Your job contains 1 sequence.
>psy2760
MELHKVTESSIKIYVDHRALIIPRGGLFWDTLYEYDVITILDPGPRIDDLPPVFPDVEKL
LEDLNIGGLDELSIHDFNKHLKFWKPKVQLVAGIINLIQLGGENASKFEQGLWESHEVIS
GDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDF
DAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRT
IYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKH
LKFWKPKVQLDDLFDWTMASDATTLEIFTYNKT
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2760
(333 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 412 3.1e-37 1
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 381 1.8e-36 2
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 386 4.6e-36 2
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 378 6.1e-36 2
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 375 2.1e-35 2
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 379 2.3e-35 2
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 372 5.5e-35 2
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 369 7.1e-35 2
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 369 2.4e-34 2
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 369 3.0e-34 2
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 369 4.4e-34 2
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 369 7.1e-34 2
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 379 1.2e-33 1
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 367 2.2e-32 1
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 360 1.2e-31 1
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 343 8.7e-31 2
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 302 8.5e-27 2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 313 1.3e-26 1
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 281 4.4e-24 2
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 275 1.6e-22 1
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 245 5.9e-21 2
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 258 7.9e-21 1
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 257 8.7e-21 1
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 257 8.8e-21 1
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 248 3.1e-20 1
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 251 3.6e-20 1
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 250 5.1e-20 1
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 248 7.0e-20 1
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 248 7.0e-20 1
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 248 8.2e-20 1
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 248 8.2e-20 1
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 248 8.2e-20 1
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 247 1.1e-19 1
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 247 1.2e-19 1
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 246 1.3e-19 1
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 245 1.9e-19 1
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 239 1.0e-18 2
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel... 241 2.9e-18 1
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 226 5.1e-16 1
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 223 1.2e-15 1
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 178 2.6e-10 1
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 158 3.3e-08 1
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein... 152 1.8e-07 1
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 135 2.8e-06 1
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 135 3.2e-05 1
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 135 3.2e-05 1
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 130 0.00011 1
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 130 0.00012 1
UNIPROTKB|Q8MJK1 - symbol:CBY1 "Protein chibby homolog 1"... 95 0.00039 1
UNIPROTKB|B2CAW6 - symbol:CBY1 "PKD2 interactor" species:... 94 0.00050 1
MGI|MGI:1920989 - symbol:Cby1 "chibby homolog 1 (Drosophi... 93 0.00064 1
RGD|708481 - symbol:Cby1 "chibby homolog 1 (Drosophila)" ... 93 0.00064 1
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 412 (150.1 bits), Expect = 3.1e-37, P = 3.1e-37
Identities = 87/160 (54%), Positives = 115/160 (71%)
Query: 112 LWESHEVIS-GDAKEEQEKATVFPSNE---EENNVIPQEVDIPILKISNTLPKHVTQTEW 167
L S E S G K ++ PS E +++++ ++ P+L IS T +++W
Sbjct: 179 LTRSEETSSTGTPKSPKQSNVQLPSEEFRDVDDHIMKADLK-PVLNISTTTKNF--KSDW 235
Query: 168 AEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAE 227
AEM+D+S+P+ +F ++P A +PFELDVFQKQAI+KLE+ +VFV AHTSAGKTV+AE
Sbjct: 236 AEMVDISQPINNFKEQIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAE 295
Query: 228 YAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
YAIALS+ TRTIYTSPIKALSNQKYRDFR+TF+DVGLI
Sbjct: 296 YAIALSKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLI 335
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 381 (139.2 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 77/123 (62%), Positives = 90/123 (73%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
PK V Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PKPVPQEQWAIPVDVTSPVGDFYRLIPQPAFQWSFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 279 KLL 281
L+
Sbjct: 395 CLI 397
