BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2764
(419 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/387 (58%), Positives = 285/387 (73%), Gaps = 9/387 (2%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND ERG VWEEVLI+LP V I++LS
Sbjct: 395 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLS 454
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 455 ATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFH 514
Query: 277 TRGYLAAKEVKCRKQLEKGGSGGGK----LNGPFTRGAEKNLFISFLNYLRKSQNLPVVL 332
T+GY AA E K + + + G K GP ++ +++S L LR LPVV+
Sbjct: 515 TKGYYAAVEAKKERMSKHAQTFGAKQPTHQGGP---AQDRGVYLSLLASLRTRAQLPVVV 571
Query: 333 FTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392
FT SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ DR LPQV + +LL
Sbjct: 572 FTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRG-SDRQLPQVLHMSELLNR 630
Query: 393 GIGVHHSGILPILKEIVEMLFQKGLVK 419
G+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 631 GLGVHHSGILPILKEIVEMLFSRGLVK 657
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/437 (48%), Positives = 285/437 (65%), Gaps = 31/437 (7%)
Query: 8 HSLGRVLRGQNSGSNRREVDIPILKISNTLPKHV----TQTEWAEMLDVSKPVLDFDAKV 63
H L L+ NS + + +P + +LP Q ++A ++D S P+ +F V
Sbjct: 211 HELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLHKQPDYAHVVDSSAPIENFQQLV 270
Query: 64 PIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123
P MA +PFELD FQK+AI LE + VFV AHTSAGKTV+AEYAIAL+Q H T+ IYTS
Sbjct: 271 PEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTS 330
Query: 124 PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183
PIKALSNQK+RDF+ F+DVG++TGD Q+N SCL+MTTEILRSMLYRG+D++RD+E+V
Sbjct: 331 PIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFV 390
Query: 184 IFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVST 243
IFDEVHY+ND ERG VWEEV+I+LP V +++LSATVPNT EFA WVG TKK +YV+ST
Sbjct: 391 IFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVIST 450
Query: 244 LKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQ---LEKGGSGGG 300
LKRPVPL+H+L+V K +F I + G FL GY +A + + + K
Sbjct: 451 LKRPVPLEHYLWV-----KQNMFKIVDQHGRFLMDGYKSANDALKKPDKPVIAKDNKNSA 505
Query: 301 -----------KLNGPFTRGAEK-------NLFISFLNYLRKSQNLPVVLFTLSRKRCDQ 342
+ N RG+ K N ++ + +L K LPV++F S+KRC++
Sbjct: 506 RGRGAARGRGVQTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCEE 565
Query: 343 NAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL 402
L + D + EKS++H + ++ L+ E DR LPQ+ R+ ++L G+ VHH G+L
Sbjct: 566 YVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKE-DRLLPQIGRMREMLSRGLAVHHGGLL 624
Query: 403 PILKEIVEMLFQKGLVK 419
PI+KEIVE+LFQ+GLVK
Sbjct: 625 PIIKEIVEILFQRGLVK 641
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/430 (47%), Positives = 277/430 (64%), Gaps = 47/430 (10%)
Query: 33 ISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVF 92
+S ++P + EWA ++D++ + +FD +P A +WPFELD FQK+A+ LE+ + VF
Sbjct: 292 VSKSVP---VKKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVF 348
Query: 93 VTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV--GLVTGDF 150
V AHTSAGKTV+AEYAIA++ + T+TIYTSPIKALSNQK+RDF+ETF DV GL+TGD
Sbjct: 349 VAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDV 408
Query: 151 QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKE 210
QIN A+CL+MTTEILRSMLYRG+D++RD+E+VIFDEVHY+ND +RG VWEEV+I+LP+
Sbjct: 409 QINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 468
Query: 211 VCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG----PVLEKNQLF 266
V ++LSATVPNT EFA+W+G TK+ +YV+ST KRPVPL+ ++ PV+ +N F
Sbjct: 469 VKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 528
Query: 267 L-------------------------------IREAEGEFLTRGYLAAKEVKCRKQLEKG 295
L R G TR + R +G
Sbjct: 529 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRG 588
Query: 296 GSGGGKLNGPFTR------GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS 349
GS G G R G K + +NYLRK + LP+V+F S+KRC++ A L
Sbjct: 589 GSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEG 648
Query: 350 MDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIV 409
++F EKS+IH F + SI L+ E DR LPQ+ + LL+ GI VHH G+LPI+KE++
Sbjct: 649 INFCNNKEKSQIHMFIEKSITRLKKE-DRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 707
Query: 410 EMLFQKGLVK 419
E+LF KG +K
Sbjct: 708 EILFSKGFIK 717
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 190/433 (43%), Positives = 262/433 (60%), Gaps = 44/433 (10%)
Query: 18 NSGSNRREVDI-----PI--------------LKISNTLPK-HVTQTEWAE------MLD 51
N+G N+R+VD PI L +++ +P+ V E E L
Sbjct: 58 NNGKNKRDVDFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALP 117
Query: 52 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL 111
+ L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAIAL
Sbjct: 118 AEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIAL 177
Query: 112 SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLY 171
+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSMLY
Sbjct: 178 ALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLY 237
Query: 172 RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVG 231
RGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W+
Sbjct: 238 RGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 297
Query: 232 NTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV----- 286
+ K +V+ T RP PL+H+++ + L L+ + G+F + A +V
Sbjct: 298 HLHKQPCHVIYTDYRPTPLQHYIFPAG---GDGLHLVVDENGDFREDNFNTAMQVLRDAG 354
Query: 287 KCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346
K +KG GG K GP N+F + + + PV++F+ S+K C+ A
Sbjct: 355 DLAKGDQKGRKGGTK--GP------SNVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQ 405
Query: 347 LLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILK 406
+ +DF+T EK + F ++I L +E D+ LPQV+ + LLK GIG+HH G+LPILK
Sbjct: 406 MTKLDFNTDEEKKMVEEVFSNAIDCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILK 464
Query: 407 EIVEMLFQKGLVK 419
E +E+LF +GL+K
Sbjct: 465 ETIEILFSEGLIK 477
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/433 (43%), Positives = 262/433 (60%), Gaps = 44/433 (10%)
Query: 18 NSGSNRREVDI-----PI--------------LKISNTLPK-HVTQTEWAE------MLD 51
+ G N+R++D+ PI L +++ +P+ V E E L
Sbjct: 56 SGGKNKRDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALP 115
Query: 52 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL 111
+ + +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAIAL
Sbjct: 116 ADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIAL 175
Query: 112 SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLY 171
+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSMLY
Sbjct: 176 ALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLY 235
Query: 172 RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVG 231
RGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W+
Sbjct: 236 RGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIC 295
Query: 232 NTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV----- 286
+ K +V+ T RP PL+H+++ + L L+ + G+F + A +V
Sbjct: 296 HLHKQPCHVIYTDYRPTPLQHYIFPAG---GDGLHLVVDENGDFREDNFNTAMQVLRDAG 352
Query: 287 KCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346
K +KG GG K GP N+F + + + PV++F+ S+K C+ A
Sbjct: 353 DLAKGDQKGRKGGTK--GP------SNVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQ 403
Query: 347 LLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILK 406
+ +DF+T EK + F ++I L +E D+ LPQV+ + LLK GIG+HH G+LPILK
Sbjct: 404 MTKLDFNTDEEKKMVEEVFNNAIDCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILK 462
Query: 407 EIVEMLFQKGLVK 419
E +E+LF +GL+K
Sbjct: 463 ETIEILFSEGLIK 475
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 228/359 (63%), Gaps = 10/359 (2%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A T+PF LD FQ AI ++ V V+AHTSAGKTV+AEYAIA S +K R IYTSPIK
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQKYR+ F DVGL+TGD IN A CLVMTTEILRSMLYRGS+V+R++ +VIFD
Sbjct: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 262
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
EVHY+ D ERG VWEE +ILLP +V V LSAT+PN +EFA+W+ ++V T R
Sbjct: 263 EVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR 322
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRK------QLEKGGSGGG 300
P PL+H+L+ + ++L+ + + F + A + + G G
Sbjct: 323 PTPLQHYLFPA---HGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQ 379
Query: 301 KLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK 360
G +G K + + K + PV++F+ S++ C++ A + +DF++ EK
Sbjct: 380 TYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 439
