Query psy2764
Match_columns 419
No_of_seqs 248 out of 2371
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 6.9E-49 1.5E-53 348.1 15.7 314 41-417 58-393 (476)
2 KOG0331|consensus 100.0 1.1E-48 2.5E-53 368.6 16.9 314 43-417 90-434 (519)
3 KOG0947|consensus 100.0 1.1E-46 2.5E-51 365.7 29.1 371 43-419 267-658 (1248)
4 COG0513 SrmB Superfamily II DN 100.0 1.7E-45 3.7E-50 361.3 21.5 310 44-416 29-365 (513)
5 PTZ00110 helicase; Provisional 100.0 5E-45 1.1E-49 361.4 23.3 320 34-417 122-470 (545)
6 PRK04837 ATP-dependent RNA hel 100.0 5.6E-45 1.2E-49 353.7 22.4 312 41-417 5-348 (423)
7 KOG0335|consensus 100.0 3.2E-45 6.9E-50 339.5 18.7 343 10-418 41-431 (482)
8 PRK10590 ATP-dependent RNA hel 100.0 1E-44 2.2E-49 354.1 22.7 309 45-417 2-338 (456)
9 KOG0328|consensus 100.0 4.9E-46 1.1E-50 316.7 10.7 313 42-417 25-359 (400)
10 PRK11776 ATP-dependent RNA hel 100.0 4E-44 8.6E-49 351.4 23.7 309 44-417 4-335 (460)
11 KOG0948|consensus 100.0 1.4E-43 3.1E-48 336.5 26.0 350 65-419 121-474 (1041)
12 PRK04537 ATP-dependent RNA hel 100.0 3E-44 6.6E-49 357.0 22.3 310 43-417 8-350 (572)
13 PRK11634 ATP-dependent RNA hel 100.0 6.6E-44 1.4E-48 356.4 23.9 310 44-417 6-338 (629)
14 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-43 3.7E-48 349.6 25.0 320 31-417 110-461 (518)
15 PRK11192 ATP-dependent RNA hel 100.0 4.6E-43 1E-47 341.9 23.6 310 45-417 2-338 (434)
16 PRK01297 ATP-dependent RNA hel 100.0 3.2E-42 6.8E-47 338.8 25.0 311 43-417 86-428 (475)
17 KOG0338|consensus 100.0 8.5E-44 1.9E-48 325.3 12.2 310 45-414 182-516 (691)
18 KOG0342|consensus 100.0 3.5E-43 7.5E-48 320.8 16.0 310 47-417 84-423 (543)
19 KOG0333|consensus 100.0 1.4E-42 3.1E-47 318.4 17.3 324 27-416 230-609 (673)
20 KOG0345|consensus 100.0 2.8E-42 6.1E-47 312.9 18.3 297 43-401 3-328 (567)
21 KOG0326|consensus 100.0 1.4E-42 3.1E-47 300.4 11.9 308 44-417 85-415 (459)
22 PTZ00424 helicase 45; Provisio 100.0 2.2E-41 4.8E-46 327.7 21.6 312 43-417 27-360 (401)
23 KOG0343|consensus 100.0 6.3E-42 1.4E-46 315.9 16.6 307 44-414 69-405 (758)
24 KOG0340|consensus 100.0 5.2E-42 1.1E-46 301.0 13.5 313 43-414 6-344 (442)
25 COG4581 Superfamily II RNA hel 100.0 1.5E-39 3.3E-44 327.8 31.1 351 63-419 109-472 (1041)
26 PRK02362 ski2-like helicase; P 100.0 1.4E-40 3E-45 342.3 23.7 317 45-417 2-381 (737)
27 KOG0346|consensus 100.0 6.5E-41 1.4E-45 301.5 15.2 310 44-416 19-395 (569)
28 KOG0336|consensus 100.0 2.1E-40 4.4E-45 295.8 14.2 337 14-417 194-558 (629)
29 KOG0347|consensus 100.0 1.3E-40 2.8E-45 307.1 11.8 302 36-401 173-534 (731)
30 TIGR03817 DECH_helic helicase/ 100.0 1.3E-38 2.8E-43 324.4 25.0 316 51-417 20-372 (742)
31 PRK00254 ski2-like helicase; P 100.0 2.3E-38 4.9E-43 325.2 22.7 298 45-401 2-342 (720)
32 KOG0339|consensus 100.0 1E-38 2.2E-43 291.8 16.0 302 33-400 214-538 (731)
33 KOG0952|consensus 100.0 1.1E-38 2.5E-43 313.5 17.5 288 71-419 107-424 (1230)
34 KOG0341|consensus 100.0 1.6E-40 3.5E-45 294.6 3.5 322 30-418 158-515 (610)
35 KOG0332|consensus 100.0 9.4E-39 2E-43 282.2 12.0 296 43-401 89-401 (477)
36 PRK01172 ski2-like helicase; P 100.0 1.3E-37 2.8E-42 318.3 21.6 311 45-417 2-362 (674)
37 COG1204 Superfamily II helicas 100.0 1.9E-37 4.2E-42 312.6 22.3 300 73-419 31-342 (766)
38 KOG0348|consensus 100.0 4E-38 8.6E-43 289.8 15.1 330 41-413 133-536 (708)
39 TIGR00614 recQ_fam ATP-depende 100.0 3.8E-37 8.3E-42 301.7 21.5 280 74-417 12-319 (470)
40 PRK13767 ATP-dependent helicas 100.0 3.4E-37 7.4E-42 320.1 21.9 296 74-417 33-383 (876)
41 KOG4284|consensus 100.0 3.4E-38 7.3E-43 295.8 8.9 312 50-417 30-365 (980)
42 PLN03137 ATP-dependent DNA hel 100.0 1.3E-35 2.7E-40 301.5 22.9 285 70-417 456-773 (1195)
43 KOG0327|consensus 100.0 5.6E-37 1.2E-41 273.1 10.6 307 45-417 27-356 (397)
44 KOG0334|consensus 100.0 1.8E-36 3.9E-41 300.3 15.3 323 31-418 354-707 (997)
45 KOG0350|consensus 100.0 4.4E-36 9.5E-41 274.4 15.7 297 61-417 150-526 (620)
46 COG1201 Lhr Lhr-like helicases 100.0 6.9E-36 1.5E-40 297.5 18.5 293 74-417 23-347 (814)
47 PRK11057 ATP-dependent DNA hel 100.0 2.9E-35 6.2E-40 295.8 22.4 282 71-417 22-329 (607)
48 COG1202 Superfamily II helicas 100.0 1.5E-35 3.2E-40 275.2 18.2 286 50-401 199-511 (830)
49 TIGR01389 recQ ATP-dependent D 100.0 5.4E-35 1.2E-39 294.7 22.5 283 70-417 9-317 (591)
50 KOG0337|consensus 100.0 4.4E-36 9.5E-41 269.1 9.8 303 43-409 20-346 (529)
51 TIGR00580 mfd transcription-re 100.0 1.4E-33 3.1E-38 290.2 22.3 280 66-416 444-755 (926)
52 PRK09401 reverse gyrase; Revie 100.0 2.8E-33 6E-38 294.7 21.5 261 70-398 77-398 (1176)
53 KOG0344|consensus 100.0 4.2E-34 9.1E-39 267.4 13.5 307 50-417 141-481 (593)
54 PRK10689 transcription-repair 100.0 4.3E-33 9.4E-38 292.6 21.4 282 65-417 592-905 (1147)
55 PRK09751 putative ATP-dependen 100.0 5.9E-33 1.3E-37 293.2 20.0 289 93-417 1-370 (1490)
56 PRK10917 ATP-dependent DNA hel 100.0 1.8E-32 3.8E-37 278.5 20.4 279 68-417 256-575 (681)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-32 2.8E-37 275.7 18.5 292 72-417 14-376 (844)
58 PRK14701 reverse gyrase; Provi 100.0 6.9E-32 1.5E-36 289.8 20.8 260 71-398 77-400 (1638)
59 TIGR00643 recG ATP-dependent D 100.0 5.1E-32 1.1E-36 273.5 18.0 282 66-417 228-552 (630)
60 PHA02558 uvsW UvsW helicase; P 100.0 2.1E-31 4.5E-36 262.5 21.0 304 72-417 113-438 (501)
61 KOG0951|consensus 100.0 2E-31 4.3E-36 266.0 15.7 295 74-419 310-635 (1674)
62 TIGR01054 rgy reverse gyrase. 100.0 5.1E-31 1.1E-35 278.0 19.1 261 71-399 76-398 (1171)
63 COG1111 MPH1 ERCC4-like helica 100.0 3.7E-30 8E-35 237.5 20.8 334 73-417 15-468 (542)
64 KOG0349|consensus 100.0 2.7E-31 5.8E-36 239.2 7.5 282 116-417 286-601 (725)
65 PRK11664 ATP-dependent RNA hel 100.0 3.2E-29 6.9E-34 256.3 22.3 268 75-401 7-286 (812)
66 TIGR01587 cas3_core CRISPR-ass 100.0 8.3E-30 1.8E-34 242.9 16.2 273 90-417 1-318 (358)
67 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.5E-29 9.7E-34 254.6 22.2 268 75-401 4-283 (819)
68 KOG0329|consensus 100.0 5.8E-30 1.3E-34 215.7 12.7 281 40-417 38-341 (387)
69 COG1061 SSL2 DNA or RNA helica 100.0 4.7E-29 1E-33 241.1 20.5 318 68-413 31-371 (442)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 6.9E-29 1.5E-33 234.3 20.6 279 77-416 1-357 (357)
71 COG0514 RecQ Superfamily II DN 100.0 8.2E-30 1.8E-34 245.6 13.8 282 74-417 18-323 (590)
72 PHA02653 RNA helicase NPH-II; 100.0 3.6E-28 7.8E-33 242.4 21.1 286 75-418 166-502 (675)
73 COG1205 Distinct helicase fami 100.0 2.1E-27 4.5E-32 243.3 22.8 295 74-416 71-407 (851)
74 TIGR00603 rad25 DNA repair hel 100.0 1.1E-27 2.5E-32 237.9 20.0 300 71-417 253-586 (732)
75 KOG0354|consensus 100.0 1.5E-27 3.1E-32 232.8 19.9 162 62-224 51-225 (746)
76 PRK13766 Hef nuclease; Provisi 100.0 1.1E-26 2.4E-31 242.2 25.1 340 72-417 14-466 (773)
77 cd00268 DEADc DEAD-box helicas 99.9 9.3E-27 2E-31 204.0 15.3 173 46-225 1-189 (203)
78 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-25 2.7E-30 190.9 15.0 147 75-221 1-163 (169)
79 PRK05580 primosome assembly pr 99.9 4.2E-25 9E-30 223.9 19.6 145 70-221 141-305 (679)
80 PRK12898 secA preprotein trans 99.9 5.7E-25 1.2E-29 216.3 16.9 119 71-191 101-254 (656)
81 COG1200 RecG RecG-like helicas 99.9 1.9E-25 4.1E-30 215.0 11.8 267 65-402 254-555 (677)
82 COG4098 comFA Superfamily II D 99.9 4.3E-24 9.4E-29 187.9 18.8 285 73-417 97-400 (441)
83 PRK09694 helicase Cas3; Provis 99.9 2.3E-24 4.9E-29 220.3 19.1 305 71-417 284-661 (878)
84 TIGR00963 secA preprotein tran 99.9 1.2E-24 2.7E-29 215.1 16.2 120 71-192 54-189 (745)
85 PRK09200 preprotein translocas 99.9 5.1E-24 1.1E-28 214.0 18.5 119 71-191 76-211 (790)
86 TIGR03714 secA2 accessory Sec 99.9 8.7E-24 1.9E-28 210.4 18.5 118 74-191 69-207 (762)
87 KOG0351|consensus 99.9 1.9E-24 4.1E-29 220.3 13.3 282 74-417 265-578 (941)
88 KOG0950|consensus 99.9 6.5E-24 1.4E-28 209.1 16.3 305 74-419 224-550 (1008)
89 PRK11131 ATP-dependent RNA hel 99.9 7.3E-23 1.6E-27 213.6 24.3 266 74-401 75-358 (1294)
90 PRK11448 hsdR type I restricti 99.9 2.2E-23 4.9E-28 218.9 19.1 303 67-402 407-778 (1123)
91 KOG0352|consensus 99.9 4.5E-24 9.7E-29 192.5 9.0 267 75-401 22-326 (641)
92 TIGR00595 priA primosomal prot 99.9 4.6E-23 9.9E-28 201.9 15.1 122 92-221 1-140 (505)
93 KOG0353|consensus 99.9 3.6E-23 7.9E-28 184.1 11.7 268 74-401 95-388 (695)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.6E-21 3.5E-26 204.3 23.2 268 75-401 69-351 (1283)
95 COG1197 Mfd Transcription-repa 99.9 2.1E-21 4.5E-26 197.3 16.8 267 65-402 586-877 (1139)
96 PRK12904 preprotein translocas 99.9 1.3E-21 2.8E-26 196.2 14.9 119 71-191 79-213 (830)
97 PRK13104 secA preprotein trans 99.9 8.1E-21 1.8E-25 190.7 15.0 116 74-191 83-214 (896)
98 COG1110 Reverse gyrase [DNA re 99.8 5.9E-20 1.3E-24 182.4 17.0 261 69-399 78-406 (1187)
99 KOG0949|consensus 99.8 2.4E-19 5.3E-24 176.5 21.1 158 72-231 510-682 (1330)
100 COG4096 HsdR Type I site-speci 99.8 5.3E-20 1.1E-24 180.0 15.0 308 74-407 166-508 (875)
101 PRK04914 ATP-dependent helicas 99.8 1.8E-19 3.9E-24 185.8 19.4 338 73-417 152-589 (956)
102 smart00487 DEXDc DEAD-like hel 99.8 4.2E-19 9.2E-24 154.5 16.8 155 72-226 7-176 (201)
103 KOG0951|consensus 99.8 2.8E-19 6E-24 179.9 14.3 274 74-419 1144-1433(1674)
104 PF04851 ResIII: Type III rest 99.8 2.2E-18 4.9E-23 148.3 14.0 143 72-222 2-184 (184)
105 KOG1123|consensus 99.8 5.2E-20 1.1E-24 169.5 3.8 276 74-402 303-611 (776)
106 TIGR01407 dinG_rel DnaQ family 99.8 7.7E-18 1.7E-22 176.2 19.9 65 70-134 242-310 (850)
107 PRK12899 secA preprotein trans 99.8 4.6E-19 1E-23 178.0 10.2 145 48-192 65-228 (970)
108 TIGR00348 hsdR type I site-spe 99.8 7.1E-18 1.5E-22 171.2 18.4 146 74-223 239-405 (667)
109 COG1643 HrpA HrpA-like helicas 99.8 3.1E-17 6.6E-22 165.9 19.0 267 75-401 52-334 (845)
110 COG1198 PriA Primosomal protei 99.7 5.3E-17 1.2E-21 161.8 18.2 142 73-221 198-360 (730)
111 COG1203 CRISPR-associated heli 99.7 2.4E-17 5.3E-22 169.1 14.4 290 74-416 196-533 (733)
112 PRK13107 preprotein translocas 99.7 1.7E-17 3.6E-22 166.6 11.9 117 74-192 83-215 (908)
113 PRK12906 secA preprotein trans 99.7 4E-17 8.6E-22 163.6 14.4 120 70-191 77-212 (796)
114 cd00046 DEXDc DEAD-like helica 99.7 1.7E-16 3.8E-21 130.0 14.1 132 89-220 1-144 (144)
115 KOG0922|consensus 99.7 9.8E-16 2.1E-20 147.0 17.4 260 75-399 53-335 (674)
116 KOG0952|consensus 99.7 5.6E-18 1.2E-22 168.5 1.1 279 74-410 928-1230(1230)
117 KOG0920|consensus 99.6 3.3E-14 7.3E-19 143.7 23.0 296 75-400 175-490 (924)
118 COG0556 UvrB Helicase subunit 99.6 6.2E-15 1.4E-19 137.7 15.9 85 325-413 444-540 (663)
119 PRK07246 bifunctional ATP-depe 99.6 1.9E-14 4.2E-19 148.9 21.0 68 70-138 242-314 (820)
120 PF07652 Flavi_DEAD: Flaviviru 99.6 2E-14 4.3E-19 113.6 9.9 135 87-224 3-140 (148)
121 PRK08074 bifunctional ATP-depe 99.5 4.1E-13 9E-18 141.5 21.0 64 71-134 255-323 (928)
122 TIGR00631 uvrb excinuclease AB 99.5 3.6E-13 7.9E-18 135.6 19.4 89 325-417 440-540 (655)
123 PLN03142 Probable chromatin-re 99.5 6.2E-13 1.3E-17 138.4 20.7 336 73-417 169-586 (1033)
124 KOG0923|consensus 99.5 1E-13 2.2E-18 132.4 12.2 276 61-400 255-552 (902)
125 PRK12326 preprotein translocas 99.5 3.5E-13 7.6E-18 132.8 14.8 119 71-191 76-210 (764)
126 KOG0924|consensus 99.5 5.5E-13 1.2E-17 127.8 13.2 259 75-400 358-643 (1042)
127 PRK05298 excinuclease ABC subu 99.4 9.9E-12 2.1E-16 126.2 18.3 89 325-417 444-544 (652)
128 PRK13103 secA preprotein trans 99.4 2E-12 4.2E-17 130.7 11.3 116 74-191 83-214 (913)
129 COG1199 DinG Rad3-related DNA 99.4 1.1E-11 2.3E-16 127.6 16.7 70 70-139 12-86 (654)
130 KOG0926|consensus 99.4 1.6E-11 3.4E-16 119.9 16.0 214 80-350 263-504 (1172)
131 COG4889 Predicted helicase [Ge 99.4 7E-13 1.5E-17 130.2 6.7 150 69-221 157-351 (1518)
132 PRK12900 secA preprotein trans 99.3 6.8E-11 1.5E-15 120.2 15.3 105 308-417 577-697 (1025)
133 KOG4150|consensus 99.2 4.4E-11 9.6E-16 112.8 9.7 293 74-417 287-626 (1034)
134 CHL00122 secA preprotein trans 99.2 1E-10 2.3E-15 117.8 12.3 117 73-191 76-208 (870)
135 KOG0953|consensus 99.2 1.7E-11 3.7E-16 115.4 5.5 228 87-396 190-425 (700)
136 PF00176 SNF2_N: SNF2 family N 99.2 2.5E-10 5.5E-15 106.1 13.5 137 77-222 1-174 (299)
137 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.2E-10 4.7E-15 114.0 13.6 58 83-140 11-70 (636)
138 TIGR02562 cas3_yersinia CRISPR 99.2 1E-09 2.2E-14 112.4 16.2 150 75-225 410-639 (1110)
139 PRK12902 secA preprotein trans 99.1 1.3E-09 2.8E-14 110.0 15.3 117 73-191 85-217 (939)
140 PRK12903 secA preprotein trans 99.1 1.7E-09 3.7E-14 108.7 15.2 118 72-191 77-210 (925)
141 KOG0925|consensus 99.1 7.3E-09 1.6E-13 96.5 17.6 262 75-398 49-331 (699)
142 PF02399 Herpes_ori_bp: Origin 99.1 1.4E-09 2.9E-14 108.7 12.3 280 87-397 48-343 (824)
143 KOG0385|consensus 99.0 1.9E-08 4.2E-13 98.5 16.4 143 72-220 166-327 (971)
144 KOG0387|consensus 99.0 1.4E-08 3E-13 99.9 15.1 334 74-417 206-645 (923)
145 PRK11747 dinG ATP-dependent DN 98.9 1.1E-08 2.4E-13 105.0 13.4 63 72-134 24-96 (697)
146 KOG1000|consensus 98.9 4.1E-08 8.9E-13 91.7 14.4 143 74-221 199-349 (689)
147 PRK14873 primosome assembly pr 98.9 4.3E-09 9.3E-14 106.2 7.6 125 92-223 164-306 (665)
148 smart00489 DEXDc3 DEAD-like he 98.9 8.7E-09 1.9E-13 94.5 9.0 73 68-140 3-85 (289)
149 smart00488 DEXDc2 DEAD-like he 98.9 8.7E-09 1.9E-13 94.5 9.0 73 68-140 3-85 (289)
150 PF13086 AAA_11: AAA domain; P 98.8 2.7E-08 5.8E-13 88.9 11.1 65 74-138 2-75 (236)
151 PF13604 AAA_30: AAA domain; P 98.8 3.8E-08 8.3E-13 85.0 10.8 121 74-218 2-129 (196)
152 KOG0384|consensus 98.7 1.9E-07 4.1E-12 96.1 12.3 318 72-400 369-772 (1373)
153 COG0610 Type I site-specific r 98.6 5.3E-07 1.1E-11 95.3 15.0 130 89-222 274-415 (962)
154 PRK15483 type III restriction- 98.6 5E-07 1.1E-11 93.3 14.2 130 89-222 60-240 (986)
155 PF07517 SecA_DEAD: SecA DEAD- 98.6 3.3E-07 7.2E-12 81.9 11.1 125 69-195 73-214 (266)
156 KOG1803|consensus 98.5 3.7E-07 8.1E-12 87.8 8.8 67 71-137 183-250 (649)
157 PF02562 PhoH: PhoH-like prote 98.5 9.1E-07 2E-11 75.9 9.9 123 74-218 5-154 (205)
158 PF06862 DUF1253: Protein of u 98.5 3.9E-06 8.4E-11 80.0 14.8 234 116-389 37-359 (442)
159 KOG0392|consensus 98.5 1.4E-06 3E-11 89.8 12.2 153 63-221 963-1139(1549)
160 PF09848 DUF2075: Uncharacteri 98.5 1E-06 2.2E-11 83.7 10.3 94 89-193 2-97 (352)
161 KOG0390|consensus 98.4 3.1E-06 6.8E-11 85.3 13.7 142 74-221 239-415 (776)
162 TIGR01447 recD exodeoxyribonuc 98.4 3.1E-06 6.8E-11 84.8 13.7 137 75-218 147-294 (586)
163 TIGR01448 recD_rel helicase, p 98.4 2.9E-06 6.2E-11 87.5 13.8 126 70-219 320-452 (720)
164 PRK10875 recD exonuclease V su 98.4 3.7E-06 8E-11 84.5 13.2 138 75-219 154-301 (615)
165 PRK10536 hypothetical protein; 98.4 7.6E-06 1.7E-10 72.3 13.2 133 74-217 60-210 (262)
166 cd00079 HELICc Helicase superf 98.3 2.8E-07 6E-12 74.1 2.7 84 314-401 13-99 (131)
167 PF13245 AAA_19: Part of AAA d 98.3 2.3E-06 4.9E-11 61.3 6.9 51 86-136 8-62 (76)
168 PF13872 AAA_34: P-loop contai 98.3 1.4E-05 3.1E-10 71.8 13.2 148 74-222 38-222 (303)
169 TIGR02768 TraA_Ti Ti-type conj 98.3 1.5E-05 3.2E-10 82.7 14.3 123 71-217 350-474 (744)
170 KOG1802|consensus 98.2 6.6E-06 1.4E-10 80.0 9.6 68 74-141 411-479 (935)
171 PF12340 DUF3638: Protein of u 98.2 1.1E-05 2.4E-10 69.9 8.8 122 71-193 21-186 (229)
172 PRK13889 conjugal transfer rel 98.1 3.5E-05 7.5E-10 81.2 13.9 125 71-219 344-470 (988)
173 TIGR00604 rad3 DNA repair heli 98.1 8E-06 1.7E-10 84.7 8.6 72 68-139 4-83 (705)
174 KOG1002|consensus 98.1 1.8E-05 4E-10 74.4 9.9 143 74-221 185-355 (791)
175 KOG0389|consensus 98.1 1.4E-05 2.9E-10 79.4 9.1 145 72-220 398-562 (941)
176 PRK13826 Dtr system oriT relax 98.0 0.0001 2.2E-09 78.3 14.4 125 71-219 379-505 (1102)
177 KOG1132|consensus 98.0 4.5E-05 9.7E-10 76.8 10.8 75 66-140 14-134 (945)
178 PRK06526 transposase; Provisio 98.0 4.3E-05 9.3E-10 68.6 9.7 107 85-221 95-202 (254)
179 PF13401 AAA_22: AAA domain; P 98.0 1.9E-05 4.1E-10 63.5 6.3 116 87-220 3-125 (131)
180 cd00009 AAA The AAA+ (ATPases 97.9 0.00014 3.1E-09 59.2 11.3 39 88-126 19-57 (151)
181 PRK08181 transposase; Validate 97.9 0.00021 4.5E-09 64.6 13.0 116 74-220 88-208 (269)
182 KOG4439|consensus 97.9 2.2E-05 4.8E-10 76.9 6.9 158 72-233 324-519 (901)
183 PRK04296 thymidine kinase; Pro 97.9 4.5E-05 9.8E-10 65.6 7.6 87 88-192 2-91 (190)
184 COG0653 SecA Preprotein transl 97.9 0.00022 4.7E-09 72.7 13.2 117 75-191 80-212 (822)
185 TIGR00376 DNA helicase, putati 97.9 4.9E-05 1.1E-09 77.4 8.7 66 74-139 158-224 (637)
186 smart00382 AAA ATPases associa 97.8 7.1E-05 1.5E-09 60.5 7.8 46 88-133 2-47 (148)
187 PF00580 UvrD-helicase: UvrD/R 97.7 8.1E-05 1.8E-09 69.5 7.3 114 74-189 1-125 (315)
188 PF05970 PIF1: PIF1-like helic 97.7 0.00017 3.6E-09 68.8 9.2 107 74-193 2-116 (364)
189 PRK07952 DNA replication prote 97.7 0.0011 2.3E-08 59.1 13.2 117 75-220 78-204 (244)
190 KOG0391|consensus 97.6 0.00029 6.3E-09 73.0 9.4 142 73-220 615-775 (1958)
191 PRK12723 flagellar biosynthesi 97.6 0.0014 3.1E-08 62.3 13.3 117 88-221 174-298 (388)
192 KOG1805|consensus 97.6 0.00025 5.4E-09 72.3 8.5 115 74-192 670-809 (1100)
193 TIGR02760 TraI_TIGR conjugativ 97.6 0.0011 2.4E-08 75.6 14.4 137 71-219 427-566 (1960)
194 KOG2340|consensus 97.6 0.00033 7.2E-09 66.8 8.5 133 74-207 217-442 (698)
195 KOG1131|consensus 97.6 0.00084 1.8E-08 64.0 11.0 72 69-140 11-91 (755)
196 PF00271 Helicase_C: Helicase 97.6 5.9E-06 1.3E-10 59.8 -2.5 69 345-417 1-76 (78)
197 COG3587 Restriction endonuclea 97.5 0.0003 6.4E-09 70.9 8.4 132 89-224 75-246 (985)
198 PRK09183 transposase/IS protei 97.5 0.0017 3.6E-08 58.8 12.7 71 61-132 72-145 (259)
199 PRK11889 flhF flagellar biosyn 97.5 0.0041 8.9E-08 58.7 14.7 116 89-222 242-364 (436)
200 COG1875 NYN ribonuclease and A 97.5 0.00079 1.7E-08 61.8 9.6 133 70-217 224-385 (436)
201 PHA02533 17 large terminase pr 97.5 0.00079 1.7E-08 67.0 10.5 142 69-219 55-209 (534)
202 PRK05642 DNA replication initi 97.5 0.00079 1.7E-08 60.0 9.6 94 89-221 46-140 (234)
203 PRK08727 hypothetical protein; 97.5 0.00088 1.9E-08 59.6 9.7 35 89-123 42-76 (233)
204 PRK14974 cell division protein 97.4 0.0032 7E-08 58.8 13.5 122 89-223 141-267 (336)
205 PRK12377 putative replication 97.4 0.0022 4.8E-08 57.3 11.8 75 88-191 101-175 (248)
206 PRK06921 hypothetical protein; 97.4 0.0014 3.1E-08 59.4 10.5 47 87-134 116-163 (266)
207 KOG0386|consensus 97.4 0.00015 3.1E-09 74.1 4.3 141 73-220 394-554 (1157)
208 KOG0921|consensus 97.4 0.00054 1.2E-08 69.3 8.0 148 81-234 386-548 (1282)
209 PRK06893 DNA replication initi 97.3 0.0011 2.3E-08 59.0 8.6 95 88-221 39-135 (229)
210 PRK08116 hypothetical protein; 97.3 0.003 6.4E-08 57.4 11.7 47 89-136 115-161 (268)
211 COG1484 DnaC DNA replication p 97.3 0.0016 3.5E-08 58.6 9.6 90 75-193 85-181 (254)
212 cd01124 KaiC KaiC is a circadi 97.3 0.00052 1.1E-08 58.8 6.1 49 91-140 2-50 (187)
213 PRK12901 secA preprotein trans 97.3 0.00034 7.3E-09 72.6 5.5 126 66-191 160-302 (1112)
214 PRK05703 flhF flagellar biosyn 97.3 0.01 2.2E-07 57.6 15.3 118 88-222 221-344 (424)
215 COG2256 MGS1 ATPase related to 97.3 0.0019 4E-08 60.2 9.6 96 89-224 49-144 (436)
216 PRK12402 replication factor C 97.3 0.0028 6.2E-08 59.8 11.2 29 85-113 31-61 (337)
217 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.0019 4.2E-08 57.1 9.4 36 87-122 37-72 (226)
218 PRK08903 DnaA regulatory inact 97.2 0.0021 4.5E-08 57.0 9.5 38 87-124 41-78 (227)
219 TIGR03015 pepcterm_ATPase puta 97.2 0.0032 6.9E-08 57.4 11.0 37 75-111 25-66 (269)
220 COG1419 FlhF Flagellar GTP-bin 97.2 0.013 2.9E-07 55.1 14.7 123 87-228 202-330 (407)
221 PRK06835 DNA replication prote 97.2 0.0052 1.1E-07 57.4 12.0 60 74-134 161-228 (329)
222 PRK08084 DNA replication initi 97.2 0.0019 4.1E-08 57.6 8.7 38 87-124 44-81 (235)
223 KOG0989|consensus 97.2 0.0017 3.7E-08 58.2 8.0 46 175-221 125-170 (346)
224 PRK14722 flhF flagellar biosyn 97.2 0.0018 4E-08 61.1 8.6 118 87-224 136-261 (374)
225 KOG1133|consensus 97.1 0.0007 1.5E-08 66.7 5.6 45 66-110 8-56 (821)
226 PRK10919 ATP-dependent DNA hel 97.1 0.0023 5.1E-08 66.0 9.3 84 74-169 3-90 (672)
227 cd01120 RecA-like_NTPases RecA 97.1 0.0037 8E-08 51.9 9.0 39 91-129 2-40 (165)
228 PF00448 SRP54: SRP54-type pro 97.1 0.0031 6.7E-08 54.4 8.6 123 90-224 3-129 (196)
229 PRK14712 conjugal transfer nic 97.1 0.0054 1.2E-07 67.7 12.2 122 73-219 835-967 (1623)
230 PRK11054 helD DNA helicase IV; 97.1 0.0035 7.5E-08 64.5 10.1 80 73-167 196-279 (684)
231 PRK00149 dnaA chromosomal repl 97.1 0.0048 1E-07 60.8 10.7 101 89-220 149-253 (450)
232 PF00004 AAA: ATPase family as 97.0 0.01 2.2E-07 47.3 10.9 32 91-125 1-32 (132)
233 COG1444 Predicted P-loop ATPas 97.0 0.014 2.9E-07 59.6 13.7 131 75-223 213-359 (758)
234 PRK13709 conjugal transfer nic 97.0 0.0096 2.1E-07 66.7 13.5 123 72-219 966-1099(1747)
235 TIGR02760 TraI_TIGR conjugativ 96.9 0.0098 2.1E-07 68.2 13.1 121 72-217 1018-1147(1960)
236 COG3421 Uncharacterized protei 96.9 0.0027 5.8E-08 61.8 7.3 136 93-228 2-173 (812)
237 KOG0388|consensus 96.9 0.0012 2.6E-08 65.2 5.1 139 74-221 568-734 (1185)
238 PRK08939 primosomal protein Dn 96.9 0.0086 1.9E-07 55.4 10.6 103 87-220 155-260 (306)
239 PRK00411 cdc6 cell division co 96.9 0.006 1.3E-07 59.0 10.1 34 89-122 56-91 (394)
240 PRK11773 uvrD DNA-dependent he 96.9 0.0047 1E-07 64.5 9.6 83 74-169 10-96 (721)
241 PRK08533 flagellar accessory p 96.9 0.011 2.3E-07 52.5 10.3 54 86-140 22-75 (230)
242 PRK04195 replication factor C 96.8 0.0095 2.1E-07 59.2 10.8 22 88-109 39-60 (482)
243 TIGR01075 uvrD DNA helicase II 96.8 0.005 1.1E-07 64.3 9.1 83 74-169 5-91 (715)
244 TIGR00362 DnaA chromosomal rep 96.8 0.011 2.4E-07 57.4 10.9 101 89-220 137-241 (405)
245 PHA03333 putative ATPase subun 96.8 0.021 4.5E-07 57.4 12.7 143 74-220 170-332 (752)
246 PTZ00112 origin recognition co 96.8 0.016 3.5E-07 59.9 12.0 120 75-206 760-895 (1164)
247 TIGR02881 spore_V_K stage V sp 96.8 0.012 2.6E-07 53.4 10.4 24 88-111 42-65 (261)
248 PF00308 Bac_DnaA: Bacterial d 96.8 0.015 3.3E-07 51.1 10.7 105 90-224 36-144 (219)
249 PRK12422 chromosomal replicati 96.8 0.0099 2.1E-07 58.1 10.2 105 89-223 142-248 (445)
250 PF05127 Helicase_RecD: Helica 96.8 0.0018 3.8E-08 54.4 4.3 116 92-224 1-127 (177)
251 PRK06731 flhF flagellar biosyn 96.8 0.05 1.1E-06 49.2 13.9 119 87-221 74-197 (270)
252 TIGR01074 rep ATP-dependent DN 96.7 0.0086 1.9E-07 62.2 9.8 85 74-170 2-90 (664)
253 COG1474 CDC6 Cdc6-related prot 96.7 0.0078 1.7E-07 57.1 8.6 106 89-208 43-151 (366)
254 smart00490 HELICc helicase sup 96.7 0.0002 4.3E-09 51.9 -1.8 71 342-416 2-79 (82)
255 KOG2028|consensus 96.6 0.0036 7.9E-08 57.5 5.6 100 89-224 163-262 (554)
256 PF06745 KaiC: KaiC; InterPro 96.6 0.0062 1.4E-07 54.0 7.1 129 87-220 18-160 (226)
257 PRK00771 signal recognition pa 96.6 0.014 3.1E-07 56.5 10.0 120 89-222 96-219 (437)
258 CHL00181 cbbX CbbX; Provisiona 96.6 0.012 2.7E-07 53.9 9.1 25 88-112 59-83 (287)
259 PRK14087 dnaA chromosomal repl 96.6 0.011 2.5E-07 57.8 9.1 105 89-221 142-250 (450)
260 TIGR00064 ftsY signal recognit 96.6 0.038 8.3E-07 50.3 12.0 122 88-221 72-203 (272)
261 TIGR03499 FlhF flagellar biosy 96.6 0.018 3.8E-07 52.9 9.8 84 88-188 194-281 (282)
262 PF13173 AAA_14: AAA domain 96.6 0.034 7.3E-07 44.3 10.3 38 179-219 61-98 (128)
263 PLN03025 replication factor C 96.6 0.034 7.4E-07 52.1 11.9 24 89-112 35-58 (319)
264 PF01695 IstB_IS21: IstB-like 96.6 0.0062 1.3E-07 51.7 6.2 47 86-133 45-91 (178)
265 PRK09112 DNA polymerase III su 96.5 0.0093 2E-07 56.3 7.9 127 85-217 39-178 (351)
266 TIGR01073 pcrA ATP-dependent D 96.5 0.012 2.6E-07 61.7 9.5 83 74-169 5-91 (726)
267 cd01122 GP4d_helicase GP4d_hel 96.5 0.0099 2.1E-07 54.3 7.7 74 61-139 6-81 (271)
268 PHA02544 44 clamp loader, smal 96.5 0.014 3.1E-07 54.5 9.0 39 179-217 100-138 (316)
269 PRK12726 flagellar biosynthesi 96.5 0.041 9E-07 51.9 11.7 118 87-220 205-327 (407)
270 PRK05973 replicative DNA helic 96.5 0.04 8.7E-07 48.8 11.0 55 85-140 61-115 (237)
271 PRK12724 flagellar biosynthesi 96.5 0.084 1.8E-06 50.6 13.8 117 89-223 224-347 (432)
272 PF05496 RuvB_N: Holliday junc 96.5 0.009 2E-07 51.8 6.6 19 89-107 51-69 (233)
273 PRK07003 DNA polymerase III su 96.4 0.017 3.8E-07 58.9 9.5 24 90-113 40-63 (830)
274 PRK11823 DNA repair protein Ra 96.4 0.016 3.4E-07 56.8 9.0 89 87-193 79-170 (446)
275 PRK12899 secA preprotein trans 96.4 0.014 3.1E-07 60.7 8.9 79 315-398 554-634 (970)
276 PF03354 Terminase_1: Phage Te 96.4 0.012 2.6E-07 58.3 8.3 139 76-217 1-160 (477)
277 KOG2228|consensus 96.4 0.055 1.2E-06 49.5 11.4 122 87-221 48-182 (408)
278 KOG0991|consensus 96.4 0.0057 1.2E-07 52.8 5.0 37 178-215 112-148 (333)
279 PRK14088 dnaA chromosomal repl 96.4 0.028 6E-07 55.0 10.5 103 89-220 131-237 (440)
280 PRK05707 DNA polymerase III su 96.4 0.026 5.6E-07 52.8 9.9 40 75-114 5-48 (328)
281 COG4626 Phage terminase-like p 96.4 0.034 7.3E-07 54.4 10.7 146 69-218 57-223 (546)
282 PHA03368 DNA packaging termina 96.4 0.055 1.2E-06 54.3 12.2 124 87-221 253-391 (738)
283 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.033 7.2E-07 49.7 10.1 53 87-140 20-72 (237)
284 TIGR02928 orc1/cdc6 family rep 96.4 0.057 1.2E-06 51.6 12.4 24 89-112 41-64 (365)
285 TIGR02880 cbbX_cfxQ probable R 96.3 0.021 4.6E-07 52.4 8.9 25 88-112 58-82 (284)
286 PRK13833 conjugal transfer pro 96.3 0.01 2.3E-07 55.1 6.9 56 74-129 129-187 (323)
287 TIGR02782 TrbB_P P-type conjug 96.3 0.013 2.7E-07 54.2 7.4 94 74-189 117-214 (299)
288 COG0553 HepA Superfamily II DN 96.3 0.0099 2.2E-07 63.8 7.7 144 73-220 338-510 (866)
289 TIGR00767 rho transcription te 96.3 0.0041 8.8E-08 58.9 3.9 26 86-111 166-191 (415)
290 PRK13342 recombination factor 96.3 0.027 5.9E-07 54.8 9.7 40 179-223 92-131 (413)
291 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.041 9E-07 48.8 10.0 53 87-140 19-71 (229)
292 COG2909 MalT ATP-dependent tra 96.2 0.019 4.1E-07 58.6 8.4 134 86-222 35-172 (894)
293 PRK08691 DNA polymerase III su 96.2 0.016 3.4E-07 58.8 7.9 24 90-113 40-63 (709)
294 PRK13894 conjugal transfer ATP 96.2 0.012 2.7E-07 54.7 6.6 56 74-129 133-191 (319)
295 PRK12727 flagellar biosynthesi 96.2 0.1 2.3E-06 51.4 12.9 117 87-221 349-470 (559)
296 PRK14956 DNA polymerase III su 96.2 0.014 3E-07 56.9 6.8 24 90-113 42-65 (484)
297 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.026 5.6E-07 46.6 7.4 130 90-224 4-142 (159)
298 PRK14958 DNA polymerase III su 96.1 0.018 4E-07 57.2 7.7 24 90-113 40-63 (509)
299 PRK06067 flagellar accessory p 96.1 0.054 1.2E-06 48.2 10.1 53 87-140 24-76 (234)
300 PRK05986 cob(I)alamin adenolsy 96.1 0.024 5.2E-07 48.1 7.3 136 86-223 20-161 (191)
301 PRK10416 signal recognition pa 96.1 0.11 2.4E-06 48.4 12.3 123 88-222 114-246 (318)
302 PRK14086 dnaA chromosomal repl 96.1 0.06 1.3E-06 54.1 11.0 104 90-223 316-423 (617)
303 PRK14949 DNA polymerase III su 96.1 0.024 5.2E-07 59.1 8.4 23 90-112 40-62 (944)
304 PF05621 TniB: Bacterial TniB 96.1 0.035 7.6E-07 50.5 8.5 128 75-216 39-186 (302)
305 TIGR01547 phage_term_2 phage t 96.1 0.071 1.5E-06 51.6 11.4 127 89-224 2-144 (396)
306 KOG0058|consensus 96.1 0.015 3.3E-07 58.4 6.7 36 176-211 619-654 (716)
307 COG0470 HolB ATPase involved i 96.1 0.031 6.8E-07 52.4 8.8 40 177-217 107-146 (325)
308 PRK14960 DNA polymerase III su 96.0 0.018 3.8E-07 58.1 7.2 25 89-113 38-62 (702)
309 cd01121 Sms Sms (bacterial rad 96.0 0.048 1E-06 51.9 9.8 88 87-192 81-171 (372)
310 PF14617 CMS1: U3-containing 9 96.0 0.014 3E-07 51.9 5.7 75 115-189 125-211 (252)
311 PF13177 DNA_pol3_delta2: DNA 96.0 0.02 4.3E-07 47.8 6.3 121 90-221 21-143 (162)
312 PRK14957 DNA polymerase III su 96.0 0.061 1.3E-06 53.7 10.6 24 90-113 40-63 (546)
313 PRK12323 DNA polymerase III su 96.0 0.028 6E-07 56.6 8.1 25 90-114 40-64 (700)
314 PRK07994 DNA polymerase III su 95.9 0.026 5.6E-07 57.3 7.9 22 91-112 41-62 (647)
315 PRK13341 recombination factor 95.9 0.029 6.3E-07 58.1 8.4 41 179-224 109-149 (725)
316 PRK00440 rfc replication facto 95.9 0.13 2.8E-06 48.0 12.4 38 179-217 102-139 (319)
317 PRK14964 DNA polymerase III su 95.9 0.04 8.7E-07 54.2 9.0 24 89-112 36-59 (491)
318 TIGR03689 pup_AAA proteasome A 95.9 0.027 5.9E-07 55.6 7.8 62 40-110 175-238 (512)
319 TIGR02688 conserved hypothetic 95.9 0.038 8.3E-07 52.7 8.5 25 83-107 204-228 (449)
320 PF02456 Adeno_IVa2: Adenoviru 95.9 0.0061 1.3E-07 54.8 2.8 49 90-138 89-139 (369)
321 TIGR01425 SRP54_euk signal rec 95.9 0.18 4E-06 48.6 13.0 131 89-231 101-236 (429)
322 PRK14952 DNA polymerase III su 95.9 0.068 1.5E-06 53.9 10.5 23 91-113 38-60 (584)
323 PRK08769 DNA polymerase III su 95.9 0.052 1.1E-06 50.5 9.0 137 74-219 5-152 (319)
324 PRK13851 type IV secretion sys 95.8 0.017 3.6E-07 54.3 5.8 44 85-129 159-202 (344)
325 cd00984 DnaB_C DnaB helicase C 95.8 0.032 7E-07 49.9 7.5 38 86-123 11-49 (242)
326 PRK07764 DNA polymerase III su 95.8 0.03 6.5E-07 58.8 8.0 39 178-217 119-157 (824)
327 PRK14723 flhF flagellar biosyn 95.8 0.059 1.3E-06 55.6 9.9 117 88-221 185-306 (767)
328 PRK06620 hypothetical protein; 95.7 0.039 8.5E-07 48.3 7.3 16 89-104 45-60 (214)
329 PF05729 NACHT: NACHT domain 95.7 0.083 1.8E-06 43.8 9.0 42 90-131 2-48 (166)
330 TIGR02785 addA_Gpos recombinat 95.7 0.034 7.4E-07 61.5 8.3 65 74-140 2-69 (1232)
331 COG1435 Tdk Thymidine kinase [ 95.7 0.17 3.6E-06 42.8 10.4 112 88-215 4-115 (201)
332 PRK14961 DNA polymerase III su 95.7 0.07 1.5E-06 50.9 9.4 23 90-112 40-62 (363)
333 PRK12901 secA preprotein trans 95.6 0.029 6.4E-07 58.8 7.0 78 315-397 614-693 (1112)
334 PRK05896 DNA polymerase III su 95.6 0.025 5.4E-07 56.7 6.3 26 89-114 39-64 (605)
335 TIGR00678 holB DNA polymerase 95.6 0.12 2.6E-06 44.2 9.9 25 89-113 15-39 (188)
336 PRK14962 DNA polymerase III su 95.6 0.042 9.2E-07 54.1 7.8 23 90-112 38-60 (472)
337 PRK14963 DNA polymerase III su 95.6 0.065 1.4E-06 53.2 9.0 23 91-113 39-61 (504)
338 PRK04841 transcriptional regul 95.6 0.076 1.7E-06 57.4 10.4 44 178-221 120-163 (903)
339 PRK11747 dinG ATP-dependent DN 95.6 0.039 8.4E-07 57.3 7.7 77 315-400 524-605 (697)
340 PRK06645 DNA polymerase III su 95.6 0.12 2.7E-06 51.2 10.8 25 89-113 44-68 (507)
341 KOG0739|consensus 95.6 0.17 3.8E-06 45.5 10.5 105 83-219 156-276 (439)
342 COG0593 DnaA ATPase involved i 95.6 0.067 1.4E-06 51.0 8.6 106 88-224 113-222 (408)
343 COG4962 CpaF Flp pilus assembl 95.6 0.032 6.9E-07 51.4 6.2 58 74-132 158-216 (355)
344 KOG0745|consensus 95.6 0.018 3.9E-07 54.3 4.6 36 87-124 225-260 (564)
345 PRK09376 rho transcription ter 95.5 0.013 2.7E-07 55.4 3.6 54 86-139 167-221 (416)
346 cd01130 VirB11-like_ATPase Typ 95.5 0.038 8.1E-07 47.3 6.3 53 74-127 10-63 (186)
347 PRK06871 DNA polymerase III su 95.5 0.16 3.5E-06 47.3 10.8 38 77-114 10-50 (325)
348 PHA00729 NTP-binding motif con 95.5 0.043 9.4E-07 48.0 6.6 20 89-108 18-37 (226)
349 PRK13531 regulatory ATPase Rav 95.4 0.072 1.6E-06 51.9 8.4 27 83-109 34-60 (498)
350 cd01129 PulE-GspE PulE/GspE Th 95.4 0.039 8.4E-07 50.0 6.3 53 75-127 65-119 (264)
351 PRK07471 DNA polymerase III su 95.4 0.09 1.9E-06 50.0 9.0 125 90-220 43-181 (365)
352 PRK07940 DNA polymerase III su 95.4 0.16 3.6E-06 48.7 10.7 24 89-112 37-60 (394)
353 PRK10867 signal recognition pa 95.3 0.23 4.9E-06 48.3 11.5 121 89-221 101-226 (433)
354 PRK13900 type IV secretion sys 95.3 0.026 5.6E-07 52.9 5.0 45 85-130 157-201 (332)
355 PRK09111 DNA polymerase III su 95.3 0.11 2.3E-06 52.8 9.5 24 90-113 48-71 (598)
356 PRK14951 DNA polymerase III su 95.2 0.083 1.8E-06 53.6 8.6 24 90-113 40-63 (618)
357 COG1219 ClpX ATP-dependent pro 95.2 0.016 3.5E-07 52.4 3.1 27 86-112 95-121 (408)
358 PRK14969 DNA polymerase III su 95.2 0.11 2.4E-06 52.0 9.4 23 90-112 40-62 (527)
359 PF05876 Terminase_GpA: Phage 95.2 0.13 2.8E-06 51.9 9.8 115 73-193 16-148 (557)
360 PRK11331 5-methylcytosine-spec 95.2 0.079 1.7E-06 51.2 7.8 35 75-109 181-215 (459)
361 PTZ00293 thymidine kinase; Pro 95.1 0.17 3.6E-06 43.9 9.0 86 88-191 4-89 (211)
362 PF01637 Arch_ATPase: Archaeal 95.1 0.03 6.5E-07 49.5 4.7 37 88-124 20-56 (234)
363 COG2804 PulE Type II secretory 95.1 0.053 1.2E-06 52.6 6.5 37 75-112 243-281 (500)
364 TIGR00416 sms DNA repair prote 95.1 0.23 4.9E-06 48.8 11.1 91 87-192 93-183 (454)
365 KOG0298|consensus 95.1 0.097 2.1E-06 55.7 8.8 142 87-232 373-566 (1394)
366 PF00437 T2SE: Type II/IV secr 95.1 0.028 6.1E-07 51.3 4.4 52 77-128 115-167 (270)
367 PRK06964 DNA polymerase III su 95.1 0.18 4E-06 47.3 9.8 39 76-114 4-47 (342)
368 PRK14965 DNA polymerase III su 95.0 0.072 1.6E-06 54.0 7.4 24 90-113 40-63 (576)
369 TIGR00708 cobA cob(I)alamin ad 95.0 0.089 1.9E-06 44.0 6.6 130 89-223 6-143 (173)
370 PRK14955 DNA polymerase III su 94.9 0.14 3E-06 49.5 9.0 24 90-113 40-63 (397)
371 PRK14959 DNA polymerase III su 94.9 0.094 2E-06 53.0 7.9 25 89-113 39-63 (624)
372 PRK10436 hypothetical protein; 94.9 0.07 1.5E-06 52.3 6.9 52 75-126 203-256 (462)
373 PRK14948 DNA polymerase III su 94.9 0.16 3.5E-06 51.8 9.6 25 89-113 39-63 (620)
374 PRK08699 DNA polymerase III su 94.9 0.29 6.3E-06 45.8 10.6 38 76-113 4-46 (325)
375 TIGR00596 rad1 DNA repair prot 94.9 0.048 1E-06 57.0 5.8 68 155-222 7-74 (814)
376 COG3973 Superfamily I DNA and 94.9 0.096 2.1E-06 51.6 7.4 57 86-142 224-286 (747)
377 PRK10865 protein disaggregatio 94.8 0.18 3.9E-06 53.7 10.2 25 87-111 198-222 (857)
378 TIGR00959 ffh signal recogniti 94.8 0.4 8.7E-06 46.5 11.7 121 89-221 100-225 (428)
379 PRK06995 flhF flagellar biosyn 94.8 0.98 2.1E-05 44.5 14.2 116 87-222 255-378 (484)
380 cd00544 CobU Adenosylcobinamid 94.7 0.23 4.9E-06 41.7 8.6 83 91-190 2-84 (169)
381 PRK14721 flhF flagellar biosyn 94.7 0.73 1.6E-05 44.6 13.0 119 87-222 190-313 (420)
382 PRK06090 DNA polymerase III su 94.7 0.32 6.9E-06 45.3 10.3 40 75-114 5-51 (319)
383 PF01443 Viral_helicase1: Vira 94.7 0.018 4E-07 51.1 2.1 15 178-192 61-75 (234)
384 PRK11034 clpA ATP-dependent Cl 94.7 0.32 6.9E-06 50.8 11.3 23 87-109 206-228 (758)
385 cd01128 rho_factor Transcripti 94.7 0.023 4.9E-07 50.9 2.6 21 85-105 13-33 (249)
386 TIGR00604 rad3 DNA repair heli 94.6 0.031 6.7E-07 58.4 3.9 82 316-399 512-603 (705)
387 COG1702 PhoH Phosphate starvat 94.6 0.083 1.8E-06 48.6 6.0 67 74-151 129-197 (348)
388 PRK04328 hypothetical protein; 94.5 0.082 1.8E-06 47.6 5.9 53 87-140 22-74 (249)
389 PRK05563 DNA polymerase III su 94.5 0.24 5.2E-06 50.1 9.7 24 89-112 39-62 (559)
390 cd01126 TraG_VirD4 The TraG/Tr 94.5 0.028 6.1E-07 54.1 3.0 51 90-142 1-51 (384)
391 PF12846 AAA_10: AAA-like doma 94.5 0.061 1.3E-06 49.7 5.2 43 88-130 1-43 (304)
392 PRK08506 replicative DNA helic 94.4 0.32 7E-06 48.1 10.2 132 85-217 189-349 (472)
393 PRK08451 DNA polymerase III su 94.4 0.24 5.1E-06 49.4 9.2 40 177-217 115-154 (535)
394 COG0552 FtsY Signal recognitio 94.4 0.83 1.8E-05 42.1 11.9 131 90-232 141-282 (340)
395 COG1132 MdlB ABC-type multidru 94.4 0.089 1.9E-06 53.6 6.4 37 85-121 352-388 (567)
396 COG0466 Lon ATP-dependent Lon 94.4 0.12 2.5E-06 52.2 6.9 93 86-207 348-445 (782)
397 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.14 3E-06 46.4 7.0 38 87-124 35-72 (259)
398 PHA00350 putative assembly pro 94.3 0.3 6.4E-06 46.7 9.3 29 91-119 4-33 (399)
399 TIGR03600 phage_DnaB phage rep 94.3 0.28 6.1E-06 47.9 9.5 133 85-218 191-352 (421)
400 COG0467 RAD55 RecA-superfamily 94.3 0.098 2.1E-06 47.4 5.9 55 87-142 22-76 (260)
401 TIGR02538 type_IV_pilB type IV 94.3 0.11 2.4E-06 52.6 6.8 51 75-125 301-353 (564)
402 TIGR00763 lon ATP-dependent pr 94.3 0.16 3.5E-06 53.6 8.2 26 87-112 346-371 (775)
403 TIGR02858 spore_III_AA stage I 94.2 0.49 1.1E-05 43.0 10.1 17 89-105 112-128 (270)
404 TIGR02639 ClpA ATP-dependent C 94.2 0.26 5.7E-06 51.7 9.5 26 87-112 202-227 (731)
405 KOG0733|consensus 94.2 0.48 1E-05 47.1 10.4 59 40-105 504-562 (802)
406 PRK14950 DNA polymerase III su 94.1 0.26 5.7E-06 50.2 9.1 23 90-112 40-62 (585)
407 TIGR03819 heli_sec_ATPase heli 94.1 0.11 2.4E-06 48.9 5.9 54 75-129 164-218 (340)
408 PRK13695 putative NTPase; Prov 94.1 2.6 5.6E-05 35.4 13.9 30 90-119 2-31 (174)
409 PF03796 DnaB_C: DnaB-like hel 94.1 0.21 4.5E-06 45.2 7.6 133 86-219 17-179 (259)
410 COG2805 PilT Tfp pilus assembl 94.1 0.069 1.5E-06 48.2 4.2 29 87-115 124-152 (353)
411 TIGR02868 CydC thiol reductant 94.1 0.16 3.6E-06 51.2 7.6 20 86-105 359-378 (529)
412 TIGR02788 VirB11 P-type DNA tr 94.0 0.066 1.4E-06 49.8 4.4 43 85-128 141-183 (308)
413 PF13481 AAA_25: AAA domain; P 94.0 0.17 3.6E-06 43.4 6.6 55 87-142 31-95 (193)
414 PRK09087 hypothetical protein; 94.0 0.26 5.7E-06 43.5 7.8 17 88-104 44-60 (226)
415 KOG0741|consensus 94.0 0.24 5.1E-06 48.3 7.9 98 89-217 257-376 (744)
416 PRK05748 replicative DNA helic 94.0 0.3 6.5E-06 48.1 9.0 134 85-219 200-364 (448)
417 TIGR02533 type_II_gspE general 94.0 0.11 2.4E-06 51.5 5.9 51 74-124 226-278 (486)
418 KOG1001|consensus 94.0 0.23 5.1E-06 50.8 8.3 88 328-417 540-637 (674)
419 PF02534 T4SS-DNA_transf: Type 93.9 0.055 1.2E-06 53.7 3.9 52 89-142 45-96 (469)
420 TIGR03346 chaperone_ClpB ATP-d 93.9 0.31 6.8E-06 52.0 9.6 24 87-110 193-216 (852)
421 PRK07414 cob(I)yrinic acid a,c 93.9 0.28 6.2E-06 41.1 7.4 132 88-223 21-161 (178)
422 TIGR02655 circ_KaiC circadian 93.9 0.11 2.4E-06 51.6 5.9 54 87-141 262-315 (484)
423 TIGR00635 ruvB Holliday juncti 93.9 0.33 7.2E-06 45.0 8.8 18 89-106 31-48 (305)
424 PRK12608 transcription termina 93.9 0.033 7.2E-07 52.4 2.0 39 76-114 118-159 (380)
425 COG0630 VirB11 Type IV secreto 93.8 0.15 3.2E-06 47.5 6.1 55 74-129 128-183 (312)
426 KOG1015|consensus 93.8 0.27 5.9E-06 51.0 8.2 130 87-220 695-859 (1567)
427 TIGR03880 KaiC_arch_3 KaiC dom 93.8 0.15 3.3E-06 45.0 6.0 54 87-141 15-68 (224)
428 TIGR02640 gas_vesic_GvpN gas v 93.7 0.19 4.2E-06 45.5 6.7 35 75-109 4-42 (262)
429 cd01131 PilT Pilus retraction 93.7 0.1 2.2E-06 45.1 4.7 39 90-128 3-42 (198)
430 cd01393 recA_like RecA is a b 93.7 0.1 2.2E-06 46.2 4.8 40 87-126 18-63 (226)
431 PRK14954 DNA polymerase III su 93.7 0.34 7.3E-06 49.4 8.8 24 90-113 40-63 (620)
432 COG1223 Predicted ATPase (AAA+ 93.7 0.23 5E-06 43.9 6.5 39 88-130 151-189 (368)
433 PF13307 Helicase_C_2: Helicas 93.6 0.0089 1.9E-07 50.2 -2.1 69 325-400 7-81 (167)
434 COG3267 ExeA Type II secretory 93.6 0.38 8.1E-06 42.5 7.8 49 84-133 46-95 (269)
435 PRK08760 replicative DNA helic 93.6 0.35 7.5E-06 47.9 8.6 131 85-217 226-386 (476)
436 PRK07133 DNA polymerase III su 93.5 0.32 6.9E-06 50.1 8.4 23 90-112 42-64 (725)
437 CHL00176 ftsH cell division pr 93.5 0.61 1.3E-05 47.8 10.4 20 89-108 217-236 (638)
438 COG1221 PspF Transcriptional r 93.5 0.21 4.6E-06 47.6 6.6 117 86-225 99-227 (403)
439 PRK06904 replicative DNA helic 93.5 0.57 1.2E-05 46.3 9.9 133 84-217 217-381 (472)
440 PRK00080 ruvB Holliday junctio 93.5 0.21 4.6E-06 47.0 6.7 20 89-108 52-71 (328)
441 TIGR03743 SXT_TraD conjugative 93.4 0.19 4E-06 51.5 6.7 56 87-142 175-232 (634)
442 TIGR02397 dnaX_nterm DNA polym 93.4 0.36 7.8E-06 45.9 8.4 23 90-112 38-60 (355)