Score = 53 (23.7 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 50 LPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPKV 88
LPP PD+++ E L + L +H ++ W+ K+
Sbjct: 47 LPPCAPDLQQEAEQLFLSSPAWLPLHGVEHSVRKWQRKM 85
Score = 47 (21.6 bits), Expect = 7.7e-36, Sum P(2) = 7.7e-36
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YEYDVITI-------LDPGPRIDDLP-PVFPDVEKLLEDLNIGGLDE 71
+E D++T+ +D P+ P P + LLE L++GG DE
Sbjct: 179 FEQDLLTVPPGFKKGVDFAPKDHSTPAPGLLSLSHLLEPLDLGGGDE 225
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 386 (140.9 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
Identities = 92/206 (44%), Positives = 122/206 (59%)
Query: 77 FNKHLKFWKPKVQLVAGIINLIQLGGE-NASKFEQGLWESHEVISGDAKEEQEKATVFPS 135
F K + F PK V G+++L +L + S ++G E+ GDA +T
Sbjct: 190 FKKGVDF-APKAP-VPGLLSLSRLLEPLDLSGGDEGEGEAAGGPRGDAASASPSSTPLIR 247
Query: 136 NEEENNVIPQEVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFEL 195
+++ +E + + P Q +WA +DV+ PV DF +P A W FE
Sbjct: 248 ASSLEDLVLKEASTVVSTLEPLKPP--PQEQWAVPVDVTSPVGDFYRLIPQPAFQWAFEP 305
Query: 196 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 255
DVFQKQAI+ LE+H+ VFV AHTSAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+R
Sbjct: 306 DVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFR 365
Query: 256 DFRETFQDVGLIDDLPPVFPDVEKLL 281
DFR TF DVGL+ + P+ L+
Sbjct: 366 DFRNTFGDVGLLTGDVQLHPEASCLI 391
Score = 44 (20.5 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 50 LPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPK 87
LPP PD+ + E L + L +H + W+ K
Sbjct: 47 LPPCAPDLCQEAEQLFLSSPAWLPLHGVEHSARKWQRK 84
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 378 (138.1 bits), Expect = 6.1e-36, Sum P(2) = 6.1e-36
Identities = 77/123 (62%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
PK Q EWA +DV+ PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PKPPPQEEWAIPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 279 KLL 281
L+
Sbjct: 395 CLI 397
Score = 51 (23.0 bits), Expect = 6.1e-36, Sum P(2) = 6.1e-36
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 50 LPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPKV 88
LPP PD+++ E L + L +H + W+ K+
Sbjct: 47 LPPCAPDLQQEAEQLFLSSPAWLPLHGVEHSARKWQRKM 85
Score = 49 (22.3 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 33 YEYDVITI-------LDPGPRIDDLP-PVFPDVEKLLEDLNIGGLDE 71
+E D++T+ +D P+ P P + +LLE L++GG DE
Sbjct: 179 FEKDLLTVPPGFKKGVDFAPKDHSAPAPGLLSLSRLLEPLDLGGGDE 225
Score = 40 (19.1 bits), Expect = 8.7e-35, Sum P(2) = 8.7e-35
Identities = 20/100 (20%), Positives = 39/100 (39%)
Query: 67 GGLDELSIHDFN------KHLKFWKPKVQLVAGIINLIQLGGENASKFEQGLWESHEVIS 120
GG+DE SI D + + + F K + + G + ++ S GL ++
Sbjct: 157 GGMDEPSITDLSTREEAEEEIDFEKDLLTVPPGFKKGVDFAPKDHSAPAPGLLSLSRLLE 216
Query: 121 ----GDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISN 156
G E++ +A P + + V P+ + S+
Sbjct: 217 PLDLGGGDEDESEAVGQPGGAQRDVVSAPPCSAPLARASS 256
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 375 (137.1 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 76/123 (61%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
PK Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PKPPPQEQWAIPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 279 KLL 281
L+
Sbjct: 395 CLI 397
Score = 49 (22.3 bits), Expect = 2.1e-35, Sum P(2) = 2.1e-35
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 50 LPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPKV 88
LPP PD+++ E L + L +H + W+ K+
Sbjct: 47 LPPCAPDLQQEAERLFLSSPAWLPLHGVEHSAREWQRKM 85
Score = 48 (22.0 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 21/100 (21%), Positives = 39/100 (39%)
Query: 67 GGLDELSIHDFN------KHLKFWKPKVQLVAGIINLIQLGGENASKFEQGLWESHEVIS 120
GG+DE SI D + + + F K + L G + + S GL ++
Sbjct: 157 GGMDEPSITDLSTREEAEEEIDFEKDLLTLPPGFKKGVDFAPKGHSAPAAGLLSLSRLLE 216
Query: 121 ----GDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISN 156
G E++ +A P ++ V +P+ + S+
Sbjct: 217 PLDLGGGDEDESEAVGQPGGPRQDTVSASPGSVPLARASS 256
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 379 (138.5 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 87/192 (45%), Positives = 116/192 (60%)
Query: 91 VAGIINLIQLGGE-NASKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIPQEVDI 149
V G+++L +L + S ++G E+ GDA +T +++ +E
Sbjct: 167 VPGLLSLSRLLEPLDLSGGDEGEGEAAGGPRGDAASASPSSTPLIRASSLEDLVLKEAST 226
Query: 150 PILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH 209
+ + P Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE+H
Sbjct: 227 VVSTLEPLKPP--PQEQWAVPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLEQH 284
Query: 210 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDD 269
+ VFV AHTSAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+
Sbjct: 285 DSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTG 344
Query: 270 LPPVFPDVEKLL 281
+ P+ L+
Sbjct: 345 DVQLHPEASCLI 356
Score = 44 (20.5 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 50 LPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPK 87
LPP PD+ + E L + L +H + W+ K
Sbjct: 9 LPPCAPDLCQEAEQLFLSSPAWLPLHGVEHSARKWQRK 46
Score = 42 (19.8 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 33 YEYDVITILDPGPR--ID----DLPPVFP---DVEKLLEDLNIGGLDE 71