Query: 361 IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ + F ++I L E DR LPQ+K + LL+ GIG+HHSG+LPILKE++E+LFQ+G +K
Sbjct: 440 LTKIFNNAIA-LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 497
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 318 bits (814), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 228/355 (64%), Gaps = 11/355 (3%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A +PF+LD FQKQAI+ ++ + V V+AHTSAGKTV+A YAIA K R IYTSPIK
Sbjct: 119 AKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIK 178
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQKYR+ E F+DVGL+TGD +N ASCLVMTTEILRSMLYRGS++++++ +V++D
Sbjct: 179 ALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYD 238
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
E+HY+ D ERG VWEE +IL+ K + LSAT+PN +FA WV + K+ V VV T R
Sbjct: 239 EIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYR 298
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306
P PL+H++Y PV + ++ + +GEF + A L G G N
Sbjct: 299 PTPLQHWIY--PVGGEG-MYEVVNVKGEFREDKFRDA-----MSGLATAGDSAGSFNKRR 350
Query: 307 TRGAEK--NLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
T G + + + + + + L ++F+ SRK C+ A +L MDF+ EK +
Sbjct: 351 TGGGTQGDSNVLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSV 410
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ +I L ED + LPQ+ + LL+ GIGVHHSG++PILKE +E+LF +GLVK
Sbjct: 411 YESAIAQLSPEDQK-LPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVK 464
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 307 bits (787), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 234/371 (63%), Gaps = 12/371 (3%)
Query: 55 PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN 114
P+ + +P A T+PF LD FQ +I +E V V+AHTSAGKTV+AEYA+A S
Sbjct: 181 PISKHKSPIP-PARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLR 239
Query: 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGS 174
K R IYTSPIKALSNQKYR+ F DVGL+TGD IN A+CLVMTTEILRSMLYRGS
Sbjct: 240 DKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGS 299
Query: 175 DVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTK 234
+V+R++ +VIFDE+HY+ D ERG VWEE +ILLP + V LSAT+PN ++FA+W+
Sbjct: 300 EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIH 359
Query: 235 KTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEK 294
+ +VV T RP PL+H+L+ + + L+ + + F + A KQ +
Sbjct: 360 RQPCHVVYTDFRPTPLQHYLFPSG---SDGIHLVVDEKSNFREENFQRAMSALMEKQGDD 416
Query: 295 GGSGGGKLNGPFTRGAE------KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
+ K N + + +++ + K+ N PV++F+ S++ C+ A +
Sbjct: 417 PAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYN-PVIVFSFSKRECEALALQMS 475
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+D + TE+ + F +++ L +E DR LPQ++ + LL+ GIG+HHSG+LPILKE+
Sbjct: 476 KLDMNDQTERDLVTTIFNNAVNQL-SEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEV 534
Query: 409 VEMLFQKGLVK 419
+E+LFQ+GL+K
Sbjct: 535 IEILFQEGLLK 545
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/356 (44%), Positives = 224/356 (62%), Gaps = 16/356 (4%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A T+PFELD FQ AI +E V V+AHTSAGKTVIAEYAIA + ++ R IYTSPIK
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIK 178
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
+LSNQKYR+ F DVGL+TGD IN +ASCL+MTTEILR+MLY+ S+++ ++ +VIFD
Sbjct: 179 SLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFD 238
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
EVHY+ D +RG VWEE LILLP + + LSAT+PN L+FA W+ K +VV T R
Sbjct: 239 EVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYR 298
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV---KCRKQLEKGGSGGGKLN 303
P PL+HF+Y + ++++ + + +F T + EV R++ S K +
Sbjct: 299 PTPLQHFIYPQGA---DGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKS 355
Query: 304 GPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHR 363
R +N + ++ P+++F S+K C+ NA +D + K +
Sbjct: 356 SSLER---------IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTE 406
Query: 364 FFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
F +I L +E+DR L Q + + LL GIG+HHSG+LPILKE+VE+LFQ+GLV+
Sbjct: 407 IFDSAINQL-SEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVR 461
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 187/358 (52%), Gaps = 16/358 (4%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130
PF LD FQ++A LE + V V A T AGKTV+ E+A+ L+ ++ YT+P+KALSN
Sbjct: 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSN 74
Query: 131 QKYRDFRETF--QDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188
QK+ D + +GL+TGD +N A +VMTTE+LR+MLY S L+ L YV+ DEV
Sbjct: 75 QKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEV 134
Query: 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 248
H++ D RG VWEEV++ LP +V +V LSATV N EF W+ T + VV RPV
Sbjct: 135 HFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWI-QTVRGDTTVVVDEHRPV 193
Query: 249 PLKHFLYVGPVLEKNQLFLIREAEGEF-----LTRGYLAAKEVKCRKQLEKGGSGGGKLN 303
PL + VG + + I EAEG+ L R +E + G G+
Sbjct: 194 PLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMADWQPRRRGSGRPG 253
Query: 304 GPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL--SMDFSTATEKSKI 361
F R + I+ L+ LP + F SR CD L + ++ E+++I
Sbjct: 254 --FYRPPGRPEVIAKLD---AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARI 308
Query: 362 HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+L + D L + E LL+ G+ HH+G+LP + VE LF GLVK
Sbjct: 309 AEVIDHRCGDLADSDLAVLGYYEWREGLLR-GLAAHHAGMLPAFRHTVEELFTAGLVK 365
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 208/411 (50%), Gaps = 65/411 (15%)
Query: 51 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 110
D ++D D + I + F +D FQ+ AI + V V+A TS+GKT+IAE A
Sbjct: 136 DFGVEMIDIDELISI----YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAV 191
Query: 111 LSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLVTGDFQINTTASCLVMTTEILRS 168
+ R YT+P+KALSNQK+R+FRETF D VGL+TGD IN A ++MTTEILR+
Sbjct: 192 STVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRN 251
Query: 169 MLYRGSDV------LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222
MLY+ + L ++ ++ DEVHY++D RG VWEE++I PKEV ++ LSATV N
Sbjct: 252 MLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVAN 311
Query: 223 TLEFADWVGNTKKTKVYVVSTLKRPVPL------KHFLYVGPVLEKNQLFLIREAEGEFL 276
E A W+G K +V++ +RPVPL KH L P+L++ + + R+ +L
Sbjct: 312 PDELAGWIGEI-HGKTELVTSTRRPVPLTWYFSTKHSLL--PLLDEKGINVNRKLSLNYL 368
Query: 277 TRGYLAAKEVKCR------KQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQ---- 326
L+A E + R ++ GG + L + +N +R+SQ
Sbjct: 369 Q---LSASEARFRDDDDGYRKRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQI 425
Query: 327 -----------NLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS-------KIHRFFQDS 368
LP + F +R+ CD + + EKS K + D+
Sbjct: 426 SDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDA 485
Query: 369 IRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+R + E+ L GI HH+G LP+ K +E LFQ+GLVK
Sbjct: 486 VR-------------ESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVK 523
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 186/365 (50%), Gaps = 27/365 (7%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130
PF LD FQ++A LE + V V A T AGKTV+ E+A+ L+ + YT+P+KALSN
Sbjct: 15 PFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSN 74
Query: 131 QKYRDFRETF--QDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188
QKY D + +GL+TGD +N + +VMTTE+LR+MLY S L+ L +V+ DEV
Sbjct: 75 QKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADSFALQGLSHVVMDEV 134
Query: 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 248
H+I D RG VWEEV++ LP +V +V LSATV N EF WV T + VV RPV
Sbjct: 135 HFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWV-QTVRGDTTVVVDEHRPV 193
Query: 249 PLKHFLYVGPVLEKNQLFLIREAEGEF--------LTRGYLAAKEV----KCRKQLEKGG 296
PL + VG +LF + + + L R +E R + G
Sbjct: 194 PLWQHVLVG-----KRLFDLFDYDSNVDQSPVNPNLLRHIAHCREADRMSDWRNPRRRAG 248
Query: 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL--SMDFST 354
G G + F R + I+ L+ LP + F SR CD L + ++
Sbjct: 249 RGSG-VRPRFYRSLARPEVIAILD---AEGLLPAITFVFSRFGCDAAVQQCLRSPLRLTS 304
Query: 355 ATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQ 414
E+++I +L + D L + E LL+ G+ HH+G+LP + VE LF
Sbjct: 305 EEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLR-GLAAHHAGMLPAFRHAVEELFT 363
Query: 415 KGLVK 419
GLVK
Sbjct: 364 AGLVK 368
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 165/352 (46%), Gaps = 56/352 (15%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYA-IALSQNHKTRTIYTSPIKALSNQKYRD 135
