779999999999999999999988864 78
Q ss_pred EEeCCCCCC----CCcceEEecc-----------------CcceEeccccccccccCcCccccc
Q psy2760 266 LIDDLPPVF----PDVEKLLEDL-----------------NIGGLDELSIHDFNKHLKFWKPKV 308 (333)
Q Consensus 266 lltGd~~~~----~~a~ili~t~-----------------~i~liViDe~H~~~~~~R~~~~~~ 308 (333)
.++|+...+ ..+.++|+|+ ++.++|+||+|++++ .||..+..
T Consensus 1006 ~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~ 1068 (1724)
T 4f92_B 1006 LLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEV 1068 (1724)
T ss_dssp ECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHH
T ss_pred EEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHH
Confidence 899987654 3467999986 589999999999987 47766654
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.70 E-value=8.8e-17 Score=154.20 Aligned_cols=152 Identities=9% Similarity=0.023 Sum_probs=112.2
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcc
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSP 245 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~P 245 (333)
.++++.+.+.+...++. .|+++|.++++.+..+ +++++++|||||||++|+++++..+. .+.+++|++|
T Consensus 30 ~~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 103 (412)
T 3fht_A 30 LRLKPQLLQGVYAMGFN------RPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 103 (412)
T ss_dssp GTCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECC
Confidence 35777888777666655 7999999999999876 99999999999999999999987654 3458999999
Q ss_pred cHHHHHHHHHHHHHhcC---C--cEEEeCCCCCCC----CcceEEecc----------------CcceEecccccccccc
Q psy2760 246 IKALSNQKYRDFRETFQ---D--VGLIDDLPPVFP----DVEKLLEDL----------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~---~--vglltGd~~~~~----~a~ili~t~----------------~i~liViDe~H~~~~~ 300 (333)
|++|+.|+++.+++... . ++...|+..... ...++++|+ ++.++|+||+|.+...
T Consensus 104 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~ 183 (412)
T 3fht_A 104 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 183 (412)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHST
T ss_pred CHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhc
Confidence 99999999988877543 2 566776655433 246888875 4778999999988654
Q ss_pred CcCcccccchhh----hhhheeccCcchhhhh
Q psy2760 301 LKFWKPKVQLDD----LFDWTMASDATTLEIF 328 (333)
Q Consensus 301 ~R~~~~~~~l~~----l~~l~~~~d~~~~e~~ 328 (333)
.+.......+.. ..+.+++|++..-+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 215 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW 215 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHH
Confidence 333332222222 2457778887665544
No 28
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=158.16 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=100.4
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----------------
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---------------- 235 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---------------- 235 (333)
++++.+.+.+...++. .|+++|.++++.+..|++++++||||||||++|.+|++..+.
T Consensus 21 ~l~~~l~~~l~~~~~~------~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYT------RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp CCCHHHHHHHHHHTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 5778888877666655 799999999999999999999999999999999999885431
Q ss_pred -----CCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------
Q psy2760 236 -----HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL--------------- 284 (333)
Q Consensus 236 -----~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~--------------- 284 (333)
.+.+++|++||++|+.|+++.+++.... ++.++|+.... ....++++|+
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChh
Confidence 1267999999999999999999876542 67788876532 3357888876
Q ss_pred CcceEeccccccccccC
Q psy2760 285 NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 285 ~i~liViDe~H~~~~~~ 301 (333)
.+.++|+||+|.+...+
T Consensus 175 ~~~~iViDEah~~~~~~ 191 (417)
T 2i4i_A 175 FCKYLVLDEADRMLDMG 191 (417)
T ss_dssp TCCEEEESSHHHHHHTT
T ss_pred hCcEEEEEChhHhhccC
Confidence 35779999999877654
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.70 E-value=1.9e-17 Score=160.97 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=95.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC---CcEEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLI 267 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~---~vgll 267 (333)
++|.|+++|.++++.+..|++++++||||||||++|+++++.....+.+++|++||++|+.|+++++++... .++.+
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 466899999999999999999999999999999999999888778889999999999999999999988544 37888
Q ss_pred eCCCCC-----------CCCcceEEecc-------------CcceEeccccccccccC
Q psy2760 268 DDLPPV-----------FPDVEKLLEDL-------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 268 tGd~~~-----------~~~a~ili~t~-------------~i~liViDe~H~~~~~~ 301 (333)
+|+... .....++++|+ ++.++|+||+|.+...+
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~ 155 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKAS 155 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhcc
Confidence 998765 12357888876 57889999999876543
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.70 E-value=2.9e-18 Score=188.54 Aligned_cols=219 Identities=17% Similarity=0.175 Sum_probs=145.5
Q ss_pred chhhhhhhhhcccccccccccchhHHHhh-cc-----CcccccccccccccccCCchhhhhhhcCCCCCCcccCCCCC-C
Q psy2760 73 SIHDFNKHLKFWKPKVQLVAGIINLIQLG-GE-----NASKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIP-Q 145 (333)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~ 145 (333)
..+++.+..|++.+++++|++.+++++.+ +. ..++++...|++....-.+.. .+++ +
T Consensus 507 ~~~~~~~~~y~~~~~l~vp~~~l~~~~~y~g~~~~~~~l~~l~~~~w~~~k~~~~~~~----------------~~~a~~ 570 (1151)
T 2eyq_A 507 ITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV----------------RDVAAE 570 (1151)
T ss_dssp CEEEEEEEECGGGCEEEEEGGGGGGEEECCCSCSSSCCCCCTTCSHHHHHHHHHHHHH----------------HHHHHH
T ss_pred CCcceEEEEecCCCceeeeHHHhhhHhcccCCCCCCCchhhcCchhHHHHHHHHHHHH----------------HHHHHH
Confidence 45688999999999999999999999988 32 345566777765511100000 0000 0
Q ss_pred ccCCcccccCCCCCCCCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHc----CC--cEEEEcCCC
Q psy2760 146 EVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEE----HN--HVFVTAHTS 219 (333)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~----g~--~vlv~apTG 219 (333)
++.....+.............|.. . ....|||.++++|.+|++.+.. |+ ++++++|||
T Consensus 571 l~~~~a~r~~~~g~~~~~~~~~~~---------~-------~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TG 634 (1151)
T 2eyq_A 571 LLDIYAQRAAKEGFAFKHDREQYQ---------L-------FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 634 (1151)
T ss_dssp HHHHHHHHHTSCCCCCCCCHHHHH---------H-------HHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCC
T ss_pred HHHHHHHHhhCCCCCCCCCHHHHH---------H-------HHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCC
Confidence 000000000000000001112221 1 2345788899999999999754 65 999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEEeCCCCCC-----------CCcceEEecc
Q psy2760 220 AGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLIDDLPPVF-----------PDVEKLLEDL 284 (333)
Q Consensus 220 SGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vglltGd~~~~-----------~~a~ili~t~ 284 (333)
+|||++|+.+++.....+.+++|++||++|+.|+++.|++.|+. ++.++|..... ....++|+|+
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 99999999999888888899999999999999999999988864 67777754421 2357888885
Q ss_pred ----------CcceEeccccccccccCcCcccccchhhhhhheeccCcchh
Q psy2760 285 ----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATTL 325 (333)
Q Consensus 285 ----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~~~d~~~~ 325 (333)
++.++|+||+|.++...+.. ...+....+.+++|+++.-
T Consensus 715 ~ll~~~~~~~~l~lvIiDEaH~~g~~~~~~--l~~l~~~~~vl~lSATp~p 763 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIVDEEHRFGVRHKER--IKAMRANVDILTLTATPIP 763 (1151)
T ss_dssp HHHHSCCCCSSEEEEEEESGGGSCHHHHHH--HHHHHTTSEEEEEESSCCC
T ss_pred HHHhCCccccccceEEEechHhcChHHHHH--HHHhcCCCCEEEEcCCCCh
Confidence 67899999999986543221 1222233567888888653
No 31
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.69 E-value=1.2e-16 Score=151.96 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=109.6
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcc
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSP 245 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~P 245 (333)
.+|++.+...+...++. .|+++|.++++.+..+ +++++++|||||||++|.++++..+. .+.+++|++|
T Consensus 10 ~~l~~~l~~~l~~~~~~------~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 10 LGLAPELLKGIYAMKFQ------KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp SCCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred CCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 35677777777665555 7999999999999887 99999999999999999999987653 5678999999
Q ss_pred cHHHHHHHHHHHHHhcCC----cEEEeCCCCCC---CCcceEEecc---------------CcceEeccccccccccCcC
Q psy2760 246 IKALSNQKYRDFRETFQD----VGLIDDLPPVF---PDVEKLLEDL---------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~~----vglltGd~~~~---~~a~ili~t~---------------~i~liViDe~H~~~~~~R~ 303 (333)
|++|+.|+++.+++.... ++...|+.... ....++++|+ ++.++|+||+|.+......
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 163 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGL 163 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcccc
Confidence 999999999999885432 55566654332 2456888875 4678999999988653321
Q ss_pred cccccchh----hhhhheeccCcchhhh
Q psy2760 304 WKPKVQLD----DLFDWTMASDATTLEI 327 (333)
Q Consensus 304 ~~~~~~l~----~l~~l~~~~d~~~~e~ 327 (333)
......+. ...+.+++|++..-.+
T Consensus 164 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 191 (395)
T 3pey_A 164 GDQCIRVKRFLPKDTQLVLFSATFADAV 191 (395)
T ss_dssp HHHHHHHHHTSCTTCEEEEEESCCCHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEEecCCHHH
Confidence 11111111 1245677777655433
No 32
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=8.9e-17 Score=163.89 Aligned_cols=135 Identities=13% Similarity=0.029 Sum_probs=107.5
Q ss_pred CCCcccchhhccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCCcHHHHHHHHHHHHhcC--
Q psy2760 161 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQNH-- 236 (333)
Q Consensus 161 ~~~~~~w~~~~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~--~g~~vlv~apTGSGKTl~~~l~il~~l~~-- 236 (333)
..++..|.....|++.+...++..|+. .|+++|.++++.++ .|++++++||||||||++|++|++..+..
T Consensus 16 ~~~~~~l~~~~~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~ 89 (579)
T 3sqw_A 16 EVTLDSLLEEGVLDKEIHKAITRMEFP------GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 89 (579)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTTCS------SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCC------CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc
Confidence 346777777777899998887766655 79999999999988 78999999999999999999999865422
Q ss_pred -----CCeEEEEcccHHHHHHHHHHHHHhcC--------CcEEEeCCCCCC--------CCcceEEecc-----------
Q psy2760 237 -----KTRTIYTSPIKALSNQKYRDFRETFQ--------DVGLIDDLPPVF--------PDVEKLLEDL----------- 284 (333)
Q Consensus 237 -----g~ral~l~PtraLa~Q~~~~l~~~f~--------~vglltGd~~~~--------~~a~ili~t~----------- 284 (333)
+.++||++||++|+.|+.+++++.+. .+..+.|+.... ....++|+|+
T Consensus 90 ~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~ 169 (579)
T 3sqw_A 90 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS 169 (579)
T ss_dssp TSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH
T ss_pred ccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc
Confidence 45899999999999999999987541 155666765432 1356888875
Q ss_pred -----CcceEeccccccccccC
Q psy2760 285 -----NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 285 -----~i~liViDe~H~~~~~~ 301 (333)
.+.++|+||+|.+...+
T Consensus 170 ~~~~~~~~~lViDEah~l~~~g 191 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIG 191 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTT
T ss_pred ccccccCCEEEEEChHHhhcCC
Confidence 46788999999987655
No 33
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.68 E-value=7.8e-17 Score=154.90 Aligned_cols=151 Identities=13% Similarity=0.011 Sum_probs=111.1
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+...+...+.. .|+++|.++++.+..|+++++++|||||||++|.++++..+. .+.+++|++||++
T Consensus 46 ~l~~~~~~~l~~~~~~------~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFE------KPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHH
Confidence 4666676666554444 799999999999999999999999999999999999987654 5678999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCCC--------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPVF--------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~~--------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
|+.|+.+.+++.+.. ++...|+.... ....++++|+ .+.++|+||+|.+...+
T Consensus 120 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 199 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 199 (414)
T ss_dssp HHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC
Confidence 999999999885532 56666765532 3457888875 36889999999876544
Q ss_pred cCccccc---chhhhhhheeccCcchhhhh
Q psy2760 302 KFWKPKV---QLDDLFDWTMASDATTLEIF 328 (333)
Q Consensus 302 R~~~~~~---~l~~l~~l~~~~d~~~~e~~ 328 (333)
....... .+-...+.+++|++..-++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 229 (414)
T 3eiq_A 200 FKDQIYDIFQKLNSNTQVVLLSATMPSDVL 229 (414)
T ss_dssp THHHHHHHHTTSCTTCEEEEECSCCCHHHH
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHH
Confidence 2211111 11123456788887654443
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.68 E-value=1.4e-16 Score=158.40 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=94.6
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhcC----
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQ---- 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-----g~ral~l~PtraLa~Q~~~~l~~~f~---- 262 (333)
||.|+++|.++++.+..|+++++++|||||||++|.++++..+.. +.++||++||++|+.|+++.+++.+.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 568999999999999999999999999999999999999866543 78999999999999999999988764
Q ss_pred CcEEEeCCCCCCCC-------cceEEecc----------------CcceEeccccccccccC
Q psy2760 263 DVGLIDDLPPVFPD-------VEKLLEDL----------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 263 ~vglltGd~~~~~~-------a~ili~t~----------------~i~liViDe~H~~~~~~ 301 (333)
.++.++|+.....+ ..++++|+ ++.++|+||+|.+...+
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 27889999866544 46888875 35789999999987654
No 35
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.68 E-value=1.4e-16 Score=153.79 Aligned_cols=151 Identities=12% Similarity=0.009 Sum_probs=111.5
Q ss_pred ccCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccH
Q psy2760 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIK 247 (333)
Q Consensus 171 ~~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptr 247 (333)
.++++.+...+...++. .|+++|+++++.+..|+++++++|||||||++|.++++..+. .+.+++|++||+
T Consensus 42 ~~l~~~l~~~l~~~g~~------~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 42 MGLREDLLRGIYAYGFE------KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp GCCCHHHHHHHHHHTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred cCCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 35777777766655554 699999999999999999999999999999999999987653 568999999999
Q ss_pred HHHHHHHHHHHHhcCC----cEEEeCCCCCC-------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 248 ALSNQKYRDFRETFQD----VGLIDDLPPVF-------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 248 aLa~Q~~~~l~~~f~~----vglltGd~~~~-------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
+|+.|+++.+++.... ++.++|+.... ....++++|+ .+.++|+||+|.+...+
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 9999999999875432 67777876542 2246788775 36789999999876543
Q ss_pred cCcccccchh----hhhhheeccCcchhhhh
Q psy2760 302 KFWKPKVQLD----DLFDWTMASDATTLEIF 328 (333)
Q Consensus 302 R~~~~~~~l~----~l~~l~~~~d~~~~e~~ 328 (333)
..-.. ..+. ...+.+++|++..-++.
T Consensus 196 ~~~~~-~~i~~~~~~~~~~i~~SAT~~~~~~ 225 (410)
T 2j0s_A 196 FKEQI-YDVYRYLPPATQVVLISATLPHEIL 225 (410)
T ss_dssp THHHH-HHHHTTSCTTCEEEEEESCCCHHHH
T ss_pred hHHHH-HHHHHhCccCceEEEEEcCCCHHHH
Confidence 11110 0011 22456777777655543
No 36
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.67 E-value=1.4e-16 Score=149.83 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=112.3
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCCcHHHHHHHHHHHHhc--CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g-~~vlv~apTGSGKTl~~~l~il~~l~--~g~ral~l~Ptra 248 (333)
++++.+...++..++. .|+++|+++++.+..+ +++++++|||||||+++..+++..+. .+.+++|++|+++
T Consensus 12 ~l~~~~~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 12 NLSDNILNAIRNKGFE------KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp SCCHHHHHHHHHHTCC------SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 4777788777766655 7999999999998777 79999999999999999999887654 4789999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCCCC------CcceEEecc---------------CcceEeccccccccccCcC
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPVFP------DVEKLLEDL---------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~~~------~a~ili~t~---------------~i~liViDe~H~~~~~~R~ 303 (333)
|+.|+.+++++.++. ++.++|+..... ...++++|+ ++.++|+||+|.+...+..
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 165 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 165 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchH
Confidence 999999999987653 677777765321 356788775 4678999999998654311
Q ss_pred cccccchh----hhhhheeccCcchhhhh
Q psy2760 304 WKPKVQLD----DLFDWTMASDATTLEIF 328 (333)
Q Consensus 304 ~~~~~~l~----~l~~l~~~~d~~~~e~~ 328 (333)
.....+. ...+.+++|++..-++.
T Consensus 166 -~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 193 (367)
T 1hv8_A 166 -KDVEKILNACNKDKRILLFSATMPREIL 193 (367)
T ss_dssp -HHHHHHHHTSCSSCEEEEECSSCCHHHH
T ss_pred -HHHHHHHHhCCCCceEEEEeeccCHHHH
Confidence 1111111 22456777887765544
No 37
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.66 E-value=1.2e-16 Score=152.35 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=99.2
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+...+...++. .|+++|.++++.+..|+++++++|||+|||++|+++++..+. .+.+++|++||++
T Consensus 14 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 14 LLKPELLRAIVDCGFE------HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp CCCHHHHHHHHHHSCC------SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 5677777776665544 699999999999999999999999999999999999987653 3568999999999
Q ss_pred HHHHHHHHHHHhcC-----CcEEEeCCCCCC--------CCcceEEecc---------------CcceEeccccccccc
Q psy2760 249 LSNQKYRDFRETFQ-----DVGLIDDLPPVF--------PDVEKLLEDL---------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 249 La~Q~~~~l~~~f~-----~vglltGd~~~~--------~~a~ili~t~---------------~i~liViDe~H~~~~ 299 (333)
|+.|+.+.+++... .++.++|+.... ....++++|+ ++.++|+||+|.+..
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 99999999977542 278888886532 2246888875 467899999998865
No 38
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.66 E-value=4.5e-16 Score=149.38 Aligned_cols=124 Identities=12% Similarity=0.009 Sum_probs=100.5
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+.+.+...++. .|+++|.++++.+..|+++++++|||||||++|.++++..+. .+.+++|++||++
T Consensus 27 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFE------KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CCCHHHHHHHHHTTCC------SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCC------CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 4677777766555544 699999999999999999999999999999999999987654 4668999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCC-------CCCcceEEecc---------------CcceEeccccccccccC
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPV-------FPDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~-------~~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
|+.|+++.+++.+.. ++.++|+... .....++++|+ ++.++|+||+|.+....