+E D++T+ PG + +D D P P + +LLE L++ G DE
Sbjct: 141 FEKDLLTV-PPGFKKGVDFAPKDHPAPVPGLLSLSRLLEPLDLSGGDE 187
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 372 (136.0 bits), Expect = 5.5e-35, Sum P(2) = 5.5e-35
Identities = 71/102 (69%), Positives = 84/102 (82%)
Query: 166 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVI 225
+WA +D+S P DF ++P A +PFELDVFQKQAI++LE H+ VFV AHTSAGKTV+
Sbjct: 290 KWAIPVDISSPCADFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVV 349
Query: 226 AEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AEYAIALSQ H TRTIYTSPIKALSNQK+RDF+ TF DVGL+
Sbjct: 350 AEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLL 391
Score = 48 (22.0 bits), Expect = 5.5e-35, Sum P(2) = 5.5e-35
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 49 DLPPVFPDVEKL-LEDLNIGGLDELSIHDFNKH 80
DLPPV PD L L ++ G EL H K+
Sbjct: 5 DLPPVGPDDLPLSLLEMGCSGRFELITHTLPKN 37
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 369 (135.0 bits), Expect = 7.1e-35, Sum P(2) = 7.1e-35
Identities = 74/123 (60%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 279 KLL 281
L+
Sbjct: 395 CLI 397
Score = 50 (22.7 bits), Expect = 7.1e-35, Sum P(2) = 7.1e-35
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 50 LPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWKPK 87
LPP PD+++ E L + L +H + W+ K
Sbjct: 47 LPPCAPDLQQEAEQLFLSSPAWLPLHGVEHSARKWQRK 84
Score = 42 (19.8 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 33 YEYDVITILDPGPR--ID----DLPPVFPDVEKL---LEDLNIGGLDE 71
+E D++TI PG + +D D P P + L LE L++GG DE
Sbjct: 179 FEKDLLTI-PPGFKKGMDFAPKDCPTPAPGLLSLSCMLEPLDLGGGDE 225
Score = 37 (18.1 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 67 GGLDELSIHDFN 78
GG+DE +I D N
Sbjct: 157 GGMDEPTITDLN 168
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 369 (135.0 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 74/123 (60%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 117 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 176
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 177 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 236
Query: 279 KLL 281
L+
Sbjct: 237 CLI 239
Score = 43 (20.2 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 33 YEYDVITILDPGPR--ID----DLPPVFP---DVEKLLEDLNIGGLDE 71
+E D++TI PG + +D D P P + LLE L++GG DE
Sbjct: 21 FEKDLLTI-PPGFKKGMDFAPKDCPTPAPGLLSLSCLLEPLDLGGGDE 67
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 369 (135.0 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 74/123 (60%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 117 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 176
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 177 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 236
Query: 279 KLL 281
L+
Sbjct: 237 CLI 239
Score = 42 (19.8 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 33 YEYDVITILDPGPR--ID----DLPPVFPDVEKL---LEDLNIGGLDE 71
+E D++TI PG + +D D P P + L LE L++GG DE
Sbjct: 21 FEKDLLTI-PPGFKKGMDFAPKDCPTPAPGLLSLSCMLEPLDLGGGDE 67
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 369 (135.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 74/123 (60%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 82 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 141
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 142 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 201
Query: 279 KLL 281
L+
Sbjct: 202 CLI 204
Score = 40 (19.1 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 41 LDPGPRIDDLP-PVFPDVEKLLEDLNIGGLDE 71
+D P+ P P + LLE L++GG DE
Sbjct: 1 MDFAPKDCPTPAPGLLSLSCLLEPLDLGGGDE 32
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 369 (135.0 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 74/123 (60%), Positives = 89/123 (72%)
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 82 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 141
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVE 278
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+ + P+
Sbjct: 142 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 201
Query: 279 KLL 281
L+
Sbjct: 202 CLI 204
Score = 38 (18.4 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 41 LDPGPRIDDLP-PVFPDVEKLLEDLNIGGLDE 71
+D P+ P P + +LE L++GG DE
Sbjct: 1 MDFAPKDCPTPAPGLLSLSCMLEPLDLGGGDE 32
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 379 (138.5 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 90/229 (39%), Positives = 134/229 (58%)
Query: 57 VEKLLEDLNIGGLDELSIHDFNKHLKFWKPKVQLVAGIINLI-QLGGENASKFEQGLWES 115
+++++ + GGL E++ F++ LKF + K + A + Q E S E+
Sbjct: 184 LDRIINFASEGGLLEVA-PGFSRGLKFEEAKSKEAADDDEEVEQTLQEEESNINPEQDET 242
Query: 116 HEVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLPKHVTQT---EWAEMLD 172
+ G E++E A+ ++ + ++P V+ P L+ L + EWA ++D
Sbjct: 243 ASDVGGVKIEDEESASEDEEEDDIDTLLP--VEFPSLEPRAPLLSAFQKKGGKEWAHVVD 300
Query: 173 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL 232
V+K + +F VP MA WPFELD FQK+A+ LE + VFV AHTSAGKTV+AEYAIAL
Sbjct: 301 VNKEISNFHELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIAL 360
Query: 233 SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
+ H T+ IYTSPIKALSNQK+RDF+ TF DVG++ + P+ L+