443 PRK07993 DNA polymerase III su 93.4 1 2.3E-05 42.3 11.1 40 75-114 4-50 (334)
444 TIGR01243 CDC48 AAA family ATP 93.3 0.6 1.3E-05 49.1 10.5 21 87-107 211-231 (733)
445 PF10412 TrwB_AAD_bind: Type I 93.3 0.092 2E-06 50.5 4.1 49 86-134 13-61 (386)
446 PRK09435 membrane ATPase/prote 93.3 0.93 2E-05 42.4 10.5 34 90-123 58-91 (332)
447 TIGR02974 phageshock_pspF psp 93.3 0.44 9.6E-06 44.7 8.5 31 76-106 10-40 (329)
448 PRK03992 proteasome-activating 93.3 0.36 7.9E-06 46.5 8.1 21 88-108 165-185 (389)
449 TIGR02237 recomb_radB DNA repa 93.3 0.14 3.1E-06 44.6 4.9 39 87-125 11-49 (209)
450 cd01127 TrwB Bacterial conjuga 93.2 0.077 1.7E-06 51.6 3.4 48 86-133 40-87 (410)
451 PF00154 RecA: recA bacterial 93.2 0.14 3.1E-06 47.4 4.9 88 88-191 53-143 (322)
452 PRK07004 replicative DNA helic 93.2 0.29 6.3E-06 48.2 7.4 132 85-217 210-371 (460)
453 PF03237 Terminase_6: Terminas 93.1 1.4 3.1E-05 41.9 12.1 106 92-203 1-121 (384)
454 TIGR00602 rad24 checkpoint pro 93.1 0.54 1.2E-05 48.0 9.3 19 89-107 111-129 (637)
455 PF04665 Pox_A32: Poxvirus A32 93.1 0.15 3.3E-06 45.1 4.7 36 89-124 14-49 (241)
456 cd01394 radB RadB. The archaea 93.0 0.14 3.1E-06 44.9 4.6 37 87-123 18-54 (218)
457 PRK14953 DNA polymerase III su 93.0 0.48 1E-05 47.0 8.6 22 91-112 41-62 (486)
458 PRK14971 DNA polymerase III su 93.0 0.65 1.4E-05 47.5 9.7 24 90-113 41-64 (614)
459 TIGR01420 pilT_fam pilus retra 93.0 0.18 3.9E-06 47.7 5.4 44 86-129 120-164 (343)
460 PF13555 AAA_29: P-loop contai 92.9 0.16 3.5E-06 34.4 3.6 19 87-105 22-40 (62)
461 cd03247 ABCC_cytochrome_bd The 92.9 0.34 7.4E-06 41.0 6.6 42 176-217 113-154 (178)
462 TIGR00665 DnaB replicative DNA 92.9 0.56 1.2E-05 46.0 8.9 132 85-218 192-353 (434)
463 PF01935 DUF87: Domain of unkn 92.9 0.16 3.5E-06 44.9 4.8 40 88-127 23-63 (229)
464 KOG2004|consensus 92.9 0.38 8.1E-06 48.7 7.5 109 74-207 416-533 (906)
465 CHL00095 clpC Clp protease ATP 92.9 0.71 1.5E-05 49.2 10.2 26 87-112 199-224 (821)
466 COG0210 UvrD Superfamily I DNA 92.9 0.49 1.1E-05 49.1 8.9 67 74-142 3-73 (655)
467 TIGR02012 tigrfam_recA protein 92.9 0.24 5.1E-06 46.0 5.8 90 87-192 54-146 (321)
468 COG2812 DnaX DNA polymerase II 92.7 0.11 2.3E-06 51.2 3.6 114 90-219 40-156 (515)
469 PRK08058 DNA polymerase III su 92.7 0.7 1.5E-05 43.4 8.9 42 176-218 107-148 (329)
470 PRK13764 ATPase; Provisional 92.7 0.18 3.8E-06 50.9 5.1 43 86-128 255-297 (602)
471 PHA02542 41 41 helicase; Provi 92.7 0.55 1.2E-05 46.3 8.5 51 87-138 189-239 (473)
472 PRK13897 type IV secretion sys 92.7 0.13 2.9E-06 52.1 4.2 56 87-144 157-212 (606)
473 cd03115 SRP The signal recogni 92.6 0.32 7E-06 40.9 6.1 33 91-123 3-35 (173)
474 KOG1806|consensus 92.6 0.21 4.6E-06 52.1 5.5 68 74-141 739-808 (1320)
475 PRK07399 DNA polymerase III su 92.6 0.66 1.4E-05 43.2 8.5 25 89-113 27-51 (314)
476 cd03239 ABC_SMC_head The struc 92.5 0.55 1.2E-05 39.8 7.3 41 178-218 115-156 (178)
477 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.5 0.59 1.3E-05 38.0 7.2 32 176-207 85-116 (144)
478 COG2874 FlaH Predicted ATPases 92.4 1.8 3.8E-05 37.4 10.0 129 88-221 28-168 (235)
479 TIGR00176 mobB molybdopterin-g 92.4 0.24 5.3E-06 40.9 4.9 35 91-125 2-36 (155)
480 PRK09165 replicative DNA helic 92.4 0.87 1.9E-05 45.4 9.6 105 86-192 215-354 (497)
481 PF07728 AAA_5: AAA domain (dy 92.4 0.25 5.3E-06 39.9 4.9 23 90-112 1-23 (139)
482 COG1222 RPT1 ATP-dependent 26S 92.4 1 2.2E-05 41.9 9.1 56 41-105 145-202 (406)
483 TIGR03754 conj_TOL_TraD conjug 92.4 0.36 7.8E-06 49.0 6.9 55 87-141 179-235 (643)
484 PRK05636 replicative DNA helic 92.4 0.45 9.8E-06 47.3 7.6 130 86-217 263-422 (505)
485 COG4608 AppF ABC-type oligopep 92.4 0.35 7.7E-06 43.2 6.0 117 86-218 37-168 (268)
486 PRK06647 DNA polymerase III su 92.3 0.6 1.3E-05 47.2 8.4 24 90-113 40-63 (563)
487 PRK10787 DNA-binding ATP-depen 92.3 0.51 1.1E-05 49.7 8.2 23 87-109 348-370 (784)
488 cd00983 recA RecA is a bacter 92.3 0.3 6.5E-06 45.4 5.7 90 87-192 54-146 (325)
489 PRK13850 type IV secretion sys 92.3 0.17 3.8E-06 51.9 4.5 53 87-141 138-190 (670)
490 TIGR01241 FtsH_fam ATP-depende 92.2 0.58 1.3E-05 46.7 8.1 20 88-107 88-107 (495)
491 PF03205 MobB: Molybdopterin g 92.2 0.25 5.3E-06 40.0 4.5 36 90-125 2-37 (140)
492 PRK08006 replicative DNA helic 92.1 0.96 2.1E-05 44.7 9.4 132 85-217 221-383 (471)
493 COG1197 Mfd Transcription-repa 92.1 1.2 2.5E-05 48.0 10.3 110 77-192 731-886 (1139)
494 TIGR01242 26Sp45 26S proteasom 92.0 1 2.2E-05 43.1 9.3 21 88-108 156-176 (364)
495 PRK13822 conjugal transfer cou 92.0 0.2 4.3E-06 51.3 4.6 55 87-143 223-277 (641)
496 KOG0730|consensus 92.0 0.75 1.6E-05 46.1 8.3 20 86-105 466-485 (693)
497 PRK06321 replicative DNA helic 92.0 0.54 1.2E-05 46.4 7.5 132 86-219 224-388 (472)
498 PF03969 AFG1_ATPase: AFG1-lik 92.0 0.7 1.5E-05 43.9 8.0 107 87-223 61-171 (362)
499 TIGR02524 dot_icm_DotB Dot/Icm 92.0 0.26 5.6E-06 46.8 5.0 43 86-128 132-177 (358)
500 COG2255 RuvB Holliday junction 91.9 0.43 9.3E-06 42.9 6.0 19 89-107 53-71 (332)
No 1
>KOG0330|consensus
Probab=100.00 E-value=6.9e-49 Score=348.10 Aligned_cols=314 Identities=17% Similarity=0.199 Sum_probs=256.0
Q ss_pred cccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCC
Q psy2764 41 VTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKT 117 (419)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~ 117 (419)
....+|.+ +|+.+.+. +++++.+++.| |++|+++||.++.|+|+|..|.||||||.+|+++|... ..+.+
T Consensus 58 e~~~sf~d-Lgv~~~L~---~ac~~l~~~~P---T~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~ 130 (476)
T KOG0330|consen 58 ESFKSFAD-LGVHPELL---EACQELGWKKP---TKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLF 130 (476)
T ss_pred hhhcchhh-cCcCHHHH---HHHHHhCcCCC---chhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCc
Confidence 34578888 99999999 99999998877 99999999999999999999999999999988887733 23558
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccc----eEeccce-------ecCCCcEEEEcHHHHHHHHhc-CCCCCCCccEEEE
Q psy2764 118 RTIYTSPIKALSNQKYRDFRETFQDVG----LVTGDFQ-------INTTASCLVMTTEILRSMLYR-GSDVLRDLEYVIF 185 (419)
Q Consensus 118 ~~lii~Pt~~L~~q~~~~~~~~~~~~~----~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIi 185 (419)
+++|++||||||.|+.+.+..++..+| ++.|+.. ..++++|+|+||++|.+.+.+ +...++.++++|+
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 999999999999999999999988744 4677653 456799999999999998884 5678999999999
Q ss_pred eCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccce
Q psy2764 186 DEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265 (419)
Q Consensus 186 DE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (419)
||||++++..|...++.|+..++..+|.++||||++....-.. .. ...+|..+.....+.......+.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~--ra----------sl~~p~~v~~s~ky~tv~~lkQ~ 278 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQ--RA----------SLDNPVKVAVSSKYQTVDHLKQT 278 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHH--hh----------ccCCCeEEeccchhcchHHhhhh
Confidence 9999999999999999999999999999999999997765221 11 22333333222212222222333
Q ss_pred eeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHH
Q psy2764 266 FLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAA 345 (419)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~ 345 (419)
++.+.. +.+-..|+.++....+..+||||+|...+..++-
T Consensus 279 ylfv~~----------------------------------------k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~ 318 (476)
T KOG0330|consen 279 YLFVPG----------------------------------------KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLAL 318 (476)
T ss_pred eEeccc----------------------------------------cccchhHHHHHHhhcCCcEEEEEeccchHHHHHH
Confidence 332211 1122467777777777889999999999999999
Q ss_pred HhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 346 NLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 346 ~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
.|+..|+.+...++.+ ++.|.-.++.|++|.. .||+|||+++||+|||||++ |..-+.||.+..+-|+
T Consensus 319 ~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r----~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaR 393 (476)
T KOG0330|consen 319 LLRNLGFQAIPLHGQMSQSKRLGALNKFKAGAR----SILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTAR 393 (476)
T ss_pred HHHhcCcceecccchhhHHHHHHHHHHHhccCC----cEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccc
Confidence 9999999999977777 8899999999999999 99999999999999999975 8889999998776654
No 2
>KOG0331|consensus
Probab=100.00 E-value=1.1e-48 Score=368.61 Aligned_cols=314 Identities=17% Similarity=0.187 Sum_probs=247.9
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc--------
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-------- 114 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~-------- 114 (419)
...|.+ +++++.+. .++...+|+.| +|+|.+.||.++.|+|++.+|.||||||++|++++.....
T Consensus 90 ~~~f~~-~~ls~~~~---~~lk~~g~~~P---tpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~ 162 (519)
T KOG0331|consen 90 SAAFQE-LGLSEELM---KALKEQGFEKP---TPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSR 162 (519)
T ss_pred chhhhc-ccccHHHH---HHHHhcCCCCC---chhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccC
Confidence 346666 88888888 88999999987 9999999999999999999999999999998888654332
Q ss_pred -CCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccceec-------CCCcEEEEcHHHHHHHHhcCCCCCCCccE
Q psy2764 115 -HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRGSDVLRDLEY 182 (419)
Q Consensus 115 -~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~ 182 (419)
.++++||++||||||.|+...+..+... ..+++|+.+.. .+.+|+|+||+++.+++..+...++++.+
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 3799999999999999999999999876 34688887644 45899999999999999999999999999
Q ss_pred EEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecC--CCCccceEEEEeCC
Q psy2764 183 VIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTL--KRPVPLKHFLYVGP 258 (419)
Q Consensus 183 lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 258 (419)
+|+||||.|++.+|.+.++.|+..+ ++..|++++|||.|.... +++-+.. .+..+.+.... .....+.+
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~q------ 315 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQ------ 315 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhh------
Confidence 9999999999999999999999999 556689999999998876 5543333 22222221110 11111111
Q ss_pred cccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchh
Q psy2764 259 VLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRK 338 (419)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~ 338 (419)
+...+. ......++..++..+......|+||||+|++
T Consensus 316 ---------------------ive~~~----------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 316 ---------------------IVEVCD----------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKR 352 (519)
T ss_pred ---------------------hhhhcC----------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchh
Confidence 111111 0111222334444444556678999999999
Q ss_pred hHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHH
Q psy2764 339 RCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEM 411 (419)
Q Consensus 339 ~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~ 411 (419)
.|++++..|+..++++...|++. +.+|..+|+.|++|+. .||||||+++||+|||++++ |...-.+|.+
T Consensus 353 ~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~----~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHR 428 (519)
T KOG0331|consen 353 TCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKS----PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHR 428 (519)
T ss_pred hHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCc----ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhh
Confidence 99999999999999988877777 8999999999999999 99999999999999998876 6666777777
Q ss_pred HHhcCc
Q psy2764 412 LFQKGL 417 (419)
Q Consensus 412 ~f~~g~ 417 (419)
-.+.|+
T Consensus 429 iGRTGR 434 (519)
T KOG0331|consen 429 IGRTGR 434 (519)
T ss_pred cCcccc
Confidence 666554
No 3
>KOG0947|consensus
Probab=100.00 E-value=1.1e-46 Score=365.67 Aligned_cols=371 Identities=58% Similarity=0.943 Sum_probs=323.2
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
...|.....++....++++.++++...+||+|-.+|++||-++..|.+|+|.|+|.+|||++|.++|...++.+.|++|.
T Consensus 267 k~~wa~~vd~~~~~~df~~lVpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYT 346 (1248)
T KOG0947|consen 267 KFEWAHVVDLSSLVEDFYQLVPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 346 (1248)
T ss_pred cccceeeeecccchHHHHHhchhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHH
Q psy2764 123 SPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEE 202 (419)
Q Consensus 123 ~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~ 202 (419)
.|-++|-+|-++.|+.-|+++|+++|+.++++.+.++|+|.+.|.+|+.++...++++++||+||+|.+.|..++..|+.
T Consensus 347 SPIKALSNQKfRDFk~tF~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEE 426 (1248)
T KOG0947|consen 347 SPIKALSNQKFRDFKETFGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEE 426 (1248)
T ss_pred chhhhhccchHHHHHHhccccceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhH
Q psy2764 203 VLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLA 282 (419)
Q Consensus 203 i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (419)
++-++|+.+++|++|||.||..+++.|++.+....+++.....||+|++++++.... .+-.++..+.|...++..
T Consensus 427 ViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~-----l~kiidq~g~fl~~~~~~ 501 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKS-----LFKIIDQNGIFLLKGIKD 501 (1248)
T ss_pred eeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccc-----eehhhcccchhhhhcchh
Confidence 999999999999999999999999999999999999999999999999999886533 333445555555555544
Q ss_pred HHHHHH--Hhhhh--cCCCC--------CCCCCCCC-------CCCcch--hHHHHHHHHHHHcCCCCEEEEEcchhhHH
Q psy2764 283 AKEVKC--RKQLE--KGGSG--------GGKLNGPF-------TRGAEK--NLFISFLNYLRKSQNLPVVLFTLSRKRCD 341 (419)
Q Consensus 283 ~~~~~~--~~~~~--~~~~~--------~~~~~~~~-------~~~~~~--~~~~~l~~~l~~~~~~~~LIF~~t~~~~~ 341 (419)
+..... .+... ..... |.....+. ....++ ..+-.++.++.....-|++|||-+++.|+
T Consensus 502 a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCd 581 (1248)
T KOG0947|consen 502 AKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCD 581 (1248)
T ss_pred hhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHH
Confidence 443331 00000 00000 11111111 011111 35677788888888889999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 342 QNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 342 ~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
+.|+.|...+++.....++++-...+...+++ |+++.+++|+-+.+++.|||.+||+++.+..+++||.||++|.||
T Consensus 582 e~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk-~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVK 658 (1248)
T KOG0947|consen 582 EYADYLTNLNLTDSKEKSEVHLFLSKAVARLK-GEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVK 658 (1248)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcC-hhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceE
Confidence 99999999999999999988888888999998 999999999999999999999999999999999999999999986
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-45 Score=361.31 Aligned_cols=310 Identities=19% Similarity=0.230 Sum_probs=247.6
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CC-Ce-
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HK-TR- 118 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~-~~- 118 (419)
..|.+ +++++.+. +++.++||..| ||+|.++||.++.|+|++++|+||||||++|.++++.... .. ..
T Consensus 29 ~~F~~-l~l~~~ll---~~l~~~gf~~p---t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~ 101 (513)
T COG0513 29 PEFAS-LGLSPELL---QALKDLGFEEP---TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS 101 (513)
T ss_pred CCHhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc
Confidence 56777 99999999 99999999987 9999999999999999999999999999988887764433 21 12
Q ss_pred EEEEcccHHHHHHHHHHHHHhcccc-----ceEeccceec-------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEe
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQDV-----GLVTGDFQIN-------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~~-----~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiD 186 (419)
+||++||||||.|+++.+..+.... ..++|+.+.. .+++|+|+||+++++++.++...+.++.++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999987653 4678876532 359999999999999999998999999999999
Q ss_pred CCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCC--CCccceEEEEeCCccccc
Q psy2764 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLK--RPVPLKHFLYVGPVLEKN 263 (419)
Q Consensus 187 E~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 263 (419)
|||.|++.+|...++.++..++.+.|+++||||+|.... ++..+.. .+..+.+..... ....+.+.++....
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~-~p~~i~v~~~~~~~~~~~i~q~~~~v~~---- 256 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN-DPVEIEVSVEKLERTLKKIKQFYLEVES---- 256 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc-CCcEEEEccccccccccCceEEEEEeCC----
Confidence 999999999999999999999999999999999998543 3332222 222222211111 22223333222211
Q ss_pred ceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHH
Q psy2764 264 QLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQN 343 (419)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l 343 (419)
...+...|..++......++||||+|+..|+.+
T Consensus 257 -----------------------------------------------~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l 289 (513)
T COG0513 257 -----------------------------------------------EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEEL 289 (513)
T ss_pred -----------------------------------------------HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHH
Confidence 012456777777777777899999999999999
Q ss_pred HHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcC
Q psy2764 344 AANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKG 416 (419)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g 416 (419)
+..|...|+.+...|+.+ +++|.+.++.|++|.. +||||||+++||||||+++ +|.....+|++-.+.|
T Consensus 290 ~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~----~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTg 365 (513)
T COG0513 290 AESLRKRGFKVAALHGDLPQEERDRALEKFKDGEL----RVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTG 365 (513)
T ss_pred HHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCC----CEEEEechhhccCCccccceeEEccCCCCHHHheeccCccc
Confidence 999999999998877777 8999999999999999 9999999999999999766 4666667777544444
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5e-45 Score=361.41 Aligned_cols=320 Identities=14% Similarity=0.126 Sum_probs=244.6
Q ss_pred cCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 34 SNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
+.+.|. |...|.+ +++++.+. +.|.+++|+.| |++|.+++|.+++|+|++++||||||||++|++++....
T Consensus 122 g~~~p~--p~~~f~~-~~l~~~l~---~~l~~~g~~~p---t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i 192 (545)
T PTZ00110 122 GENVPK--PVVSFEY-TSFPDYIL---KSLKNAGFTEP---TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHI 192 (545)
T ss_pred CCCCCc--ccCCHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHH
Confidence 444444 5567887 89999888 89999998876 999999999999999999999999999999888765321
Q ss_pred --------cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccce-------ecCCCcEEEEcHHHHHHHHhcCC
Q psy2764 114 --------NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ-------INTTASCLVMTTEILRSMLYRGS 174 (419)
Q Consensus 114 --------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~~ 174 (419)
..++++|||+||++||.|+.+.+.++... +..++|+.. ...+++|+|+||++|.+++....
T Consensus 193 ~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~ 272 (545)
T PTZ00110 193 NAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV 272 (545)
T ss_pred HhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC
Confidence 13678999999999999999999998764 334566543 23468999999999999998888
Q ss_pred CCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEE
Q psy2764 175 DVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHF 253 (419)
Q Consensus 175 ~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 253 (419)
..+.++++||+||||++++.++...+..++..++++.|++++|||+|.... +++++....+..+.+.......
T Consensus 273 ~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~------ 346 (545)
T PTZ00110 273 TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTA------ 346 (545)
T ss_pred CChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCcccc------
Confidence 889999999999999999999999999999999999999999999987754 5554443222111110000000
Q ss_pred EEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHc--CCCCEE
Q psy2764 254 LYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKS--QNLPVV 331 (419)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~L 331 (419)
.....+.+..+.. ..+...+.+++... ...++|
T Consensus 347 -----~~~i~q~~~~~~~----------------------------------------~~k~~~L~~ll~~~~~~~~k~L 381 (545)
T PTZ00110 347 -----CHNIKQEVFVVEE----------------------------------------HEKRGKLKMLLQRIMRDGDKIL 381 (545)
T ss_pred -----CCCeeEEEEEEec----------------------------------------hhHHHHHHHHHHHhcccCCeEE
Confidence 0001111111100 01122333444332 456899
Q ss_pred EEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChh
Q psy2764 332 LFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPI 404 (419)
Q Consensus 332 IF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~ 404 (419)
|||++++.|+.+++.|...|+.+...|+.+ +++|.+++++|++|+. +|||||+++++|||||+++ +|..
T Consensus 382 IF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~----~ILVaTdv~~rGIDi~~v~~VI~~d~P~s 457 (545)
T PTZ00110 382 IFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS----PIMIATDVASRGLDVKDVKYVINFDFPNQ 457 (545)
T ss_pred EEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCC----cEEEEcchhhcCCCcccCCEEEEeCCCCC
Confidence 999999999999999999998877766655 7899999999999999 9999999999999998765 5777
Q ss_pred hHHHHHHHHhcCc
Q psy2764 405 LKEIVEMLFQKGL 417 (419)
Q Consensus 405 ~r~~ie~~f~~g~ 417 (419)
...++++..|.|+
T Consensus 458 ~~~yvqRiGRtGR 470 (545)
T PTZ00110 458 IEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHhccccc
Confidence 7888888887775
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-45 Score=353.67 Aligned_cols=312 Identities=15% Similarity=0.140 Sum_probs=240.2
Q ss_pred cccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------
Q psy2764 41 VTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------- 113 (419)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~------- 113 (419)
.+...|.+ ++|++.+. ++|.++||..| +|+|++|||.++.|+|++++||||||||++|++++....
T Consensus 5 ~~~~~f~~-~~l~~~l~---~~l~~~g~~~p---t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~ 77 (423)
T PRK04837 5 LTEQKFSD-FALHPQVV---EALEKKGFHNC---TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE 77 (423)
T ss_pred CCCCCHhh-CCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc
Confidence 45577888 99999999 89999999876 999999999999999999999999999999888776322
Q ss_pred ---cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccce-------ecCCCcEEEEcHHHHHHHHhcCCCCCCC
Q psy2764 114 ---NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ-------INTTASCLVMTTEILRSMLYRGSDVLRD 179 (419)
Q Consensus 114 ---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~ 179 (419)
..++++|||+||++||.|+++.+..+... ++.++|+.. ...+++|+|+||+++..++......+.+
T Consensus 78 ~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 78 DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred ccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 13478999999999999999999887654 455666643 2345899999999999999888888999
Q ss_pred ccEEEEeCCcccCCCcchHHHHHHHHhcCC--CCcEEEEeeecCChHH-HH-HHhcCcCCccEEEEecCCCCccceEEEE
Q psy2764 180 LEYVIFDEVHYINDSERGHVWEEVLILLPK--EVCIVMLSATVPNTLE-FA-DWVGNTKKTKVYVVSTLKRPVPLKHFLY 255 (419)
Q Consensus 180 ~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (419)
++++|+||||++++.++...+..++..++. ..+.+++|||++.... +. .++.. +..+.+.........+.+.
T Consensus 158 v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~--p~~i~v~~~~~~~~~i~~~-- 233 (423)
T PRK04837 158 IQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNN--PEYVEVEPEQKTGHRIKEE-- 233 (423)
T ss_pred ccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCC--CEEEEEcCCCcCCCceeEE--
Confidence 999999999999999999999999988874 5678999999987654 22 22222 1111111000000111111
Q ss_pred eCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEc
Q psy2764 256 VGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTL 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~ 335 (419)
+... ....+...+.+++......++||||+
T Consensus 234 ----------~~~~----------------------------------------~~~~k~~~l~~ll~~~~~~~~lVF~~ 263 (423)
T PRK04837 234 ----------LFYP----------------------------------------SNEEKMRLLQTLIEEEWPDRAIIFAN 263 (423)
T ss_pred ----------EEeC----------------------------------------CHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 0000 01123345666666666778999999
Q ss_pred chhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHH
Q psy2764 336 SRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEI 408 (419)
Q Consensus 336 t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ 408 (419)
++..|+.++..|...|+.+...++.+ .++|.+++++|++|+. ++||||++++||||+|+++ +|.....+
T Consensus 264 t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~----~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~y 339 (423)
T PRK04837 264 TKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDL----DILVATDVAARGLHIPAVTHVFNYDLPDDCEDY 339 (423)
T ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCC----cEEEEechhhcCCCccccCEEEEeCCCCchhhe
Confidence 99999999999999999888877766 7889999999999999 9999999999999999886 45566666
Q ss_pred HHHHHhcCc
Q psy2764 409 VEMLFQKGL 417 (419)
Q Consensus 409 ie~~f~~g~ 417 (419)
+++..+.|+
T Consensus 340 iqR~GR~gR 348 (423)
T PRK04837 340 VHRIGRTGR 348 (423)
T ss_pred EeccccccC
Confidence 666666554
No 7
>KOG0335|consensus
Probab=100.00 E-value=3.2e-45 Score=339.51 Aligned_cols=343 Identities=18% Similarity=0.220 Sum_probs=270.3
Q ss_pred hhhhhcccCCCCCCccc-ccceecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC
Q psy2764 10 LGRVLRGQNSGSNRREV-DIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH 88 (419)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~ 88 (419)
.-..+...++++||.++ ++|+..++.++|.+++ .|++ ..+...+. ..+...+|+.| ||+|+.+||.+..|
T Consensus 41 ~~~~~~~~~~~~nfd~~~~i~v~~~G~~~p~~i~--~f~~-~~l~~~l~---~ni~~~~~~~p---tpvQk~sip~i~~G 111 (482)
T KOG0335|consen 41 EQAFFLGISTGINFDKYNDIPVKVSGRDVPPHIP--TFDE-AILGEALA---GNIKRSGYTKP---TPVQKYSIPIISGG 111 (482)
T ss_pred hhhhhhccchhhccCCccceeeeccCCccCCCcc--cccc-cchhHHHh---hccccccccCC---CcceeeccceeecC
Confidence 44556668999999999 8999999999999888 5555 66676776 77888899887 99999999999999
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc-------------CCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccce
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN-------------HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ 151 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~-------------~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~ 151 (419)
++++++|+||||||.+|++++..... ..++++|++||||||.|++++.+++... ....+|+.+
T Consensus 112 rdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~ 191 (482)
T KOG0335|consen 112 RDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD 191 (482)
T ss_pred CceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc
Confidence 99999999999999888887663321 2489999999999999999999998664 445666643
Q ss_pred -------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-CcchHHHHHHHHhcC----CCCcEEEEeee
Q psy2764 152 -------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-SERGHVWEEVLILLP----KEVCIVMLSAT 219 (419)
Q Consensus 152 -------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~----~~~~~l~~SAT 219 (419)
...+++|+|+||++|.+++..+...+++++++|+||||.|+| .+|.+.++.++.... .+.|.++||||
T Consensus 192 ~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAt 271 (482)
T KOG0335|consen 192 LGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSAT 271 (482)
T ss_pred hhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEecc
Confidence 345799999999999999999999999999999999999999 899999999998775 38999999999
Q ss_pred cCChHH-HHH-HhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCC
Q psy2764 220 VPNTLE-FAD-WVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGS 297 (419)
Q Consensus 220 ~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (419)
.|...+ ++. ++.. . .+.+.+..+........+.+.++..
T Consensus 272 fp~~iq~l~~~fl~~-~------------yi~laV~rvg~~~~ni~q~i~~V~~-------------------------- 312 (482)
T KOG0335|consen 272 FPKEIQRLAADFLKD-N------------YIFLAVGRVGSTSENITQKILFVNE-------------------------- 312 (482)
T ss_pred CChhhhhhHHHHhhc-c------------ceEEEEeeeccccccceeEeeeecc--------------------------
Confidence 997765 332 2222 1 1111222222222233333333321
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHcC----CC-----CEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHH
Q psy2764 298 GGGKLNGPFTRGAEKNLFISFLNYLRKSQ----NL-----PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQD 367 (419)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~-----~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~ 367 (419)
.++...|++++.... .. +++|||.|++.|..++..|...+++....|+.. +.+|.+
T Consensus 313 --------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 313 --------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred --------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 223345666654322 22 799999999999999999999999988866655 889999
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCcC
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~i 418 (419)
.++.|++|.. .+||||++++||+|||+|. ||..--++|.+-.+.|+.
T Consensus 379 al~~Fr~g~~----pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 379 ALNDFRNGKA----PVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred HHHHhhcCCc----ceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC
Confidence 9999999999 8999999999999999775 677777788777776653
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1e-44 Score=354.14 Aligned_cols=309 Identities=18% Similarity=0.191 Sum_probs=241.3
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---------C
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---------H 115 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---------~ 115 (419)
.|.+ ++|++.+. +.|.+++|..| |++|.+|++.++.++|++++||||||||++|++++..... .
T Consensus 2 ~f~~-l~l~~~l~---~~l~~~g~~~p---t~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 74 (456)
T PRK10590 2 SFDS-LGLSPDIL---RAVAEQGYREP---TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 (456)
T ss_pred CHHH-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCC
Confidence 5666 99999988 89999999876 9999999999999999999999999999998888764432 2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEE
Q psy2764 116 KTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVI 184 (419)
Q Consensus 116 ~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lI 184 (419)
..++|||+||++||.|+++.+..+... +..++|+.+. ...++|+|+||++|.+++......+.++++||
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEE
Confidence 348999999999999999999988765 3346666543 24589999999999999888888899999999
Q ss_pred EeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCccccc
Q psy2764 185 FDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKN 263 (419)
Q Consensus 185 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (419)
|||||++++.++...+..++..++...|++++|||+++.. +++.++... +..+.+.........+.+.+.
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~~~~~-------- 225 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHN-PLEIEVARRNTASEQVTQHVH-------- 225 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCC-CeEEEEecccccccceeEEEE--------
Confidence 9999999999999999999999999999999999998764 455554432 111111111111111111111
Q ss_pred ceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHH
Q psy2764 264 QLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQN 343 (419)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l 343 (419)
.+. .....+.+...+......++||||+++..|+.+
T Consensus 226 ----~~~----------------------------------------~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l 261 (456)
T PRK10590 226 ----FVD----------------------------------------KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHL 261 (456)
T ss_pred ----EcC----------------------------------------HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHH
Confidence 100 011123444445556667899999999999999
Q ss_pred HHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcC
Q psy2764 344 AANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKG 416 (419)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g 416 (419)
++.|...++.+...|+.+ .++|.++++.|++|+. +|||||+++++|||+|++ ++|.....+++...+.|
T Consensus 262 ~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~----~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaG 337 (456)
T PRK10590 262 AEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI----RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337 (456)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCC----cEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccc
Confidence 999999999888766666 7899999999999999 999999999999999976 45777778888887776
Q ss_pred c
Q psy2764 417 L 417 (419)
Q Consensus 417 ~ 417 (419)
+
T Consensus 338 R 338 (456)
T PRK10590 338 R 338 (456)
T ss_pred c
Confidence 5
No 9
>KOG0328|consensus
Probab=100.00 E-value=4.9e-46 Score=316.70 Aligned_cols=313 Identities=15% Similarity=0.197 Sum_probs=253.0
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCCe
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTR 118 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~~ 118 (419)
+...|.+ +||.+++. +++...||+.| +.+|+.|++.+++|+|++++|.+|+|||..|...+... ..+..+
T Consensus 25 v~~~F~~-Mgl~edlL---rgiY~yGfekP---S~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ 97 (400)
T KOG0328|consen 25 VIPTFDD-MGLKEDLL---RGIYAYGFEKP---SAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQ 97 (400)
T ss_pred cccchhh-cCchHHHH---HHHHHhccCCc---hHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceee
Confidence 3456666 99999998 99999888877 99999999999999999999999999996644444432 235578
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccc----eEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeC
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQDVG----LVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDE 187 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~~~----~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE 187 (419)
++|+.|||||+.|+.+.+..+....+ .+.|+.+. +-+.+++.+||+++.+++.++....+.++++|+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999988633 36666553 34689999999999999999999999999999999
Q ss_pred CcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCccccccee
Q psy2764 188 VHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLF 266 (419)
Q Consensus 188 ~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (419)
||.+++.++..++..+.+.++++.|++++|||+|... ++.+++.. .+..+.+-......
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmt-dpvrilvkrdeltl------------------- 237 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMT-DPVRILVKRDELTL------------------- 237 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcC-CceeEEEecCCCch-------------------
Confidence 9999999999999999999999999999999999775 45554443 22222221111111
Q ss_pred eeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHH
Q psy2764 267 LIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346 (419)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~ 346 (419)
..+++|+..++.++|+ .+.|++++....-.+++|||||+..+.++.+.
T Consensus 238 --------EgIKqf~v~ve~EewK------------------------fdtLcdLYd~LtItQavIFcnTk~kVdwLtek 285 (400)
T KOG0328|consen 238 --------EGIKQFFVAVEKEEWK------------------------FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 285 (400)
T ss_pred --------hhhhhheeeechhhhh------------------------HhHHHHHhhhhehheEEEEecccchhhHHHHH
Confidence 1134444444433333 56888888777777899999999999999999
Q ss_pred hhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 347 LLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 347 L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
+++.++.....|+++ +++|++++.+||.|+. +||++||+-+||||+|.++| |.....+|.+..+.|+
T Consensus 286 m~~~nftVssmHGDm~qkERd~im~dFRsg~S----rvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 286 MREANFTVSSMHGDMEQKERDKIMNDFRSGKS----RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred HHhhCceeeeccCCcchhHHHHHHHHhhcCCc----eEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccc
Confidence 999999988877777 8999999999999999 99999999999999998875 5556688888888876
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4e-44 Score=351.43 Aligned_cols=309 Identities=17% Similarity=0.212 Sum_probs=245.8
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEE
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTI 120 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~l 120 (419)
..|.+ +++++.+. ++|.++||..| ||+|++|++.++.|+|++++||||||||++|.+++..... ...++|
T Consensus 4 ~~f~~-l~l~~~l~---~~l~~~g~~~~---t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~l 76 (460)
T PRK11776 4 TAFST-LPLPPALL---ANLNELGYTEM---TPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQAL 76 (460)
T ss_pred CChhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEE
Confidence 35666 89999988 89999999876 9999999999999999999999999999998888775433 245899
Q ss_pred EEcccHHHHHHHHHHHHHhccc-----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 121 YTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
|++||++|+.|+.+.++.+... +..++|+.+. ..+++|+|+||+++..++.++...+.++++||+|||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 9999999999999999887532 4557777643 346899999999999999888888999999999999
Q ss_pred cccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceee
Q psy2764 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (419)
|++++.++...+..++..++...|++++|||++.... ++..+.. .+..+.+ ........+.+.++...