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 999999999886653 6777887653 23457888875 46889999999876543
No 39
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.66 E-value=4.7e-16 Score=144.93 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=96.3
Q ss_pred CChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHH
Q psy2760 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 252 (333)
Q Consensus 173 L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q 252 (333)
|++.+.+.++..|+. .|+++|+++++.+.+++++++++|||+|||++|..+++.. +.+++|++|+++|+.|
T Consensus 1 l~~~i~~~l~~~g~~------~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFK------NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCC------SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCC------CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHH
Confidence 345566666655554 7999999999999999999999999999999999988653 7789999999999999
Q ss_pred HHHHHHHhcC----CcEEEeCCCCCC------CCcceEEecc---------------CcceEeccccccccccC
Q psy2760 253 KYRDFRETFQ----DVGLIDDLPPVF------PDVEKLLEDL---------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 253 ~~~~l~~~f~----~vglltGd~~~~------~~a~ili~t~---------------~i~liViDe~H~~~~~~ 301 (333)
+++++++... .++.+.|+.... ....++++|+ ++.++|+||+|.+...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc
Confidence 9999987543 267788876532 2356888875 45789999999886554
No 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.66 E-value=1.7e-16 Score=151.33 Aligned_cols=147 Identities=13% Similarity=0.009 Sum_probs=110.1
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHH
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKA 248 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~Ptra 248 (333)
++++.+...+...++. .|+++|+++++.+..|+++++++|||+|||++|.++++..+. .+.+++|++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~------~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFE------EPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp CCCHHHHHHHHHHTCC------SCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCC------CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHH
Confidence 5777777766655554 799999999999999999999999999999999999986653 4679999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEeCCCCCCC------CcceEEecc---------------CcceEeccccccccccCcC
Q psy2760 249 LSNQKYRDFRETFQD----VGLIDDLPPVFP------DVEKLLEDL---------------NIGGLDELSIHDFNKHLKF 303 (333)
Q Consensus 249 La~Q~~~~l~~~f~~----vglltGd~~~~~------~a~ili~t~---------------~i~liViDe~H~~~~~~R~ 303 (333)
|+.|+.+.+++.+.. ++.++|+..... ...++++|+ ++.++|+||+|.+...+..
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~ 180 (394)
T 1fuu_A 101 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 180 (394)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcH
Confidence 999999999886543 677888765422 246788875 4678999999987654322
Q ss_pred cccccchh----hhhhheeccCcchh
Q psy2760 304 WKPKVQLD----DLFDWTMASDATTL 325 (333)
Q Consensus 304 ~~~~~~l~----~l~~l~~~~d~~~~ 325 (333)
-.... +. ...+.+++|++..-
T Consensus 181 ~~~~~-~~~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 181 EQIYQ-IFTLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp HHHHH-HHHHSCTTCEEEEECSSCCH
T ss_pred HHHHH-HHHhCCCCceEEEEEEecCH
Confidence 11111 11 12346777776653
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.66 E-value=1.5e-16 Score=168.69 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=107.2
Q ss_pred cCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 190 TWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
.+||.|+++|++|++.+..+ ++++++||||||||++|.++++..+..|.+++|++||++||.|+++.+++.++.
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 46889999999999997544 699999999999999999999988888899999999999999999999998753
Q ss_pred ----cEEEeCCCCCC-----------CCcceEEecc----------CcceEeccccccccccCcCcccccchhhhhhhee
Q psy2760 264 ----VGLIDDLPPVF-----------PDVEKLLEDL----------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTM 318 (333)
Q Consensus 264 ----vglltGd~~~~-----------~~a~ili~t~----------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~ 318 (333)
++.++|+.... ....++|+|+ ++.++|+||+|.++...|..-... ....+.++
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~--~~~~~vL~ 521 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNK--GKMVDTLV 521 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSS--SSCCCEEE
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHh--CCCCCEEE
Confidence 78899987643 2467888886 578999999999987766432222 23466888
Q ss_pred ccCcchhhh
Q psy2760 319 ASDATTLEI 327 (333)
Q Consensus 319 ~~d~~~~e~ 327 (333)
+|++++-+.
T Consensus 522 mSATp~p~t 530 (780)
T 1gm5_A 522 MSATPIPRS 530 (780)
T ss_dssp EESSCCCHH
T ss_pred EeCCCCHHH
Confidence 888875544
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.66 E-value=2.5e-16 Score=157.01 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhcC----
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQ---- 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-----g~ral~l~PtraLa~Q~~~~l~~~f~---- 262 (333)
++.|+++|.++++.+..|+++++++|||||||++|.++++..+.. +.++||++||++|+.|+.+.+++.+.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 468999999999999999999999999999999999999866543 78999999999999999999988765
Q ss_pred CcEEEeCCCCCCCC-------cceEEecc----------------CcceEeccccccccccC
Q psy2760 263 DVGLIDDLPPVFPD-------VEKLLEDL----------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 263 ~vglltGd~~~~~~-------a~ili~t~----------------~i~liViDe~H~~~~~~ 301 (333)
.++.++|+.....+ ..++++|+ ++.++|+||+|.+...+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 146 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 146 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc
Confidence 27888898865543 46888875 35789999999987654
No 43
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.61 E-value=1.4e-15 Score=141.18 Aligned_cols=130 Identities=16% Similarity=0.106 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHHhcCC----cEEE
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRETFQD----VGLI 267 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~PtraLa~Q~~~~l~~~f~~----vgll 267 (333)
+.|+++|.++++.+..+++.++++|||+|||+++..++...... +.+++|++||++|++|+.+++++.+.. ++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 47999999999998777889999999999999998877755543 349999999999999999999875432 4666
Q ss_pred eCCCCCC----CCcceEEecc------------CcceEeccccccccccCcCcccccc-hhhhhhheeccCcch
Q psy2760 268 DDLPPVF----PDVEKLLEDL------------NIGGLDELSIHDFNKHLKFWKPKVQ-LDDLFDWTMASDATT 324 (333)
Q Consensus 268 tGd~~~~----~~a~ili~t~------------~i~liViDe~H~~~~~~R~~~~~~~-l~~l~~l~~~~d~~~ 324 (333)
.|+.... ....++++|+ ++.++|+||+|.+... .+...+. +......++.|+++.
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC
T ss_pred eCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC
Confidence 6665543 4567888875 5688999999998754 2221111 112345667777663
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.60 E-value=9.6e-16 Score=152.96 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=101.5
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHHHHHHHHHHHHh--cC--CcEE
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKALSNQKYRDFRET--FQ--DVGL 266 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g-~ral~l~PtraLa~Q~~~~l~~~--f~--~vgl 266 (333)
++.|+++|.+|++.+..++++++++|||+|||++++.++...+..+ .+++|++||++|+.|++++|++. +. .++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 4489999999999998889999999999999999998888665444 49999999999999999999765 33 2677
Q ss_pred EeCCCCCC----CCcceEEecc------------CcceEeccccccccccCcCcccccc-hhhhhhheeccCcchh
Q psy2760 267 IDDLPPVF----PDVEKLLEDL------------NIGGLDELSIHDFNKHLKFWKPKVQ-LDDLFDWTMASDATTL 325 (333)
Q Consensus 267 ltGd~~~~----~~a~ili~t~------------~i~liViDe~H~~~~~~R~~~~~~~-l~~l~~l~~~~d~~~~ 325 (333)
++|+.... ....++++|+ ++.++|+||+|.+... .+..... +......+.+|+++.-
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRD 264 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCGGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCCCC
Confidence 88887665 5567888875 5789999999998763 2322211 1122346666777743
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.60 E-value=2.5e-15 Score=164.67 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=98.0
Q ss_pred ccCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----Cc
Q psy2760 189 HTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DV 264 (333)
Q Consensus 189 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~v 264 (333)
..++|.|+++|.+|++.+..|++++++||||||||++|+.+++..+..+.+++|++|||+||.|+++++++ |+ .+
T Consensus 73 ~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~~~~i~v 151 (1104)
T 4ddu_A 73 KKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LADEKVKI 151 (1104)
T ss_dssp HHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TSCTTSCE
T ss_pred HhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hhCCCCeE
Confidence 34677899999999999999999999999999999999889888888899999999999999999999988 43 37
Q ss_pred EEEeCCCCCC-----------CCcceEEecc-------------CcceEeccccccccccCc
Q psy2760 265 GLIDDLPPVF-----------PDVEKLLEDL-------------NIGGLDELSIHDFNKHLK 302 (333)
Q Consensus 265 glltGd~~~~-----------~~a~ili~t~-------------~i~liViDe~H~~~~~~R 302 (333)
+.++|+.+.. ....++|+|+ ++.++|+||+|.+...+|
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSH
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccc
Confidence 8899998762 2367889886 578999999998876553
No 46
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.60 E-value=3.1e-15 Score=154.51 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhcC--
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQ-- 262 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-----g~ral~l~PtraLa~Q~~~~l~~~f~-- 262 (333)
++| .|+++|.++++.++.|+++++++|||+|||++|.++++..+.. +.+++|++||++|+.|+.+.+++.+.
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~ 88 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERH 88 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccC
Confidence 444 8999999999999999999999999999999999999865432 27899999999999999999988774
Q ss_pred --CcEEEeCCCCCCC-------CcceEEecc----------------CcceEecccccccccc
Q psy2760 263 --DVGLIDDLPPVFP-------DVEKLLEDL----------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 263 --~vglltGd~~~~~-------~a~ili~t~----------------~i~liViDe~H~~~~~ 300 (333)
.++.++|+..... ...++++|+ ++.++|+||+|.+...
T Consensus 89 ~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 89 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc
Confidence 2788999876543 346888875 3578999999998644
No 47
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.59 E-value=6.4e-15 Score=151.78 Aligned_cols=156 Identities=11% Similarity=0.133 Sum_probs=113.7
Q ss_pred cccchh-hccCChhhhhhhhccccccccCCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEE
Q psy2760 164 QTEWAE-MLDVSKPVLDFDAKVPIMAHTWPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 241 (333)
Q Consensus 164 ~~~w~~-~~~L~~~l~~~~~~~~~~~~~~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral 241 (333)
...|.. ..++++.+...++. .|+| .|+++|.++++.++.|+++++.+|||+|||++|.+|++. .+.++|
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~------~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~l 88 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQN------VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTL 88 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHH------TSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEE
T ss_pred hhccccccCCCCHHHHHHHHH------HhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEE
Confidence 345544 23455566665543 2344 799999999999999999999999999999999999864 356899
Q ss_pred EEcccHHHHHHHHHHHHHhcCCcEEEeCCCCC-------------CCCcceEEecc--------------------Ccce
Q psy2760 242 YTSPIKALSNQKYRDFRETFQDVGLIDDLPPV-------------FPDVEKLLEDL--------------------NIGG 288 (333)
Q Consensus 242 ~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~-------------~~~a~ili~t~--------------------~i~l 288 (333)
|++|+++|+.|+.+.+++..-.++.++|+... .....+++.|+ .+.+
T Consensus 89 VisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~ 168 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTR 168 (591)
T ss_dssp EECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEE
T ss_pred EEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcE
Confidence 99999999999999998853347788887653 23456888776 4678
Q ss_pred EeccccccccccCcCcccccch----hh---hhhheeccCcchhhhh
Q psy2760 289 LDELSIHDFNKHLKFWKPKVQL----DD---LFDWTMASDATTLEIF 328 (333)
Q Consensus 289 iViDe~H~~~~~~R~~~~~~~l----~~---l~~l~~~~d~~~~e~~ 328 (333)
+|+||+|.+...+..++..... .+ .+..+++|++..-+++
T Consensus 169 iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~ 215 (591)
T 2v1x_A 169 IAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVL 215 (591)
T ss_dssp EEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHH
T ss_pred EEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHH
Confidence 9999999987765444443211 11 2346777777665543
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=130.99 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHHHHH-HHHHHHHhcC--
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPIKALSNQ-KYRDFRETFQ-- 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~PtraLa~Q-~~~~l~~~f~-- 262 (333)
.+.|+++|.++++.+..++++++++|||+|||+++..++...+. .+.+++|++|+++|+.| +.+.+.+...
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~ 110 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 110 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 45899999999999999999999999999999999998875432 36799999999999999 6666666443
Q ss_pred -CcEEEeCCCCCCCC-------cceEEecc---------------------CcceEeccccccccc
Q psy2760 263 -DVGLIDDLPPVFPD-------VEKLLEDL---------------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 263 -~vglltGd~~~~~~-------a~ili~t~---------------------~i~liViDe~H~~~~ 299 (333)
.++.++|+...... ..++++|+ ++.++|+||+|.+..
T Consensus 111 ~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 111 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 37778887665432 45677654 346899999999864
No 49
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.59 E-value=8.6e-16 Score=154.68 Aligned_cols=147 Identities=11% Similarity=0.058 Sum_probs=94.9
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEccc
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTSPI 246 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~Pt 246 (333)
++++.+...+...+.. .|+++|.+|++.+.++ +++++++|||||||++|.++++..+.. +.+++|++|+
T Consensus 125 ~l~~~~~~~l~~~g~~------~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~ 198 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXX------XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 198 (508)
T ss_dssp --------------CE------ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSC
T ss_pred cccccccccccccccc------CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence 3444454444433333 6899999999999887 999999999999999999999877643 4589999999
Q ss_pred HHHHHHHHHHHHHhcCC--c--EEEeCCCCC---CCCcceEEecc---------------CcceEeccccccccccCcCc
Q psy2760 247 KALSNQKYRDFRETFQD--V--GLIDDLPPV---FPDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFW 304 (333)
Q Consensus 247 raLa~Q~~~~l~~~f~~--v--glltGd~~~---~~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~ 304 (333)
++|+.|+++++++.+.. + ....|+... .....++++|+ ++.++|+||+|.+....+..
T Consensus 199 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~ 278 (508)
T 3fho_A 199 RELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG 278 (508)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CH
T ss_pred HHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcH
Confidence 99999999999987653 2 222232221 12457888875 47889999999887643222
Q ss_pred ccccchhh----hhhheeccCcch
Q psy2760 305 KPKVQLDD----LFDWTMASDATT 324 (333)
Q Consensus 305 ~~~~~l~~----l~~l~~~~d~~~ 324 (333)
.....+.. ..+++++|++.+
T Consensus 279 ~~~~~i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 279 DQSMRIKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp HHHHHHHHHSCTTCEEEEEESCCS
T ss_pred HHHHHHHHhCCcCCeEEEEeCCCC
Confidence 22222222 244678888766
No 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.58 E-value=4e-15 Score=157.42 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhcC----Cc
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQ----DV 264 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-----g~ral~l~PtraLa~Q~~~~l~~~f~----~v 264 (333)
.|+++|.++++.+..|+++++++|||||||++|.++++..+.. +.++||++||++|+.|+++.|++.++ .+
T Consensus 248 ~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 327 (797)
T 4a2q_A 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSV 327 (797)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceE
Confidence 8999999999999999999999999999999999999876544 78999999999999999999998765 27
Q ss_pred EEEeCCCCCCC-------CcceEEecc----------------CcceEeccccccccccC
Q psy2760 265 GLIDDLPPVFP-------DVEKLLEDL----------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 265 glltGd~~~~~-------~a~ili~t~----------------~i~liViDe~H~~~~~~ 301 (333)
+.++|+..... ...++|+|+ ++.++|+||+|.+....
T Consensus 328 ~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp EEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS
T ss_pred EEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc
Confidence 88999886554 346888875 35889999999987654
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.58 E-value=4.2e-15 Score=146.94 Aligned_cols=126 Identities=17% Similarity=0.054 Sum_probs=100.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC-C-cEEEe
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-D-VGLID 268 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~-~-vgllt 268 (333)
+++.|+++|.+++..+..++++++++|||+|||++++.++... +.+++|++|+++|+.|+.++|++ |+ . +++++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 3568999999999999888899999999999999999988754 67899999999999999999988 76 4 88888
Q ss_pred CCCCCCCCcceEEecc------------CcceEeccccccccccCcCcccccchhhhhhheeccCcch
Q psy2760 269 DLPPVFPDVEKLLEDL------------NIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATT 324 (333)
Q Consensus 269 Gd~~~~~~a~ili~t~------------~i~liViDe~H~~~~~~R~~~~~~~l~~l~~l~~~~d~~~ 324 (333)
|+... ...++++|+ ++.++|+||+|.+.... ++...........+++|+++.
T Consensus 166 g~~~~--~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~--~~~~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 166 GRIKE--LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp SSCBC--CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTT--THHHHHTCCCSEEEEEESCCC
T ss_pred CCcCC--cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChH--HHHHHHhcCCCeEEEEecCcc
Confidence 88764 356888875 47899999999987653 222221222234677788775
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=153.30 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC------CCeEEEEcccHHHHHHH-HHHHHHhcC--
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH------KTRTIYTSPIKALSNQK-YRDFRETFQ-- 262 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~------g~ral~l~PtraLa~Q~-~~~l~~~f~-- 262 (333)
+|.|+++|.++++.+..|+++++++|||+|||++|.++++..+.. +.++||++|+++|+.|+ .++|++.++
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 458999999999999999999999999999999999999865432 27899999999999999 999999886
Q ss_pred -CcEEEeCCCCCCC-------CcceEEecc---------------------CcceEeccccccccc
Q psy2760 263 -DVGLIDDLPPVFP-------DVEKLLEDL---------------------NIGGLDELSIHDFNK 299 (333)
Q Consensus 263 -~vglltGd~~~~~-------~a~ili~t~---------------------~i~liViDe~H~~~~ 299 (333)
.++.++|+..... ...++++|+ ++.++|+||+|.+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 4788999877653 346777764 357899999998743
No 53
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.54 E-value=1.7e-14 Score=131.78 Aligned_cols=104 Identities=20% Similarity=0.120 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC-C-cEEEe
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-D-VGLID 268 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~-~-vgllt 268 (333)
+++.++++|.+++..+..++++++++|||+|||.++..++... +.+++|++|+++|+.|+.+++++ |+ . ++.++
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~ 165 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEES
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEe
Confidence 3458999999999999888899999999999999998877543 67899999999999999999988 65 3 78888
Q ss_pred CCCCCCCCcceEEecc------------CcceEecccccccccc
Q psy2760 269 DLPPVFPDVEKLLEDL------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 269 Gd~~~~~~a~ili~t~------------~i~liViDe~H~~~~~ 300 (333)
|+... ...+++.|+ ...++|+||+|++...