Sbjct: 361 AAKHMTKAIYTSPIKALSNQKFRDFKNTFDDVGILTGDVQINPEASCLI 409
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 367 (134.2 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 80/173 (46%), Positives = 116/173 (67%)
Query: 114 ESHEVISGDAKEEQ-EKATVFPSNEEE-NNVIPQEVDIPILK-ISNTLPKHVTQTEWAEM 170
+S + IS + EE E+ T +++ E + ++P +D K +S ++P + EWA +
Sbjct: 249 KSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGRTKPVSKSVP---VKKEWAHV 305
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
+D++ + +FD +P A +WPFELD FQK+A+ LE+ + VFV AHTSAGKTV+AEYAI
Sbjct: 306 VDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI 365
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV--GLIDDLPPVFPDVEKLL 281
A++ + T+TIYTSPIKALSNQK+RDF+ETF DV GLI + PD L+
Sbjct: 366 AMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLI 418
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 360 (131.8 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 81/185 (43%), Positives = 110/185 (59%)
Query: 100 LGGENASKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIPQEV-DIPILKISNTL 158
L G + S + ++ GD + K TV N+E ++P + + N L
Sbjct: 200 LEGVHISAASEAALNKSTILDGDVSKP--KPTVPFDNKEIEGLVPFDYSNFKYTDKKNAL 257
Query: 159 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 218
K WA ++D+ + DF VP MA TWPFELD FQK+A+ LE+ + VFV AHT
Sbjct: 258 DKRT----WAHVVDLDHKIEDFQELVPNMARTWPFELDTFQKEAVFHLEQGDSVFVAAHT 313
Query: 219 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLIDDLPPVFPD 276
SAGKTV+AEYAIA++ + T+ IYTSPIKALSNQK+RDF+ETF+D VGLI + P+
Sbjct: 314 SAGKTVVAEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPE 373
Query: 277 VEKLL 281
L+
Sbjct: 374 ANCLI 378
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 343 (125.8 bits), Expect = 8.7e-31, Sum P(2) = 8.7e-31
Identities = 83/181 (45%), Positives = 113/181 (62%)
Query: 107 KFEQGLWESHEVISGDAK-----EEQEKA-TVFPSNEEENNVIPQEVDIPILKISNTLPK 160
+F+ W++ +V S + E E V + E ++++P + I L S TL
Sbjct: 189 EFDPEKWDTKKVKSSNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPS-TLNL 247
Query: 161 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSA 220
H Q ++A ++D S P+ +F VP MA +PFELD FQK+AI LE + VFV AHTSA
Sbjct: 248 H-KQPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSA 306
Query: 221 GKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKL 280
GKTV+AEYAIAL+Q H T+ IYTSPIKALSNQK+RDF+ F+DVG++ V P+ L
Sbjct: 307 GKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCL 366
Query: 281 L 281
L
Sbjct: 367 L 367
Score = 37 (18.1 bits), Expect = 8.7e-31, Sum P(2) = 8.7e-31
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 35 YDVITILDPGPRI 47
YDV T L P P +
Sbjct: 41 YDVDTFLKPSPAL 53
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 302 (111.4 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 61/106 (57%), Positives = 78/106 (73%)
Query: 164 QTEWA--EMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAG 221
+ +WA E +++ P+ D I +PF+LD FQKQAI+ +E+ VF+TAHTSAG
Sbjct: 404 EKQWAFLEQKEITSPLSDLITNPAI---EYPFDLDSFQKQAIVHMEQGESVFITAHTSAG 460
Query: 222 KTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
KTVIAEYAIA++ + TR IYTSPIKALSNQK+RDF+ TF DVGLI
Sbjct: 461 KTVIAEYAIAMAAKNMTRAIYTSPIKALSNQKFRDFKNTFNDVGLI 506
Score = 42 (19.8 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 124 KEEQEKATVFPSNEEENNVIPQEVDI 149
+EE E+A V+ +++E+++ +E ++
Sbjct: 316 REEAEEAEVYEDDDQEDDLDIEEEEL 341
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 313 (115.2 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 114 ESHEVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLPKHVTQT-EWAEMLD 172
+S + S + E+ +K + +E E +IP + +++I + + E+A+ L
Sbjct: 211 KSESIESEETPEDDKKVSENEIDEIEIPIIPGNTE-KVIEIFGAATEPTKEKFEFAQRLV 269
Query: 173 VSKPVLD-FDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 231
+S D + VP MA +PF LD FQ+ +++ +E +FV AHTSAGKTV+AEYAIA
Sbjct: 270 LSADEEDEYKRLVPTMARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIA 329
Query: 232 LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
L Q HKTR +YTSPIKALSNQK+RDF++ F DVGL+ + P+ L+
Sbjct: 330 LCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGLVTGDIQLHPEAACLI 379
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 281 (104.0 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 64/129 (49%), Positives = 83/129 (64%)
Query: 154 ISNTLPKHVTQTEWAEMLDVSKPVLD-FDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 212
++ + K + + WA D S+ + D F VP MA +PFELD FQK+AI LE+ V
Sbjct: 320 VTGSSDKQLRKEGWATKGD-SQDIADRFYELVPDMAIEFPFELDNFQKEAICCLEKGESV 378
Query: 213 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPP 272
FV AHTSAGKTV+AEYA AL+ H TR +YT+PIK +SNQKYRDF F DVGL+
Sbjct: 379 FVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKF-DVGLLTGDVS 437
Query: 273 VFPDVEKLL 281
+ P+ L+
Sbjct: 438 IRPEASCLI 446
Score = 37 (18.1 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 5 KVTESSIKIYVDHRALIIPR 24
K T+ SIK +++ + LI PR
Sbjct: 51 KETKESIKKHIEEKYLI-PR 69
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 275 (101.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 72/163 (44%), Positives = 99/163 (60%)
Query: 119 ISGDAKEEQEKATVFPSNE---EENNVIPQE--VDIPILKISNTLPKH---VTQTEWAEM 170
I+ + E+ +P+++ +ENN I + V+ I++ S T+ V + ++
