RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2760
(333 letters)
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 44.9 bits (105), Expect = 5e-06
Identities = 14/69 (20%), Positives = 19/69 (27%)
Query: 198 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 257
QK ++ TA T GKT R P L Q
Sbjct: 47 IQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETI 106
Query: 258 RETFQDVGL 266
R+ + G+
Sbjct: 107 RKYAEKAGV 115
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 44.1 bits (103), Expect = 1e-05
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 206 LEEHNHVFVTAHTSAGKT-VIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 261
+ + H AGKT + + RT+ +P + ++ + R
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 62
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 41.0 bits (95), Expect = 3e-05
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 263
+ + A T +GK+ A A + + +P A + +
Sbjct: 5 PQSFQVAHLHAPTGSGKSTKVPAAYA---AQGYKVLVLNPSVAATLGFGAYMSKAHGV 59
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 40.7 bits (94), Expect = 8e-05
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 194 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 253
EL Q +A+ K+ ++ + T+AGKT++AE A+ +++Y P++AL+ +K
Sbjct: 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEK 84
Query: 254 YRDFRE 259
Y F++
Sbjct: 85 YESFKK 90
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 37.8 bits (87), Expect = 0.001
Identities = 15/96 (15%), Positives = 29/96 (30%)
Query: 171 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 230
+ T + + + V GKT +A A
Sbjct: 38 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 97
Query: 231 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 266
L+ ++ + P L+ Q Y +FR+ F + +
Sbjct: 98 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 133
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 35.6 bits (81), Expect = 0.004
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 184 VPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 243
+P L +Q++A+ + + T +GKT +A AI T T+
Sbjct: 60 IPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI---NELSTPTLIV 116
Query: 244 SPIKALSNQKYRDFRETFQD 263
P AL+ Q ++
Sbjct: 117 VPTLALAEQWKERLGIFGEE 136
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.1 bits (74), Expect = 0.019
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 206 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262
L++ + H AGKT I + + + ++
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD 60
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 33.2 bits (74), Expect = 0.029
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 193 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSN 251
+ ++Q+ K +E N + T GKT+IA + + + +P K L
Sbjct: 8 IQPRIYQEVIYAKCKETN-CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66
Query: 252 QKYRDFRETFQDVGLIDDLPPVFPDVEKLLEDLNIGGLDELSIHDFNKHLKFWK 305
Q FR F E+ + + + L +
Sbjct: 67 QHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR 120
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 32.7 bits (73), Expect = 0.039
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 168 AEMLDVSKPVLDFDAKVPIMAHTWPFE-LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIA 226
AE+L++ ++ T+ ++ Q++ I + V T GK++
Sbjct: 4 AEVLNLESGAKQ------VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCY 57
Query: 227 EYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 262
+ T+ SP+ +L + +
Sbjct: 58 QIPA---LLLNGLTVVVSPLISLMKDQVDQLQANGV 90
>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 206
Score = 26.9 bits (59), Expect = 2.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 238 TRTIYTSPIKALSNQKYRDF 257
TR IYT+P+ + +R
Sbjct: 9 TREIYTNPVLENFDGSFRGM 28
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 26.8 bits (58), Expect = 3.6
Identities = 18/158 (11%), Positives = 43/158 (27%), Gaps = 3/158 (1%)
Query: 166 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVI 225
+ ++ + V + + + +QK A ++ GKT
Sbjct: 120 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 179
Query: 226 AEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLIDDLPPVFPDVEKLLEDLN 285
+A + A + + E+ + LP +++ ED +
Sbjct: 180 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK--ALRQLPLTDEQKKRIPEDAS 237
Query: 286 IGGLDELSIHDFNKHLKFWKPKVQLDDLFDWTMASDAT 323
+ ++ L+ D+ AS
Sbjct: 238 TLHRLLGAQPG-SQRLRHHAGNPLHLDVLVVDEASMID 274
>d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis tenebrionis, CRYIIIA
(BT13) [TaxId: 1444]}
Length = 210
Score = 25.7 bits (56), Expect = 6.9
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 238 TRTIYTSPIKALSNQKYRDFRETFQDV 264
TR + T PI ++N R + TF ++
Sbjct: 11 TRDVLTDPIVGVNN--LRGYGTTFSNI 35
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 80
Score = 24.3 bits (53), Expect = 6.9
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 13/61 (21%)
Query: 155 SNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFV 214
+ T E A ++ S+ L+ K+ I + H +
Sbjct: 24 GVIVSVDFTVEEIANLIGSSRQTTS-------------TALNSLIKEGYISRQGRGHYTI 70
Query: 215 T 215
Sbjct: 71 P 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.411
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,297,171
Number of extensions: 62508
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 15
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)