BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2762
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/315 (60%), Positives = 231/315 (73%), Gaps = 14/315 (4%)
Query: 1 MVSQLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIA 60
MVS +N VDT HEDMIHDA+MDY G LATCSSD +VK+F++ RN + LIA
Sbjct: 1 MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDV-RNGGQ--------ILIA 51
Query: 61 ELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAW 120
+L+GH GPVWQVAWAHP +G +LASCSYDRKVIIWR +NG W K +E+ HDSSVNS+ W
Sbjct: 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW 111
Query: 121 APKEFGLILACGSSDGTISFLTYMSDTNSWESRKI-AAHTIGCNAVSWGPGIGSLSELDL 179
AP ++GLILACGSSDG IS LTY + WE +KI AHTIGCNAVSW P + S +D
Sbjct: 112 APHDYGLILACGSSDGAISLLTYTGE-GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170
Query: 180 KGSKLGGVAKRLVSGGCDNLIKIWKQEGD-KWIEETKLENHSDWVRDVAWAPSWGLSKCM 238
+ KR SGGCDNLIK+WK+E D +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230
Query: 239 IASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 296
IASCSQD +V IWT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LWK
Sbjct: 231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290
Query: 297 ENTDGAWQCITEMGK 311
E+ DG W CI+++ K
Sbjct: 291 ESVDGQWVCISDVNK 305
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 261 bits (666), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 191/309 (61%), Gaps = 22/309 (7%)
Query: 7 LVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHS 66
++ H +MIHDA MDY G +ATCSSD T+K+F ++ K LI L GH
Sbjct: 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK---------LIDTLTGHE 53
Query: 67 GPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFG 126
GPVW+V WAHP+FGT+LASCSYD KV+IW+ +NG W + + H +SVNS+ WAP E+G
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113
Query: 127 LILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLG- 185
+L SSDG +S + + + + I AH IG N+ SW P ++ G G
Sbjct: 114 PMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPAT-----IEEDGEHNGT 167
Query: 186 GVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+++ V+GG DNL+KIWK D ++ E+ LE HSDWVRDVAW+P+ L + +AS S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT-VLLRSYMASVS 226
Query: 244 QDRKVIIWTS-NDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
QDR IIWT N+ W ++ F DV+W SWSL+G++L +S GDN V+LWKEN +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286
Query: 301 GAWQCITEM 309
G W+ E+
Sbjct: 287 GKWEPAGEV 295
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 260 bits (665), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 191/309 (61%), Gaps = 22/309 (7%)
Query: 7 LVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHS 66
++ H ++IHDA +DY G LATCSSD T+K+F ++ K LI L GH
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---------LIDTLTGHE 53
Query: 67 GPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFG 126
GPVW+V WAHP+FGT+LASCSYD KV+IW+ +NG W + + H +SVNS+ WAP E+G
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113
Query: 127 LILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLG- 185
+L SSDG +S + + + + I AH IG N+ SW P ++ G G
Sbjct: 114 PLLLVASSDGKVSVVEF-KENGTTSPIIIDAHAIGVNSASWAPAT-----IEEDGEHNGT 167
Query: 186 GVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+++ V+GG DNL+KIWK D ++ E+ LE HSDWVRDVAW+P+ L + +AS S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVS 226
Query: 244 QDRKVIIWTS-NDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
QDR IIWT N+ W ++ F DV+W SWSL+G++L +S GDN V+LWKEN +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286
Query: 301 GAWQCITEM 309
G W+ E+
Sbjct: 287 GKWEPAGEV 295
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 191/309 (61%), Gaps = 22/309 (7%)
Query: 7 LVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHS 66
++ H ++IHDA +DY G LATCSSD T+K+F ++ K LI L GH
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---------LIDTLTGHE 55
Query: 67 GPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFG 126
GPVW+V WAHP+FGT+LASCSYD KV+IW+ +NG W + + H +SVNS+ WAP E+G
Sbjct: 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115
Query: 127 LILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLG- 185
+L SSDG +S + + + + I AH IG N+ SW P ++ G G
Sbjct: 116 PLLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPAT-----IEEDGEHNGT 169
Query: 186 GVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+++ V+GG DNL+KIWK D ++ E+ LE HSDWVRDVAW+P+ L + +AS S
Sbjct: 170 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT-VLLRSYLASVS 228
Query: 244 QDRKVIIWTS-NDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
QDR IIWT N+ W ++ F DV+W SWSL+G++L +S GDN V+LWKEN +
Sbjct: 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288
Query: 301 GAWQCITEM 309
G W+ E+
Sbjct: 289 GKWEPAGEV 297
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 192/309 (62%), Gaps = 22/309 (7%)
Query: 7 LVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHS 66
++ H ++IHDA +DY G LATCSSD T+K+F ++ K LI L GH
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---------LIDTLTGHE 53
Query: 67 GPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFG 126
GPVW+V WAHP+FGT+LASCSYD KV+IW+ +NG W + + H +SVNS+ WAP E+G
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113
Query: 127 LILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLG- 185
+L SSDG +S + + + + I AH IG N+ SW P + ++ G G
Sbjct: 114 PLLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAP-----ATIEEDGEHNGT 167
Query: 186 GVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+++ V+GG DNL+KIWK D ++ E+ LE HSDWVRDVAW+P+ L + +AS S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT-VLLRSYLASVS 226
Query: 244 QDRKVIIWTS-NDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
QDR IIWT N+ W ++ F DV+W SWSL+G++L +S GDN V+LWKEN +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286
Query: 301 GAWQCITEM 309
G W+ E+
Sbjct: 287 GKWEPAGEV 295
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 137/309 (44%), Positives = 185/309 (59%), Gaps = 22/309 (7%)
Query: 7 LVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHS 66
++ H + IHDA DY G ATCSSD T+K+F ++ K LI L GH
Sbjct: 3 VIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHK---------LIDTLTGHE 53
Query: 67 GPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFG 126
GPVW+V WAHP+FGT+LASCSYD KV IW+ +NG W + + H +SVNS+ WAP E+G
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113
Query: 127 LILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLG- 185
L SSDG +S + + + + I AH IG N+ SW P ++ G G
Sbjct: 114 PXLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPAT-----IEEDGEHNGT 167
Query: 186 GVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+++ V+GG DNL+KIWK D ++ E+ LE HSDWVRDVAW+P+ L + AS S
Sbjct: 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT-VLLRSYXASVS 226
Query: 244 QDRKVIIWTS-NDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
QDR IIWT N+ W ++ F DV+W SWSL+G++L +S GDN V+LWKEN +
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286
Query: 301 GAWQCITEM 309
G W+ E+
Sbjct: 287 GKWEPAGEV 295
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 152/365 (41%), Gaps = 82/365 (22%)
Query: 4 QLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELK 63
+ D+GH+D++HD D+ G ++ATCSSD +KVF LD++ + L +
Sbjct: 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD-------TSNWELSDSWR 54
Query: 64 GHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGN-------WFKYYEYNNHDSSVN 116
H + + WA P++G ++AS SYD+ V +W D W K N+ S+
Sbjct: 55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY 114
Query: 117 SIAWAPKEFGLILACGSSDGTISFLTYM--SDTNSWE--------SRKIAAHTIGCNAVS 166
S+ +AP GL LAC +DG + + SD SW S A H +S
Sbjct: 115 SVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS 174
Query: 167 WGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDV 226
W P S +L + + + +R G D + + KL H +R +
Sbjct: 175 WCPSRFSPEKLAVSALEQAIIYQR----GKDGKLHV----------AAKLPGHKSLIRSI 220
Query: 227 AWAPSWGLSKCMIASCSQDRKVIIW---------TSNDYVTWTPFIMNTFD--------- 268
+WAPS G +IA+ +D ++ I+ S + +T + N+ D
Sbjct: 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280
Query: 269 --------------------------DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 302
VW+VSW+LTG IL+ + D V LWK
Sbjct: 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340
Query: 303 WQCIT 307
++C++
Sbjct: 341 FKCMS 345
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 1 MVSQLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIA 60
+ S+ +L ++ D D +MD G S +T + L NL+ + L++
Sbjct: 254 LASEESLTNSNMFDNSADVDMDAQGR-----SDSNTEEKAELQSNLQVE--------LLS 300
Query: 61 ELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFK 104
E H+G VW V+W GT+L+S D KV +W+ N FK
Sbjct: 301 EHDDHNGEVWSVSWN--LTGTILSSAGDDGKVRLWKATYSNEFK 342
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 152/364 (41%), Gaps = 82/364 (22%)
Query: 5 LNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKG 64
+ D+GH+D++HD D+ G ++ATCSSD +KVF LD++ + L +
Sbjct: 1 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD-------TSNWELSDSWRA 53
Query: 65 HSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGN-------WFKYYEYNNHDSSVNS 117
H + + WA P++G ++AS SYD+ V +W D W K N+ S+ S
Sbjct: 54 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 113
Query: 118 IAWAPKEFGLILACGSSDGTISFLTYM--SDTNSWE--------SRKIAAHTIGCNAVSW 167
+ +AP GL LAC +DG + + SD SW S A H +SW
Sbjct: 114 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 173
Query: 168 GPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVA 227
P S +L + + + +R G D + + KL H +R ++
Sbjct: 174 CPSRFSPEKLAVSALEQAIIYQR----GKDGKLHV----------AAKLPGHKSLIRSIS 219
Query: 228 WAPSWGLSKCMIASCSQDRKVIIW---------TSNDYVTWTPFIMNTFD---------- 268
WAPS G +IA+ +D ++ I+ S + +T + N+ D
Sbjct: 220 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD 279
Query: 269 -------------------------DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAW 303
VW+VSW+LTG IL+ + D V LWK +
Sbjct: 280 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 339
Query: 304 QCIT 307
+C++
Sbjct: 340 KCMS 343
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 1 MVSQLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIA 60
+ S+ +L ++ D D +MD G S +T + L NL+ + L++
Sbjct: 252 LASEESLTNSNMFDNSADVDMDAQGR-----SDSNTEEKAELQSNLQVE--------LLS 298
Query: 61 ELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFK 104
E H+G VW V+W GT+L+S D KV +W+ N FK
Sbjct: 299 EHDDHNGEVWSVSWN--LTGTILSSAGDDGKVRLWKATYSNEFK 340