Q +A+ K L E + +T T++GKT++AE I+ N + IY +P++AL+++KY
Sbjct: 31 QTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSEKYST 90
Query: 136 FRETFQ---DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188
F++ + VG+ +GD+ + +V T E L S+ ++ L+D++Y + DE
Sbjct: 91 FKDWEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSLWRHSAEWLKDIDYFVLDEF 150
Query: 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 248
HY+ND +RG V E V + ++ I+ LSAT+ N + A W+ +V+T RPV
Sbjct: 151 HYMNDGDRGPVVEGVAVRAKRQGTILALSATIGNAKDVAKWLNAD------IVATNWRPV 204
Query: 249 PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTR 308
PLK G + ++ K L G+ KL G
Sbjct: 205 PLKE--------------------------GVMYSEGKKGHIILYSDGT-TNKLKG---- 233
Query: 309 GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS-MDFSTATEKSKIHRFFQD 367
+ + L+ L K V++F SRK + A + M+F +K +
Sbjct: 234 --DDPIIAYTLDILSKGGQ--VIVFRSSRKYAETTAMKISQYMNFVKLDDKK-----LLE 284
Query: 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ ++ +D + + L L+ G+ HH+G+ L++I+E F++ ++K
Sbjct: 285 TAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIK 336
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 167/353 (47%), Gaps = 58/353 (16%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAI-ALSQNHKTRTIYTSPIKALSNQKYRD 135
Q +A+ K L + N + +T+ T +GKT+IAE I + + + IY +P++AL+N+KY
Sbjct: 28 QTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLT 87
Query: 136 FRETFQDVG----LVTGDFQINTT----ASCLVMTTEILRSMLYRGSDVLRDLEYVIFDE 187
F++ ++ +G + +GD+ + ++ T E L S+ D L + Y + DE
Sbjct: 88 FKD-WESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPDWLNEANYFVLDE 146
Query: 188 VHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRP 247
+HY+ND ERG V E V I K ++ LSAT+ N + A W+G V+T RP
Sbjct: 147 LHYLNDPERGPVVESVTI-RAKRRNLLALSATISNYKQIAKWLGAEP------VATNWRP 199
Query: 248 VPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFT 307
VPL + +K L R+ K++G
Sbjct: 200 VPLMEGVMYPERKKKEYTILFRDNTAR--------------------------KVHG--- 230
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS-MDFSTATEKSKIHRFFQ 366
+ + L+ L S+N V++F SRK + A + + M+F + EK+
Sbjct: 231 ---DDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKA-----IS 280
Query: 367 DSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ ++ L + ++ + + L+ L+ G+ HH+G+ L++I+E F+K +K
Sbjct: 281 EILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIK 333
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 162/354 (45%), Gaps = 61/354 (17%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKY 133
Q +AI K L + + VT+ T++GKT+IAE + LS+ K IY +P++AL+N+KY
Sbjct: 31 QSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKA--IYITPLRALTNEKY 88
Query: 134 RDFR--ETFQ-DVGLVTGDFQINTT----ASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
F+ ET G+ +GD+ + +V T E L S+ + L ++ Y + D
Sbjct: 89 NTFKDWETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLNEVSYFVLD 148
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
E HY+ND ERG E V I K ++ LSAT+ N E A+W+ +V+T R
Sbjct: 149 EFHYLNDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWLNAE------LVATNWR 202
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306
PVPLK G + + + F++ K+ RK
Sbjct: 203 PVPLKE----GIIYPEKKGFVV-------------VYKDNTSRKVY-------------- 231
Query: 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS-MDFSTATEKSKIHRFF 365
+ + L+ + K V++F SRK + A ++ M+F +K
Sbjct: 232 ---GDDAIIAYTLDIVSKGGQ--VLVFRSSRKLAENTARKIVQYMNFVKLEDKK-----L 281
Query: 366 QDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ R ++ +D + + L L+ G+ HH+G+ L++I+E F+ ++K
Sbjct: 282 LEIARKIKEVEDAGSNEKEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILK 335
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 75/353 (21%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 131
FEL Q+ AI + + ++ V+ T+AGKT+IA AI + K ++IY P+++L+ +
Sbjct: 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAME 80
Query: 132 KYRD---FRETFQDVGLVTGDFQINTT----ASCLVMTTEILRSMLYRGSDVLRDLEYVI 184
KY + RE V L G++ +++T+E S+++ ++ ++ ++
Sbjct: 81 KYEELSRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLMV 140
Query: 185 FDEVHYINDSERGHVWEEVLI---LLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVV 241
DE+H I D RG E V+ + E I+ LSATV N E A+W+ + ++
Sbjct: 141 IDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWLNAS------LI 194
Query: 242 STLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGK 301
+ RPVPLK VG +L +N+LFL +G+ A +V +++ GG+
Sbjct: 195 KSSFRPVPLK----VG-ILYRNRLFL----DGD-------ARSDVDINLLVKETVDDGGQ 238
Query: 302 LNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI 361
V++F SRKR + A NL
Sbjct: 239 ----------------------------VLIFVSSRKRAEDMAKNL-------------- 256
Query: 362 HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQ 414
+ F D I +L+ + A L ++L +G+ HH+G+ + +E F+
Sbjct: 257 SQLF-DPINDLKVSSEDANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFR 308
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 154/369 (41%), Gaps = 85/369 (23%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSN 130
FE QA +E+ ++ V A T +GKT IA AI S R Y P+K+++
Sbjct: 29 FEPQYMALQA--GVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAY 86
Query: 131 QKYRDFRETFQDVGL----VTGDFQINTT-ASCLVMTTEILRSMLYRGSDVLRDLEYVIF 185
+KY F +GL GDF+ A ++ T E S+L + R++ +I
Sbjct: 87 EKYTSF-SILSRMGLKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNVSVLIV 145
Query: 186 DEVHYINDSERGHVWEEV---LILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVS 242
DE+H ++D +RG + E + ++ E +V LSATVPN E A+W+G +V
Sbjct: 146 DEIHSVSDPKRGPILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIGGK------IVE 199
Query: 243 TLKRPVPLKHFLY--------VGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEK 294
+ RPVPL+ +++ G + E +++ + + + LAA+ + E
Sbjct: 200 SSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYDLD--------LAAEAI------ED 245
Query: 295 GGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFST 354
GG ++FT SR+R + +
Sbjct: 246 GGQ--------------------------------ALVFTYSRRRA---------VTLAK 264
Query: 355 ATEKSKIHRFFQDSIRNLQNEDDRA--LPQ--VKRLEQLLKNGIGVHHSGILPILKEIVE 410
K R R E RA P+ + L L+ GI HH+G+ P L++ VE
Sbjct: 265 RAAKRLGRRLSSREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVE 324
Query: 411 MLFQKGLVK 419
F+ G VK
Sbjct: 325 EAFRAGAVK 333
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 129
F+ D +Q++ + L+ VFV A TS+GKT I+ YA+ L N IY +P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 130 NQ----KYRDFRETFQDVG-----LVTGDFQINTTASCLVMTT--EILRSMLYR---GSD 175
NQ Y F + + G + T D++IN +C V+ T +L+SML + +
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853
Query: 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKK 235
+ +IFDE+H I E G V E++L+L P IV LSATV N EF W+ ++
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSALQR 911
Query: 236 TKVYVVSTL---KRPVPLKHFLYVG 257
Y + + R L+ F+Y G
Sbjct: 912 AHSYPIHLIVHEHRYSDLRKFVYGG 936
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 390 LKNGIGVHHSGILPILKEIVEMLFQKG 416
L GIG+HHSG+ ++IVE+LF+ G
Sbjct: 1221 LYRGIGIHHSGLNRRYRQIVEVLFRCG 1247
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 160/359 (44%), Gaps = 77/359 (21%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ 131
F+L Q+ AI ++ + +V V+ T+AGKT+IA AI + ++IY P+++L+ +
Sbjct: 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAME 80
Query: 132 KYRDFRETFQDVGL----VTGDFQINTT----ASCLVMTTEILRSMLYRGSDVLRDLEYV 183
K+ + +D+GL GD+ + +++T+E S+L+ +L D+ +
Sbjct: 81 KFSEL-SRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLL 139
Query: 184 IFDEVHYINDSERGHVWEEVLIL---LPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYV 240
+ DE+H I D RG E V + + +V I+ LSATV N +E A W+ + +
Sbjct: 140 VLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWLDAS------L 193
Query: 241 VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGG 300
+ + RPVPLK +L ++QL+L +G+ R ++ ++ R+ +E G
Sbjct: 194 IKSDFRPVPLKT-----GILYRDQLYL----DGK--RRSGVSINQI-IRETVEDNGQ--- 238
Query: 301 KLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK 360
V++F SRK+ + A +L + S A
Sbjct: 239 -----------------------------VLMFVSSRKKAEDTARDLAQIFGSDA----- 264
Query: 361 IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
N++ D L ++L G+ HH+G+ + +E F+ +K
Sbjct: 265 ----------NIKISSDETNVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFRARRIK 313
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 159/343 (46%), Gaps = 68/343 (19%)
Query: 87 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-- 141