Sbjct: 165 INNNINEDNLTGETYPNDDSIPQENNKITNKLIVEETIIENSKTINNDDVLVLEEFGGDV 224
Query: 171 LDVSKPV-----LDFDAKVPIM-AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTV 224
+ K V + + K P++ A T+ FELD FQK++I LE + V V+AHTSAGKTV
Sbjct: 225 NCIHKCVRPQSYVHNEIKEPLIPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTV 284
Query: 225 IAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
IAEYAIAL K R IYTSPIKALSNQKYRD E F+DVGLI
Sbjct: 285 IAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLGEEFKDVGLI 327
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 245 (91.3 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 47/81 (58%), Positives = 61/81 (75%)
Query: 187 MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 246
MA T+PF+LD FQ ++ LE + V+AHTSAGKT +AEYAIA++ K R IYTSP+
Sbjct: 74 MAKTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 133
Query: 247 KALSNQKYRDFRETFQDVGLI 267
KALSNQKYR+ + F+DVGL+
Sbjct: 134 KALSNQKYRELQHEFKDVGLM 154
Score = 40 (19.1 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 276 DVEKLLEDLNIGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDATTLEIF 328
DVE+ +E L ++ I+ ++K F + +Q+ D+F+ ++ A L+ F
Sbjct: 906 DVEEYVESTIRPFLMDV-IYSWSKGASFAEI-IQMTDIFEGSIIRSARRLDEF 956
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 258 (95.9 bits), Expect = 7.9e-21, P = 7.9e-21
Identities = 64/149 (42%), Positives = 91/149 (61%)
Query: 124 KEEQEKATVFPSNEEENNVIPQEVDIP--ILKISNTLPK--HVTQTEWAEMLDVSKPVLD 179
K+E+E+ ++ +++ N+IP+ + + T H E+ D P L
Sbjct: 140 KKEREELSMI-EQQKQQNIIPENRTATGGYITAAGTSKSCIHEVLLPPGEVND--DPNL- 195
Query: 180 FDAKVPIM-AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKT 238
++ PI A T+PF+LD FQ +I +E + V V+AHTSAGKTV+AEY+IA +
Sbjct: 196 YNPPEPIKPARTYPFKLDPFQATSIACIERNESVLVSAHTSAGKTVVAEYSIATALRDGQ 255
Query: 239 RTIYTSPIKALSNQKYRDFRETFQDVGLI 267
R IYTSPIKALSNQK+RD +ETFQDVGL+
Sbjct: 256 RVIYTSPIKALSNQKFRDLQETFQDVGLM 284
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 257 (95.5 bits), Expect = 8.7e-21, P = 8.7e-21
Identities = 53/94 (56%), Positives = 66/94 (70%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A +PF+LD FQKQAI+ ++ + V V+AHTSAGKTV+A YAIA K R IYTSPIK
Sbjct: 119 AKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIK 178
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYR+ E F+DVGL+ + PD L+
Sbjct: 179 ALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLV 212
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 257 (95.5 bits), Expect = 8.8e-21, P = 8.8e-21
Identities = 62/168 (36%), Positives = 94/168 (55%)
Query: 102 GENASKFEQGLWESHEVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPIL--KISNTLP 159
G+ K + +S + DA ++ + ++ V +E+++ L K+ +
Sbjct: 33 GKTPDKAGKPQGDSASLRKRDADDDGPDEMLLGKRQKLETVSAEEINLSELMPKVKSEQV 92
Query: 160 KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTS 219
+ V +L ++ +V A +PF LD FQ++AI+ ++ + V V+AHTS
Sbjct: 93 ETVEGCTHEVVLPANEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTS 152
Query: 220 AGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AGKTV AEYAIAL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 153 AGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 200
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 248 (92.4 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 114 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 173
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 174 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 210
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 251 (93.4 bits), Expect = 3.6e-20, P = 3.6e-20
Identities = 53/94 (56%), Positives = 64/94 (68%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A +PF LD FQ +AI L+ V V+AHTSAGKTV+A YAIA+S R IYTSPIK
Sbjct: 61 AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
ALSNQKYRDF+E F DVGL+ + P+ L+
Sbjct: 121 ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLV 154
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 250 (93.1 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 55/106 (51%), Positives = 71/106 (66%)
Query: 176 PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN 235
P+ F VP A +PF LD FQ+QAI+ ++ V V+AHTSAGKTV+AEYAIA S
Sbjct: 136 PLKPFSG-VP--AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLA 192
Query: 236 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
K R IYT+PIKALSNQK+R+F + F+DVGL+ + P L+
Sbjct: 193 AKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLI 238
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 248 (92.4 bits), Expect = 7.0e-20, P = 7.0e-20
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 114 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 173
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 174 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 210
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 248 (92.4 bits), Expect = 7.0e-20, P = 7.0e-20
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 15 LPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 74
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 75 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 111
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 248 (92.4 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 116 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 175