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 150/362 (41%), Gaps = 86/362 (23%)
Query: 9 DTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGP 68
D+GH+D++HD D+ G ++ATCSSD +KVF LD++ + L + H
Sbjct: 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD-------TSNWELSDSWRAHDSS 59
Query: 69 VWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGN-------WFKYYEYNNHDSSVNSIAWA 121
+ + WA P++G ++AS SYD+ V +W D W K N+ S+ S+ +A
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 122 PKEFGLILACGSSDGTISFLTYM--SDTNSWE--------SRKIAAHTIGCNAVSWGPGI 171
P GL LAC +DG + + SD SW S A H +SW P
Sbjct: 120 PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSR 179
Query: 172 GSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPS 231
S +L + + + +R G D + + KL H +R ++WAPS
Sbjct: 180 FSPEKLAVSALEQAIIYQR----GKDGKLHV----------AAKLPGHKSLIRSISWAPS 225
Query: 232 WGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI-------MNTFDDV-------------- 270
G +IA+ +D ++ I+ + + +P N FD+
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKITEKL--SPLASEESLTNSNXFDNSADVDXDAQGRSDSN 283
Query: 271 -------------------------VWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQC 305
VW+VSW+LTG IL+ + D V LWK ++C
Sbjct: 284 TEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343
Query: 306 IT 307
+
Sbjct: 344 XS 345
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 121/295 (41%), Gaps = 50/295 (16%)
Query: 4 QLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELK 63
QL TGH + G +A+ S D TVK++N RN G L+ L
Sbjct: 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RN----------GQLLQTLT 136
Query: 64 GHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPK 123
GHS VW VA++ P G +AS S D+ V +W N N H SSV +A++P
Sbjct: 137 GHSSSVWGVAFS-PD-GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPD 191
Query: 124 EFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSK 183
G +A S D T+ + N + + H+ V++ P
Sbjct: 192 --GQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPD------------- 232
Query: 184 LGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+ + S D +K+W + G + +T L HS V VA+ P IAS S
Sbjct: 233 ----GQTIASASDDKTVKLWNRNGQ--LLQT-LTGHSSSVNGVAFRPD----GQTIASAS 281
Query: 244 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 298
D+ V +W N + T + VW V++S G + + D +V LW N
Sbjct: 282 DDKTVKLWNRNGQLLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 122/295 (41%), Gaps = 50/295 (16%)
Query: 4 QLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELK 63
QL TGH + G +A+ S D TVK++N RN G L+ L
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RN----------GQLLQTLT 177
Query: 64 GHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPK 123
GHS VW VA++ P G +AS S D+ V +W N N H SSV +A++P
Sbjct: 178 GHSSSVWGVAFS-PD-GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPD 232
Query: 124 EFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSK 183
G +A S D T+ + N + + H+ N V++ P
Sbjct: 233 --GQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVNGVAFRPD------------- 273
Query: 184 LGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 243
+ + S D +K+W + G + +T L HS V VA++P IAS S
Sbjct: 274 ----GQTIASASDDKTVKLWNRNGQ--LLQT-LTGHSSSVWGVAFSPD----GQTIASAS 322
Query: 244 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 298
D+ V +W N T + VW V++S G + + D +V LW N
Sbjct: 323 DDKTVKLWNRNGQHLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 130/312 (41%), Gaps = 49/312 (15%)
Query: 4 QLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELK 63
QL TGH + G +A+ S D TVK++N RN G + L
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RN----------GQHLQTLT 341
Query: 64 GHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPK 123
GHS VW VA++ P G +AS S D+ V +W N N H SSV +A++P
Sbjct: 342 GHSSSVWGVAFS-PD-GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPD 396
Query: 124 EFGLILACGSSDGTISF----------LTYMSDT-----NSWESRKIAAHTIGCNAVSWG 168
G +A S D T+ LT S + S + + IA+ + W
Sbjct: 397 --GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 169 PGIGSLSELDLKGSKLGGVA-----KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWV 223
L L S + GVA + + S D +K+W + G + +T L HS V
Sbjct: 455 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQT-LTGHSSSV 511
Query: 224 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL 283
R VA++P IAS S D+ V +W N + T + VW V++S G +
Sbjct: 512 RGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVAFSPDGQTI 564
Query: 284 TVSCGDNSVSLW 295
+ D +V LW
Sbjct: 565 ASASSDKTVKLW 576
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 130/315 (41%), Gaps = 49/315 (15%)
Query: 4 QLNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELK 63
QL TGH + G +A+ S D TVK++N RN G L+ L
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RN----------GQLLQTLT 218
Query: 64 GHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPK 123
GHS V VA++ P G +AS S D+ V +W N N H SSVN +A+ P
Sbjct: 219 GHSSSVRGVAFS-PD-GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVNGVAFRPD 273
Query: 124 EFGLILACGSSDGTISF----------LTYMSDT-----NSWESRKIAAHTIGCNAVSWG 168
G +A S D T+ LT S + S + + IA+ + W
Sbjct: 274 --GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 169 PGIGSLSELDLKGSKLGGVA-----KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWV 223
L L S + GVA + + S D +K+W + G + +T L HS V
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQT-LTGHSSSV 388
Query: 224 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL 283
R VA++P IAS S D+ V +W N + T + VW V++S +
Sbjct: 389 RGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVAFSPDDQTI 441
Query: 284 TVSCGDNSVSLWKEN 298
+ D +V LW N
Sbjct: 442 ASASDDKTVKLWNRN 456
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 126/307 (41%), Gaps = 49/307 (15%)
Query: 12 HEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQ 71
H + G +A+ S D TVK++N RN G L+ L GHS VW
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN--RN----------GQLLQTLTGHSSSVWG 62
Query: 72 VAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILAC 131
VA++ P G +AS S D+ V +W N N H SSV +A++P G +A
Sbjct: 63 VAFS-PD-GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPD--GQTIAS 115
Query: 132 GSSDGTISF----------LTYMSDT-----NSWESRKIAAHTIGCNAVSWGPGIGSLSE 176
S D T+ LT S + S + + IA+ + W L
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175
Query: 177 LDLKGSKLGGVA-----KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPS 231
L S + GVA + + S D +K+W + G + +T L HS VR VA++P
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQT-LTGHSSSVRGVAFSP- 231
Query: 232 WGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS 291
IAS S D+ V +W N + T + V V++ G + + D +
Sbjct: 232 ---DGQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSVNGVAFRPDGQTIASASDDKT 285
Query: 292 VSLWKEN 298
V LW N
Sbjct: 286 VKLWNRN 292
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 98/238 (41%), Gaps = 38/238 (15%)
Query: 61 ELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAW 120
L+ HS V VA++ P G +AS S D+ V +W N N H SSV +A+
Sbjct: 11 RLEAHSSSVRGVAFS-PD-GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAF 65
Query: 121 APKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLK 180
+P G +A S D T+ + N + + H+ V++ P
Sbjct: 66 SPD--GQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPD---------- 109
Query: 181 GSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 240
+ + S D +K+W + G + +T L HS V VA++P IA
Sbjct: 110 -------GQTIASASDDKTVKLWNRNGQ--LLQT-LTGHSSSVWGVAFSPD----GQTIA 155
Query: 241 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 298
S S D+ V +W N + T + VW V++S G + + D +V LW N
Sbjct: 156 SASDDKTVKLWNRNGQLLQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 212 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV 271
E +LE HS VR VA++P IAS S D+ V +W N + T + V
Sbjct: 8 ERNRLEAHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQT---LTGHSSSV 60
Query: 272 WNVSWSLTGDILTVSCGDNSVSLWKEN 298
W V++S G + + D +V LW N
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRN 87
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 127/291 (43%), Gaps = 49/291 (16%)
Query: 25 GLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLA 84
G LA+C D ++++ + DS K L +GH V +VAW+ G LA
Sbjct: 28 GTLLASCGGDRRIRIWGTE-----GDSWICKSVLS---EGHQRTVRKVAWS--PCGNYLA 77
Query: 85 SCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYM 144
S S+D IW+ + ++ H++ V S+AWAP G +LA S D ++ ++ +
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSV-WVWEV 134
Query: 145 SDTNSWESRKIA-AHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIW 203
+ + +E + +HT V W P + L S D+ +K++
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPS-----------------QELLASASYDDTVKLY 177
Query: 204 KQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW------------ 251
++E D W+ LE H V +A+ PS +ASCS DR V IW
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQ----RLASCSDDRTVRIWRQYLPGNEQGVA 233
Query: 252 TSNDYVTWTPF--IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
S +W + +++++W L +CGD+++ +++E+ +
Sbjct: 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 26/248 (10%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GHE+ + G LATCS D +V V+ +D ++D + ++ L H+ V
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD----EEDEYE----CVSVLNSHTQDVK 154
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V W HP LLAS SYD V ++R + +W H+S+V S+A+ P G LA
Sbjct: 155 HVVW-HPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS--GQRLA 210
Query: 131 CGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKR 190
S D T+ N + + + G S + D+ +L G
Sbjct: 211 SCSDDRTVRIWRQYLPGNE-QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA--- 266
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKL-------ENHSDWVRDVAWAPSWGLSKCMIASCS 243
L + D+ I++++++ + ++ + HS V VAW P ++ASCS
Sbjct: 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK---EPGLLASCS 323
Query: 244 QDRKVIIW 251
D +V W
Sbjct: 324 DDGEVAFW 331
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 43/268 (16%)
Query: 58 LIAELKGHS-GPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWF-KYYEYNNHDSSV 115
L+ + H W +AW +P GTLLASC DR++ IW + +W K H +V
Sbjct: 7 LLGRVPAHPDSRCWFLAW-NPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV 64
Query: 116 NSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWES-RKIAAHTIGCNAVSWGPGIGSL 174
+AW+P G LA S D T + + + +E + H +V+W P
Sbjct: 65 RKVAWSP--CGNYLASASFDATTCI--WKKNQDDFECVTTLEGHENEVKSVAWAPS---- 116
Query: 175 SELDLKGSKLGGVAKRLVSGGCDNLIKIWK-QEGDKWIEETKLENHSDWVRDVAWAPSWG 233
G+ L ++ D + +W+ E D++ + L +H+ V+ V W PS