E ++ V T++GKT+IAE AIA L + K +Y P+KAL+ +K+R+F++ +
Sbjct: 38 EGENLLVAIPTASGKTLIAEIAIANKLLEEGGKA--VYIVPLKALAEEKFREFKDWERLG 95
Query: 142 -DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSER 196
V + TGD+ ++ T E S+L GS +RD++ ++ DE+H I +R
Sbjct: 96 LKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIRDVKMLVIDEIHLIGSRDR 155
Query: 197 GHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV 256
G E ++ + I+ LSAT+ N E A+W+ N K ++ + RPV L+ ++
Sbjct: 156 GATLEFIITQMLGRAQIIGLSATIGNPEELAEWL-NAK-----LIRSDWRPVKLRKGVFY 209
Query: 257 GPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFI 316
Q F+ E G + Y + +E+ ++KG +GA +
Sbjct: 210 -------QGFVFWEDGG---SERYNSWEEL-VYDAVKKG------------KGA-----L 241
Query: 317 SFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNED 376
F+N RK++ + L + D+ L + + + E++
Sbjct: 242 VFVNMRRKAEKTALELAKKVKNYLDRKELRELR-ELAESLEEN----------------- 283
Query: 377 DRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
P ++L + L +G+ HH+G+ + +VE F+KGL+K
Sbjct: 284 ----PTNEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIK 322
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 156/351 (44%), Gaps = 72/351 (20%)
Query: 89 NHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD---- 142
++VFV A T +GKT+ AE+AI L Q+ + R +Y +P++AL+ Q Y D+ E FQD
Sbjct: 1344 DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1403
Query: 143 -VGLVTG----DFQINTTASCLVMTTE--ILRSMLYRGSDVLRDLEYVIFDEVHYINDSE 195
V L+TG D ++ + ++ T E + S ++ ++++ + DEVH I E
Sbjct: 1404 KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG-GE 1462
Query: 196 RGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 248
G V E + + + + IV LS+++ N + A W+G T + RPV
Sbjct: 1463 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG-CSATSTFNFHPNVRPV 1521
Query: 249 PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTR 308
PL+ L++ Q F I + L+ AK V
Sbjct: 1522 PLE--LHI-------QGFNISHTQTRLLS----MAKPV---------------------- 1546
Query: 309 GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDS 368
+ + S PV++F SRK+ A ++L+ + + +H +D
Sbjct: 1547 ---------YHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1597
Query: 369 IRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
I L+ D L++ L NG+G H G+ P+ + +VE LF G ++
Sbjct: 1598 IPYLEKLSDST------LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1642
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 149/362 (41%), Gaps = 86/362 (23%)
Query: 85 LEEHNHVFVTAHTSAGKTVIA------EYAIALSQNHKT-----RTIYTSPIKALSNQKY 133
LE ++ + A T AGKT +A E ++ + + IY +P+++L +
Sbjct: 493 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 552
Query: 134 RDFRETFQDVGL----VTGDFQIN----TTASCLVMTTEILRSMLYRGSD--VLRDLEYV 183
F + G+ +TGD Q+ + +V T E + +G + + + +
Sbjct: 553 GSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLI 612
Query: 184 IFDEVHYINDSERGHVWEEVLI-------LLPKEVCIVMLSATVPNTLEFADWVGNTKKT 236
I DE+H ++D +RG V E ++ + ++V ++ LSAT+PN + A ++
Sbjct: 613 ILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAK 671
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296
++ RPVPL+ YVG + EK + + + E+ K +E G
Sbjct: 672 GLFYFDNSFRPVPLEQ-TYVG-ITEKKAI------------KRFQIMNEIVYEKIMEHAG 717
Query: 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTAT 356
K+Q V++F SRK + A + M
Sbjct: 718 ---------------------------KNQ---VLVFVHSRKETGKTARAIRDM----CL 743
Query: 357 EKSKIHRFFQD---SIRNLQNEDDRALPQVKRLE--QLLKNGIGVHHSGILPILKEIVEM 411
EK + F ++ S L+ E + Q K LE LL G +HH+G+ + + +VE
Sbjct: 744 EKDTLGLFLREGSASTEVLRTEAE----QCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 799
Query: 412 LF 413
LF
Sbjct: 800 LF 801
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 159/344 (46%), Gaps = 69/344 (20%)
Query: 87 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
E ++ + T++GKT+++E + LS+ K +Y P+KAL+ +KYR+F+E ++ +
Sbjct: 38 EGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKA--VYLVPLKALAEEKYREFKE-WEVL 94
Query: 144 GL----VTGDFQINTT----ASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE 195
GL TGD+ +V T E S+L G+ ++D++ V+ DEVH I +
Sbjct: 95 GLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGASWIKDVKLVVADEVHLIGSYD 154
Query: 196 RGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 255
RG E +L + + I+ LSATV N E A+W+ + +V + RPV L+
Sbjct: 155 RGATLEMILTHMLGKAQILALSATVGNAEELAEWLDAS------LVVSDWRPVELRK--- 205
Query: 256 VGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLF 315
V QLF GK++ +N
Sbjct: 206 --GVFHLGQLFW------------------------------EDGKID-----HYPENWE 228
Query: 316 ISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNE 375
L+ ++K + ++F +R+ ++ A + LS S K + R ++ I ++++
Sbjct: 229 SLVLDAVKKGKQ--ALVFVNTRRSAEKEAIS-LSSKVSKLLTKPETRR-LEELISSIEDN 284
Query: 376 DDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
P ++L++ LK G+ HH+G+ + ++E F+ GL+K
Sbjct: 285 -----PTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIK 323
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 152/360 (42%), Gaps = 69/360 (19%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 136
Q +AI + L + ++ T++GKT++AE A+ S + IY P+KAL+++KY F
Sbjct: 28 QAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEKYDRF 87
Query: 137 RETFQ--------DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVI 184
E + VG+ TGDF +V T+E S+L G+ L L V+
Sbjct: 88 LEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGASWLSGLSVVV 147
Query: 185 FDEVHYINDSERGHVWEEVLILLPK---EVCIVMLSATVPNTLEFADWVGNTKKTKVYVV 241
DEVH I+ RG E L L K + I+ LSAT+ N A W+ +V
Sbjct: 148 ADEVHLIDSPNRGPTLEVTLAKLRKINVNLQILALSATIGNAKALAKWM------DAALV 201
Query: 242 STLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKC--RKQLEKGGSGG 299
+ RP LK ++ G + + E T EV LE+GG
Sbjct: 202 QSEWRPTTLKEGVFYGRAITFKK---------EKRTVNNAGPDEVNSLVADTLEEGGQ-- 250
Query: 300 GKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359
+ F N + S+++ Q A LS A EK
Sbjct: 251 ---------------CLVFANTRKSSESIA------------QKVARSLSKKLQPA-EKE 282
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ + QD +R+ + + ++L + + NG+ HH+G+ + IVE F++ ++K
Sbjct: 283 QLAKLKQDVLRHAETD------TCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILK 336
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 155/355 (43%), Gaps = 64/355 (18%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR-- 134
Q +A+ K L E ++ T++GKT++AE A+ S + +Y P++AL+++K+R
Sbjct: 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYIVPLRALASEKFRRF 87
Query: 135 -DFRETFQDVGLVTGDFQINTTA----SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189
DF E VG+ TGD+ +V T+E S+L + ++++ V+ DEVH
Sbjct: 88 QDFSELGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNETAWMQEISVVVVDEVH 147
Query: 190 YINDSERGHVWEEVLILLPK--EVC-IVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
I+ ++RG E L L K C I+ LSATV N E A W+ +V + R
Sbjct: 148 LIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWL------DAELVLSEWR 201
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306
P L EG F + + K +Q P
Sbjct: 202 PTDL--------------------MEGVFFDGTFFCKDKEKLIEQ-------------P- 227
Query: 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFST--ATEKSKIHRF 364
T+ NL L+ LR+ ++F SRK C A S T A +K K+
Sbjct: 228 TKDEAINL---VLDTLREGGQ--CLVFESSRKNCMGFAKKATSAVKKTLSAEDKEKLAGI 282
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ + N +E D A L ++ G HH+G+ L+E+VE F++G VK
Sbjct: 283 ADEILEN--SETDTA----SVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVK 331
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 20/186 (10%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAI---ALSQNHK---TRTIYTSPIKALSNQKYRDFRE 138
L++ + + T++GKT+I E A+ L +N+ + ++ P+KAL+++K+ +F++
Sbjct: 29 LDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEFQK 88
Query: 139 TFQ----DVGLVTGDFQINTTAS---CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYI 191
++ VG+ GD+ S ++ T+E L S++ + ++DL + DE+H I
Sbjct: 89 KYETYGIKVGMSIGDYDTKEDLSKYNIIITTSEKLDSLMRHNIEWIKDLSLAVIDEIHLI 148
Query: 192 NDSERGHVWEEVLILLPK-EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL 250
D+ERG E +L L IV LSATV N E A+W+ N K +V+ RPV L
Sbjct: 149 GDNERGGTLEVILTKLKNINAQIVGLSATVGNPEEIANWL-NAK-----LVTDEWRPVEL 202
Query: 251 KHFLYV 256
K +Y+
Sbjct: 203 KKGIYL 208
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 70/366 (19%)
Query: 73 ELDVFQKQAIIK--LEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRT----IYTSP 124
EL QK+A+ + L+++ + ++ T++GKT+I E A+ L +K T I+ P
Sbjct: 15 ELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVP 74