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 176 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 212
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 248 (92.4 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 116 LPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 175
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 176 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 212
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 248 (92.4 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 53/97 (54%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 117 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 176
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 177 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 213
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 247 (92.0 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 49/80 (61%), Positives = 58/80 (72%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A WPF LD FQ+ A+ ++ V V+AHTSAGKTV+AEYAIA S + R IYTSPIK
Sbjct: 146 ARVWPFTLDPFQQVAVSSIQRGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIK 205
Query: 248 ALSNQKYRDFRETFQDVGLI 267
ALSNQKYR+F F DVGL+
Sbjct: 206 ALSNQKYREFAAEFGDVGLM 225
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 247 (92.0 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 73/174 (41%), Positives = 97/174 (55%)
Query: 115 SHEVISGDAKEEQEKATVFPSNEEENNV-IPQEVDIPILKISNTLPKHVTQTEWAEMLDV 173
S+EV + + +ATV S E+E ++ + +V + K S+T + V + V
Sbjct: 115 SNEVSIKNEGDTIPEATVADSFEQEASLQVAGKVGMTEAK-SST--EEVVELRHQVRHQV 171
Query: 174 S-KPVLDF----DAKVPIM-AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAE 227
S P D+ K PI A T+PF LD FQ +I +E V V+AHTSAGKTV+AE
Sbjct: 172 SIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAE 231
Query: 228 YAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
YA+A S K R IYTSPIKALSNQKYR+ F DVGL+ + PD L+
Sbjct: 232 YAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDATCLV 285
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 246 (91.7 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 52/97 (53%), Positives = 66/97 (68%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
L + + +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 114 LPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 173
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 174 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 210
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 245 (91.3 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 69/157 (43%), Positives = 88/157 (56%)
Query: 126 EQEKATVFPSNEEENN--VIPQE--VDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDF 180
E K VF S E E + V P E + + N L KH + + A + S P +
Sbjct: 112 EDIKPVVFDSVEIETSREVKPSEGLSNSATVDADNKLKLKHQIRHQVA--IPPSYPYVPI 169
Query: 181 -DAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR 239
+ K A T+PF LD FQ AI ++ + V V+AHTSAGKTV+AEYAIA S K R
Sbjct: 170 GEHKRKHEARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQR 229
Query: 240 TIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPD 276
IYTSPIKALSNQK+R+ + F DVGL+ + PD
Sbjct: 230 VIYTSPIKALSNQKFRELQAIFGDVGLMTGDVTINPD 266
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 239 (89.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 52/94 (55%), Positives = 63/94 (67%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PFELD FQ AI +E V V+AHTSAGKTVIAEYAIA + ++ R IYTSPIK
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIK 178
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLL 281
+LSNQKYR+ F DVGL+ + P L+
Sbjct: 179 SLSNQKYRELLSEFGDVGLMTGDVSINPSASCLI 212
Score = 43 (20.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 107 KFEQGLWESH----EVISGDAKEEQEKATVFPSNEEENNVIPQEVDIPILK 153
+F +G ES +V+ D + ++++ + F SN EE ++I D + K
Sbjct: 12 QFSEGSRESSNDELKVLLRDTETKEDEKSSF-SNSEEESIIENLSDSSVNK 61
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 241 (89.9 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 52/89 (58%), Positives = 61/89 (68%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A T+PF LD FQ AI ++ V V+AHTSAGKTV+AEYAIA S +K R IYTSPIK
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 248 ALSNQKYRDFRETFQDVGLIDDLPPVFPD 276
ALSNQKYR+ F DVGL+ + PD
Sbjct: 203 ALSNQKYRELLAEFGDVGLMTGDITINPD 231
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 226 (84.6 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 46/80 (57%), Positives = 56/80 (70%)
Query: 188 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 247
A + F+LD FQ ++ +E V V+AHTSAGKTV+AEYAIA R IYTSPIK
Sbjct: 170 ARKYAFKLDPFQSISVASIERDESVLVSAHTSAGKTVVAEYAIAHCLKRNQRVIYTSPIK 229
Query: 248 ALSNQKYRDFRETFQDVGLI 267
ALSNQK+RDF+ F DVGL+
Sbjct: 230 ALSNQKFRDFQAEFGDVGLM 249
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 223 (83.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 45/78 (57%), Positives = 57/78 (73%)
Query: 190 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 249
++PF +F ++ + L + V V+AHTSAGKTV AEYAIAL+ K R I+TSPIKAL
Sbjct: 135 SFPFSYSIFYREMVECLTINQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKAL 194
Query: 250 SNQKYRDFRETFQDVGLI 267