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~-~~~~i~~-~~~~~~~~i~~~~~~~~--------- 225 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQR-DPVEVKV-ESTHDLPAIEQRFYEVS--------- 225 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcC-CCEEEEE-CcCCCCCCeeEEEEEeC---------
Confidence 9999999999999999999999999999999987654 4443332 1111111 11111111222221111
Q ss_pred eccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 268 IREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
...+...+..++......++||||+|++.|+.+++.|
T Consensus 226 -------------------------------------------~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L 262 (460)
T PRK11776 226 -------------------------------------------PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADAL 262 (460)
T ss_pred -------------------------------------------cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHH
Confidence 1113456677776667778999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhcc------CCCChhhHHHHHHHHhcCc
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHH------SGILPILKEIVEMLFQKGL 417 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~------~~l~~~~r~~ie~~f~~g~ 417 (419)
...++.+...|+.+ +.+|+++++.|++|.. ++||||+++++|||+|+ .++|.....++++..|.|+
T Consensus 263 ~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~----~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR 335 (460)
T PRK11776 263 NAQGFSALALHGDLEQRDRDQVLVRFANRSC----SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGR 335 (460)
T ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHHcCCC----cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccC
Confidence 99999888867666 7899999999999999 99999999999999997 4567777888888877765
No 11
>KOG0948|consensus
Probab=100.00 E-value=1.4e-43 Score=336.49 Aligned_cols=350 Identities=48% Similarity=0.819 Sum_probs=305.1
Q ss_pred cccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc
Q psy2764 65 IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 144 (419)
Q Consensus 65 ~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~ 144 (419)
....+|||++-|+|..||..+..+.+|+|+|.|.+|||.+|.++|...++.+.|||+..|-++|-+|-|+.+..-|+++|
T Consensus 121 ~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 121 PPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred CcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 145 LVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 145 ~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
+.+|+..+++.+..+|+|.+.|.+|+.++...++.+.++|+||+|.|-|..++..|+..+-.+|++.+.+++|||+||..
T Consensus 201 LMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~ 280 (1041)
T KOG0948|consen 201 LMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNAR 280 (1041)
T ss_pred eeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCC--CCCCC
Q psy2764 225 EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGS--GGGKL 302 (419)
Q Consensus 225 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 302 (419)
++++|+..+....+.++...+||.|+.|+++.... ..+++.++..+.|...+|..++............. .+...
T Consensus 281 qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~gg---dGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 281 QFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGG---DGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred HHHHHHHHHhcCCceEEeecCCCCcceeeeecCCC---CeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccc
Confidence 99999999999999999999999999999887655 56788889999999999999888654443332110 01111
Q ss_pred CCC--CCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCc
Q psy2764 303 NGP--FTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRAL 380 (419)
Q Consensus 303 ~~~--~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~ 380 (419)
.|. -....+.+++.. +..+-.+...++|||+-+++.|+.+|-.+.+..++...............+..+. .+++.+
T Consensus 358 kG~~~~~~~~~s~i~ki-Vkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls-eeDr~L 435 (1041)
T KOG0948|consen 358 KGGTGGKGPGDSDIYKI-VKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS-EEDREL 435 (1041)
T ss_pred cCCcCCCCCCcccHHHH-HHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC-hhhccc
Confidence 111 112223344444 3444466677899999999999999999999999988887777777888888887 677788
Q ss_pred hhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 381 PQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 381 ~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
++|.-.-++|.|||.|||.||.+..++.||-||..|.||
T Consensus 436 Pqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvK 474 (1041)
T KOG0948|consen 436 PQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVK 474 (1041)
T ss_pred hHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHH
Confidence 899888999999999999999999999999999999875
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-44 Score=356.96 Aligned_cols=310 Identities=15% Similarity=0.161 Sum_probs=241.3
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-c-------
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-N------- 114 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~------- 114 (419)
.+.|.+ ++|++.+. ++|.+++|..| ||+|.++||.++.|+|++++||||||||++|++++.... .
T Consensus 8 ~~~f~~-l~l~~~l~---~~L~~~g~~~p---tpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~ 80 (572)
T PRK04537 8 DLTFSS-FDLHPALL---AGLESAGFTRC---TPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADR 80 (572)
T ss_pred CCChhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccccc
Confidence 346777 99999998 89999998876 999999999999999999999999999999888876432 1
Q ss_pred --CCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhcC-CCCCCCc
Q psy2764 115 --HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRG-SDVLRDL 180 (419)
Q Consensus 115 --~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~-~~~l~~~ 180 (419)
..+++|||+||++|+.|+++.+.++... +..++|+... ...++|+|+||++|..++.+. ...+..+
T Consensus 81 ~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 81 KPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 1479999999999999999999998765 4557776543 235799999999999988765 3568899
Q ss_pred cEEEEeCCcccCCCcchHHHHHHHHhcCC--CCcEEEEeeecCChHH-HH-HHhcCcCCccEEEEecCCCCccceEEEEe
Q psy2764 181 EYVIFDEVHYINDSERGHVWEEVLILLPK--EVCIVMLSATVPNTLE-FA-DWVGNTKKTKVYVVSTLKRPVPLKHFLYV 256 (419)
Q Consensus 181 ~~lIiDE~h~l~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (419)
++|||||||++++.++...+..++..++. ..|+++||||++.... +. .++.. +..+.+.........+.+.++.
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~ 238 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNE--PEKLVVETETITAARVRQRIYF 238 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcC--CcEEEeccccccccceeEEEEe
Confidence 99999999999999999999999998886 7899999999987653 32 33322 1111111111111111111110
Q ss_pred CCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcc
Q psy2764 257 GPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLS 336 (419)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t 336 (419)
.........+..++......++||||+|
T Consensus 239 ----------------------------------------------------~~~~~k~~~L~~ll~~~~~~k~LVF~nt 266 (572)
T PRK04537 239 ----------------------------------------------------PADEEKQTLLLGLLSRSEGARTMVFVNT 266 (572)
T ss_pred ----------------------------------------------------cCHHHHHHHHHHHHhcccCCcEEEEeCC
Confidence 0112234456666666677789999999
Q ss_pred hhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHH
Q psy2764 337 RKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIV 409 (419)
Q Consensus 337 ~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~i 409 (419)
+..|+.+++.|...++.+...|+.+ ..+|.++++.|++|+. +|||||+++++|||+|+++ +|.....++
T Consensus 267 ~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~----~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yv 342 (572)
T PRK04537 267 KAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQL----EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYV 342 (572)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCC----eEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHh
Confidence 9999999999999999888877766 7889999999999999 9999999999999999655 577777888
Q ss_pred HHHHhcCc
Q psy2764 410 EMLFQKGL 417 (419)
Q Consensus 410 e~~f~~g~ 417 (419)
+...+.|+
T Consensus 343 qRiGRaGR 350 (572)
T PRK04537 343 HRIGRTAR 350 (572)
T ss_pred hhhccccc
Confidence 88777664
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.6e-44 Score=356.45 Aligned_cols=310 Identities=16% Similarity=0.185 Sum_probs=243.7
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEE
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTI 120 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~l 120 (419)
..|.+ ++|++.+. ++|.++||..| +|+|.++|+.++.+++++++||||||||++|.+++.... ...+++|
T Consensus 6 ~~f~~-l~L~~~ll---~al~~~G~~~p---tpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~L 78 (629)
T PRK11634 6 TTFAD-LGLKAPIL---EALNDLGYEKP---SPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQIL 78 (629)
T ss_pred CCHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEE
Confidence 45777 89999998 99999999876 999999999999999999999999999999877765432 2457999
Q ss_pred EEcccHHHHHHHHHHHHHhccc-----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 121 YTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
|++||++|+.|+++.+.++... +..++|+.+. ...++|+|+||+++.+++.+....+.++++||+|||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEA 158 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccH
Confidence 9999999999999998887543 3446666543 345899999999999999888888999999999999
Q ss_pred cccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceee
Q psy2764 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (419)
|.+++.++...+..++..++...|+++||||+|.... +.+.+.. .+..+.+.........+.+. +.
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~-~~~~i~i~~~~~~~~~i~q~------------~~ 225 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMK-EPQEVRIQSSVTTRPDISQS------------YW 225 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcC-CCeEEEccCccccCCceEEE------------EE
Confidence 9999999999999999999999999999999987764 4433322 11111111110000011111 11
Q ss_pred eccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 268 IREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
.+ ......+.+..++......++||||+|+..|+.++..|
T Consensus 226 ~v----------------------------------------~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L 265 (629)
T PRK11634 226 TV----------------------------------------WGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEAL 265 (629)
T ss_pred Ee----------------------------------------chhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHH
Confidence 10 01123456777777766678999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
...|+.+...++.+ +.+|.+++++|++|+. +|||||+++++|||+|++ ++|.....+++...+.|+
T Consensus 266 ~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~----~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGR 338 (629)
T PRK11634 266 ERNGYNSAALNGDMNQALREQTLERLKDGRL----DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338 (629)
T ss_pred HhCCCCEEEeeCCCCHHHHHHHHHHHhCCCC----CEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccC
Confidence 99999888777666 7889999999999999 999999999999999987 567777888888877764
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-43 Score=349.57 Aligned_cols=320 Identities=18% Similarity=0.192 Sum_probs=243.0
Q ss_pred ecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 31 LKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
...+.+.|. |...|.+ +++++.+. +.|.+.||..| ||+|.+||+.++.|+|++++||||||||++|++++.
T Consensus 110 ~~~g~~~p~--pi~~f~~-~~l~~~l~---~~L~~~g~~~p---tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil 180 (518)
T PLN00206 110 HVKGEAVPP--PILSFSS-CGLPPKLL---LNLETAGYEFP---TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPII 180 (518)
T ss_pred EecCCCCCc--hhcCHHh-CCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHH
Confidence 334555554 5677888 89999988 88888888876 999999999999999999999999999999888866
Q ss_pred HHh----------cCCCeEEEEcccHHHHHHHHHHHHHhcccc----ceEeccce-------ecCCCcEEEEcHHHHHHH
Q psy2764 111 LSQ----------NHKTRTIYTSPIKALSNQKYRDFRETFQDV----GLVTGDFQ-------INTTASCLVMTTEILRSM 169 (419)
Q Consensus 111 ~~~----------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~----~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~ 169 (419)
... ..++++|||+||++||.|+.+.++.+.... ..+.|+.. ...+++|+|+||++|..+
T Consensus 181 ~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~ 260 (518)
T PLN00206 181 SRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDL 260 (518)
T ss_pred HHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHH
Confidence 321 256899999999999999999998886642 23444432 234689999999999999
Q ss_pred HhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCc
Q psy2764 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPV 248 (419)
Q Consensus 170 ~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 248 (419)
+.+....+.++++||+||||++++.++...+..++..++ ++|++++|||+++..+ ++.++... ... ........+.
T Consensus 261 l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~-~~~-i~~~~~~~~~ 337 (518)
T PLN00206 261 LSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKD-IIL-ISIGNPNRPN 337 (518)
T ss_pred HHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCC-CEE-EEeCCCCCCC
Confidence 988888899999999999999999999999988888875 6899999999998765 55554431 111 1111111111
Q ss_pred cceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHc--C
Q psy2764 249 PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKS--Q 326 (419)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 326 (419)
.. ..+....+.. ......+.+.+... .
T Consensus 338 ~~-----------v~q~~~~~~~----------------------------------------~~k~~~l~~~l~~~~~~ 366 (518)
T PLN00206 338 KA-----------VKQLAIWVET----------------------------------------KQKKQKLFDILKSKQHF 366 (518)
T ss_pred cc-----------eeEEEEeccc----------------------------------------hhHHHHHHHHHHhhccc
Confidence 10 0111111110 11123444444332 2
Q ss_pred CCCEEEEEcchhhHHHHHHHhhc-CCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC----
Q psy2764 327 NLPVVLFTLSRKRCDQNAANLLS-MDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG---- 400 (419)
Q Consensus 327 ~~~~LIF~~t~~~~~~l~~~L~~-~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~---- 400 (419)
..++||||+++..|+.+++.|.. .|+.+...|+.+ .++|.+++++|++|+. +|||||++++||||+|+++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~----~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEV----PVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCC----CEEEEecHhhccCCcccCCEEEE
Confidence 35799999999999999999975 577776666655 7899999999999999 9999999999999999884
Q ss_pred --CChhhHHHHHHHHhcCc
Q psy2764 401 --ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 401 --l~~~~r~~ie~~f~~g~ 417 (419)
+|.....++++..|.|+
T Consensus 443 ~d~P~s~~~yihRiGRaGR 461 (518)
T PLN00206 443 FDMPNTIKEYIHQIGRASR 461 (518)
T ss_pred eCCCCCHHHHHHhcccccc
Confidence 68888899998888876
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.6e-43 Score=341.86 Aligned_cols=310 Identities=17% Similarity=0.188 Sum_probs=241.7
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------cCCC
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NHKT 117 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-------~~~~ 117 (419)
.|.+ +++++.+. +.+.++||..| +++|.++++.++.|+|++++||||+|||++|++++.... ....
T Consensus 2 ~f~~-l~l~~~l~---~~l~~~g~~~p---~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~ 74 (434)
T PRK11192 2 TFSE-LELDESLL---EALQDKGYTRP---TAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPP 74 (434)
T ss_pred CHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCc
Confidence 4666 99999998 89999999876 999999999999999999999999999999888776432 1247
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEe
Q psy2764 118 RTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186 (419)
Q Consensus 118 ~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiD 186 (419)
++||++||++|+.|+++.+..+... ++.++|+... ..+++|+|+||+++..++......+.++++||+|
T Consensus 75 ~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViD 154 (434)
T PRK11192 75 RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILD 154 (434)
T ss_pred eEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEE
Confidence 8999999999999999999888654 5567776543 3457999999999999998887788999999999
Q ss_pred CCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCCh--HHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccc
Q psy2764 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT--LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQ 264 (419)
Q Consensus 187 E~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (419)
|||++++.++...+..+...++...|+++||||++.. .++..++... +..+...........+.+.++
T Consensus 155 Eah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~~~~~--------- 224 (434)
T PRK11192 155 EADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLND-PVEVEAEPSRRERKKIHQWYY--------- 224 (434)
T ss_pred CHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccC-CEEEEecCCcccccCceEEEE---------
Confidence 9999999999999999999888889999999999754 2466655431 111111000000001111111
Q ss_pred eeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHH
Q psy2764 265 LFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNA 344 (419)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~ 344 (419)
.. .....+.+.+..++......++||||+++++|+.++
T Consensus 225 ---~~---------------------------------------~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~ 262 (434)
T PRK11192 225 ---RA---------------------------------------DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELA 262 (434)
T ss_pred ---Ee---------------------------------------CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHH
Confidence 00 001123345666665556678999999999999999
Q ss_pred HHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 345 ANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 345 ~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
..|...|+.+...++.+ ..+|.++++.|++|+. +|||||+++++|||+|+++ +|.....++++..|.|+
T Consensus 263 ~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~----~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 263 GWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRV----NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred HHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCC----cEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 99999998877766666 8899999999999999 9999999999999999875 56677778877776654
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-42 Score=338.84 Aligned_cols=311 Identities=14% Similarity=0.146 Sum_probs=239.0
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-c-------
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-N------- 114 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~------- 114 (419)
...|.+ +++++.+. ++|.++||..+ +++|.+|++.+..|+|+++++|||||||++|++++.... .
T Consensus 86 ~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~ 158 (475)
T PRK01297 86 KTRFHD-FNLAPELM---HAIHDLGFPYC---TPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKER 158 (475)
T ss_pred CCCHhH-CCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccccc
Confidence 356777 89999998 88888888876 999999999999999999999999999999888876432 1
Q ss_pred --CCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee--------cCCCcEEEEcHHHHHHHHhcCCCCCCCc
Q psy2764 115 --HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI--------NTTASCLVMTTEILRSMLYRGSDVLRDL 180 (419)
Q Consensus 115 --~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~--------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~ 180 (419)
...++|||+||++|+.|+++.++.+... +..++|+... ...++|+|+||++|..+...+...++++
T Consensus 159 ~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 159 YMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred ccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 1478999999999999999999988654 4456676432 2357999999999999888888889999
Q ss_pred cEEEEeCCcccCCCcchHHHHHHHHhcCC--CCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecCCCCccceEEEEeC
Q psy2764 181 EYVIFDEVHYINDSERGHVWEEVLILLPK--EVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 257 (419)
Q Consensus 181 ~~lIiDE~h~l~~~~~~~~~~~i~~~~~~--~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (419)
++|||||||.+++.++...+..++..++. +.|++++|||++... .+++.+... +..+.+.........+...
T Consensus 239 ~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~---- 313 (475)
T PRK01297 239 EVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTD-PAIVEIEPENVASDTVEQH---- 313 (475)
T ss_pred ceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccC-CEEEEeccCcCCCCcccEE----
Confidence 99999999999998999889999888864 679999999987654 344433221 1111110000000011111
Q ss_pred CcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcch
Q psy2764 258 PVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSR 337 (419)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~ 337 (419)
+..+ ........+...+......++||||+++
T Consensus 314 --------~~~~----------------------------------------~~~~k~~~l~~ll~~~~~~~~IVF~~s~ 345 (475)
T PRK01297 314 --------VYAV----------------------------------------AGSDKYKLLYNLVTQNPWERVMVFANRK 345 (475)
T ss_pred --------EEEe----------------------------------------cchhHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 1110 0111234556666666667899999999
Q ss_pred hhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHH
Q psy2764 338 KRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVE 410 (419)
Q Consensus 338 ~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie 410 (419)
++|+.+++.|...|+.....++.+ .++|.++++.|++|+. ++||||+++++|||||+++ +|.....+++
T Consensus 346 ~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~----~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Q 421 (475)
T PRK01297 346 DEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKI----RVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVH 421 (475)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCC----cEEEEccccccCCcccCCCEEEEeCCCCCHHHHHH
Confidence 999999999999988877766655 7889999999999999 9999999999999999775 5777889999
Q ss_pred HHHhcCc
Q psy2764 411 MLFQKGL 417 (419)
Q Consensus 411 ~~f~~g~ 417 (419)
+..|.|+
T Consensus 422 r~GRaGR 428 (475)
T PRK01297 422 RIGRTGR 428 (475)
T ss_pred hhCccCC
Confidence 8888775
No 17
>KOG0338|consensus
Probab=100.00 E-value=8.5e-44 Score=325.34 Aligned_cols=310 Identities=16% Similarity=0.210 Sum_probs=242.0
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHH-Hhc-----CCCe
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQN-----HKTR 118 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~-----~~~~ 118 (419)
.|.+ ++||..+. +++..+||..| ||+|.++||..+-|+|++.+|.||||||.+|.++++. ++. ...|
T Consensus 182 sF~~-mNLSRPlL---ka~~~lGy~~P---TpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TR 254 (691)
T KOG0338|consen 182 SFQS-MNLSRPLL---KACSTLGYKKP---TPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATR 254 (691)
T ss_pred hHHh-cccchHHH---HHHHhcCCCCC---CchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCccee
Confidence 5555 89998888 99999999988 9999999999999999999999999999877777662 222 3468
Q ss_pred EEEEcccHHHHHHHHHHHHHhccc----cceEeccceec-------CCCcEEEEcHHHHHHHHhcC-CCCCCCccEEEEe
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRG-SDVLRDLEYVIFD 186 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~-~~~l~~~~~lIiD 186 (419)
|||++|||+|+.|++...+++..- +|++.||.+.. ..+||+|+||+++.+.+.+. ...+.++.++|+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 999999999999999998887542 78899988754 35999999999999988775 4678999999999
Q ss_pred CCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCccccccee
Q psy2764 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLF 266 (419)
Q Consensus 187 E~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (419)
|||+|++.+|...+..|++.+++++|.++||||+...++-.-.+....+..+++-.....+..+.+. +
T Consensus 335 EADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQE------------F 402 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQE------------F 402 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHH------------H
Confidence 9999999999999999999999999999999999887753333333344444443322222222211 1
Q ss_pred eeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHH
Q psy2764 267 LIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346 (419)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~ 346 (419)
+.+.+.. ...+.. .+..++..--..++|||+.|++.|..+.=.
T Consensus 403 iRIR~~r----------------------------------e~dRea---~l~~l~~rtf~~~~ivFv~tKk~AHRl~Il 445 (691)
T KOG0338|consen 403 IRIRPKR----------------------------------EGDREA---MLASLITRTFQDRTIVFVRTKKQAHRLRIL 445 (691)
T ss_pred heecccc----------------------------------ccccHH---HHHHHHHHhcccceEEEEehHHHHHHHHHH
Confidence 1111100 111222 333334444456799999999999999999
Q ss_pred hhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHh
Q psy2764 347 LLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQ 414 (419)
Q Consensus 347 L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~ 414 (419)
|--.|+.+...|+.+ +.+|-+.++.|+++++ ++|||||+++||+||+.+ .||.....|+.+-.+
T Consensus 446 lGLlgl~agElHGsLtQ~QRlesL~kFk~~ei----dvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGR 516 (691)
T KOG0338|consen 446 LGLLGLKAGELHGSLTQEQRLESLEKFKKEEI----DVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGR 516 (691)
T ss_pred HHHhhchhhhhcccccHHHHHHHHHHHHhccC----CEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhh
Confidence 999999999877766 8999999999999999 999999999999999754 577777777765443
No 18
>KOG0342|consensus
Probab=100.00 E-value=3.5e-43 Score=320.82 Aligned_cols=310 Identities=17% Similarity=0.187 Sum_probs=245.7
Q ss_pred hhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------cCCCeE
Q psy2764 47 AEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NHKTRT 119 (419)
Q Consensus 47 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-------~~~~~~ 119 (419)
++.+.|++... +++.++||+.. |++|+.+++.++.|+|+++.|.||||||++|++++..+. +++-.+
T Consensus 84 f~~~~LS~~t~---kAi~~~GF~~M---T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 84 FEEGSLSPLTL---KAIKEMGFETM---TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hhccccCHHHH---HHHHhcCccch---hHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 34489999888 99999999975 999999999999999999999999999999877765432 356789
Q ss_pred EEEcccHHHHHHHHHHHHHhccc-----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCC-CCCCCccEEEEe
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGS-DVLRDLEYVIFD 186 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~-~~l~~~~~lIiD 186 (419)
+||+|||+||.|++..++++... +++..|+... ...++|+|+||++|.+.+.+.. ...++++++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 99999999999999999988654 6778887643 3479999999999999998865 456778899999
Q ss_pred CCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCC-CccceEEEEeCCcccccc
Q psy2764 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKR-PVPLKHFLYVGPVLEKNQ 264 (419)
Q Consensus 187 E~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (419)
|||++++.+|...++.|+..+++.+|.++||||.+..++ ++.-.-.. ..+++-..... +... ....+
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~--d~~~v~~~d~~~~~Th---------e~l~Q 306 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKR--DPVFVNVDDGGERETH---------ERLEQ 306 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcC--CceEeecCCCCCcchh---------hcccc
Confidence 999999999999999999999999999999999988775 44432221 12222111111 1110 00111
Q ss_pred eeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCC-CCEEEEEcchhhHHHH
Q psy2764 265 LFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQN-LPVVLFTLSRKRCDQN 343 (419)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~LIF~~t~~~~~~l 343 (419)
.+... ........+..++..+.. .++||||+|...+..+
T Consensus 307 gyvv~----------------------------------------~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~ 346 (543)
T KOG0342|consen 307 GYVVA----------------------------------------PSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFH 346 (543)
T ss_pred eEEec----------------------------------------cccchHHHHHHHHHHhcCCceEEEEechhhHHHHH
Confidence 11111 111114566777766665 7899999999999999
Q ss_pred HHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcC
Q psy2764 344 AANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKG 416 (419)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g 416 (419)
+..|....+++...|+.. +..|..+..+|++.+. .||+|||+.+||+|||+|++ |...++||.+..+.|
T Consensus 347 ~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes----gIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 347 AELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES----GILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTA 422 (543)
T ss_pred HHHHhhcCCchhhhhcCCcccccchHHHHHhhccc----ceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcccc
Confidence 999999999998877776 7889999999998888 99999999999999999986 677789999998877
Q ss_pred c
Q psy2764 417 L 417 (419)
Q Consensus 417 ~ 417 (419)
+
T Consensus 423 R 423 (543)
T KOG0342|consen 423 R 423 (543)
T ss_pred c
Confidence 5
No 19
>KOG0333|consensus
Probab=100.00 E-value=1.4e-42 Score=318.44 Aligned_cols=324 Identities=19% Similarity=0.230 Sum_probs=254.8
Q ss_pred ccceecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHH
Q psy2764 27 DIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 27 ~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~ 106 (419)
++-+...++..|. |...|.+ .+++..+. +.+.+.+|.-| +|+|.+|||..++.+|+|.+|.||||||.+|+
T Consensus 230 dynis~kg~~lpn--plrnwEE-~~~P~e~l---~~I~~~~y~ep---tpIqR~aipl~lQ~rD~igvaETgsGktaaf~ 300 (673)
T KOG0333|consen 230 DYNISIKGGRLPN--PLRNWEE-SGFPLELL---SVIKKPGYKEP---TPIQRQAIPLGLQNRDPIGVAETGSGKTAAFL 300 (673)
T ss_pred ceeeeecCCCCCc--cccChhh-cCCCHHHH---HHHHhcCCCCC---chHHHhhccchhccCCeeeEEeccCCccccch
Confidence 4455667888887 7788988 89999888 88999999877 99999999999999999999999999998877
Q ss_pred HHHHHHh------------cCCCeEEEEcccHHHHHHHHHHHHHhccccc----eEeccc-------eecCCCcEEEEcH
Q psy2764 107 YAIALSQ------------NHKTRTIYTSPIKALSNQKYRDFRETFQDVG----LVTGDF-------QINTTASCLVMTT 163 (419)
Q Consensus 107 ~~i~~~~------------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~----~~~g~~-------~~~~~~~Iiv~Tp 163 (419)
.+++.+. ..++++++++|||+|+.|+.+.-.++....| .+.|+. +...+|+|+|+||
T Consensus 301 ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatP 380 (673)
T KOG0333|consen 301 IPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATP 380 (673)
T ss_pred hhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCc
Confidence 7765332 2589999999999999999999999877633 355544 3445699999999
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC-------------------------CCcEEEEee
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-------------------------EVCIVMLSA 218 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~-------------------------~~~~l~~SA 218 (419)
++|...+.+....+.++.++|+||||.+.|.+|.+.+..++.+++. ..|.++|||
T Consensus 381 grLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mfta 460 (673)
T KOG0333|consen 381 GRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTA 460 (673)
T ss_pred hHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEec
Confidence 9999998888788999999999999999999999999999988752 178999999
Q ss_pred ecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCC
Q psy2764 219 TVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGS 297 (419)
Q Consensus 219 T~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (419)
|+|...+ +++.+.. .+..+. +.....+.+. ..+...++.
T Consensus 461 tm~p~verlar~ylr-~pv~vt-ig~~gk~~~r-----------veQ~v~m~~--------------------------- 500 (673)
T KOG0333|consen 461 TMPPAVERLARSYLR-RPVVVT-IGSAGKPTPR-----------VEQKVEMVS--------------------------- 500 (673)
T ss_pred CCChHHHHHHHHHhh-CCeEEE-eccCCCCccc-----------hheEEEEec---------------------------
Confidence 9998875 5543322 111111 1222233221 122222211
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHH-HHHHHHHHHHHHhcCCcC
Q psy2764 298 GGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEK-SKIHRFFQDSIRNLQNED 376 (419)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~-~~~~~~r~~~l~~f~~g~ 376 (419)
.......|.+++..+...++|||+|+++.|+.+|+.|.+.|+.+...| +..+++|..+|+.|++|.
T Consensus 501 -------------ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t 567 (673)
T KOG0333|consen 501 -------------EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGT 567 (673)
T ss_pred -------------chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcC
Confidence 122357888888888888999999999999999999999999988744 555899999999999988
Q ss_pred CCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcC
Q psy2764 377 DRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKG 416 (419)
Q Consensus 377 ~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g 416 (419)
. +|+||||+++||||||+|+| +...-.++.+-.+.|
T Consensus 568 ~----dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTg 609 (673)
T KOG0333|consen 568 G----DILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTG 609 (673)
T ss_pred C----CEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccc
Confidence 8 99999999999999999986 344455555555544
No 20
>KOG0345|consensus
Probab=100.00 E-value=2.8e-42 Score=312.91 Aligned_cols=297 Identities=17% Similarity=0.176 Sum_probs=232.4
Q ss_pred cccchhc-cCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-c-----C
Q psy2764 43 QTEWAEM-LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-N-----H 115 (419)
Q Consensus 43 ~~~~~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~-----~ 115 (419)
...|.+. ..|++++. +++.++||... ||+|..+||.+++++||++.|+||||||++|+++++... + +
T Consensus 3 ~~~~~~l~~~L~~~l~---~~l~~~GF~~m---TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~ 76 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLL---EALDESGFEKM---TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP 76 (567)
T ss_pred CcchhhcCCCccHHHH---HHHHhcCCccc---CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC
Confidence 3456651 34557777 99999999876 999999999999999999999999999999988887554 1 1
Q ss_pred C--CeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccceec--------CCCcEEEEcHHHHHHHHhcCCC--CCC
Q psy2764 116 K--TRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSD--VLR 178 (419)
Q Consensus 116 ~--~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~--~l~ 178 (419)
. .-+|||+|||||+.|+.+.+..+... +.++.|+.+.. ++++|+|+||++|.+++.+... .++
T Consensus 77 ~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~r 156 (567)
T KOG0345|consen 77 PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFR 156 (567)
T ss_pred ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccc
Confidence 2 36999999999999999999887654 66788886543 4589999999999999988543 456
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCC--CCccceEEEEe
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK--RPVPLKHFLYV 256 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 256 (419)
.+.++|+||||++++.+|...++.|++.+|+.++.=+||||...+++-....+..++..+.+-.... .|..+..++..
T Consensus 157 sLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v 236 (567)
T KOG0345|consen 157 SLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLV 236 (567)
T ss_pred ccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeE
Confidence 9999999999999999999999999999999999999999998776533333333344443333222 22223222221
Q ss_pred CCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcc
Q psy2764 257 GPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLS 336 (419)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t 336 (419)
. ....+...+++++.....+++|||.+|
T Consensus 237 ~----------------------------------------------------~a~eK~~~lv~~L~~~~~kK~iVFF~T 264 (567)
T KOG0345|consen 237 C----------------------------------------------------EADEKLSQLVHLLNNNKDKKCIVFFPT 264 (567)
T ss_pred e----------------------------------------------------cHHHHHHHHHHHHhccccccEEEEecC
Confidence 1 123345678888888888999999999
Q ss_pred hhhHHHHHHHhhcC--CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 337 RKRCDQNAANLLSM--DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 337 ~~~~~~l~~~L~~~--~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
...++..+..|... ....-..|+.+ ...|.+++++|++... .+|+|||+++||||||.+++
T Consensus 265 CasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~----~vl~~TDVaARGlDip~iD~ 328 (567)
T KOG0345|consen 265 CASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN----GVLFCTDVAARGLDIPGIDL 328 (567)
T ss_pred cchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC----ceEEeehhhhccCCCCCceE
Confidence 99999999988775 23333367777 6779999999997666 89999999999999999986
No 21
>KOG0326|consensus
Probab=100.00 E-value=1.4e-42 Score=300.39 Aligned_cols=308 Identities=18% Similarity=0.222 Sum_probs=241.7
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEE
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTI 120 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~l 120 (419)
..|.+ +.|..++. ..+.+.||.+| +|+|.++||.++.|+|+++.|..|+|||-+|..+++... +..-+++
T Consensus 85 ~efEd-~~Lkr~LL---mgIfe~G~ekP---SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ 157 (459)
T KOG0326|consen 85 NEFED-YCLKRELL---MGIFEKGFEKP---SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAI 157 (459)
T ss_pred ccHHH-hhhhHHHH---HHHHHhccCCC---CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEE
Confidence 45666 88888887 88999999987 999999999999999999999999999976555544332 3457899
Q ss_pred EEcccHHHHHHHHHHHHHhccccc----eEeccceec-------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 121 YTSPIKALSNQKYRDFRETFQDVG----LVTGDFQIN-------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~~~----~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
|++|||+||.|+...+.++.+..+ +.+|+++.. ...+++|+||++++++..++...++++.++|+||||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 999999999999999999887644 467776543 458999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HH-HHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceee
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FA-DWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (419)
.+++..|.+.++.++..+|++.|++++|||+|..+. +. +++.. |..++..
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~k--------------Py~INLM-------------- 289 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKK--------------PYEINLM-------------- 289 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccC--------------cceeehh--------------
Confidence 999999999999999999999999999999998765 32 33332 2111100
Q ss_pred eccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 268 IREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
+..-.-.+.+|+..+. .+.++.-|-.++....-.+.||||||..+++.+|+.+
T Consensus 290 --~eLtl~GvtQyYafV~-------------------------e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 290 --EELTLKGVTQYYAFVE-------------------------ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred --hhhhhcchhhheeeec-------------------------hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHH
Confidence 0000011222222221 1112222333344444456999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
.+.|+++...|+.| ++.|+++...|++|.+ +.|||||++.||||++.++. |...-.+..+..+.|+
T Consensus 343 TelGyscyyiHakM~Q~hRNrVFHdFr~G~c----rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGR 415 (459)
T KOG0326|consen 343 TELGYSCYYIHAKMAQEHRNRVFHDFRNGKC----RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR 415 (459)
T ss_pred HhccchhhHHHHHHHHhhhhhhhhhhhcccc----ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCcc
Confidence 99999999988888 8899999999999999 99999999999999998764 6666677777766665
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.2e-41 Score=327.66 Aligned_cols=312 Identities=15% Similarity=0.192 Sum_probs=235.0
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~ 119 (419)
...|.+ +++++.+. +++.+++|..| +|+|.+|++.+..++|++++||||||||++|++++..... .+.++
T Consensus 27 ~~~~~~-l~l~~~~~---~~l~~~~~~~~---~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~ 99 (401)
T PTZ00424 27 VDSFDA-LKLNEDLL---RGIYSYGFEKP---SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQA 99 (401)
T ss_pred cCCHhh-CCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceE
Confidence 456666 89998888 88888887765 9999999999999999999999999999998888765543 46789
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEeccce-------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ-------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
||++||++|+.|+.+.+..++.. +..+.|+.. ...+++|+|+||+++..++......+++++++|+|||
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 99999999999999999888754 333455542 2235799999999999988887778999999999999
Q ss_pred cccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceee
Q psy2764 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (419)
|++.+.++...+..++..++.+.|++++|||+++... +...+.. .+..+.+.........+..++ .
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~ 246 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMR-DPKRILVKKDELTLEGIRQFY------------V 246 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcC-CCEEEEeCCCCcccCCceEEE------------E
Confidence 9999888888888888888889999999999987643 3322221 111111100000000111110 0
Q ss_pred eccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 268 IREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
.+. ........+.+.+......++||||+|+++|+.+++.|
T Consensus 247 ~~~---------------------------------------~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l 287 (401)
T PTZ00424 247 AVE---------------------------------------KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKM 287 (401)
T ss_pred ecC---------------------------------------hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHH
Confidence 000 00112244555555556678999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
...++.....++.+ .++|..+++.|++|+. ++||||+++++|||+|.+++ |.....+++...|.|+
T Consensus 288 ~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~----~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR 360 (401)
T PTZ00424 288 HERDFTVSCMHGDMDQKDRDLIMREFRSGST----RVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGR 360 (401)
T ss_pred HHCCCcEEEEeCCCCHHHHHHHHHHHHcCCC----CEEEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccccc
Confidence 99988877766666 7889999999999999 99999999999999997764 5556666666666554
No 23
>KOG0343|consensus
Probab=100.00 E-value=6.3e-42 Score=315.85 Aligned_cols=307 Identities=14% Similarity=0.166 Sum_probs=248.0
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------cCC
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NHK 116 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-------~~~ 116 (419)
..|.+ |.++.... ++|.+.+|..+ |.+|+++||..+.|+|++..|.||||||++|+.+++..+ ..|
T Consensus 69 ~kF~d-lpls~~t~---kgLke~~fv~~---teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DG 141 (758)
T KOG0343|consen 69 KKFAD-LPLSQKTL---KGLKEAKFVKM---TEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDG 141 (758)
T ss_pred hhHHh-CCCchHHH---HhHhhcCCccH---HHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCC
Confidence 45666 99999888 99999999876 999999999999999999999999999999777766332 257
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccc----cceEeccceec------CCCcEEEEcHHHHHHHHhcCC-CCCCCccEEEE
Q psy2764 117 TRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGS-DVLRDLEYVIF 185 (419)
Q Consensus 117 ~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~-~~l~~~~~lIi 185 (419)
.-+|||.|||+||.|+++.+.+.+.. .|++.||.... .+.+|+||||++|+..+..+. ....++.++|+
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 78999999999999999999998775 78899987654 368999999999999888765 46778999999
Q ss_pred eCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEec--CCCCccceEEEEeCCcccc
Q psy2764 186 DEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVST--LKRPVPLKHFLYVGPVLEK 262 (419)
Q Consensus 186 DE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 262 (419)
||||++++.+|...++.|+..+|+.+|.++||||....+. +++ +....+..+.+... ...|..+.++++..+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaR-LsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~---- 296 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLAR-LSLKDPVYVSVHENAVAATPSNLQQSYVIVP---- 296 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHH-hhcCCCcEEEEeccccccChhhhhheEEEEe----
Confidence 9999999999999999999999999999999999988764 554 33323333333211 223333443333221
Q ss_pred cceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHH
Q psy2764 263 NQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQ 342 (419)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~ 342 (419)
...+++.|...+..+...++|||..|.+++..
T Consensus 297 ------------------------------------------------l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 297 ------------------------------------------------LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKF 328 (758)
T ss_pred ------------------------------------------------hhhHHHHHHHHHHhccccceEEEEehhhHHHH
Confidence 23456788888889988999999999999999
Q ss_pred HHHHhhcC--CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHH
Q psy2764 343 NAANLLSM--DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLF 413 (419)
Q Consensus 343 l~~~L~~~--~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f 413 (419)
++..++.. |++....++.+ +..|..+..+|-.... -||+|||+++||+|||+|+. |...-.+|.+..
T Consensus 329 ~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~----~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvG 404 (758)
T KOG0343|consen 329 LYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA----VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVG 404 (758)
T ss_pred HHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc----eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhh
Confidence 99999886 66666666666 7889999999986666 89999999999999999885 555566666654
Q ss_pred h
Q psy2764 414 Q 414 (419)
Q Consensus 414 ~ 414 (419)
+
T Consensus 405 R 405 (758)
T KOG0343|consen 405 R 405 (758)
T ss_pred h
Confidence 4
No 24
>KOG0340|consensus
Probab=100.00 E-value=5.2e-42 Score=300.98 Aligned_cols=313 Identities=15% Similarity=0.208 Sum_probs=237.7
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~ 119 (419)
...|.. +|+++++. +.+..++...| ||+|+.|||.|+.|+|+|.+|.||||||.+|.++++.-.. .+..+
T Consensus 6 ~~~F~~-LGl~~Wlv---e~l~~l~i~~p---TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFa 78 (442)
T KOG0340|consen 6 AKPFSI-LGLSPWLV---EQLKALGIKKP---TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFA 78 (442)
T ss_pred cCchhh-cCccHHHH---HHHHHhcCCCC---CchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceE
Confidence 344556 99999999 99999999987 9999999999999999999999999999887777664433 46789
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEeccce-------ecCCCcEEEEcHHHHHHHHhcC----CCCCCCccEEE
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ-------INTTASCLVMTTEILRSMLYRG----SDVLRDLEYVI 184 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~----~~~l~~~~~lI 184 (419)
+|+.|||+|+-|+.++|..++.. +.+++|+.. ...++|++|+||+++...+..+ ...+++++++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 99999999999999999998775 556888764 4567999999999998877664 23578899999
Q ss_pred EeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCc-cEEEEecCCCCccceEEEEeCCccccc
Q psy2764 185 FDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKT-KVYVVSTLKRPVPLKHFLYVGPVLEKN 263 (419)
Q Consensus 185 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (419)
+||||.+++..|...++.+.+.+|..+|.++||||+.+.... .++..... ..+.++ ....++....+ .
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~q--l~~~~i~k~~a~~~e-~~~~vstvetL--------~ 227 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQ--LFGCPITKSIAFELE-VIDGVSTVETL--------Y 227 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHH--hhcCCcccccceEEe-ccCCCCchhhh--------h
Confidence 999999999999999999999999999999999999866542 22221111 122221 11111111100 1
Q ss_pred ceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHH
Q psy2764 264 QLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQN 343 (419)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l 343 (419)
+.++.+.. +.. +...+ .++..++....+.++||+|+...|+.+
T Consensus 228 q~yI~~~~-------~vk-----------------------------daYLv-~~Lr~~~~~~~~simIFvnttr~cQ~l 270 (442)
T KOG0340|consen 228 QGYILVSI-------DVK-----------------------------DAYLV-HLLRDFENKENGSIMIFVNTTRECQLL 270 (442)
T ss_pred hheeecch-------hhh-----------------------------HHHHH-HHHhhhhhccCceEEEEeehhHHHHHH
Confidence 11111100 000 01111 222223333456799999999999999
Q ss_pred HHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHh
Q psy2764 344 AANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQ 414 (419)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~ 414 (419)
+..|+..++.....|+.+ +++|-..|.+||.+.. ++|+|||+++||+|||+|.| |..-+.+|.+-.+
T Consensus 271 ~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~----~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGR 344 (442)
T KOG0340|consen 271 SMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAA----RILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGR 344 (442)
T ss_pred HHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCc----cEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcc
Confidence 999999999988877777 8899999999999998 99999999999999999876 6777888876543
No 25
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-39 Score=327.80 Aligned_cols=351 Identities=49% Similarity=0.772 Sum_probs=283.6
Q ss_pred cccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 63 VPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 63 l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
+....-.+||+|-++|++|+..+..+.+|+++||||+|||.++.|++......+.++++..|.++|.+|.+..+...++.
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred cCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 45556678999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c----ceEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEee
Q psy2764 143 V----GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSA 218 (419)
Q Consensus 143 ~----~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SA 218 (419)
+ |+++|+.+++..+.++|+|.+.|.+|+.++...+..+..||+||+|.+.+..++..++.++-++++.++++++||
T Consensus 189 v~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 189 VADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred hhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeC
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcC--C
Q psy2764 219 TVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKG--G 296 (419)
Q Consensus 219 T~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 296 (419)
|+||+.++++|+.......+.++....||+|+.++++.. ...+..++....+...++..+...-........ +
T Consensus 269 Tv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~-----~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~ 343 (1041)
T COG4581 269 TVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG-----KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETD 343 (1041)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC-----CceeeeecccccchhhcchhhhhhhhccchhccccC
Confidence 999999999999998899999999999999999998765 334555666655555555433332221100000 0
Q ss_pred C--CCC-CCCC--CCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHH-HHHHHHHHHH
Q psy2764 297 S--GGG-KLNG--PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK-IHRFFQDSIR 370 (419)
Q Consensus 297 ~--~~~-~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~-~~~~r~~~l~ 370 (419)
. .+. +..+ ...........-.+...+.....-++|+||-++..|+..+..+............. ++..-.+.+.
T Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~ 423 (1041)
T COG4581 344 DGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIG 423 (1041)
T ss_pred ccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Confidence 0 000 0000 00000111111345666667777889999999999999999999877766555444 4444455556
Q ss_pred hcCCcCCCCch-hhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 371 NLQNEDDRALP-QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 371 ~f~~g~~~~~~-~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
.+. .++..++ ++......|.|||.+||++|.+..|.+||+||..|.+|
T Consensus 424 ~L~-~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvk 472 (1041)
T COG4581 424 DLA-EEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVK 472 (1041)
T ss_pred hcC-hhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcccee
Confidence 666 4445554 88899999999999999999999999999999999875
No 26
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=342.29 Aligned_cols=317 Identities=24% Similarity=0.306 Sum_probs=240.4
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.|.+ +++++.+. +.+.+.|+.. |+|+|.+|++. +..|+|++++||||||||++|.+++.....++.++||++
T Consensus 2 ~~~~-l~lp~~~~---~~l~~~g~~~---l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~ 74 (737)
T PRK02362 2 KIAE-LPLPEGVI---EFYEAEGIEE---LYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIV 74 (737)
T ss_pred Chhh-cCCCHHHH---HHHHhCCCCc---CCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4566 88998888 7777777754 59999999998 689999999999999999999998887666788999999
Q ss_pred ccHHHHHHHHHHHHHhc---cccceEeccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcc
Q psy2764 124 PIKALSNQKYRDFRETF---QDVGLVTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSER 196 (419)
Q Consensus 124 Pt~~L~~q~~~~~~~~~---~~~~~~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~ 196 (419)
|+++||.|+++.++++. ..++.++|+.... ..++|+|+||+++..++.+....+++++++|+||+|++.+.++
T Consensus 75 P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 75 PLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred ChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999999999863 2367788876543 3589999999999998887666789999999999999998889
Q ss_pred hHHHHHHHHhc---CCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccC
Q psy2764 197 GHVWEEVLILL---PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEG 273 (419)
Q Consensus 197 ~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (419)
+..++.++..+ .++.|++++|||+++..++++|++.. .+....+|+++...+..............
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~----- 223 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQRE----- 223 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeecccccccc-----
Confidence 99998887655 46899999999999999999999863 24566788887665443221000000000
Q ss_pred cccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCC-
Q psy2764 274 EFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDF- 352 (419)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~- 352 (419)
............+.+.+. .++++||||+|++.|+.++..|.....
T Consensus 224 --------------------------------~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~ 269 (737)
T PRK02362 224 --------------------------------VEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKK 269 (737)
T ss_pred --------------------------------CCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhh
Confidence 000001122334444443 456799999999999999998865311
Q ss_pred -----------------------------------CChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhh
Q psy2764 353 -----------------------------------STATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGV 396 (419)
Q Consensus 353 -----------------------------------~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi 396 (419)
....+|+.+ ..+|..+++.|++|.. +||+||+.+++|||+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i----~VLvaT~tla~Gvnl 345 (737)
T PRK02362 270 TLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLI----KVISSTPTLAAGLNL 345 (737)
T ss_pred cCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCC----eEEEechhhhhhcCC
Confidence 112234444 7889999999999999 999999999999999
Q ss_pred ccCCC---------------ChhhHHHHHHHHhcCc
Q psy2764 397 HHSGI---------------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 397 ~~~~l---------------~~~~r~~ie~~f~~g~ 417 (419)
|...+ +-....+++...|.|+
T Consensus 346 Pa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 346 PARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGR 381 (737)
T ss_pred CceEEEEecceeecCCCCceeCCHHHHHHHhhcCCC
Confidence 87533 3344567777777765
No 27
>KOG0346|consensus
Probab=100.00 E-value=6.5e-41 Score=301.52 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=243.3
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---------c
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---------N 114 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---------~ 114 (419)
.+|.+ |||++.+. +++.+.||..| |-+|+.|||.+++|+|+++.|.||||||.+|++++.... .