Query: 125 IKALSNQKYRDFRETFQDVGL----VTGDFQINTTAS---CLVMTTEILRSMLYRGSDVL 177
+KAL+++KY +F+ ++ GL GD+ + S ++ T E L S+ D +
Sbjct: 75 LKALASEKYEEFKSKYERYGLRIALSIGDYDEDEDLSKYHLIITTAEKLDSLWRHKIDWI 134
Query: 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPK-EVCIVMLSATVPNTLEFADWVGNTKKT 236
D+ V+ DE+H IND RG E +L L + V I+ LSAT+ N E A+W+
Sbjct: 135 NDVSVVVVDEIHLINDETRGGTLEILLTKLKEFNVQIIGLSATIGNPDELAEWLN----- 189
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL---IREAEGEFLTRGYLAAKEVKCRKQLE 293
++ RPV LK +Y +E F+ IRE + + + V C K+
Sbjct: 190 -AELIVDDWRPVELKKGIYKNEAIE----FINGEIREIKA--VDNNDIYNLVVDCVKE-- 240
Query: 294 KGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFS 353
GG ++F +++ A L F
Sbjct: 241 -GGC--------------------------------CLVFCNTKRNAVNEAKKLNLKKFL 267
Query: 354 TATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
T EK ++ ++ + L+ + K L + + NG HH+G+ ++IVE F
Sbjct: 268 TEEEKIRLKEIAEEILSILEPPTE----MCKTLAECILNGSAFHHAGLTYQHRKIVEDAF 323
Query: 414 QKGLVK 419
+K L+K
Sbjct: 324 RKRLIK 329
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 152/358 (42%), Gaps = 68/358 (18%)
Query: 78 QKQAI-IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 136
Q +A+ + E ++ + T++GKT+IAE A+ S + +Y P++AL+++K DF
Sbjct: 29 QAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASEKQADF 88
Query: 137 RETFQ---DVGLVTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189
E Q D+G+ TG+++ +V T+E + S++ + + DL V+ DEVH
Sbjct: 89 EEFEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRNDAPWIEDLTCVVTDEVH 148
Query: 190 YINDSERGHVWEEVLILLPK---EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
++D ERG E L L + ++ V LSAT+ N A W+ +V + R
Sbjct: 149 LVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWL------DAGLVDSDWR 202
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306
P+ L+ ++ G L L ++ + R LE GS
Sbjct: 203 PIDLQKGVHYG-----QALHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDGS--------- 248
Query: 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNA---ANLLSMDFSTATEKSKIHR 363
++F SR+ + A AN + ST E+ ++
Sbjct: 249 -----------------------TLVFVNSRRNAEAAAGRLANTVRPHLST-EERDQLAD 284
Query: 364 FFQD--SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ + + + DD L + +G HH+G+ +E+VE F+ LVK
Sbjct: 285 IAEEIRDVSDTETSDD--------LADAVADGAAFHHAGLSRGHRELVEDAFRDRLVK 334
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 147/339 (43%), Gaps = 69/339 (20%)
Query: 97 TSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK---YRDFRETFQDVGLVTGDFQIN 153
T++GKT++A+ A+ + + +Y P++AL+++K + F E VG+ TG ++
Sbjct: 49 TASGKTLVAQLAMLSAIDRGGTALYIVPLRALASEKREEFAAFEEYGLSVGVTTGSYEDT 108
Query: 154 ----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK 209
+V T+E + S++ G+ + DL+ V+ DEVH ++D RG E L L +
Sbjct: 109 GEWLADKDIIVATSEKVDSLVRNGAPWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRR 168
Query: 210 ---EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE----K 262
+ +V LSATV N E A+W+ +V + RP+ L+ ++ G L
Sbjct: 169 VNPNLQVVALSATVGNAGEMAEWL------DAELVDSSWRPIELRKGVHYGQALHFGDGT 222
Query: 263 NQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYL 322
Q ++ E E R+ L++GGS + F+N
Sbjct: 223 QQELPVQRTE---------KPTEAVVRETLDEGGS-----------------TLVFVNSR 256
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD--SIRNLQNEDDRAL 380
R ++ + KR + + L D E++ + ++ ++ + + DD
Sbjct: 257 RNAEG--------AAKRLAKTTVDGLDAD-----ERAALSSLAEEIRAVSDTETSDD--- 300
Query: 381 PQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L ++ G HH+G + +VE F+ L+K
Sbjct: 301 -----LADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIK 334
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 171/386 (44%), Gaps = 72/386 (18%)
Query: 48 EMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAE 106
E LD+ V F IM EL Q +A+ K L E ++ T++GKT++AE
Sbjct: 4 ESLDLPDEVKQFYLNSGIM------ELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAE 57
Query: 107 YAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLVTGDFQINTTA----SCL 159
A+ S + +Y P++AL+++K+R FRE + VG+ TGD+ + +
Sbjct: 58 LAMLKSILAGGKALYIVPLRALASEKFRRFREFSELGIRVGISTGDYDLRDEGLGVNDII 117
Query: 160 VMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK---EVCIVML 216
V T+E S+L + ++++ V+ DEVH I+ +RG E L L K I+ L
Sbjct: 118 VATSEKTDSLLRNETVWMQEISVVVADEVHLIDSPDRGPTLEVTLAKLRKMNPSCQILAL 177
Query: 217 SATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFL 276
SATV N E A W+ + +V + RP L ++ N F ++ E
Sbjct: 178 SATVGNADELAVWL------EAELVVSEWRPTELLEGVFF------NGTFYCKDRE---- 221
Query: 277 TRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLS 336
K +E+ T+ NL L+ L+K ++F S
Sbjct: 222 -------------KTVEQS-----------TKDEAVNL---ALDTLKKDGQ--CLVFESS 252
Query: 337 RKRC---DQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
RK C + AA+ + S A +++ + + + N +E D + L +++G
Sbjct: 253 RKNCMAFAKKAASTVKKTLS-AEDRNALAGIADEILEN--SETDTS----TNLAVCIRSG 305
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
HH+G+ L+E+VE F+ G +K
Sbjct: 306 TAFHHAGLTTPLRELVEDGFRAGRIK 331
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans
GN=C28H8.3 PE=3 SV=2
Length = 1714
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 24/199 (12%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 129
F D +Q++ + ++ N + A TSAGKT ++ Y I L + +Y +P KAL
Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842
Query: 130 NQK----YRDFRETFQDVGL-----VTGDFQINTTASCLVMTT--EILRS-MLYRGSDV- 176
NQ Y FR G+ +T ++ N C V+ T E L+ ML R V
Sbjct: 843 NQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAM-QCQVLITVPECLQELMLSRTPAVQ 901
Query: 177 --LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTK 234
+ ++YV+FDEVH I SE H+WE++L+L+ + + LSAT+ N + +W+ +++
Sbjct: 902 KFVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLHEWLNSSE 959
Query: 235 KTKVYVVSTLKRPVPLKHF 253
+ K S KR V L ++
Sbjct: 960 QAK----SAGKRKVELINY 974
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 154/344 (44%), Gaps = 76/344 (22%)
Query: 90 HVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL- 145
+ + T++GKT+IAE AI L + K +Y P+KAL+ +K+++F++ ++++GL
Sbjct: 41 NALIAIPTASGKTLIAEIAIVNRLLKEGGKA--VYLVPLKALAEEKFKEFKD-WEELGLK 97
Query: 146 ---VTGDFQINTT----ASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
TGD+ ++ T E S+L GS +R+++ ++ DE+H I +RG
Sbjct: 98 VAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGSSWIRNVKVLVVDEIHLIGSRDRGA 157
Query: 199 VWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP 258
E ++ + I+ LSAT+ N E A+W+ N K ++ + RPV L+ ++
Sbjct: 158 TLEFIITQMLNRAQIIGLSATIGNPEELAEWL-NAK-----LIKSDWRPVKLRRGVFY-- 209
Query: 259 VLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISF 318
+G++ ++ K K F E
Sbjct: 210 -------------------QGFVFWEDGKTEK---------------FNSWEE------- 228
Query: 319 LNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFF-QDSIRNLQN--E 375
L Y ++ ++F R++ ++ A L KI F + +R L+ E
Sbjct: 229 LVYDAIKRSKGSLVFVNMRRKAEKTALEL----------SKKIRNFLTKKELRELKELAE 278
Query: 376 DDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
P ++L + L+ G+ HH+G+ + +VE F+KGL+K
Sbjct: 279 SLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIK 322
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 153/362 (42%), Gaps = 67/362 (18%)
Query: 65 IMAHTWPF--ELDVFQKQAIIK--LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120
I+ +P EL+ Q+ AI LE ++ + T++GKT++ A + R I
Sbjct: 11 ILGDCYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGGRVI 70
Query: 121 YTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDL 180
YT P+ ++ N+K ++FR+ ++ G+ G + T+ VM E S+ ++LR++
Sbjct: 71 YTVPLLSIQNEKIKEFRK-LEEHGIRVG--KDPRTSDIAVMVFESFDSLTRFSWNILREV 127
Query: 181 EYVIFDEVHYINDSERGHVWEEVLI---LLPKEVCIVMLSATVPNTLEFADWVGNTKKTK 237
+ +I DE H I + RG V E + L V IV LSAT+ N E A W+
Sbjct: 128 DLLIVDEFHMIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL------D 181
Query: 238 VYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGS 297
VV RPVPL VL+ ++F +RE L K LE+
Sbjct: 182 ARVVEHDYRPVPLHR-----EVLD-TEMFGVREKNDVVL-------------KVLERSLE 222
Query: 298 GGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATE 357
G SQ L V S +R ++ A+ L+ S
Sbjct: 223 DG-------------------------SQTLAFV----STRRFTESLASHLADKISGKIP 253
Query: 358 KSKIHRFFQDSIRNLQNEDDRALPQVK---RLEQLLKNGIGVHHSGILPILKEIVEMLFQ 414
+ F + + + L+ R P +L + L+ GI HH+G+ +EI+E F+
Sbjct: 254 DDMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFR 313
Query: 415 KG 416
G
Sbjct: 314 DG 315
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 13/178 (7%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 144