T Consensus 166 g~~~~--~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 166 GRIKE--LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp SSCBC--CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTT
T ss_pred CCCCC--cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCCh
Confidence 87654 456788775 4789999999999754
No 54
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.53 E-value=1.7e-14 Score=146.28 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=100.3
Q ss_pred CCC-CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 191 WPF-ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 191 ~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltG 269 (333)
|+| .|+++|.++++.+..|+++++.+|||+|||++|.+|++.. +.+++|++|+++|+.|+.+.+++..-.++.++|
T Consensus 21 ~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~ 97 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMKDQVDQLQANGVAAACLNS 97 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECT
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeC
Confidence 344 7899999999999999999999999999999999998643 468999999999999999999874334777887
Q ss_pred CCCCC-----------CCcceEEecc---------------CcceEeccccccccccCcCccccc----chhhh---hhh
Q psy2760 270 LPPVF-----------PDVEKLLEDL---------------NIGGLDELSIHDFNKHLKFWKPKV----QLDDL---FDW 316 (333)
Q Consensus 270 d~~~~-----------~~a~ili~t~---------------~i~liViDe~H~~~~~~R~~~~~~----~l~~l---~~l 316 (333)
+.... ....+++.|+ ++.++|+||+|.+...+..++... .+.+. +..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 177 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCE
Confidence 76532 2246777764 567899999999976655444321 11121 345
Q ss_pred eeccCcchhhh
Q psy2760 317 TMASDATTLEI 327 (333)
Q Consensus 317 ~~~~d~~~~e~ 327 (333)
+..|++..-++
T Consensus 178 i~lSAT~~~~~ 188 (523)
T 1oyw_A 178 MALTATADDTT 188 (523)
T ss_dssp EEEESCCCHHH
T ss_pred EEEeCCCCHHH
Confidence 66777665443
No 55
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.53 E-value=1.8e-14 Score=138.98 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEEE
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLI 267 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgll 267 (333)
+.|+++|.+++..+..+ ++++++|||+|||+++..++...+ ..+.++||++|+++|+.|+.+++++.++ .++.+
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 37999999999999888 999999999999999999887554 4678999999999999999999998775 37888
Q ss_pred eCCCCCCC------CcceEEecc---------------CcceEecccccccccc
Q psy2760 268 DDLPPVFP------DVEKLLEDL---------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 268 tGd~~~~~------~a~ili~t~---------------~i~liViDe~H~~~~~ 300 (333)
+|+..... ...++++|+ ++.++|+||+|.+...
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTT
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCC
Confidence 88875432 346788775 4678999999998754
No 56
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.52 E-value=2e-14 Score=155.10 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhcC----C
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQ----D 263 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~-----g~ral~l~PtraLa~Q~~~~l~~~f~----~ 263 (333)
+.|+++|.++++.+..|+++++++|||||||++|.++++..+.. +.++||++||++|+.|++++|++.++ .
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 38999999999999999999999999999999999999866544 78899999999999999999988764 2
Q ss_pred cEEEeCCCCCCCC-------cceEEecc----------------CcceEeccccccccccC
Q psy2760 264 VGLIDDLPPVFPD-------VEKLLEDL----------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 264 vglltGd~~~~~~-------a~ili~t~----------------~i~liViDe~H~~~~~~ 301 (333)
++.++|+.....+ ..++|+|+ ++.++|+||+|.+....
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~ 387 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc
Confidence 7889998865542 36888875 25789999999987653
No 57
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.44 E-value=1.2e-13 Score=150.86 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=89.4
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhcC------
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQ------ 262 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~------ 262 (333)
.++|.| ++|.++++.++.|++++++||||||||+ |.++++ .....+.+++|++|||+||.|+++.+++.+.
T Consensus 53 ~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 53 CVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp TTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred hcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 456678 9999999999999999999999999998 666665 4456788999999999999999999988664
Q ss_pred --CcEEEeCCCCCCC---------CcceEEecc-----------CcceEeccccccccc
Q psy2760 263 --DVGLIDDLPPVFP---------DVEKLLEDL-----------NIGGLDELSIHDFNK 299 (333)
Q Consensus 263 --~vglltGd~~~~~---------~a~ili~t~-----------~i~liViDe~H~~~~ 299 (333)
.++.++|+..... ...++++|+ ++.++|+||+|.+.+
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT
T ss_pred cceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh
Confidence 3577888876533 146888886 466999999998765
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.37 E-value=7.3e-13 Score=135.00 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=76.4
Q ss_pred CCCCCHHHHHHHHHHHc-----CCcEEEEcCCCCcHHHHHHHHHHHHhc---------CCCeEEEEcccHHHHHHHH-HH
Q psy2760 192 PFELDVFQKQAIIKLEE-----HNHVFVTAHTSAGKTVIAEYAIALSQN---------HKTRTIYTSPIKALSNQKY-RD 256 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~-----g~~vlv~apTGSGKTl~~~l~il~~l~---------~g~ral~l~PtraLa~Q~~-~~ 256 (333)
++.|+++|.+|++.+.. ++++++++|||||||++++..+..... .+.++||++||++|+.|+. +.
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 34899999999998743 467999999999999998776654433 5689999999999999999 66
Q ss_pred HHHhcCC-cEEEeCCCCCCCCcceEEecc-------------------CcceEeccccccccccC-cCcccccchhhhhh
Q psy2760 257 FRETFQD-VGLIDDLPPVFPDVEKLLEDL-------------------NIGGLDELSIHDFNKHL-KFWKPKVQLDDLFD 315 (333)
Q Consensus 257 l~~~f~~-vglltGd~~~~~~a~ili~t~-------------------~i~liViDe~H~~~~~~-R~~~~~~~l~~l~~ 315 (333)
++. |+. ++.++++. ......++++|+ .+.++|+||+|.+.... ..|+.....+....
T Consensus 256 ~~~-~~~~~~~~~~~~-~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~ 333 (590)
T 3h1t_A 256 FTP-FGDARHKIEGGK-VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAF 333 (590)
T ss_dssp CTT-TCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSE
T ss_pred HHh-cchhhhhhhccC-CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcce
Confidence 654 554 55555443 334556777765 25689999999986542 23332222222234
Q ss_pred heeccCcch
Q psy2760 316 WTMASDATT 324 (333)
Q Consensus 316 l~~~~d~~~ 324 (333)
.+.+|+++.
T Consensus 334 ~l~lTATP~ 342 (590)
T 3h1t_A 334 QIGMTATPL 342 (590)
T ss_dssp EEEEESSCS
T ss_pred EEEeccccc
Confidence 777788765
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.34 E-value=3.8e-12 Score=115.28 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHh-cC----CCeEEEEcccHHHHHHHHHHHHHhcCC---
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NH----KTRTIYTSPIKALSNQKYRDFRETFQD--- 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l-~~----g~ral~l~PtraLa~Q~~~~l~~~f~~--- 263 (333)
++.++++|.++++.+..|++++++||||||||.++..+++... .. +.++++++|+++|+.|+.+.+...++.
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 3457899999999999999999999999999998888776432 22 348999999999999999999876653
Q ss_pred --cEEEeCCCCC--CCCcceEEecc------------CcceEeccccccccccCcCcc--cccchh---hhhhheeccCc
Q psy2760 264 --VGLIDDLPPV--FPDVEKLLEDL------------NIGGLDELSIHDFNKHLKFWK--PKVQLD---DLFDWTMASDA 322 (333)
Q Consensus 264 --vglltGd~~~--~~~a~ili~t~------------~i~liViDe~H~~~~~~R~~~--~~~~l~---~l~~l~~~~d~ 322 (333)
+|.-...... .....++++|+ ++.++|+||+|..+-.. ++. ....+. ...+.+++|++
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~-~~~~~~l~~i~~~~~~~~~il~SAT 217 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINT-DFLLVVLRDVVQAYPEVRIVLMSAT 217 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHH-HHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcch-HHHHHHHHHHHhhCCCCeEEEEecC
Confidence 3322211111 13456888876 67899999999731111 111 001111 22457888887
Q ss_pred chhhhh
Q psy2760 323 TTLEIF 328 (333)
Q Consensus 323 ~~~e~~ 328 (333)
-..+.|
T Consensus 218 ~~~~~~ 223 (235)
T 3llm_A 218 IDTSMF 223 (235)
T ss_dssp SCCHHH
T ss_pred CCHHHH
Confidence 766654
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.31 E-value=2.6e-12 Score=134.37 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=79.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCCCC-----CcceEE
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFP-----DVEKLL 281 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~~~-----~a~ili 281 (333)
++|++++++||||||||+.++..+.. ..+++|++|||+||.|+++++++....+++++|+..... ...+++
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~----~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~ 228 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFS----AKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVS 228 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH----SSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHh----cCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccceeE
Confidence 57899999999999999954444332 345699999999999999999886446999999876532 245777
Q ss_pred ecc-------CcceEeccccccccccCcCcccccchh
Q psy2760 282 EDL-------NIGGLDELSIHDFNKHLKFWKPKVQLD 311 (333)
Q Consensus 282 ~t~-------~i~liViDe~H~~~~~~R~~~~~~~l~ 311 (333)
+|+ .+.++|+||+|.+.+..|++.+...+.
T Consensus 229 ~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~ 265 (677)
T 3rc3_A 229 CTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALL 265 (677)
T ss_dssp EEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred ecHhHhhhcccCCEEEEecceecCCccchHHHHHHHH
Confidence 764 458999999999999999998875444
No 61
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.26 E-value=1.6e-12 Score=128.62 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=76.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCCC--CCcceEEec-
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVF--PDVEKLLED- 283 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~~--~~a~ili~t- 283 (333)
.|++++++||||||||++|+++++ .....+.+++|++||++|+.|+++.+.. -.++..+|..... +...+.+.+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCccccCCCCceEEEEch
Confidence 378999999999999999999888 5567788999999999999999987752 1367666653322 122222222
Q ss_pred -------------cCcceEeccccccccc---cCcCcccccchhhhhhheeccCcchhhh
Q psy2760 284 -------------LNIGGLDELSIHDFNK---HLKFWKPKVQLDDLFDWTMASDATTLEI 327 (333)
Q Consensus 284 -------------~~i~liViDe~H~~~~---~~R~~~~~~~l~~l~~l~~~~d~~~~e~ 327 (333)
.++.++|+||+|.++. ..|++-.........+.+++|+++.-++
T Consensus 79 ~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 79 STFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp HHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred HHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 2689999999999842 2222222221112356788888776443
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.25 E-value=1.4e-12 Score=136.08 Aligned_cols=102 Identities=9% Similarity=-0.049 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCC
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVF 274 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~ 274 (333)
+++|.+++..+..+++++++||||||||++|.++++. .+.+++|++|||+||.|+++++.+.++. ++..+|+....
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~ 295 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTIT 295 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEEC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEecc
Confidence 4445555555668899999999999999999988764 4679999999999999999999887764 89999988777
Q ss_pred CCcceEEecc------------CcceEecccccccccc
Q psy2760 275 PDVEKLLEDL------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 275 ~~a~ili~t~------------~i~liViDe~H~~~~~ 300 (333)
....++++|+ ++.++|+||+|+++..
T Consensus 296 ~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~ 333 (666)
T 3o8b_A 296 TGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDST 333 (666)
T ss_dssp CCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHH
T ss_pred CCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCcc
Confidence 7788899876 4788999999988644
No 63
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.20 E-value=1.9e-11 Score=129.66 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=85.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgl 266 (333)
++|.|+++|..+++.+++|+ ++.++||+|||++|.+|++.....|.++++++||++||.|..+.+...+. .++.
T Consensus 80 lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp HSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 35579999999999999998 89999999999999999985444678999999999999999988766543 2788
Q ss_pred EeCCCCCCCC-----cceEEecc----------------------CcceEecccccccc
Q psy2760 267 IDDLPPVFPD-----VEKLLEDL----------------------NIGGLDELSIHDFN 298 (333)
Q Consensus 267 ltGd~~~~~~-----a~ili~t~----------------------~i~liViDe~H~~~ 298 (333)
+.|+.+...+ ..++++|+ ++.++|+||++.+-
T Consensus 158 i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 158 NLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp CCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred EeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 8888754322 35788775 24578999999764
No 64
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.20 E-value=3.1e-11 Score=122.89 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 193 FELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 193 f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
|.++++|.+++.. +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++...
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 5789999998775 468999999999999999999999886 5789999999999999999988664
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.20 E-value=7e-13 Score=138.59 Aligned_cols=133 Identities=10% Similarity=-0.035 Sum_probs=85.3
Q ss_pred CCCHHHH-----HHHHHHH------cCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 194 ELDVFQK-----QAIIKLE------EHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 194 ~l~~~Q~-----~ai~~l~------~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
.|+++|+ ++++.++ .|++++++||||||||++|+++++.. ...+.+++|++|||+||.|+++.++. +
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~-~ 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG-L 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc-C
Confidence 5778888 8888766 89999999999999999999998855 45678999999999999999998864 2
Q ss_pred CCcEEEeCCCC-C-CCCcceEEe--------------ccCcceEecccccccccc---CcCcccccchhhhhhheeccCc
Q psy2760 262 QDVGLIDDLPP-V-FPDVEKLLE--------------DLNIGGLDELSIHDFNKH---LKFWKPKVQLDDLFDWTMASDA 322 (333)
Q Consensus 262 ~~vglltGd~~-~-~~~a~ili~--------------t~~i~liViDe~H~~~~~---~R~~~~~~~l~~l~~l~~~~d~ 322 (333)
.++..++... . .+..-+... ..++.++|+||+|.++.. .+++..........+.+++|++
T Consensus 294 -~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT 372 (673)
T 2wv9_A 294 -PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTAT 372 (673)
T ss_dssp -CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred -CeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCC
Confidence 2333333221 1 111111111 136899999999998321 1222211100123567888887
Q ss_pred chhhhh
Q psy2760 323 TTLEIF 328 (333)
Q Consensus 323 ~~~e~~ 328 (333)
..-++.
T Consensus 373 ~~~~i~ 378 (673)
T 2wv9_A 373 PPGTSD 378 (673)
T ss_dssp CTTCCC
T ss_pred CChhhh
Confidence 765443
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.20 E-value=5.2e-12 Score=125.85 Aligned_cols=121 Identities=11% Similarity=-0.044 Sum_probs=77.6
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCC--CCCcceEEe
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPV--FPDVEKLLE 282 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~--~~~a~ili~ 282 (333)
+..+++++++||||||||++|.++++.. ...+.+++|++|||+|+.|++++++. + .++..++.... .+...+.+.
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g-~-~v~~~~~~~~~~~t~~~~i~~~ 95 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG-L-PVRYQTSAVQREHQGNEIVDVM 95 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT-S-CEEECC--------CCCSEEEE
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC-c-eEeEEecccccCCCCCcEEEEE
Confidence 5778999999999999999999998854 34778999999999999999998852 1 23332222211 122222222
Q ss_pred c--------------cCcceEeccccccccc---cCcCcccccchhhhhhheeccCcchhhhh
Q psy2760 283 D--------------LNIGGLDELSIHDFNK---HLKFWKPKVQLDDLFDWTMASDATTLEIF 328 (333)
Q Consensus 283 t--------------~~i~liViDe~H~~~~---~~R~~~~~~~l~~l~~l~~~~d~~~~e~~ 328 (333)
+ .++.++|+||+|.++. ..+++..........+.+++|++..-++.
T Consensus 96 ~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 96 CHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTD 158 (459)
T ss_dssp EHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred chHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchh
Confidence 2 2678999999997531 11222222211123567888887765543
No 67
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.19 E-value=5.1e-12 Score=125.49 Aligned_cols=130 Identities=10% Similarity=-0.077 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHcCCcE-EEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCC
Q psy2760 194 ELDVFQKQAIIKLEEHNHV-FVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLP 271 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~v-lv~apTGSGKTl~~~l~il~-~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~ 271 (333)
.++++|+ +++.++.++++ +++||||||||++|+++++. ....+.+++|++|||+|+.|+++.+.. + .++...+..
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g-~-~v~~~~~~~ 80 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRG-L-PIRYQTPAV 80 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S-CEEECCTTC
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcC-c-eeeeeeccc
Confidence 4566664 67777777766 99999999999999998874 455778999999999999999988742 1 233322222
Q ss_pred C--CCCCcceEEecc--------------CcceEeccccccccccCcCccccc----chhhhhhheeccCcchhhh
Q psy2760 272 P--VFPDVEKLLEDL--------------NIGGLDELSIHDFNKHLKFWKPKV----QLDDLFDWTMASDATTLEI 327 (333)
Q Consensus 272 ~--~~~~a~ili~t~--------------~i~liViDe~H~~~~~~R~~~~~~----~l~~l~~l~~~~d~~~~e~ 327 (333)
. ..+...+.+.|. ++.++|+||+|..+. ........ ......+.+++|++..-++
T Consensus 81 ~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 155 (451)
T 2jlq_A 81 KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDP-CSVAARGYISTRVEMGEAAAIFMTATPPGST 155 (451)
T ss_dssp SCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred cccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCc-chHHHHHHHHHhhcCCCceEEEEccCCCccc
Confidence 1 122334545542 678999999998722 11111111 0111345778887765443
No 68
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.18 E-value=1.9e-11 Score=129.66 Aligned_cols=105 Identities=14% Similarity=0.023 Sum_probs=85.9
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEEE
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLI 267 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgll 267 (333)
+..|+++|..+++.+++|+ ++.++||+|||++|.+|++.....|.++++++|||+||.|+++.+...+. .++.+
T Consensus 72 g~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i 149 (853)
T 2fsf_A 72 GMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGIN 149 (853)
T ss_dssp SCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4479999999999999998 89999999999999999986555678999999999999999988876543 27888
Q ss_pred eCCCCCCC-----CcceEEecc----------------------CcceEecccccccc
Q psy2760 268 DDLPPVFP-----DVEKLLEDL----------------------NIGGLDELSIHDFN 298 (333)
Q Consensus 268 tGd~~~~~-----~a~ili~t~----------------------~i~liViDe~H~~~ 298 (333)
+|+.+... ...++++|+ ++.++|+||+|.+-
T Consensus 150 ~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 150 LPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred eCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 89876431 135788875 34668999999664
No 69
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.16 E-value=1.5e-11 Score=122.06 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCC-CCCcceE--E
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPV-FPDVEKL--L 281 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~-~~~a~il--i 281 (333)
+.+|++++++||||||||++|+++++.. ...+.+++|++||++||.|+++.++. + .++..++.... .....++ +
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-~-~v~~~~~~~~~v~Tp~~l~~~l 82 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-L-DVKFHTQAFSAHGSGREVIDAM 82 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S-CEEEESSCCCCCCCSSCCEEEE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-C-CeEEecccceeccCCccceeee
Confidence 3568999999999999999999988864 45677999999999999999998864 2 24444444311 1111111 1
Q ss_pred e-------------ccCcceEecccccccccc---CcCcccccchhhhhhheeccCcchhh
Q psy2760 282 E-------------DLNIGGLDELSIHDFNKH---LKFWKPKVQLDDLFDWTMASDATTLE 326 (333)
Q Consensus 282 ~-------------t~~i~liViDe~H~~~~~---~R~~~~~~~l~~l~~l~~~~d~~~~e 326 (333)
. ..++.++|+||+|.++.. .+++..........+.+++|++..-.
T Consensus 83 ~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 83 CHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp EHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred cccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 1 136899999999998211 11222111111235678888876544
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.15 E-value=1e-10 Score=116.20 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcCC--c
Q psy2760 193 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD--V 264 (333)
Q Consensus 193 f~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~~f~~--v 264 (333)
..|+|+|.+++..+ ..+++++++.+||+|||++++..+.... ....++|||+| .+|+.|+.+++++.++. +
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 37999999998765 5688999999999999999876665433 33478999999 57999999999886654 6
Q ss_pred EEEeCCCCCC--CCcceEEecc------------CcceEeccccccccccC
Q psy2760 265 GLIDDLPPVF--PDVEKLLEDL------------NIGGLDELSIHDFNKHL 301 (333)
Q Consensus 265 glltGd~~~~--~~a~ili~t~------------~i~liViDe~H~~~~~~ 301 (333)
.+++|+.... ....+++.|+ ...++|+||+|.+.+..