Sbjct: 117 ------GNLLATCSR-------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 234 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVS 293
L +AS S D V ++ + + + VW++++ +G L D +V
Sbjct: 164 L----LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 294 LWKE------------NTDGAWQCITEM 309
+W++ +D +W+CI +
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCICTL 247
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 249
L S G D I+IW EGD WI ++ L E H VR VAW+P +AS S D
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN----YLASASFDATTC 86
Query: 250 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 309
IW N + ++ V +V+W+ +G++L D SV +W+ + + ++C++ +
Sbjct: 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 310 GKTSE 314
++
Sbjct: 147 NSHTQ 151
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 112 DSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAA--HTIGCNAVSWGP 169
DS +AW P G +LA D I + ++ +SW + + + H V+W P
Sbjct: 16 DSRCWFLAWNPA--GTLLASCGGDRRIRI--WGTEGDSWICKSVLSEGHQRTVRKVAWSP 71
Query: 170 GIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWA 229
L S D IWK+ D + T LE H + V+ VAWA
Sbjct: 72 -----------------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 230 PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF-IMNTFDDVVWNVSWSLTGDILTVSCG 288
PS L +A+CS+D+ V +W ++ + ++N+ V +V W + ++L +
Sbjct: 115 PSGNL----LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170
Query: 289 DNSVSLWKENTDGAWQCITEMGKTS 313
D++V L++E D C T G S
Sbjct: 171 DDTVKLYREEEDDWVCCATLEGHES 195
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFN--LDRNLKKDDSHSQKGT--LIAELKG-H 65
GHE + D G LA+CS D TV+++ L N + + I L G H
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Query: 66 SGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNW------FKYYEYNNHDSSVNSIA 119
S ++ +AW G L +C D + N + + + H VN +A
Sbjct: 252 SRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 120 WAPKEFGLILACGSSDGTISFLTYM 144
W PKE GL+ +C S DG ++F Y
Sbjct: 311 WNPKEPGLLASC-SDDGEVAFWKYQ 334
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 116/289 (40%), Gaps = 31/289 (10%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH D + D D+ G LA+CS+D T+K+++ Q I + GH V
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDF-----------QGFECIRTMHGHDHNVS 196
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V+ P G + S S D+ + +W G K + H V + P + G ++A
Sbjct: 197 SVSIM-PN-GDHIVSASRDKTIKMWEVQTGYCVK--TFTGHREWVRMV--RPNQDGTLIA 250
Query: 131 CGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGS---KLGGV 187
S+D T+ + E R+ H + C +SW P S + GS K G
Sbjct: 251 SCSNDQTVRVWVVATKECKAELRE-HRHVVEC--ISWAPESSYSSISEATGSETKKSGKP 307
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 247
L+SG D IK+W + L H +WVR V + I SC+ D+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCL--MTLVGHDNWVRGVLFHSGGKF----ILSCADDKT 361
Query: 248 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 296
+ +W + +N + V ++ + T + D +V +W+
Sbjct: 362 LRVWDYKNKRCMK--TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 250
+VS D IK+W E + E L+ H+D V+D+++ S L +ASCS D + +
Sbjct: 123 MVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSGKL----LASCSADMTIKL 176
Query: 251 WTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 299
W + M+ D V +VS GD + + D ++ +W+ T
Sbjct: 177 WDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GHE+ + G YLATCS D +V ++ D + ++ I+ L+ HS V
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES-------GEEYECISVLQEHSQDVK 157
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V W HP LLAS SYD V IW+ + +W N H+ +V S + E L
Sbjct: 158 HVIW-HPS-EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 131 CGSSDGTISFLTYMSD 146
GS D T+ YM D
Sbjct: 216 SGSDDSTVRVWKYMGD 231
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 118/308 (38%), Gaps = 59/308 (19%)
Query: 21 MDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELK--GHSGPVWQVAWAHPQ 78
D+ LAT S+D +K+ ++ K DD TLI L H + VAW P
Sbjct: 20 FDFSQGILATGSTDRKIKLVSV----KYDDF-----TLIDVLDETAHKKAIRSVAW-RPH 69
Query: 79 FGTLLASCSYDRKVIIWRGDNGNWFKYYEYN------NHDSSVNSIAWAPKEFGLILACG 132
+LLA+ S+D V IW + + +E + H++ V +AW+ G LA
Sbjct: 70 -TSLLAAGSFDSTVSIWAKEESA-DRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATC 125
Query: 133 SSDGTISFLTYMSDTNSWESRKIAA---HTIGCNAVSWGPGIGSLSELDLKGSKLGGVAK 189
S D ++ + +D + E I+ H+ V W P
Sbjct: 126 SRDKSV--WIWETDESGEEYECISVLQEHSQDVKHVIWHPS-----------------EA 166
Query: 190 RLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC--SQDRK 247
L S D+ ++IWK D W L H V W+ + ++ + C S D
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDST 222
Query: 248 VIIWT-----SNDYVTWT--PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 300
V +W +D W + + V+NV+W G L S G + V E D
Sbjct: 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVD 280
Query: 301 GAWQCITE 308
G W+ +
Sbjct: 281 GEWKVFAK 288
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 11 GHEDMIHDAEMDYL-GLY-LATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKG-HSG 67
GHE + ++ D G++ L + S D TV+V+ + + D+ Q+ A L H
Sbjct: 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW---KYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 68 PVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNW--FKYYEYNNHDSSVNSIAWAPKEF 125
V+ VAW F L+AS D + ++ +G W F + +N + W
Sbjct: 252 QVYNVAWG---FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG 308
Query: 126 GLILACGSSDGTISF 140
ILA G DG ++F
Sbjct: 309 KTILATGGDDGIVNF 323
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 191 LVSGGCDNLIKIWKQEGDKW--IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
L +G D IK+ + D + I+ H +R VAW P ++A+ S D V
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH----TSLLAAGSFDSTV 82
Query: 249 IIWTSNDYVTWT-----PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG-A 302
IW + T I+ ++ V V+WS G L D SV +W+ + G
Sbjct: 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142
Query: 303 WQCITEMGKTSE 314
++CI+ + + S+
Sbjct: 143 YECISVLQEHSQ 154
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 6 NLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGH 65
LV H D ++ A G +A+C +D T++VF ++ G + ++K H
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFK-----------AETGEKLLDIKAH 656
Query: 66 SGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEF 125
V A++ + +A+CS D+KV IW G + Y+ H VN + K
Sbjct: 657 EDEVLCCAFSSDD--SYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSN 712
Query: 126 GLILACGSSDGTISFLTYMSDTNSWESRK-IAAHTIGCNAVSWGP 169
L+LA GS+D F + D N E R + HT N + P
Sbjct: 713 HLLLATGSND----FFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 753
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 189 KRLVSGGCDNLIKIWKQE-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 247
+R+ S G D ++++K E G+K ++ ++ H D V A++ IA+CS D+K
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSD----DSYIATCSADKK 680
Query: 248 VIIWTSNDYVTWTPFIMNTFDD 269
V IW S T +++T+D+
Sbjct: 681 VKIWDSA-----TGKLVHTYDE 697
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 6 NLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGH 65
LV H D ++ A G +A+C +D T++VF ++ G + ++K H
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFK-----------AETGEKLLDIKAH 663
Query: 66 SGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEF 125
V A++ + +A+CS D+KV IW G + Y+ H VN + K
Sbjct: 664 EDEVLCCAFSSDD--SYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFTNKSN 719
Query: 126 GLILACGSSDGTISFLTYMSDTNSWESRK-IAAHTIGCNAVSWGP 169
L+LA GS+D F + D N E R + HT N + P
Sbjct: 720 HLLLATGSND----FFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 760
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 189 KRLVSGGCDNLIKIWKQE-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 247
+R+ S G D ++++K E G+K ++ ++ H D V A++ IA+CS D+K
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSD----DSYIATCSADKK 687
Query: 248 VIIWTSNDYVTWTPFIMNTFDD 269
V IW S T +++T+D+
Sbjct: 688 VKIWDSA-----TGKLVHTYDE 704
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 20/165 (12%)
Query: 6 NLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGH 65
LV H D ++ A G +A+C +D T++VF ++ G + E+K H
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFK-----------AETGEKLLEIKAH 662
Query: 66 SGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEF 125
V A++ +A+CS D+KV IW G + Y+ H VN +
Sbjct: 663 EDEVLCCAFSTD--DRFIATCSVDKKVKIWNSMTGELV--HTYDEHSEQVNCCHFTNSSH 718
Query: 126 GLILACGSSDGTISFLTYMSDTNSWESRK-IAAHTIGCNAVSWGP 169
L+LA GSSD FL + D N E R + HT N + P
Sbjct: 719 HLLLATGSSD---CFLK-LWDLNQKECRNTMFGHTNSVNHCRFSP 759
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 189 KRLVSGGCDNLIKIWKQE-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 247
+R+ S G D ++++K E G+K +E ++ H D V A++ IA+CS D+K
Sbjct: 634 QRIASCGADKTLQVFKAETGEKLLE---IKAHEDEVLCCAFSTD----DRFIATCSVDKK 686
Query: 248 VIIWTSNDYVTWTPFIMNTFDD 269
V IW S T +++T+D+
Sbjct: 687 VKIWNS-----MTGELVHTYDE 703
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 44 RNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWR--GDNGN 101
NL +++ TL LKGH+G V Q+A PQF ++ S S D+ +I+W+ D N
Sbjct: 16 ENLYFQSMMTEQMTLRGTLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETN 74
Query: 102 W-FKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTI 160
+ H V+ + + G GS DGT+ + T +R+ HT
Sbjct: 75 YGIPQRALRGHSHFVSDVVISSD--GQFALSGSWDGTLRLWDLTTGTT---TRRFVGHTK 129
Query: 161 GCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGD-KWIEETKLENH 219
+V++ +++VSG D IK+W G K+ + E+H
Sbjct: 130 DVLSVAFSSD-----------------NRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESH 170
Query: 220 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 251
S+WV V ++P+ S +I SC D+ V +W
Sbjct: 171 SEWVSCVRFSPN--SSNPIIVSCGWDKLVKVW 200
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 42/183 (22%)
Query: 28 LATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCS 87
+ +C D VKV+NL N K +H GH+G + V P G+L AS
Sbjct: 188 IVSCGWDKLVKVWNL-ANCKLKTNH----------IGHTGYLNTVT-VSPD-GSLCASGG 234
Query: 88 YDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSS------DGTISFL 141
D + ++W + G Y + D +N++ ++P + L A G S +G I
Sbjct: 235 KDGQAMLWDLNEGK--HLYTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 291
Query: 142 TYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIK 201
+ S S+ A C +++W + L +G DNL++
Sbjct: 292 ELKQEVISTSSK---AEPPQCTSLAWSAD-----------------GQTLFAGYTDNLVR 331
Query: 202 IWK 204
+W+
Sbjct: 332 VWQ 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 31/203 (15%)