L + ++ V T++GKT+IAE A+ + + +Y P+KAL+++KY +F VG
Sbjct: 36 LLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVG 95
Query: 145 LVTGDFQINTTA----SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVW 200
L TGD A +V T+E + S+L G+ + D+ V+ DE+H I+ +RG
Sbjct: 96 LSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVVIDEIHLIDSPDRGPTL 155
Query: 201 EEVLILLPKE---VCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 255
E V+ + + + ++ LSAT+ N A W+ +V++ RPV L+ ++
Sbjct: 156 EMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWL------DAELVTSSWRPVDLRQGVF 207
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 78 QKQAI-IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 136
Q +AI + L E ++ T++GKT++AE A+ + + +Y P++AL+++K+ F
Sbjct: 28 QAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALASEKFERF 87
Query: 137 RETFQ---DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189
+E VG+ TGD +V T+E S+L G+ + ++ V+ DE+H
Sbjct: 88 KELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRNGTSWMDEITTVVVDEIH 147
Query: 190 YINDSERGHVWEEV---LILLPKEVCIVMLSATVPNTLEFADWVG 231
++ RG E L+ L +V +V LSATV N E ADW+G
Sbjct: 148 LLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLG 192
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 70/363 (19%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRT-------IYTSPIKA 127
Q +A+ + + E ++ + T++GKT+IA+ A+ A+++ + T +Y P++A
Sbjct: 29 QAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRA 88
Query: 128 LSNQKYRDFRETFQ----DVGLVTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRD 179
L+ +K ++F E F+ VG+ TG+++ + +V T+E + S++ G+ + D
Sbjct: 89 LAGEKAQEF-EAFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWIDD 147
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC---IVMLSATVPNTLEFADWVGNTKKT 236
L V+ DEVH ++D RG E L L ++V +V LSATV N E A W+
Sbjct: 148 LSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL------ 201
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296
+V + RP+ L+ ++ G L + +AE L+ G + L G
Sbjct: 202 DAELVDSDWRPIELRTGVHYGQSLHYDDGT---QAE---LSVGSGSQTAAVVADTLADDG 255
Query: 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTAT 356
S + F+N R ++ S +R N LS +
Sbjct: 256 S-----------------TLVFVNSRRNAE--------ASARRLADVTGNALS-----SA 285
Query: 357 EKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
E+ ++ + IR + + + L + +G HH+G+ +E+VE F+
Sbjct: 286 ERERLADIAAE-IRGVSDTE-----TSDELADAVASGAAFHHAGLAREHRELVEEAFRDR 339
Query: 417 LVK 419
LVK
Sbjct: 340 LVK 342
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 70/363 (19%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRT-------IYTSPIKA 127
Q +A+ + + E ++ + T++GKT+IA+ A+ A+++ + T +Y P++A
Sbjct: 29 QAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRA 88
Query: 128 LSNQKYRDFRETFQ----DVGLVTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRD 179
L+ +K ++F E F+ VG+ TG+++ + +V T+E + S++ G+ + D
Sbjct: 89 LAGEKAQEF-EAFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWIDD 147
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC---IVMLSATVPNTLEFADWVGNTKKT 236
L V+ DEVH ++D RG E L L ++V +V LSATV N E A W+
Sbjct: 148 LSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL------ 201
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296
+V + RP+ L+ ++ G L + +AE L+ G + L G
Sbjct: 202 DAELVDSDWRPIELRTGVHYGQSLHYDDGT---QAE---LSVGSGSQTAAVVADTLADDG 255
Query: 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTAT 356
S + F+N R ++ S +R N LS +
Sbjct: 256 S-----------------TLVFVNSRRNAE--------ASARRLADVTGNALS-----SA 285
Query: 357 EKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
E+ ++ + IR + + + L + +G HH+G+ +E+VE F+
Sbjct: 286 ERERLADIAAE-IRGVSDTE-----TSDELADAVASGAAFHHAGLAREHRELVEEAFRDR 339
Query: 417 LVK 419
LVK
Sbjct: 340 LVK 342
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 97/180 (53%), Gaps = 20/180 (11%)
Query: 87 EHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
E + ++ T++GKT+IAE A+ L+Q K +Y P+KAL+ +K+++F++ ++ +
Sbjct: 38 EGKNALISIPTASGKTLIAEIAMVHRILTQGGKA--VYIVPLKALAEEKFQEFQD-WEKI 94
Query: 144 GL----VTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE 195
GL TGD+ ++ T E S+L GS ++D++ ++ DE+H I +
Sbjct: 95 GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154
Query: 196 RGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 255
RG E +L + + I+ LSAT+ N E A+W+ ++ + RPV L+ ++
Sbjct: 155 RGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVF 208
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 64/355 (18%)
Query: 78 QKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 136
Q +A+ K L E ++ T++GKT++AE A+ S + + +Y P++AL+++K+R F
Sbjct: 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEKFRRF 87
Query: 137 RE---TFQDVGLVTGDFQINTTA----SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189
+E VG+ TGD+ +V T+E S+L + ++++ V+ DEVH
Sbjct: 88 QEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNETAWMQEISVVVADEVH 147
Query: 190 YINDSERGHVWEEVLILLPK---EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
I+ +RG E L L + ++ LSATV N E A W+ +V + R
Sbjct: 148 LIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWL------DAELVLSEWR 201
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306
P L ++ N +F ++ E K G
Sbjct: 202 PTDLMEGVFY------NGIFYCKDKE----------------------------KPVGQP 227
Query: 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTAT--EKSKIHRF 364
T+ NL + + + ++F SRK C A +S T + ++ +
Sbjct: 228 TKDEAVNLVLDTIK-----EGGQCLVFESSRKNCMGFAKKAVSAVKKTLSNEDRETLAGI 282
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ I N + + L R +G HH+G+ L+E+VE F++G +K
Sbjct: 283 ADEIIENSETDVSSVLATCVR------SGTAFHHAGLTTPLRELVENGFREGRIK 331
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 162/388 (41%), Gaps = 92/388 (23%)
Query: 64 PIMAHTWPFE-LDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRT 119
P++ +PF+ + Q L N + FV + T +GKT++AE AI A +
Sbjct: 1129 PLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKI 1188
Query: 120 IYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTT------------ASCLVMTTEILR 167
+Y +P+KAL ++ D+R + + VTGD + T A+ ++ T E
Sbjct: 1189 VYIAPMKALVRERVDDWR---KKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFD 1245
Query: 168 --SMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-------PKEVCIVMLSA 218
S ++ ++D+ +I DE+H + S+RG + E ++ + + V ++ +S
Sbjct: 1246 GISRNWQTRKFVQDVSLIIMDEIHLLA-SDRGPILEMIVSRMNYISSQTKQPVRLLGMST 1304
Query: 219 TVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTR 278
V N + A W+G K +Y + RPVPLK ++ P N F
Sbjct: 1305 AVSNAYDMAGWLG-VKDHGLYNFPSSVRPVPLKMYIDGFP---DNLAF------------ 1348
Query: 279 GYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRK 338
C P + K +F++ + S + P ++F SR+
Sbjct: 1349 ---------C----------------PLMKTMNKPVFMAIKQH---SPDKPALIFVASRR 1380
Query: 339 RCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRA-----LPQV--KRLEQLLK 391
+ A +L+ + +D+ R N DD L QV L+ L+
Sbjct: 1381 QTRLTALDLIHL------------CGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLSLQ 1428
Query: 392 NGIGVHHSGILPILKEIVEMLFQKGLVK 419
GIG+HH+G++ + I LFQK ++
Sbjct: 1429 FGIGLHHAGLVQKDRSISHQLFQKNKIQ 1456
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 163/370 (44%), Gaps = 80/370 (21%)
Query: 83 IKLEEHNHVFVTAHTSAGKTVIA---------EYAIALSQNH------KTRTIYTSPIKA 127
+ + + ++ + A T AGKT IA ++++ +N + IY +P+KA
Sbjct: 298 VAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKA 357
Query: 128 LSNQKYRDFRETFQDVGL----VTGDFQINTT---ASCLVMTT----EILRSMLYRGSDV 176
L+ + F + + +TGD Q+ A+ +++TT +++ +D+
Sbjct: 358 LAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDL 417
Query: 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV-------CIVMLSATVPNTLEFADW 229
+ ++ +I DEVH +++ +RG V E ++ ++V I+ LSAT+PN ++ AD+
Sbjct: 418 VSKVKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADF 476
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCR 289
+G ++ ++ RP PL+ L +G RG +++ K
Sbjct: 477 LGVNRQIGMFYFDQSFRPKPLEQQL-LG-------------------CRGKAGSRQSK-- 514
Query: 290 KQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS 349
+ ++K KL+ RG + V++F SRK ++A N +
Sbjct: 515 ENIDK--VAYDKLSEMIQRGYQ------------------VMVFVHSRKETVKSARNFIK 554
Query: 350 MDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIV 409
+ A ++ F D I + + K ++++ + G G+HH+G+ + +
Sbjct: 555 L----AESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLT 610
Query: 410 EMLFQKGLVK 419
E +F+ G +K
Sbjct: 611 EKMFKDGAIK 620
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum
GN=DDB_G0278827 PE=3 SV=1
Length = 1816