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~ 165 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ 165 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh
Confidence 7777765432 2245777765 45789999999997654
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.15 E-value=9.6e-11 Score=126.91 Aligned_cols=133 Identities=16% Similarity=0.103 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhcCC-cE
Q psy2760 191 WPFELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETFQD-VG 265 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~--g~~vlv~apTGSGKTl~~~l~il~~l~~g--~ral~l~PtraLa~Q~~~~l~~~f~~-vg 265 (333)
..+.|+|+|.+++..+.. +.+++++.+||+|||++++..+......+ .+++||+|+ +|+.|+..++.+.|+. +.
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~ 228 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFA 228 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEE
Confidence 356899999999988744 55899999999999999988877655444 489999999 9999999999888864 66
Q ss_pred EEeCCC---------CCCCCcceEEecc----------------CcceEeccccccccccCcC----cccccchhhhh-h
Q psy2760 266 LIDDLP---------PVFPDVEKLLEDL----------------NIGGLDELSIHDFNKHLKF----WKPKVQLDDLF-D 315 (333)
Q Consensus 266 lltGd~---------~~~~~a~ili~t~----------------~i~liViDe~H~~~~~~R~----~~~~~~l~~l~-~ 315 (333)
+++|+. .......++++|+ +..++|+||+|.+...... |+....+.... .
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~ 308 (968)
T 3dmq_A 229 LFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPG 308 (968)
T ss_dssp ECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSS
T ss_pred EEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCc
Confidence 665433 2222346777764 4788999999999654322 22111111111 3
Q ss_pred heeccCcch
Q psy2760 316 WTMASDATT 324 (333)
Q Consensus 316 l~~~~d~~~ 324 (333)
.++++++|.
T Consensus 309 ~L~LTATPi 317 (968)
T 3dmq_A 309 VLLLTATPE 317 (968)
T ss_dssp EEESCSSCS
T ss_pred EEEEEcCCc
Confidence 677778773
No 72
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.12 E-value=1.6e-11 Score=127.07 Aligned_cols=130 Identities=10% Similarity=-0.097 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCC-
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLP- 271 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~-l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~- 271 (333)
.++|+|+++++.+.+|++++++||||||||++|.++++.. ...+.+++|++|||+||.|+++.++. ..++ +.+..
T Consensus 171 ~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~--~~v~-~~~~~l 247 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG--LPIR-YQTPAV 247 (618)
T ss_dssp CCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEE-ECCTTS
T ss_pred cCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC--Ccee-Eecccc
Confidence 3455665567778999999999999999999999988854 35678999999999999999988752 1244 33332
Q ss_pred C--CCCCcceEEec--------------cCcceEeccccccccccCc-Ccccccchh--hhhhheeccCcchhh
Q psy2760 272 P--VFPDVEKLLED--------------LNIGGLDELSIHDFNKHLK-FWKPKVQLD--DLFDWTMASDATTLE 326 (333)
Q Consensus 272 ~--~~~~a~ili~t--------------~~i~liViDe~H~~~~~~R-~~~~~~~l~--~l~~l~~~~d~~~~e 326 (333)
. ..+...+.+.+ .++.++|+||+|.++.... .+....... ...+.+++|++..-+
T Consensus 248 ~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 248 KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 1 12222222222 3678899999999732110 011111111 224577888776544
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.12 E-value=2.3e-10 Score=116.27 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 192 PFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
+|.++++|.+++.. +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++.+
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHh
Confidence 46899999998765 478999999999999999999998764 367999999999999999999876
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.10 E-value=8.7e-11 Score=125.11 Aligned_cols=106 Identities=14% Similarity=0.032 Sum_probs=85.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgl 266 (333)
+++.|+++|..+++.+++|+ ++.+.||+|||++|.+|++.....|.++++++||+.||.|.++.+...+.. +++
T Consensus 76 lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~ 153 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGV 153 (997)
T ss_dssp TCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred hCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 56689999999999999998 899999999999999999755456788999999999999999888776542 788
Q ss_pred EeCCCCCCC-----CcceEEecc-------------------------CcceEecccccccc
Q psy2760 267 IDDLPPVFP-----DVEKLLEDL-------------------------NIGGLDELSIHDFN 298 (333)
Q Consensus 267 ltGd~~~~~-----~a~ili~t~-------------------------~i~liViDe~H~~~ 298 (333)
++|+.+... ...++++|+ ++.++|+||+|.+-
T Consensus 154 i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 154 IQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 898876321 235777664 35678889998653
No 75
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.09 E-value=9.6e-11 Score=124.74 Aligned_cols=106 Identities=11% Similarity=-0.058 Sum_probs=85.3
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgl 266 (333)
+++.|+++|..+++.+++|+ ++.++||+|||++|.+|++.....|.++++++||++||.|..+.+...+. .+++
T Consensus 108 lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~ 185 (922)
T 1nkt_A 108 LDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGV 185 (922)
T ss_dssp HSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 35579999999999999998 99999999999999999975444578999999999999999988766543 2788
Q ss_pred EeCCCCCCC-----CcceEEecc----------------------CcceEecccccccc
Q psy2760 267 IDDLPPVFP-----DVEKLLEDL----------------------NIGGLDELSIHDFN 298 (333)
Q Consensus 267 ltGd~~~~~-----~a~ili~t~----------------------~i~liViDe~H~~~ 298 (333)
++|+.+... ...++++|+ ++.++|+||++.+-
T Consensus 186 i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 186 ILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp CCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred EeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 888876432 135777764 35678999999664
No 76
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.91 E-value=1.5e-09 Score=115.04 Aligned_cols=116 Identities=13% Similarity=0.026 Sum_probs=80.5
Q ss_pred cCChhhhhhhhccccccccCCCCCCHHHHHHHHHH-HcCCcEEEEcCCCCcHHHHHHHHHH---HHhcC--CCeEEEEcc
Q psy2760 172 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIA---LSQNH--KTRTIYTSP 245 (333)
Q Consensus 172 ~L~~~l~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l-~~g~~vlv~apTGSGKTl~~~l~il---~~l~~--g~ral~l~P 245 (333)
++++.+...++..+ . .|.+.|++++..+ ..+++++++||||||||+. +|++ ..... +.++++++|
T Consensus 78 ~l~~~~~~~l~~r~-~------lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P 148 (773)
T 2xau_A 78 EFTPKYVDILKIRR-E------LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQP 148 (773)
T ss_dssp BCCHHHHHHHHHHT-T------SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEES
T ss_pred CCCHHHHHHHHHhh-c------CChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCc
Confidence 56667766665444 1 4777888888885 6778899999999999993 3333 12222 678999999
Q ss_pred cHHHHHHHHHHHHHhcCC-cEEEeC-----CCCCCCCcceEEecc--------------CcceEecccccc
Q psy2760 246 IKALSNQKYRDFRETFQD-VGLIDD-----LPPVFPDVEKLLEDL--------------NIGGLDELSIHD 296 (333)
Q Consensus 246 traLa~Q~~~~l~~~f~~-vglltG-----d~~~~~~a~ili~t~--------------~i~liViDe~H~ 296 (333)
+|+|+.|+.+++.+.++. ++...| +........+++.|+ ++.++|+||+|.
T Consensus 149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred hHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 999999999988776652 222112 112223456777765 578899999995
No 77
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.82 E-value=6.1e-09 Score=113.54 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=73.7
Q ss_pred CCCCHHHHHHHHHHHc--------------CCcEEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHH
Q psy2760 193 FELDVFQKQAIIKLEE--------------HNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYR 255 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~--------------g~~vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~PtraLa~Q~~~ 255 (333)
..|+++|.+|++.+.. +++++++++||||||++++. ++..+. ...++|||+|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~-l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFK-AARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHH-HHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHH-HHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3699999999998643 46899999999999999844 444332 23699999999999999999
Q ss_pred HHHHhcCCcEEEeCCCCC--------CCCcceEEecc-----------------CcceEecccccccc
Q psy2760 256 DFRETFQDVGLIDDLPPV--------FPDVEKLLEDL-----------------NIGGLDELSIHDFN 298 (333)
Q Consensus 256 ~l~~~f~~vglltGd~~~--------~~~a~ili~t~-----------------~i~liViDe~H~~~ 298 (333)
.|+. |.... +.|+.+. .....++++|+ ...++|+||+|...
T Consensus 349 ~f~~-f~~~~-v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 349 EYQR-FSPDS-VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHT-TSTTC-SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH
T ss_pred HHHH-hcccc-cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc
Confidence 9976 43311 1122111 12356777764 23578999999864
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1e-08 Score=108.74 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHH----HcCCcEEEEcCCCCcHHHHHHHHHHHH---hcCCCeEEEEcccHHHHHHHHHHHHHhcCC--
Q psy2760 193 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIKALSNQKYRDFRETFQD-- 263 (333)
Q Consensus 193 f~l~~~Q~~ai~~l----~~g~~vlv~apTGSGKTl~~~l~il~~---l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-- 263 (333)
..|+++|.+++.-+ ..+++++++.+||+|||+.++..+... .....++|+|+| .+|+.|+.++|.+.++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 37999999999765 488999999999999999987766533 244667999999 78999999999887755
Q ss_pred cEEEeCCCCC-------------------CCCcceEEecc-------------CcceEecccccccccc
Q psy2760 264 VGLIDDLPPV-------------------FPDVEKLLEDL-------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 264 vglltGd~~~-------------------~~~a~ili~t~-------------~i~liViDe~H~~~~~ 300 (333)
+.+++|+... .....+++.|. ...++|+||+|.+.+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc
Confidence 5666665431 12345777775 4578999999999644
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.81 E-value=7e-09 Score=107.37 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHH----HHcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 193 FELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 193 f~l~~~Q~~ai~~----l~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
|.+++.|.+++.. +..|+++++.||||+|||++|++|++... ..+.+++|++||++|+.|+.+++...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHH
Confidence 4789999999875 57899999999999999999999988554 35789999999999999999988663
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.68 E-value=3.1e-08 Score=102.60 Aligned_cols=106 Identities=17% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHH---------HcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-------CCeEEEEcccHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKL---------EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-------KTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 194 ~l~~~Q~~ai~~l---------~~g~~vlv~apTGSGKTl~~~l~il~~l~~-------g~ral~l~PtraLa~Q~~~~l 257 (333)
.|+|+|.+++..+ ..+..++++.+||+|||+.++..+...+.. ..++|+|+|+ +|+.|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 6999999999886 245678999999999999988777644332 2468999997 8999999999
Q ss_pred HHhcCC---cEEEeCCCCC---------------CCCcceEEecc-------------CcceEecccccccccc
Q psy2760 258 RETFQD---VGLIDDLPPV---------------FPDVEKLLEDL-------------NIGGLDELSIHDFNKH 300 (333)
Q Consensus 258 ~~~f~~---vglltGd~~~---------------~~~a~ili~t~-------------~i~liViDe~H~~~~~ 300 (333)
.+.++. +..+.|+... .....+++.|. ...++|+||+|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCCh
Confidence 886553 3344444321 11245777764 4578999999998654
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.10 E-value=6.2e-06 Score=84.98 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHH--HHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKT--VIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKT--l~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.+.|++|+..+..++.+++.|++|+||| +.++++.+... ..+.++++++||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 6899999999999999999999999999 55566666544 4567899999999999999877654
No 82
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.76 E-value=1.6e-05 Score=81.54 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC----cEEE
Q psy2760 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLI 267 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~----vgll 267 (333)
++.+++.|++|+..+..+..+++.||.|+|||.+....+......+.++++++||...+..+.+........ ++..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~ 266 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG 266 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEE
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCC
Confidence 557899999999999889999999999999998765444444467889999999998888776543110000 1111
Q ss_pred eCCCCCCCCcceEEeccCcceEecccccccccc
Q psy2760 268 DDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKH 300 (333)
Q Consensus 268 tGd~~~~~~a~ili~t~~i~liViDe~H~~~~~ 300 (333)
..+...+.. ......++++||+++++..
T Consensus 267 ~~~~~~~~~-----~~~~~dvlIIDEasml~~~ 294 (574)
T 3e1s_A 267 PQGFRHNHL-----EPAPYDLLIVDEVSMMGDA 294 (574)
T ss_dssp TTEESCSSS-----SCCSCSEEEECCGGGCCHH
T ss_pred cchhhhhhc-----ccccCCEEEEcCccCCCHH
Confidence 100000000 1124578899999998754
No 83
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.65 E-value=5.7e-05 Score=79.55 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=64.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcC----CcEE
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGL 266 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~----~vgl 266 (333)
.++.++..|......+..|+ +....||+|||+++.+|+......|..+.+++|++.||.|-.+.+...+. .||+
T Consensus 72 lg~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~ 149 (822)
T 3jux_A 72 LGMRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGV 149 (822)
T ss_dssp TSCCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEE
Confidence 45678999999888888887 88999999999999999875555688899999999999998877766543 3787
Q ss_pred EeC
Q psy2760 267 IDD 269 (333)
Q Consensus 267 ltG 269 (333)
++.
T Consensus 150 i~~ 152 (822)
T 3jux_A 150 INS 152 (822)
T ss_dssp EET
T ss_pred EcC
Confidence 776
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.64 E-value=0.00013 Score=75.48 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHcCC-cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~-~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.|++.|++|+..++..+ -.+|.||.|+|||.+....|.+....+.++++++||..=|+++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 68999999999876544 67999999999999988777777888999999999999999999998663
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.49 E-value=0.00028 Score=72.76 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.+++.|.+|+..+..+..+++.||+|+|||.+....+..... .+.++++++||..-++++.+++.+
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 689999999999887888999999999999987655544444 678999999999999999998865
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00043 Score=73.61 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.+++.|++|+..+..+..++|.||.|+|||.+....+..... .+.++++++||..-++++.+++.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 689999999999887778999999999999887655543333 6789999999999999999998763
No 87
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.32 E-value=0.00038 Score=70.95 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~----g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.+++-|++|+. ..+..++|.|+.|||||.+...-+...+.. ..+++++++|+..+.++.+++.+.++
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 58999999997 346789999999999999988776655443 25899999999999999999988654
No 88
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.22 E-value=0.00079 Score=66.56 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHH----c-CCcEEEEcCCCCcHHHHHHHHHHHHhcCCC-eEEEEcccHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLE----E-HNHVFVTAHTSAGKTVIAEYAIALSQNHKT-RTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~----~-g~~vlv~apTGSGKTl~~~l~il~~l~~g~-ral~l~PtraLa~Q~~~~l 257 (333)
.|++-|++|+..+. . ...+++.|+.|+|||.+....+......+. ++++++||...+..+.+.+
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 79999999999753 2 239999999999999877655544444554 7999999988887776554
No 89
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.21 E-value=0.00082 Score=71.48 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~-~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
.+++.|++|+..+..+...++.||.|+|||.+....+..... .+.++++++||..-++++.+++.+
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 689999999999888888999999999999886655544443 678999999999999999998865
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.14 E-value=0.00077 Score=70.08 Aligned_cols=69 Identities=28% Similarity=0.261 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHH----HcCC-cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 192 PFELDVFQKQAIIKL----EEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l----~~g~-~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+|.|++.|.+++..+ ..|. ..++.+.||||||+++...+... +..+|+|+|+..+|.|++.+|+..|++
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~~ 79 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFPE 79 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCCC
Confidence 568999999998874 3443 57789999999998876544322 346999999999999999999998765
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.94 E-value=0.0062 Score=62.27 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=58.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHH-HHh-cCCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 190 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il-~~l-~~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
..||.++++|+..+..+...+.+++..+-|+|||.+....++ ... .++.++++++|++..|.++++.++..+.
T Consensus 159 ~~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 159 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp SBBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 357899999999998876678899999999999998665433 233 4556899999999999999987766543
No 92
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.70 E-value=0.0025 Score=65.81 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|++-|++|+.. .+.+++|.|+.|||||.+...-+...+. ...++++++.|+..|.++.+++.+.++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 479999999874 3678999999999999998776654432 346899999999999999999988654
No 93
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.67 E-value=0.0027 Score=70.34 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhcCC------CeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK------TRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~~g------~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
..+++-|.+++.. .+.+++|.|+.|||||.+...-++..+..+ .+++++++|++.|.++.+++.+.++
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 3689999999875 378999999999999999887776655443 4799999999999999999877553
No 94
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.63 E-value=0.0036 Score=65.51 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~~l~----~g~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.|++-|++|+.. .+.+++|.|+.|||||.+...-+.+.+. ...++++++.|+..|.++.+++.+.++
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 589999999875 4578999999999999998876665543 235799999999999999999987654
No 95
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.51 E-value=0.0066 Score=63.00 Aligned_cols=69 Identities=29% Similarity=0.350 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHH----HcCC-cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 192 PFELDVFQKQAIIKL----EEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 192 ~f~l~~~Q~~ai~~l----~~g~-~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+|.|+..|.+++..+ ..|. ..++.+.||||||++....+.. . +..+|+|+|+..+|.|.+.+|+..|++
T Consensus 10 ~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~-~--~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 10 KYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKE-V--NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-H--CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHH-h--CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 678999999998864 3443 5778899999999876544322 2 346999999999999999999997765
No 96
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.04 E-value=0.02 Score=55.87 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHHHH-H-hcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2760 191 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-S-QNHKTRTIYTSPIKALSNQKYRDFRET 260 (333)
Q Consensus 191 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~il~-~-l~~g~ral~l~PtraLa~Q~~~~l~~~ 260 (333)
.||.++++|+..+..+...+.+++..+-+.|||.+....++. . ...+.++++++|++..|..+++.++..
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 578999999999988765677999999999999987665543 2 345678999999999999888776554
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.37 E-value=0.027 Score=47.64 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=40.2
Q ss_pred CHHHHHHHHHH---------HcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHH
Q psy2760 196 DVFQKQAIIKL---------EEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 196 ~~~Q~~ai~~l---------~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~PtraLa~Q~~~~l 257 (333)
++.|++++..+ ..|+.+++.||+|+|||..+....-... ..|..++|+ +..++..+....+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHLM 86 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHh
Confidence 56777777664 2578999999999999988765433322 456566654 4555555555444
No 98
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.82 E-value=0.056 Score=48.55 Aligned_cols=87 Identities=20% Similarity=0.152 Sum_probs=42.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
..+.+++++||+|+|||.++..........+...++ ++..++..+.... ..|+. -+.++|....... .+...+
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~-v~~~~~~~~~~~~--~l~g~~~~~~~g~~~~~~~---~l~~a~ 100 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS-LNCAALNENLLDS--ELFGHEAGAFTGAQKRHPG---RFERAD 100 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEE-EEGGGSCHHHHHH--HHHCCC---------CCCC---HHHHTT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEE-EecCCCChhHHHH--HhcCCcccccccccccccc---hhhhcC
Confidence 457899999999999998875533222222333444 4444443332221 23443 3444443322110 011123
Q ss_pred cceEeccccccccc
Q psy2760 286 IGGLDELSIHDFNK 299 (333)
Q Consensus 286 i~liViDe~H~~~~ 299 (333)
-+.+++||+|.+..