T Consensus 19 ktFe~-~gLD~Rll---kAi~~lG~ekp---TlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e 91 (569)
T KOG0346|consen 19 KTFEE-FGLDSRLL---KAITKLGWEKP---TLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGE 91 (569)
T ss_pred ccHHH-hCCCHHHH---HHHHHhCcCCc---chhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccc
Confidence 56777 99999999 99999999988 999999999999999999999999999988777765321 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccccce------Eeccce-------ecCCCcEEEEcHHHHHHHHhcCC-CCCCCc
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGL------VTGDFQ-------INTTASCLVMTTEILRSMLYRGS-DVLRDL 180 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~------~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~~-~~l~~~ 180 (419)
.++.++|++||+|||.|++..+.++...++. +.++.+ ..+.++|+|+||+++..++..+. ..+..+
T Consensus 92 ~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l 171 (569)
T KOG0346|consen 92 QGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSL 171 (569)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhe
Confidence 5789999999999999999999988655321 221211 23469999999999999998877 678899
Q ss_pred cEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCC-CCccceEEEEeCCc
Q psy2764 181 EYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK-RPVPLKHFLYVGPV 259 (419)
Q Consensus 181 ~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 259 (419)
.++|+||||.+++.||...+..+...+|+..|-++||||++....-.+.+....+..+..-+... .+..+.++.+.+..
T Consensus 172 ~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 172 SFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred eeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc
Confidence 99999999999999999999999999999999999999998887755555554444433322211 22334444333222
Q ss_pred ccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHH-HcCCCCEEEEEcchh
Q psy2764 260 LEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLR-KSQNLPVVLFTLSRK 338 (419)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~LIF~~t~~ 338 (419)
.++...+..++. .--.++.|||+||++
T Consensus 252 ----------------------------------------------------~DKflllyallKL~LI~gKsliFVNtId 279 (569)
T KOG0346|consen 252 ----------------------------------------------------EDKFLLLYALLKLRLIRGKSLIFVNTID 279 (569)
T ss_pred ----------------------------------------------------chhHHHHHHHHHHHHhcCceEEEEechh
Confidence 111112222221 223456999999999
Q ss_pred hHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHH-----------------------------
Q psy2764 339 RCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQ----------------------------- 388 (419)
Q Consensus 339 ~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~----------------------------- 388 (419)
+|.++--.|.+.|+.+....+++ ...|..++++|..|.. +++||||
T Consensus 280 r~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Y----divIAtD~s~~~~~~eee~kgk~~e~~~kndkkskk 355 (569)
T KOG0346|consen 280 RCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLY----DIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKK 355 (569)
T ss_pred hhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcce----eEEEEccCccchhhhhccccccccccCCCCcccccc
Confidence 99999999999999988877777 6789999999999998 8999998
Q ss_pred ------HHhhhhhhccCC------CChhhHHHHHHHHhcC
Q psy2764 389 ------LLKNGIGVHHSG------ILPILKEIVEMLFQKG 416 (419)
Q Consensus 389 ------~l~~GIDi~~~~------l~~~~r~~ie~~f~~g 416 (419)
-.+||||||||. ||.....+|.+..+.+
T Consensus 356 K~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTa 395 (569)
T KOG0346|consen 356 KLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTA 395 (569)
T ss_pred ccCchhchhccccchheeeeeecCCCCchHHHHHhccccc
Confidence 367999999884 7888899998876654
No 28
>KOG0336|consensus
Probab=100.00 E-value=2.1e-40 Score=295.77 Aligned_cols=337 Identities=16% Similarity=0.154 Sum_probs=252.6
Q ss_pred hcccCCCCCCcccccceecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEE
Q psy2764 14 LRGQNSGSNRREVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFV 93 (419)
Q Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv 93 (419)
|..+|..|..+++. .+...|-+-|..+|.+.|+-.+++. +.+.+.||..| +|+|.+|+|.+++|.|++.
T Consensus 194 ~r~en~~it~dd~K-----~gekrpIPnP~ctFddAFq~~pevm---enIkK~GFqKP---tPIqSQaWPI~LQG~DliG 262 (629)
T KOG0336|consen 194 WRKENFNITCDDLK-----EGEKRPIPNPVCTFDDAFQCYPEVM---ENIKKTGFQKP---TPIQSQAWPILLQGIDLIG 262 (629)
T ss_pred HHHcCCcEEecccc-----cCCcccCCCCcCcHHHHHhhhHHHH---HHHHhccCCCC---CcchhcccceeecCcceEE
Confidence 55555544444332 2333344447888999999999888 99999999987 9999999999999999999
Q ss_pred EcCCCCChhHHHHHHHH-H--------HhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccc------eecC
Q psy2764 94 TAHTSAGKTVIAEYAIA-L--------SQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDF------QINT 154 (419)
Q Consensus 94 ~apTGsGKT~~~~~~i~-~--------~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~------~~~~ 154 (419)
+|.||+|||++|+++-. + -+..++.+|++.||++|+.|+.....++.-+ +.+..|+. ....
T Consensus 263 VAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr 342 (629)
T KOG0336|consen 263 VAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR 342 (629)
T ss_pred EEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc
Confidence 99999999999777632 1 1346899999999999999999888876432 33344432 2345
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCc
Q psy2764 155 TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNT 233 (419)
Q Consensus 155 ~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~ 233 (419)
+.+|+++||++|.++...+...+..+.++|+||||.|++.+|.+.++.++--+++++|+++.|||.|..+. ++.....
T Consensus 343 gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~K- 421 (629)
T KOG0336|consen 343 GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLK- 421 (629)
T ss_pred CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhh-
Confidence 68999999999999999999999999999999999999999999999999999999999999999998875 5543222
Q ss_pred CCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchh
Q psy2764 234 KKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKN 313 (419)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (419)
.+..+++ ....-+.. ....+.+ .+ ..+..
T Consensus 422 ep~~v~v--GsLdL~a~---------~sVkQ~i-~v---------------------------------------~~d~~ 450 (629)
T KOG0336|consen 422 EPMIVYV--GSLDLVAV---------KSVKQNI-IV---------------------------------------TTDSE 450 (629)
T ss_pred CceEEEe--cccceeee---------eeeeeeE-Ee---------------------------------------cccHH
Confidence 1222222 22211111 1111111 11 11122
Q ss_pred HHHHHHHHHHH-cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHh
Q psy2764 314 LFISFLNYLRK-SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLK 391 (419)
Q Consensus 314 ~~~~l~~~l~~-~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~ 391 (419)
+...+..+... ....++||||..+..|+.|...|.-.|+++...|+.- +..|++.++.|++|+. +|||+||+++
T Consensus 451 k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v----rILvaTDlaS 526 (629)
T KOG0336|consen 451 KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV----RILVATDLAS 526 (629)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce----EEEEEechhh
Confidence 22233333322 3446899999999999999999999999988865544 7889999999999999 9999999999
Q ss_pred hhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 392 NGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 392 ~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
||+|+|++. .|...-++|.+..+.|+
T Consensus 527 RGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR 558 (629)
T KOG0336|consen 527 RGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR 558 (629)
T ss_pred cCCCchhcceeeccCCCccHHHHHHHhccccc
Confidence 999998764 57777777777666553
No 29
>KOG0347|consensus
Probab=100.00 E-value=1.3e-40 Score=307.14 Aligned_cols=302 Identities=15% Similarity=0.209 Sum_probs=221.0
Q ss_pred CCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHH--
Q psy2764 36 TLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALS-- 112 (419)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~-- 112 (419)
....++.-+.|.. |.++..+. ++|..+||..| |++|...+|.+..| .|++..|.||||||++|-.+|...
T Consensus 173 ~~~~~~DvsAW~~-l~lp~~iL---~aL~~~gFs~P---t~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~ 245 (731)
T KOG0347|consen 173 DDSSKVDVSAWKN-LFLPMEIL---RALSNLGFSRP---TEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLL 245 (731)
T ss_pred ccccccChHHHhc-CCCCHHHH---HHHHhcCCCCC---ccchhhcccHhhccchhcccccccCCCceeeecchhhhhhh
Confidence 3445667789999 89999999 99999999988 99999999999887 899999999999999865555431
Q ss_pred ------------hcCCCe--EEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHH
Q psy2764 113 ------------QNHKTR--TIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILR 167 (419)
Q Consensus 113 ------------~~~~~~--~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~ 167 (419)
...+++ +||++||||||.|+.+.+...... +..++||... +..++|+|+||++|.
T Consensus 246 ~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 246 ESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred hccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHH
Confidence 123445 999999999999999999998776 4447787643 346999999999999
Q ss_pred HHHhcCCC---CCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-----CCCcEEEEeeecCChHH--HH----------
Q psy2764 168 SMLYRGSD---VLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-----KEVCIVMLSATVPNTLE--FA---------- 227 (419)
Q Consensus 168 ~~~~~~~~---~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~~~~~--~~---------- 227 (419)
.++..+.. .+++++++|+||+|+|...+.-..+..++..+. ...|.+.||||+.-..+ +.
T Consensus 326 eli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~ 405 (731)
T KOG0347|consen 326 ELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKED 405 (731)
T ss_pred HHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhh
Confidence 99987543 577899999999999999898888888888775 36899999999863321 11
Q ss_pred ----------HHhcCcCCccEEEEe-cCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCC
Q psy2764 228 ----------DWVGNTKKTKVYVVS-TLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296 (419)
Q Consensus 228 ----------~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (419)
+.++...+..+.=.. .......+....+.++...+.-
T Consensus 406 ~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~-------------------------------- 453 (731)
T KOG0347|consen 406 ELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDL-------------------------------- 453 (731)
T ss_pred hhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccce--------------------------------
Confidence 111110000000000 0000000000000000000000
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCc
Q psy2764 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNE 375 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g 375 (419)
.++.+ .....+++|||||+++.+.+++-.|...+++....|..| +++|-+.|++|++.
T Consensus 454 --------------------ylyYf-l~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~ 512 (731)
T KOG0347|consen 454 --------------------YLYYF-LTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS 512 (731)
T ss_pred --------------------eEEEE-EeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC
Confidence 01111 234456799999999999999999999999998877666 89999999999988
Q ss_pred CCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 376 DDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 376 ~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
.. .||+|||+++||+|||.+..
T Consensus 513 ~~----~VLiaTDVAARGLDIp~V~H 534 (731)
T KOG0347|consen 513 PS----GVLIATDVAARGLDIPGVQH 534 (731)
T ss_pred CC----eEEEeehhhhccCCCCCcce
Confidence 87 99999999999999997763
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.3e-38 Score=324.44 Aligned_cols=316 Identities=19% Similarity=0.174 Sum_probs=224.2
Q ss_pred CCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHH
Q psy2764 51 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKAL 128 (419)
Q Consensus 51 ~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L 128 (419)
.+++.+. +.|.+.|++.| +++|.+|++.+.+|+|+++++|||||||++|.++++... .++.++|||+|||+|
T Consensus 20 ~l~~~l~---~~L~~~g~~~p---~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVV---AALEAAGIHRP---WQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHH---HHHHHcCCCcC---CHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHH
Confidence 4566666 88888888765 999999999999999999999999999999988877443 356799999999999
Q ss_pred HHHHHHHHHHhcc---ccceEecccee------cCCCcEEEEcHHHHHHHHhcC----CCCCCCccEEEEeCCcccCCCc
Q psy2764 129 SNQKYRDFRETFQ---DVGLVTGDFQI------NTTASCLVMTTEILRSMLYRG----SDVLRDLEYVIFDEVHYINDSE 195 (419)
Q Consensus 129 ~~q~~~~~~~~~~---~~~~~~g~~~~------~~~~~Iiv~Tp~~l~~~~~~~----~~~l~~~~~lIiDE~h~l~~~~ 195 (419)
+.|+++.++++.. .++.+.|+.+. ..+++|+|+||+++...+... ...++++++||+||||.+.+ .
T Consensus 94 a~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~ 172 (742)
T TIGR03817 94 AADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-V 172 (742)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-c
Confidence 9999999998852 25567777643 345899999999987533221 23478999999999999865 4
Q ss_pred chHHHHHHHHh-------cCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeee
Q psy2764 196 RGHVWEEVLIL-------LPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI 268 (419)
Q Consensus 196 ~~~~~~~i~~~-------~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (419)
++..+..++.. .+.++|++++|||+++..++++++.... +.++.....+.....+....+....
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~------ 243 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP---VVAVTEDGSPRGARTVALWEPPLTE------ 243 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC---eEEECCCCCCcCceEEEEecCCccc------
Confidence 66665555443 3467899999999999988777665522 2333333333322222221111000
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~ 348 (419)
..... .. +............+..++.. +.++||||+|++.|+.++..|+
T Consensus 244 ~~~~~--~~---------------------------~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~ 292 (742)
T TIGR03817 244 LTGEN--GA---------------------------PVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIAR 292 (742)
T ss_pred ccccc--cc---------------------------ccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHH
Confidence 00000 00 00000111223344444443 4579999999999999999887
Q ss_pred cC--------CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHH
Q psy2764 349 SM--------DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLF 413 (419)
Q Consensus 349 ~~--------~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f 413 (419)
.. +......++.+ +++|.+++++|++|+. ++||||+++++||||++++ +|.....++++..
T Consensus 293 ~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i----~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiG 368 (742)
T TIGR03817 293 RLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGEL----LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAG 368 (742)
T ss_pred HHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCc----eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhcc
Confidence 53 34444444444 8899999999999999 9999999999999999766 5778888998888
Q ss_pred hcCc
Q psy2764 414 QKGL 417 (419)
Q Consensus 414 ~~g~ 417 (419)
|.|+
T Consensus 369 RaGR 372 (742)
T TIGR03817 369 RAGR 372 (742)
T ss_pred ccCC
Confidence 8875
No 31
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-38 Score=325.16 Aligned_cols=298 Identities=23% Similarity=0.307 Sum_probs=225.6
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEE
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYT 122 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii 122 (419)
.|.+ +++++.+. +.+.+.|+.. |+|+|.+|++. +..|+|++++||||||||++|.+++... ...+.++|||
T Consensus 2 ~~~~-l~l~~~~~---~~l~~~g~~~---l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l 74 (720)
T PRK00254 2 KVDE-LRVDERIK---RVLKERGIEE---LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYL 74 (720)
T ss_pred cHHH-cCCCHHHH---HHHHhCCCCC---CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3445 78888888 7888888765 49999999986 6899999999999999999998887643 4567899999
Q ss_pred cccHHHHHHHHHHHHHhc---cccceEeccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc
Q psy2764 123 SPIKALSNQKYRDFRETF---QDVGLVTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE 195 (419)
Q Consensus 123 ~Pt~~L~~q~~~~~~~~~---~~~~~~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~ 195 (419)
+|+++|+.|+++.+..+. ..++.++|+.... .+++|+|+||+++..++.+....+++++++|+||+|.+.+.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred eChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc
Confidence 999999999999998753 2366788876533 358999999999999887776778999999999999999888
Q ss_pred chHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcc
Q psy2764 196 RGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 275 (419)
Q Consensus 196 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (419)
++..++.++..+..++|++++|||+++..++++|++.. .+....+|+++...++.... .......
T Consensus 155 rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~~-------~~~~~~~-- 219 (720)
T PRK00254 155 RGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQGF-------LFWEDGK-- 219 (720)
T ss_pred chHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCCe-------eeccCcc--
Confidence 99999999999988999999999999999999999863 23456677776543322111 0000000
Q ss_pred cchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC-----
Q psy2764 276 LTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM----- 350 (419)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~----- 350 (419)
...+ .......+.+.+. .++++||||+|++.|+.++..|...
T Consensus 220 -~~~~------------------------------~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~ 266 (720)
T PRK00254 220 -IERF------------------------------PNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFL 266 (720)
T ss_pred -hhcc------------------------------hHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhc
Confidence 0000 0111223334443 3456999999999999888777431
Q ss_pred ----------------------------CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 351 ----------------------------DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 351 ----------------------------~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
......+|+.+ .++|..+.+.|++|.. +|||||+.+++|||+|...+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i----~VLvaT~tLa~Gvnipa~~v 342 (720)
T PRK00254 267 TKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLI----KVITATPTLSAGINLPAFRV 342 (720)
T ss_pred CchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCC----eEEEeCcHHhhhcCCCceEE
Confidence 01122344444 7889999999999999 99999999999999986543
No 32
>KOG0339|consensus
Probab=100.00 E-value=1e-38 Score=291.84 Aligned_cols=302 Identities=16% Similarity=0.185 Sum_probs=237.4
Q ss_pred ccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 33 ISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+.++|. |-..|.+ +|.+..|. .++.+..|..| ||+|.+++|..+.|++++-+|-||||||-+|++++...
T Consensus 214 ~g~s~~r--pvtsfeh-~gfDkqLm---~airk~Ey~kp---tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~h 284 (731)
T KOG0339|consen 214 SGSSPPR--PVTSFEH-FGFDKQLM---TAIRKSEYEKP---TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVH 284 (731)
T ss_pred ccCCCCC--Ccchhhh-cCchHHHH---HHHhhhhcccC---CcccccccccccccccchheeeccCcchhHHHHHHHHH
Confidence 3444444 4555666 99998888 89999998877 99999999999999999999999999998877775522
Q ss_pred -------h-cCCCeEEEEcccHHHHHHHHHHHHHhccccc----eEeccce-------ecCCCcEEEEcHHHHHHHHhcC
Q psy2764 113 -------Q-NHKTRTIYTSPIKALSNQKYRDFRETFQDVG----LVTGDFQ-------INTTASCLVMTTEILRSMLYRG 173 (419)
Q Consensus 113 -------~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~----~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~ 173 (419)
. ..++..||++|||+|+.|++..++++++.++ .++|+.+ ...++.||||||++|..++...
T Consensus 285 imdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK 364 (731)
T KOG0339|consen 285 IMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK 364 (731)
T ss_pred hcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh
Confidence 2 3689999999999999999999999977533 3555543 2356999999999999999999
Q ss_pred CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHH-HhcCcCCccEEEEecCCCCccce
Q psy2764 174 SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FAD-WVGNTKKTKVYVVSTLKRPVPLK 251 (419)
Q Consensus 174 ~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~ 251 (419)
...+.++.+||+||+++|++.+|.+.++.|..++++++|.|+||||++...+ +++ +|.. +..+...+.....
T Consensus 365 atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~d--pVrvVqg~vgean---- 438 (731)
T KOG0339|consen 365 ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSD--PVRVVQGEVGEAN---- 438 (731)
T ss_pred cccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcC--CeeEEEeehhccc----
Confidence 9999999999999999999999999999999999999999999999987664 443 3333 1111111111111
Q ss_pred EEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-cCCCCE
Q psy2764 252 HFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-SQNLPV 330 (419)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 330 (419)
....+....+ .....++.+|++.|.. ...+++
T Consensus 439 --------~dITQ~V~V~---------------------------------------~s~~~Kl~wl~~~L~~f~S~gkv 471 (731)
T KOG0339|consen 439 --------EDITQTVSVC---------------------------------------PSEEKKLNWLLRHLVEFSSEGKV 471 (731)
T ss_pred --------cchhheeeec---------------------------------------cCcHHHHHHHHHHhhhhccCCcE
Confidence 1112222111 1122345567776644 344679
Q ss_pred EEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC
Q psy2764 331 VLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG 400 (419)
Q Consensus 331 LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~ 400 (419)
|||+..+..+++++..|...|++....|+.+ +.+|+++|.+|+++.. .||++||+++||+||++..
T Consensus 472 lifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~----~VlvatDvaargldI~~ik 538 (731)
T KOG0339|consen 472 LIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK----PVLVATDVAARGLDIPSIK 538 (731)
T ss_pred EEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC----ceEEEeeHhhcCCCccccc
Confidence 9999999999999999999999998877766 8899999999998888 8999999999999999654
No 33
>KOG0952|consensus
Probab=100.00 E-value=1.1e-38 Score=313.52 Aligned_cols=288 Identities=26% Similarity=0.402 Sum_probs=228.4
Q ss_pred CCC-ccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHhc----------CCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 71 PFE-LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQN----------HKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 71 ~~~-~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~~----------~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
+|+ ++.+|..++|.+ .++.|.||+||||+|||.+|++.|+...+ ...++++|+|+++||.++++.|.+
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 445 899999999997 78899999999999999999999986654 578999999999999999999999
Q ss_pred hccc----cceEeccceecC----CCcEEEEcHHHHHHHHhcC---CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 139 TFQD----VGLVTGDFQINT----TASCLVMTTEILRSMLYRG---SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 139 ~~~~----~~~~~g~~~~~~----~~~Iiv~Tp~~l~~~~~~~---~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
.+.. +.-++|+++... .++|||+|||+|.-.-.+. ...+..+++|||||+|.+-+ .+++.++.|+++.
T Consensus 187 kl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVaRt 265 (1230)
T KOG0952|consen 187 KLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVART 265 (1230)
T ss_pred hcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHHHH
Confidence 8875 455888876543 5999999999997443332 24577899999999998865 7899999888654
Q ss_pred C-------CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhh
Q psy2764 208 P-------KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGY 280 (419)
Q Consensus 208 ~-------~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (419)
. ..++++++|||+||..|++.||+.+....++.|+..++|+|+...++......... ..
T Consensus 266 lr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~-----------~~--- 331 (1230)
T KOG0952|consen 266 LRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQ-----------QK--- 331 (1230)
T ss_pred HHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchh-----------hh---
Confidence 2 57999999999999999999999998999999999999999998877555421100 11
Q ss_pred hHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHH
Q psy2764 281 LAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK 360 (419)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 360 (419)
...+...++.+.+.+..+. +++|||++|..+.+.|+.|.+.+.....
T Consensus 332 ---------------------------~~~d~~~~~kv~e~~~~g~--qVlvFvhsR~~Ti~tA~~l~~~a~~~g~---- 378 (1230)
T KOG0952|consen 332 ---------------------------KNIDEVCYDKVVEFLQEGH--QVLVFVHSRNETIRTAKKLRERAETNGE---- 378 (1230)
T ss_pred ---------------------------hhHHHHHHHHHHHHHHcCC--eEEEEEecChHHHHHHHHHHHHHHhcCc----
Confidence 1223445677777776554 4999999999999999999886332221
Q ss_pred HHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 361 IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 361 ~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
.+.|-.+. +--....++.+|+.+||++|+..+|.++|+.|+.|.|+
T Consensus 379 --------~~~f~~~~-----~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~ 424 (1230)
T KOG0952|consen 379 --------KDLFLPSP-----RNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK 424 (1230)
T ss_pred --------ccccCCCh-----hhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce
Confidence 11122111 11235678999999999999999999999999999885
No 34
>KOG0341|consensus
Probab=100.00 E-value=1.6e-40 Score=294.56 Aligned_cols=322 Identities=17% Similarity=0.209 Sum_probs=251.3
Q ss_pred eecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 30 ILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
+...+.+.|+ |-..|.+ +..+..+. +.|.+-|...| ||+|.+-+|.+++|+|.|.+|-||||||++|.+++
T Consensus 158 I~veGd~ipP--PIksF~e-MKFP~~~L---~~lk~KGI~~P---TpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~ 228 (610)
T KOG0341|consen 158 ILVEGDDIPP--PIKSFKE-MKFPKPLL---RGLKKKGIVHP---TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPV 228 (610)
T ss_pred EEeeCCCCCC--chhhhhh-ccCCHHHH---HHHHhcCCCCC---CceeecCcceEeecCceeeEEeecCCceEEEeHHH
Confidence 4444556665 3445566 77777777 78888888877 99999999999999999999999999999988875
Q ss_pred HHH-----------hcCCCeEEEEcccHHHHHHHHHHHHHhccc----------cceEeccceec-------CCCcEEEE
Q psy2764 110 ALS-----------QNHKTRTIYTSPIKALSNQKYRDFRETFQD----------VGLVTGDFQIN-------TTASCLVM 161 (419)
Q Consensus 110 ~~~-----------~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----------~~~~~g~~~~~-------~~~~Iiv~ 161 (419)
..+ ...++..|||||+|+|+.|+++.+..++.. .+++.|+.+.. .+.+|+|+
T Consensus 229 imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVA 308 (610)
T KOG0341|consen 229 IMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVA 308 (610)
T ss_pred HHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEc
Confidence 421 246899999999999999999999887643 45688887644 46899999
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEE
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYV 240 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~ 240 (419)
||++|.+++......+.-++++.+||||++.+.+|...++.+...+...+|.++||||+|...+ +++
T Consensus 309 TPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk------------ 376 (610)
T KOG0341|consen 309 TPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK------------ 376 (610)
T ss_pred CcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHH------------
Confidence 9999999999998999999999999999999999999999999999999999999999998766 333
Q ss_pred EecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHH
Q psy2764 241 VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLN 320 (419)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (419)
+....|+.+++.-......+..+...++ . ..+++-.+++
T Consensus 377 -SALVKPvtvNVGRAGAAsldViQevEyV---------------k-------------------------qEaKiVylLe 415 (610)
T KOG0341|consen 377 -SALVKPVTVNVGRAGAASLDVIQEVEYV---------------K-------------------------QEAKIVYLLE 415 (610)
T ss_pred -hhcccceEEecccccccchhHHHHHHHH---------------H-------------------------hhhhhhhHHH
Confidence 1233444433321111111111111111 0 1122234444
Q ss_pred HHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHH-HHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 321 YLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK-IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 321 ~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~-~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
.+ +....++||||..+..++.+.++|--.|+.+...|+. .+++|...++.||.|+- +|||+||+++.|+|||++
T Consensus 416 CL-QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkK----DVLVATDVASKGLDFp~i 490 (610)
T KOG0341|consen 416 CL-QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKK----DVLVATDVASKGLDFPDI 490 (610)
T ss_pred Hh-ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCC----ceEEEecchhccCCCccc
Confidence 44 3445679999999999999999999999988885544 48999999999999999 999999999999999854
Q ss_pred ------CCChhhHHHHHHHHhcCcC
Q psy2764 400 ------GILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 400 ------~l~~~~r~~ie~~f~~g~i 418 (419)
+||...-++|.+..+.|+.
T Consensus 491 qHVINyDMP~eIENYVHRIGRTGRs 515 (610)
T KOG0341|consen 491 QHVINYDMPEEIENYVHRIGRTGRS 515 (610)
T ss_pred hhhccCCChHHHHHHHHHhcccCCC
Confidence 7899999999999888863
No 35
>KOG0332|consensus
Probab=100.00 E-value=9.4e-39 Score=282.16 Aligned_cols=296 Identities=13% Similarity=0.130 Sum_probs=231.0
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHHhc---CCC
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQN---HKT 117 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~ 117 (419)
..+|.+ ++|.|++. ++|..|+|.+| +.+|..|+|.++ ..+|.|.++..|+|||.+|.+.++.... ..+
T Consensus 89 ~ksFee-L~LkPell---kgly~M~F~kP---skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 89 AKSFEE-LRLKPELL---KGLYAMKFQKP---SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVP 161 (477)
T ss_pred cccHHh-hCCCHHHH---hHHHHhccCCc---chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCC
Confidence 345555 99999999 99999999988 999999999985 4589999999999999988887775543 568
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccccce----EeccceecC----CCcEEEEcHHHHHHHHhc-CCCCCCCccEEEEeCC
Q psy2764 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQINT----TASCLVMTTEILRSMLYR-GSDVLRDLEYVIFDEV 188 (419)
Q Consensus 118 ~~lii~Pt~~L~~q~~~~~~~~~~~~~~----~~g~~~~~~----~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIiDE~ 188 (419)
++++|+|||+||.|+.+.+.++++..++ ..-+..... ..+|+|+||+.+.+++.. ....+..++.+|+|||
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 9999999999999999999999876422 111222222 268999999999998887 6778899999999999
Q ss_pred cccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCccccccee
Q psy2764 189 HYIND-SERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLF 266 (419)
Q Consensus 189 h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (419)
|.+++ +|++..--.|...++++.|+++||||+...+. ++..+-. .+..+.+......-.++
T Consensus 242 D~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivp-n~n~i~Lk~eel~L~~I---------------- 304 (477)
T KOG0332|consen 242 DVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVP-NANVIILKREELALDNI---------------- 304 (477)
T ss_pred hhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcC-CCceeeeehhhccccch----------------
Confidence 97754 46888888899999999999999999976653 4432222 11111111111111122
Q ss_pred eeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHH
Q psy2764 267 LIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346 (419)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~ 346 (419)
.+|+..+ ..+.++++.+.+++....-++.||||.|++.|.+++..
T Consensus 305 -----------kQlyv~C------------------------~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 305 -----------KQLYVLC------------------------ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEE 349 (477)
T ss_pred -----------hhheeec------------------------cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHH
Confidence 2222111 12345678888887776677899999999999999999
Q ss_pred hhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 347 LLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 347 L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
|+..|......|+.+ ..+|..++++||.|.. +|||+|++++||||++.|++
T Consensus 350 m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~----kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 350 MRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE----KVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred HHhcCceeEEeeccchhHHHHHHHHHHhcCcc----eEEEEechhhcccccceEEE
Confidence 999999988877777 7899999999999999 99999999999999998875
No 36
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-37 Score=318.32 Aligned_cols=311 Identities=24% Similarity=0.307 Sum_probs=230.2
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.|.+ +++++.+. +.+.+.+ |+++++|.++++.+.++++++++||||||||+++.+++......+.++++++|
T Consensus 2 ~~~~-~~l~~~~~---~~~~~~~----~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P 73 (674)
T PRK01172 2 KISD-LGYDDEFL---NLFTGND----FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVP 73 (674)
T ss_pred cHhh-cCCCHHHH---HHHhhCC----CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEec
Confidence 4555 78888877 5555544 45799999999999999999999999999999998888766666789999999
Q ss_pred cHHHHHHHHHHHHHhcc---ccceEeccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcch
Q psy2764 125 IKALSNQKYRDFRETFQ---DVGLVTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERG 197 (419)
Q Consensus 125 t~~L~~q~~~~~~~~~~---~~~~~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~ 197 (419)
+++||.|+++.+.++.. .++..+|+.... ..++|+|+||+++..++.+....+.+++++|+||+|++.+.+++
T Consensus 74 ~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 74 LRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred hHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 99999999999987532 356677765432 35899999999999998887777899999999999999988888
Q ss_pred HHHHHHHHhc---CCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCc
Q psy2764 198 HVWEEVLILL---PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 274 (419)
Q Consensus 198 ~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (419)
..++.++..+ +.+.|++++|||+++..++++|++.. .+....+|+++...+..... .+ .+...
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~------~~~~~~r~vpl~~~i~~~~~-----~~--~~~~~- 219 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNANELAQWLNAS------LIKSNFRPVPLKLGILYRKR-----LI--LDGYE- 219 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCC------ccCCCCCCCCeEEEEEecCe-----ee--ecccc-
Confidence 8888876643 46899999999999999999999863 23456677777654432211 00 00000
Q ss_pred ccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCC--
Q psy2764 275 FLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDF-- 352 (419)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~-- 352 (419)
.........+.+.. ..++++||||++++.|+.++..|.....
T Consensus 220 ----------------------------------~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~ 263 (674)
T PRK01172 220 ----------------------------------RSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEF 263 (674)
T ss_pred ----------------------------------cccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 00000112222222 3456799999999999999998865311
Q ss_pred -----------------------CChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCC------
Q psy2764 353 -----------------------STATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL------ 402 (419)
Q Consensus 353 -----------------------~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~------ 402 (419)
....+|+.+ .++|..+.+.|++|.. +|||||+++++|||+|...+.
T Consensus 264 ~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i----~VLvaT~~la~Gvnipa~~VII~~~~~ 339 (674)
T PRK01172 264 NDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI----KVIVATPTLAAGVNLPARLVIVRDITR 339 (674)
T ss_pred ccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC----eEEEecchhhccCCCcceEEEEcCceE
Confidence 011234444 7889999999999999 999999999999999853221
Q ss_pred --------hhhHHHHHHHHhcCc
Q psy2764 403 --------PILKEIVEMLFQKGL 417 (419)
Q Consensus 403 --------~~~r~~ie~~f~~g~ 417 (419)
-...++.+...+.|+
T Consensus 340 ~~~~~~~~~s~~~~~Qm~GRAGR 362 (674)
T PRK01172 340 YGNGGIRYLSNMEIKQMIGRAGR 362 (674)
T ss_pred eCCCCceeCCHHHHHHHhhcCCC
Confidence 123456666666664
No 37
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=312.57 Aligned_cols=300 Identities=28% Similarity=0.406 Sum_probs=220.7
Q ss_pred CccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHH---HhccccceEe
Q psy2764 73 ELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFR---ETFQDVGLVT 147 (419)
Q Consensus 73 ~~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~~~~---~~~~~~~~~~ 147 (419)
++.+.|+.++... .+++|+++++|||||||++++++|.....+ +.++++|+|+++||.|.++.|+ .++..++..+
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~T 110 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIST 110 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEec
Confidence 4567777777664 668999999999999999999988765544 6899999999999999999999 3344588999
Q ss_pred ccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC---CCcEEEEeeec
Q psy2764 148 GDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK---EVCIVMLSATV 220 (419)
Q Consensus 148 g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~---~~~~l~~SAT~ 220 (419)
|+.+.. .+++|+|+|||++.+...+....+..+++|||||+|.+.+..+++.++.+...... ..|++++|||+
T Consensus 111 gD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl 190 (766)
T COG1204 111 GDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL 190 (766)
T ss_pred CCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec
Confidence 998744 36999999999999999988888999999999999999998799999999887653 48999999999
Q ss_pred CChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCC
Q psy2764 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGG 300 (419)
Q Consensus 221 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (419)
||..++++|++.......+.+.+..++++....++......+
T Consensus 191 pN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-------------------------------------- 232 (766)
T COG1204 191 PNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-------------------------------------- 232 (766)
T ss_pred CCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc--------------------------------------
Confidence 999999999999655444555555666665555444333111
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCc
Q psy2764 301 KLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRAL 380 (419)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~ 380 (419)
.+....+...+..+.+.+.. ++++||||+|++.+...|+.|+..-.......... ........+-.++. ..
T Consensus 233 ----~~~~~~~~~~~~~v~~~~~~--~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~--~~~~~a~~~~~~~~-~~ 303 (766)
T COG1204 233 ----TWPLLIDNLALELVLESLAE--GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKI--VLDEGASPILIPET-PT 303 (766)
T ss_pred ----cccccchHHHHHHHHHHHhc--CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhh--hccccccccccccc-cc
Confidence 01112233334455555443 44599999999999999999985211100000000 01111222221111 00
Q ss_pred hhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 381 PQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 381 ~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
........++.+|+.+||++|+..+|.++|.+|++|+||
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik 342 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK 342 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce
Confidence 123567899999999999999999999999999999986
No 38
>KOG0348|consensus
Probab=100.00 E-value=4e-38 Score=289.84 Aligned_cols=330 Identities=16% Similarity=0.178 Sum_probs=222.7
Q ss_pred cccccchhccCCCccccccccccc-cccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh------
Q psy2764 41 VTQTEWAEMLDVSKPVLDFDAKVP-IMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------ 113 (419)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~------ 113 (419)
+....|.+ +||++.+. ..|. .|++.- ||.+|+++||.+++|+|++|.++||||||++|++++...+
T Consensus 133 fts~~f~~-LGL~~~lv---~~L~~~m~i~~---pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k 205 (708)
T KOG0348|consen 133 FTSAAFAS-LGLHPHLV---SHLNTKMKISA---PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK 205 (708)
T ss_pred cccccchh-cCCCHHHH---HHHHHHhccCc---cchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc
Confidence 46678888 99999998 4444 455554 4999999999999999999999999999999999877442
Q ss_pred ---cCCCeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccce-------ecCCCcEEEEcHHHHHHHHhcC-CCCC
Q psy2764 114 ---NHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQ-------INTTASCLVMTTEILRSMLYRG-SDVL 177 (419)
Q Consensus 114 ---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~-~~~l 177 (419)
..|+.+|||+||||||.|+|+.+.++... -|.+.||.. ...+.+|+|+||++|.+.+.+. ...+
T Consensus 206 i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~ 285 (708)
T KOG0348|consen 206 IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKF 285 (708)
T ss_pred ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchhee
Confidence 25789999999999999999999999876 355666543 3356999999999999988774 4568
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcC-------------CCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEec
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLP-------------KEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVST 243 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-------------~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~ 243 (419)
.+++++|+||+|++++-||...+..|+..+. +..|-+++|||+...+. +++. ....+..+. .+.
T Consensus 286 s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~-sLkDpv~I~-ld~ 363 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL-SLKDPVYIS-LDK 363 (708)
T ss_pred eeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc-cccCceeee-ccc
Confidence 8899999999999999999999999988762 24778999999988775 4432 111111111 000
Q ss_pred CCCCcc-ce---EEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhH----H
Q psy2764 244 LKRPVP-LK---HFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNL----F 315 (419)
Q Consensus 244 ~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 315 (419)
...... -. ..+...+..++ .+.+.++. .....+..-..+-. .
T Consensus 364 s~~~~~p~~~a~~ev~~~~~~~~---------l~~~~iPe---------------------qL~qry~vVPpKLRLV~La 413 (708)
T KOG0348|consen 364 SHSQLNPKDKAVQEVDDGPAGDK---------LDSFAIPE---------------------QLLQRYTVVPPKLRLVALA 413 (708)
T ss_pred hhhhcCcchhhhhhcCCcccccc---------cccccCcH---------------------HhhhceEecCCchhHHHHH
Confidence 000000 00 00000000000 00000000 00000111111222 2
Q ss_pred HHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC---------------CCCC-------hhHHHHH-HHHHHHHHHhc
Q psy2764 316 ISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM---------------DFST-------ATEKSKI-HRFFQDSIRNL 372 (419)
Q Consensus 316 ~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~---------------~~~~-------~~~~~~~-~~~r~~~l~~f 372 (419)
..|..........++|||..+.+.++.-+..|.+. |... ...|+.+ +++|..+++.|
T Consensus 414 a~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~F 493 (708)
T KOG0348|consen 414 ALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEF 493 (708)
T ss_pred HHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhh
Confidence 23333344455568999999999999888887653 1111 1134444 88999999999
Q ss_pred CCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHH
Q psy2764 373 QNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLF 413 (419)
Q Consensus 373 ~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f 413 (419)
+.... .||.|||+++||+|+|++++ |...-+++.+-.
T Consensus 494 s~~~~----~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvG 536 (708)
T KOG0348|consen 494 SHSRR----AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVG 536 (708)
T ss_pred ccccc----eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhh
Confidence 97777 79999999999999999997 344445554433
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-37 Score=301.69 Aligned_cols=280 Identities=15% Similarity=0.179 Sum_probs=206.5
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI- 152 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~- 152 (419)
|+|+|.+|++.+++|+|+++++|||+|||++|++++.. .+..+|||+|+++|+.|++..+......+..+.|+...
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~ 88 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKE 88 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 69999999999999999999999999999997776543 35679999999999999999999876666666665432
Q ss_pred ----------cCCCcEEEEcHHHHHHHH--hcCCCCCCCccEEEEeCCcccCCCc--chHHHHHH---HHhcCCCCcEEE
Q psy2764 153 ----------NTTASCLVMTTEILRSML--YRGSDVLRDLEYVIFDEVHYINDSE--RGHVWEEV---LILLPKEVCIVM 215 (419)
Q Consensus 153 ----------~~~~~Iiv~Tp~~l~~~~--~~~~~~l~~~~~lIiDE~h~l~~~~--~~~~~~~i---~~~~~~~~~~l~ 215 (419)
....+|+++||+++.... ........+++++||||||++.+++ +++.+..+ ...+ ++.++++
T Consensus 89 ~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~l~ 167 (470)
T TIGR00614 89 QQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PNVPIMA 167 (470)
T ss_pred HHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CCCceEE
Confidence 234799999999875321 1111146789999999999998876 55555443 2333 4789999
Q ss_pred EeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhh
Q psy2764 216 LSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLE 293 (419)
Q Consensus 216 ~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (419)
+|||+++.. ++.++++...+. ++ .....++. +.. .+...
T Consensus 168 lTAT~~~~~~~di~~~l~l~~~~-~~-~~s~~r~n-l~~---------------~v~~~--------------------- 208 (470)
T TIGR00614 168 LTATASPSVREDILRQLNLKNPQ-IF-CTSFDRPN-LYY---------------EVRRK--------------------- 208 (470)
T ss_pred EecCCCHHHHHHHHHHcCCCCCc-EE-eCCCCCCC-cEE---------------EEEeC---------------------
Confidence 999998764 466666543221 11 11111111 100 00000
Q ss_pred cCCCCCCCCCCCCCCCcchhHHHHHHHHHH-HcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHh
Q psy2764 294 KGGSGGGKLNGPFTRGAEKNLFISFLNYLR-KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRN 371 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~ 371 (419)
.......+.+++. ...++.+||||+|+++|+.++..|...|+.+...|+.+ .++|.++++.
T Consensus 209 -----------------~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~ 271 (470)
T TIGR00614 209 -----------------TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHK 271 (470)
T ss_pred -----------------CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHH
Confidence 0012344555554 34556679999999999999999999999888877666 7899999999
Q ss_pred cCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 372 LQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 372 f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
|++|+. +|||||+++++|||+|+++ +|.....++++..|.|+
T Consensus 272 F~~g~~----~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR 319 (470)
T TIGR00614 272 FQRDEI----QVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGR 319 (470)
T ss_pred HHcCCC----cEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCC
Confidence 999999 9999999999999999765 57778888888888775
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.4e-37 Score=320.09 Aligned_cols=296 Identities=22% Similarity=0.286 Sum_probs=209.1
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---------cCCCeEEEEcccHHHHHHHHHHHHHhc----
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---------NHKTRTIYTSPIKALSNQKYRDFRETF---- 140 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---------~~~~~~lii~Pt~~L~~q~~~~~~~~~---- 140 (419)
|||+|.+|++.+.+|+|++++||||||||++|.+++.... ..+.++|||+||++|+.|+++++.+..
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999888876322 235689999999999999998765321
Q ss_pred -------c-----ccceEeccceec-------CCCcEEEEcHHHHHHHHhcCC--CCCCCccEEEEeCCcccCCCcchHH
Q psy2764 141 -------Q-----DVGLVTGDFQIN-------TTASCLVMTTEILRSMLYRGS--DVLRDLEYVIFDEVHYINDSERGHV 199 (419)
Q Consensus 141 -------~-----~~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~--~~l~~~~~lIiDE~h~l~~~~~~~~ 199 (419)
. .+++.+|+.... ..++|+|+||+++..++.... ..++++++||+||+|.+.+..++..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 1 145678876532 358999999999987775432 2578999999999999988777776
Q ss_pred HHHHHH----hcCCCCcEEEEeeecCChHHHHHHhcCcC----CccEEEEecCCCCccceEEEEeCCcccccceeeeccc
Q psy2764 200 WEEVLI----LLPKEVCIVMLSATVPNTLEFADWVGNTK----KTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREA 271 (419)
Q Consensus 200 ~~~i~~----~~~~~~~~l~~SAT~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (419)
+...+. ..+...|++++|||+++..++++|+.... +..+.++..... .+....... +.
T Consensus 193 l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~-k~~~i~v~~-p~------------ 258 (876)
T PRK13767 193 LSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV-KPFDIKVIS-PV------------ 258 (876)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC-ccceEEEec-cC------------
Confidence 655443 33467899999999999888999987631 111111111100 000000000 00
Q ss_pred cCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC-
Q psy2764 272 EGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM- 350 (419)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~- 350 (419)
...... .........+..+.+.+.. .+++||||||++.|+.++..|+..
T Consensus 259 -~~l~~~---------------------------~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~ 308 (876)
T PRK13767 259 -DDLIHT---------------------------PAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRF 308 (876)
T ss_pred -cccccc---------------------------ccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhc
Confidence 000000 0000112233444444433 456999999999999999999873
Q ss_pred -----CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 351 -----DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 351 -----~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
+.....+|+.+ .++|..+++.|++|.. +++|||+++++|||+|+++ .|.....++++..+.|+
T Consensus 309 ~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i----~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR 383 (876)
T PRK13767 309 PEEYDEDNIGAHHSSLSREVRLEVEEKLKRGEL----KVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGH 383 (876)
T ss_pred hhhccccceeeeeCCCCHHHHHHHHHHHHcCCC----eEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCC
Confidence 23445566655 7899999999999999 9999999999999999875 46677788888888775
No 41
>KOG4284|consensus
Probab=100.00 E-value=3.4e-38 Score=295.82 Aligned_cols=312 Identities=13% Similarity=0.147 Sum_probs=245.5
Q ss_pred cCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCCeEEEEcccH
Q psy2764 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIK 126 (419)
Q Consensus 50 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~~~lii~Pt~ 126 (419)
+.|...+. ..|.+.+|..| |++|..|||.++.+.|+||+|..|+|||++|..++... .....+++|++|||
T Consensus 30 l~l~r~vl---~glrrn~f~~p---tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTR 103 (980)
T KOG4284|consen 30 LALWREVL---LGLRRNAFALP---TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTR 103 (980)
T ss_pred HHHHHHHH---HHHHhhcccCC---CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecch
Confidence 66666666 88899999987 99999999999999999999999999998865544322 33578999999999
Q ss_pred HHHHHHHHHHHHhccc-----cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-C
Q psy2764 127 ALSNQKYRDFRETFQD-----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-S 194 (419)
Q Consensus 127 ~L~~q~~~~~~~~~~~-----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-~ 194 (419)
+++.|+.+.+.+++.. +.++.||+... .+++|+|+||+++..++..+...+..++++|+||||.|.+ .
T Consensus 104 EiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~ 183 (980)
T KOG4284|consen 104 EIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTE 183 (980)
T ss_pred hhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchh
Confidence 9999999999998774 67789987654 3589999999999999999999999999999999998877 5
Q ss_pred cchHHHHHHHHhcCCCCcEEEEeeecCChHH--HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeecccc
Q psy2764 195 ERGHVWEEVLILLPKEVCIVMLSATVPNTLE--FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAE 272 (419)
Q Consensus 195 ~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (419)
.++..+..|+..+|...|++++|||.|...+ +.+++.... -+..-.....-..+.++++..+.
T Consensus 184 sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s------------- 248 (980)
T KOG4284|consen 184 SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCS------------- 248 (980)
T ss_pred hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccC-------------
Confidence 6999999999999999999999999998775 667666521 11111111112223333332222
Q ss_pred CcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCC
Q psy2764 273 GEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDF 352 (419)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~ 352 (419)
+. .+...-+.+...|-.++..-+..++||||+....|+.++..|...|+
T Consensus 249 -------~n------------------------nsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~ 297 (980)
T KOG4284|consen 249 -------PN------------------------NSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGL 297 (980)
T ss_pred -------Cc------------------------chHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC
Confidence 00 01111122345677777777778899999999999999999999999
Q ss_pred CChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 353 STATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 353 ~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
.+...++.| +.+|...++.+|+-.. +|||+||+.+||||-+|++| |..+--+..+..+.|+
T Consensus 298 d~~~ISgaM~Q~~Rl~a~~~lr~f~~----rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgR 365 (980)
T KOG4284|consen 298 DVTFISGAMSQKDRLLAVDQLRAFRV----RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGR 365 (980)
T ss_pred CeEEeccccchhHHHHHHHHhhhceE----EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccc
Confidence 999988777 8899999999997777 99999999999999999998 4455566666666554
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.3e-35 Score=301.48 Aligned_cols=285 Identities=14% Similarity=0.150 Sum_probs=207.8
Q ss_pred CCCC-ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEec
Q psy2764 70 WPFE-LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG 148 (419)
Q Consensus 70 ~~~~-~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g 148 (419)
|+|. |+|+|.++|+.++.|+|+++++|||+|||+||.++++.. +..+|||+|+++|+.++...+....-....+.|
T Consensus 456 FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s 532 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIPAASLSA 532 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3444 799999999999999999999999999999987776543 568999999999999888888776655566666
Q ss_pred cceec-------------CCCcEEEEcHHHHHH--HHhcC---CCCCCCccEEEEeCCcccCCCc--chHHHHHH--HHh
Q psy2764 149 DFQIN-------------TTASCLVMTTEILRS--MLYRG---SDVLRDLEYVIFDEVHYINDSE--RGHVWEEV--LIL 206 (419)
Q Consensus 149 ~~~~~-------------~~~~Iiv~Tp~~l~~--~~~~~---~~~l~~~~~lIiDE~h~l~~~~--~~~~~~~i--~~~ 206 (419)
+.... ...+|+++||+++.. .+... ......+.+|||||||++.+|+ |++.+..+ +..