Query: 53 SQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWR--GDNGNW-FKYYEYN 109
+++ TL LKGH+G V Q+A PQF ++ S S D+ +I+W+ D N+
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGP 169
H V+ + + G GS DGT+ + T +R+ HT +V++
Sbjct: 61 GHSHFVSDVVISSD--GQFALSGSWDGTLRLWDLTTGTT---TRRFVGHTKDVLSVAFSS 115
Query: 170 GIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGD-KWIEETKLENHSDWVRDVAW 228
+++VSG D IK+W G K+ + E+HS+WV V +
Sbjct: 116 D-----------------NRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRF 156
Query: 229 APSWGLSKCMIASCSQDRKVIIW 251
+P+ S +I SC D+ V +W
Sbjct: 157 SPN--SSNPIIVSCGWDKLVKVW 177
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 42/183 (22%)
Query: 28 LATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCS 87
+ +C D VKV+NL N K +H GH+G + V P G+L AS
Sbjct: 165 IVSCGWDKLVKVWNL-ANCKLKTNHI----------GHTGYLNTVT-VSPD-GSLCASGG 211
Query: 88 YDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSS------DGTISFL 141
D + ++W + G Y + D +N++ ++P + L A G S +G I
Sbjct: 212 KDGQAMLWDLNEGK--HLYTLDGGDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVD 268
Query: 142 TYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIK 201
+ S S+ A C +++W + L +G DNL++
Sbjct: 269 ELKQEVISTSSK---AEPPQCTSLAWSAD-----------------GQTLFAGYTDNLVR 308
Query: 202 IWK 204
+W+
Sbjct: 309 VWQ 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 24 LGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLL 83
L YL + S DHT+ +++++ K+ K GH+ V VAW H +L
Sbjct: 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT----GHTAVVEDVAW-HLLHESLF 247
Query: 84 ASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAP-KEFGLILACGSSDGTISFL 141
S + D+K++IW N N K + + H + VN +++ P EF ILA GS+D T++
Sbjct: 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVAL- 304
Query: 142 TYMSDTNSWESR--KIAAHTIGCN-----AVSWGPGIGSLSELDLKGSKLGGVAKRLVSG 194
W+ R K+ H+ + V W P ++ L S
Sbjct: 305 --------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETI----------------LASS 340
Query: 195 GCDNLIKIWKQEGDKWIEETKLEN--------------HSDWVRDVAWAPSWGLSKCMIA 240
G D + +W + K EE E+ H+ + D +W P+ +I
Sbjct: 341 GTDRRLHVW--DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIIC 395
Query: 241 SCSQDRKVIIW 251
S S+D + +W
Sbjct: 396 SVSEDNIMQVW 406
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 23 YLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTL 82
Y LAT S+D TV +++L RNLK + + H ++QV W+ P T+
Sbjct: 288 YSEFILATGSADKTVALWDL-RNLK---------LKLHSFESHKDEIFQVQWS-PHNETI 336
Query: 83 LASCSYDRKVIIW------------RGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
LAS DR++ +W ++G + + H + ++ +W P E +I
Sbjct: 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII-- 394
Query: 131 CGSSDGTI 138
C S+ I
Sbjct: 395 CSVSEDNI 402
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 34/200 (17%)
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESR-------KIAAHTIGC 162
NH+ VN + P+ ++A + + Y + E ++ H
Sbjct: 126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG 184
Query: 163 NAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIW-----KQEGDKWIEETKLE 217
+SW P + L+S D+ I +W +E +
Sbjct: 185 YGLSWNPNLNGY----------------LLSASDDHTICLWDINATPKEHRVIDAKNIFT 228
Query: 218 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNVSW 276
H+ V DVAW L + + S + D+K++IW T N+ + ++ V +S+
Sbjct: 229 GHTAVVEDVAWH---LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 277 SLTGD-ILTVSCGDNSVSLW 295
+ + IL D +V+LW
Sbjct: 286 NPYSEFILATGSADKTVALW 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 24 LGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLL 83
L YL + S DHT+ +++++ K+ K GH+ V VAW H +L
Sbjct: 195 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT----GHTAVVEDVAW-HLLHESLF 249
Query: 84 ASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAP-KEFGLILACGSSDGTISFL 141
S + D+K++IW N N K + + H + VN +++ P EF ILA GS+D T++
Sbjct: 250 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVAL- 306
Query: 142 TYMSDTNSWESR--KIAAHTIGCN-----AVSWGPGIGSLSELDLKGSKLGGVAKRLVSG 194
W+ R K+ H+ + V W P ++ L S
Sbjct: 307 --------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETI----------------LASS 342
Query: 195 GCDNLIKIWKQEGDKWIEETKLEN--------------HSDWVRDVAWAPSWGLSKCMIA 240
G D + +W + K EE E+ H+ + D +W P+ +I
Sbjct: 343 GTDRRLHVW--DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIIC 397
Query: 241 SCSQDRKVIIW 251
S S+D + +W
Sbjct: 398 SVSEDNIMQVW 408
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 23 YLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTL 82
Y LAT S+D TV +++L RNLK + + H ++QV W+ P T+
Sbjct: 290 YSEFILATGSADKTVALWDL-RNLK---------LKLHSFESHKDEIFQVQWS-PHNETI 338
Query: 83 LASCSYDRKVIIW------------RGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
LAS DR++ +W ++G + + H + ++ +W P E +I
Sbjct: 339 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII-- 396
Query: 131 CGSSDGTI 138
C S+ I
Sbjct: 397 CSVSEDNI 404
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 34/200 (17%)
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESR-------KIAAHTIGC 162
NH+ VN + P+ ++A + + Y + E ++ H
Sbjct: 128 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG 186
Query: 163 NAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIW-----KQEGDKWIEETKLE 217
+SW P + L+S D+ I +W +E +
Sbjct: 187 YGLSWNPNLNGY----------------LLSASDDHTICLWDINATPKEHRVIDAKNIFT 230
Query: 218 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNVSW 276
H+ V DVAW L + + S + D+K++IW T N+ + ++ V +S+
Sbjct: 231 GHTAVVEDVAWH---LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 277 SLTGD-ILTVSCGDNSVSLW 295
+ + IL D +V+LW
Sbjct: 288 NPYSEFILATGSADKTVALW 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 24 LGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLL 83
L YL + S DHT+ +++++ K+ K GH+ V VAW H +L
Sbjct: 197 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT----GHTAVVEDVAW-HLLHESLF 251
Query: 84 ASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAP-KEFGLILACGSSDGTISFL 141
S + D+K++IW N N K + + H + VN +++ P EF ILA GS+D T++
Sbjct: 252 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF--ILATGSADKTVAL- 308
Query: 142 TYMSDTNSWESR--KIAAHTIGCN-----AVSWGPGIGSLSELDLKGSKLGGVAKRLVSG 194
W+ R K+ H+ + V W P ++ L S
Sbjct: 309 --------WDLRNLKLKLHSFESHKDEIFQVQWSPHNETI----------------LASS 344
Query: 195 GCDNLIKIWKQEGDKWIEETKLEN--------------HSDWVRDVAWAPSWGLSKCMIA 240
G D + +W + K EE E+ H+ + D +W P+ +I
Sbjct: 345 GTDRRLHVW--DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIIC 399
Query: 241 SCSQDRKVIIW 251
S S+D + +W
Sbjct: 400 SVSEDNIMQVW 410
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 23 YLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTL 82
Y LAT S+D TV +++L RNLK + + H ++QV W+ P T+
Sbjct: 292 YSEFILATGSADKTVALWDL-RNLK---------LKLHSFESHKDEIFQVQWS-PHNETI 340
Query: 83 LASCSYDRKVIIW------------RGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
LAS DR++ +W ++G + + H + ++ +W P E +I
Sbjct: 341 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII-- 398
Query: 131 CGSSDGTI 138
C S+ I
Sbjct: 399 CSVSEDNI 406
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 34/200 (17%)
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESR-------KIAAHTIGC 162
NH+ VN + P+ ++A + + Y + E ++ H
Sbjct: 130 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG 188
Query: 163 NAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIW-----KQEGDKWIEETKLE 217
+SW P + L+S D+ I +W +E +
Sbjct: 189 YGLSWNPNLNGY----------------LLSASDDHTICLWDINATPKEHRVIDAKNIFT 232
Query: 218 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNVSW 276
H+ V DVAW L + + S + D+K++IW T N+ + ++ V +S+
Sbjct: 233 GHTAVVEDVAWH---LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 277 SLTGD-ILTVSCGDNSVSLW 295
+ + IL D +V+LW
Sbjct: 290 NPYSEFILATGSADKTVALW 309
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 111/294 (37%), Gaps = 61/294 (20%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
LKGH V + W + + S S D KVI+W D+ K + + V + A+A
Sbjct: 60 LKGHGNKVLCMDWCKDK--RRIVSSSQDGKVIVW--DSFTTNKEHAVTMPCTWVMACAYA 115
Query: 122 PKEFGLILACGSSDGTISFLTYMSDTN---SWESRKIAAHTIGCNAVSW----------- 167
P G +ACG D S D N + + + +A HT +A S+
Sbjct: 116 PS--GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 168 GPGI--------GSLSE-----------LDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGD 208
G G G L + LDL S+ G VSGGCD +W
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT---FVSGGCDKKAMVWDMRSG 230
Query: 209 KWIEETKLENHSDWVRDVAWAPSWGL-------SKCMIASCSQDRKVIIW---------T 252
+ ++ E H V V + PS + C + DR+V I+ +
Sbjct: 231 QCVQ--AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 253 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDGAWQC 305
S D+ + ++D NV L G +++ G +N VS + + DG C
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 54 QKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDS 113
+ G L+ GH V + A + G S D+K ++W +G + +E H+S
Sbjct: 184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE--THES 241
Query: 114 SVNSIAWAPKEFGLILACGSSDGTISFLTYMSD 146
VNS+ + P G A GS D T +D
Sbjct: 242 DVNSVRYYPS--GDAFASGSDDATCRLYDLRAD 272
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 29/207 (14%)
Query: 45 NLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFK 104
N + S G L+GHS V VA ++ G S S+D + +W NG
Sbjct: 46 NPDRHSSECSYGLPDRRLEGHSAFVSDVALSN--NGNFAVSASWDHSLRLWNLQNGQC-- 101
Query: 105 YYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNA 164
Y++ H V S+A++P ++ G D + + SR AHT +
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIV--SGGRDNALRVWNVKGECMHTLSR--GAHTDWVSC 157
Query: 165 VSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVR 224
V + P + A +VSGG DNL+K+W + + T L+ H+++V
Sbjct: 158 VRFSPSLD---------------APVIVSGGWDNLVKVWDLATGRLV--TDLKGHTNYVT 200
Query: 225 DVAWAPSWGLSKCMIASCSQDRKVIIW 251
V +P L AS +D +W
Sbjct: 201 SVTVSPDGSL----CASSDKDGVARLW 223
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 33/198 (16%)
Query: 80 GTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTIS 139
G +LA + D V +W +G+ + + ++S+AW + G LA G+S +
Sbjct: 36 GNVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQ 92
Query: 140 FLTYMSDTNSWESRKIAAHTIGCNAVSW-------GPGIGSLSELDLK------------ 180
R + +H+ ++SW G G + D++
Sbjct: 93 LWDVQQQK---RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149
Query: 181 -----GSKLGGVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWG 233
G + + L SGG DNL+ +W + W+ H V+ VAW P W
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP-WQ 208