T Consensus 101 ~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 101 GGTLFLDELATAPM 114 (265)
T ss_dssp TSEEEEESGGGSCH
T ss_pred CcEEEEechHhcCH
Confidence 46788999998764
No 99
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.47 E-value=0.18 Score=41.44 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
..+++++||+|+|||.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5689999999999998876543
No 100
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.96 E-value=0.075 Score=46.47 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=35.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 258 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~ 258 (333)
.|..+++.||+|+|||..+...+......+.+++|+.-.. -..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 4788999999999999997765555555677888886432 2345554443
No 101
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.44 E-value=0.14 Score=43.79 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
++++++||+|+|||..+....-.....+.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78999999999999987654433444566666653
No 102
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.89 E-value=0.092 Score=47.25 Aligned_cols=41 Identities=17% Similarity=0.045 Sum_probs=33.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr 247 (333)
..|.-++++|++|+|||..++-.+......|.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 34667889999999999998887777777888999997764
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.81 E-value=0.13 Score=44.49 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=31.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr 247 (333)
.|+-.+++||.|+|||..++-.+......+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3667889999999999998766666666788899988873
No 104
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.73 E-value=0.085 Score=49.14 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=43.4
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
..+.+++++|++|+|||.++........+.+...+++ ...++...... .+.|+. -|.++|....... .+...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v-~~~~~~~~l~~--~~lfg~~~g~~tg~~~~~~g---~~~~a~ 96 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTL-NCAALNESLLE--SELFGHEKGAFTGADKRREG---RFVEAD 96 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEE-ECSSCCHHHHH--HHHTCCCSSCCC---CCCCC---HHHHHT
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEE-eCCCCChHHHH--HHhcCccccccCchhhhhcC---HHHhcC
Confidence 4567999999999999988765332222223333333 22222222221 134554 3444444331110 011123
Q ss_pred cceEeccccccccc
Q psy2760 286 IGGLDELSIHDFNK 299 (333)
Q Consensus 286 i~liViDe~H~~~~ 299 (333)
-+.+++||++.+..
T Consensus 97 ~g~L~LDEi~~l~~ 110 (304)
T 1ojl_A 97 GGTLFLDEIGDISP 110 (304)
T ss_dssp TSEEEEESCTTCCH
T ss_pred CCEEEEeccccCCH
Confidence 35678999998753
No 105
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.46 E-value=0.14 Score=44.08 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.+.+++++||+|+|||..+....-.....+.+++++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4679999999999999987654433333455555553
No 106
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.13 E-value=0.15 Score=47.60 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~ 244 (333)
+.++++.||+|+|||..+........ ..+.+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 68999999999999988765444444 5677777764
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.09 E-value=0.14 Score=44.85 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr 247 (333)
|+-.+++||.|||||..++-.+......+.+++++-|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 567788999999999988877777777889999998874
No 108
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.98 E-value=0.15 Score=49.31 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=34.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 251 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~ 251 (333)
..|+++.|+||||||......+.+.+..|.+++++=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 5799999999999999854344455667888888889888764
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.58 E-value=0.17 Score=43.47 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.|..+++.||+|+|||..+...+......+.+++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4788999999999999877654433334466777775
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.20 E-value=0.19 Score=41.79 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.|..+++.||+|+|||..+....-.....|.+++|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 5889999999999999876654433333455666654
No 111
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.05 E-value=0.22 Score=40.70 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.8
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+.++++.||+|+|||.++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHH
Confidence 56789999999999999988653
No 112
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.01 E-value=0.18 Score=41.19 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHcCCcEEEEcCCCCcHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~ 227 (333)
...+.++++.||+|+|||.++.
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHG
T ss_pred hCCCCcEEEECCCCccHHHHHH
Confidence 3567899999999999998764
No 113
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.92 E-value=0.42 Score=44.58 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=31.3
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
..|.-++++|++|+|||..++..+......+.+++|++-.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4578899999999999988777665555566789998743
No 114
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.79 E-value=0.16 Score=44.25 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~-~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
|.-++++|++|+|||..++-.+.. ....+..++|++-. .-..++.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHH
Confidence 778999999999999988765543 34556778887643 224455555543
No 115
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.35 E-value=0.37 Score=39.48 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
+.+++++||+|+|||.++....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4689999999999999875443
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.23 E-value=0.34 Score=45.32 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC------CCeEEEEcccHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH------KTRTIYTSPIKA 248 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~------g~ral~l~Ptra 248 (333)
.|..++++||+|+|||..+...+...... +.+++|+.-...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 46789999999999999987766554433 678999865543
No 117
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.22 E-value=0.27 Score=46.98 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=33.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
.+.++++.||||||||......+......+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 36799999999999998877666556667888888888765
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.12 E-value=0.5 Score=44.20 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHH----HcCC---cEEEEcCCCCcHHHHHHHHHH
Q psy2760 195 LDVFQKQAIIKL----EEHN---HVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 195 l~~~Q~~ai~~l----~~g~---~vlv~apTGSGKTl~~~l~il 231 (333)
++|||.+++..+ .+|+ .++++||.|+|||.++....-
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHH
Confidence 467787777664 3444 489999999999998876443
No 119
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.84 E-value=0.18 Score=50.05 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=34.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 259 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~ 259 (333)
-.++.|+.|+|||....-.+ . ..+.++++||+++++++.+++.+
T Consensus 163 v~~I~G~aGsGKTt~I~~~~----~-~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV----N-FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC----C-TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHh----c-cCCeEEEeCCHHHHHHHHHHhhh
Confidence 45889999999998764322 2 25679999999999998888854
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.70 E-value=0.32 Score=41.61 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
.|.-+++.||+|+|||..+...+. ..+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 467899999999999998766544 45678888753
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.62 E-value=0.27 Score=47.29 Aligned_cols=42 Identities=29% Similarity=0.236 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 250 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa 250 (333)
|.-+++.||+|+|||..+...+......+.+++|+.....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 678999999999999988776665556678899987654443
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.61 E-value=0.52 Score=46.69 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHh
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRET 260 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~ 260 (333)
+..++++|++|+|||..+.-.+......|.+++++. |.|.-+.++.+.+.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~ 153 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDR 153 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGG
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHh
Confidence 357889999999999987665544455678887775 6677666666666553
No 123
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.60 E-value=0.52 Score=43.83 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH-HHHhcCCCeEEEEc--ccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI-ALSQNHKTRTIYTS--PIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i-l~~l~~g~ral~l~--PtraLa~Q~~~~l~~ 259 (333)
++.+++.||+|+|||..+.... ......|.+++++. +.+.-+.++...+.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~ 158 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAE 158 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHH
Confidence 6788999999999998765533 33334677777763 445545544444433
No 124
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.36 E-value=0.53 Score=46.10 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHH--HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 195 LDVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 195 l~~~Q~~ai~~l--~~g~~vlv~apTGSGKTl~~~l 228 (333)
+.+-+..++..+ ..|..+++.||||||||...-.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 355566666665 3456789999999999987544
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.34 E-value=0.29 Score=46.91 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
|+.+++.|++|+|||..++..+......+.+++|+.....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6789999999999999998776666667788999876433
No 126
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.27 E-value=0.37 Score=45.91 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
|+-+++.||+|+|||..++..+......+.+++|+.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 78899999999999999888776666678889998644
No 127
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.25 E-value=0.4 Score=44.24 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
+.+++++||+|+|||..+....-.....+.+++|+.. ..+..+....+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~ 84 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DDFAQAMVEHL 84 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HHHHHHHHHHH
Confidence 4689999999999998876544333334667777653 33444444333
No 128
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.13 E-value=0.54 Score=47.26 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=24.2
Q ss_pred CCHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHH
Q psy2760 195 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 195 l~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~ 227 (333)
+.+.+..-+.. +..|.+++++||||||||...-
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 34444444444 4788899999999999998754
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.10 E-value=0.37 Score=42.03 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=26.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS 244 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~ 244 (333)
..|..+.+.||+|||||..+...+...+ ..+..++|+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3488999999999999998765443222 4455666654
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.77 E-value=0.73 Score=41.48 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=31.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
..|.-.+++||-|||||...+-.+......+.+++++-|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 346677889999999998776666666677889999988753
No 131
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.70 E-value=0.59 Score=46.13 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=35.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~ 259 (333)
+..++++||+|+|||..+...+......|.+++++. +.|.-+.++...+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHH
Confidence 467889999999999987664444445677887765 456555555555544
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.67 E-value=0.57 Score=40.66 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=27.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~P 245 (333)
.|.-+++.||+|+|||..+...+..... .+.+++|+.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4788999999999999988765543222 2567888753
No 133
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.35 E-value=0.49 Score=44.71 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=30.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEcccHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPIKA 248 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~Ptra 248 (333)
.|.-+++.||+|+|||..+...+..... .+.+++|+.-...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4678899999999999998776654333 4678999875543
No 134
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.17 E-value=0.58 Score=41.37 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.-.+++.+++|.|||.+++-..+.+...|.|++|+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458999999999999999998889999999999984
No 135
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.64 E-value=0.54 Score=45.23 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptr 247 (333)
|.-+++.|++|+|||..++..+......+.+++|+....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 678999999999999988876666556677899987543
No 136
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.49 E-value=0.99 Score=40.79 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcC----------CCeEEEEccc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNH----------KTRTIYTSPI 246 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~----------g~ral~l~Pt 246 (333)
.|.-+++.||+|+|||..+...+...... +.+++|+.-.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 48899999999999999877654322221 3568887643
No 137
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.38 E-value=0.97 Score=45.01 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
+.++++||+|+|||.++.... ..+ +..++.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la-~~l--~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVA-QEL--GYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHH-HHT--TCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHH-HHc--CCCEEEEeC
Confidence 689999999999998876433 222 556666643
No 138
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.27 E-value=0.34 Score=46.35 Aligned_cols=42 Identities=2% Similarity=0.014 Sum_probs=33.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSN 251 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~--g~ral~l~PtraLa~ 251 (333)
| .+++.+|.|+|||..++..+...... +.+++|+....++..
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 5 68999999999999998877655554 789999987666643
No 139
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.11 E-value=0.56 Score=41.45 Aligned_cols=82 Identities=12% Similarity=-0.033 Sum_probs=51.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc---HHHHHHHHHHHHHhcCCcEEEeCCCCCCCCcceEEecc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI---KALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLLEDL 284 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt---raLa~Q~~~~l~~~f~~vglltGd~~~~~~a~ili~t~ 284 (333)
.|+-.+++||.|||||...+-++-.....+.+++|+.|. |.- +.+..+...... ........ +... ...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~--A~~~~~~~-d~~~----~~~ 90 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTME--ALPACLLR-DVAQ----EAL 90 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSE--EEEESSGG-GGHH----HHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCccc--ceecCCHH-HHHH----hcc
Confidence 477789999999999988888877777778999999887 543 333333322111 11111110 0000 112
Q ss_pred CcceEeccccccc
Q psy2760 285 NIGGLDELSIHDF 297 (333)
Q Consensus 285 ~i~liViDe~H~~ 297 (333)
++.++.+||+|.+
T Consensus 91 ~~DvIlIDEaQFf 103 (195)
T 1w4r_A 91 GVAVIGIDEGQFF 103 (195)
T ss_dssp TCSEEEESSGGGC
T ss_pred CCCEEEEEchhhh
Confidence 4567889999988
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.82 E-value=1.1 Score=41.93 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=31.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~ 259 (333)
++.+++.+|+|+|||..+..........+.+++++. +.|.-+.++.+.+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGE 156 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHH
Confidence 567889999999999876553332233466776654 334444444444433
No 141
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.76 E-value=0.68 Score=45.58 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=31.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
..|.-++++|++|+|||..++-.+......|.+++|++-.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4577899999999999998877666555558889998643
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.61 E-value=0.77 Score=41.60 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+.+++++||+|+|||.++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 347999999999999988653
No 143
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.59 E-value=0.69 Score=41.44 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
|+-.+++|+-|||||..++-.+..+...+.+++++-|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 5566789999999999988888778888999999988754
No 144
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.55 E-value=0.57 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|..+++.||||||||...-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHH
Confidence 4578899999999999987654
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.48 E-value=1.1 Score=41.57 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcC--------CCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNH--------KTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~--------g~ral~l~ 244 (333)
.+.++++||+|+|||..+....-..... +..++++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4579999999999999875543322111 56667664
No 146
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.31 E-value=0.79 Score=41.70 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHH-HhcCCCeEEEEc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTS 244 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~-~l~~g~ral~l~ 244 (333)
..|.-+++.||+|+|||..+...+.. ....|.+++|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45889999999999999887654433 333465787764
No 147
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.90 E-value=0.51 Score=39.86 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.|+-++++||+|||||...-...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999876543
No 148
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.86 E-value=0.81 Score=38.45 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.+..++++|+.|||||.++....-.....+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 367899999999999998766443333345555544
No 149
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.78 E-value=0.56 Score=53.71 Aligned_cols=47 Identities=21% Similarity=0.140 Sum_probs=40.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 254 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~ 254 (333)
.|+.+.+.+|.|||||..++..+..+...|.+++|+.+-.+|.....
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~ 1476 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 1476 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHH
Confidence 46889999999999999999999888888999999998877766653
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.61 E-value=0.94 Score=38.85 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEccc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPI 246 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~Pt 246 (333)
.|.-+.+.||+|||||..+...+-.... .+.+++|+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 5778999999999999887654432221 24567777543
No 151
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.95 E-value=0.59 Score=40.50 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.|+-++++||+|||||.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHH
Confidence 47789999999999999876543
No 152
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.92 E-value=0.8 Score=40.29 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+.-|..++..+..|..+.+.||+|||||...-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 345677888889999999999999999988655
No 153
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.88 E-value=0.89 Score=44.76 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.+++++||+|+|||.++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 37999999999999987653
No 154
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.72 E-value=1 Score=40.76 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.++++.||+|+|||.++....-.....+...+++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999999998865433333333334443
No 155
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.69 E-value=1 Score=42.91 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=31.1
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
..|.-+++.|++|+|||..++-.+......+.+++|++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 457789999999999999887766555557888999864
No 156
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.45 E-value=0.5 Score=39.51 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
++.++++|++|||||.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999887543
No 157
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.37 E-value=1.3 Score=41.02 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.+.+++++||+|+|||..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999876543
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.35 E-value=0.66 Score=39.70 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
..++.++++|++|||||.++....
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999999986543
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.33 E-value=0.73 Score=53.56 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=35.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraL 249 (333)
.++++++++|+|+|||..+...+..+...|.+++|+....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 378999999999999999988777777788999999866443
No 160
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.16 E-value=0.78 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=18.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..|..++++||||||||...-..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l 156 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASM 156 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 45778999999999999876543
No 161
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.07 E-value=0.58 Score=41.05 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh-----cCCCeEEEEccc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ-----NHKTRTIYTSPI 246 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l-----~~g~ral~l~Pt 246 (333)
.-.+++|+.|||||..+..-+.... ..|.+.+|++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~ 47 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNI 47 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecC
Confidence 3578999999999998765444332 344366665544
No 162
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.80 E-value=1.2 Score=41.20 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh------------cCC----CeEEEEcccHHH-HHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ------------NHK----TRTIYTSPIKAL-SNQKYRDF 257 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l------------~~g----~ral~l~PtraL-a~Q~~~~l 257 (333)
|.-++++|++|+|||..+...+.... ..| .+++|+.-...+ ..++.+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 67899999999999998877655421 223 688988755433 33444333
No 163
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.62 E-value=2 Score=35.60 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=21.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.++++|+.|||||..+-...-..-..|..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 578999999999998865443222234445444
No 164
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.59 E-value=1.1 Score=43.70 Aligned_cols=40 Identities=15% Similarity=-0.008 Sum_probs=30.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEccc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPI 246 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~Pt 246 (333)
..|.-++++|++|+|||..++..+.... ..+.+++|++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4567889999999999988876555444 357789988643
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.58 E-value=2 Score=39.84 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS 244 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~ 244 (333)
+++++||+|+|||..+....-..... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 79999999999999876543333333 45667664
No 166
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=83.58 E-value=0.73 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+..|..++++||||||||...-.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHHH
Confidence 47899999999999999987654
No 167
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.47 E-value=0.56 Score=38.02 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
..++++||+|||||.++...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999988654
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.47 E-value=0.7 Score=39.12 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=19.4
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..|..+++.||+|||||..+-..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 45788999999999999987653
No 169
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.47 E-value=2 Score=42.82 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~ 263 (333)
+....+.+-||||||++....+. ..+..+++|+|+...|.|+++.|+..++.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCeEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 67889999999999986543331 23556899999999999999999886654
No 170
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.43 E-value=0.59 Score=40.68 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
++|.|++|||||..+.-.. .. +.+++|++.....-.++.+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la---~~-~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI---GD-APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH---CS-CSSEEEEECCCC------CHH
T ss_pred EEEECCCCCcHHHHHHHHH---hc-CCCeEEEecCCCCCHHHHHHH
Confidence 6899999999998887533 22 667899987555444444333
No 171
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=83.40 E-value=0.77 Score=38.87 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.|.-+.+.||+|||||...-..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 5788999999999999987653
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.35 E-value=1.4 Score=43.02 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=30.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~PtraLa~Q~~~~l 257 (333)
+.+++++||+|+|||..+....-... ..+.+++|+... .+..+....+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~~~ 179 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVDSM 179 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHHHH
Confidence 46899999999999988754332222 236677776543 3444444433
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.18 E-value=0.73 Score=39.68 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.|+.+.+.||+|||||...-..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4788999999999999987654
No 174
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.15 E-value=1.1 Score=42.18 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.+++++||+|+|||.++...
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4578999999999999987653
No 175
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.12 E-value=0.63 Score=38.53 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
++.++++|+.|||||.++-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 567899999999999988653
No 176
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.07 E-value=0.64 Score=42.89 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.1
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+..+.++++.||+|+|||..+..
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHcCCeEEEECCCCCcHHHHHHH
Confidence 56789999999999999988754
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.90 E-value=1.2 Score=43.50 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=30.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHh-cCCCeEEEEcc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSP 245 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l-~~g~ral~l~P 245 (333)
..|.-+++.|++|+|||..+...+.... ..|.+++|+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4678899999999999998876555443 35678888864
No 178
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.67 E-value=1.5 Score=42.72 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhc------CCCeEEEEccc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPI 246 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~------~g~ral~l~Pt 246 (333)
.|.-+.+.||.|+|||..+...++.... .+.+++|+.-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 5678999999999999988754433322 35678888543
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=82.65 E-value=1 Score=43.12 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=17.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..+..++++||||||||...-.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~ 142 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4556899999999999987654
No 180
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.60 E-value=0.66 Score=44.39 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
++.++++||||||||.++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999876543
No 181
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=82.59 E-value=1.9 Score=40.62 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE-ccc-HHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT-SPI-KALSNQKYRDFRE 259 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l-~Pt-raLa~Q~~~~l~~ 259 (333)
.|.-+.+.||+|||||.......-.....+.++++. .++ +.-+.++...+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~ 181 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAK 181 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHH
Confidence 467889999999999987654333223345566554 233 3334444555544
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.53 E-value=1.5 Score=40.96 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
|..+.+.||+|||||.......-.....+.++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 67889999999999987655333222345566654
No 183
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.34 E-value=1.4 Score=37.62 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
..|..+.+.||.|||||.++-...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457789999999999999876543
No 184
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.19 E-value=1 Score=44.45 Aligned_cols=39 Identities=5% Similarity=-0.075 Sum_probs=31.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEcc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSP 245 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~P 245 (333)
..|.-+++.|++|+|||..++-.+...... |.+++|++-
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 457789999999999999887766655554 778999864
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.14 E-value=2.5 Score=38.60 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=28.2
Q ss_pred CHHHHHHHHHH-HcCC---cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 196 DVFQKQAIIKL-EEHN---HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 196 ~~~Q~~ai~~l-~~g~---~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
.....+.+..+ ..++ .+++.+|+|+|||.++.... ..+ +...+++.+.