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 22/215 (10%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALS 129
F+ D +Q + + +++ + A TS+GKT I+ Y L +++ ++ P KAL
Sbjct: 816 FKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFVCPTKALV 875
Query: 130 NQKYRD----FRETFQD----------VGLVTGDFQINTTASCLVMTTEILRSMLY---R 172
NQ Y + + + +Q VG+ T DF++N +++T +L+
Sbjct: 876 NQMYAEVLGRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLEILFLSIM 935
Query: 173 GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGN 232
+ ++ Y+IFDEVH I S G +WE +L+ P + LSAT+ N +F +++
Sbjct: 936 NTHFIQRCRYIIFDEVHQIASSVDGAIWERLLVFNP--APFLALSATLGNLTDFHNFLKK 993
Query: 233 TKKT-KVYVVSTLKRPVPLKHFLYVGPVLEKNQLF 266
KV ++ R LK+F + N+ F
Sbjct: 994 IDPNRKVSLIHYQSRFNDLKNFFLCQTPAKDNKSF 1028
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 15/183 (8%)
Query: 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR--ETFQDVG 144
+ V + T++GK+++AE A + +Y P+KAL+ +K F VG
Sbjct: 38 DGRSVLLCTATASGKSLLAEVAAVKAGLEGRMALYAVPLKALAYEKLVHFSYYRGLVKVG 97
Query: 145 LVTGDFQINTTA----SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVW 200
+ TGDF + +V+T E L S+L + L + V+ DE+HY+ D RG V
Sbjct: 98 VSTGDFDSDDRRLHEFDVVVVTYEKLDSLLRHRPNWLGLVGVVVVDEIHYLGDPRRGPVL 157
Query: 201 EEVLILLPK---EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 257
E ++ L + + LSATV N E A W+G +V + RPVPL+ +Y G
Sbjct: 158 ESIVAKLRHLGLKTQFIGLSATVGNAGEVAAWLGAR------LVESSWRPVPLREGVYHG 211
Query: 258 PVL 260
V+
Sbjct: 212 GVI 214
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 24/193 (12%)
Query: 78 QKQAI-IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKY 133
Q++AI L ++ + + T++GKT++AE +A N + +++ P+KAL+ +K
Sbjct: 29 QEEAIRAGLLNGENILMVSATASGKTLLAE--VAAVNNVLVNDKKSLVAVPLKALAFEKL 86
Query: 134 RDFRETFQDVGL----VTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIF 185
DF T+ ++G+ TGD+ + ++ T E L S+L + ++ +I
Sbjct: 87 NDF-NTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLRLKPSWIWNVGQLII 145
Query: 186 DEVHYINDSERGHVWEEV---LILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVS 242
DE+H+IND ERG + E + L +L I+ LSAT+ N E A+W+ N K +V
Sbjct: 146 DEIHFINDDERGPIIESIVAKLRMLNLNPQIIGLSATIGNPEELANWL-NAK-----LVK 199
Query: 243 TLKRPVPLKHFLY 255
+ RPV L+ +Y
Sbjct: 200 SDWRPVSLREGVY 212
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 179/424 (42%), Gaps = 98/424 (23%)
Query: 32 KISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 91
K S++ +++ + A+ + PV + + + +P+ + Q +A+ L +
Sbjct: 110 KFSHSASSNISNKDDAQ-YGIVTPVTEIPKQFRTVFKEFPY-FNYIQSKALEHLLYSDRN 167
Query: 92 FV-TAHTSAGKTVIAEYAIA--LSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVG 144
FV A T +GKTVI E AI L Q + +Y +PIKAL Q+Y D++ F VG
Sbjct: 168 FVLCAPTGSGKTVIFELAIIRLLMQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKFGPVG 227
Query: 145 L----VTGDFQINTT-----ASCLVMTTEILRSMLYRGSD--VLRDLEYVIFDEVHYIND 193
L +TGD +++ A ++ T E SM + D +++ + + DEVH + +
Sbjct: 228 LNCKELTGDTEMDDLFEIQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKE 287
Query: 194 SERG-----------------HVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKT 236
RG H+ E+ +P V +SAT+PN + ADW+ +
Sbjct: 288 ENRGATLEVVVSRMKTIYSLSHLSEDRKAFIPMR--FVAVSATIPNVEDIADWLSDENSP 345
Query: 237 KVYV-VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF-LTRGYLAAKEVKCRKQLEK 294
V + + RPV L+ + P K ++E +F LT Y A
Sbjct: 346 GVCMKMDESSRPVKLRKVVLGFPCSTK-------QSEFKFDLTLNYKIA----------- 387
Query: 295 GGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMD--F 352
N+ ++ S P ++F +RK Q AA++L+ D F
Sbjct: 388 ------------------NIIQTY------SDGRPTLVFCSTRKGV-QQAASILTKDAKF 422
Query: 353 STATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEML 412
+ E + + +SI++ +L +L+ G+G HH+G+ ++++E
Sbjct: 423 VMSIEHKQRLQKCANSIKD------------SKLRDVLQYGVGYHHAGVDISDRKVIENS 470
Query: 413 FQKG 416
F G
Sbjct: 471 FLIG 474
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 166/402 (41%), Gaps = 97/402 (24%)
Query: 54 KPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFV-TAHTSAGKTVIAEYAIALS 112
K V + AK + +P+ + Q +A L + FV A T +GKTV+ E AI
Sbjct: 262 KAVTEIPAKFRSIFKEFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRL 320
Query: 113 QNH------KTRTIYTSPIKALSNQKYRDFRETFQDVGL----VTGD------FQINTTA 156
+ +Y +PIKAL +Q++ D++E F +GL +TGD F+I A
Sbjct: 321 LMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQ-HA 379
Query: 157 SCLVMTTEILRSML--YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCI- 213
++ T E SM +R + +++ + + DEVH + D RG E V+ + +
Sbjct: 380 HIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVS 439
Query: 214 --------------VMLSATVPNTLEFADWVGNTKKTKVYV-VSTLKRPVPLKHFLYVGP 258
V +SAT+PN + A+W+ + ++ V + + RPV L+ + P
Sbjct: 440 QTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFP 499
Query: 259 VLEKNQLFLIREAEGEF-LTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFIS 317
NQ E +F LT Y A ++
Sbjct: 500 C-SSNQ------TEFKFDLTLNYKIASVIQMY---------------------------- 524
Query: 318 FLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMD---FSTATEKSKIHRFFQDSIRNLQN 374
S P ++F +RK Q AA++L D T +K ++ ++ S+R+
Sbjct: 525 -------SDQKPTLVFCATRKGV-QQAASVLVKDAKFIMTVEQKQRLQKYAY-SVRD--- 572
Query: 375 EDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L +LK+G HH+G+ +++VE F G
Sbjct: 573 ---------SKLRDILKDGAAYHHAGMELSDRKVVEGAFTVG 605
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 146/368 (39%), Gaps = 82/368 (22%)
Query: 73 ELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAI------ALSQNHKTRTIYTSPI 125
E + Q +A + E N + +++ T +GKTV+ E AI S + T+ IY +P
Sbjct: 138 EFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPT 197
Query: 126 KALSNQKYRDFRETFQD--VGLVTGD---FQINTTASC--LVMTTEILRSMLYRGSDVLR 178
K+L + Y+++ +F + VG++T D + C ++ T E + R SD R
Sbjct: 198 KSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSR 257
Query: 179 DLEYV---IFDEVHYINDSERGHVWEEVLI---LLPKEVCIVMLSATVPNTLEFADWVGN 232
E V + DE+H I + +RG E +L + + + V LSATVPN + A W+
Sbjct: 258 LFELVKLVLVDEIHTIKE-KRGASLEVILTRMNTMCQNIRFVALSATVPNIEDLALWLKT 316
Query: 233 TKKTKVYVVSTLK--RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRK 290
+ ++S + R V L F+Y GY C+
Sbjct: 317 NNELPANILSFDESYRQVQLTKFVY-----------------------GY----SFNCKN 349
Query: 291 QLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM 350
+K KL + A+ N PV++F +R A LL+
Sbjct: 350 DFQKDAIYNSKLIEIIEKHAD---------------NRPVLIFCPTRASTISTAKFLLNN 394
Query: 351 DFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVE 410
+ ++K H P K L + ++ GI HH+GI + VE
Sbjct: 395 HIFSKSKKRCNHN-----------------PSDKILNECMQQGIAFHHAGISLEDRTAVE 437
Query: 411 MLFQKGLV 418
F G +
Sbjct: 438 KEFLAGSI 445
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 151/358 (42%), Gaps = 79/358 (22%)
Query: 90 HVFVTAHTSAGKTVIAEYAI-----------ALSQNHKTRTIYTSPIKALSNQKYRDFRE 138
++ ++A T AGKT IA I + IY +P+KAL+++ F
Sbjct: 500 NILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSN 559
Query: 139 TFQDVGLV----TGDFQINTT----ASCLVMTTEILRSMLYRGSDV--LRDLEYVIFDEV 188
+ + +G+V TGD Q+ +V T E + + SDV + + +I DE+
Sbjct: 560 SLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEI 619
Query: 189 HYINDSERGHVWEEVLILLPKEV-------CIVMLSATVPNTLEFADWVGNTKKTKVYVV 241
H +++ ERG V E ++ ++V IV LSAT+PN + A ++ + +
Sbjct: 620 HLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI-RAPASGTHFF 677
Query: 242 STLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGK 301
+ RPVPL ++G ++ NQ ++ + L C ++LEK G +
Sbjct: 678 DSSYRPVPLTQN-FIG--VKDNQGIMVMKNNMNQL-----------CYERLEKSLKEGHQ 723
Query: 302 LNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI 361
V++F SRK ++A L M A EK
Sbjct: 724 ----------------------------VMIFVHSRKDTVKSAEILSDM----AKEK--- 748
Query: 362 HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
H F + + + + + K + L ++GI VHH+G+L + +VE F G +K
Sbjct: 749 HFRFSNEEPSFGAKKEFEKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIK 806
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 167/406 (41%), Gaps = 91/406 (22%)
Query: 37 LPKH--VTQTEWAEMLDVSKPVL---DFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 91
LP+ V TE ++ + K L DF++ +H P + VF +N+V
Sbjct: 1291 LPQQDRVVNTELLDLQPLPKEALKNKDFESLFK-FSHFNPIQTQVFHTLYYT----NNNV 1345
Query: 92 FVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VG 144
+ + T +GKT+ AE A+ + +Y +P+KAL ++ D++ FQ+ +
Sbjct: 1346 LLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLV 1405
Query: 145 LVTGDFQINTTA---SCLVMTTE-----ILRSMLYRGSDVLRDLEYVIFDEVHYINDSER 196
+TGD+ N A + +V TT I R+ ++ + + +I DE+H I + R