Query: 234 LSKCMIASCSQDRKVIIW 251
+ + DR + IW
Sbjct: 209 SNVLATGGGTSDRHIRIW 226
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 34/198 (17%)
Query: 59 IAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRG--DNGNWFKYYEYNNHDSSVN 116
+A L GHS V + WA G LAS D V +W G W + H +V
Sbjct: 143 VATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 117 SIAWAP-KEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLS 175
++AW P + L G+SD I S + AH+ C ++ W P
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVC-SILWSPHY---- 252
Query: 176 ELDLKGSKLGGVAKRLVSGG--CDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWG 233
K L+SG N + IWK + E L+ H+ V + +P
Sbjct: 253 -------------KELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSP--- 294
Query: 234 LSKCMIASCSQDRKVIIW 251
+AS + D + +W
Sbjct: 295 -DGATVASAAADETLRLW 311
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 33/198 (16%)
Query: 80 GTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTIS 139
G +LA + D V +W +G+ + + ++S+AW + G LA G+S +
Sbjct: 116 GNVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQ 172
Query: 140 FLTYMSDTNSWESRKIAAHTIGCNAVSW-------GPGIGSLSELDLK------------ 180
R + +H+ ++SW G G + D++
Sbjct: 173 LWDVQQQK---RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 229
Query: 181 -----GSKLGGVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWG 233
G + + L SGG DNL+ +W + W+ H V+ VAW P W
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP-WQ 288
Query: 234 LSKCMIASCSQDRKVIIW 251
+ + DR + IW
Sbjct: 289 SNVLATGGGTSDRHIRIW 306
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 34/198 (17%)
Query: 59 IAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRG--DNGNWFKYYEYNNHDSSVN 116
+A L GHS V + WA G LAS D V +W G W + H +V
Sbjct: 223 VATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280
Query: 117 SIAWAP-KEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLS 175
++AW P + L G+SD I S + AH+ C ++ W P
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVC-SILWSPHY---- 332
Query: 176 ELDLKGSKLGGVAKRLVSGG--CDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWG 233
K L+SG N + IWK + E L+ H+ V + +P
Sbjct: 333 -------------KELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSP--- 374
Query: 234 LSKCMIASCSQDRKVIIW 251
+AS + D + +W
Sbjct: 375 -DGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 33/198 (16%)
Query: 80 GTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTIS 139
G +LA + D V +W +G+ + + ++S+AW KE G LA G+S +
Sbjct: 127 GNVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KE-GNYLAVGTSSAEVQ 183
Query: 140 FLTYMSDTNSWESRKIAAHTIGCNAVSW-------GPGIGSLSELDLK------------ 180
R + +H+ ++SW G G + D++
Sbjct: 184 LWDVQQQK---RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 240
Query: 181 -----GSKLGGVAKRLVSGGCDNLIKIWKQEGDK--WIEETKLENHSDWVRDVAWAPSWG 233
G + + L SGG DNL+ +W + W+ H V+ VAW P W
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP-WQ 299
Query: 234 LSKCMIASCSQDRKVIIW 251
+ + DR + IW
Sbjct: 300 SNVLATGGGTSDRHIRIW 317
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 74/198 (37%), Gaps = 34/198 (17%)
Query: 59 IAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRG--DNGNWFKYYEYNNHDSSVN 116
+A L GHS V + WA G LAS D V +W G W + H +V
Sbjct: 234 VATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 291
Query: 117 SIAWAP-KEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLS 175
++AW P + L G+SD I S + AH+ C ++ W P
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVC-SILWSPHY---- 343
Query: 176 ELDLKGSKLGGVAKRLVSGG--CDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWG 233
K L+SG N + IWK + E L+ H+ V + +P
Sbjct: 344 -------------KELISGHGFAQNQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSP--- 385
Query: 234 LSKCMIASCSQDRKVIIW 251
+AS + D + +W
Sbjct: 386 -DGATVASAAADETLRLW 402
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 31/230 (13%)
Query: 27 YLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASC 86
Y+ T + D ++V+ DS ++K + +L GH G VW + +AH G +L S
Sbjct: 134 YVITGADDKMIRVY---------DSINKK--FLLQLSGHDGGVWALKYAH---GGILVSG 179
Query: 87 SYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISF-----L 141
S DR V +W G +E H+S+V + + + GS D T+
Sbjct: 180 STDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 142 TYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIK 201
+ + D + HT N G G ++ + + G +VSG DN +
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV----RTVSGHGNIVVSGSYDNTLI 293
Query: 202 IWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 251
+W K + L H+D + + +C+ S S D + IW
Sbjct: 294 VWDVAQMKCL--YILSGHTDRIYSTIYDHER--KRCI--SASMDTTIRIW 337
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 250
V+ N +++++Q+G+ W +H V V WAP I +CSQDR +
Sbjct: 26 FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP----KSNRIVTCSQDRNAYV 81
Query: 251 WTSNDYVTW-TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSL 294
+ TW ++ + V WS D V G +S+
Sbjct: 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 27 YLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASC 86
Y+ T + D ++V+ DS ++K + +L GH G VW + +AH G +L S
Sbjct: 134 YVITGADDKXIRVY---------DSINKK--FLLQLSGHDGGVWALKYAH---GGILVSG 179
Query: 87 SYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISF-----L 141
S DR V +W G +E H+S+V + + + GS D T+
Sbjct: 180 STDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 142 TYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIK 201
+ + D + HT N G G + + + G +VSG DN +
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV----RTVSGHGNIVVSGSYDNTLI 293
Query: 202 IWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 251
+W K + L H+D + + +C+ S S D + IW
Sbjct: 294 VWDVAQXKCL--YILSGHTDRIYSTIYDHER--KRCI--SASXDTTIRIW 337
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 12 HEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQ 71
H+D++ + G + D +VKV++L SQK L HS V
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL----------SQKAVL-KSYNAHSSEVNC 186
Query: 72 VAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILAC 131
VA A P T+ SC D ++++W ++ D+ S+ W P E AC
Sbjct: 187 VA-ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP-EKDDTFAC 244
Query: 132 GSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSW--GPGIGSLSE 176
G G +S L + + +S ++ + + I A S+ P + S+SE
Sbjct: 245 GDETGNVS-LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE 290
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 190 RLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 249
+ VSGG D +K+W ++ HS V VA P + SC +D +++
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLK--SYNAHSSEVNCVAACPG---KDTIFLSCGEDGRIL 207
Query: 250 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS 291
+W + T D + +V+W D T +CGD +
Sbjct: 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD-TFACGDET 248
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 159
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 160 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 214
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 255
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 311
Query: 249 IIWTSN 254
+W S+
Sbjct: 312 KLWKSD 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 101 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 149
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 150 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 204
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 205 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 245
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 246 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 301
Query: 249 IIWTSN 254
+W S+
Sbjct: 302 KLWKSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 153
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 154 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 208
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 249
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 305
Query: 249 IIWTSN 254
+W S+
Sbjct: 306 KLWKSD 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 170
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 171 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 225
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 226 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 266
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 267 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 322
Query: 249 IIWTSN 254
+W S+
Sbjct: 323 KLWKSD 328
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 177
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 178 AVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 232
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 233 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 273
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 274 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 329
Query: 249 IIWTSN 254
+W S+
Sbjct: 330 KLWKSD 335
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 159
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 160 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 214
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 255
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 311
Query: 249 IIWTSN 254
+W S+
Sbjct: 312 KLWKSD 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 110 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 158
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 159 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 213
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 254
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 255 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 310
Query: 249 IIWTSN 254
+W S+
Sbjct: 311 KLWKSD 316
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 159
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 160 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 214
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 255
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 311
Query: 249 IIWTSN 254
+W S+
Sbjct: 312 KLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 106 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 154
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 155 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 209
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 210 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 250
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 251 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 306