T Consensus 31 ~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la-~~l--~~~~~~i~~~ 82 (324)
T 3u61_B 31 PAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC-HDV--NADMMFVNGS 82 (324)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHH-HHT--TEEEEEEETT
T ss_pred cHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHH-HHh--CCCEEEEccc
Confidence 34444445443 3343 45777889999998876532 222 4556666554
No 186
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.05 E-value=1.5 Score=39.71 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
++++.++.|+|||..+..........|.+++++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 689999999999999776555555667776543
No 187
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.05 E-value=1.3 Score=41.66 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHh--cCCcEEE-eCC
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRET--FQDVGLI-DDL 270 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~--f~~vgll-tGd 270 (333)
++-+++.+++|+|||..+..........+.+++++- +.+.-+.+....+.+. ..+++++ .+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 667889999999999876553332334567777763 3344333333344220 2246777 444
No 188
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=82.01 E-value=1.3 Score=40.16 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 248 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Ptra 248 (333)
.|+-.+++|+-|||||..++-.+..+...|.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 36677888988999999988888888888999999988753
No 189
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.97 E-value=1.8 Score=39.79 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcC---CCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~---g~ral~l~ 244 (333)
+..++++||+|+|||..+....-..... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5689999999999999876533222221 45666664
No 190
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.96 E-value=0.87 Score=37.48 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..+++.||.|||||.++-..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3578999999999999987653
No 191
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.75 E-value=0.91 Score=45.52 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.1
Q ss_pred HHHHHHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 202 AIIKLEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 202 ai~~l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+...+..+.+++++||+|+|||..+..
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 334457899999999999999988754
No 192
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.72 E-value=0.98 Score=38.75 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=19.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
..|+.++++||+|||||.++-...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999876543
No 193
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=81.72 E-value=0.79 Score=38.40 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.1
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..|..+++.||.|||||..+-..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45778999999999999987543
No 194
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.63 E-value=1.9 Score=35.98 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
.+++++||+|+|||..+....
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999998875533
No 195
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=81.61 E-value=1.7 Score=40.31 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~ 259 (333)
++.+++.+++|+|||..+..........+.+++++. +.|..+.++.+.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 567788999999999876554333334566777653 345555554444443
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.60 E-value=2.4 Score=41.59 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRE 259 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~ 259 (333)
++.+++++++|+|||..+..........+.+++++. +.+..+.++...+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~ 150 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGE 150 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcc
Confidence 567888899999999876654433334567777654 455555554444443
No 197
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.52 E-value=0.77 Score=38.19 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..++++|+.|||||.++-...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999876533
No 198
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.38 E-value=0.79 Score=38.75 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..++++|+.|||||.++-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999997653
No 199
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.29 E-value=0.83 Score=38.09 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.++.++++|+.|||||.++...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHH
Confidence 3678999999999999988653
No 200
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.03 E-value=0.8 Score=40.27 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++||+|+|||.++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999887643
No 201
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=80.90 E-value=0.71 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=16.0
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.++++||+|||||.++...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999987653
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.74 E-value=0.8 Score=41.07 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.++.++++||+|+|||.++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 4678999999999999887543
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.70 E-value=1.1 Score=40.38 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.+++++||+|+|||.++...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3678999999999999887643
No 204
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.63 E-value=1.6 Score=40.70 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.|..+.+.||+|||||.......-.....+.++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3678899999999999876553322223456666653
No 205
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.58 E-value=2.2 Score=41.80 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=30.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEEc--ccHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS--PIKALSNQKYR 255 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~-g~ral~l~--PtraLa~Q~~~ 255 (333)
+.+++++++|+|||.++.-........ |.+++++. |.|..+.++..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 577888999999998876644433444 78887764 44554444433
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=80.54 E-value=0.92 Score=42.74 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHcCCcEEEEcCCCCcHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~ 227 (333)
+..|..+++.||||||||...-
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHH
Confidence 4689999999999999998543
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.51 E-value=1 Score=40.65 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
++.++++||+|+|||.++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 578999999999999987643
No 208
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.48 E-value=1.1 Score=37.85 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
++-+.+.||+|||||.+.-..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 356789999999999987553
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.31 E-value=1 Score=41.91 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
+++++++||+|+|||.++....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999876543
No 210
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.17 E-value=1.7 Score=36.55 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=22.4
Q ss_pred CHHHHHHHHH-HHcCC---cEEEEcCCCCcHHHHHHHH
Q psy2760 196 DVFQKQAIIK-LEEHN---HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 196 ~~~Q~~ai~~-l~~g~---~vlv~apTGSGKTl~~~l~ 229 (333)
+..+.+.+.. +..++ .++++||+|+|||..+...
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3334444443 34444 6899999999999887543
No 211
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.13 E-value=0.91 Score=43.14 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
++-++++||||||||.++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 3457889999999998876543
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.82 E-value=1.1 Score=41.11 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.++.++++||+|+|||..+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 467899999999999998764
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.66 E-value=1.2 Score=38.85 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=18.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|+-+.+.||+|||||...-.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 5688999999999999987755
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.61 E-value=2 Score=35.69 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.|..+++.|+.|||||.++-..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678899999999999987653
No 215
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.58 E-value=1.9 Score=36.94 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+.-+.+.|+.|||||.++....-.....+..++++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 45688999999999998765332222234445544
No 216
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.54 E-value=1.7 Score=41.17 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhc---C---CCeEEEEcc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQN---H---KTRTIYTSP 245 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~---~---g~ral~l~P 245 (333)
.|.-+.+.||+|||||..+...+..... . +.+++|+.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 5678899999999999998775543321 2 357788753
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.45 E-value=1.3 Score=39.00 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.|+-++++||+|+|||...-..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 48889999999999999876543
No 218
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.44 E-value=1 Score=42.65 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
+-++++||||||||..+....
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 357889999999998876543
No 219
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=79.19 E-value=0.85 Score=38.24 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|.-+.++||+|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 477889999999999998873
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.15 E-value=0.97 Score=40.03 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++||+|+|||..+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 457999999999999887543
No 221
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.03 E-value=0.73 Score=38.43 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.|..++++|+.|||||.++-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668999999999999987654
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.95 E-value=2 Score=36.91 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++.. ..+..|..++++|+.|||||..+-..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 4444443 22456778999999999999987653
No 223
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.90 E-value=0.89 Score=37.65 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
|..++++|+.|||||.++-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 66889999999999998765
No 224
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.85 E-value=1.8 Score=50.34 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=33.6
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
..|+++++++|+|+|||..+...+..+...|.+++|+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit 1116 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1116 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 36789999999999999999888877888899999986
No 225
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.67 E-value=1.1 Score=37.57 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+..++++|+.|||||.++-..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 345678999999999999987553
No 226
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.60 E-value=1.1 Score=39.99 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.|+-+++.||||+|||..+...+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 36779999999999997765543
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.52 E-value=1 Score=36.67 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.++++|+.|||||.++-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999988653
No 228
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.49 E-value=0.99 Score=37.09 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
..++++|+.|||||.++...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 35789999999999987553
No 229
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=78.41 E-value=2.2 Score=42.48 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=33.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l 257 (333)
..|..+++.||+|+|||..+...+-.....|.+++|+++... ..|+....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHH
Confidence 467889999999999999876644333335677888876532 23444443
No 230
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.14 E-value=1.2 Score=39.75 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.+++++||+|+|||.++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 57999999999999987643
No 231
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=78.13 E-value=1.2 Score=37.34 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+..++++|+.|||||.++-..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999987653
No 232
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.13 E-value=1.5 Score=37.46 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=18.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..|..+++.||.|||||.++-..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35788999999999999987653
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.91 E-value=1.5 Score=37.67 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 205 KLEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 205 ~l~~g~~vlv~apTGSGKTl~~~l 228 (333)
.+..|+-+.+.||+|||||..+-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
Confidence 456789999999999999988754
No 234
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=77.90 E-value=1 Score=42.49 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
.+.+++++||+|+|||.+....+-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999998876554
No 235
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.89 E-value=2.8 Score=35.45 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.+..++++|+.|||||.++-...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999987644
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=77.50 E-value=1 Score=37.47 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
+..++++|+.|||||.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999998754
No 237
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=77.34 E-value=3.9 Score=44.99 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=41.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhc-CC-----------CeEEEEcccHHHHHHHHHHHHHhcC
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQN-HK-----------TRTIYTSPIKALSNQKYRDFRETFQ 262 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~-~g-----------~ral~l~PtraLa~Q~~~~l~~~f~ 262 (333)
.+.+|.|+-|||||.+-..-++..+. .| .++|+|+=|++=|.++.+++++++.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 34599999999999887766665442 21 3799999999999999999887654
No 238
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=77.28 E-value=2.6 Score=43.84 Aligned_cols=60 Identities=27% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHc--CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHH
Q psy2760 194 ELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRD 256 (333)
Q Consensus 194 ~l~~~Q~~ai~~l~~--g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~ 256 (333)
.++..|.+|+..+.. ....++.|+-|.|||.+..+++.... .++++.+|+.+=+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHHH
Confidence 589999999998743 33579999999999987777765543 2468899998866655443
No 239
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=77.26 E-value=2.3 Score=39.31 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhcCCcEEEeCCCCCCCCc--ceEEec-
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLIDDLPPVFPDV--EKLLED- 283 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~--PtraLa~Q~~~~l~~~f~~vglltGd~~~~~~a--~ili~t- 283 (333)
++.+.+.+++|+|||..+..........+.+++++- +.+..+..+...+.+.. ++.++.++...++.. +..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~-~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccC-CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 677888899999999876553333334466777653 34444443333333322 244444332222111 001111
Q ss_pred --cCcceEeccccccc
Q psy2760 284 --LNIGGLDELSIHDF 297 (333)
Q Consensus 284 --~~i~liViDe~H~~ 297 (333)
.+..++++|++...
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 24567778888543
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=77.18 E-value=1.5 Score=37.99 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
|.++++||.|+|||.+.-..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 568999999999998865443
No 241
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=77.08 E-value=2.4 Score=37.97 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+..++++|+.|||||..+....-.....|..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 45789999999999998765433222234444433
No 242
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=77.07 E-value=2.4 Score=40.60 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=47.8
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
....++++++++|+||+.++...-... ....+..+.+..-++..+.... +.||. -|.+||....... .+...+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s-~r~~~~fv~v~~~~~~~~~~~~--elfg~~~g~~tga~~~~~g---~~~~a~ 231 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLS-DRSKEPFVALNVASIPRDIFEA--ELFGYEKGAFTGAVSSKEG---FFELAD 231 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHS-TTTTSCEEEEETTTSCHHHHHH--HHHCBCTTSSTTCCSCBCC---HHHHTT
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhc-CCCCCCeEEEecCCCCHHHHHH--HhcCCCCCCCCCcccccCC---ceeeCC
Confidence 456789999999999998775432222 2223344445555554444432 45664 3455665433221 112234
Q ss_pred cceEecccccccc
Q psy2760 286 IGGLDELSIHDFN 298 (333)
Q Consensus 286 i~liViDe~H~~~ 298 (333)
-+.+.+||++.+.
T Consensus 232 ~gtlfldei~~l~ 244 (387)
T 1ny5_A 232 GGTLFLDEIGELS 244 (387)
T ss_dssp TSEEEEESGGGCC
T ss_pred CcEEEEcChhhCC
Confidence 4667788888765
No 243
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.97 E-value=1.2 Score=41.27 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++||+|+|||.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999887643
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.92 E-value=2.2 Score=40.83 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=34.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc-cc-HHHHHHHHHHHHHhcCCcEEEeC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS-PI-KALSNQKYRDFRETFQDVGLIDD 269 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~-Pt-raLa~Q~~~~l~~~f~~vglltG 269 (333)
.|..+.+.||+|||||.......-.....+.++++.. ++ |.-+.++...+..+ ..++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r-~~i~~v~q 218 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAER-TGCEIVVA 218 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHH-HTCEEECC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHh-cCeEEEEe
Confidence 3678899999999999976553322223456666653 33 33233333344221 13566543
No 245
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.87 E-value=2.2 Score=48.89 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEccc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~Pt 246 (333)
|..+++++|+|+|||..+...+......|.+++|+.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEec
Confidence 78999999999999999888777667778899998643
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.63 E-value=1.1 Score=37.32 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..++++|+.|||||.++-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999987653
No 247
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.54 E-value=1.6 Score=41.10 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
...+++++||+|+|||.++...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH
Confidence 3568999999999999887653
No 248
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=76.51 E-value=2.9 Score=35.73 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=21.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
-+.++|+.|||||......+-.....|.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999876543332224455544443
No 249
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.45 E-value=1.4 Score=42.04 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.++++||||||||.++...
T Consensus 9 lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHH
Confidence 6889999999999987653
No 250
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=76.34 E-value=1.4 Score=42.09 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=47.0
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCC-cEEEeCCCCCCCCcceEEeccC
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLIDDLPPVFPDVEKLLEDLN 285 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~-vglltGd~~~~~~a~ili~t~~ 285 (333)
.....+++.|++|+||+.++...-....+.+. .+.+..-++-.+... .+.||. -|.+||....... .+...+
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~--fv~vnc~~~~~~~~~--~~lfg~~~g~~tga~~~~~g---~~~~a~ 222 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLIHRYSGRKGA--FVDLNCASIPQELAE--SELFGHEKGAFTGALTRKKG---KLELAD 222 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC--EEEEESSSSCTTTHH--HHHHEECSCSSSSCCCCEEC---HHHHTT
T ss_pred ccchhheEEeCCCchHHHHHHHHHHhccccCC--cEEEEcccCChHHHH--HHhcCccccccCCcccccCC---hHhhcC
Confidence 45678999999999999887654333323322 444444333322221 234553 3555554432211 112234
Q ss_pred cceEeccccccccc
Q psy2760 286 IGGLDELSIHDFNK 299 (333)
Q Consensus 286 i~liViDe~H~~~~ 299 (333)
-+.+.+||+|.+..
T Consensus 223 ~gtlfldei~~l~~ 236 (368)
T 3dzd_A 223 QGTLFLDEVGELDQ 236 (368)
T ss_dssp TSEEEEETGGGSCH
T ss_pred CCeEEecChhhCCH
Confidence 46678899998753
No 251
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.32 E-value=1.4 Score=41.68 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
+.++++||||||||.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999876543
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=76.29 E-value=3.3 Score=35.03 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.+..++++|+.|||||.++-...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 36789999999999999986644
No 253
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.10 E-value=2.2 Score=40.00 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=19.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..|..+.+.||+|||||....+.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 57889999999999999887553
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=75.91 E-value=1.8 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l 228 (333)
+..|+-+++.||.|||||...-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 45688999999999999998765
No 255
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.81 E-value=1.4 Score=40.51 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.+++++||+|+|||.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999987654
No 256
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.70 E-value=1.6 Score=40.54 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++||+|+|||..+...
T Consensus 45 ~~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHH
Confidence 368999999999999887643
No 257
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.55 E-value=1.3 Score=38.77 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=15.7
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
..|.-+.+.||+|||||.+.-...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999998876533
No 258
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.45 E-value=3.3 Score=34.48 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 242 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~ 242 (333)
-+++.|+.|||||.++....-.....|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999987644332233555543
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.40 E-value=2.8 Score=35.97 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||..+-.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~ 41 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNP 41 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 366888999999999987644
No 260
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=75.37 E-value=1.6 Score=42.87 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
..++++|++|+|||..+..........|.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57899999999999877654443334567777764
No 261
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.35 E-value=1.5 Score=36.89 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.|+.+++.|+.|||||.++-...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999986543
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.31 E-value=4.9 Score=33.70 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.+..+++.|+.|||||.++....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999999886644
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=75.05 E-value=1.5 Score=37.47 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||.++-.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 456788999999999998754
No 264
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=74.97 E-value=2.5 Score=46.27 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=34.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETF 261 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~---~g~ral~l~PtraLa~Q~~~~l~~~f 261 (333)
-+|.|+.|||||.+...-|...+. .+.+++++||.+.-- ++.+++.+.+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TF-t~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTF-LMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHH-HHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccH-HHHHHHHHhh
Confidence 378899999999999887764432 347899999987433 3445554433
No 265
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.81 E-value=1.7 Score=39.80 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.++++||+|+|||..+...
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 57899999999999987653
No 266
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.70 E-value=1.5 Score=38.09 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..+++.|+.|||||.++-..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999987553
No 267
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.54 E-value=1.7 Score=36.23 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
..++++|+.|||||.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999988653
No 268
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.45 E-value=1.2 Score=40.57 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+++++||+|+|||.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 478999999999999987653
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=74.20 E-value=1.5 Score=36.79 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
|..+++.||.|||||..+-..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 346789999999999987654
No 270
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.06 E-value=1.7 Score=36.98 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++|+.|||||.++-..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 357999999999999987653
No 271
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.02 E-value=2 Score=40.52 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+.++++||+|+|||.++..
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46899999999999998764
No 272
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.00 E-value=4 Score=33.73 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.6
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
.++++|+.|||||.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999886543
No 273
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.94 E-value=1.7 Score=36.82 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..++++|+.|||||.++-...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999876543
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=73.92 E-value=1.7 Score=37.48 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..+++.|+.|||||.++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999987653
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.85 E-value=1.6 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.||.|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999988653
No 276
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.77 E-value=1.9 Score=42.06 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
+++++++||+|+|||..+..
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 46899999999999998864
No 277
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.61 E-value=0.92 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
|..+++.||+|+|||..+...+.. .+.+++|+.-
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 567899999999999887765433 3445555543
No 278
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.24 E-value=3 Score=41.88 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
|..+.+.|++|||||.......-.....++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 45688999999999987655333223445667665
No 279
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=73.20 E-value=1.8 Score=35.42 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.++++|+.|||||.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999987653
No 280
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.12 E-value=2.2 Score=40.24 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++||+|+|||.++...
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999987653
No 281
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.09 E-value=1.7 Score=41.36 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.++++++||+|+|||.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 579999999999999887653
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=72.98 E-value=1.8 Score=35.83 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.++++|+.|||||.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999987653
No 283
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=72.96 E-value=2.6 Score=40.09 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.3
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-.+++||||||||.++..
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 567899999999988754
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.91 E-value=4.7 Score=40.38 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
+.+++++++|+|||..+...+......|.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 478889999999999876655444445777777653
No 285
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=72.89 E-value=1.8 Score=36.94 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..+.+.|++|||||.++...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999987653
No 286
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.80 E-value=0.9 Score=40.39 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+.++++||+|+|||.++...