T Consensus 533 ~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~ 612 (1195)
T PLN03137 533 GMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ 612 (1195)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHH
Confidence 54321 357999999999852 11111 1123458899999999999887 67766653 233
Q ss_pred cCCCCcEEEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHH
Q psy2764 207 LPKEVCIVMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284 (419)
Q Consensus 207 ~~~~~~~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (419)
..++.+++++|||++... ++.+.++.... ........++ .+...+.. .
T Consensus 613 ~fp~vPilALTATAT~~V~eDI~~~L~l~~~--~vfr~Sf~Rp-NL~y~Vv~--k------------------------- 662 (1195)
T PLN03137 613 KFPNIPVLALTATATASVKEDVVQALGLVNC--VVFRQSFNRP-NLWYSVVP--K------------------------- 662 (1195)
T ss_pred hCCCCCeEEEEecCCHHHHHHHHHHcCCCCc--EEeecccCcc-ceEEEEec--c-------------------------
Confidence 334788999999998664 36666654221 1111122222 11111100 0
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHc-CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-H
Q psy2764 285 EVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKS-QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-H 362 (419)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~ 362 (419)
.......+..++... ....+||||+|++.|+.++..|...|+.+...|+.+ .
T Consensus 663 --------------------------~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ 716 (1195)
T PLN03137 663 --------------------------TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDP 716 (1195)
T ss_pred --------------------------chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCH
Confidence 001123444444433 345699999999999999999999999988877777 8
Q ss_pred HHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 363 RFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 363 ~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
++|..++++|++|+. +|||||+++++|||+|++ ++|.....++++..|.|+
T Consensus 717 eeR~~vqe~F~~Gei----~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGR 773 (1195)
T PLN03137 717 AQRAFVQKQWSKDEI----NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 773 (1195)
T ss_pred HHHHHHHHHHhcCCC----cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCC
Confidence 899999999999999 999999999999999965 468888899999888886
No 43
>KOG0327|consensus
Probab=100.00 E-value=5.6e-37 Score=273.06 Aligned_cols=307 Identities=18% Similarity=0.243 Sum_probs=237.6
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEEE
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIY 121 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~li 121 (419)
.|.+ ++|++.|. +.+...||+.| +.+|+.||.++.+|.|+.+++++|+|||.+|..+++... ....++++
T Consensus 27 sfdd-m~L~e~LL---rgiy~yGFekP---SaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qali 99 (397)
T KOG0327|consen 27 SFDD-MNLKESLL---RGIYAYGFEKP---SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALI 99 (397)
T ss_pred hhhh-cCCCHHHH---hHHHhhccCCc---hHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHH
Confidence 3445 88888888 88888888876 999999999999999999999999999988655555432 24578999
Q ss_pred EcccHHHHHHHHHHHHHhccc----cceEeccceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 122 TSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 122 i~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
++|||+|+.|+.+....++.. +..+.|+.... ..++|+|+||+++..++..+....+.++++|+||+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999888888765 33355554432 237999999999999999888888889999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeee
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI 268 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (419)
.++..++...+..+.+.++++.|++++|||.|.... +.+.+.. .+..+.+-.......-+.++++...
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~-~pv~i~vkk~~ltl~gikq~~i~v~---------- 248 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMR-EPVRILVKKDELTLEGIKQFYINVE---------- 248 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhcc-CceEEEecchhhhhhheeeeeeecc----------
Confidence 999999999999999999999999999999998764 4443332 1121111111111111111111100
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~ 348 (419)
...+...+++++. ...+.+|||||++.++.+...|.
T Consensus 249 ------------------------------------------k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~ 284 (397)
T KOG0327|consen 249 ------------------------------------------KEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLR 284 (397)
T ss_pred ------------------------------------------ccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHh
Confidence 1113456777776 44459999999999999999999
Q ss_pred cCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 349 SMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 349 ~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
..++.....++.+ +.+|..++.+|++|.. ++||.|++++||||+..+++ |..-..++.+..+.|.
T Consensus 285 ~~~~~~s~~~~d~~q~~R~~~~~ef~~gss----rvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr 356 (397)
T KOG0327|consen 285 AHGFTVSAIHGDMEQNERDTLMREFRSGSS----RVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGR 356 (397)
T ss_pred hCCceEEEeecccchhhhhHHHHHhhcCCc----eEEeeccccccccchhhcceeeeeccccchhhhhhhcccccc
Confidence 9999988877777 7889999999999999 99999999999999988664 5555577777766665
No 44
>KOG0334|consensus
Probab=100.00 E-value=1.8e-36 Score=300.29 Aligned_cols=323 Identities=20% Similarity=0.229 Sum_probs=247.6
Q ss_pred ecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 31 LKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
...+..+|. |-..|.. .|++..+. ..+++++|..| +++|.+|||+++.|+++|.+|.||||||++|++++.
T Consensus 354 ~v~g~~~pk--pv~sW~q-~gl~~~il---~tlkkl~y~k~---~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmi 424 (997)
T KOG0334|consen 354 KVKGKECPK--PVTSWTQ-CGLSSKIL---ETLKKLGYEKP---TPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMI 424 (997)
T ss_pred eeccCCCCc--ccchHhh-CCchHHHH---HHHHHhcCCCC---cchhhhhcchhccCcceEEeeccCCccchhhhcchh
Confidence 334444444 7788998 99999988 77788999866 999999999999999999999999999999877766
Q ss_pred HHh--------cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHh
Q psy2764 111 LSQ--------NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLY 171 (419)
Q Consensus 111 ~~~--------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~ 171 (419)
... ..|+.+||++|||+|+.|+.+.+.++... +...+|+... ..++.|+||||++...++.
T Consensus 425 rhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~ 504 (997)
T KOG0334|consen 425 RHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILC 504 (997)
T ss_pred hhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHh
Confidence 332 25899999999999999999999998776 3346666543 3459999999999998887
Q ss_pred cCCC---CCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCC
Q psy2764 172 RGSD---VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRP 247 (419)
Q Consensus 172 ~~~~---~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 247 (419)
.+.. .+.++.++|+||||++++.+|.+..-.|+..+++..|++++|||+|+... ++..... .+..+.+.......
T Consensus 505 ~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~-~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 505 ANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLK-KPVEIIVGGRSVVC 583 (997)
T ss_pred hcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEccceeEe
Confidence 7654 45555699999999999999999999999999999999999999998865 5543333 22222211100000
Q ss_pred ccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-cC
Q psy2764 248 VPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-SQ 326 (419)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 326 (419)
....+.+..+. ....++..|.+++.. ..
T Consensus 584 ------------k~V~q~v~V~~---------------------------------------~e~eKf~kL~eLl~e~~e 612 (997)
T KOG0334|consen 584 ------------KEVTQVVRVCA---------------------------------------IENEKFLKLLELLGERYE 612 (997)
T ss_pred ------------ccceEEEEEec---------------------------------------CchHHHHHHHHHHHHHhh
Confidence 11222222111 112233455555532 33
Q ss_pred CCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC-----
Q psy2764 327 NLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG----- 400 (419)
Q Consensus 327 ~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~----- 400 (419)
..++||||.+...|..+.+.|.+.|+.+...|+.. +..|..+++.|++|.. ++|++|++++||+|+.+..
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~----~LLvaTsvvarGLdv~~l~Lvvny 688 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV----NLLVATSVVARGLDVKELILVVNY 688 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc----eEEEehhhhhcccccccceEEEEc
Confidence 56799999999999999999999999988766555 7899999999999999 9999999999999997654
Q ss_pred -CChhhHHHHHHHHhcCcC
Q psy2764 401 -ILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 401 -l~~~~r~~ie~~f~~g~i 418 (419)
.|..-+.+|....+.|.-
T Consensus 689 d~pnh~edyvhR~gRTgra 707 (997)
T KOG0334|consen 689 DFPNHYEDYVHRVGRTGRA 707 (997)
T ss_pred ccchhHHHHHHHhcccccC
Confidence 466777788888887753
No 45
>KOG0350|consensus
Probab=100.00 E-value=4.4e-36 Score=274.45 Aligned_cols=297 Identities=20% Similarity=0.160 Sum_probs=210.7
Q ss_pred cccccccccCCCCccHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHH
Q psy2764 61 AKVPIMAHTWPFELDVFQKQAIIKLE---------EHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKA 127 (419)
Q Consensus 61 ~~l~~~~~~~~~~~~~~Q~~ai~~~~---------~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~ 127 (419)
+.+.+++.+.- .|+|.+++|.++ ..+|+.|.||||||||++|.++|..++. +.-|+|||+||++
T Consensus 150 q~l~k~~is~~---FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 150 QLLVKMAISRL---FPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHHhhcccc---cchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHH
Confidence 44677777764 789999999873 3689999999999999999888887654 3479999999999
Q ss_pred HHHHHHHHHHHhccccce----Eeccceec------------CCCcEEEEcHHHHHHHHhc-CCCCCCCccEEEEeCCcc
Q psy2764 128 LSNQKYRDFRETFQDVGL----VTGDFQIN------------TTASCLVMTTEILRSMLYR-GSDVLRDLEYVIFDEVHY 190 (419)
Q Consensus 128 L~~q~~~~~~~~~~~~~~----~~g~~~~~------------~~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIiDE~h~ 190 (419)
|+.|++..|.++....|+ +.|..+.. ...+|+|+||++|.+.+.. ....+++++++||||||+
T Consensus 227 L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred HHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH
Confidence 999999999999987554 44443321 1259999999999999984 567899999999999999
Q ss_pred cCCCcchHHHHHHHHhcCC----------------------------------CCcEEEEeeecCChH-HHHHHhcCcCC
Q psy2764 191 INDSERGHVWEEVLILLPK----------------------------------EVCIVMLSATVPNTL-EFADWVGNTKK 235 (419)
Q Consensus 191 l~~~~~~~~~~~i~~~~~~----------------------------------~~~~l~~SAT~~~~~-~~~~~l~~~~~ 235 (419)
+++..|...+..++..++. ..+.+.+|||++..- .+.++ ....+
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~l~~P 385 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-TLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-hcCCC
Confidence 9998888887777665421 123556666665432 22221 11111
Q ss_pred ccEEEEec----CCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcc
Q psy2764 236 TKVYVVST----LKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAE 311 (419)
Q Consensus 236 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (419)
.-..+... ..-|..+.+..+. ...
T Consensus 386 rl~~v~~~~~~ryslp~~l~~~~vv----------------------------------------------------~~~ 413 (620)
T KOG0350|consen 386 RLFHVSKPLIGRYSLPSSLSHRLVV----------------------------------------------------TEP 413 (620)
T ss_pred ceEEeecccceeeecChhhhhceee----------------------------------------------------ccc
Confidence 11111100 0001111111110 011
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh----cCCCCChhHH-HHHHHHHHHHHHhcCCcCCCCchhhHHH
Q psy2764 312 KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL----SMDFSTATEK-SKIHRFFQDSIRNLQNEDDRALPQVKRL 386 (419)
Q Consensus 312 ~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~----~~~~~~~~~~-~~~~~~r~~~l~~f~~g~~~~~~~vlv~ 386 (419)
.-.--.+..++...+..++|+|+++.+.+.+++..|. ...+...... +...+.|.+.+++|..|+. ++|||
T Consensus 414 ~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i----~vLIc 489 (620)
T KOG0350|consen 414 KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDI----NVLIC 489 (620)
T ss_pred ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCc----eEEEe
Confidence 1112356666677888889999999999999999887 2344444433 3347789999999999999 99999
Q ss_pred HHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 387 EQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 387 t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
+|+++||||+-++ ++|...+.+|.+..+.++
T Consensus 490 SD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTAR 526 (620)
T KOG0350|consen 490 SDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTAR 526 (620)
T ss_pred hhhhhcCCcccccceEeecCCCchhhHHHHhhccccc
Confidence 9999999999766 579999999999877653
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.9e-36 Score=297.50 Aligned_cols=293 Identities=22% Similarity=0.261 Sum_probs=220.3
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH-hc-------CCCeEEEEcccHHHHHHHHHHHHHhccc---
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QN-------HKTRTIYTSPIKALSNQKYRDFRETFQD--- 142 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~-------~~~~~lii~Pt~~L~~q~~~~~~~~~~~--- 142 (419)
|||.|.+|||.+.+|+|++++||||||||+++.+++... .+ .+-.+|||.|.|+|.+++..++..+...
T Consensus 23 ~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~ 102 (814)
T COG1201 23 LTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGI 102 (814)
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999999999999999999999999887632 22 2468999999999999999999987654
Q ss_pred -cceEeccceec-------CCCcEEEEcHHHHHHHHhcC--CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC---C
Q psy2764 143 -VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRG--SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP---K 209 (419)
Q Consensus 143 -~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~--~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~---~ 209 (419)
+.+.+|+++.. ..+||+|+|||.|.-++... ...+.+++++||||+|.+.+..++.++...+.++. .
T Consensus 103 ~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~ 182 (814)
T COG1201 103 EVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG 182 (814)
T ss_pred ccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc
Confidence 67799987543 34899999999998777653 34789999999999999988788877655554432 2
Q ss_pred CCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHH
Q psy2764 210 EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCR 289 (419)
Q Consensus 210 ~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (419)
+.|.+|+|||..+..++++|+.........+-.....+..+... .... ...
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~--~p~~------------~~~--------------- 233 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVI--SPVE------------DLI--------------- 233 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEE--ecCC------------ccc---------------
Confidence 89999999999999999999998542111111111111111111 1110 000
Q ss_pred hhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCC-CCChhHHHHH-HHHHHH
Q psy2764 290 KQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMD-FSTATEKSKI-HRFFQD 367 (419)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~-~~~~~~~~~~-~~~r~~ 367 (419)
+........+..+.+...++. .+|||+|||..|+.++..|+..+ .....+|+.+ .+.|..
T Consensus 234 ----------------~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~ 295 (814)
T COG1201 234 ----------------YDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLE 295 (814)
T ss_pred ----------------cccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHH
Confidence 001122345567777776666 49999999999999999999986 5556677655 889999
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
+.++|++|+. +++|||..++-|||+-++++ |...-..+++..+.|+
T Consensus 296 vE~~lk~G~l----ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgH 347 (814)
T COG1201 296 VEERLKEGEL----KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347 (814)
T ss_pred HHHHHhcCCc----eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhcccccc
Confidence 9999999998 99999999999999999987 4444455665555554
No 47
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.9e-35 Score=295.81 Aligned_cols=282 Identities=15% Similarity=0.162 Sum_probs=207.0
Q ss_pred CCC-ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 71 PFE-LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 71 ~~~-~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
+|+ |+|+|+++++.++.|+++++++|||+|||++|++++... ...+|||+|+++|+.|+.+.+......+..+.+.
T Consensus 22 G~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~ 98 (607)
T PRK11057 22 GYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVAAACLNST 98 (607)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 443 699999999999999999999999999999977665533 4579999999999999999999876655555554
Q ss_pred cee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc--chHHHHHH---HHhcCCCCcE
Q psy2764 150 FQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE--RGHVWEEV---LILLPKEVCI 213 (419)
Q Consensus 150 ~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~--~~~~~~~i---~~~~~~~~~~ 213 (419)
... ....+++++||+++............+++++||||||++.+++ +++.+..+ .... ++.++
T Consensus 99 ~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~ 177 (607)
T PRK11057 99 QTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPF 177 (607)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcE
Confidence 321 1347899999999873222222334578999999999998876 55555444 2333 47899
Q ss_pred EEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhh
Q psy2764 214 VMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQ 291 (419)
Q Consensus 214 l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (419)
+++|||++... ++...++...+ ........++. +... .+.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~--~~~~~~~~r~n-l~~~--------------v~~--------------------- 219 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDP--LIQISSFDRPN-IRYT--------------LVE--------------------- 219 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCe--EEEECCCCCCc-ceee--------------eee---------------------
Confidence 99999998765 35555544211 11111111111 1000 000
Q ss_pred hhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHH
Q psy2764 292 LEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIR 370 (419)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~ 370 (419)
.......+...+....+.++||||+|+++|+.++..|...|+.+...|+.+ .++|.++++
T Consensus 220 -------------------~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 220 -------------------KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred -------------------ccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 001123556666666778899999999999999999999999888877666 789999999
Q ss_pred hcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 371 NLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 371 ~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
.|++|+. +|+|||+++++|||+|+++ +|.....++++..|.|+
T Consensus 281 ~F~~g~~----~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 281 AFQRDDL----QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred HHHCCCC----CEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccC
Confidence 9999998 9999999999999998764 67788889998888775
No 48
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=275.20 Aligned_cols=286 Identities=27% Similarity=0.356 Sum_probs=232.3
Q ss_pred cCCCccccccccccccccccCCCCccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHH-HHHHhcCCCeEEEEcccHH
Q psy2764 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYA-IALSQNHKTRTIYTSPIKA 127 (419)
Q Consensus 50 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~-i~~~~~~~~~~lii~Pt~~ 127 (419)
+++++.+. +-|...|++ ++.|+|..|+.. +++|.|.+++++|+||||+++.++ ++.++..+.+-|+++|..+
T Consensus 199 Ldipe~fk---~~lk~~G~~---eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVA 272 (830)
T COG1202 199 LDIPEKFK---RMLKREGIE---ELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVA 272 (830)
T ss_pred cCCcHHHH---HHHHhcCcc---eecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHH
Confidence 77777776 556665554 389999999998 689999999999999999999887 8888888999999999999
Q ss_pred HHHHHHHHHHHhccccc----eEeccce-----------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 128 LSNQKYRDFRETFQDVG----LVTGDFQ-----------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 128 L~~q~~~~~~~~~~~~~----~~~g~~~-----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
||+|-++.|+......| +-.|... ....+||||+|++-+..++..+ ..+.++..+||||+|.+-
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~ 351 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLE 351 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeecc
Confidence 99999999998776533 3344322 2245899999999999888777 678999999999999998
Q ss_pred CCcchHHHHHHHHhcC---CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCc-ccccceeee
Q psy2764 193 DSERGHVWEEVLILLP---KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV-LEKNQLFLI 268 (419)
Q Consensus 193 ~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 268 (419)
+..+++-+..++.+++ +..|++++|||..|+.++++.++. ..+.+..+|+|++.+++.... ..+.
T Consensus 352 deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~~e~eK~----- 420 (830)
T COG1202 352 DEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFARNESEKW----- 420 (830)
T ss_pred chhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeecCchHHH-----
Confidence 8889998888886654 689999999999999999999988 355678999999877655432 1111
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHH-----HHHcCCCCEEEEEcchhhHHHH
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNY-----LRKSQNLPVVLFTLSRKRCDQN 343 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~~~~LIF~~t~~~~~~l 343 (419)
+++..|++. ......+++|||++||..|.++
T Consensus 421 --------------------------------------------~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~l 456 (830)
T COG1202 421 --------------------------------------------DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHEL 456 (830)
T ss_pred --------------------------------------------HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHH
Confidence 111122211 1234457899999999999999
Q ss_pred HHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 344 AANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 344 ~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
|..|...|+.+...|+.+ ..+|+.+...|.+++. .++|+|-+++.|+|||....
T Consensus 457 A~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l----~~VVTTAAL~AGVDFPASQV 511 (830)
T COG1202 457 ADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL----AAVVTTAALAAGVDFPASQV 511 (830)
T ss_pred HHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc----ceEeehhhhhcCCCCchHHH
Confidence 999999999998866666 7889999999999999 89999999999999997654
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.4e-35 Score=294.66 Aligned_cols=283 Identities=17% Similarity=0.217 Sum_probs=210.8
Q ss_pred CCCC-ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEec
Q psy2764 70 WPFE-LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG 148 (419)
Q Consensus 70 ~~~~-~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g 148 (419)
++|+ |+|+|.++++.++.|+|+++++|||+|||++|.+++.. .+..++||+|+++|+.|+.+.+..+...+..++|
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s 85 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNS 85 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3444 79999999999999999999999999999997766543 3567899999999999999999998766666777
Q ss_pred cceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc--chHHHHHHHH---hcCCCCc
Q psy2764 149 DFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE--RGHVWEEVLI---LLPKEVC 212 (419)
Q Consensus 149 ~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~--~~~~~~~i~~---~~~~~~~ 212 (419)
+.... ...+|+++||+++.+..........+++++||||||++.+++ +++.+..+.. .++ +.+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~ 164 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVP 164 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCC
Confidence 65322 357899999999875433333445689999999999998765 6666655543 333 456
Q ss_pred EEEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHh
Q psy2764 213 IVMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRK 290 (419)
Q Consensus 213 ~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (419)
++++|||.+... ++.++++..... .+ .....++. +...+..
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~-~~-~~~~~r~n-l~~~v~~---------------------------------- 207 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADAN-EF-ITSFDRPN-LRFSVVK---------------------------------- 207 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCC-eE-ecCCCCCC-cEEEEEe----------------------------------
Confidence 999999998665 467777653222 11 11122221 1111000
Q ss_pred hhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHH
Q psy2764 291 QLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSI 369 (419)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l 369 (419)
.......+.+.+....+.++||||+|++.|+.+++.|...|+.+...|+.+ .++|..++
T Consensus 208 --------------------~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 208 --------------------KNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred --------------------CCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 001124556666666667899999999999999999999999887766655 78999999
Q ss_pred HhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 370 RNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 370 ~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
+.|++|.. +|+|||+++++|||+|++ ++|.....++++..+.|+
T Consensus 268 ~~F~~g~~----~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR 317 (591)
T TIGR01389 268 EDFLYDDV----KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR 317 (591)
T ss_pred HHHHcCCC----cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccC
Confidence 99999998 999999999999998855 567778888888888775
No 50
>KOG0337|consensus
Probab=100.00 E-value=4.4e-36 Score=269.15 Aligned_cols=303 Identities=18% Similarity=0.200 Sum_probs=232.7
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCe
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTR 118 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~ 118 (419)
...|.. +||+..+. +++.+-||..| ||+|++.+|.++++++++..|-||||||.+|++++...++ .+.+
T Consensus 20 ~g~fqs-mgL~~~v~---raI~kkg~~~p---tpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~R 92 (529)
T KOG0337|consen 20 SGGFQS-MGLDYKVL---RAIHKKGFNTP---TPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLR 92 (529)
T ss_pred CCCccc-cCCCHHHH---HHHHHhhcCCC---CchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccc
Confidence 455666 99998888 99999999987 9999999999999999999999999999887777664433 4569
Q ss_pred EEEEcccHHHHHHHHHHHHHhccc----cceEeccce-------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeC
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ-------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDE 187 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~-------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE 187 (419)
++++.||++|+.|+.+.++.+... ..+++|+.+ ...++|||++||+++..+...-...++.+.+||+||
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 999999999999999999998875 333555433 345799999999999877766667889999999999
Q ss_pred CcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCccccccee
Q psy2764 188 VHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLF 266 (419)
Q Consensus 188 ~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (419)
+|.++..+|.+.+..++..++.+.|.++||||+|+.. ++++ - ....|..++.-+-..-.......+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fak-a------------Gl~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAK-A------------GLVPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHH-c------------cCCCCceEEeehhhhcchhhhhhe
Confidence 9999999999999999999999999999999999774 4443 1 223333332111000000011111
Q ss_pred eeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHc-CCCCEEEEEcchhhHHHHHH
Q psy2764 267 LIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKS-QNLPVVLFTLSRKRCDQNAA 345 (419)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~LIF~~t~~~~~~l~~ 345 (419)
..+ ...++..+|+.++... ..++++|||.|+.+++.+..
T Consensus 240 ~~~----------------------------------------~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ 279 (529)
T KOG0337|consen 240 FRV----------------------------------------RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRG 279 (529)
T ss_pred eee----------------------------------------ccHHHHHHHHHHHhccccccceeEEecccchHHHHHH
Confidence 111 1233455666666443 33579999999999999999
Q ss_pred HhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhcc------CCCChhhHHHH
Q psy2764 346 NLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHH------SGILPILKEIV 409 (419)
Q Consensus 346 ~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~------~~l~~~~r~~i 409 (419)
.|+..|+.+...++.+ +..|...+.+|+.+.. .++|.||+++||+|||- -++|+..+.++
T Consensus 280 ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~----~~lvvTdvaaRG~diplldnvinyd~p~~~klFv 346 (529)
T KOG0337|consen 280 LLRDFGGEGSDIYSSLDQEARKINGRDFRGRKT----SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFV 346 (529)
T ss_pred HHHhcCCCccccccccChHhhhhccccccCCcc----ceEEEehhhhccCCCccccccccccCCCCCceEE
Confidence 9999999988877766 6778889999998888 99999999999999984 34555555443
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.4e-33 Score=290.22 Aligned_cols=280 Identities=18% Similarity=0.228 Sum_probs=196.4
Q ss_pred ccccCCCCccHHHHHHHHHHhcC------CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 66 MAHTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 66 ~~~~~~~~~~~~Q~~ai~~~~~~------~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
+.-.+||+||+.|.+||+.+..+ +|.+++||||+|||.+|+.++......+.+++|++||++||.|+++.++++
T Consensus 444 ~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 444 FEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 33457888999999999999664 799999999999999998888777677899999999999999999999998
Q ss_pred ccc----cceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHH
Q psy2764 140 FQD----VGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL 204 (419)
Q Consensus 140 ~~~----~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~ 204 (419)
+.. +++++|..+. ...++|+|+||..+ .....+++++++||||+|++. ......+
T Consensus 524 ~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg-----v~~~~~L 593 (926)
T TIGR00580 524 FANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG-----VKQKEKL 593 (926)
T ss_pred hccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc-----hhHHHHH
Confidence 765 4456665431 12589999999533 344568899999999999863 2233455
Q ss_pred HhcCCCCcEEEEeeecCCh-HHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHH
Q psy2764 205 ILLPKEVCIVMLSATVPNT-LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAA 283 (419)
Q Consensus 205 ~~~~~~~~~l~~SAT~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (419)
..++.++|+++||||+.+. ..+. ..+.. ...+ +........++..++...
T Consensus 594 ~~~~~~~~vL~~SATpiprtl~~~-l~g~~-d~s~-I~~~p~~R~~V~t~v~~~-------------------------- 644 (926)
T TIGR00580 594 KELRTSVDVLTLSATPIPRTLHMS-MSGIR-DLSI-IATPPEDRLPVRTFVMEY-------------------------- 644 (926)
T ss_pred HhcCCCCCEEEEecCCCHHHHHHH-HhcCC-CcEE-EecCCCCccceEEEEEec--------------------------
Confidence 6667789999999996433 2222 11211 1111 111111111222211100
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC--CCCChhHHHHH
Q psy2764 284 KEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM--DFSTATEKSKI 361 (419)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~--~~~~~~~~~~~ 361 (419)
....+...+...+. .+++++||||+++.++.+++.|.+. ++.....|+.+
T Consensus 645 --------------------------~~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m 696 (926)
T TIGR00580 645 --------------------------DPELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQM 696 (926)
T ss_pred --------------------------CHHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 00111123333332 3467999999999999999999985 56666666666
Q ss_pred -HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChh-------hHHHHHHHHhcC
Q psy2764 362 -HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPI-------LKEIVEMLFQKG 416 (419)
Q Consensus 362 -~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~-------~r~~ie~~f~~g 416 (419)
.++|.+++++|++|+. +|||||+++++|||+|++++... .-.+++...|.|
T Consensus 697 ~~~eRe~im~~F~~Gk~----~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvG 755 (926)
T TIGR00580 697 TENELEEVMLEFYKGEF----QVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVG 755 (926)
T ss_pred CHHHHHHHHHHHHcCCC----CEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCC
Confidence 7899999999999999 99999999999999999987531 234555555544
No 52
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.8e-33 Score=294.68 Aligned_cols=261 Identities=14% Similarity=0.088 Sum_probs=184.0
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcccc----ce
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV----GL 145 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~----~~ 145 (419)
.+++|+++|+++++.++.|+|++++||||+|||..++..+..+..++.+++||+||++|+.|+++.++++.... ..
T Consensus 77 ~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~ 156 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKI 156 (1176)
T ss_pred cCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEE
Confidence 34568999999999999999999999999999975444444455568999999999999999999999987753 33
Q ss_pred Eecccee-------------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-----------Ccch-HHH
Q psy2764 146 VTGDFQI-------------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-----------SERG-HVW 200 (419)
Q Consensus 146 ~~g~~~~-------------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-----------~~~~-~~~ 200 (419)
+.|+... ...++|+|+||+++.+.+. .....+++++|+||||++++ .||. ..+
T Consensus 157 ~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 157 LYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHH
Confidence 4443221 1348999999999988765 23455699999999999886 3453 456
Q ss_pred HHHHHhcCC------------------------CCcEEEEeeecCCh-HHHHHHhcCcCCccEEEEecCCCCccceEEEE
Q psy2764 201 EEVLILLPK------------------------EVCIVMLSATVPNT-LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 255 (419)
Q Consensus 201 ~~i~~~~~~------------------------~~~~l~~SAT~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (419)
+.++..++. ..|++++|||++.. ... ..+... ..+.+.........+.+.++
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-~l~~~l--l~~~v~~~~~~~rnI~~~yi 311 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-KLFREL--LGFEVGSPVFYLRNIVDSYI 311 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-HHhhcc--ceEEecCcccccCCceEEEE
Confidence 666666543 68999999999753 331 111110 00000000000001111111
Q ss_pred eCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEc
Q psy2764 256 VGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTL 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~ 335 (419)
... +....+.+++...+ .++||||+
T Consensus 312 ------------~~~------------------------------------------~k~~~L~~ll~~l~-~~~LIFv~ 336 (1176)
T PRK09401 312 ------------VDE------------------------------------------DSVEKLVELVKRLG-DGGLIFVP 336 (1176)
T ss_pred ------------Ecc------------------------------------------cHHHHHHHHHHhcC-CCEEEEEe
Confidence 000 11234555554433 46999999
Q ss_pred chhh---HHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHH----HHHHhhhhhhcc
Q psy2764 336 SRKR---CDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRL----EQLLKNGIGVHH 398 (419)
Q Consensus 336 t~~~---~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~----t~~l~~GIDi~~ 398 (419)
++.. |+++++.|...|+.+...|+.+ .+.+++|++|+. +|||+ ||+++||||+|+
T Consensus 337 t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----~~~l~~F~~G~~----~VLVatas~tdv~aRGIDiP~ 398 (1176)
T PRK09401 337 SDKGKEYAEELAEYLEDLGINAELAISGF----ERKFEKFEEGEV----DVLVGVASYYGVLVRGIDLPE 398 (1176)
T ss_pred cccChHHHHHHHHHHHHCCCcEEEEeCcH----HHHHHHHHCCCC----CEEEEecCCCCceeecCCCCc
Confidence 9887 9999999999999988877766 234699999999 99999 699999999998
No 53
>KOG0344|consensus
Probab=100.00 E-value=4.2e-34 Score=267.37 Aligned_cols=307 Identities=19% Similarity=0.236 Sum_probs=229.3
Q ss_pred cCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh--------cCCCeEEE
Q psy2764 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--------NHKTRTIY 121 (419)
Q Consensus 50 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~--------~~~~~~li 121 (419)
+..++.+. +.+...+|..| +|+|.+|+|.++.+++++.+||||+|||++|.+++...+ ..+-+++|
T Consensus 141 ~~~~~~ll---~nl~~~~F~~P---t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~I 214 (593)
T KOG0344|consen 141 YSMNKRLL---ENLQELGFDEP---TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALI 214 (593)
T ss_pred hhhcHHHH---HhHhhCCCCCC---CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEE
Confidence 44455554 67777777766 999999999999999999999999999999888876332 24579999
Q ss_pred EcccHHHHHHHHHHHHHhc--cccce----Eeccc--------eecCCCcEEEEcHHHHHHHHhcCC--CCCCCccEEEE
Q psy2764 122 TSPIKALSNQKYRDFRETF--QDVGL----VTGDF--------QINTTASCLVMTTEILRSMLYRGS--DVLRDLEYVIF 185 (419)
Q Consensus 122 i~Pt~~L~~q~~~~~~~~~--~~~~~----~~g~~--------~~~~~~~Iiv~Tp~~l~~~~~~~~--~~l~~~~~lIi 185 (419)
+.|||+|+.|++..+.++. ...+. +.... .....++|+|+||.++...+..+. ..+..+.++|+
T Consensus 215 l~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~ 294 (593)
T KOG0344|consen 215 LSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVV 294 (593)
T ss_pred ecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEee
Confidence 9999999999999999998 33222 22221 112348999999999999888865 67889999999
Q ss_pred eCCcccCCC-cchHHHHHHHHhcC-CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCccccc
Q psy2764 186 DEVHYINDS-ERGHVWEEVLILLP-KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKN 263 (419)
Q Consensus 186 DE~h~l~~~-~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (419)
||+|++++. .+..++..+++.+. +++.+-+||||++..++ +|...+......+... .++... ....
T Consensus 295 dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VE--E~~~~i~~~~~~vivg-~~~sa~---------~~V~ 362 (593)
T KOG0344|consen 295 DEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVE--EWAELIKSDLKRVIVG-LRNSAN---------ETVD 362 (593)
T ss_pred chHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHH--HHHHHhhccceeEEEe-cchhHh---------hhhh
Confidence 999999988 88888988888776 57888999999876655 4544422111111111 111100 0111
Q ss_pred ceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHH
Q psy2764 264 QLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQN 343 (419)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l 343 (419)
+....+ .....++-++.+.+...-..++|||+.+.++|..|
T Consensus 363 QelvF~---------------------------------------gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 363 QELVFC---------------------------------------GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQL 403 (593)
T ss_pred hhheee---------------------------------------ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHH
Confidence 111111 11233456788888888889999999999999999
Q ss_pred HHHh-hcCCCCChhHHHH-HHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhc
Q psy2764 344 AANL-LSMDFSTATEKSK-IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQK 415 (419)
Q Consensus 344 ~~~L-~~~~~~~~~~~~~-~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~ 415 (419)
...| .-.+++....|++ .+.+|.+.+++||.|+. ++|+||++++||||+..++| |...-.+|.+..+.
T Consensus 404 ~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I----wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRt 479 (593)
T KOG0344|consen 404 FEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI----WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRT 479 (593)
T ss_pred HHHhhhccCcceeeEecccchhHHHHHHHHHhccCe----eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhcc
Confidence 9999 6667777776666 48899999999999999 99999999999999999887 55666677766655
Q ss_pred Cc
Q psy2764 416 GL 417 (419)
Q Consensus 416 g~ 417 (419)
|+
T Consensus 480 gR 481 (593)
T KOG0344|consen 480 GR 481 (593)
T ss_pred CC
Confidence 53
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.3e-33 Score=292.61 Aligned_cols=282 Identities=18% Similarity=0.228 Sum_probs=197.5
Q ss_pred cccccCCCCccHHHHHHHHHHhcC------CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 65 IMAHTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 65 ~~~~~~~~~~~~~Q~~ai~~~~~~------~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
++.-.+||+||+.|.+||+.+..+ +|++++||||+|||.+|+.++......+.+++|++||++||.|+++.+.+
T Consensus 592 ~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHH
Confidence 344567889999999999998766 89999999999999998777766666789999999999999999999998
Q ss_pred hccc----cceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHH
Q psy2764 139 TFQD----VGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203 (419)
Q Consensus 139 ~~~~----~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i 203 (419)
.+.. +..++|..+. ...++|+|+||+.+. ....+++++++||||+|++. .. ....
T Consensus 672 ~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG---~~--~~e~ 741 (1147)
T PRK10689 672 RFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFG---VR--HKER 741 (1147)
T ss_pred hhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcc---hh--HHHH
Confidence 7764 4456664322 135799999997542 33457889999999999973 22 2334
Q ss_pred HHhcCCCCcEEEEeeecCCh-HHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhH
Q psy2764 204 LILLPKEVCIVMLSATVPNT-LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLA 282 (419)
Q Consensus 204 ~~~~~~~~~~l~~SAT~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (419)
+..++.++|+++||||+.+. ..++... ..... .+........++..+.....
T Consensus 742 lk~l~~~~qvLl~SATpiprtl~l~~~g-l~d~~--~I~~~p~~r~~v~~~~~~~~------------------------ 794 (1147)
T PRK10689 742 IKAMRADVDILTLTATPIPRTLNMAMSG-MRDLS--IIATPPARRLAVKTFVREYD------------------------ 794 (1147)
T ss_pred HHhcCCCCcEEEEcCCCCHHHHHHHHhh-CCCcE--EEecCCCCCCCceEEEEecC------------------------
Confidence 56677899999999997543 3333221 11111 11111111112221111000
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC--CCCChhHHHH
Q psy2764 283 AKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM--DFSTATEKSK 360 (419)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~--~~~~~~~~~~ 360 (419)
.......+...+. .+++++||||+++.++.+++.|... +......|+.
T Consensus 795 ----------------------------~~~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~ 844 (1147)
T PRK10689 795 ----------------------------SLVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 (1147)
T ss_pred ----------------------------cHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 0001122222222 3456999999999999999999886 5555555666
Q ss_pred H-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh-------hhHHHHHHHHhcCc
Q psy2764 361 I-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP-------ILKEIVEMLFQKGL 417 (419)
Q Consensus 361 ~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~-------~~r~~ie~~f~~g~ 417 (419)
+ .++|.+++.+|++|+. +|||||+++++|||+|++++.. ..-++++...|.|+
T Consensus 845 m~q~eRe~im~~Fr~Gk~----~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR 905 (1147)
T PRK10689 845 MRERELERVMNDFHHQRF----NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 (1147)
T ss_pred CCHHHHHHHHHHHHhcCC----CEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCC
Confidence 6 7889999999999999 9999999999999999999865 22346666666554
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.9e-33 Score=293.15 Aligned_cols=289 Identities=22% Similarity=0.219 Sum_probs=193.6
Q ss_pred EEcCCCCChhHHHHHHHHH-Hhc------------CCCeEEEEcccHHHHHHHHHHHHHhc----------------ccc
Q psy2764 93 VTAHTSAGKTVIAEYAIAL-SQN------------HKTRTIYTSPIKALSNQKYRDFRETF----------------QDV 143 (419)
Q Consensus 93 v~apTGsGKT~~~~~~i~~-~~~------------~~~~~lii~Pt~~L~~q~~~~~~~~~----------------~~~ 143 (419)
|+||||||||++|.++++. +.. .+.++|||+|+++|+.|+++.++... -.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999887652 221 35789999999999999999987411 126
Q ss_pred ceEeccceec-------CCCcEEEEcHHHHHHHHhcC-CCCCCCccEEEEeCCcccCCCcchHH----HHHHHHhcCCCC
Q psy2764 144 GLVTGDFQIN-------TTASCLVMTTEILRSMLYRG-SDVLRDLEYVIFDEVHYINDSERGHV----WEEVLILLPKEV 211 (419)
Q Consensus 144 ~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~-~~~l~~~~~lIiDE~h~l~~~~~~~~----~~~i~~~~~~~~ 211 (419)
+.++|+++.. ..++|+|+||++|..++... ...++++++|||||+|.+.+..++.. ++++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 6788987543 35899999999999877543 35789999999999999987656554 445555566789
Q ss_pred cEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhh
Q psy2764 212 CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQ 291 (419)
Q Consensus 212 ~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (419)
|+|++|||+++..++++|++...+..++ .....++..+...+ .... ..+... ... .....
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~v-p~~d--~~~~~~-~~~--~~~~~------------- 220 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVV-NPPAMRHPQIRIVV-PVAN--MDDVSS-VAS--GTGED------------- 220 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEE-CCCCCcccceEEEE-ecCc--hhhccc-ccc--ccccc-------------
Confidence 9999999999998999999863332221 12222333333221 1100 000000 000 00000
Q ss_pred hhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCC--------------------
Q psy2764 292 LEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMD-------------------- 351 (419)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~-------------------- 351 (419)
............+...+++.+. ...++||||||++.|+.++..|.+..
T Consensus 221 ----------~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1490)
T PRK09751 221 ----------SHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFEST 288 (1490)
T ss_pred ----------cchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhc
Confidence 0000000001111122333332 34569999999999999999997641
Q ss_pred -------------CCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHH
Q psy2764 352 -------------FSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEM 411 (419)
Q Consensus 352 -------------~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~ 411 (419)
+....+|+.+ +++|..+.+.|++|.. +++|||+.+++|||+++++ .|...-.+++.
T Consensus 289 ~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~L----rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQR 364 (1490)
T PRK09751 289 SGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGEL----RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQR 364 (1490)
T ss_pred cccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCc----eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHH
Confidence 0122355555 8899999999999999 9999999999999999766 47777788888
Q ss_pred HHhcCc
Q psy2764 412 LFQKGL 417 (419)
Q Consensus 412 ~f~~g~ 417 (419)
..+.|+
T Consensus 365 iGRAGR 370 (1490)
T PRK09751 365 IGRAGH 370 (1490)
T ss_pred hCCCCC
Confidence 888775
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.8e-32 Score=278.50 Aligned_cols=279 Identities=15% Similarity=0.236 Sum_probs=193.8
Q ss_pred ccCCCCccHHHHHHHHHHhcC------CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 68 HTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 68 ~~~~~~~~~~Q~~ai~~~~~~------~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
...||+||++|++|++.+..+ .+++++||||||||++|++++......+.+++|++||++||.|+++.+++++.
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 457899999999999998665 48999999999999999999887777899999999999999999999999876
Q ss_pred c----cceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh
Q psy2764 142 D----VGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206 (419)
Q Consensus 142 ~----~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~ 206 (419)
. +++++|+.+. ...++|+|+||+.+. ....+++++++|+||+|++.... ...+..
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE~Hrfg~~q-----r~~l~~ 405 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDEQHRFGVEQ-----RLALRE 405 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEechhhhhHHH-----HHHHHh
Confidence 4 6678887652 125899999998773 23457899999999999874322 223333
Q ss_pred cCCCCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecC-CCCccceEEEEeCCcccccceeeeccccCcccchhhhHHH
Q psy2764 207 LPKEVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTL-KRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284 (419)
Q Consensus 207 ~~~~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (419)
....+++++||||+.... .+.. .+.. .+..+... ....++.......
T Consensus 406 ~~~~~~iL~~SATp~prtl~~~~-~g~~---~~s~i~~~p~~r~~i~~~~~~~--------------------------- 454 (681)
T PRK10917 406 KGENPHVLVMTATPIPRTLAMTA-YGDL---DVSVIDELPPGRKPITTVVIPD--------------------------- 454 (681)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHH-cCCC---ceEEEecCCCCCCCcEEEEeCc---------------------------
Confidence 455799999999975332 2222 2211 11111110 0011121111100
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcch--------hhHHHHHHHhhcC--CCCC
Q psy2764 285 EVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSR--------KRCDQNAANLLSM--DFST 354 (419)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~--------~~~~~l~~~L~~~--~~~~ 354 (419)
......++.+.+.+ ..+.+++|||+.+ ..++.+++.|... ++..
T Consensus 455 ------------------------~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v 508 (681)
T PRK10917 455 ------------------------SRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRV 508 (681)
T ss_pred ------------------------ccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcE
Confidence 01112233444443 3456799999964 3456777777765 3455
Q ss_pred hhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh-------hhHHHHHHHHhcCc
Q psy2764 355 ATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP-------ILKEIVEMLFQKGL 417 (419)
Q Consensus 355 ~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~-------~~r~~ie~~f~~g~ 417 (419)
...|+.+ .++|++++++|++|+. +|||||+++++|||+|++++.. ..-.+++...|-|+
T Consensus 509 ~~lHG~m~~~eR~~i~~~F~~g~~----~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR 575 (681)
T PRK10917 509 GLLHGRMKPAEKDAVMAAFKAGEI----DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGR 575 (681)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCC----CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccC
Confidence 5566665 8899999999999999 9999999999999999988732 23445555555553
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-32 Score=275.73 Aligned_cols=292 Identities=12% Similarity=0.095 Sum_probs=184.6
Q ss_pred CCccHHHHHHHHHHhcCC-cEEEEcCCCCChhHHHHHHHHHH--hcCCC-eEEEEcccHHHHHHHHHHHHHhccc-----
Q psy2764 72 FELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIALS--QNHKT-RTIYTSPIKALSNQKYRDFRETFQD----- 142 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~-~~iv~apTGsGKT~~~~~~i~~~--~~~~~-~~lii~Pt~~L~~q~~~~~~~~~~~----- 142 (419)
|+|+|+|.++++.++.|+ ++++++|||||||.++....... ....+ ++++++|||+|+.|+++.+.++...
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~ 93 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVP 93 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccc
Confidence 446999999999999998 68888999999997543222211 12234 5555779999999999999987652
Q ss_pred ----------------------cceEeccceec-------CCCcEEEEcHHHHHHHHhc---------CC---CCCCCcc
Q psy2764 143 ----------------------VGLVTGDFQIN-------TTASCLVMTTEILRSMLYR---------GS---DVLRDLE 181 (419)
Q Consensus 143 ----------------------~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~---------~~---~~l~~~~ 181 (419)
+..++|+.... .+++|||+|++.+.+-... .. ..+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 94 EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 34567876543 4589999998766432210 00 1368899
Q ss_pred EEEEeCCcccCCCcchHHHHHHHHhc--CC---CCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEE
Q psy2764 182 YVIFDEVHYINDSERGHVWEEVLILL--PK---EVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLY 255 (419)
Q Consensus 182 ~lIiDE~h~l~~~~~~~~~~~i~~~~--~~---~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (419)
++|+|||| ++.+|...+..|++.+ ++ ..|+++||||++.... +...+... +....+. ......
T Consensus 174 ~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~-p~~i~V~---~~~l~a----- 242 (844)
T TIGR02621 174 LIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAE-DYKHPVL---KKRLAA----- 242 (844)
T ss_pred EEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccC-Cceeecc---cccccc-----
Confidence 99999999 5678999999999864 33 2699999999986543 43333321 1111100 000000
Q ss_pred eCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEc
Q psy2764 256 VGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTL 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~ 335 (419)
....+ +..... . . ........+...+ ...++++|||||
T Consensus 243 ----~ki~q-~v~v~~------e---~---------------------------Kl~~lv~~L~~ll-~e~g~~vLVF~N 280 (844)
T TIGR02621 243 ----KKIVK-LVPPSD------E---K---------------------------FLSTMVKELNLLM-KDSGGAILVFCR 280 (844)
T ss_pred ----cceEE-EEecCh------H---H---------------------------HHHHHHHHHHHHH-hhCCCcEEEEEC
Confidence 00000 000000 0 0 0001112232222 344567999999
Q ss_pred chhhHHHHHHHhhcCCCCChhHHHHHHHHHH-----HHHHhcCC----cC---CCCchhhHHHHHHHhhhhhhccCCCC-
Q psy2764 336 SRKRCDQNAANLLSMDFSTATEKSKIHRFFQ-----DSIRNLQN----ED---DRALPQVKRLEQLLKNGIGVHHSGIL- 402 (419)
Q Consensus 336 t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~-----~~l~~f~~----g~---~~~~~~vlv~t~~l~~GIDi~~~~l~- 402 (419)
|++.|+.+++.|++.++ ...++...+.+|. +++++|++ |+ .....++||+|+++++||||+...+.