Query: 249 IIWTSN 254
+W S+
Sbjct: 307 KLWKSD 312
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 153
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 154 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 208
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 249
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 305
Query: 249 IIWTSN 254
+W S+
Sbjct: 306 KLWKSD 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 104 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 152
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 153 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 207
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 208 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 248
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 304
Query: 249 IIWTSN 254
+W S+
Sbjct: 305 KLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 156
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 157 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 211
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 252
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 308
Query: 249 IIWTSN 254
+W S+
Sbjct: 309 KLWKSD 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 175
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 176 AVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 230
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 271
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 327
Query: 249 IIWTSN 254
+W S+
Sbjct: 328 KLWKSD 333
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 23 YLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTL 82
Y LAT S+D TV +++L RNLK + + H ++QV W+ P T+
Sbjct: 284 YSEFILATGSADKTVALWDL-RNLK---------LKLHSFESHKDEIFQVQWS-PHNETI 332
Query: 83 LASCSYDRKVIIW------------RGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
LAS DR++ +W ++G + + H + ++ +W P E +I
Sbjct: 333 LASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI-- 390
Query: 131 CGSSDGTI 138
C S+ I
Sbjct: 391 CSVSEDNI 398
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESR-------KIAAHTIGC 162
NH+ VN + P+ I+A + + Y + + ++ H
Sbjct: 122 NHEGEVNRARYMPQN-PCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG 180
Query: 163 NAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNLIKIW-----KQEGDKWIEETKLE 217
+SW P + + L+S D+ I +W +EG +T
Sbjct: 181 YGLSWNPNL----------------SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT 224
Query: 218 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSW 276
H+ V DV+W L + + S + D+K++IW + T P ++ V +S+
Sbjct: 225 GHTAVVEDVSWH---LLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 277 SLTGD-ILTVSCGDNSVSLW 295
+ + IL D +V+LW
Sbjct: 282 NPYSEFILATGSADKTVALW 301
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 10 TGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNL-DRNLKKDDSHSQKGTLIAELKGHSGP 68
TGH+D ++ G + + S D +VK++NL + N K D GT GH
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 69 VWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
V VA Q + S S DR V+ W +GN + H +SV S+A A
Sbjct: 313 VLSVATT--QNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVA 361
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 25/173 (14%)
Query: 80 GTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTIS 139
G LA+ + DR + IW +N + H+ + S+ + P G L GS D T+
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYFPS--GDKLVSGSGDRTVR 190
Query: 140 FLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSGGCDNL 199
D + + + G V+ PG G K + +G D
Sbjct: 191 IW----DLRTGQCSLTLSIEDGVTTVAVSPGDG----------------KYIAAGSLDRA 230
Query: 200 IKIWKQEGDKWIEETKLENHS-DWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 251
+++W E +E EN S +D ++ + + S S DR V +W
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 104/258 (40%), Gaps = 38/258 (14%)
Query: 4 QLNLVDTGHEDMIHDAEMDYL--GLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAE 61
++ ++ GHE I+ +DY G L + S D TV++++L + G
Sbjct: 156 KIVMILQGHEQDIY--SLDYFPSGDKLVSGSGDRTVRIWDL-----------RTGQCSLT 202
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNN-----HDSSVN 116
L G V VA + P G +A+ S DR V +W + G + + N H SV
Sbjct: 203 LSIEDG-VTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 117 SIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSE 176
S+ + G + GS D ++ + N +S+ + T C G LS
Sbjct: 261 SVVFT--RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT--CEVTYIGHKDFVLSV 316
Query: 177 LDLKGSKLGGVAKRLVSGGCDNLIKIW-KQEGDKWIEETKLENHSDWVRDVAWA--PSWG 233
+ + ++SG D + W K+ G+ + L+ H + V VA A S G
Sbjct: 317 ATTQNDEY------ILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSSLG 367
Query: 234 LSKCMIASCSQDRKVIIW 251
+ A+ S D K IW
Sbjct: 368 PEYNVFATGSGDCKARIW 385
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 222 WVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNVSWSLTG 280
++R V ++P +A+ ++DR + IW N + I+ + ++++ + +G
Sbjct: 125 YIRSVCFSPDGKF----LATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSG 177
Query: 281 DILTVSCGDNSVSLWKENT 299
D L GD +V +W T
Sbjct: 178 DKLVSGSGDRTVRIWDLRT 196
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGMCLKTLPAHSDPVS 156
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 157 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 211
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 252
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DN++ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 308
Query: 249 IIWTSN 254
+W S+
Sbjct: 309 KLWKSD 314
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 23 YLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTL 82
Y LAT S+D TV +++L RNLK + + H ++QV W+ P T+
Sbjct: 286 YSEFILATGSADKTVALWDL-RNLK---------LKLHTFESHKDEIFQVHWS-PHNETI 334
Query: 83 LASCSYDRKVIIW------------RGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
LAS DR++ +W ++G + + H + ++ +W P E +I
Sbjct: 335 LASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI-- 392
Query: 131 CGSSDGTI 138
C S+ I
Sbjct: 393 CSVSEDNI 400
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 36/201 (17%)
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGP 169
NH+ VN + P+ +I S + F S + CN
Sbjct: 124 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGE-------CNP----- 171
Query: 170 GIGSLSELDLKGSKLGG--------VAKRLVSGGCDNLIKIW-----KQEGDKWIEETKL 216
+L L+G + G ++ L+S D+ + +W +EG +
Sbjct: 172 ------DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIF 225
Query: 217 ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVS 275
HS V DVAW L + + S + D+K++IW + T P +++ V +S
Sbjct: 226 TGHSAVVEDVAWH---LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 276 WSLTGD-ILTVSCGDNSVSLW 295
++ + IL D +V+LW
Sbjct: 283 FNPYSEFILATGSADKTVALW 303
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCM------IASC 242
++++S G + IK+W G+ + ENHSDWV V ++P + + AS
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 243 SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
D ++ +W +N + +T + V ++S S G + D + +W
Sbjct: 191 GWDGRLKVWNTNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 191 LVSGGCDNLIKIWK-----QEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 245
L+SG D + IWK Q G I L H+ +V D+A + C S S D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ----ENCFAISSSWD 97
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ + +W T+ F+ + + V++V++S + + + + LW
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSE--VYSVAFSPDNRQILSAGAEREIKLW 145
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 68 PVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGL 127
P+ + A F AS +D ++ +W N N+ Y + H+S+VN ++ +P G
Sbjct: 172 PIMKSANKVQPFAPYFASVGWDGRLKVW---NTNFQIRYTFKAHESNVNHLSISPN--GK 226
Query: 128 ILACGSSD 135
+A G D
Sbjct: 227 YIATGGKD 234
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 23 YLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTL 82
Y LAT S+D TV +++L RNLK + + H ++QV W+ P T+
Sbjct: 286 YSEFILATGSADKTVALWDL-RNLK---------LKLHTFESHKDEIFQVHWS-PHNETI 334
Query: 83 LASCSYDRKVIIW------------RGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
LAS DR++ +W ++G + + H + ++ +W P E +I
Sbjct: 335 LASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI-- 392
Query: 131 CGSSDGTI 138
C S+ I
Sbjct: 393 CSVSEDNI 400
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 36/201 (17%)
Query: 110 NHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGP 169
NH+ VN + P+ +I S + F S + CN
Sbjct: 124 NHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGE-------CNP----- 171
Query: 170 GIGSLSELDLKGSKLGG--------VAKRLVSGGCDNLIKIW-----KQEGDKWIEETKL 216
+L L+G + G ++ L+S D+ + +W +EG +
Sbjct: 172 ------DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIF 225
Query: 217 ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVS 275
HS V DVAW L + + S + D+K+ IW + T P +++ V +S
Sbjct: 226 TGHSAVVEDVAWH---LLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 276 WSLTGD-ILTVSCGDNSVSLW 295
++ + IL D +V+LW
Sbjct: 283 FNPYSEFILATGSADKTVALW 303
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 28 LATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCS 87
+A C ++H V ++ N K + ELK H+G V V WA P ++ +C
Sbjct: 23 IAICPNNHEVHIYEKSGN---------KWVQVHELKEHNGQVTGVDWA-PDSNRIV-TCG 71
Query: 88 YDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDT 147
DR +W W + + + WAP E A GS IS + Y
Sbjct: 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK--FAVGSGSRVIS-ICYFEQE 128
Query: 148 NSW 150
N W
Sbjct: 129 NDW 131
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 81 TLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGS 133
T +A C + +V I+ W + +E H+ V + WAP + I+ CG+
Sbjct: 21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGT 72
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 173 SLSELDLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSW 232
+++ +D K S+ R++SG DN + I+ EG + ++ H+ +V V + P
Sbjct: 149 AMNSVDFKPSR----PFRIISGSDDNTVAIF--EGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 233 GLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDV-----VWNVSWSLTGDILTVSC 287
L AS D ++++ D F ++ +V V+ ++WS G + +
Sbjct: 203 SL----FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258
Query: 288 GDNSVSLWKENTDGAWQCITEMGKTSEQR 316
D ++ +W T + I + +Q+
Sbjct: 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 189 KRLVS-GGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 247
K+ V+ GG D+ + ++K G + E K H + VA++ + + + Q RK
Sbjct: 460 KQFVAVGGQDSKVHVYKLSGAS-VSEVKTIVHPAEITSVAFSNN----GAFLVATDQSRK 514