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 457999999999999987653
No 287
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=72.70 E-value=3 Score=41.47 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH-HHhcCCCeEEEEc
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTS 244 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il-~~l~~g~ral~l~ 244 (333)
.|..+++.||+|||||..+..-++ -....+...+|+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 488999999999999998876433 2223245567764
No 288
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=72.66 E-value=2.3 Score=37.47 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
+.+++.||+|+|||..+-.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999987754
No 289
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.59 E-value=1.9 Score=42.24 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
-++++||||||||.++....
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 47889999999998876543
No 290
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.44 E-value=2.9 Score=38.21 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.+++++||+|+|||..+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56999999999999887543
No 291
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.26 E-value=3.4 Score=42.97 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=17.1
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
+++++||||+|||.++....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999886543
No 292
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=72.26 E-value=2.2 Score=36.68 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+.+.||+|||||.++-+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 356889999999999987653
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.02 E-value=2.2 Score=36.60 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.4
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.||.|||||.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999988653
No 294
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.94 E-value=3.1 Score=38.50 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=18.8
Q ss_pred HHcCCc--EEEEcCCCCcHHHHHHHH
Q psy2760 206 LEEHNH--VFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 206 l~~g~~--vlv~apTGSGKTl~~~l~ 229 (333)
+..|+- ++++||.|+|||..+...
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHH
Confidence 355553 999999999999887653
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.66 E-value=1.6 Score=40.14 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+.-++++||.|||||.++-..
T Consensus 33 ~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999987653
No 296
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=71.61 E-value=4 Score=41.07 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
.+-+++++..|.|||.++..........|.|+++|.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 456788999999999998765554445688888863
No 297
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=71.61 E-value=3.6 Score=36.97 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHH-HHcCC--cEEEEcCCCCcHHHHHHHH
Q psy2760 197 VFQKQAIIK-LEEHN--HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 197 ~~Q~~ai~~-l~~g~--~vlv~apTGSGKTl~~~l~ 229 (333)
....+.+.. +..++ +++++||+|+|||.++...
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 333344433 33443 7999999999999887653
No 298
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.55 E-value=1.1 Score=41.29 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
...+++++||+|+|||.++...
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHH
Confidence 4568999999999999887653
No 299
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.41 E-value=4.1 Score=41.30 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..|..+++.||+|+|||..+...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHH
Confidence 578899999999999999987653
No 300
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.30 E-value=2.7 Score=36.23 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+++.|+.|||||.++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467999999999999988654
No 301
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=71.24 E-value=2.4 Score=34.79 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.++++.|+.|||||.++-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 58999999999999998654
No 302
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=71.07 E-value=6.7 Score=36.51 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.7
Q ss_pred CCcEEE--EcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFV--TAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv--~apTGSGKTl~~~l~i 230 (333)
+..+++ +||.|+|||..+....
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH
Confidence 457888 9999999999876544
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.00 E-value=2 Score=36.34 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+.+.|+.|||||.++-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5789999999999987653
No 304
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=70.98 E-value=5 Score=34.30 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=23.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
+....+|+|||.++........+.|.|++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 345568999999887655444456888888754
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.84 E-value=2 Score=35.54 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.++++|+.|||||.++...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999987653
No 306
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.81 E-value=2.5 Score=34.47 Aligned_cols=19 Identities=11% Similarity=0.438 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.|+.|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5889999999999987653
No 307
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.13 E-value=2.5 Score=41.61 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+.+|++||+|+|||+.+-.
T Consensus 215 prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHH
Confidence 57899999999999988754
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=69.84 E-value=2.1 Score=36.26 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+.++++|+.|||||.++-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34689999999999998744
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=69.75 E-value=1.6 Score=36.07 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..++++|+.|||||.++...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567999999999999987653
No 310
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.72 E-value=2.3 Score=35.55 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.|+.|||||..+-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 5789999999999987653
No 311
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=69.58 E-value=4.1 Score=35.10 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+.+++..|+|||.++..........|.|++++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 55688999999999877555445667888876
No 312
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=69.38 E-value=3.9 Score=43.27 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=22.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.+++++||||+|||.++....-...+.+...+++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 3799999999999998765433333333344443
No 313
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=69.24 E-value=5.3 Score=35.02 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=24.5
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEE
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 242 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~ 242 (333)
..|..+++.|+.|||||.......-.....|..++.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 357789999999999999886654333334444443
No 314
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=69.18 E-value=3.7 Score=37.59 Aligned_cols=50 Identities=10% Similarity=-0.104 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 258 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~ 258 (333)
.|..+++.+.+|+|||..+..-+...+..|-+++|++-. +-..++.+.++
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~ 69 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILS 69 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHH
Confidence 467889987888888744444444566778899998632 33344444443
No 315
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.17 E-value=2.9 Score=38.90 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.++++.||+|+|||..+-..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 68999999999999987653
No 316
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=68.95 E-value=4.9 Score=37.31 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=25.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
+-++.++..|.|||.++..........|.|++++-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 35677899999999998765554445688888764
No 317
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.82 E-value=2.3 Score=41.65 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+-+|++||.|+|||+.+-..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHH
Confidence 3578999999999999987643
No 318
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=68.47 E-value=3 Score=36.03 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+++.|+.|||||..+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987654
No 319
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.35 E-value=3.3 Score=37.19 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
+.+++.||+|+|||..+-.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHH
Confidence 4599999999999987654
No 320
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=68.35 E-value=5.9 Score=36.91 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+-+++++..|.|||.++..........|.|++++
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3467789999999988766554444668888876
No 321
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=68.29 E-value=3.6 Score=37.18 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=19.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.|+.+++.|+.|||||.++-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3899999999999999997654
No 322
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=68.22 E-value=2.1 Score=36.29 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
-+++.|+.|||||..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999876543
No 323
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=68.15 E-value=2.7 Score=37.39 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~ 50 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNI 50 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 488999999999999986543
No 324
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.14 E-value=3.5 Score=36.01 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+..+++.|+.|||||..+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999987654
No 325
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=68.04 E-value=3.5 Score=41.45 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il 231 (333)
.+.++++.|+||||||.+....+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999988655443
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=68.03 E-value=2.4 Score=39.17 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
.-+.++||+|||||..+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999998754
No 327
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.00 E-value=2.4 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+-+|++||+|+|||+.+-..
T Consensus 215 prGvLL~GPPGtGKTllAkAi 235 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAV 235 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999987653
No 328
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=67.98 E-value=5.3 Score=36.79 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|.-+.+.||+|||||..+-.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 355788899999999998754
No 329
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=67.93 E-value=3.4 Score=35.11 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.3
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
.+.+.||+|||||...-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998654
No 330
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=67.85 E-value=5.1 Score=34.51 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=22.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+..+..|+|||.++..........|.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4466789999998776544434567888887
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=67.78 E-value=3.4 Score=34.19 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.4
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-.++.||+|||||.+...
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 668999999999988654
No 332
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=67.75 E-value=3.1 Score=40.51 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+.++++||+|+|||.++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999988764
No 333
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.66 E-value=6.2 Score=33.56 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.-++++|+.|||||......
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 35788999999999875543
No 334
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.64 E-value=2.7 Score=35.20 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
..+.+.|++|||||.++-..
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999988653
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=67.42 E-value=3.6 Score=36.71 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.|..+.+.||.|||||.++-...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999876543
No 336
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=67.05 E-value=6.4 Score=34.82 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=23.8
Q ss_pred cEEE-EcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 211 HVFV-TAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 211 ~vlv-~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
.++| .+.||+|||.+....+....+.|.++.|.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 3445 4459999999987655555566777777644
No 337
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.97 E-value=4.3 Score=39.82 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
...++++.||+|+|||.++....
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 45689999999999999886543
No 338
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=66.91 E-value=6.3 Score=34.48 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
..+++.+..|+|||..+........ .|.+++++-
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 3578899999999988766544334 677777764
No 339
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=66.74 E-value=3.6 Score=35.30 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.7
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
.+++.|+.|||||.++-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999876543
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=66.73 E-value=3.7 Score=36.07 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+++.||.|||||..+-..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987553
No 341
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=66.69 E-value=6.3 Score=34.64 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=22.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+..+..|+|||.++..........|.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4577889999998776544334557788876
No 342
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=66.46 E-value=3.9 Score=33.59 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=14.8
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-.++.||+|||||.+...
T Consensus 25 ~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 468899999999998543
No 343
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=66.41 E-value=4.8 Score=33.73 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=21.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 214 VTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 214 v~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
..+..|+|||.++..........|.+++++
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 356788999999876554444467777776
No 344
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.37 E-value=3.4 Score=40.60 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+-+|++||+|+|||+.+-.
T Consensus 206 prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999998764
No 345
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.10 E-value=2.9 Score=37.35 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
+.+++.||.|+|||..+..
T Consensus 59 n~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp SEEEEESCGGGCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3599999999999988743
No 346
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=65.94 E-value=3 Score=41.52 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+.++++||+|+|||.++...
T Consensus 237 ~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHH
Confidence 3468999999999999987643
No 347
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=65.91 E-value=3.3 Score=35.11 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=16.1
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+.+.||.|||||.++-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999987654
No 348
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=65.16 E-value=5 Score=35.50 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.+..+++.||.|||||.++....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999886543
No 349
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=65.06 E-value=6.4 Score=37.03 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
-++.++..|.|||.++..........|.|++++-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4566889999999988665544445678888774
No 350
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=64.88 E-value=6.8 Score=36.07 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.6
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.++++||.|+|||..+...
T Consensus 106 ~~~l~GppgtGKt~~a~al 124 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAI 124 (267)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999998743
No 351
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.81 E-value=6.9 Score=36.77 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=22.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.++++|++|+|||..+...+......|.++.++
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 678899999999998765443333445555544
No 352
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=64.72 E-value=4.5 Score=34.78 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
|..+.+.||+|+|||...-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 45788999999999987654
No 353
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=64.62 E-value=6.3 Score=34.35 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=22.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+..+..|+|||.++..........|.+++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467788999999876554444568888886
No 354
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=64.55 E-value=6.8 Score=34.47 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 241 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral 241 (333)
.|..+++.|+.|||||..+....-.... +..++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4778999999999999987654433222 44444
No 355
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.36 E-value=3.4 Score=40.82 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+++++.||+|+|||.++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 47899999999999998754
No 356
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=64.33 E-value=3.9 Score=37.10 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
+.+++.||+|+|||..+-.
T Consensus 45 ~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp SEEEEESSTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 3499999999999988764
No 357
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=64.24 E-value=4 Score=36.28 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSA 50 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 358
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.14 E-value=7.9 Score=40.90 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
..+++++||+|+|||.++....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999876544
No 359
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=64.12 E-value=5.8 Score=36.75 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=14.9
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-+++.|+.|||||...-.
T Consensus 6 v~~i~G~~GaGKTTll~~ 23 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRH 23 (318)
T ss_dssp EEEEEESSSSSCHHHHHH
T ss_pred EEEEEecCCCCHHHHHHH
Confidence 468899999999987654
No 360
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=64.08 E-value=3.5 Score=36.35 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=18.2
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|.-+.+.||.|||||.++-.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3466788999999999998765
No 361
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.89 E-value=2.1 Score=38.17 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..++++|+.|||||.++-..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987653
No 362
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=63.87 E-value=6.6 Score=34.86 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=21.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+..+..|.|||.++..........|.+++++
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4467788999998766444333457777775
No 363
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=63.56 E-value=8.2 Score=34.71 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=25.4
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHHHHhcCCCeEEEEcc
Q psy2760 210 NHVFV-TAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 245 (333)
Q Consensus 210 ~~vlv-~apTGSGKTl~~~l~il~~l~~g~ral~l~P 245 (333)
+.++| .+.||+|||.+....+....+.|.++.|+=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 45555 4459999999987665555567788887744
No 364
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=63.53 E-value=4.1 Score=38.52 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
.-.+++|+||+|||.+...
T Consensus 26 gl~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3568899999999998654
No 365
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=63.52 E-value=8.2 Score=35.47 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=23.1
Q ss_pred CcEEEEcC-CCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFVTAH-TSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv~ap-TGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+-++++++ .|.|||.++..........|.|+++|
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 45666655 68999988766444333468888887
No 366
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=63.34 E-value=9 Score=33.59 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=22.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKT 238 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ 238 (333)
.|..+++.|+.|||||.......-.....|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4788999999999999987664433333443
No 367
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=63.30 E-value=4.8 Score=36.01 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.4
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
+++++||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 6999999999999887553
No 368
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=63.29 E-value=3.4 Score=41.47 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+++.||+|+|||..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 478999999999999988764
No 369
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=63.24 E-value=7.3 Score=35.30 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
..+-+.+.+.-|.|||.++..........|.+++++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 345677778999999999876444444557888876
No 370
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.13 E-value=5.3 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
...+++++||+|+|||.++....
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 45699999999999999886543
No 371
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=62.96 E-value=8.3 Score=33.95 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=22.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+.+++..|.|||.++..........|.+++++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44578999999988766444333567788875
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=62.59 E-value=3.8 Score=35.65 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.|+.|||||..+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987654
No 373
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.56 E-value=4 Score=37.51 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.8
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
+++++||+|+|||..+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp CEEEECSTTSSHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 599999999999988754
No 374
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=62.51 E-value=4.5 Score=35.70 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~ 53 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMM 53 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=62.47 E-value=3.9 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+.+.|+.|||||.++-..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346889999999999987653
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=61.98 E-value=15 Score=34.47 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=15.4
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-+.+.||+|||||..+-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999998754
No 377
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=61.73 E-value=4.7 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 378
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=61.61 E-value=4.9 Score=35.34 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||.|||||...-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 379
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=61.51 E-value=10 Score=33.96 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHhcCCCe
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR 239 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~il~~l~~g~r 239 (333)
.|.-+++.|+.|||||..+....-.....+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47889999999999999876654433334444
No 380
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=61.48 E-value=9.9 Score=34.36 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=22.9
Q ss_pred CcEEEEcC-CCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFVTAH-TSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv~ap-TGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+-++++++ .|.|||.++..........|.|+++|
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 44556544 68999988766444334567888876
No 381
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=61.46 E-value=4.8 Score=36.04 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 382
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=61.44 E-value=9.7 Score=32.79 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=22.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcC-CCeEEEE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNH-KTRTIYT 243 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~-g~ral~l 243 (333)
+..+..|.|||.++.......... |.+++++
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 445678999999987655444444 8888876
No 383
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=61.44 E-value=4.3 Score=36.52 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINV 52 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 384
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=61.37 E-value=4.7 Score=36.95 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~ 53 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQN 53 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488899999999999987654
No 385
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=61.34 E-value=9.7 Score=35.82 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
+-+++++.-|.|||.++..........|.+++++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45677899999999998775555556788888774
No 386
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.27 E-value=4.1 Score=40.60 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
..+-+|++||.|+|||+.+-.
T Consensus 242 pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHH
Confidence 357899999999999988754
No 387
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=61.04 E-value=4.9 Score=35.34 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||.|||||...-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYI 49 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488899999999999987543
No 388
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.86 E-value=9.4 Score=38.96 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAIA 231 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~il 231 (333)
.-+++|.|.||||||.+....+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 57999999999999988765554
No 389
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=60.84 E-value=4.7 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHH--------HH-cCCc--EEEEcCCCCcHHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LE-EHNH--VFVTAHTSAGKTVIAE 227 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~-~g~~--vlv~apTGSGKTl~~~ 227 (333)
.+..-|.+++.. ++ .|.+ ++.+|.||||||....
T Consensus 59 ~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred cCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 344456666543 23 4776 5889999999998753
No 390
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=60.69 E-value=8.9 Score=34.38 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=22.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+.+++..|+|||.++..........|.+++++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45578999999998866444333457788775
No 391
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=60.50 E-value=5.2 Score=35.58 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSA 51 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488899999999999987654
No 392
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=60.44 E-value=5.1 Score=36.40 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~ 56 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRL 56 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 488999999999999987654
No 393
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=60.32 E-value=9.3 Score=34.29 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=24.7
Q ss_pred cCCcEEEEc---CCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 208 EHNHVFVTA---HTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 208 ~g~~vlv~a---pTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
.++.+.+.+ ..|.|||.++..........|.+++++
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 456666654 889999998766444333567888875
No 394
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.29 E-value=6.8 Score=40.53 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~i 230 (333)
.+.+++++||+|+|||.++....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999876533
No 395
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=60.16 E-value=5.8 Score=35.94 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999988654
No 396
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=60.14 E-value=3.8 Score=41.70 Aligned_cols=18 Identities=11% Similarity=0.508 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
++++.||+|+|||..+-.
T Consensus 329 ~vLL~GppGtGKT~LAr~ 346 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQF 346 (595)
T ss_dssp CEEEEESSCCTHHHHHHS
T ss_pred ceEEECCCchHHHHHHHH
Confidence 899999999999987754
No 397
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=59.97 E-value=6 Score=35.39 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKI 48 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999998654
No 398
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=59.97 E-value=4.5 Score=36.05 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 478899999999999987654
No 399
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=59.96 E-value=6.7 Score=34.90 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..|..+++.|+.|||||..+....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999876644
No 400
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=59.77 E-value=5.5 Score=33.26 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.3
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|..+.+.||.|||||...-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~ 52 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRG 52 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 5677889999999999987654
No 401
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=59.62 E-value=6.3 Score=34.38 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.8
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+..+.+.|+.|||||.++...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 34678999999999999987553
No 402
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.39 E-value=5.4 Score=39.39 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
.+-+|++||.|+|||+.+-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHH
Confidence 478999999999999987543
No 403
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=59.30 E-value=5.1 Score=37.30 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|.-+.+.||+|||||..+-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 356788999999999998754
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.11 E-value=4.6 Score=33.88 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.2
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+.+.|+.|||||.++-..
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999987653
No 405
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.04 E-value=5.1 Score=47.94 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.4
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+++++++||||+|||..+.-.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHHHHH
Confidence 478899999999999999887443
No 406
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=59.03 E-value=4.5 Score=40.20 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
.+.++++||+|+|||..+-.
T Consensus 49 p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35799999999999998754
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.01 E-value=9.3 Score=45.81 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=20.5
Q ss_pred HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
+...+.+++.||||||||.++-..
T Consensus 920 ~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 920 QKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHCSEEEEECSTTSSHHHHHHHH
T ss_pred HHhcceEEEECCCCCCHHHHHHHH
Confidence 467788999999999999998653
No 408
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=58.84 E-value=5.3 Score=34.46 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
..+.++|+.|||||.++-...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999986543
No 409
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=58.84 E-value=4.4 Score=35.41 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.|+.|||||...-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 367889999999999986543
No 410
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=58.72 E-value=7.1 Score=35.88 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.1
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.++++||.|+|||..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999887543
No 411
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=58.69 E-value=11 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=21.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+..+..|+|||.++..........| +++++
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 4578889999999876544444557 88775
No 412
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=58.37 E-value=5.8 Score=35.86 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 488899999999999987654
No 413
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=58.30 E-value=10 Score=34.23 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=21.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 213 lv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
+..+.||+|||.+....+....+.|.++.|+=
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44667899999998765544445566666653
No 414
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.29 E-value=5.8 Score=35.82 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~ 51 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRC 51 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488899999999999987654
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=58.26 E-value=4.6 Score=36.38 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
+.++++|+.|||||.++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999987653
No 416
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=58.26 E-value=7.4 Score=37.26 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 206 LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~--vlv~apTGSGKTl~~ 226 (333)
++.|.| ++..|.||||||..-
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEEe
Confidence 467775 577999999999775
No 417
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=58.15 E-value=4.3 Score=37.88 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHH
Confidence 388999999999999987644
No 418
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=58.05 E-value=6 Score=35.60 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~ 45 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 488899999999999987654
No 419
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=58.05 E-value=5.4 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.3
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+.+.|+.|||||.++-..