T Consensus 281 Tv~~Aq~L~~~L~~~g~-~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~ 359 (844)
T TIGR02621 281 TVKHVRKVFAKLPKEKF-ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVC 359 (844)
T ss_pred CHHHHHHHHHHHHhcCC-eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEE
Confidence 99999999999999887 3334444477888 78999986 33 01112799999999999999863332
Q ss_pred --hhhHHHHHHHHhcCc
Q psy2764 403 --PILKEIVEMLFQKGL 417 (419)
Q Consensus 403 --~~~r~~ie~~f~~g~ 417 (419)
...-.+|++..+.|+
T Consensus 360 d~aP~esyIQRiGRtgR 376 (844)
T TIGR02621 360 DLAPFESMQQRFGRVNR 376 (844)
T ss_pred CCCCHHHHHHHhcccCC
Confidence 123467777666554
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.9e-32 Score=289.84 Aligned_cols=260 Identities=12% Similarity=0.079 Sum_probs=182.5
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc------cc
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD------VG 144 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~------~~ 144 (419)
+|+|+++|+++++.++.|++++++||||+|||++++.+......++.++|||+||++|+.|+++.++.+... +.
T Consensus 77 G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~ 156 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLV 156 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEE
Confidence 345799999999999999999999999999998655544444456789999999999999999999997653 33
Q ss_pred eEeccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-----------CcchHHHHH
Q psy2764 145 LVTGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-----------SERGHVWEE 202 (419)
Q Consensus 145 ~~~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-----------~~~~~~~~~ 202 (419)
.++|+.+.. ..++|+|+||+++...+... ...+++++|+||||++++ .+|.+.+..
T Consensus 157 ~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 157 YYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 466765422 24899999999888765432 126799999999999976 356665543
Q ss_pred ----HHH----------------------hcCCCCc-EEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCc--cceEE
Q psy2764 203 ----VLI----------------------LLPKEVC-IVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV--PLKHF 253 (419)
Q Consensus 203 ----i~~----------------------~~~~~~~-~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ 253 (419)
++. .+++..| ++.+|||++...+..+.+... .. +.. ...++. .+.+.
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~--l~-f~v-~~~~~~lr~i~~~ 310 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL--LG-FEV-GSGRSALRNIVDV 310 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC--eE-EEe-cCCCCCCCCcEEE
Confidence 221 2234455 677999998654444444321 11 111 111111 11111
Q ss_pred EEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEE
Q psy2764 254 LYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLF 333 (419)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF 333 (419)
++... ... ...+.+++... +.++|||
T Consensus 311 yi~~~----------------------------------------------------~~~-k~~L~~ll~~~-g~~gIVF 336 (1638)
T PRK14701 311 YLNPE----------------------------------------------------KII-KEHVRELLKKL-GKGGLIF 336 (1638)
T ss_pred EEECC----------------------------------------------------HHH-HHHHHHHHHhC-CCCeEEE
Confidence 11000 000 12455555444 4569999
Q ss_pred Ecchhh---HHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHH----HHHhhhhhhcc
Q psy2764 334 TLSRKR---CDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE----QLLKNGIGVHH 398 (419)
Q Consensus 334 ~~t~~~---~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t----~~l~~GIDi~~ 398 (419)
|+|++. |++++..|...|+.+...|+ .|.+.+++|++|+. +|||+| ++++||||+|+
T Consensus 337 ~~t~~~~e~ae~la~~L~~~Gi~a~~~h~----~R~~~l~~F~~G~~----~VLVaT~s~~gvaaRGIDiP~ 400 (1638)
T PRK14701 337 VPIDEGAEKAEEIEKYLLEDGFKIELVSA----KNKKGFDLFEEGEI----DYLIGVATYYGTLVRGLDLPE 400 (1638)
T ss_pred EeccccchHHHHHHHHHHHCCCeEEEecc----hHHHHHHHHHcCCC----CEEEEecCCCCeeEecCccCC
Confidence 999875 58999999999999877665 38899999999999 999999 59999999998
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.98 E-value=5.1e-32 Score=273.48 Aligned_cols=282 Identities=15% Similarity=0.220 Sum_probs=190.9
Q ss_pred ccccCCCCccHHHHHHHHHHhcC------CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 66 MAHTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 66 ~~~~~~~~~~~~Q~~ai~~~~~~------~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
.-...||+||++|++|++.+..+ .+.+++||||||||++|++++......+.+++|++||++||.|+++.++++
T Consensus 228 ~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 228 FLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHH
Confidence 33467889999999999998654 368999999999999998888877778899999999999999999999998
Q ss_pred ccc----cceEeccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHH
Q psy2764 140 FQD----VGLVTGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL 204 (419)
Q Consensus 140 ~~~----~~~~~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~ 204 (419)
+.. +.+++|+.... .+++|+|+||+.+.. ...+++++++|+||+|++....+. .+.
T Consensus 308 ~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr~----~l~ 378 (630)
T TIGR00643 308 LAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQRK----KLR 378 (630)
T ss_pred hcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHHH----HHH
Confidence 764 56788876432 247999999987742 345788999999999987542222 222
Q ss_pred HhcC--CCCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecC-CCCccceEEEEeCCcccccceeeeccccCcccchhh
Q psy2764 205 ILLP--KEVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTL-KRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGY 280 (419)
Q Consensus 205 ~~~~--~~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (419)
.... ..+++++||||+.... .+..+ +.. ........ ....++.......
T Consensus 379 ~~~~~~~~~~~l~~SATp~prtl~l~~~-~~l---~~~~i~~~p~~r~~i~~~~~~~----------------------- 431 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPRTLALTVY-GDL---DTSIIDELPPGRKPITTVLIKH----------------------- 431 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhc-CCc---ceeeeccCCCCCCceEEEEeCc-----------------------
Confidence 2222 2689999999975432 22221 110 00010000 0011111111000
Q ss_pred hHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcch--------hhHHHHHHHhhcC--
Q psy2764 281 LAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSR--------KRCDQNAANLLSM-- 350 (419)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~--------~~~~~l~~~L~~~-- 350 (419)
......+..+.+.+ ..+.+++|||+.+ ..++.+++.|...
T Consensus 432 ----------------------------~~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~ 481 (630)
T TIGR00643 432 ----------------------------DEKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFP 481 (630)
T ss_pred ----------------------------chHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCC
Confidence 00011223333333 2456699999876 4566777777653
Q ss_pred CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh-------hhHHHHHHHHhcCc
Q psy2764 351 DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP-------ILKEIVEMLFQKGL 417 (419)
Q Consensus 351 ~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~-------~~r~~ie~~f~~g~ 417 (419)
++.....|+.+ .++|.+++++|++|+. +|||||+++++|||+|++++.. ..-.+++...+.|+
T Consensus 482 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~----~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR 552 (630)
T TIGR00643 482 KYNVGLLHGRMKSDEKEAVMEEFREGEV----DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGR 552 (630)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCC----CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhccc
Confidence 55555666655 7899999999999999 9999999999999999998732 23345555555543
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.98 E-value=2.1e-31 Score=262.54 Aligned_cols=304 Identities=12% Similarity=0.058 Sum_probs=195.9
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
++|+++|.+|++.++.+.+.++++|||+|||+++...+.... +...++||++||++|+.|+.+.+.++... +..+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 568999999999999999999999999999998655444333 33449999999999999999999987632 3344
Q ss_pred eccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-
Q psy2764 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE- 225 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~- 225 (419)
.|+.....+.+|+|+|++++.+.. ...+++++++|+||||++.+. .+..++..+++..++++||||+++...
T Consensus 193 ~~g~~~~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~ 265 (501)
T PHA02558 193 YSGTAKDTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKAN 265 (501)
T ss_pred ecCcccCCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCcccc
Confidence 455444456899999999986533 235678999999999998753 356666667667889999999976432
Q ss_pred ---HHHHhcCcCCccEEEEec---CCCC--ccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCC
Q psy2764 226 ---FADWVGNTKKTKVYVVST---LKRP--VPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGS 297 (419)
Q Consensus 226 ---~~~~l~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (419)
+..+++.. ...+.. .... .+.....+.... ...... . .....|...+.....
T Consensus 266 ~~~~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~-~~~~~~-~------~~~~~~~~~~~~l~~-------- 325 (501)
T PHA02558 266 ILQYVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRY-PDEDRV-K------LKGEDYQEEIKYITS-------- 325 (501)
T ss_pred HHHHHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccC-CHHHhh-h------hcccchHHHHHHHhc--------
Confidence 22233321 111000 0000 111111110000 000000 0 000011111000000
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcC
Q psy2764 298 GGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNED 376 (419)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~ 376 (419)
...+...+..+...+. ..+.++||||+++++|+.+++.|.+.|.++...++.+ .++|.++++.|++|.
T Consensus 326 ----------~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~ 394 (501)
T PHA02558 326 ----------HTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK 394 (501)
T ss_pred ----------cHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 0001111222222222 3456799999999999999999999999887766666 778999999999888
Q ss_pred CCCchhhHHHH-HHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 377 DRALPQVKRLE-QLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 377 ~~~~~~vlv~t-~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
. .++|+| +++++|||+|+++. +.....+++...|-++
T Consensus 395 ~----~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R 438 (501)
T PHA02558 395 G----IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLR 438 (501)
T ss_pred C----eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcccc
Confidence 7 789988 99999999999875 2344456666665544
No 61
>KOG0951|consensus
Probab=99.97 E-value=2e-31 Score=265.95 Aligned_cols=295 Identities=24% Similarity=0.338 Sum_probs=222.6
Q ss_pred ccHHHHHHHHHHh-cCCcEEEEcCCCCChhHHHHHHHHHHhc-----------CCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 74 LDVFQKQAIIKLE-EHNHVFVTAHTSAGKTVIAEYAIALSQN-----------HKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 74 ~~~~Q~~ai~~~~-~~~~~iv~apTGsGKT~~~~~~i~~~~~-----------~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
++++|.+..++.+ ...|++++||||+|||.++.+-|+.-.. ...++++++|+++|+.++...|.+.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 7999999999874 5679999999999999999888875433 235899999999999999999999887
Q ss_pred ccce----Eeccceec----CCCcEEEEcHHHHHHHHhcC--CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC---
Q psy2764 142 DVGL----VTGDFQIN----TTASCLVMTTEILRSMLYRG--SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--- 208 (419)
Q Consensus 142 ~~~~----~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~~--~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--- 208 (419)
..|+ .+|+.+.. ....|+||||+.+.-.-.+. ....+-++++|+||+|++.| .+++.++.+..+..
T Consensus 390 ~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRS 468 (1674)
T ss_pred ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHh
Confidence 7554 66665432 45899999999986443332 23345678999999998866 78898887776542
Q ss_pred ----CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHH
Q psy2764 209 ----KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284 (419)
Q Consensus 209 ----~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (419)
.+.+++|+|||+||..|++.|+.... ..++.++..+||+|+.+.++....++....+
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~------------------ 529 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRF------------------ 529 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHH------------------
Confidence 47999999999999999999999965 8889999999999999887766553322221
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHH-
Q psy2764 285 EVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHR- 363 (419)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~- 363 (419)
..++..+++.+++.. +..++||||.+|+++-+.|+.+++........+..+.+
T Consensus 530 -----------------------qamNe~~yeKVm~~a---gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~ 583 (1674)
T KOG0951|consen 530 -----------------------QAMNEACYEKVLEHA---GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMRED 583 (1674)
T ss_pred -----------------------HHHHHHHHHHHHHhC---CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 244556666666553 33679999999999999999999764333333322211
Q ss_pred -HHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 364 -FFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 364 -~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
.-.++++.-. +.. .-.-.-+++.-|+.|||+||...+|..+|.||.+|+|+
T Consensus 584 s~s~eilrtea-~~~----kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 584 SASREILRTEA-GQA----KNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred cchhhhhhhhh-hcc----cChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 1112332111 222 23446899999999999999999999999999999974
No 62
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=5.1e-31 Score=278.02 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=177.7
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc-------c
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-------V 143 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-------~ 143 (419)
+++|+++|+.+++.++.|++++++||||+|||+.++..+..+...+++++||+||++||.|+++.+.++... +
T Consensus 76 g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i 155 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNI 155 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeee
Confidence 345799999999999999999999999999997433333344456889999999999999999999998754 2
Q ss_pred ceEeccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-----------CcchH-HH
Q psy2764 144 GLVTGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-----------SERGH-VW 200 (419)
Q Consensus 144 ~~~~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-----------~~~~~-~~ 200 (419)
+.++|+.+.. ..++|+|+||+++...+..-. .+++++|+||||.+++ .||.. .+
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---PKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---CCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH
Confidence 3456765422 248999999999987665421 1899999999999987 34544 23
Q ss_pred HHHH----------------------HhcCCCCc--EEEEeee-cCChHHHHHHhcCcCCccEEEEecCCCCccceEEEE
Q psy2764 201 EEVL----------------------ILLPKEVC--IVMLSAT-VPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 255 (419)
Q Consensus 201 ~~i~----------------------~~~~~~~~--~l~~SAT-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (419)
+.++ +.+++..| ++++||| .|..... .++... ..+.+.........+.+.+.
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~-~l~r~l--l~~~v~~~~~~~r~I~~~~~ 309 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA-KLFREL--LGFEVGGGSDTLRNVVDVYV 309 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-HHcccc--cceEecCccccccceEEEEE
Confidence 4432 22344444 6778999 5554331 111110 00111000000001111110
Q ss_pred eCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEc
Q psy2764 256 VGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTL 335 (419)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~ 335 (419)
.. . . ....+.+++... +.++||||+
T Consensus 310 ------------~~---------------------------------------~-~--~~~~L~~ll~~l-~~~~IVFv~ 334 (1171)
T TIGR01054 310 ------------ED---------------------------------------E-D--LKETLLEIVKKL-GTGGIVYVS 334 (1171)
T ss_pred ------------ec---------------------------------------c-c--HHHHHHHHHHHc-CCCEEEEEe
Confidence 00 0 0 012344444443 356999999
Q ss_pred ch---hhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHH----HHHHhhhhhhccC
Q psy2764 336 SR---KRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRL----EQLLKNGIGVHHS 399 (419)
Q Consensus 336 t~---~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~----t~~l~~GIDi~~~ 399 (419)
|+ +.|++++..|.+.|+.+...|+.+. ++.+++|++|+. ++||+ ||+++||||+|++
T Consensus 335 t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---~~~l~~Fr~G~~----~vLVata~~tdv~aRGIDip~~ 398 (1171)
T TIGR01054 335 IDYGKEKAEEIAEFLENHGVKAVAYHATKP---KEDYEKFAEGEI----DVLIGVASYYGTLVRGLDLPER 398 (1171)
T ss_pred ccccHHHHHHHHHHHHhCCceEEEEeCCCC---HHHHHHHHcCCC----CEEEEeccccCcccccCCCCcc
Confidence 99 9999999999999998877776653 378999999999 99999 5999999999993
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.7e-30 Score=237.53 Aligned_cols=334 Identities=21% Similarity=0.206 Sum_probs=215.7
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEe
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVT 147 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~ 147 (419)
+++.||.......+.+ |.+++.|||-|||.++++.+. .+...+.++|+++||+.|+.|.++.+.+..+- +..++
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~lt 93 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALT 93 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeec
Confidence 4799999988777665 999999999999999888877 44444558999999999999999999998753 77899
Q ss_pred ccceecC------CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 148 GDFQINT------TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 148 g~~~~~~------~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
|..+..+ ..+|+|+||+.+.+-+..+..++.++.++|+||||+..... |....... ....+++.++++|||+
T Consensus 94 Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y-~~~~k~~~ilgLTASP 172 (542)
T COG1111 94 GEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEY-LRSAKNPLILGLTASP 172 (542)
T ss_pred CCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHH-HHhccCceEEEEecCC
Confidence 9887653 48999999999999999999999999999999999865422 33333323 2334578899999999
Q ss_pred CChHH-HHHHhcCcCCccEEEEecCCC---Cc----cceEEEEeCCcc-------------------------------c
Q psy2764 221 PNTLE-FADWVGNTKKTKVYVVSTLKR---PV----PLKHFLYVGPVL-------------------------------E 261 (419)
Q Consensus 221 ~~~~~-~~~~l~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~-------------------------------~ 261 (419)
.+..+ +.+-+.+..-..+.+...... |. .++..-+..+.. .
T Consensus 173 Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~ 252 (542)
T COG1111 173 GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVS 252 (542)
T ss_pred CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCccc
Confidence 87764 444333322233333222111 11 111111111100 0
Q ss_pred ccceeeec-------cccCc------------------------ccchhhhHHHHHHHHhhhhcCCCCCCC---------
Q psy2764 262 KNQLFLIR-------EAEGE------------------------FLTRGYLAAKEVKCRKQLEKGGSGGGK--------- 301 (419)
Q Consensus 262 ~~~~~~~~-------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 301 (419)
+.+.+... ..... ..+..++.-++ +..+.... |.+
T Consensus 253 ~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~----~l~e~~~~-~~sk~a~~l~~d 327 (542)
T COG1111 253 KKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLE----KLEEEATK-GGSKAAKSLLAD 327 (542)
T ss_pred HhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH----HHHHHhcc-cchHHHHHHhcC
Confidence 00000000 00000 00011111111 11111111 110
Q ss_pred -------------CCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCCh---------h-HH
Q psy2764 302 -------------LNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTA---------T-EK 358 (419)
Q Consensus 302 -------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~---------~-~~ 358 (419)
.........-....+.+.+.+..+...++|||++-|++|+.+++.|.+.|.... . ..
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccc
Confidence 000011111112233444455556678999999999999999999999877764 1 33
Q ss_pred HHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 359 SKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 359 ~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
++.+++..+++++|++|+. ++||||++.++|+|||.++| .+.+-..|++..+.|+
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~----nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR 468 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEY----NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR 468 (542)
T ss_pred ccCHHHHHHHHHHHhcCCc----eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc
Confidence 4457888899999999999 99999999999999999998 3566667777777664
No 64
>KOG0349|consensus
Probab=99.97 E-value=2.7e-31 Score=239.20 Aligned_cols=282 Identities=12% Similarity=0.067 Sum_probs=183.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccc-----cc--eEeccc-------eecCCCcEEEEcHHHHHHHHhcCCCCCCCcc
Q psy2764 116 KTRTIYTSPIKALSNQKYRDFRETFQD-----VG--LVTGDF-------QINTTASCLVMTTEILRSMLYRGSDVLRDLE 181 (419)
Q Consensus 116 ~~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~--~~~g~~-------~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~ 181 (419)
.+.++|+-|+|+|++|+++.++++-.. +. ++.|+. +...+.+|+|+||+++..++..+...+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 578999999999999999977765332 22 344543 2345689999999999999999999999999
Q ss_pred EEEEeCCcccCCCcchHHHHHHHHhcC------CCCcEEEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCcc--ce
Q psy2764 182 YVIFDEVHYINDSERGHVWEEVLILLP------KEVCIVMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVP--LK 251 (419)
Q Consensus 182 ~lIiDE~h~l~~~~~~~~~~~i~~~~~------~~~~~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~--~~ 251 (419)
++|+||++.++.+++...+.++..+++ ...|.+.+|||+..-. .+.+.+.. ..+++--.....+| ..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmh---fptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMH---FPTWVDLKGEDLVPETVH 442 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhcc---CceeEecccccccchhhc
Confidence 999999999999999999999888876 3689999999985322 24433332 12222222223333 22
Q ss_pred EEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEE
Q psy2764 252 HFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVV 331 (419)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~L 331 (419)
+.+......... ........+++ ...-..+....+....+.++.+..--.-+.-+..++.....++|
T Consensus 443 hvv~lv~p~~d~------------sw~~lr~~i~t-d~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkai 509 (725)
T KOG0349|consen 443 HVVKLVCPSVDG------------SWCDLRQFIET-DKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAI 509 (725)
T ss_pred cceeecCCccCc------------cHHHHhhhhcc-CCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceE
Confidence 222221110000 00000000000 00000011111211112222221111111222234566678899
Q ss_pred EEEcchhhHHHHHHHhhcCC---CCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhc------cCCC
Q psy2764 332 LFTLSRKRCDQNAANLLSMD---FSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVH------HSGI 401 (419)
Q Consensus 332 IF~~t~~~~~~l~~~L~~~~---~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~------~~~l 401 (419)
|||.|+..|+.+.+.+.+.| +++.+.+++. +.+|.+.++.|++++. +.|||||+++||+||+ ++.|
T Consensus 510 ifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv----kflictdvaargldi~g~p~~invtl 585 (725)
T KOG0349|consen 510 IFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV----KFLICTDVAARGLDITGLPFMINVTL 585 (725)
T ss_pred EEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe----EEEEEehhhhccccccCCceEEEEec
Confidence 99999999999999999875 4555555544 7889999999999999 9999999999999997 6678
Q ss_pred ChhhHHHHHHHHhcCc
Q psy2764 402 LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 ~~~~r~~ie~~f~~g~ 417 (419)
|....++|.+..+-|+
T Consensus 586 pd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 586 PDDKTNYVHRIGRVGR 601 (725)
T ss_pred Ccccchhhhhhhccch
Confidence 8888899988877664
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=3.2e-29 Score=256.25 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=185.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-c----cceEecc
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-D----VGLVTGD 149 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~----~~~~~g~ 149 (419)
..+-.+.+..+.++++++++||||||||+++..+++.......+++|++|||++|.|+++++.+..+ . +|...++
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 4555667777888999999999999999886555553333446899999999999999999976543 3 4444433
Q ss_pred c-eecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc-cCCCcc-hHHHHHHHHhcCCCCcEEEEeeecCChHHH
Q psy2764 150 F-QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY-INDSER-GHVWEEVLILLPKEVCIVMLSATVPNTLEF 226 (419)
Q Consensus 150 ~-~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~-l~~~~~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 226 (419)
. ....+.+|+|+||+++.+++... ..+.++++|||||+|. .++... ...+..++..++++.|+++||||++.. .+
T Consensus 87 ~~~~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l 164 (812)
T PRK11664 87 ESKVGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RL 164 (812)
T ss_pred ccccCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HH
Confidence 3 34456789999999999988764 4689999999999995 333221 223345556677889999999999754 45
Q ss_pred HHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCC
Q psy2764 227 ADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306 (419)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (419)
.+++... .+ +....+..++++++..... .++ +
T Consensus 165 ~~~~~~~---~~--I~~~gr~~pV~~~y~~~~~------------------~~~---~---------------------- 196 (812)
T PRK11664 165 QQLLPDA---PV--IVSEGRSFPVERRYQPLPA------------------HQR---F---------------------- 196 (812)
T ss_pred HHhcCCC---CE--EEecCccccceEEeccCch------------------hhh---H----------------------
Confidence 6665431 11 1222333444443321111 000 0
Q ss_pred CCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhc---CCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchh
Q psy2764 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS---MDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQ 382 (419)
Q Consensus 307 ~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~---~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~ 382 (419)
.......+...+.. ..+.+||||+++.+++.+++.|.. .++.....|+.+ .++|.++++.|++|.. +
T Consensus 197 ----~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r----k 267 (812)
T PRK11664 197 ----DEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR----K 267 (812)
T ss_pred ----HHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe----E
Confidence 00111233334433 346799999999999999999986 355555555555 6788999999999988 9
Q ss_pred hHHHHHHHhhhhhhccCCC
Q psy2764 383 VKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 383 vlv~t~~l~~GIDi~~~~l 401 (419)
|++||+++++||||+++++
T Consensus 268 VlvATnIAErsLtIp~V~~ 286 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRL 286 (812)
T ss_pred EEEecchHHhcccccCceE
Confidence 9999999999999998765
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=8.3e-30 Score=242.88 Aligned_cols=273 Identities=17% Similarity=0.201 Sum_probs=172.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEecccee--------------
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTGDFQI-------------- 152 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g~~~~-------------- 152 (419)
+++++||||||||++++.++.... ..+.+++|++|+++|+.|+++++..+++ .++..+|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 589999999999999888877543 4568999999999999999999999865 45555553220
Q ss_pred -----------cCCCcEEEEcHHHHHHHHhcCCC----CC--CCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEE
Q psy2764 153 -----------NTTASCLVMTTEILRSMLYRGSD----VL--RDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIV 214 (419)
Q Consensus 153 -----------~~~~~Iiv~Tp~~l~~~~~~~~~----~l--~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l 214 (419)
....+|+|+||+++...+..+.. .+ -..+++|+||+|.+.+.++.. +..++..+. .+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 02367999999999876655211 11 123789999999998765554 445554443 579999
Q ss_pred EEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhc
Q psy2764 215 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEK 294 (419)
Q Consensus 215 ~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (419)
+||||+|+. +.+++....... ........+.. . ...+.+......
T Consensus 160 ~~SATlp~~--l~~~~~~~~~~~---~~~~~~~~~~~-------~-~~~~~~~~~~~~---------------------- 204 (358)
T TIGR01587 160 LMSATLPKF--LKEYAEKIGYVE---FNEPLDLKEER-------R-FERHRFIKIESD---------------------- 204 (358)
T ss_pred EEecCchHH--HHHHHhcCCCcc---cccCCCCcccc-------c-cccccceeeccc----------------------
Confidence 999999843 334433311000 00000000000 0 000000000000
Q ss_pred CCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCC--ChhHHHHH-HHHHHH----
Q psy2764 295 GGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFS--TATEKSKI-HRFFQD---- 367 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~--~~~~~~~~-~~~r~~---- 367 (419)
..........+.+.+ ..++++||||+|+++|+.+++.|++.+.. ....|+.+ ..+|.+
T Consensus 205 -------------~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~ 269 (358)
T TIGR01587 205 -------------KVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAE 269 (358)
T ss_pred -------------cccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHH
Confidence 000111122222222 34567999999999999999999887653 33344444 555644
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC---CChhhHHHHHHHHhcCc
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG---ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~---l~~~~r~~ie~~f~~g~ 417 (419)
+++.|++|.. ++||||+++++|||++..- .+.....++++..|.|+
T Consensus 270 ~~~~f~~~~~----~ilvaT~~~~~GiDi~~~~vi~~~~~~~~~iqr~GR~gR 318 (358)
T TIGR01587 270 LLEEMKKNEK----FVIVATQVIEASLDISADVMITELAPIDSLIQRLGRLHR 318 (358)
T ss_pred HHHHhcCCCC----eEEEECcchhceeccCCCEEEEcCCCHHHHHHHhccccC
Confidence 5899999888 9999999999999997322 13345678888887775
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=4.5e-29 Score=254.58 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=187.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-cc----ceEec-
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DV----GLVTG- 148 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~----~~~~g- 148 (419)
..+-.+.+..+..+++++++|+||||||+++..++......+.+++|+.|||++|.|+++++.+..+ .+ |...+
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~ 83 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRG 83 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcc
Confidence 3455566777888999999999999999987666654444567999999999999999999975543 33 33222
Q ss_pred cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc-ccCCCcchH-HHHHHHHhcCCCCcEEEEeeecCChHHH
Q psy2764 149 DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH-YINDSERGH-VWEEVLILLPKEVCIVMLSATVPNTLEF 226 (419)
Q Consensus 149 ~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h-~l~~~~~~~-~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 226 (419)
+.....+.+|+|+|++++..++... ..+.++++|||||+| +.++..+.- .+..+...++++.|+++||||++.. .+
T Consensus 84 ~~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~-~l 161 (819)
T TIGR01970 84 ENKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE-RL 161 (819)
T ss_pred ccccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH-HH
Confidence 2233456899999999999888764 468999999999999 455544432 3345556677889999999999754 35
Q ss_pred HHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCC
Q psy2764 227 ADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306 (419)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (419)
.++++.. .+ +....+..++++++..... . ..+.
T Consensus 162 ~~~l~~~---~v--I~~~gr~~pVe~~y~~~~~------------~-----~~~~------------------------- 194 (819)
T TIGR01970 162 SSLLPDA---PV--VESEGRSFPVEIRYLPLRG------------D-----QRLE------------------------- 194 (819)
T ss_pred HHHcCCC---cE--EEecCcceeeeeEEeecch------------h-----hhHH-------------------------
Confidence 6666531 11 1223333444443321110 0 0000
Q ss_pred CCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhc---CCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchh
Q psy2764 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS---MDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQ 382 (419)
Q Consensus 307 ~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~---~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~ 382 (419)
..+...+...+.. ..+++||||+++.+++.+++.|.+ .++.....|+.+ .++|.++++.|++|.. +
T Consensus 195 -----~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r----k 264 (819)
T TIGR01970 195 -----DAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR----K 264 (819)
T ss_pred -----HHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe----E
Confidence 0111233333333 346699999999999999999987 355555556655 7789999999999988 9
Q ss_pred hHHHHHHHhhhhhhccCCC
Q psy2764 383 VKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 383 vlv~t~~l~~GIDi~~~~l 401 (419)
|+||||++++|||||++++
T Consensus 265 VlVATnIAErgItIp~V~~ 283 (819)
T TIGR01970 265 VVLATNIAETSLTIEGIRV 283 (819)
T ss_pred EEEecchHhhcccccCceE
Confidence 9999999999999997654
No 68
>KOG0329|consensus
Probab=99.97 E-value=5.8e-30 Score=215.65 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=209.5
Q ss_pred ccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCC
Q psy2764 40 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHK 116 (419)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~ 116 (419)
++..+.|.+ |=|.|++. +++-..||..| +++|+++||...-|.+++++|.+|.|||.+|.+.-+.-. ...
T Consensus 38 ~ihssgfrd-fllkpell---raivdcgfehp---sevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~ 110 (387)
T KOG0329|consen 38 SIHSSGFRD-FLLKPELL---RAIVDCGFEHP---SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQ 110 (387)
T ss_pred EEeccchhh-hhcCHHHH---HHHHhccCCCc---hHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCe
Confidence 455677888 88888888 99999999988 999999999999999999999999999966544433222 234
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccceecC-------CCcEEEEcHHHHHHHHhcCCCCCCCccEEE
Q psy2764 117 TRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQINT-------TASCLVMTTEILRSMLYRGSDVLRDLEYVI 184 (419)
Q Consensus 117 ~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~~-------~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lI 184 (419)
..++++|.||+||-|+.+...++.++ +.++.|+..+.. -++|+|+||++++.+..++...+++++.+|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceee
Confidence 57999999999999998776666543 678999887654 389999999999999999999999999999
Q ss_pred EeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccc
Q psy2764 185 FDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEK 262 (419)
Q Consensus 185 iDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (419)
+||||.++++ ..+..++.+.++.+...|++.||||+++... +...+.. .|++.++.....
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQ---------------dPmEi~vDdE~K--- 252 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQ---------------DPMEIFVDDEAK--- 252 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhc---------------Cchhhhccchhh---
Confidence 9999987653 3566788888999999999999999988765 3333222 122222111000
Q ss_pred cceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHH
Q psy2764 263 NQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQ 342 (419)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~ 342 (419)
.-....++++..+...+++ ..+.+++......+++||+.+..+..
T Consensus 253 ---------LtLHGLqQ~YvkLke~eKN-------------------------rkl~dLLd~LeFNQVvIFvKsv~Rl~- 297 (387)
T KOG0329|consen 253 ---------LTLHGLQQYYVKLKENEKN-------------------------RKLNDLLDVLEFNQVVIFVKSVQRLS- 297 (387)
T ss_pred ---------hhhhhHHHHHHhhhhhhhh-------------------------hhhhhhhhhhhhcceeEeeehhhhhh-
Confidence 1112457777776654433 45666666666777999999887710
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcC
Q psy2764 343 NAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKG 416 (419)
Q Consensus 343 l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g 416 (419)
|. . + +|+|+++.||+||..+ +||..--.+..+.-+.|
T Consensus 298 -----------------------------f~---k----r-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAg 340 (387)
T KOG0329|consen 298 -----------------------------FQ---K----R-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 340 (387)
T ss_pred -----------------------------hh---h----h-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhh
Confidence 11 0 4 8999999999999988 56666666666655555
Q ss_pred c
Q psy2764 417 L 417 (419)
Q Consensus 417 ~ 417 (419)
+
T Consensus 341 r 341 (387)
T KOG0329|consen 341 R 341 (387)
T ss_pred c
Confidence 4
No 69
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=4.7e-29 Score=241.12 Aligned_cols=318 Identities=20% Similarity=0.163 Sum_probs=196.8
Q ss_pred ccCCCCccHHHHHHHHHHhc----CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc-
Q psy2764 68 HTWPFELDVFQKQAIIKLEE----HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD- 142 (419)
Q Consensus 68 ~~~~~~~~~~Q~~ai~~~~~----~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~- 142 (419)
....++|+++|++|+..+.. ++..++++|||+|||.+++..+..+.. ++|||+|+++|+.|+.+.+.+.+..
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~---~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR---STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC---CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 44455689999999999976 899999999999999988777766633 3999999999999999888887764
Q ss_pred --cceEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 143 --VGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 143 --~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
+|.+.|+........|+|+|.+.+..............++||+||||++....+... ...+.....++|+|||+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~----~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRI----LELLSAAYPRLGLTATP 183 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHH----HHhhhcccceeeeccCc
Confidence 566666554333368999999988764211222334789999999999876554443 33333222289999998
Q ss_pred CChHH--HHHHhcCcCCccEEEEecC-----CCCccceEEEEeCCc--ccccceeeeccccCcccchhhhHHHHHHHHhh
Q psy2764 221 PNTLE--FADWVGNTKKTKVYVVSTL-----KRPVPLKHFLYVGPV--LEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQ 291 (419)
Q Consensus 221 ~~~~~--~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (419)
++.+. ....... .+..++-+... .--.|.....+.... ...............+...............
T Consensus 184 ~R~D~~~~~~l~~~-~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 261 (442)
T COG1061 184 EREDGGRIGDLFDL-IGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARR- 261 (442)
T ss_pred eeecCCchhHHHHh-cCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHH-
Confidence 86652 2221111 11111211100 111122222222111 0000000000000000000000000000000
Q ss_pred hhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHc-CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q psy2764 292 LEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKS-QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIR 370 (419)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~ 370 (419)
...........+..++..+ .+.+++|||.++.+++.++..+...|+.....+.....+|.++++
T Consensus 262 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 262 ---------------IAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILE 326 (442)
T ss_pred ---------------HhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH
Confidence 0112233345555555544 466799999999999999999999887333355555889999999
Q ss_pred hcCCcCCCCchhhHHHHHHHhhhhhhccCCCC------hhhHHHHHHHH
Q psy2764 371 NLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL------PILKEIVEMLF 413 (419)
Q Consensus 371 ~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~------~~~r~~ie~~f 413 (419)
+|+.|.. ++|+++.++.+|+|+|+++.. ...+.+++.+.
T Consensus 327 ~fr~g~~----~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lG 371 (442)
T COG1061 327 RFRTGGI----KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLG 371 (442)
T ss_pred HHHcCCC----CEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhh
Confidence 9999887 999999999999999999973 34445555443
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=6.9e-29 Score=234.28 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=170.5
Q ss_pred HHHHHHHHHhcCC--cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc--------cceE
Q psy2764 77 FQKQAIIKLEEHN--HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--------VGLV 146 (419)
Q Consensus 77 ~Q~~ai~~~~~~~--~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--------~~~~ 146 (419)
+|.++++.+.++. ++++.||||||||++|++++.. ...++++++|+++|++|+++++++++.. +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 5999999997776 4889999999999997766553 3557899999999999999999988631 3334
Q ss_pred ecccee---------------------------cCCCcEEEEcHHHHHHHHhcC---C-----CCCCCccEEEEeCCccc
Q psy2764 147 TGDFQI---------------------------NTTASCLVMTTEILRSMLYRG---S-----DVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 147 ~g~~~~---------------------------~~~~~Iiv~Tp~~l~~~~~~~---~-----~~l~~~~~lIiDE~h~l 191 (419)
+|+... ...+.|+++||+.+..++... . .++..++++|+||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 453110 124778999999998665431 1 13578999999999998
Q ss_pred CCCcchH-----HHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCc--CCccEEEEecC-----C-------------C
Q psy2764 192 NDSERGH-----VWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNT--KKTKVYVVSTL-----K-------------R 246 (419)
Q Consensus 192 ~~~~~~~-----~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~--~~~~~~~~~~~-----~-------------~ 246 (419)
..+.... ....++.......+++++|||++.... +.+... ....+..+... . +
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~--~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALI--LRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHH--HHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 6533221 122233333346899999999976532 222211 11111111111 0 0
Q ss_pred Cc--cceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q psy2764 247 PV--PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK 324 (419)
Q Consensus 247 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 324 (419)
++ ++.+.+.. .. . +.. .......+.+.+.+..
T Consensus 236 ~~~~~i~~~~~~-~~--------------~-----~~~--------------------------~~l~~l~~~i~~~~~~ 269 (357)
T TIGR03158 236 PVLPPVELELIP-AP--------------D-----FKE--------------------------EELSELAEEVIERFRQ 269 (357)
T ss_pred eeccceEEEEEe-CC--------------c-----hhH--------------------------HHHHHHHHHHHHHHhc
Confidence 00 11111110 00 0 000 0001112233333444
Q ss_pred cCCCCEEEEEcchhhHHHHHHHhhcCCC--CChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 325 SQNLPVVLFTLSRKRCDQNAANLLSMDF--STATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 325 ~~~~~~LIF~~t~~~~~~l~~~L~~~~~--~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
..++++||||+|++.|+.++..|++.+. .....++.+ +..|.+. ++. ++||||+++++||||+...+
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~----~iLVaTdv~~rGiDi~~~~v 339 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQF----DILLGTSTVDVGVDFKRDWL 339 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccC----CEEEEecHHhcccCCCCceE
Confidence 4567899999999999999999998653 343444444 4445433 244 79999999999999987644
Q ss_pred ---ChhhHHHHHHHHhcC
Q psy2764 402 ---LPILKEIVEMLFQKG 416 (419)
Q Consensus 402 ---~~~~r~~ie~~f~~g 416 (419)
|.....++++..|.|
T Consensus 340 i~~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 IFSARDAAAFWQRLGRLG 357 (357)
T ss_pred EECCCCHHHHhhhcccCC
Confidence 334556666555543
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=8.2e-30 Score=245.58 Aligned_cols=282 Identities=14% Similarity=0.126 Sum_probs=210.2
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceec
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQIN 153 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~ 153 (419)
+++-|.++|..++.++|+++..|||+|||+||.++.... .+-+|||.|..+|..++.+.+.+.+..+..+.+..+..
T Consensus 18 FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~ 94 (590)
T COG0514 18 FRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSRE 94 (590)
T ss_pred cCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHH
Confidence 789999999999999999999999999999976665544 44799999999999999999999886666666653322
Q ss_pred -----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc--chHHHHHHHHhcC--CCCcEEEEee
Q psy2764 154 -----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE--RGHVWEEVLILLP--KEVCIVMLSA 218 (419)
Q Consensus 154 -----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~--~~~~~~~i~~~~~--~~~~~l~~SA 218 (419)
.+.++++.+||++.+-.......-..+.+++|||||++..|| |++.+..+-.... +++.++++||
T Consensus 95 e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTA 174 (590)
T COG0514 95 ERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTA 174 (590)
T ss_pred HHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeC
Confidence 247999999999874333322234578899999999999997 8888887765433 3899999999
Q ss_pred ecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCC
Q psy2764 219 TVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296 (419)
Q Consensus 219 T~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (419)
|-+... ++.+-|+.... .+ ......||+-. .. +.. .
T Consensus 175 TA~~~v~~DI~~~L~l~~~-~~-~~~sfdRpNi~-~~---------------v~~--------~---------------- 212 (590)
T COG0514 175 TATPRVRDDIREQLGLQDA-NI-FRGSFDRPNLA-LK---------------VVE--------K---------------- 212 (590)
T ss_pred CCChHHHHHHHHHhcCCCc-ce-EEecCCCchhh-hh---------------hhh--------c----------------
Confidence 987664 46666665321 11 11223333211 00 000 0
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCc
Q psy2764 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNE 375 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g 375 (419)
.........+.+ ........+||||.||+.|+.+++.|...|+.+...|+.+ .++|..+.++|.++
T Consensus 213 ------------~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~ 279 (590)
T COG0514 213 ------------GEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND 279 (590)
T ss_pred ------------ccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC
Confidence 000111112222 1144456699999999999999999999999999877767 88999999999999
Q ss_pred CCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 376 DDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 376 ~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
+. +++|||.++..|||-|++ ++|...-.++++-.+.|+
T Consensus 280 ~~----~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGR 323 (590)
T COG0514 280 EI----KVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGR 323 (590)
T ss_pred CC----cEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccC
Confidence 99 999999999999999955 789999999999888774
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=3.6e-28 Score=242.39 Aligned_cols=286 Identities=15% Similarity=0.146 Sum_probs=184.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHH---------HHHHH-HHH-----hcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVI---------AEYAI-ALS-----QNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~---------~~~~i-~~~-----~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
-.+|+++++.+.++++++++|+||||||.+ |+++. ..+ .....+++|++|||+||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999986 22222 222 114578999999999999999999875
Q ss_pred ccc-------cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh
Q psy2764 140 FQD-------VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206 (419)
Q Consensus 140 ~~~-------~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~ 206 (419)
.+. +.+..|+.... ...+|+++|++.. ...+.++++||+||||.....+ ..+..++..
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~ 316 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARK 316 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHH
Confidence 543 35566665421 2468999997521 1257889999999999876543 444444443
Q ss_pred c-CCCCcEEEEeeecCChH-HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHH
Q psy2764 207 L-PKEVCIVMLSATVPNTL-EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284 (419)
Q Consensus 207 ~-~~~~~~l~~SAT~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (419)
. +...|+++||||++... .+.++++.. ..+. . ......++++++.......... ..+..
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l~~~~~~p--~~I~-I-~grt~~pV~~~yi~~~~~~~~~-------------~~y~~-- 377 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRIKEFFPNP--AFVH-I-PGGTLFPISEVYVKNKYNPKNK-------------RAYIE-- 377 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHHHHHhcCC--cEEE-e-CCCcCCCeEEEEeecCcccccc-------------hhhhH--
Confidence 3 34469999999998654 466666531 1111 1 1112245555443221100000 00000
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC--CCCChhHHHHHH
Q psy2764 285 EVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM--DFSTATEKSKIH 362 (419)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~--~~~~~~~~~~~~ 362 (419)
.........+.. .....++++||||+++.+|+.+++.|... ++.....|+.+.
T Consensus 378 ------------------------~~k~~~l~~L~~-~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Ls 432 (675)
T PHA02653 378 ------------------------EEKKNIVTALKK-YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVP 432 (675)
T ss_pred ------------------------HHHHHHHHHHHH-hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcC
Confidence 000111112211 11123457999999999999999999876 566666777664
Q ss_pred HHHHHHHHhc-CCcCCCCchhhHHHHHHHhhhhhhccCCCC---------h---------hhHHHHHHHHhcCcC
Q psy2764 363 RFFQDSIRNL-QNEDDRALPQVKRLEQLLKNGIGVHHSGIL---------P---------ILKEIVEMLFQKGLV 418 (419)
Q Consensus 363 ~~r~~~l~~f-~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~---------~---------~~r~~ie~~f~~g~i 418 (419)
. +++.+++| ++|+. +|+|||+++++|||||++..- . ..-.++++..|.|+.
T Consensus 433 q-~eq~l~~ff~~gk~----kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 433 N-IDEILEKVYSSKNP----SIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred H-HHHHHHHHhccCce----eEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 3 45677887 67877 999999999999999977643 1 333567777777764
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=243.32 Aligned_cols=295 Identities=21% Similarity=0.216 Sum_probs=203.6
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHHHHHHhccc------cce
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYRDFRETFQD------VGL 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~------~~~ 145 (419)
|++||.+|+..+.+|+|++|++|||||||++|+++|... ..+..++|+|.||++|++++.+++.++... ++.
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~ 150 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGR 150 (851)
T ss_pred ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeee
Confidence 699999999999999999999999999999999998843 445567899999999999999999998654 456
Q ss_pred Eecccee-------cCCCcEEEEcHHHHHHHHhcCC----CCCCCccEEEEeCCcccCCCcchHHHHHHH----HhcC--
Q psy2764 146 VTGDFQI-------NTTASCLVMTTEILRSMLYRGS----DVLRDLEYVIFDEVHYINDSERGHVWEEVL----ILLP-- 208 (419)
Q Consensus 146 ~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~----~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~----~~~~-- 208 (419)
++|++.. ...++|+++||++|..++.+.. ..++++++||+||+|.+.. .++..+..++ .++.
T Consensus 151 y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~ 229 (851)
T COG1205 151 YTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRY 229 (851)
T ss_pred ecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHHhcc
Confidence 7787653 3459999999999998665543 3567899999999998743 3454444444 3333
Q ss_pred -CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHH
Q psy2764 209 -KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVK 287 (419)
Q Consensus 209 -~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (419)
.+.|+++.|||+.++.++++-+........ +.....|.....++...+........ +
T Consensus 230 ~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~--v~~~g~~~~~~~~~~~~p~~~~~~~~--~------------------ 287 (851)
T COG1205 230 GSPLQIICTSATLANPGEFAEELFGRDFEVP--VDEDGSPRGLRYFVRREPPIRELAES--I------------------ 287 (851)
T ss_pred CCCceEEEEeccccChHHHHHHhcCCcceee--ccCCCCCCCceEEEEeCCcchhhhhh--c------------------
Confidence 579999999999999987765555322211 33444444444444443320000000 0
Q ss_pred HHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHH----HHhhcCC----CCChhHHH
Q psy2764 288 CRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNA----ANLLSMD----FSTATEKS 359 (419)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~----~~L~~~~----~~~~~~~~ 359 (419)
..........+...+ -..+-++|+|+.+++.++.+. +.+...+ .....+++
T Consensus 288 --------------------r~s~~~~~~~~~~~~-~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~ 346 (851)
T COG1205 288 --------------------RRSALAELATLAALL-VRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA 346 (851)
T ss_pred --------------------ccchHHHHHHHHHHH-HHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccc
Confidence 000111122233332 234556999999999999997 4454445 11222333
Q ss_pred HH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CCh-hhHHHHHHHHhcC
Q psy2764 360 KI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILP-ILKEIVEMLFQKG 416 (419)
Q Consensus 360 ~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~-~~r~~ie~~f~~g 416 (419)
.+ .++|.++.+.|++|+. .++++|+.++-||||-.++ .|. ..-...+...+-|
T Consensus 347 ~~~~~er~~ie~~~~~g~~----~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaG 407 (851)
T COG1205 347 GLHREERRRIEAEFKEGEL----LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAG 407 (851)
T ss_pred cCCHHHHHHHHHHHhcCCc----cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhcc
Confidence 33 7889999999999999 8999999999999986443 444 3445555555544
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.1e-27 Score=237.89 Aligned_cols=300 Identities=14% Similarity=0.091 Sum_probs=189.2
Q ss_pred CCCccHHHHHHHHHHh-cC--CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc----cc
Q psy2764 71 PFELDVFQKQAIIKLE-EH--NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DV 143 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~-~~--~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~----~~ 143 (419)
.++++|||.+|+..+. .+ +..++++|||+|||++++.++..+ +.++|||||+..|+.||.+.|.+++. .+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 4669999999999985 33 478999999999999876655444 56799999999999999999999863 26
Q ss_pred ceEeccceec--CCCcEEEEcHHHHHHHHhcC--------CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcE
Q psy2764 144 GLVTGDFQIN--TTASCLVMTTEILRSMLYRG--------SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCI 213 (419)
Q Consensus 144 ~~~~g~~~~~--~~~~Iiv~Tp~~l~~~~~~~--------~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 213 (419)
+.++|+.... ....|+|+|+.++.....+. ...-..+++||+||||++.. ..+..++..+. ....