SNQKYR+ E FQDVGL+
Sbjct: 195 SNQKYREMYEEFQDVGLM 212
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 178 (67.7 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 55/156 (35%), Positives = 83/156 (53%)
Query: 122 DAKEEQEKATVFPSNEEENNVIPQEVDIPILKISNTLP----KHVTQTEWAEMLDVSKPV 177
D ++ E A + + +E + D + S LP + + W + + V
Sbjct: 75 DEDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDLPTESARERVEFRWQRVEKLRSLV 134
Query: 178 LDFDAK-VPI--MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ 234
DF + + I + + F +D FQ+ AI + V V+A TS+GKT+IAE A A+S
Sbjct: 135 RDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAE-AAAVST 193
Query: 235 NHKTRTI-YTSPIKALSNQKYRDFRETFQD--VGLI 267
K R + YT+P+KALSNQK+R+FRETF D VGL+
Sbjct: 194 VAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLL 229
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 158 (60.7 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 192 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 251
PF LD FQ++A LE + V V A T AGKTV+ E+A+ L+ ++ YT+P+KALSN
Sbjct: 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSN 74
Query: 252 QKYRDFRETF-QD-VGLI 267
QK+ D + +D +GL+
Sbjct: 75 QKHTDLTARYGRDQIGLL 92
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 209 HNHVFVTAHTSAGKTV-IAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLI 267
+N++F A +G T+ + +YAIAL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 144 NNYMF--ARIWSGSTITLLKYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 201
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 135 (52.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 146 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 204
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 113 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 171
Query: 205 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 261
+ ++VFV A T +GKT+ AE+AI L QN + R +Y +P++AL+ Q Y D+ E F
Sbjct: 172 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKF 231
Query: 262 QD 263
QD
Sbjct: 232 QD 233
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 135 (52.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 146 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 204
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 1279 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1337
Query: 205 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 261
+ ++VFV A T +GKT+ AE+AI L QN + R +Y +P++AL+ Q Y D+ E F
Sbjct: 1338 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKF 1397
Query: 262 QD 263
QD
Sbjct: 1398 QD 1399
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 135 (52.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 146 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 204
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 1282 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1340
Query: 205 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 261
+ ++VFV A T +GKT+ AE+AI L QN + R +Y +P++AL+ Q Y D+ E F
Sbjct: 1341 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKF 1400
Query: 262 QD 263
QD
Sbjct: 1401 QD 1402
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 146 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 204
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 1279 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1337
Query: 205 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 261
+ ++VFV A T +GKT+ AE+AI L Q+ + R +Y +P++AL+ Q Y D+ E F
Sbjct: 1338 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKF 1397
Query: 262 QD 263
QD
Sbjct: 1398 QD 1399
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 210 NHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ--DVG 265
N+V + A T +GKT++AE AI AL+QN K + +Y +P+KAL ++ D+ + FQ +G
Sbjct: 1353 NNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLG 1412
Query: 266 L-IDDLP-PVFPDVEKLLE 282
L + +L V PD++ + E
Sbjct: 1413 LKVVELTGDVTPDIQAIRE 1431
>UNIPROTKB|Q8MJK1 [details] [associations]
symbol:CBY1 "Protein chibby homolog 1" species:9913 "Bos
taurus" [GO:0055007 "cardiac muscle cell differentiation"
evidence=ISS] [GO:0045444 "fat cell differentiation" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0090090 "negative regulation of
canonical Wnt receptor signaling pathway" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0042384
"cilium assembly" evidence=IEA] [GO:0008104 "protein localization"
evidence=IEA] [GO:0008013 "beta-catenin binding" evidence=IEA]
[GO:0005932 "microtubule basal body" evidence=IEA] [GO:0005802
"trans-Golgi network" evidence=IEA] GO:GO:0005794 GO:GO:0045892
GO:GO:0008104 GO:GO:0016607 GO:GO:0055007 GO:GO:0005802
GO:GO:0090090 GO:GO:0005932 GO:GO:0042384 GO:GO:0045444
EMBL:AF393210 EMBL:BC120055 IPI:IPI00693735 RefSeq:NP_777164.1
UniGene:Bt.17918 STRING:Q8MJK1 Ensembl:ENSBTAT00000008651
GeneID:282859 KEGG:bta:282859 CTD:25776 eggNOG:NOG39404
GeneTree:ENSGT00510000047043 HOGENOM:HOG000006694
HOVERGEN:HBG050816 InParanoid:Q8MJK1 OMA:LRKRNQQ OrthoDB:EOG4JT072
NextBio:20806388 Uniprot:Q8MJK1
Length = 127
Score = 95 (38.5 bits), Expect = 0.00039, P = 0.00039
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 98 IQLGGENASKFEQGLWESHEVISG--DAKEEQEKATVFPSNEEENNVIPQEVDIPILKIS 155