T Consensus 24 iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999998653
No 420
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=57.85 E-value=11 Score=35.71 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~ 244 (333)
.-++.++..|.|||.++........ ..|.|++++-
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3467788999999988766444444 6788888864
No 421
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=57.85 E-value=6 Score=35.96 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 422
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.80 E-value=6 Score=35.72 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 423
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.64 E-value=7.1 Score=34.95 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.8
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~i 230 (333)
+++++||.|+|||..+....
T Consensus 44 ~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 59999999999998876543
No 424
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=57.56 E-value=10 Score=35.59 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=17.9
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|..+.+.||+|||||...-.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~ 74 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDA 74 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3567889999999999987654
No 425
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=57.52 E-value=8 Score=36.45 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHHH
Q psy2760 195 LDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIAE 227 (333)
Q Consensus 195 l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~~ 227 (333)
+..-|.+++.. ++.|.| ++..|.||||||..-.
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 34446655543 467776 5779999999998753
No 426
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=57.48 E-value=6 Score=35.57 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~ 50 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDL 50 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488899999999999987654
No 427
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=57.40 E-value=9.9 Score=35.49 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.+..+.+.|++|+|||..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~ 75 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEA 75 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 456788899999999987654
No 428
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=57.36 E-value=6.8 Score=33.75 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=15.0
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-.++.||+|||||.+...
T Consensus 25 ~~~I~G~NgsGKStil~a 42 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDA 42 (203)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 568899999999988653
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=57.28 E-value=6.8 Score=34.16 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.8
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
.+++.||+||||+..+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999877653
No 430
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=57.18 E-value=7.5 Score=32.89 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~i 230 (333)
+.+.+.+++|||||......+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356789999999998876543
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=56.95 E-value=5.9 Score=33.78 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
+..+.+.++.|||||.++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~ 22 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKR 22 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999999754
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=56.82 E-value=6.3 Score=36.05 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 488999999999999987654
No 433
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=56.70 E-value=5.6 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
.++.++++||+|+|||.++...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHH
Confidence 4678999999999999887543
No 434
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=56.60 E-value=17 Score=35.70 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.6
Q ss_pred CHHHHHHHHHH---HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 196 DVFQKQAIIKL---EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 196 ~~~Q~~ai~~l---~~g~~vlv~apTGSGKTl~~~l 228 (333)
-.--..+|..+ -.|..+.+.||+|+|||.....
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 34445566664 6799999999999999998854
No 435
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=56.53 E-value=7.9 Score=40.02 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.6
Q ss_pred cEEEEcCCCCcHHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~ 229 (333)
+++++||||+|||.++...
T Consensus 490 ~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6999999999999988643
No 436
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=56.25 E-value=6.6 Score=35.64 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||.|||||...-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHHH
Confidence 488999999999999987654
No 437
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=55.95 E-value=5.8 Score=38.50 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||...
T Consensus 74 ~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 74 GERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 445567777764 467776 566999999999875
No 438
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=55.55 E-value=14 Score=34.99 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHh--cCCCeEEEEc
Q psy2760 210 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTS 244 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~il~~l--~~g~ral~l~ 244 (333)
+-+++++..|.|||.++........ ..|.+++++-
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5677889999999998876554444 6788888764
No 439
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=55.46 E-value=14 Score=33.11 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=24.5
Q ss_pred CHHHHHHHHH-HHcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 196 DVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 196 ~~~Q~~ai~~-l~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
+..+.+.+.. +..++.++++||.|+|||......
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHH
Confidence 4445555544 345789999999999999876554
No 440
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=55.27 E-value=9 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++..|.||||||..-
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 445556666543 467776 567999999999875
No 441
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=55.19 E-value=9.2 Score=36.30 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++..|.||||||..-
T Consensus 59 ~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 59 AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred ecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 344556666544 367776 477999999999874
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=54.99 E-value=5.5 Score=37.14 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=15.0
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
-.+++||+|||||.+...
T Consensus 25 ~~~i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDA 42 (339)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 457899999999998753
No 443
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=54.90 E-value=8.5 Score=36.61 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||...
T Consensus 70 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 70 PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344456666644 367775 477999999999875
No 444
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.64 E-value=9.5 Score=36.01 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=18.3
Q ss_pred HHHHHcCCc--EEEEcCCCCcHHHHH
Q psy2760 203 IIKLEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 203 i~~l~~g~~--vlv~apTGSGKTl~~ 226 (333)
+..++.|.| ++.+|.||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 73 VTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 344577876 567999999999765
No 445
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=54.53 E-value=35 Score=28.58 Aligned_cols=55 Identities=7% Similarity=-0.122 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcCCcEEEeCCCCCC
Q psy2760 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVF 274 (333)
Q Consensus 219 GSGKTl~~~l~il~~l~~g~ral~l~PtraLa~Q~~~~l~~~f~~vglltGd~~~~ 274 (333)
.+.|... +.-++.....+.++|++++++.-+..+.+.|+...-.+..++|+.+..
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~ 83 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 83 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC------
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHH
Confidence 4566443 334444444678899999999999999999977533588899887644
No 446
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=54.41 E-value=9.6 Score=36.34 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++..|.||||||...
T Consensus 65 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344456665543 467775 567999999999875
No 447
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.37 E-value=10 Score=36.76 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHcCCcE--EEEcCCCCcHHHHHH
Q psy2760 206 LEEHNHV--FVTAHTSAGKTVIAE 227 (333)
Q Consensus 206 l~~g~~v--lv~apTGSGKTl~~~ 227 (333)
++.|.|+ +.+|.||||||....
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HhCCcceEEEEECCCCCCCceEeC
Confidence 4778764 679999999998763
No 448
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=54.24 E-value=9.4 Score=36.74 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||...
T Consensus 77 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp CTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344456666543 467775 467999999999874
No 449
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.19 E-value=9.5 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=16.8
Q ss_pred HHcCCcE--EEEcCCCCcHHHHH
Q psy2760 206 LEEHNHV--FVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~v--lv~apTGSGKTl~~ 226 (333)
++.|.|+ +..|.||||||...
T Consensus 99 ~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 99 ALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCceEEEEECCCCCCCceEe
Confidence 4677764 66999999999875
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=54.08 E-value=6.5 Score=35.69 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
..+.++|+.|||||.++-..
T Consensus 76 ~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46899999999999988654
No 451
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=54.06 E-value=8.2 Score=37.08 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.1
Q ss_pred HcCCcEEEEcCCCCcHHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..|+.+++.||.|+|||..+-..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46788999999999999876543
No 452
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.79 E-value=9.7 Score=36.33 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHcCCcE--EEEcCCCCcHHHHH
Q psy2760 206 LEEHNHV--FVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~v--lv~apTGSGKTl~~ 226 (333)
++.|.|+ +..|.||||||...
T Consensus 88 ~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 88 AFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHTTCCEEEEEEECTTSSHHHHH
T ss_pred HhCCceeEEEeeCCCCCCCceEE
Confidence 4678764 77999999999875
No 453
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=53.75 E-value=9.3 Score=36.50 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||..-
T Consensus 56 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 56 DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 334456666553 467775 567999999999875
No 454
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=53.72 E-value=9.8 Score=36.23 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++..|.||||||...
T Consensus 53 ~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 334456665543 467775 566999999999876
No 455
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=53.68 E-value=9.2 Score=36.49 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++..|.||||||..-
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 344456666543 467775 577999999999875
No 456
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=53.63 E-value=10 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.7
Q ss_pred HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 206 LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~--vlv~apTGSGKTl~~ 226 (333)
++.|.| ++.+|.||||||...
T Consensus 85 ~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhcCCeeEEEEeCCCCCCCceEe
Confidence 467775 567999999999765
No 457
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=53.56 E-value=7.7 Score=34.27 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l~ 229 (333)
..+-+++.||+||||+..+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3456788999999998877553
No 458
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=53.44 E-value=9.7 Score=36.39 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIAE 227 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~~ 227 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||....
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred eccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 344456665543 467876 4679999999997653
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=53.35 E-value=7.7 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||+|||||...-+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~ 83 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMM 83 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 488999999999999987654
No 460
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=53.20 E-value=7.1 Score=37.17 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=21.8
Q ss_pred CCHHHHHHHHH-------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 195 LDVFQKQAIIK-------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 195 l~~~Q~~ai~~-------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
+..-|.+++.. ++.|.| ++.+|.||||||...
T Consensus 62 ~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp TTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 33445555543 367776 567999999999875
No 461
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=53.13 E-value=10 Score=34.10 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 214 VTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 214 v~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
..+..|+|||.++..........|.+++++
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 356789999998766444333446666654
No 462
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=53.07 E-value=6.1 Score=33.09 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCcHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIA 226 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~ 226 (333)
+..+++.|++|+|||...
T Consensus 26 ~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 668999999999999765
No 463
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=52.99 E-value=13 Score=34.91 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..+.+.|++|+|||...-..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3468899999999998875443
No 464
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.76 E-value=16 Score=32.81 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCCcHHHHHHHHH
Q psy2760 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230 (333)
Q Consensus 196 ~~~Q~~ai~~l~~g~~vlv~apTGSGKTl~~~l~i 230 (333)
+..+.+.+.. .....++|.||.|+|||.......
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 4445555544 444689999999999998775443
No 465
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.74 E-value=10 Score=36.96 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.4
Q ss_pred HHHHHcCCc--EEEEcCCCCcHHHHH
Q psy2760 203 IIKLEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 203 i~~l~~g~~--vlv~apTGSGKTl~~ 226 (333)
+..++.|.| ++.+|.||||||...
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEe
Confidence 344577876 467999999999875
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=52.55 E-value=7 Score=35.83 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcHHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l~ 229 (333)
.-+.++||.|||||.++-..
T Consensus 6 ~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp CEEEEESCC---CCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999987653
No 467
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=51.99 E-value=11 Score=33.16 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=22.3
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFV-TAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv-~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+-+.+ .+..|+|||.++........ .|.+++++
T Consensus 28 ~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 28 KIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp EEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 33434 66778999998866444333 68888886
No 468
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=51.94 E-value=9.6 Score=34.10 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
...+.+.||+|||||.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999988653
No 469
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=51.84 E-value=9.5 Score=36.67 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.7
Q ss_pred HHHHcCCc--EEEEcCCCCcHHHHH
Q psy2760 204 IKLEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 204 ~~l~~g~~--vlv~apTGSGKTl~~ 226 (333)
..++.|.| ++.+|.||||||...
T Consensus 73 ~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 73 QSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhhhcCCceEEEEECCCCCCCeEee
Confidence 33567876 466999999999875
No 470
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=51.84 E-value=10 Score=38.20 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.1
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|+.+.+.||+|||||...-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4689999999999999987655
No 471
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=51.61 E-value=12 Score=36.54 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIAE 227 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~~ 227 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||....
T Consensus 130 ~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 130 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred ecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 445567766654 467775 5679999999998753
No 472
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.27 E-value=10 Score=36.38 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~ 226 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||...
T Consensus 76 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 76 GPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 334456666543 367775 567999999999775
No 473
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=51.11 E-value=8.5 Score=34.89 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
|..+.+.||+|||||...-+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~ 49 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRA 49 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 77899999999999988654
No 474
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.08 E-value=7.2 Score=38.96 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
+.++++||+|+|||..+-.
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4599999999999988754
No 475
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=51.06 E-value=9 Score=33.78 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=22.8
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFV-TAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv-~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+-+.+ .+..|.|||.++..........|.|++++
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 34444 46778999998776444333457888886
No 476
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=50.78 E-value=17 Score=33.16 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=23.2
Q ss_pred CcEEEE-cCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 210 NHVFVT-AHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 210 ~~vlv~-apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+-+++. +..|.|||.++..........|.++++|
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 445554 4568999999876544444568888887
No 477
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=50.72 E-value=7.3 Score=37.56 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=22.5
Q ss_pred CCHHHHHHHHH-------HHcCCc--EEEEcCCCCcHHHHHH
Q psy2760 195 LDVFQKQAIIK-------LEEHNH--VFVTAHTSAGKTVIAE 227 (333)
Q Consensus 195 l~~~Q~~ai~~-------l~~g~~--vlv~apTGSGKTl~~~ 227 (333)
+..-|.+++.. ++.|.| ++..|.||||||....
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 34446555543 367765 5679999999998753
No 478
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=50.17 E-value=12 Score=36.28 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHH--------HHcCCc--EEEEcCCCCcHHHHHH
Q psy2760 194 ELDVFQKQAIIK--------LEEHNH--VFVTAHTSAGKTVIAE 227 (333)
Q Consensus 194 ~l~~~Q~~ai~~--------l~~g~~--vlv~apTGSGKTl~~~ 227 (333)
.+..-|.+++.. ++.|.| ++.+|.||||||....
T Consensus 110 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 110 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred ecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 445567666653 467775 5679999999998753
No 479
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=49.49 E-value=10 Score=35.98 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.0
Q ss_pred HHcCCcE--EEEcCCCCcHHHHH
Q psy2760 206 LEEHNHV--FVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~v--lv~apTGSGKTl~~ 226 (333)
++.|.|+ +.+|.||||||...
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHCCcceeEEEeCCCCCCCceEe
Confidence 4678764 66999999999876
No 480
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.26 E-value=7.1 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.4
Q ss_pred HHcCCcEEEEcCCCCcHHHHH
Q psy2760 206 LEEHNHVFVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~vlv~apTGSGKTl~~ 226 (333)
+..+++++++||||+|||...
T Consensus 1301 l~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHHH
T ss_pred HHCCCcEEEECCCCCCHHHHH
Confidence 478899999999999999654
No 481
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=48.88 E-value=20 Score=30.68 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEE
Q psy2760 212 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243 (333)
Q Consensus 212 vlv~apTGSGKTl~~~l~il~~l~~g~ral~l 243 (333)
+++-|+-|||||.......-.....|..+++.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67789999999998776544444456666654
No 482
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=48.49 E-value=8.9 Score=29.99 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.0
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
.+++.|++|+|||.....
T Consensus 5 ~i~v~G~~~~GKssl~~~ 22 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQ 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999977543
No 483
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=48.42 E-value=8.7 Score=38.69 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCcHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~ 227 (333)
.|..+.+.||+|||||...-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHH
Confidence 48899999999999998754
No 484
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=48.38 E-value=11 Score=37.08 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred HcCCcEEEEcCCCCcHHHHHHH
Q psy2760 207 EEHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 207 ~~g~~vlv~apTGSGKTl~~~l 228 (333)
..|..+.+.||+|||||...-+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~ 157 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRT 157 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 5789999999999999988755
No 485
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=48.29 E-value=9.1 Score=30.09 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.9
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
.+++.|++|+|||.....
T Consensus 3 ki~v~G~~~~GKSsli~~ 20 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNR 20 (161)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999976543
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=48.26 E-value=8 Score=33.77 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
++.+++.|+.|||||..+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999987553
No 487
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=47.75 E-value=14 Score=36.44 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.9
Q ss_pred HHcCCc--EEEEcCCCCcHHHHH
Q psy2760 206 LEEHNH--VFVTAHTSAGKTVIA 226 (333)
Q Consensus 206 l~~g~~--vlv~apTGSGKTl~~ 226 (333)
++.|.| ++.+|.||||||...
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 467775 577999999999875
No 488
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=47.19 E-value=8.6 Score=34.88 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=14.9
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
++.+.||+|+|||...-.
T Consensus 4 ~v~lvG~nGaGKSTLln~ 21 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNT 21 (270)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987543
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=47.15 E-value=8.6 Score=34.08 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.+..+++.|+.|||||..+-.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456889999999999988743
No 490
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=46.93 E-value=34 Score=33.64 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHH-----cCCcEEEEcCCCCcHHHHHHHH
Q psy2760 193 FELDVFQKQAIIKLE-----EHNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 193 f~l~~~Q~~ai~~l~-----~g~~vlv~apTGSGKTl~~~l~ 229 (333)
|.-+.-..+.+...+ ..+-++|+|+.|.|||..+...
T Consensus 126 ~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~ 167 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA 167 (591)
T ss_dssp CCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHH
Confidence 334555555555543 2456889999999999987654
No 491
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=46.81 E-value=22 Score=29.94 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEYA 229 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l~ 229 (333)
-..+++.|++|+|||......
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l 50 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERT 50 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHH
Confidence 357889999999999876443
No 492
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=46.80 E-value=11 Score=36.19 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHhcCCCeEEEEc
Q psy2760 211 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 244 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l~il~~l~~g~ral~l~ 244 (333)
-+++++..|.|||.++..........|.+++++-
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 4677889999999988765554445677887764
No 493
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=46.73 E-value=10 Score=30.00 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.1
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
.+++.|++|+|||.....
T Consensus 7 ~i~v~G~~~~GKssl~~~ 24 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQR 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 689999999999976543
No 494
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=46.62 E-value=12 Score=33.21 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
..+.+.||+|||||...-.
T Consensus 25 e~~~liG~nGsGKSTLl~~ 43 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLEL 43 (240)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5678999999999987654
No 495
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=46.38 E-value=9.9 Score=31.20 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAE 227 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~ 227 (333)
...+++.|++|+|||....
T Consensus 48 ~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3479999999999996643
No 496
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=46.20 E-value=11 Score=38.01 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|+.+.+.||+|||||...-+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 488999999999999987654
No 497
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=45.99 E-value=10 Score=30.39 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q psy2760 210 NHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 210 ~~vlv~apTGSGKTl~~~l 228 (333)
-.+++.|++|+|||.....
T Consensus 9 ~~i~v~G~~~~GKSsli~~ 27 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHR 27 (182)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3789999999999976543
No 498
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=45.97 E-value=13 Score=35.55 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHH
Q psy2760 208 EHNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 208 ~g~~vlv~apTGSGKTl~~~l 228 (333)
.|..+.+.||.|||||...-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRC 49 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHH
Confidence 488899999999999987543
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=45.93 E-value=10 Score=36.49 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCcHHHHHHH
Q psy2760 209 HNHVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 209 g~~vlv~apTGSGKTl~~~l 228 (333)
..-++++|+.|||||.++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45688999999999998764
No 500
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=45.89 E-value=10 Score=29.97 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.1
Q ss_pred cEEEEcCCCCcHHHHHHH
Q psy2760 211 HVFVTAHTSAGKTVIAEY 228 (333)
Q Consensus 211 ~vlv~apTGSGKTl~~~l 228 (333)
++++.|++|+|||.....
T Consensus 8 ~i~v~G~~~~GKSsli~~ 25 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWR 25 (170)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 689999999999976543
Done!