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~-a~~R 404 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ-AHCK 404 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC-cCcE
Confidence 6677754322 24789999999875322111 11124678999999999854 33445555554 4567
Q ss_pred EEEeeecCChHHHHHHhcCcCCccEEEEecCCC-------CccceEEEEeCCcccccceeeeccccCcccchhhhHHHHH
Q psy2764 214 VMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR-------PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV 286 (419)
Q Consensus 214 l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (419)
+|+|||+.+..+....+....+..++ ...+. -.+.....+..+. . ..++.....
T Consensus 405 LGLTATP~ReD~~~~~L~~LiGP~vy--e~~~~eLi~~G~LA~~~~~ev~v~~----------------t-~~~~~~yl~ 465 (732)
T TIGR00603 405 LGLTATLVREDDKITDLNFLIGPKLY--EANWMELQKKGFIANVQCAEVWCPM----------------T-PEFYREYLR 465 (732)
T ss_pred EEEeecCcccCCchhhhhhhcCCeee--ecCHHHHHhCCccccceEEEEEecC----------------C-HHHHHHHHH
Confidence 99999998665422111111111111 11110 0111111111110 0 001100000
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHc--CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHH
Q psy2764 287 KCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKS--QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364 (419)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 364 (419)
...+ .......++..++..+..++..+ .+.++||||+++.+++.+++.|... ..+++....+
T Consensus 466 ~~~~------------~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~----~I~G~ts~~E 529 (732)
T TIGR00603 466 ENSR------------KRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKP----FIYGPTSQQE 529 (732)
T ss_pred hcch------------hhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCc----eEECCCCHHH
Confidence 0000 00000123344555655555433 5678999999999999999988421 1233444789
Q ss_pred HHHHHHhcCCc-CCCCchhhHHHHHHHhhhhhhccCCCC-------hhhHHHHHHHHhcCc
Q psy2764 365 FQDSIRNLQNE-DDRALPQVKRLEQLLKNGIGVHHSGIL-------PILKEIVEMLFQKGL 417 (419)
Q Consensus 365 r~~~l~~f~~g-~~~~~~~vlv~t~~l~~GIDi~~~~l~-------~~~r~~ie~~f~~g~ 417 (419)
|.+++++|++| .. ++||+|+++.+|||+|.++.. ...|++++++.|-++
T Consensus 530 R~~il~~Fr~~~~i----~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR 586 (732)
T TIGR00603 530 RMQILQNFQHNPKV----NTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILR 586 (732)
T ss_pred HHHHHHHHHhCCCc----cEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhccccc
Confidence 99999999865 66 889999999999999999872 257788888877654
No 75
>KOG0354|consensus
Probab=99.96 E-value=1.5e-27 Score=232.76 Aligned_cols=162 Identities=22% Similarity=0.259 Sum_probs=125.0
Q ss_pred ccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 62 KVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 62 ~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
+.+.--+..++.+++||.+....++ |+|+||++|||+|||.+|+..+.... .+..++|+++|++-|+.|+...+..+
T Consensus 51 ~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 51 AAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred hhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhc
Confidence 3344445556679999999999888 99999999999999999888877443 35689999999999999999888887
Q ss_pred ccc--cceEecc-ceec------CCCcEEEEcHHHHHHHHhcCCCC-CCCccEEEEeCCcccCC-CcchHHHHHHHHhcC
Q psy2764 140 FQD--VGLVTGD-FQIN------TTASCLVMTTEILRSMLYRGSDV-LRDLEYVIFDEVHYIND-SERGHVWEEVLILLP 208 (419)
Q Consensus 140 ~~~--~~~~~g~-~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~-l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~ 208 (419)
+.. .....|+ .+.. ...+|+|+||+.+.+.+..+... +..+.++||||||+-.. ..|...++.++..-.
T Consensus 130 ~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 130 LIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred cCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 754 2223333 3322 24799999999999888775433 58899999999998643 346666666666655
Q ss_pred CCCcEEEEeeecCChH
Q psy2764 209 KEVCIVMLSATVPNTL 224 (419)
Q Consensus 209 ~~~~~l~~SAT~~~~~ 224 (419)
...|+||+|||+.+..
T Consensus 210 ~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKL 225 (746)
T ss_pred ccccEEEEecCCCccH
Confidence 5669999999998654
No 76
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=1.1e-26 Score=242.24 Aligned_cols=340 Identities=17% Similarity=0.166 Sum_probs=205.7
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcc----ccceE
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLV 146 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~----~~~~~ 146 (419)
+++++||.+++..++.+ ++++++|||+|||+++++++... ...+.++|||+||++|+.|+.+.+++++. .+..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 45799999999887776 99999999999999887776543 44678999999999999999999998764 35667
Q ss_pred eccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 147 TGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 147 ~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
+|+.+.. .+++|+|+||+.+...+..+...+.+++++|+||||++........+........+.+++++||||+
T Consensus 93 ~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP 172 (773)
T PRK13766 93 TGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASP 172 (773)
T ss_pred eCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 7765432 3579999999999887777777888999999999998865432222222333334567899999998
Q ss_pred CChH-HHHHHhcCcCCccEEEEecCCCC--------ccceEEEEeCCccccc--c--------------eeeeccccCc-
Q psy2764 221 PNTL-EFADWVGNTKKTKVYVVSTLKRP--------VPLKHFLYVGPVLEKN--Q--------------LFLIREAEGE- 274 (419)
Q Consensus 221 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~- 274 (419)
.... .+...+.......+.+. ....+ ..+....+..+..... . ..........
T Consensus 173 ~~~~~~i~~~~~~L~i~~v~~~-~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~ 251 (773)
T PRK13766 173 GSDEEKIKEVCENLGIEHVEVR-TEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPD 251 (773)
T ss_pred CCCHHHHHHHHHhCCceEEEEc-CCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC
Confidence 6443 23333322111111111 11111 0111111111110000 0 0000000000
Q ss_pred ccchhhhH---HHHHH---------------------------------------HHhhhhcCCCCCCCCC---------
Q psy2764 275 FLTRGYLA---AKEVK---------------------------------------CRKQLEKGGSGGGKLN--------- 303 (419)
Q Consensus 275 ~~~~~~~~---~~~~~---------------------------------------~~~~~~~~~~~~~~~~--------- 303 (419)
.....+.. .+... ...........+....
T Consensus 252 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~ 331 (773)
T PRK13766 252 VSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPR 331 (773)
T ss_pred cCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHH
Confidence 00000000 00000 0000000000000000
Q ss_pred ------CCCCCCcchhHHHHHHHHHHH----cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHH---------HHHHH
Q psy2764 304 ------GPFTRGAEKNLFISFLNYLRK----SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS---------KIHRF 364 (419)
Q Consensus 304 ------~~~~~~~~~~~~~~l~~~l~~----~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~---------~~~~~ 364 (419)
.-........+++.|.+++.. ....++||||+++..|+.+++.|...|+.....++ ..+.+
T Consensus 332 ~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~ 411 (773)
T PRK13766 332 FRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKE 411 (773)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHH
Confidence 000001112345556666533 56788999999999999999999887776544322 23567
Q ss_pred HHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 365 r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
|.+++++|++|+. ++||+|+++++|+|+|++++ +.....++++..+-|+
T Consensus 412 r~~~~~~F~~g~~----~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR 466 (773)
T PRK13766 412 QIEILDKFRAGEF----NVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR 466 (773)
T ss_pred HHHHHHHHHcCCC----CEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCc
Confidence 8899999999988 99999999999999998886 4555667777666554
No 77
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=9.3e-27 Score=203.96 Aligned_cols=173 Identities=25% Similarity=0.288 Sum_probs=143.9
Q ss_pred chhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH-h----cCCCeEE
Q psy2764 46 WAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-Q----NHKTRTI 120 (419)
Q Consensus 46 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~-~----~~~~~~l 120 (419)
|++ +++++.+. +.+.+.+++. |+++|+++++.+.+++++++.+|||+|||+++++++... . ..+++++
T Consensus 1 ~~~-~~~~~~i~---~~l~~~~~~~---~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~vi 73 (203)
T cd00268 1 FEE-LGLSPELL---RGIYALGFEK---PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQAL 73 (203)
T ss_pred CCc-CCCCHHHH---HHHHHcCCCC---CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEE
Confidence 344 77777776 7777776665 499999999999999999999999999999977775532 2 2467999
Q ss_pred EEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 121 YTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
|++|+++|+.|+...+.++... +..++|+... ..+++|+|+||+.+..++......+++++++|+||+|
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 9999999999999999988653 4456665542 2368999999999999888887888999999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 225 (419)
.+.+.++...+..+.+.++...|++++|||+++..+
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~ 189 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVR 189 (203)
T ss_pred HhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHH
Confidence 988878888899999999889999999999996553
No 78
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=1.3e-25 Score=190.91 Aligned_cols=147 Identities=28% Similarity=0.422 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEcccHHHHHHHHHHHHHhccc----cceEec
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTG 148 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g 148 (419)
||+|.++++.+.+++++++.||||+|||+++..++...... ..++++++|+++|++|+++.+.+++.. +..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999988877654333 359999999999999999999999875 455666
Q ss_pred cceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC--CCCcEEEEee
Q psy2764 149 DFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--KEVCIVMLSA 218 (419)
Q Consensus 149 ~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--~~~~~l~~SA 218 (419)
+.... .+++|+|+||+++..++......+.+++++|+||+|.+.++.+...+..++..+. .+.|++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 65422 4699999999999999988655677799999999999988778888888888774 3699999999
Q ss_pred ecC
Q psy2764 219 TVP 221 (419)
Q Consensus 219 T~~ 221 (419)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 998
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=4.2e-25 Score=223.87 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=112.7
Q ss_pred CCCCccHHHHHHHHHHhc---CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccce
Q psy2764 70 WPFELDVFQKQAIIKLEE---HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGL 145 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~---~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~ 145 (419)
.|++|++.|++|++.+.. ++++++.||||||||.+|+.++......+.++||++|+++|+.|+++++++.++ .+..
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 456799999999999976 478999999999999998877776677789999999999999999999998765 4777
Q ss_pred Eeccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcc-h--HHHHHH--HHhcCC
Q psy2764 146 VTGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSER-G--HVWEEV--LILLPK 209 (419)
Q Consensus 146 ~~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~-~--~~~~~i--~~~~~~ 209 (419)
++|+.+.. ...+|+|+|+..+. ..+.+++++|+||+|...-.+. . ...+.+ ......
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 88875432 34799999998764 3578899999999997642221 1 112222 223346
Q ss_pred CCcEEEEeeecC
Q psy2764 210 EVCIVMLSATVP 221 (419)
Q Consensus 210 ~~~~l~~SAT~~ 221 (419)
+.+++++|||++
T Consensus 294 ~~~~il~SATps 305 (679)
T PRK05580 294 NIPVVLGSATPS 305 (679)
T ss_pred CCCEEEEcCCCC
Confidence 899999999975
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.7e-25 Score=216.31 Aligned_cols=119 Identities=19% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+..|+++|..+++.++.|+ |+.+.||+|||++|.+++......+++++|++||++||.|.++.+..++.. ++++
T Consensus 101 g~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i 178 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCV 178 (656)
T ss_pred CCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 4557999999999999998 999999999999988888776667899999999999999999999988764 6667
Q ss_pred eccceec-----CCCcEEEEcHHHH-HHHHhcC-------------------------CCCCCCccEEEEeCCccc
Q psy2764 147 TGDFQIN-----TTASCLVMTTEIL-RSMLYRG-------------------------SDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 147 ~g~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~-------------------------~~~l~~~~~lIiDE~h~l 191 (419)
+|+.+.. .+++|+++|...+ .+++..+ ....+.+.+.||||+|.+
T Consensus 179 ~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 179 VEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred eCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccce
Confidence 7775432 3589999998755 2222111 123466889999999965
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.9e-25 Score=215.02 Aligned_cols=267 Identities=16% Similarity=0.249 Sum_probs=194.5
Q ss_pred cccccCCCCccHHHHHHHHHHhcC------CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 65 IMAHTWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 65 ~~~~~~~~~~~~~Q~~ai~~~~~~------~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
+.--..||+||..|++++..|..+ .+-++++..|||||+++++++......|.++..++||.-||.|.++.+.+
T Consensus 254 ~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 254 KFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred HHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHH
Confidence 333467899999999999998533 57899999999999999999999999999999999999999999999999
Q ss_pred hccc----cceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHH
Q psy2764 139 TFQD----VGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203 (419)
Q Consensus 139 ~~~~----~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i 203 (419)
++.+ +++++|.... +.+.+|+|+|..-+ +....++++.++|+||-|++.-.+ +..
T Consensus 334 ~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRFGV~Q-----R~~ 403 (677)
T COG1200 334 WLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRFGVHQ-----RLA 403 (677)
T ss_pred HhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccccHHH-----HHH
Confidence 9987 6668886542 23489999998655 556678999999999999865433 333
Q ss_pred HHhcCC-CCcEEEEeee-cCChHHHHHHhcCcCCccEEEEecC-CCCccceEEEEeCCcccccceeeeccccCcccchhh
Q psy2764 204 LILLPK-EVCIVMLSAT-VPNTLEFADWVGNTKKTKVYVVSTL-KRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGY 280 (419)
Q Consensus 204 ~~~~~~-~~~~l~~SAT-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (419)
+..-+. .+.++.|||| +|+...+.-+=+.. +..++.. ....|+....+..
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDld----vS~IdElP~GRkpI~T~~i~~----------------------- 456 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLALTAFGDLD----VSIIDELPPGRKPITTVVIPH----------------------- 456 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHHHHHhcccc----chhhccCCCCCCceEEEEecc-----------------------
Confidence 333344 6899999999 56666655432221 1111111 1112333332221
Q ss_pred hHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchh--------hHHHHHHHhhcC--
Q psy2764 281 LAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRK--------RCDQNAANLLSM-- 350 (419)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~--------~~~~l~~~L~~~-- 350 (419)
.....+++.+.+-+. ++.++-+-|+-++ .|..++..|+..
T Consensus 457 ----------------------------~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~ 506 (677)
T COG1200 457 ----------------------------ERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLP 506 (677)
T ss_pred ----------------------------ccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcc
Confidence 112233444444443 5667999998654 466777777743
Q ss_pred CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCC
Q psy2764 351 DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL 402 (419)
Q Consensus 351 ~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~ 402 (419)
++.....|+.+ ..++++++++|++|+. +|||+|.+++-|||+|++++.
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~e~----~ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEGEI----DILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcCCC----cEEEEeeEEEecccCCCCeEE
Confidence 34455567777 7889999999999999 999999999999999999986
No 82
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.3e-24 Score=187.86 Aligned_cols=285 Identities=23% Similarity=0.262 Sum_probs=200.6
Q ss_pred CccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc--cceE
Q psy2764 73 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLV 146 (419)
Q Consensus 73 ~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~~~~ 146 (419)
++++.|+.+-..+ .+.++.++.|-||+|||....-+|-...+.|.++.+..|....|.+++.++++.|.+ +.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 4899999887654 678999999999999999866677788999999999999999999999999999986 6679
Q ss_pred eccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHH
Q psy2764 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEF 226 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 226 (419)
+|+.....+.+++|+|...++++. +.++++||||+|.+.-.........+-.....+.-.|.+|||+++..+-
T Consensus 177 yg~S~~~fr~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r 249 (441)
T COG4098 177 YGDSDSYFRAPLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLER 249 (441)
T ss_pred ecCCchhccccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHH
Confidence 999887777999999999887544 3578999999998743222222223333444577789999999876541
Q ss_pred HHHhcCcCCccEEE-EecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCC
Q psy2764 227 ADWVGNTKKTKVYV-VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGP 305 (419)
Q Consensus 227 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (419)
.-.-+. ...+.+ ...-..|.|+..++...+..++.++-
T Consensus 250 ~~~~g~--~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~--------------------------------------- 288 (441)
T COG4098 250 KILKGN--LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRN--------------------------------------- 288 (441)
T ss_pred HhhhCC--eeEeecchhhcCCCCCCCceEEeccHHHHhhhc---------------------------------------
Confidence 111111 000000 11223455555555544431111110
Q ss_pred CCCCcchhHHHHHHHHHHH--cCCCCEEEEEcchhhHHHHHHHhh-cCCCCC-hhHHHHHHHHHHHHHHhcCCcCCCCch
Q psy2764 306 FTRGAEKNLFISFLNYLRK--SQNLPVVLFTLSRKRCDQNAANLL-SMDFST-ATEKSKIHRFFQDSIRNLQNEDDRALP 381 (419)
Q Consensus 306 ~~~~~~~~~~~~l~~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~-~~~~~~-~~~~~~~~~~r~~~l~~f~~g~~~~~~ 381 (419)
.+--.+..+++. ..+.+++||+++++..+.++..|+ +.+... +..++. ...|.+.+++||+|..
T Consensus 289 -------kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~-d~~R~EkV~~fR~G~~---- 356 (441)
T COG4098 289 -------KLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE-DQHRKEKVEAFRDGKI---- 356 (441)
T ss_pred -------cCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc-CccHHHHHHHHHcCce----
Confidence 001244555533 455789999999999999999994 444333 223332 4468899999999999
Q ss_pred hhHHHHHHHhhhhhhccCCCC--------hhhHHHHHHHHhcCc
Q psy2764 382 QVKRLEQLLKNGIGVHHSGIL--------PILKEIVEMLFQKGL 417 (419)
Q Consensus 382 ~vlv~t~~l~~GIDi~~~~l~--------~~~r~~ie~~f~~g~ 417 (419)
.+|++|.+|+||+-+|+++.- ..+-.+|+-+.+-|+
T Consensus 357 ~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGR 400 (441)
T COG4098 357 TLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGR 400 (441)
T ss_pred EEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccC
Confidence 999999999999999998862 344556666666654
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=2.3e-24 Score=220.27 Aligned_cols=305 Identities=17% Similarity=0.135 Sum_probs=181.1
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHh----cc--c
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRET----FQ--D 142 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~----~~--~ 142 (419)
.++|+|+|+.+......+..+++.||||+|||.+++.++..+.. ...+++|..||+++++|+++++.++ +. .
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45689999988655455678999999999999998777665433 3479999999999999999998753 32 2
Q ss_pred cceEeccceec-------------------------------C---CCcEEEEcHHHHHHHHhcC-CCCCCCc----cEE
Q psy2764 143 VGLVTGDFQIN-------------------------------T---TASCLVMTTEILRSMLYRG-SDVLRDL----EYV 183 (419)
Q Consensus 143 ~~~~~g~~~~~-------------------------------~---~~~Iiv~Tp~~l~~~~~~~-~~~l~~~----~~l 183 (419)
+.+.+|....+ + -.+|+|||.+.++...... ...++.+ ++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 55566543210 1 1689999999887544332 2233333 489
Q ss_pred EEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEeeecCChHH--HHHHhcCcCCccEEEEecCCCCccc---------e
Q psy2764 184 IFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLSATVPNTLE--FADWVGNTKKTKVYVVSTLKRPVPL---------K 251 (419)
Q Consensus 184 IiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~---------~ 251 (419)
||||+|.+.. .....+..+++.+. ....+|+||||+|.... +.+.++.... . ......|. .
T Consensus 444 IiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~--~----~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 444 IVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP--V----ELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred EEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc--c----ccccccccccccccccce
Confidence 9999998743 34455566666543 46789999999987653 3333222100 0 00001111 0
Q ss_pred EEEEeCCcc-cccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCE
Q psy2764 252 HFLYVGPVL-EKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPV 330 (419)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 330 (419)
.+....... ........+..... . ........++.+.+.+ ..++++
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~---~----------------------------~~~~~~~~l~~i~~~~--~~g~~v 563 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICL---A----------------------------DMLPDLTLLQRMIAAA--NAGAQV 563 (878)
T ss_pred eeeccccccccCcceEEEEEeecc---c----------------------------cccCHHHHHHHHHHHH--hcCCEE
Confidence 000000000 00000000000000 0 0000112223333332 345679
Q ss_pred EEEEcchhhHHHHHHHhhcCC---CCChhHHHHH-HHHH----HHHHHhc-CCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 331 VLFTLSRKRCDQNAANLLSMD---FSTATEKSKI-HRFF----QDSIRNL-QNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 331 LIF~~t~~~~~~l~~~L~~~~---~~~~~~~~~~-~~~r----~~~l~~f-~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
||||||++.|+++++.|++.+ ......|+.+ ..+| +++++.| ++|+.. ...|||+|+++++|+||+ .++
T Consensus 564 LVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~-~~~ILVaTQViE~GLDId-~Dv 641 (878)
T PRK09694 564 CLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRN-QGRILVATQVVEQSLDLD-FDW 641 (878)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcC-CCeEEEECcchhheeecC-CCe
Confidence 999999999999999999764 3334444443 4455 4578888 555421 126999999999999995 454
Q ss_pred C----hhhHHHHHHHHhcCc
Q psy2764 402 L----PILKEIVEMLFQKGL 417 (419)
Q Consensus 402 ~----~~~r~~ie~~f~~g~ 417 (419)
. ...-.+|+.+.|.|+
T Consensus 642 lItdlaPidsLiQRaGR~~R 661 (878)
T PRK09694 642 LITQLCPVDLLFQRLGRLHR 661 (878)
T ss_pred EEECCCCHHHHHHHHhccCC
Confidence 2 224477777776654
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1.2e-24 Score=215.06 Aligned_cols=120 Identities=19% Similarity=0.145 Sum_probs=96.4
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+..|+++|..+...+..|+ ++.++||+|||+++.+++....-.+.++.|++||+.||.|.++.+..++.. ++++
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i 131 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLI 131 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3446888988888877776 999999999999988887543345778999999999999999999998876 5566
Q ss_pred eccceec-----CCCcEEEEcHHHH-HHHHhcC------CCCCCCccEEEEeCCcccC
Q psy2764 147 TGDFQIN-----TTASCLVMTTEIL-RSMLYRG------SDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 147 ~g~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~------~~~l~~~~~lIiDE~h~l~ 192 (419)
.|+.+.. ..++|+++||+++ .+++..+ ...++.+.++||||+|.++
T Consensus 132 ~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 132 LSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred eCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 7665432 2489999999999 7776654 2467889999999999764
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=5.1e-24 Score=213.97 Aligned_cols=119 Identities=23% Similarity=0.241 Sum_probs=95.8
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+..|+++|..+...+..|+ ++.+.||+|||++|++++....-.+.++.|++||++||.|.++.+..++.. ++++
T Consensus 76 g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i 153 (790)
T PRK09200 76 GMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLN 153 (790)
T ss_pred CCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3446999999998888776 999999999999988887765567899999999999999999999998775 5667
Q ss_pred eccce-e-----cCCCcEEEEcHHHH-HHHHhcC------CCCCCCccEEEEeCCccc
Q psy2764 147 TGDFQ-I-----NTTASCLVMTTEIL-RSMLYRG------SDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 147 ~g~~~-~-----~~~~~Iiv~Tp~~l-~~~~~~~------~~~l~~~~~lIiDE~h~l 191 (419)
.|+.+ . ..+++|+++||+.+ .+++... ...++.+.++|+||||.+
T Consensus 154 ~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsi 211 (790)
T PRK09200 154 FSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSI 211 (790)
T ss_pred eCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccc
Confidence 77665 2 23589999999888 3333322 235688999999999965
No 86
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=8.7e-24 Score=210.39 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~ 149 (419)
++|+|.|++..+..++..++.++||+|||++|++++......+..++|++|+++||.|.++.+..+... +++..++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~ 148 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVD 148 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECC
Confidence 466666666665444457999999999999988887655556778999999999999999999777554 4444443
Q ss_pred c-----e-----ecCCCcEEEEcHHHH-HHHHhc------CCCCCCCccEEEEeCCccc
Q psy2764 150 F-----Q-----INTTASCLVMTTEIL-RSMLYR------GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 150 ~-----~-----~~~~~~Iiv~Tp~~l-~~~~~~------~~~~l~~~~~lIiDE~h~l 191 (419)
. . ...+++|+++||+++ .+++.. ....++.+.++|+||||.+
T Consensus 149 s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsI 207 (762)
T TIGR03714 149 DPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSV 207 (762)
T ss_pred CCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhH
Confidence 1 1 113689999999999 444422 2345778999999999977
No 87
>KOG0351|consensus
Probab=99.91 E-value=1.9e-24 Score=220.27 Aligned_cols=282 Identities=16% Similarity=0.134 Sum_probs=208.2
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceec
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQIN 153 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~ 153 (419)
+++-|.+||..++.|+++++.+|||+||++||.++.... ++.+|||.|..+|++++...+....-....+.++....
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~ 341 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAA 341 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHH
Confidence 799999999999999999999999999999976655444 44899999999999999999976665555566654321
Q ss_pred -------------CCCcEEEEcHHHHHHHH--hcCCCCCCC---ccEEEEeCCcccCCCc--chHHHHHHHHhcC--CCC
Q psy2764 154 -------------TTASCLVMTTEILRSML--YRGSDVLRD---LEYVIFDEVHYINDSE--RGHVWEEVLILLP--KEV 211 (419)
Q Consensus 154 -------------~~~~Iiv~Tp~~l~~~~--~~~~~~l~~---~~~lIiDE~h~l~~~~--~~~~~~~i~~~~~--~~~ 211 (419)
...+|+..|||++...- ......+.. +.++||||||++..|+ |++.+..+..... ..+
T Consensus 342 ~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~v 421 (941)
T KOG0351|consen 342 ERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGV 421 (941)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCC
Confidence 24789999999886321 111123333 8899999999998876 7887776654332 358
Q ss_pred cEEEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHH
Q psy2764 212 CIVMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCR 289 (419)
Q Consensus 212 ~~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (419)
.++++|||....+ ++++-|+..... ++...+.+.++...+.....
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~---~~~~sfnR~NL~yeV~~k~~------------------------------ 468 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPE---LFKSSFNRPNLKYEVSPKTD------------------------------ 468 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcc---eecccCCCCCceEEEEeccC------------------------------
Confidence 9999999986554 577777764333 22333333333222221110
Q ss_pred hhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHH-HHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHH
Q psy2764 290 KQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYL-RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQD 367 (419)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~ 367 (419)
+.....+.+.. .......+||||.++..|+.++..|+..|+.+...|..+ ..+|..
T Consensus 469 ----------------------~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~ 526 (941)
T KOG0351|consen 469 ----------------------KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERET 526 (941)
T ss_pred ----------------------ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHH
Confidence 11112223333 334557899999999999999999999999888866666 889999
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
+...|..++. +|++||=++..|||-|+| +||..--.+.++..+.|+
T Consensus 527 Vq~~w~~~~~----~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 527 VQKAWMSDKI----RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGR 578 (941)
T ss_pred HHHHHhcCCC----eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCc
Confidence 9999999998 999999999999998866 468888889998888875
No 88
>KOG0950|consensus
Probab=99.91 E-value=6.5e-24 Score=209.07 Aligned_cols=305 Identities=25% Similarity=0.357 Sum_probs=207.1
Q ss_pred ccHHHHHHH--HHHhcCCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhccccce----E
Q psy2764 74 LDVFQKQAI--IKLEEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL----V 146 (419)
Q Consensus 74 ~~~~Q~~ai--~~~~~~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~----~ 146 (419)
+..+|.+++ +.+++++|.+..+||+.|||+++.+.+. ........++.+.|..+.+.+-...+..+..+.|. +
T Consensus 224 ~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y 303 (1008)
T KOG0950|consen 224 LFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEY 303 (1008)
T ss_pred HHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhh
Confidence 688999988 4568999999999999999999888766 34556788999999999999999999888777554 3
Q ss_pred eccce---ecCCCcEEEEcHHHHHHHHhc--CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-----CCCCcEEEE
Q psy2764 147 TGDFQ---INTTASCLVMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-----PKEVCIVML 216 (419)
Q Consensus 147 ~g~~~---~~~~~~Iiv~Tp~~l~~~~~~--~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-----~~~~~~l~~ 216 (419)
.|... ..+.-++.|||.|+...++.. ....+..+++||+||.|++.+.+++..++.++..+ ....|++||
T Consensus 304 ~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGM 383 (1008)
T KOG0950|consen 304 AGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGM 383 (1008)
T ss_pred cccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeee
Confidence 33332 234578999999988765544 23456789999999999999999999999888653 234779999
Q ss_pred eeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCC
Q psy2764 217 SATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG 296 (419)
Q Consensus 217 SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (419)
|||++|-..+..|+.. +++...++|+++..++..............+ ..+..... .
T Consensus 384 SATi~N~~lL~~~L~A------~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~l--------r~ia~l~~----------~ 439 (1008)
T KOG0950|consen 384 SATIPNNSLLQDWLDA------FVYTTRFRPVPLKEYIKPGSLIYESSRNKVL--------REIANLYS----------S 439 (1008)
T ss_pred ecccCChHHHHHHhhh------hheecccCcccchhccCCCcccccchhhHHH--------HHhhhhhh----------h
Confidence 9999999999999996 5667889999998876544331111000000 00000000 0
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHH--H---HHHHHHh
Q psy2764 297 SGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHR--F---FQDSIRN 371 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~--~---r~~~l~~ 371 (419)
+.+ ..+.+.......+.+ ..+.++||||+++..|+.+|..+... +..........+ + -...++.
T Consensus 440 ~~g--------~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~~~-vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 440 NLG--------DEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIAKK-VPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred hcc--------cCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHHHH-hhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 000 011111112222222 23345999999999999999666543 211111100000 1 1123444
Q ss_pred cCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 372 LQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 372 f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
...+.+ .+ ....+..|+.+||+++...+|++||..|++|.++
T Consensus 509 ~~~~ld----~V--l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~ 550 (1008)
T KOG0950|consen 509 IPGILD----PV--LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIF 550 (1008)
T ss_pred CCcccc----hH--HheeccccceecccccccchHHHHHHHHHhcCeE
Confidence 443333 33 4566889999999999999999999999999874
No 89
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.91 E-value=7.3e-23 Score=213.58 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=169.5
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCC--CeEEEEccc----HHHHHHHHHHHHHh-ccccce
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHK--TRTIYTSPI----KALSNQKYRDFRET-FQDVGL 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~--~~~lii~Pt----~~L~~q~~~~~~~~-~~~~~~ 145 (419)
.+.+-.+.+..+..++.++++|+||||||+. ++...+ ...+ .++++..|. ++||.++.+.+... +..+|.
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 3666667777888889999999999999974 553222 2222 356666785 56666666666542 333444
Q ss_pred Eec-cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc-ccCCCcchH-HHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 146 VTG-DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH-YINDSERGH-VWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 146 ~~g-~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h-~l~~~~~~~-~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
-.. +.....+++|+|+||++|+..+.... .+.++++||||||| +.++.++.. .+..++.. .++.|+++||||++
T Consensus 153 ~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKvILmSATid- 229 (1294)
T PRK11131 153 KVRFNDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSATID- 229 (1294)
T ss_pred eecCccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCceEEEeeCCCC-
Confidence 222 22344578999999999999887654 48999999999999 566655432 22222221 24689999999995
Q ss_pred hHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCC
Q psy2764 223 TLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKL 302 (419)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (419)
...+.++++.. .+..+ ..+..++++.+....... ..
T Consensus 230 ~e~fs~~F~~a---pvI~V--~Gr~~pVei~y~p~~~~~------------~~--------------------------- 265 (1294)
T PRK11131 230 PERFSRHFNNA---PIIEV--SGRTYPVEVRYRPIVEEA------------DD--------------------------- 265 (1294)
T ss_pred HHHHHHHcCCC---CEEEE--cCccccceEEEeeccccc------------ch---------------------------
Confidence 45677776542 12222 233344444332211100 00
Q ss_pred CCCCCCCcchhHHHHHHHH---HHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCCh---hHHHHH-HHHHHHHHHhcCCc
Q psy2764 303 NGPFTRGAEKNLFISFLNY---LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTA---TEKSKI-HRFFQDSIRNLQNE 375 (419)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~---l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~---~~~~~~-~~~r~~~l~~f~~g 375 (419)
...+....+.+. +.....+.+||||++..+++.+++.|...++... ..++.+ .++|.++++.. |
T Consensus 266 -------~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g 336 (1294)
T PRK11131 266 -------TERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S 336 (1294)
T ss_pred -------hhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C
Confidence 001111222222 2234556799999999999999999998876532 244444 67788888763 5
Q ss_pred CCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 376 DDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 376 ~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
.. +|++||+++++|||||.++.
T Consensus 337 ~r----kIIVATNIAEtSITIpgI~y 358 (1294)
T PRK11131 337 GR----RIVLATNVAETSLTVPGIKY 358 (1294)
T ss_pred Ce----eEEEeccHHhhccccCcceE
Confidence 55 89999999999999997654
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=2.2e-23 Score=218.90 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=178.7
Q ss_pred cccCCCCccHHHHHHHHHHh-----cCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 67 AHTWPFELDVFQKQAIIKLE-----EHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 67 ~~~~~~~~~~~Q~~ai~~~~-----~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
.+...+.++++|.+|+..+. ..+.+++++|||||||.+++..+..+. ....++|||+|+++|+.|+.+.|...
T Consensus 407 ~~~~~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 407 PFDYGLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 34334568999999998763 346899999999999988666655443 34579999999999999999999987
Q ss_pred ccccc----eEe-----ccceecCCCcEEEEcHHHHHHHHhcC-----CCCCCCccEEEEeCCcccCC--C---------
Q psy2764 140 FQDVG----LVT-----GDFQINTTASCLVMTTEILRSMLYRG-----SDVLRDLEYVIFDEVHYIND--S--------- 194 (419)
Q Consensus 140 ~~~~~----~~~-----g~~~~~~~~~Iiv~Tp~~l~~~~~~~-----~~~l~~~~~lIiDE~h~l~~--~--------- 194 (419)
..... ... ++........|+|+|..++.+.+... ...+..+++||+||||+-.. .
T Consensus 487 ~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 43211 111 11122345899999999987765432 13467889999999998421 0
Q ss_pred ----cchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEec--C-CCC--c----cceEEEEe-CCc-
Q psy2764 195 ----ERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVST--L-KRP--V----PLKHFLYV-GPV- 259 (419)
Q Consensus 195 ----~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~--~----~~~~~~~~-~~~- 259 (419)
.+...+..++.+. +...|||||||.. ...++++. .++.+.. . ... + |....... ...
T Consensus 567 ~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi 638 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGE----PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGI 638 (1123)
T ss_pred chhhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCC----eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccc
Confidence 0124456666654 3577999999963 23344443 1222111 0 000 0 11111000 000
Q ss_pred -ccccceeeeccc-cC-----------cccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcC
Q psy2764 260 -LEKNQLFLIREA-EG-----------EFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQ 326 (419)
Q Consensus 260 -~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 326 (419)
....+.....+. .+ .+...++...+ ......+.+...+.+.+....
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~v---------------------i~~~~~~~i~~~l~~~l~~~~ 697 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRV---------------------ITESFNRVVCEELAKYLDPTG 697 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHH---------------------hhHHHHHHHHHHHHHHHhccC
Confidence 000000000000 00 00111111100 011122334455555554445
Q ss_pred CCCEEEEEcchhhHHHHHHHhhcC------CCCCh---hHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhc
Q psy2764 327 NLPVVLFTLSRKRCDQNAANLLSM------DFSTA---TEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVH 397 (419)
Q Consensus 327 ~~~~LIF~~t~~~~~~l~~~L~~~------~~~~~---~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~ 397 (419)
.+++||||.++++|+.+++.|.+. +.... ...+.. ..+.+++++|+++..+ +|+|+++++.+|||+|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~-~~~~~li~~Fk~~~~p---~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSI-DKPDQLIRRFKNERLP---NIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCc-cchHHHHHHHhCCCCC---eEEEEecccccCCCcc
Confidence 578999999999999999987653 22211 122222 3477899999987753 6899999999999999
Q ss_pred cCCCC
Q psy2764 398 HSGIL 402 (419)
Q Consensus 398 ~~~l~ 402 (419)
.+...
T Consensus 774 ~v~~v 778 (1123)
T PRK11448 774 SICNL 778 (1123)
T ss_pred cccEE
Confidence 88753
No 91
>KOG0352|consensus
Probab=99.90 E-value=4.5e-24 Score=192.49 Aligned_cols=267 Identities=17% Similarity=0.154 Sum_probs=184.5
Q ss_pred cHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce--
Q psy2764 75 DVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ-- 151 (419)
Q Consensus 75 ~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~-- 151 (419)
++.|.+|+..+ ...+||.|++|||+||++||.++.+.. +..+||+.|..+|+.++.+.+.++-..+.-+.+..+
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTV 98 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHH
Confidence 89999999987 667899999999999999977765544 348999999999999999999998766555555432
Q ss_pred -----------ecCCCcEEEEcHHHHHHHHhc----CCCCCCCccEEEEeCCcccCCCc--chHHHHHHHHhc--CCCCc
Q psy2764 152 -----------INTTASCLVMTTEILRSMLYR----GSDVLRDLEYVIFDEVHYINDSE--RGHVWEEVLILL--PKEVC 212 (419)
Q Consensus 152 -----------~~~~~~Iiv~Tp~~l~~~~~~----~~~~l~~~~~lIiDE~h~l~~~~--~~~~~~~i~~~~--~~~~~ 212 (419)
...+..++..||+....-..+ ....-..+.++|+||||++..|+ |++.+-.+-+.- -....
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vp 178 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVP 178 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCc
Confidence 234578999999976532222 22223457899999999998876 677665443321 24688
Q ss_pred EEEEeeecCChHH--HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHh
Q psy2764 213 IVMLSATVPNTLE--FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRK 290 (419)
Q Consensus 213 ~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (419)
.+++|||-+..++ +..-|....+..++.- +.++. ++ |.-.+|...+..
T Consensus 179 wvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~----------------NL---------FYD~~~K~~I~D---- 228 (641)
T KOG0352|consen 179 WVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRD----------------NL---------FYDNHMKSFITD---- 228 (641)
T ss_pred eEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhh----------------hh---------hHHHHHHHHhhh----
Confidence 8999999877653 4443433222221110 01110 00 001111111110
Q ss_pred hhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHH-------------HcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhH
Q psy2764 291 QLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLR-------------KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATE 357 (419)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------------~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~ 357 (419)
.+..|.+... ....+..||||.||++|+.+|-.|...|+++...
T Consensus 229 -----------------------~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AY 285 (641)
T KOG0352|consen 229 -----------------------CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAY 285 (641)
T ss_pred -----------------------HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHH
Confidence 0111111111 1122679999999999999999999999999887
Q ss_pred HHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 358 KSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 358 ~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
|..+ ..+|..+-+.+-+++. .|+++|..+..|+|=|+|..
T Consensus 286 HAGLK~~ERTeVQe~WM~~~~----PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 286 HAGLKKKERTEVQEKWMNNEI----PVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred hcccccchhHHHHHHHhcCCC----CEEEEEeccccccCCcceeE
Confidence 7666 7899999999999999 89999999999999998865
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.6e-23 Score=201.88 Aligned_cols=122 Identities=20% Similarity=0.137 Sum_probs=92.6
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEeccceec-----------CCCcEE
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTGDFQIN-----------TTASCL 159 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g~~~~~-----------~~~~Ii 159 (419)
++.||||||||++|+.++......+.++||++|+++|+.|+++++++.++ .+.+++|+.+.. ...+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 47899999999998777777777889999999999999999999998765 477788865422 247899
Q ss_pred EEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc---ch---HHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 160 VMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE---RG---HVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 160 v~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~---~~---~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
|+|+..+. ..+.++++|||||+|...-.+ .. ..+....+. ..+.+++++|||++
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPs 140 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPS 140 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCC
Confidence 99998663 357889999999999764322 11 112222222 35799999999965
No 93
>KOG0353|consensus
Probab=99.89 E-value=3.6e-23 Score=184.15 Aligned_cols=268 Identities=14% Similarity=0.136 Sum_probs=193.1
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce--
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ-- 151 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~-- 151 (419)
++|.|..+|...+.+++++++.|||.||++||.++.+.. ...+|+|+|..+|++++.-.+++++-....+....+
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedqil~lkqlgi~as~lnansske 171 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKE 171 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHH
Confidence 699999999999999999999999999999987776544 567999999999999999999998766444333321
Q ss_pred -----------ecCCCcEEEEcHHHHHH---HHhc--CCCCCCCccEEEEeCCcccCCCc--chHHHH--HHHHhcCCCC
Q psy2764 152 -----------INTTASCLVMTTEILRS---MLYR--GSDVLRDLEYVIFDEVHYINDSE--RGHVWE--EVLILLPKEV 211 (419)
Q Consensus 152 -----------~~~~~~Iiv~Tp~~l~~---~~~~--~~~~l~~~~~lIiDE~h~l~~~~--~~~~~~--~i~~~~~~~~ 211 (419)
.+....++..||+++.. ++.+ .......+.++-+||+|+...|+ |++.+. .++.+--++.
T Consensus 172 ~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~ 251 (695)
T KOG0353|consen 172 EAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGA 251 (695)
T ss_pred HHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCC
Confidence 22346799999998863 2222 22345678899999999998776 555543 2333333589
Q ss_pred cEEEEeeecCChH-H-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHH
Q psy2764 212 CIVMLSATVPNTL-E-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCR 289 (419)
Q Consensus 212 ~~l~~SAT~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (419)
.++++|||-.+.+ + ..+.+.. . ..+.|...++...+...+...
T Consensus 252 ~iigltatatn~vl~d~k~il~i-e--~~~tf~a~fnr~nl~yev~qk-------------------------------- 296 (695)
T KOG0353|consen 252 PIIGLTATATNHVLDDAKDILCI-E--AAFTFRAGFNRPNLKYEVRQK-------------------------------- 296 (695)
T ss_pred ceeeeehhhhcchhhHHHHHHhH-H--hhheeecccCCCCceeEeeeC--------------------------------
Confidence 9999999987654 2 3333322 1 123333344333333322222
Q ss_pred hhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHH
Q psy2764 290 KQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQD 367 (419)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~ 367 (419)
+....+.++.+..++.. ..+...||||-+++.|+.++..|++.|+.+...|..+ ++.+.-
T Consensus 297 ------------------p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~ 358 (695)
T KOG0353|consen 297 ------------------PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSG 358 (695)
T ss_pred ------------------CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccc
Confidence 22334455666666643 3456689999999999999999999999988877666 666777
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
.-+.+..|++ +|+|+|-++..|||=|++..
T Consensus 359 ~hq~w~a~ei----qvivatvafgmgidkpdvrf 388 (695)
T KOG0353|consen 359 AHQGWIAGEI----QVIVATVAFGMGIDKPDVRF 388 (695)
T ss_pred ccccccccce----EEEEEEeeecccCCCCCeeE
Confidence 7788888888 99999999999999887754
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.89 E-value=1.6e-21 Score=204.30 Aligned_cols=268 Identities=13% Similarity=0.107 Sum_probs=175.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEec--
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTG-- 148 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g-- 148 (419)
..+..+.+..+..++.++++|+||||||+. ++...+.. ...++++..|.|--|..++.++.+..+ .+|...|
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 555566777788889999999999999975 44333321 234677888999999999998877654 3555555
Q ss_pred ---cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc-ccCCCcchH-HHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 149 ---DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH-YINDSERGH-VWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 149 ---~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h-~l~~~~~~~-~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
+.....+..|.++|+++|+..+.... .+.++++|||||+| +.++..+.- .+..++.. .++.|+|+||||++ .
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld-~ 223 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATID-P 223 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcC-H
Confidence 22344568899999999998886654 58999999999999 466555433 24444333 35789999999995 4
Q ss_pred HHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCC
Q psy2764 224 LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLN 303 (419)
Q Consensus 224 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (419)
..++++++.. .+.. ...+..|++..+......... ...++
T Consensus 224 ~~fa~~F~~a---pvI~--V~Gr~~PVev~Y~~~~~~~~~------------~~~~~----------------------- 263 (1283)
T TIGR01967 224 ERFSRHFNNA---PIIE--VSGRTYPVEVRYRPLVEEQED------------DDLDQ----------------------- 263 (1283)
T ss_pred HHHHHHhcCC---CEEE--ECCCcccceeEEecccccccc------------hhhhH-----------------------
Confidence 5688877642 1222 223334444433211100000 00000
Q ss_pred CCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCC---ChhHHHHH-HHHHHHHHHhcCCcCCCC
Q psy2764 304 GPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFS---TATEKSKI-HRFFQDSIRNLQNEDDRA 379 (419)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~---~~~~~~~~-~~~r~~~l~~f~~g~~~~ 379 (419)
...+...+.+++. ...+.+|||+++..+++.+++.|...+.. ....++.+ .++|.++++.+. ..
T Consensus 264 -------~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~r-- 331 (1283)
T TIGR01967 264 -------LEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GR-- 331 (1283)
T ss_pred -------HHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--Cc--
Confidence 0111223333332 34467999999999999999999887543 22345554 667777765442 12
Q ss_pred chhhHHHHHHHhhhhhhccCCC
Q psy2764 380 LPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 380 ~~~vlv~t~~l~~GIDi~~~~l 401 (419)
+|++||+++++|||||++..
T Consensus 332 --kIVLATNIAEtSLTIpgV~y 351 (1283)
T TIGR01967 332 --RIVLATNVAETSLTVPGIHY 351 (1283)
T ss_pred --eEEEeccHHHhccccCCeeE
Confidence 89999999999999997653
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=2.1e-21 Score=197.28 Aligned_cols=267 Identities=19% Similarity=0.238 Sum_probs=193.9
Q ss_pred cccccCCCCccHHHHHHHHHHhc------CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 65 IMAHTWPFELDVFQKQAIIKLEE------HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 65 ~~~~~~~~~~~~~Q~~ai~~~~~------~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
++.-.|||+-|+=|.+||..+.+ -.|-++||..|.|||.+|.-++......|++|.++|||.-||+|.++.|+.
T Consensus 586 ~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 586 EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHH
Confidence 34557889999999999998842 259999999999999999988888889999999999999999999999999
Q ss_pred hccccceEeccce---------------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHH
Q psy2764 139 TFQDVGLVTGDFQ---------------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203 (419)
Q Consensus 139 ~~~~~~~~~g~~~---------------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i 203 (419)
.|.+..+-.+..+ ...+.||||+|..-| .....+++++++||||-|++.- .-..-
T Consensus 666 RF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGV-----k~KEk 735 (1139)
T COG1197 666 RFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGV-----KHKEK 735 (1139)
T ss_pred HhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCc-----cHHHH
Confidence 9988554333221 123589999997544 5556789999999999998643 22334
Q ss_pred HHhcCCCCcEEEEeee-cCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhH
Q psy2764 204 LILLPKEVCIVMLSAT-VPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLA 282 (419)
Q Consensus 204 ~~~~~~~~~~l~~SAT-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (419)
+..++.++-++-|||| +|+...++- .+. ..-.+ .-.+..+..|+..++...+.
T Consensus 736 LK~Lr~~VDvLTLSATPIPRTL~Msm-~Gi-RdlSv-I~TPP~~R~pV~T~V~~~d~----------------------- 789 (1139)
T COG1197 736 LKELRANVDVLTLSATPIPRTLNMSL-SGI-RDLSV-IATPPEDRLPVKTFVSEYDD----------------------- 789 (1139)
T ss_pred HHHHhccCcEEEeeCCCCcchHHHHH-hcc-hhhhh-ccCCCCCCcceEEEEecCCh-----------------------
Confidence 4556678999999999 567766432 111 00000 11233344455444332222
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCC--CChhHHHH
Q psy2764 283 AKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDF--STATEKSK 360 (419)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~--~~~~~~~~ 360 (419)
.-+.+++..-+ ..++++-.-+|.++..+.++..|+..-. .....|+.