+ L G++ KFE G W + ISG D +E Q EEENN++ +VDI + +S
Sbjct: 45 MNLAGQSL-KFENGQWIAETGISGGVDRREAQRLRRRNQQLEEENNLLRLKVDILLDMLS 103
Query: 156 NTLPK-HVTQTEWAEMLDVSK 175
T + H+ + E E+ VS+
Sbjct: 104 ETTAESHLMEKELDELKSVSR 124
>UNIPROTKB|B2CAW6 [details] [associations]
symbol:CBY1 "PKD2 interactor" species:9823 "Sus scrofa"
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] [GO:0055007 "cardiac muscle cell
differentiation" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045444 "fat cell
differentiation" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005932 "microtubule basal
body" evidence=IEA] [GO:0005802 "trans-Golgi network" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634 GO:GO:0045892
GO:GO:0008104 GO:GO:0055007 GO:GO:0005802 GO:GO:0090090
GO:GO:0005932 GO:GO:0042384 GO:GO:0045444 CTD:25776 eggNOG:NOG39404
GeneTree:ENSGT00510000047043 HOGENOM:HOG000006694
HOVERGEN:HBG050816 OMA:LRKRNQQ OrthoDB:EOG4JT072 EMBL:CU655907
EMBL:EU366153 RefSeq:NP_001121928.1 UniGene:Ssc.96515 STRING:B2CAW6
Ensembl:ENSSSCT00000024091 GeneID:100144768 KEGG:ssc:100144768
Uniprot:B2CAW6
Length = 127
Score = 94 (38.1 bits), Expect = 0.00050, P = 0.00050
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 98 IQLGGENASKFEQGLWESHEVISG--DAKEEQEKATVFPSNEEENNVIPQEVDIPILKIS 155
+ L G++ KFE G W + ISG D +E Q EEENN++ +VDI + +S
Sbjct: 45 MNLAGQSL-KFENGQWIAESGISGGVDRREAQRLRRRNQQLEEENNLLRLKVDILLDMLS 103
Query: 156 NTLPK-HVTQTEWAEMLDVSK 175
T + H+ + E E+ VS+
Sbjct: 104 ETTAESHLMEKELDELKGVSQ 124
>MGI|MGI:1920989 [details] [associations]
symbol:Cby1 "chibby homolog 1 (Drosophila)" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005802 "trans-Golgi network"
evidence=ISO] [GO:0005932 "microtubule basal body" evidence=IDA]
[GO:0008013 "beta-catenin binding" evidence=ISO] [GO:0008104
"protein localization" evidence=ISO] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=ISO] [GO:0042384 "cilium
assembly" evidence=IMP] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045444 "fat cell differentiation" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IMP] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IMP] MGI:MGI:1920989
GO:GO:0005794 GO:GO:0045892 GO:GO:0008104 GO:GO:0016607
GO:GO:0055007 GO:GO:0005802 GO:GO:0090090 GO:GO:0005932
GO:GO:0042384 GO:GO:0045444 CTD:25776 eggNOG:NOG39404
GeneTree:ENSGT00510000047043 HOGENOM:HOG000006694
HOVERGEN:HBG050816 OMA:LRKRNQQ OrthoDB:EOG4JT072 EMBL:AF331040
EMBL:AK003719 EMBL:BC005733 IPI:IPI00133582 RefSeq:NP_082910.1
UniGene:Mm.294441 ProteinModelPortal:Q9D1C2 STRING:Q9D1C2
PhosphoSite:Q9D1C2 PaxDb:Q9D1C2 PRIDE:Q9D1C2
Ensembl:ENSMUST00000023064 GeneID:73739 KEGG:mmu:73739
UCSC:uc007wuc.1 InParanoid:Q9D1C2 NextBio:338953 Bgee:Q9D1C2
CleanEx:MM_CBY1 Genevestigator:Q9D1C2 GermOnline:ENSMUSG00000022428
Uniprot:Q9D1C2
Length = 127
Score = 93 (37.8 bits), Expect = 0.00064, P = 0.00064
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 98 IQLGGENASKFEQGLWESHEVISG--DAKEEQEKATVFPSNEEENNVIPQEVDIPILKIS 155
+ L G++ KFE G W + VISG D +E Q EEENN++ +VDI + +S
Sbjct: 45 MNLAGQSL-KFENGQWVADSVISGGVDRRETQRLRKRNQQLEEENNLLRLKVDILLDMLS 103
Query: 156 NTLPK-HVTQTEWAEM 170
T + H+ E E+
Sbjct: 104 ETTAESHLKDKELDEL 119
>RGD|708481 [details] [associations]
symbol:Cby1 "chibby homolog 1 (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005802 "trans-Golgi network"
evidence=IEA;ISO] [GO:0005932 "microtubule basal body"
evidence=IEA;ISO] [GO:0008013 "beta-catenin binding"
evidence=IEA;ISO] [GO:0008104 "protein localization"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=ISO] [GO:0042384 "cilium assembly" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
[GO:0045444 "fat cell differentiation" evidence=ISO;ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA;ISO] [GO:0055007 "cardiac muscle cell differentiation"
evidence=ISO;ISS] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] RGD:708481
GO:GO:0005794 GO:GO:0045892 GO:GO:0008104 GO:GO:0016607
GO:GO:0055007 GO:GO:0005802 GO:GO:0090090 GO:GO:0005932
GO:GO:0042384 GO:GO:0045444 CTD:25776 eggNOG:NOG39404
GeneTree:ENSGT00510000047043 HOGENOM:HOG000006694
HOVERGEN:HBG050816 OMA:LRKRNQQ OrthoDB:EOG4JT072 EMBL:AF393211
IPI:IPI00203281 RefSeq:NP_663709.1 UniGene:Rn.229691 STRING:Q8K4I6
Ensembl:ENSRNOT00000018787 GeneID:246768 KEGG:rno:246768
UCSC:RGD:708481 InParanoid:Q8K4I6 NextBio:623835
Genevestigator:Q8K4I6 GermOnline:ENSRNOG00000013892 Uniprot:Q8K4I6
Length = 127
Score = 93 (37.8 bits), Expect = 0.00064, P = 0.00064
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 98 IQLGGENASKFEQGLWESHEVISG--DAKEEQEKATVFPSNEEENNVIPQEVDIPILKIS 155
+ L G++ KFE G W + VISG D +E Q EEENN++ +VDI + +S
Sbjct: 45 MNLAGQSL-KFENGQWVADSVISGGVDRRETQRLRKRNQQLEEENNLLRLKVDILLDMLS 103
Query: 156 NTLPK-HVTQTEWAEM 170
T + H+ E E+
Sbjct: 104 ETTAESHLKDKELDEL 119
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 333 333 0.00091 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 597 (63 KB)
Total size of DFA: 236 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.50u 0.15s 30.65t Elapsed: 00:00:02
Total cpu time: 30.51u 0.15s 30.66t Elapsed: 00:00:02
Start: Thu Aug 15 17:33:57 2013 End: Thu Aug 15 17:33:59 2013