Sbjct: 1406 ELTGDYTPNMIALQNADIVTTTPEKWDGISRN--WKNRSYVTSVSLLIIDEIHLIGEL-R 1462
Query: 197 GHVWEEV---LILLPKE----VCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVP 249
G + E + + L+ K+ + +V LS + N ++ ++W+G + ++ RPVP
Sbjct: 1463 GPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMG-IDRVGLFNFRPSCRPVP 1521
Query: 250 LKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRG 309
+ E +G+ GK P +
Sbjct: 1522 I-----------------------EVHIQGF------------------QGKNYCPRMQT 1540
Query: 310 AEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSI 369
K F + Y K PV++F SR++ A +L+S I + F
Sbjct: 1541 MNKPSFAAIATYSPKK---PVLIFVSSRRQTRLTALDLISYLVVDNDPLQWIQKGF---- 1593
Query: 370 RNLQNEDDRALPQVK--RLEQLLKNGIGVHHSGILPILKEIVEMLF 413
+ + L +VK L L GIG+HH+G+ + IVE LF
Sbjct: 1594 -----DIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLF 1634
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 158/373 (42%), Gaps = 78/373 (20%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAI-ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
LE N V+ +A TSAGKT++AE I + + ++ P +++ +K + FQ+V
Sbjct: 106 LEGKNLVY-SAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 164
Query: 144 GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDL---------EYVIFDEVHYINDS 194
G+ + +T+ S + +I + R + ++ L V+ DE+H + DS
Sbjct: 165 GIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDS 224
Query: 195 ERGHVWEEVLI------------------LLPKEVCIVMLSATVPNTLEFADWVGNTKKT 236
RG++ E +L L V IV +SAT+PN A W+
Sbjct: 225 HRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLN----- 279
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296
+ T RPVPL + VG + + + L+RE E +G
Sbjct: 280 -AELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKG----------------- 321
Query: 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTAT 356
+++ +S L Y N V+LF S+K C++ A++++ +F
Sbjct: 322 --------------DEDHVVS-LCYETICDNHSVLLFCPSKKWCEK-LADIIAREFYNLH 365
Query: 357 EKSK--IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKN--------GIGVHHSGILPILK 406
+++ + + Q E + Q++RL L + G+ HH+G+ +
Sbjct: 366 HQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEER 425
Query: 407 EIVEMLFQKGLVK 419
+I+E F++GL++
Sbjct: 426 DIIEGAFRQGLIR 438
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 153/381 (40%), Gaps = 99/381 (25%)
Query: 83 IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRT-------------------IYTS 123
I + + ++ + A T AGKT +A A+ + ++ + +Y +
Sbjct: 288 IAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIA 347
Query: 124 PIKALSNQKYRDFRETFQDVGL----VTGDFQINTT----ASCLVMTTE---ILRSMLYR 172
P+KAL+ + + +GL +TGD Q+ T LV T E ++
Sbjct: 348 PMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVG 407
Query: 173 GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV-------CIVMLSATVPNTLE 225
+ + + VI DEVH ++D ERG V E ++ + V IV LSAT+PN L+
Sbjct: 408 DTQLAEKVRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLD 466
Query: 226 FADWVGNTKKTKVYVVSTLKRPVPL-KHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284
AD++G + ++ S+ RP P+ +HF+
Sbjct: 467 VADFLGVNRYKGLFYFSSAFRPCPIEQHFI------------------------------ 496
Query: 285 EVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNA 344
G G K+ ++ F L +++ V++F SRK +A
Sbjct: 497 ----------GAKGSPKI---VNSNIDEACFDKVLKLIQEGHQ--VMIFVHSRKETINSA 541
Query: 345 ANLLSMDFSTATEKSKIHRFFQDSIRNLQNED------DRALPQVKRLEQLLKNGIGVHH 398
L F H D + N Q+E D + + K L++L K +G+H+
Sbjct: 542 KKLREQFF---------HEGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHN 592
Query: 399 SGILPILKEIVEMLFQKGLVK 419
+G+L + + E LF G++K
Sbjct: 593 AGMLRSDRHLTERLFSMGILK 613
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 152/352 (43%), Gaps = 89/352 (25%)
Query: 90 HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDF-RETFQDVGL- 145
++FV A T +GKT+ AE A AL K++ +Y +P+KAL ++ +D+ + +G+
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211
Query: 146 ---VTGDFQIN----TTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDS 194
+TGD + T A+ ++ T E I RS ++ ++D+ +I DE+H + S
Sbjct: 1212 MIELTGDTNPDVKAVTNANIIITTPEKWDGITRS--WKSRKYVQDVSLIILDEIHLLG-S 1268
Query: 195 ERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRP 247
+RG V E ++ + K+V ++ LS V N + A+W+ + ++ RP
Sbjct: 1269 DRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLN--IRDGLFNFRHSVRP 1326
Query: 248 VPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFT 307
VPL+ ++ +G F R Y C + + +N P
Sbjct: 1327 VPLEIYI-----------------DG-FPGRAY-------CPRMM--------SMNKP-- 1351
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD 367
+F S PV++F SR++ A +L++ +D
Sbjct: 1352 ---------AFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAF------------CGLED 1390
Query: 368 SIRNLQNEDDRALPQV------KRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
+ R D+ L + K L+ L GI +HH+G+ ++I E LF
Sbjct: 1391 NPRRFLYMDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELF 1442
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 27/185 (14%)
Query: 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKT--RTIYTSPIKALSNQKYRDFRETFQDVGLV 146
+ + + + TS+GKT+I E A + KT + ++ P+ AL+NQKY +F+E ++ +G
Sbjct: 228 DDLLIISATSSGKTLIGELA-GIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGFK 286
Query: 147 TG------------DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDS 194
D + + A +V T E + ++ + L+D+ V+ DE+H +N
Sbjct: 287 VSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIR--TKRLKDIGTVVIDEIHSLNLE 344
Query: 195 ERGHVWEEV---LILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL- 250
ERG + + L L KE + LSAT+ N E A K+ +V RPVPL
Sbjct: 345 ERGARLDGLIGRLRFLFKEAQKIYLSATIGNPKELA------KQLNAKLVLYNGRPVPLE 398
Query: 251 KHFLY 255
+H ++
Sbjct: 399 RHIIF 403
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 171/415 (41%), Gaps = 105/415 (25%)
Query: 53 SKPVLDFDAKVPIMAHTW--------------PFELDVFQKQAIIKLEEHNHVFVTAHTS 98
SKPV+D++ K W P + VF E +++ + A T
Sbjct: 469 SKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHA----AFEGDSNMLICAPTG 524
Query: 99 AGKTVIAEYAI--ALSQNHKTRT----------IYTSPIKALSNQKYRDFRETFQDVGL- 145
+GKT IA + ALS ++ +T +Y +P+KAL ++ R+F+ +G+
Sbjct: 525 SGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIK 584
Query: 146 ---VTGDF-----QINTTASCLVMTTEILRSMLYRGSDVLRDLEYV---IFDEVHYINDS 194
+TGD QI+ T LV T E + R S+ L +E V I DE+H ++D
Sbjct: 585 VAELTGDSRLSRKQIDET-QVLVSTPEKW-DITTRNSNNLAIVELVRLLIIDEIHLLHD- 641
Query: 195 ERGHVWEEVLIL----------LPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTL 244
+RG V E ++ P+ I+ LSAT+PN + ++ K+ Y S+
Sbjct: 642 DRGPVLESIVARTFWASKYGQEYPR---IIGLSATLPNYEDVGRFLRVPKEGLFYFDSSF 698
Query: 245 KRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNG 304
RP PL + G + E+N L L A C +++ + + G +
Sbjct: 699 -RPCPLSQ-QFCG-IKERNSL-------------KKLKAMNDACYEKVLESINEGNQ--- 739
Query: 305 PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
+++F SRK + A L F+ K+ +
Sbjct: 740 -------------------------IIVFVHSRKETSR-TATWLKNKFAEENITHKLTKN 773
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
S + L+ E L L +L+++GIG HH+G+ + + E LF GL++
Sbjct: 774 DAGSKQILKTEAANVLD--PSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQ 826
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 72 FELDVF---QKQAIIKLEEHNH-VFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTS 123
FE F Q Q L N VFV + GKT +AE A+ NH K R +Y +
Sbjct: 1343 FEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALL---NHWRQNKGRAVYIN 1399
Query: 124 PIKALSNQKYRDFRETFQD------VGLVTGDFQINT---TASCLVMTTEI---LRSMLY 171
P + D+ + F + + D +N S +++ T + L S +
Sbjct: 1400 PSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRW 1459
Query: 172 RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL-------ILLPKEVCIVMLSATVPNTL 224
R ++ LE +I+D+ H I+ G V+E ++ L K++ V LS + N
Sbjct: 1460 RQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANAR 1519
Query: 225 EFADWVGNTKKTKVYVVSTLKRPVPLK 251
+F +W G T K+ +Y S +R PL+
Sbjct: 1520 DFGEWAGMT-KSNIYNFSPSERIEPLE 1545
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,232,808
Number of Sequences: 539616
Number of extensions: 6334869
Number of successful extensions: 17776
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 17472
Number of HSP's gapped (non-prelim): 302
length of query: 419
length of database: 191,569,459
effective HSP length: 120
effective length of query: 299
effective length of database: 126,815,539
effective search space: 37917846161
effective search space used: 37917846161
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)