Query: 248 VIIWT-SNDYV-----TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 298
VI ++ +N++ +WT V VSWS L DNSV +W N
Sbjct: 515 VIPYSVANNFELAHTNSWTFHTAK-----VACVSWSPDNVRLATGSLDNSVIVWNMN 566
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 28 LATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQVAWAHPQFGTLLASCS 87
+A C ++H V ++ N K + ELK H+G V + WA P ++ +C
Sbjct: 23 IAICPNNHEVHIYEKSGN---------KWVQVHELKEHNGQVTGIDWA-PDSNRIV-TCG 71
Query: 88 YDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGSSDGTISFLTYMSDT 147
DR +W W + + + WAP E A GS IS + Y
Sbjct: 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK--FAVGSGSRVIS-ICYFEQE 128
Query: 148 NSW 150
N W
Sbjct: 129 NDW 131
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 81 TLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILACGS 133
T +A C + +V I+ W + +E H+ V I WAP + I+ CG+
Sbjct: 21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAP-DSNRIVTCGT 72
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 109/283 (38%), Gaps = 52/283 (18%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
L+GH ++ + W LL S S D K+IIW D+ K + S V + A+A
Sbjct: 62 LRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYA 117
Query: 122 PKEFGLILACGSSDGTISFLTYMS-DTNSWESRKIAAHT--IGC------NAVSWGPGIG 172
P G +ACG D S + + N SR++A HT + C N + G
Sbjct: 118 PS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 175
Query: 173 SLSELDLKGS----------------KLGGVAKRLVSGGCDNLIKIWK-QEGDKWIEETK 215
+ + D++ L + VSG CD K+W +EG +
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQT 232
Query: 216 LENHSDWVRDVAWAPSWGL-------SKCMIASCSQDRKVIIWTSNDY---VTWTPF--- 262
H + + + P+ + C + D++++ ++ ++ +T F
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 292
Query: 263 ---IMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDG 301
++ +DD NV +L D V G DN VS DG
Sbjct: 293 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 156
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 157 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 211
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 252
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 308
Query: 249 IIWTSN 254
++ S+
Sbjct: 309 KLYKSD 314
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 5 LNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKG 64
L GH + + G +LA+ S+D +K++ + G + G
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----------AYDGKFEKTISG 66
Query: 65 HSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFK 104
H + VAW+ LL S S D+ + IW +G K
Sbjct: 67 HKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLK 104
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 109/283 (38%), Gaps = 52/283 (18%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
L+GH ++ + W LL S S D K+IIW D+ K + S V + A+A
Sbjct: 51 LRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 122 PKEFGLILACGSSDGTISFLTYMS-DTNSWESRKIAAHT--IGC------NAVSWGPGIG 172
P G +ACG D S + + N SR++A HT + C N + G
Sbjct: 107 PS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 173 SLSELDLKGS----------------KLGGVAKRLVSGGCDNLIKIWK-QEGDKWIEETK 215
+ + D++ L + VSG CD K+W +EG +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQT 221
Query: 216 LENHSDWVRDVAWAPSWGL-------SKCMIASCSQDRKVIIWTSNDY---VTWTPF--- 262
H + + + P+ + C + D++++ ++ ++ +T F
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 263 ---IMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDG 301
++ +DD NV +L D V G DN VS DG
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 109/283 (38%), Gaps = 52/283 (18%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
L+GH ++ + W LL S S D K+IIW D+ K + S V + A+A
Sbjct: 51 LRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 122 PKEFGLILACGSSDGTISFLTYMS-DTNSWESRKIAAHT--IGC------NAVSWGPGIG 172
P G +ACG D S + + N SR++A HT + C N + G
Sbjct: 107 PS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 173 SLSELDLKGS----------------KLGGVAKRLVSGGCDNLIKIWK-QEGDKWIEETK 215
+ + D++ L + VSG CD K+W +EG +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQT 221
Query: 216 LENHSDWVRDVAWAPSWGL-------SKCMIASCSQDRKVIIWTSNDY---VTWTPF--- 262
H + + + P+ + C + D++++ ++ ++ +T F
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 263 ---IMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDG 301
++ +DD NV +L D V G DN VS DG
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPAHSDPVS 156
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 157 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 211
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D T+ Y ++ K + I N S GG
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 252
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DNL+ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 308
Query: 249 IIWTSN 254
++ S+
Sbjct: 309 KLFKSD 314
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 5 LNLVDTGHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKG 64
L GH + + G +LA+ S+D +K++ + G + G
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-----------AYDGKFEKTISG 66
Query: 65 HSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFK 104
H + VAW+ LL S S D+ + IW +G K
Sbjct: 67 HKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLK 104
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 109/283 (38%), Gaps = 52/283 (18%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
L+GH ++ + W LL S S D K+IIW D+ K + S V + A+A
Sbjct: 51 LRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 122 PKEFGLILACGSSDGTISFLTYMS-DTNSWESRKIAAHT--IGC------NAVSWGPGIG 172
P G +ACG D S + + N SR++A HT + C N + G
Sbjct: 107 PS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 173 SLSELDLKGS----------------KLGGVAKRLVSGGCDNLIKIWK-QEGDKWIEETK 215
+ + D++ L + VSG CD K+W +EG +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQT 221
Query: 216 LENHSDWVRDVAWAPSWGL-------SKCMIASCSQDRKVIIWTSNDY---VTWTPF--- 262
H + + + P+ + C + D++++ ++ ++ +T F
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 263 ---IMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDG 301
++ +DD NV +L D V G DN VS DG
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 109/283 (38%), Gaps = 52/283 (18%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
L+GH ++ + W LL S S D K+IIW D+ K + S V + A+A
Sbjct: 51 LRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 122 PKEFGLILACGSSDGTISFLTYMS-DTNSWESRKIAAHT--IGC------NAVSWGPGIG 172
P G +ACG D S + + N SR++A HT + C N + G
Sbjct: 107 PS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 173 SLSELDLKGS----------------KLGGVAKRLVSGGCDNLIKIWK-QEGDKWIEETK 215
+ + D++ L + VSG CD K+W +EG +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQT 221
Query: 216 LENHSDWVRDVAWAPSWGL-------SKCMIASCSQDRKVIIWTSNDY---VTWTPF--- 262
H + + + P+ + C + D++++ ++ ++ +T F
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 263 ---IMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDG 301
++ +DD NV +L D V G DN VS DG
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 41/246 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH + + + + + S D +V+++++ + G + L HS PV
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGMCLKTLPAHSDPVS 156
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
V + G+L+ S SYD IW +G K ++ + V+ + ++P G +
Sbjct: 157 AVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN--GKYIL 211
Query: 131 CGSSDGTISFLTYMSDT--NSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVA 188
+ D + Y ++ K + I N S GG
Sbjct: 212 AATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF-----------------SVTGG-- 252
Query: 189 KRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 248
K +VSG DN++ IW + + ++ KL+ H+D V A P+ + A+ D+ +
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQ--KLQGHTDVVISTACHPTENI--IASAALENDKTI 308
Query: 249 IIWTSN 254
+W S+
Sbjct: 309 KLWKSD 314
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 216 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW---TSNDYVTWTPFIMNTFDDVVW 272
LE H+ V VAW P+ ++ ++ S D +++W T +T P + D ++
Sbjct: 127 LEGHTKRVGIVAWHPT---AQNVLLSAGXDNVILVWDVGTGAAVLTLGP---DVHPDTIY 180
Query: 273 NVSWSLTGDILTVSCGDNSVSL 294
+V WS G ++ SC D V +
Sbjct: 181 SVDWSRDGALICTSCRDKRVRV 202
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 59 IAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWR-GDNGNWFKYYE----YNNHDS 113
+ + GH+ PV +AW P ++AS S D V++W D G E H
Sbjct: 74 VPLVXGHTAPVLDIAWX-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 114 SVNSIAWAPKEFGLILACG 132
V +AW P ++L+ G
Sbjct: 133 RVGIVAWHPTAQNVLLSAG 151
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 59 IAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSI 118
I L+GHS V +AW G LAS D V IW D + + NH+++V ++
Sbjct: 210 IGTLQGHSSEVCGLAWR--SDGLQLASGGNDNVVQIW--DARSSIPKFTKTNHNAAVKAV 265
Query: 119 AWAPKEFGLILACGSS-DGTISF 140
AW P + L+ G + D I F
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHF 288
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 43/223 (19%)
Query: 12 HEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVWQ 71
H+D++ + G + S D +KV++L + + +++ + H+ V
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-----------VLSSYRAHAAQVTC 174
Query: 72 VAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILAC 131
VA A P ++ SCS D ++++W + S+AW P++ +
Sbjct: 175 VA-ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ-SEVFVF 232
Query: 132 GSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPG----IGSLSELDLKGSKLGGV 187
G +GT+S + S + S A H+ + + P + SLSE D + L
Sbjct: 233 GDENGTVSLVDTKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSE-DCSLAVLDS- 287
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAP 230
+L ++++ + H D+VRD W+P
Sbjct: 288 ----------SLSELFRSQA-----------HRDFVRDATWSP 309
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETK-----LENHSDWVRDVAWAPSWGLSKCMIASCSQD 245
+ SG D + +W+ + + LE H+ V VAW P+ ++ ++ S D
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT---AQNVLLSAGCD 153
Query: 246 RKVIIW---TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSL 294
+++W T +T P + D +++V WS G ++ SC D V +
Sbjct: 154 NVILVWDVGTGAAVLTLGP---DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 64 GHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWF-----KYYEYNNHDSSVNSI 118
GH+ PV +AW P ++AS S D V++W +G H V +
Sbjct: 79 GHTAPVLDIAWC-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 119 AWAPKEFGLILACG 132
AW P ++L+ G
Sbjct: 138 AWHPTAQNVLLSAG 151
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 69/194 (35%), Gaps = 26/194 (13%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWA 121
L+GHSG V+ + W + + S S D ++I+W K + H V A+A
Sbjct: 62 LQGHSGKVYSLDWTPEK--NWIVSASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFA 117
Query: 122 PKEFGLILACGSSDGTISFLTYMS----DTNSWESRKIAAHTIGCNAVSWGPGIGSLSEL 177
P G +ACG D S S D N SR + H ++ + P
Sbjct: 118 PN--GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP-------- 167
Query: 178 DLKGSKLGGVAKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 237
RL++G D +W + I E S DV L+
Sbjct: 168 --------DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 238 MIASCSQDRKVIIW 251
M S S D V +W
Sbjct: 220 MFISGSCDTTVRLW 233
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 30/235 (12%)
Query: 87 SYDRKVIIWRGDNGNWFKY------------YEYNNHDSSVNSIAWAPKEFGLILACGSS 134
S++ K+I DNG+ Y ++NH SSV ++ + K+ +LA G +
Sbjct: 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGN 134
Query: 135 DGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKRLVSG 194
+G I F+ W+ K ++ G + S+ E+ + + +A S
Sbjct: 135 NGEI-FI--------WDMNKCTESPSNYTPLTPGQSMSSVDEV-ISLAWNQSLAHVFASA 184
Query: 195 GCDNLIKIWKQEGDKWIEETKLENHSDWVRD----VAWAPSWGLSKCMIASCSQDRKVII 250
G N IW + K + + + ++ V W P D ++I
Sbjct: 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244
Query: 251 WTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDGAWQ 304
W + T + + ++ W + L +S G DN+V LW N + A Q
Sbjct: 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW--NPESAEQ 297
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 46/213 (21%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+D + + + G + + S D+T+KV++ + G + L GH+G VW
Sbjct: 116 GHDDHVITC-LQFCGNRIVSGSDDNTLKVWS-----------AVTGKCLRTLVGHTGGVW 163
Query: 71 QVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVNSIAWAPKEFGLILA 130
+ ++ S S DR + +W + G + H S+V + K +
Sbjct: 164 ----SSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTVRCMHLHEKR----VV 213
Query: 131 CGSSDGTISFLTYMSDTNSWESRKIAAHTIGCNAVSWGPGIGSLSELDLKGSKLGGVAKR 190
GS D T+ W+ T C V G + ++ + G +R
Sbjct: 214 SGSRDATLRV---------WD-----IETGQCLHVLMGH-VAAVRCVQYDG-------RR 251
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWV 223
+VSG D ++K+W E + + L+ H++ V
Sbjct: 252 VVSGAYDFMVKVWDPETETCLH--TLQGHTNRV 282
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGL--SKCMIASCSQD 245
A ++SG D IK+W +G L H+DWV V P+ I S D
Sbjct: 119 ASXIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ V W N + FI + + + ++ S G ++ + D + LW
Sbjct: 176 KXVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIXLW 223
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 22/135 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+ + ++D + + S D T+KV+ + KG +A L GH+ V
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTI------------KGQCLATLLGHNDWVS 152
Query: 71 QVAWAHPQFG----TLLASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAPKEF 125
QV + + S D+ V W N N F+ ++ H+S++N++ +P
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKXVKAW---NLNQFQIEADFIGHNSNINTLTASPD-- 207
Query: 126 GLILACGSSDGTISF 140
G ++A DG I
Sbjct: 208 GTLIASAGKDGEIXL 222
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGL--SKCMIASCSQD 245
A ++SG D IK+W +G L H+DWV V P+ I S D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ V W N + FI + + + ++ S G ++ + D + LW
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLW 223
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+ + ++D + + S D T+KV+ + KG +A L GH+ V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI------------KGQCLATLLGHNDWVS 152
Query: 71 QVAWAHPQFG----TLLASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAPKEF 125
QV + + S D+ V W N N F+ ++ H+S++N++ +P
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD-- 207
Query: 126 GLILACGSSDGTI 138
G ++A DG I
Sbjct: 208 GTLIASAGKDGEI 220
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGL--SKCMIASCSQD 245
A ++SG D IK+W +G L H+DWV V P+ I S D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ V W N + FI + + + ++ S G ++ + D + LW
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLW 223
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+ + ++D + + S D T+KV+ + KG +A L GH+ V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI------------KGQCLATLLGHNDWVS 152
Query: 71 QVAWAHPQFG----TLLASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAPKEF 125
QV + + S D+ V W N N F+ ++ H+S++N++ +P
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD-- 207
Query: 126 GLILACGSSDGTI 138
G ++A DG I
Sbjct: 208 GTLIASAGKDGEI 220
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGL--SKCMIASCSQD 245
A ++SG D IK+W +G L H+DWV V P+ I S D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ V W N + FI + + + ++ S G ++ + D + LW
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLW 223
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+ + ++D + + S D T+KV+ + KG +A L GH+ V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI------------KGQCLATLLGHNDWVS 152
Query: 71 QVAWAHPQFG----TLLASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAPKEF 125
QV + + S D+ V W N N F+ ++ H+S++N++ +P
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD-- 207
Query: 126 GLILACGSSDGTI 138
G ++A DG I
Sbjct: 208 GTLIASAGKDGEI 220
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGL--SKCMIASCSQD 245
A ++SG D IK+W +G L H+DWV V P+ I S D
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ V W N + FI + + + ++ S G ++ + D + LW
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLW 223
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+ + ++D + + S D T+KV+ + KG +A L GH+ V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI------------KGQCLATLLGHNDWVS 152
Query: 71 QVAWAHPQFG----TLLASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAPKEF 125
QV + + S D+ V W N N F+ ++ H+S++N++ +P
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD-- 207
Query: 126 GLILACGSSDGTI 138
G ++A DG I
Sbjct: 208 GTLIASAGKDGEI 220
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 189 KRLVSGGCDNLIKIWKQEGD-KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 247
+++VS D IK+W G+ K+ E H DWV V ++P+ + I S S D+
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN--TLQPTIVSASWDKT 542
Query: 248 VIIW 251
V +W
Sbjct: 543 VKVW 546
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 188 AKRLVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGL--SKCMIASCSQD 245
A ++SG D IK+W +G L H+DWV V P+ I S D
Sbjct: 113 ASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 246 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 295
+ V W N + FI + + + ++ S G ++ + D + LW
Sbjct: 170 KMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLW 217
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLDRNLKKDDSHSQKGTLIAELKGHSGPVW 70
GH+ + ++D + + S D T+KV+ + KG +A L GH+ V
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI------------KGQCLATLLGHNDWVS 146
Query: 71 QVAWAHPQFG----TLLASCSYDRKVIIWRGDNGNWFKY-YEYNNHDSSVNSIAWAPKEF 125
QV + + S D+ V W N N F+ ++ H+S++N++ +P
Sbjct: 147 QVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD-- 201
Query: 126 GLILACGSSDGTI 138
G ++A DG I
Sbjct: 202 GTLIASAGKDGEI 214
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 250
++SG D +K+W E + W E E H +V VA+ P AS DR V +
Sbjct: 112 VLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTVKV 167
Query: 251 WT 252
W+
Sbjct: 168 WS 169
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 250
++SG D +K+W E + W E E H +V VA+ P AS DR V +
Sbjct: 112 VLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTVKV 167
Query: 251 WT 252
W+
Sbjct: 168 WS 169
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 62 LKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIW--RGDNGNWFKYYEYNNHDSSVNSIA 119
L+GH + V+W+ P++ +LA+ S D +V +W R +G ++N S A
Sbjct: 182 LQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 120 WAPKEFGLILACGSSDGTISFLTYMSD 146
+ C +SDG + LT +D
Sbjct: 241 NTAHNGKVNGLCFTSDG-LHLLTVGTD 266
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 57 TLIAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVN 116
T +L GH GP+ + + LL S S D + IW G NGN + H S+
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGNSQNCFY--GHSQSIV 293
Query: 117 SIAWAPKEFGLILACGSSDGTISF 140
S +W + +++C S DG++
Sbjct: 294 SASWVGDD--KVISC-SMDGSVRL 314
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 250
++SG D +K+W E + W E E H +V VA+ P AS DR V +
Sbjct: 112 VLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTVKV 167
Query: 251 WT 252
W+
Sbjct: 168 WS 169
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 191 LVSGGCDNLIKIWKQEGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 250
++SG D +K+W E + W E E H +V VA+ P AS DR V +
Sbjct: 112 VLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTVKV 167
Query: 251 WT 252
W+
Sbjct: 168 WS 169
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 61 ELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNG 100
+L GH P+ QV + + G LL SCS D +W NG
Sbjct: 27 KLTGHERPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNG 64
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLD 43
GH D + A+ D LG + +C DH++K++ ++
Sbjct: 195 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLD 43
GH D + A+ D LG + +C DH++K++ ++
Sbjct: 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLD 43
GH D + A+ D LG + +C DH++K++ ++
Sbjct: 154 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLD 43
GH D + A+ D LG + +C DH++K++ ++
Sbjct: 158 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 GHEDMIHDAEMDYLGLYLATCSSDHTVKVFNLD 43
GH D + A+ D LG + +C DH++K++ ++
Sbjct: 158 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 57 TLIAELKGHSGPVWQVAWAHPQFGTLLASCSYDRKVIIWRGDNGNWFKYYEYNNHDSSVN 116
T+ + H+GPV V W+ ASC D+ +W + + + HD+ V
Sbjct: 77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASC--DKTAKMWDLSSNQAIQIAQ---HDAPVK 131
Query: 117 SIAWAPKEFGLILACGSSDGTISF 140
+I W + GS D T+ F
Sbjct: 132 TIHWIKAPNYSCVMTGSWDKTLKF 155
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 28/101 (27%)
Query: 28 LATCSSDHTVKVFNLDRNLKK---------------DDSH----SQKGTLIAELKGHSGP 68
T S+D T+K++ D+ +K DD H S G LI + H+G
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG-LIKLVDXHTGD 216
Query: 69 VWQVAWAHPQFGTLL--------ASCSYDRKVIIWRGDNGN 101
V + H F + SC DR V IW +NG+
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,100,567
Number of Sequences: 62578
Number of extensions: 479999
Number of successful extensions: 1737
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 300
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)