T Consensus 790 -----------------------------~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQ 838 (1139)
T COG1197 790 -----------------------------LLIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQ 838 (1139)
T ss_pred -----------------------------HHHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecC
Confidence 11123333333 3344577778999999999999998622 22335666
Q ss_pred H-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCC
Q psy2764 361 I-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL 402 (419)
Q Consensus 361 ~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~ 402 (419)
| ..+-++++..|.+|+. +|||||-+++.|||||++|-.
T Consensus 839 M~e~eLE~vM~~F~~g~~----dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 839 MRERELEEVMLDFYNGEY----DVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred CCHHHHHHHHHHHHcCCC----CEEEEeeeeecCcCCCCCceE
Confidence 6 7788899999999999 999999999999999999975
No 96
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.3e-21 Score=196.24 Aligned_cols=119 Identities=20% Similarity=0.157 Sum_probs=92.2
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+..|+++|--.--.+..|+ |+.++||+|||+++.+++....-.+..+-|++||..||.|.++.+..++.. ++++
T Consensus 79 g~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i 156 (830)
T PRK12904 79 GMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVI 156 (830)
T ss_pred CCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3346778877665666654 899999999999988887633334667889999999999999999998875 5567
Q ss_pred eccceec-----CCCcEEEEcHHHH-HHHHhcCC------CCCCCccEEEEeCCccc
Q psy2764 147 TGDFQIN-----TTASCLVMTTEIL-RSMLYRGS------DVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 147 ~g~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~~------~~l~~~~~lIiDE~h~l 191 (419)
.|+.+.. -.++|+++||+.+ .+++..+. ..++.+.++||||||.+
T Consensus 157 ~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 157 LSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred cCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 7765433 2489999999999 77776543 24678999999999965
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=8.1e-21 Score=190.73 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~ 149 (419)
++++|...--.+.. --|+.++||+|||++|.+++....-.+..++|++||++||.|.++.+..++.. ++++.|+
T Consensus 83 ~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg 160 (896)
T PRK13104 83 HFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPD 160 (896)
T ss_pred cchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCC
Confidence 45566554434444 44789999999999988887754445678999999999999999999998775 5567776
Q ss_pred ceec-----CCCcEEEEcHHHH-HHHHhcCC-CCC-----CCccEEEEeCCccc
Q psy2764 150 FQIN-----TTASCLVMTTEIL-RSMLYRGS-DVL-----RDLEYVIFDEVHYI 191 (419)
Q Consensus 150 ~~~~-----~~~~Iiv~Tp~~l-~~~~~~~~-~~l-----~~~~~lIiDE~h~l 191 (419)
.+.. -.++|+++||+++ .+++..+. ..+ +.+.++||||||.+
T Consensus 161 ~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 161 MSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred CCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 5432 2489999999999 77776652 223 68999999999965
No 98
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.84 E-value=5.9e-20 Score=182.39 Aligned_cols=261 Identities=17% Similarity=0.187 Sum_probs=178.7
Q ss_pred cCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc----
Q psy2764 69 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---- 144 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---- 144 (419)
..+|+|+..|+-+...+..|+++-++||||.|||+..++....+..++.++++|+||..|+.|++++++++....+
T Consensus 78 ~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~ 157 (1187)
T COG1110 78 ATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDV 157 (1187)
T ss_pred hhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcce
Confidence 4456789999999999999999999999999999876666667777889999999999999999999999975433
Q ss_pred --eEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC---
Q psy2764 145 --LVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--- 208 (419)
Q Consensus 145 --~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--- 208 (419)
+++|..+. +.+.+|+|+|...|...+..-. -.+++++++|++|.++..+ ..++.++..++
T Consensus 158 ~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~e 233 (1187)
T COG1110 158 LVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSE 233 (1187)
T ss_pred eeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCH
Confidence 14454322 2258999999988765443211 1368999999999876433 22233322211
Q ss_pred -----------------------------------------CCCcEEEEeeecCChH---H-HHHHhcCcCCccEEEEec
Q psy2764 209 -----------------------------------------KEVCIVMLSATVPNTL---E-FADWVGNTKKTKVYVVST 243 (419)
Q Consensus 209 -----------------------------------------~~~~~l~~SAT~~~~~---~-~~~~l~~~~~~~~~~~~~ 243 (419)
+..+++..|||..... . +.+.++-..
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev--------- 304 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV--------- 304 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc---------
Confidence 2367889999975433 1 233333211
Q ss_pred CCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHH
Q psy2764 244 LKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLR 323 (419)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 323 (419)
......++..+.... .. .....+.++++
T Consensus 305 G~~~~~LRNIvD~y~-------------------------------------------------~~---~~~e~~~elvk 332 (1187)
T COG1110 305 GSGGEGLRNIVDIYV-------------------------------------------------ES---ESLEKVVELVK 332 (1187)
T ss_pred Cccchhhhheeeeec-------------------------------------------------cC---ccHHHHHHHHH
Confidence 111111111000000 00 11245555665
Q ss_pred HcCCCCEEEEEcc---hhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 324 KSQNLPVVLFTLS---RKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 324 ~~~~~~~LIF~~t---~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
..+.+ +|||++. ++.+++++++|+..|+++...++. ..+.++.|..|+.+.+..+---..++-||||.||.
T Consensus 333 ~lG~G-gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 333 KLGDG-GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred HhCCC-eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc----chhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 54433 9999999 999999999999999998876553 35679999999995555555566899999999974
No 99
>KOG0949|consensus
Probab=99.84 E-value=2.4e-19 Score=176.49 Aligned_cols=158 Identities=34% Similarity=0.582 Sum_probs=132.5
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHHHHHHhccc-------
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYRDFRETFQD------- 142 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~------- 142 (419)
|-|..+|.+.+...-.++.++|+|||.+|||.+..+++-.. .....-+|+++||++|++|+...+...+..
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 66899999999999999999999999999998766666533 335678999999999999999999888743
Q ss_pred --cceEeccceec-CCCcEEEEcHHHHHHHHhc---CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEE
Q psy2764 143 --VGLVTGDFQIN-TTASCLVMTTEILRSMLYR---GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVML 216 (419)
Q Consensus 143 --~~~~~g~~~~~-~~~~Iiv~Tp~~l~~~~~~---~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~ 216 (419)
.|.++.+.+.+ -+|+|+|+.|+.+.+++.. ...+.++++++|+||+|.+....-+..++.++..++ ..++++
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L~L 667 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFLVL 667 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCeeEE
Confidence 23344444444 3699999999999998877 456788999999999999988878888888888776 779999
Q ss_pred eeecCChHHHHHHhc
Q psy2764 217 SATVPNTLEFADWVG 231 (419)
Q Consensus 217 SAT~~~~~~~~~~l~ 231 (419)
|||+.|...+.+|+.
T Consensus 668 SATigN~~l~qkWln 682 (1330)
T KOG0949|consen 668 SATIGNPNLFQKWLN 682 (1330)
T ss_pred ecccCCHHHHHHHHH
Confidence 999999999999988
No 100
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=5.3e-20 Score=179.97 Aligned_cols=308 Identities=15% Similarity=0.120 Sum_probs=180.9
Q ss_pred ccHHHHHHHHHH----h-cCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccc--cc
Q psy2764 74 LDVFQKQAIIKL----E-EHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD--VG 144 (419)
Q Consensus 74 ~~~~Q~~ai~~~----~-~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~~ 144 (419)
++.+|..||..+ . ..+.+++++.||+|||..+...|..+.+ ..+|+|+++-+++|++|.+..+..+.+. ..
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~ 245 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKM 245 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccce
Confidence 699999999875 2 3357999999999999887666665544 5689999999999999999999998876 22
Q ss_pred eEeccceecCCCcEEEEcHHHHHHHHhcC-----CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeee
Q psy2764 145 LVTGDFQINTTASCLVMTTEILRSMLYRG-----SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 145 ~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~-----~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT 219 (419)
....+......+.|.++|...+....... +.....+++||+||||+ +....++.++.++..- .+++|||
T Consensus 246 n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYFdA~--~~gLTAT 319 (875)
T COG4096 246 NKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYFDAA--TQGLTAT 319 (875)
T ss_pred eeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHHHHHHH--HHhhccC
Confidence 23333344446899999999988766554 23445689999999997 4444556777666532 2455999
Q ss_pred cCChHH--HHHHhcCcCCccEEEEec-------CCCCc-cceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHH
Q psy2764 220 VPNTLE--FADWVGNTKKTKVYVVST-------LKRPV-PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCR 289 (419)
Q Consensus 220 ~~~~~~--~~~~l~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (419)
+....+ ...++.. ..++.++. ...|. .+...........+.... .........
T Consensus 320 P~~~~d~~T~~~F~g---~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~--------------serek~~g~ 382 (875)
T COG4096 320 PKETIDRSTYGFFNG---EPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAG--------------SEREKLQGE 382 (875)
T ss_pred cccccccccccccCC---CcceeecHHHHhhccccCCCCceEEeeeccccCcCcCcc--------------chhhhhhcc
Confidence 977654 3344432 22222221 00111 111111110000000000 000000000
Q ss_pred hhhhcCCCCCC-CCCCC-CCCCcchhHHHHHHHHHHH--cC--CCCEEEEEcchhhHHHHHHHhhcCCCCC----hh-HH
Q psy2764 290 KQLEKGGSGGG-KLNGP-FTRGAEKNLFISFLNYLRK--SQ--NLPVVLFTLSRKRCDQNAANLLSMDFST----AT-EK 358 (419)
Q Consensus 290 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~l~~--~~--~~~~LIF~~t~~~~~~l~~~L~~~~~~~----~~-~~ 358 (419)
....+...... ..... --+...+.+...+.+.+.. .+ .+|+||||.+..+|+.+...|.+....- .. ..
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00000000000 00111 1122334455556666655 33 4789999999999999999998752111 11 11
Q ss_pred HHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHH
Q psy2764 359 SKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKE 407 (419)
Q Consensus 359 ~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~ 407 (419)
++ .++-+..++.|.. .+..++|.++.+++..|||+|.+-.....|.
T Consensus 463 ~d-~~~~q~~Id~f~~--ke~~P~IaitvdlL~TGiDvpev~nlVF~r~ 508 (875)
T COG4096 463 GD-AEQAQALIDNFID--KEKYPRIAITVDLLTTGVDVPEVVNLVFDRK 508 (875)
T ss_pred cc-chhhHHHHHHHHh--cCCCCceEEehhhhhcCCCchheeeeeehhh
Confidence 11 2233455667764 3345699999999999999999887655443
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.83 E-value=1.8e-19 Score=185.76 Aligned_cols=338 Identities=14% Similarity=0.080 Sum_probs=190.4
Q ss_pred CccHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEe
Q psy2764 73 ELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVT 147 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~ 147 (419)
.|.|||..+...+. ....+++.-.+|.|||.-+.+.+..+. ....++|||||. .|+.||...+.+.+. ...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 47999999987764 345899999999999988766655443 334689999998 899999999977654 344443
Q ss_pred ccc---------eecCCCcEEEEcHHHHHHHHh-cCCCCCCCccEEEEeCCcccCCC--cchHHHHHHHHhcCCCCcEEE
Q psy2764 148 GDF---------QINTTASCLVMTTEILRSMLY-RGSDVLRDLEYVIFDEVHYINDS--ERGHVWEEVLILLPKEVCIVM 215 (419)
Q Consensus 148 g~~---------~~~~~~~Iiv~Tp~~l~~~~~-~~~~~l~~~~~lIiDE~h~l~~~--~~~~~~~~i~~~~~~~~~~l~ 215 (419)
++. ..-...+++|++.+.+...-. .....-..++++|+||||++-.. .....+..+.........+++
T Consensus 231 ~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LL 310 (956)
T PRK04914 231 EERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLL 310 (956)
T ss_pred CcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEE
Confidence 321 112346899999998764111 11112246899999999998521 111223333222234567899
Q ss_pred EeeecCCh--HHHHHHhcCcCCccEEEEecC------CCC-----------cc--------ceEEEE------------e
Q psy2764 216 LSATVPNT--LEFADWVGNTKKTKVYVVSTL------KRP-----------VP--------LKHFLY------------V 256 (419)
Q Consensus 216 ~SAT~~~~--~~~~~~l~~~~~~~~~~~~~~------~~~-----------~~--------~~~~~~------------~ 256 (419)
+||||-.. .++...+....+.....+... +.+ .+ +...+- .
T Consensus 311 LTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~ 390 (956)
T PRK04914 311 LTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANS 390 (956)
T ss_pred EEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcc
Confidence 99998631 222111111111111000000 000 00 000000 0
Q ss_pred -C-Cc-------------ccccceeeecccc---Ccc-----------cchhhhHHHHH-HHHhhh--hcCCCC-C-CCC
Q psy2764 257 -G-PV-------------LEKNQLFLIREAE---GEF-----------LTRGYLAAKEV-KCRKQL--EKGGSG-G-GKL 302 (419)
Q Consensus 257 -~-~~-------------~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~-~~~~~~--~~~~~~-~-~~~ 302 (419)
. .. .......+..+.. ..| ...+|...+.. ...... .+.... . ...
T Consensus 391 ~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~~~ 470 (956)
T PRK04914 391 DSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQEFED 470 (956)
T ss_pred cccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHHhh
Confidence 0 00 0000000000000 000 01222222211 000000 000000 0 000
Q ss_pred CCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh-cCCCCChhHHHHH-HHHHHHHHHhcCCcC--CC
Q psy2764 303 NGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL-SMDFSTATEKSKI-HRFFQDSIRNLQNED--DR 378 (419)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~-~~~~~~~~~~~~~-~~~r~~~l~~f~~g~--~~ 378 (419)
...| .....+.+.|.+++......|+||||+++..+..+++.|+ ..|+.+...++.+ ..+|.+++++|++++ .
T Consensus 471 ~~~~--~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~- 547 (956)
T PRK04914 471 NATW--WNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGA- 547 (956)
T ss_pred hhhc--cccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCc-
Confidence 0111 1223567788888888778899999999999999999994 6688887766555 889999999999754 5
Q ss_pred CchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 379 ALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 379 ~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
+|||||+++++|+|++.++ +|-.--.+++.-.+.|+
T Consensus 548 ---~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R 589 (956)
T PRK04914 548 ---QVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR 589 (956)
T ss_pred ---cEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc
Confidence 8999999999999998664 56555566666555554
No 102
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=4.2e-19 Score=154.51 Aligned_cols=155 Identities=31% Similarity=0.388 Sum_probs=125.6
Q ss_pred CCccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEcccHHHHHHHHHHHHHhccc-----c
Q psy2764 72 FELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSNQKYRDFRETFQD-----V 143 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~Pt~~L~~q~~~~~~~~~~~-----~ 143 (419)
++++++|.++++.+... +++++.+|||+|||.++..++...... ..++++++|+++++.|+...+.+.+.. .
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVV 86 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEE
Confidence 34799999999999888 999999999999999777766655444 378999999999999999999988753 2
Q ss_pred ceEeccce------ecCCC-cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEE
Q psy2764 144 GLVTGDFQ------INTTA-SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVML 216 (419)
Q Consensus 144 ~~~~g~~~------~~~~~-~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~ 216 (419)
....+... ..... +++++|++.+.............++++|+||+|.+....+...+..++..+.+..+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (201)
T smart00487 87 GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLL 166 (201)
T ss_pred EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEE
Confidence 22333221 22334 999999999998887776667789999999999987656777888888888778999999
Q ss_pred eeecCChHHH
Q psy2764 217 SATVPNTLEF 226 (419)
Q Consensus 217 SAT~~~~~~~ 226 (419)
|||+++..+.
T Consensus 167 saT~~~~~~~ 176 (201)
T smart00487 167 SATPPEEIEN 176 (201)
T ss_pred ecCCchhHHH
Confidence 9999876653
No 103
>KOG0951|consensus
Probab=99.81 E-value=2.8e-19 Score=179.93 Aligned_cols=274 Identities=24% Similarity=0.448 Sum_probs=205.1
Q ss_pred ccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc-----cceEe
Q psy2764 74 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLVT 147 (419)
Q Consensus 74 ~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~ 147 (419)
.+|+|.++++.+ .++.++++.+|+|||||.|+.++++. .....++++++|..+.+..++..|.+.+.. +..++
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 589999999987 78899999999999999998888766 455688999999999999999999887765 33356
Q ss_pred ccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHH------HHHHHHhcCCCCcEEEEe
Q psy2764 148 GDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHV------WEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 148 g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~------~~~i~~~~~~~~~~l~~S 217 (419)
|..+.+ ...+|+|+||+++..+ + ..+.+++.|.||.|++.+ .+++. ++.+..++.+.++++++|
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l--q---~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls 1296 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL--Q---SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALS 1296 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH--h---hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEee
Confidence 655443 4589999999999866 1 678899999999999874 34432 556667778899999999
Q ss_pred eecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCC
Q psy2764 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGS 297 (419)
Q Consensus 218 AT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (419)
..+.|..++ ++. ....++++.+..||+|+...+..........
T Consensus 1297 ~~lana~d~---ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~--------------------------------- 1339 (1674)
T KOG0951|consen 1297 SSLANARDL---IGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFES--------------------------------- 1339 (1674)
T ss_pred hhhccchhh---ccc-cccceeecCcccCCCceeEEEEEeccchhHH---------------------------------
Confidence 999998887 444 5678899999999999988765544311111
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCC
Q psy2764 298 GGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDD 377 (419)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~ 377 (419)
++.++.+..+.++..+. ..+++++||++++++|..+|..|.......... .+...++. ..
T Consensus 1340 --------~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~------~l~~~~e~----~~ 1399 (1674)
T KOG0951|consen 1340 --------RMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPD------YLLSELEE----CD 1399 (1674)
T ss_pred --------HHHHhhhhHHHHHHHHh--cCCCCeEEEeccchhhhhhhhccchhhccCcHH------HHHHHHhc----ch
Confidence 11344555667777664 355679999999999999999887764433111 11111111 11
Q ss_pred CCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 378 RALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 378 ~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
--...-+.-||. |-+|+..+.+++.++|.-|.|+
T Consensus 1400 ------~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~ 1433 (1674)
T KOG0951|consen 1400 ------ETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQ 1433 (1674)
T ss_pred ------Hhhhhccccccc--ccccCcchHHHHHHHHhcCcEE
Confidence 012355777887 8899999999999999999874
No 104
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.78 E-value=2.2e-18 Score=148.26 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=100.9
Q ss_pred CCccHHHHHHHHHHh-------cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc
Q psy2764 72 FELDVFQKQAIIKLE-------EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 144 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~-------~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~ 144 (419)
|+|+++|.+|+..+. ..+++++.+|||||||.+++.++..+.. ++++++|+..|++|+.+.+..+.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 458999999999875 2689999999999999987766665555 999999999999999999977665421
Q ss_pred eEec---------c-------------ceecCCCcEEEEcHHHHHHHHhcCC-----------CCCCCccEEEEeCCccc
Q psy2764 145 LVTG---------D-------------FQINTTASCLVMTTEILRSMLYRGS-----------DVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 145 ~~~g---------~-------------~~~~~~~~Iiv~Tp~~l~~~~~~~~-----------~~l~~~~~lIiDE~h~l 191 (419)
.... . .......+++++|...+........ ......++||+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 1110 0 0112357899999999987654321 23346789999999987
Q ss_pred CCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 192 NDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
.... .++.++. .+...+|+||||+.+
T Consensus 159 ~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 159 PSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp HHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred CCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 4322 1445545 457889999999864
No 105
>KOG1123|consensus
Probab=99.78 E-value=5.2e-20 Score=169.51 Aligned_cols=276 Identities=16% Similarity=0.151 Sum_probs=195.2
Q ss_pred ccHHHHHHHHHHhcC---CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc----ccceE
Q psy2764 74 LDVFQKQAIIKLEEH---NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLV 146 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~---~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~----~~~~~ 146 (419)
++|||.+++..+..+ ++.+|+.|+|+|||++..-+ ...-.+++|+++.+-.-++||...++.+.. .++.+
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTA---a~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTA---ACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeee---eeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 799999999998644 68899999999999874433 333478899999999999999999999864 27778
Q ss_pred eccce--ecCCCcEEEEcHHHHHHHHhcC--------CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEE
Q psy2764 147 TGDFQ--INTTASCLVMTTEILRSMLYRG--------SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVML 216 (419)
Q Consensus 147 ~g~~~--~~~~~~Iiv~Tp~~l~~~~~~~--------~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~ 216 (419)
+++.. ...++.|+|+|+.++..--.+. ...-+...++++||+|.+....|+..+..+.++.. +|+
T Consensus 380 Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK-----LGL 454 (776)
T KOG1123|consen 380 TSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK-----LGL 454 (776)
T ss_pred eccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh-----ccc
Confidence 87654 3456899999998775211111 11234678999999999988778887777767666 999
Q ss_pred eeecCChHH--------------HHHHhcCcCCccEEEEecCCCCccceEEEEeCC--cccccceeeeccccCcccchhh
Q psy2764 217 SATVPNTLE--------------FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP--VLEKNQLFLIREAEGEFLTRGY 280 (419)
Q Consensus 217 SAT~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 280 (419)
|||+-++++ -++|+.......+..+.+.....|+.-.++... ......+.+++.+.+.|...+|
T Consensus 455 TATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqf 534 (776)
T KOG1123|consen 455 TATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQF 534 (776)
T ss_pred eeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHH
Confidence 999876654 356777666666665555555555433222111 2334455556656555555555
Q ss_pred hHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHH
Q psy2764 281 LAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK 360 (419)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~ 360 (419)
.. +.. ...+.++|||..++-.-.+.|-.|.+.-+ .+..
T Consensus 535 LI-------------------------------------~~H-E~RgDKiIVFsDnvfALk~YAikl~KpfI----YG~T 572 (776)
T KOG1123|consen 535 LI-------------------------------------KFH-ERRGDKIIVFSDNVFALKEYAIKLGKPFI----YGPT 572 (776)
T ss_pred HH-------------------------------------HHH-HhcCCeEEEEeccHHHHHHHHHHcCCceE----ECCC
Confidence 33 332 33567799999999888888888877422 2222
Q ss_pred HHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCC
Q psy2764 361 IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL 402 (419)
Q Consensus 361 ~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~ 402 (419)
.+.+|.++|+.|+.... .+.+..+.+....||+|.++..
T Consensus 573 sq~ERm~ILqnFq~n~~---vNTIFlSKVgDtSiDLPEAnvL 611 (776)
T KOG1123|consen 573 SQNERMKILQNFQTNPK---VNTIFLSKVGDTSIDLPEANVL 611 (776)
T ss_pred chhHHHHHHHhcccCCc---cceEEEeeccCccccCCcccEE
Confidence 36789999999994443 2667888999999999999874
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.78 E-value=7.7e-18 Score=176.19 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCCCccHHHHHHHH----HHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2764 70 WPFELDVFQKQAII----KLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~----~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
.+|++++.|.+.+. .+.+++++++.||||+|||++|++++......+.+++|.+||++|..|+..
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 34567999998766 446789999999999999999888866544467899999999999999865
No 107
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4.6e-19 Score=177.98 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=115.6
Q ss_pred hccCCCccccccc--cccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 48 EMLDVSKPVLDFD--AKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 48 ~~~~l~~~~~~~~--~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
+.|++..++.... ..+..+||..||.++|+|.++++.+..++++++.++||+|||++|++++......+..++||+||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpT 144 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVN 144 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCC
Confidence 3377777766211 11337899999999999999999999999999999999999999888877443344569999999
Q ss_pred HHHHHHHHHHHHHhccc----cceEeccceecC-----CCcEEEEcHHHH-HHHHhcCCCCCC-------CccEEEEeCC
Q psy2764 126 KALSNQKYRDFRETFQD----VGLVTGDFQINT-----TASCLVMTTEIL-RSMLYRGSDVLR-------DLEYVIFDEV 188 (419)
Q Consensus 126 ~~L~~q~~~~~~~~~~~----~~~~~g~~~~~~-----~~~Iiv~Tp~~l-~~~~~~~~~~l~-------~~~~lIiDE~ 188 (419)
++||.|..+.+..+... ++.+.|+.+... +++|+|+||+++ .+++..+...+. .+.++|||||
T Consensus 145 rELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEA 224 (970)
T PRK12899 145 DYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEV 224 (970)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEech
Confidence 99999999999988764 556777665432 589999999999 888877654444 5689999999
Q ss_pred cccC
Q psy2764 189 HYIN 192 (419)
Q Consensus 189 h~l~ 192 (419)
|.++
T Consensus 225 DsmL 228 (970)
T PRK12899 225 DSIL 228 (970)
T ss_pred hhhh
Confidence 9764
No 108
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=7.1e-18 Score=171.23 Aligned_cols=146 Identities=15% Similarity=0.154 Sum_probs=99.3
Q ss_pred ccHHHHHHHHHH----hc------CCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 74 LDVFQKQAIIKL----EE------HNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 74 ~~~~Q~~ai~~~----~~------~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
++++|..|+..+ .. .+..+++.|||||||+++++.+..+. ...+++|||+|+++|..|+.+.|.++..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 599999999875 22 36899999999999998777665443 4568999999999999999999999864
Q ss_pred ccceEeccc------eecCCCcEEEEcHHHHHHHHhcCC--CCCCCc-cEEEEeCCcccCCCcchHHHHHHHHhcCCCCc
Q psy2764 142 DVGLVTGDF------QINTTASCLVMTTEILRSMLYRGS--DVLRDL-EYVIFDEVHYINDSERGHVWEEVLILLPKEVC 212 (419)
Q Consensus 142 ~~~~~~g~~------~~~~~~~Iiv~Tp~~l~~~~~~~~--~~l~~~-~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~ 212 (419)
......+.. -......|+|+|.+++...+.... .....- .+||+||||+... +.....+...++ +..
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~~~~~~l~~~~p-~a~ 394 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---GELAKNLKKALK-NAS 394 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---hHHHHHHHhhCC-CCc
Confidence 311111110 012247899999999976433211 111111 2899999998643 222222334454 578
Q ss_pred EEEEeeecCCh
Q psy2764 213 IVMLSATVPNT 223 (419)
Q Consensus 213 ~l~~SAT~~~~ 223 (419)
++||||||-..
T Consensus 395 ~lGfTaTP~~~ 405 (667)
T TIGR00348 395 FFGFTGTPIFK 405 (667)
T ss_pred EEEEeCCCccc
Confidence 99999999643
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=3.1e-17 Score=165.93 Aligned_cols=267 Identities=14% Similarity=0.187 Sum_probs=182.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEEEEcccHHHHHHHHHHHHHhccc-cceEec--
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLVTG-- 148 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~g-- 148 (419)
+....+.+..+..+..++++||||||||+. ++...+. ..+.++.+.-|.|--|..+++++.+..+. +|-..|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 677778888889999999999999999976 4432222 34678999999999999999999876654 444333
Q ss_pred ---cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc-cCCCc-chHHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 149 ---DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY-INDSE-RGHVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 149 ---~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~-l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
+........|-++|.+.|...+.... .+..+++||+||+|. -++.. --..+..++...+++.++|.||||+ +.
T Consensus 130 iRfe~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl-d~ 207 (845)
T COG1643 130 IRFESKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL-DA 207 (845)
T ss_pred EEeeccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc-CH
Confidence 34455678899999999999997765 489999999999993 11111 1122334444555679999999999 77
Q ss_pred HHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCC
Q psy2764 224 LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLN 303 (419)
Q Consensus 224 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (419)
.++.++++. .-++....+-.|++..+......... .
T Consensus 208 ~rfs~~f~~-----apvi~i~GR~fPVei~Y~~~~~~d~~----------------l----------------------- 243 (845)
T COG1643 208 ERFSAYFGN-----APVIEIEGRTYPVEIRYLPEAEADYI----------------L----------------------- 243 (845)
T ss_pred HHHHHHcCC-----CCEEEecCCccceEEEecCCCCcchh----------------H-----------------------
Confidence 778888886 12344566777776665322220000 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCC----CCChhHHHHH-HHHHHHHHHhcCCcCCC
Q psy2764 304 GPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMD----FSTATEKSKI-HRFFQDSIRNLQNEDDR 378 (419)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~----~~~~~~~~~~-~~~r~~~l~~f~~g~~~ 378 (419)
... +...+........+-+|||.+..++.+.+++.|.+.. +.....++.+ .++..++++---.|.-
T Consensus 244 -------~~a-i~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~R- 314 (845)
T COG1643 244 -------LDA-IVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKR- 314 (845)
T ss_pred -------HHH-HHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcc-
Confidence 011 1122222233445669999999999999999998722 2222344444 5556666666554443
Q ss_pred CchhhHHHHHHHhhhhhhccCCC
Q psy2764 379 ALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 379 ~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
+|+++|++++.+|-||.+..
T Consensus 315 ---KVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 315 ---KVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred ---eEEEEccccccceeeCCeEE
Confidence 69999999999999986653
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=5.3e-17 Score=161.83 Aligned_cols=142 Identities=22% Similarity=0.219 Sum_probs=112.3
Q ss_pred CccHHHHHHHHHHhcC----CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc-cceEe
Q psy2764 73 ELDVFQKQAIIKLEEH----NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLVT 147 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~----~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~ 147 (419)
.+++-|+.|...+.+. ...++.+.||||||.+|+-+|...+..|+++|+++|-.+|..|+.++|+..|+. +++++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 4799999999998544 789999999999999999999999999999999999999999999999998875 88888
Q ss_pred ccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccC---CCcchHHHHHHHHh--cCCCC
Q psy2764 148 GDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIN---DSERGHVWEEVLIL--LPKEV 211 (419)
Q Consensus 148 g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~---~~~~~~~~~~i~~~--~~~~~ 211 (419)
++.+.. .+..|+|+|-..+. ..++++++|||||-|.-. +.+.+...+.+.-. -..+.
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 876532 35899999976553 368899999999999431 11222222322221 22479
Q ss_pred cEEEEeeecC
Q psy2764 212 CIVMLSATVP 221 (419)
Q Consensus 212 ~~l~~SAT~~ 221 (419)
++++-|||++
T Consensus 351 pvvLgSATPS 360 (730)
T COG1198 351 PVVLGSATPS 360 (730)
T ss_pred CEEEecCCCC
Confidence 9999999986
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.73 E-value=2.4e-17 Score=169.05 Aligned_cols=290 Identities=18% Similarity=0.196 Sum_probs=172.5
Q ss_pred ccHHHHHHHHHHh---cCC-cEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhcccc--
Q psy2764 74 LDVFQKQAIIKLE---EHN-HVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDV-- 143 (419)
Q Consensus 74 ~~~~Q~~ai~~~~---~~~-~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~-- 143 (419)
..+.|..++..+. ... .+++.||||+|||++++.+...... ...+++++.|+++++++++++++..++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 4889999998873 334 8999999999999987766553332 47999999999999999999999876652
Q ss_pred -ce-Eeccceec---------------------CCCcEEEEcHHHHHHHHhcCCCCC----CCccEEEEeCCcccCCCcc
Q psy2764 144 -GL-VTGDFQIN---------------------TTASCLVMTTEILRSMLYRGSDVL----RDLEYVIFDEVHYINDSER 196 (419)
Q Consensus 144 -~~-~~g~~~~~---------------------~~~~Iiv~Tp~~l~~~~~~~~~~l----~~~~~lIiDE~h~l~~~~~ 196 (419)
+. .+|..... ....++++||.............. =..+++|+||+|.+.+...
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 22 23322100 013455566655543222211111 1235899999999977633
Q ss_pred hHHHHHHHHhcC-CCCcEEEEeeecCChHH--HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccC
Q psy2764 197 GHVWEEVLILLP-KEVCIVMLSATVPNTLE--FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEG 273 (419)
Q Consensus 197 ~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (419)
...+..++..+. -+..+++||||+|.... +.+.+.... .+..... ..+.... ............+.
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~----~~~~~~~-~~~~~~e----~~~~~~~~~~~~~~-- 424 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGR----EVVENAK-FCPKEDE----PGLKRKERVDVEDG-- 424 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhccc----ceecccc-ccccccc----cccccccchhhhhh--
Confidence 333444444433 47899999999998764 333333210 0000000 0000000 00000000000000
Q ss_pred cccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCC
Q psy2764 274 EFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFS 353 (419)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~ 353 (419)
.+ ........ .....+++++|-|||+..|.++++.|+..+..
T Consensus 425 ----~~--------------------------------~~~~~~~~--~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~ 466 (733)
T COG1203 425 ----PQ--------------------------------EELIELIS--EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPK 466 (733)
T ss_pred ----hh--------------------------------Hhhhhcch--hhhccCCcEEEEEecHHHHHHHHHHHHhcCCC
Confidence 00 00000111 12355678999999999999999999998873
Q ss_pred ChhHHHHH-HHHHHHHHHhcC----CcCCCCchhhHHHHHHHhhhhhhccCCC---ChhhHHHHHHHHhcC
Q psy2764 354 TATEKSKI-HRFFQDSIRNLQ----NEDDRALPQVKRLEQLLKNGIGVHHSGI---LPILKEIVEMLFQKG 416 (419)
Q Consensus 354 ~~~~~~~~-~~~r~~~l~~f~----~g~~~~~~~vlv~t~~l~~GIDi~~~~l---~~~~r~~ie~~f~~g 416 (419)
....|+.. ...|.+.+++++ .+.. .|+|+|++++.|+|+..--| +.....+|+++.|.+
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~----~IvVaTQVIEagvDidfd~mITe~aPidSLIQR~GRv~ 533 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEG----FIVVATQVIEAGVDIDFDVLITELAPIDSLIQRAGRVN 533 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCC----eEEEEeeEEEEEeccccCeeeecCCCHHHHHHHHHHHh
Confidence 33444444 666776666433 2334 78999999999999986555 355678888877654
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.7e-17 Score=166.62 Aligned_cols=117 Identities=21% Similarity=0.146 Sum_probs=87.4
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~ 149 (419)
++++|.-.--.+. +.-|+.++||.|||+++.+++......+..|.||+|+..||.|..+.+..++.. ++++.++
T Consensus 83 ~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~ 160 (908)
T PRK13107 83 HFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAG 160 (908)
T ss_pred cCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCC
Confidence 4566654433333 445889999999999988887765566777999999999999999999988776 4445555
Q ss_pred ceec-----CCCcEEEEcHHHH-HHHHhcC-CC-----CCCCccEEEEeCCcccC
Q psy2764 150 FQIN-----TTASCLVMTTEIL-RSMLYRG-SD-----VLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 150 ~~~~-----~~~~Iiv~Tp~~l-~~~~~~~-~~-----~l~~~~~lIiDE~h~l~ 192 (419)
.+.. -.++|+++||+.+ ++++..+ .. ..+.+.++||||+|.++
T Consensus 161 ~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 161 LGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 4322 1589999999998 6666554 22 23778999999999664
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=4e-17 Score=163.55 Aligned_cols=120 Identities=24% Similarity=0.199 Sum_probs=90.6
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cce
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGL 145 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~ 145 (419)
.+..|++.|.-.--.+..|+ |+.+.||+|||+++.+++......|..+-+++||.-||.|-++.+..++.. +++
T Consensus 77 ~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 77 LGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred hCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 34446888887766666665 899999999999999988888888999999999999999999999998776 455
Q ss_pred Eeccceec-----CCCcEEEEcHHHHH-HHHhc------CCCCCCCccEEEEeCCccc
Q psy2764 146 VTGDFQIN-----TTASCLVMTTEILR-SMLYR------GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 146 ~~g~~~~~-----~~~~Iiv~Tp~~l~-~~~~~------~~~~l~~~~~lIiDE~h~l 191 (419)
+.|+.+.. -.++|+++|...+- +++.. .....+.+.+.||||+|.+
T Consensus 155 i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 155 NLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred eCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 55554332 25899999986543 22221 1123457889999999965
No 114
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=1.7e-16 Score=129.96 Aligned_cols=132 Identities=29% Similarity=0.373 Sum_probs=100.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcc---ccceEecccee-------cCCC
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLVTGDFQI-------NTTA 156 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~---~~~~~~g~~~~-------~~~~ 156 (419)
+++++.+|||+|||.++...+..... ...+++|++|++.++.|+.+.+..... .+..+.+.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 47899999999999887777665543 568999999999999999999998874 34455554322 3568
Q ss_pred cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 157 SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 157 ~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
+|+++|++.+..............+++|+||+|.+....................+++++|||+
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 9999999999887766655566889999999999876554443222334445688999999996
No 115
>KOG0922|consensus
Probab=99.69 E-value=9.8e-16 Score=147.01 Aligned_cols=260 Identities=13% Similarity=0.208 Sum_probs=173.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCCeEEEEcccHHHHHHHHHHHHHhccc-cceEec--
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLVTG-- 148 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~g-- 148 (419)
..+-.+.+..+.+++.++++|+||||||+- .+-... -....++.+..|.|--|..++++...-.+. +|-..|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc--HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 566667788888999999999999999964 332221 123344999999999999999988765443 443333
Q ss_pred ---cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc--cCCCcchHHHHHHHHhc---CCCCcEEEEeeec
Q psy2764 149 ---DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY--INDSERGHVWEEVLILL---PKEVCIVMLSATV 220 (419)
Q Consensus 149 ---~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~--l~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~ 220 (419)
+........|.+.|.+.|++-+...+ .+.++++||+||||. +. -..+-.++..+ +++.+++.+|||+
T Consensus 131 IRFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~----TDiLlGlLKki~~~R~~LklIimSATl 205 (674)
T KOG0922|consen 131 IRFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLH----TDILLGLLKKILKKRPDLKLIIMSATL 205 (674)
T ss_pred EEecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhH----HHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 12223467899999999998776655 488999999999992 21 11222222222 2468999999999
Q ss_pred CChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCC
Q psy2764 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGG 300 (419)
Q Consensus 221 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (419)
+...+.+|++. +.++.-..+-.|++.++...+. .+|.
T Consensus 206 -da~kfS~yF~~-----a~i~~i~GR~fPVei~y~~~p~------------------~dYv------------------- 242 (674)
T KOG0922|consen 206 -DAEKFSEYFNN-----APILTIPGRTFPVEILYLKEPT------------------ADYV------------------- 242 (674)
T ss_pred -cHHHHHHHhcC-----CceEeecCCCCceeEEeccCCc------------------hhhH-------------------
Confidence 67778888887 2334456677777776544222 1111
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCC--------hhHHHHH-HHHHHHHHHh
Q psy2764 301 KLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFST--------ATEKSKI-HRFFQDSIRN 371 (419)
Q Consensus 301 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~--------~~~~~~~-~~~r~~~l~~ 371 (419)
.+.+..+.++....+.+-+|||-...++.+.+++.|.+..-.. ...++.+ .++..++.+.
T Consensus 243 -----------~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p 311 (674)
T KOG0922|consen 243 -----------DAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDP 311 (674)
T ss_pred -----------HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccC
Confidence 1223445555555666779999999999999999987751111 1123333 4555555554
Q ss_pred cCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 372 LQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 372 f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
--.|.- +|+++|++++..|-|+-+
T Consensus 312 ~p~g~R----KvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 312 APPGKR----KVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCCCcc----eEEEEcceeeeeEEecce
Confidence 444444 999999999999887643
No 116
>KOG0952|consensus
Probab=99.68 E-value=5.6e-18 Score=168.51 Aligned_cols=279 Identities=25% Similarity=0.365 Sum_probs=194.8
Q ss_pred ccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 74 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 74 ~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+.|.|.+.+..+ ..+.++++.+|||+|||.+|..++.... .++.++++|+|.++|+....+.+.+.... +.-+
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 466777777654 5678999999999999999988877554 46789999999999999999999876543 3335
Q ss_pred eccceec----CCCcEEEEcHHHHHHHHh--cCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh-------cCCCCcE
Q psy2764 147 TGDFQIN----TTASCLVMTTEILRSMLY--RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL-------LPKEVCI 213 (419)
Q Consensus 147 ~g~~~~~----~~~~Iiv~Tp~~l~~~~~--~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~-------~~~~~~~ 213 (419)
+|+...+ ..++++|+||+++..... .....++++..+|+||.|++.+ ++++.++.+... ..+.+|.
T Consensus 1008 tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~ 1086 (1230)
T KOG0952|consen 1008 TGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRY 1086 (1230)
T ss_pred cCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhh
Confidence 5554433 358999999999987665 4567889999999999998865 677776655433 2356888
Q ss_pred EEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhh
Q psy2764 214 VMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLE 293 (419)
Q Consensus 214 l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (419)
+++|--+.+..++++|++.... +.+.+..+|+|++.++...+. ..|
T Consensus 1087 ~glsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~------------------~~~------------- 1132 (1230)
T KOG0952|consen 1087 LGLSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG------------------QHY------------- 1132 (1230)
T ss_pred hhHhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc------------------hhc-------------
Confidence 9999889999999999998654 677788899999887655444 011
Q ss_pred cCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCC---CChh-HHHHHHHHHHHHH
Q psy2764 294 KGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDF---STAT-EKSKIHRFFQDSI 369 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~---~~~~-~~~~~~~~r~~~l 369 (419)
.++..++.+....++ -...+..++|||+.++++....+..|...-. +... .+.. ..+.+-++
T Consensus 1133 ----------cprm~smnkpa~qai---k~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d-e~e~e~~~ 1198 (1230)
T KOG0952|consen 1133 ----------CPRMMSMNKPAFQAI---KTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD-ELELEIIM 1198 (1230)
T ss_pred ----------chhhhhcccHHHHHH---hcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC-HHHHHHHH
Confidence 111223333333332 2345668999999999887766666544311 1110 1111 22344455
Q ss_pred HhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHHHHH
Q psy2764 370 RNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVE 410 (419)
Q Consensus 370 ~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie 410 (419)
.+-++.+ .--.+.-||..||++|...+|..+|
T Consensus 1199 ~~~~d~~---------Lk~tl~Fgi~lhhagl~~~dr~~~~ 1230 (1230)
T KOG0952|consen 1199 SKVRDTN---------LKLTLPFGIGLHHAGLIENDRKIVE 1230 (1230)
T ss_pred HHhcccc---------hhhhhhhhhhhhhhhccccccccCC
Confidence 5555222 2345889999999999999887653
No 117
>KOG0920|consensus
Probab=99.64 E-value=3.3e-14 Score=143.68 Aligned_cols=296 Identities=16% Similarity=0.138 Sum_probs=183.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHH---HhcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEec--
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL---SQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTG-- 148 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~---~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g-- 148 (419)
+..+.+.+..+.+++.+++++.||||||+-..-.|+. ......++++..|+|--|..+++++.+--. ..|...|
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYq 254 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQ 254 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEE
Confidence 7788899999999999999999999999752222321 123567899999999999999999976543 2332222
Q ss_pred ---cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc--cCCCcchHHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 149 ---DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY--INDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 149 ---~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~--l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
.........+++||.+.|++.+.. ...+..+.++|+||+|. +........+..++. ..++.++++||||+. .
T Consensus 255 vrl~~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~-~~p~LkvILMSAT~d-a 331 (924)
T KOG0920|consen 255 VRLESKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP-RNPDLKVILMSATLD-A 331 (924)
T ss_pred EeeecccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhh-hCCCceEEEeeeecc-h
Confidence 223334588999999999988866 45688999999999993 222222233333333 346899999999994 6
Q ss_pred HHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCC
Q psy2764 224 LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLN 303 (419)
Q Consensus 224 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (419)
..+..+++.- . +..-..+..|+..++...-- ......... ..++ ...... .......
T Consensus 332 e~fs~YF~~~---p--vi~i~grtfpV~~~fLEDil----~~~~~~~~~----~~~~-----~~~~~~-----~~~~~~~ 388 (924)
T KOG0920|consen 332 ELFSDYFGGC---P--VITIPGRTFPVKEYFLEDIL----SKTGYVSED----DSAR-----SGPERS-----QLRLARL 388 (924)
T ss_pred HHHHHHhCCC---c--eEeecCCCcchHHHHHHHHH----HHhcccccc----cccc-----cccccC-----ccccccc
Confidence 6678888752 1 22223333333322210000 000000000 0000 000000 0000001
Q ss_pred CCCCCCcchhHHHHHHHHHHHc-CCCCEEEEEcchhhHHHHHHHhhcCCCCC-------hhHHHHH-HHHHHHHHHhcCC
Q psy2764 304 GPFTRGAEKNLFISFLNYLRKS-QNLPVVLFTLSRKRCDQNAANLLSMDFST-------ATEKSKI-HRFFQDSIRNLQN 374 (419)
Q Consensus 304 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~LIF~~t~~~~~~l~~~L~~~~~~~-------~~~~~~~-~~~r~~~l~~f~~ 374 (419)
..+....+-+.+..+++++... ..+.+|||-+.......+...|....... ...|+.+ ..+.+.+...--.
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~ 468 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK 468 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC
Confidence 1122334555666777766444 35789999999999999999997532221 2245555 5566677766665
Q ss_pred cCCCCchhhHHHHHHHhhhhhhccCC
Q psy2764 375 EDDRALPQVKRLEQLLKNGIGVHHSG 400 (419)
Q Consensus 375 g~~~~~~~vlv~t~~l~~GIDi~~~~ 400 (419)
|.- +|+++|++++..|-|+++-
T Consensus 469 g~R----KIIlaTNIAETSITIdDVv 490 (924)
T KOG0920|consen 469 GTR----KIILATNIAETSITIDDVV 490 (924)
T ss_pred Ccc----hhhhhhhhHhhcccccCeE
Confidence 555 9999999999999998765
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.64 E-value=6.2e-15 Score=137.71 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=74.7
Q ss_pred cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC--
Q psy2764 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI-- 401 (419)
Q Consensus 325 ~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l-- 401 (419)
..+.++||-+-|++.|+.+.++|...|+.+...|+++ .-+|.+++..+|.|.. +|||..++|.+|+|+|.|+|
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~----DvLVGINLLREGLDiPEVsLVA 519 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF----DVLVGINLLREGLDLPEVSLVA 519 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCc----cEEEeehhhhccCCCcceeEEE
Confidence 4446799999999999999999999999999988887 6789999999999999 99999999999999999887
Q ss_pred ---------ChhhHHHHHHHH
Q psy2764 402 ---------LPILKEIVEMLF 413 (419)
Q Consensus 402 ---------~~~~r~~ie~~f 413 (419)
+..+|.+|+--.
T Consensus 520 IlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 520 ILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred EeecCccccccccchHHHHHH
Confidence 466677666443
No 119
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.64 E-value=1.9e-14 Score=148.86 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCCccHHHHHHHHH----HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH-HHHHH
Q psy2764 70 WPFELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY-RDFRE 138 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~----~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~-~~~~~ 138 (419)
.+|++++-|.+.... +.+++.+++.|+||+|||++|++++.... .+.+++|++||++|++|+. +.+..
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 347789999995544 36788999999999999999887755432 4689999999999999995 43433
No 120
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.57 E-value=2e-14 Score=113.56 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=83.3
Q ss_pred cCCcEEEEcCCCCChhHH-HHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVI-AEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~-~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
+|+--++...+|+|||.- ..-.+....+++.++|++.|||.++.++.+.++.....+..-.-......+.-|-++|...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at 82 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT 82 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH
Confidence 466778999999999973 2223445677899999999999999999999976532211100011233456788999998
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC--CCCcEEEEeeecCChH
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--KEVCIVMLSATVPNTL 224 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~ 224 (419)
+..++.+ ...+.+++++|+||||...... ......+.... ....+|++|||+|...
T Consensus 83 ~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 83 YGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred HHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 8887766 5567899999999999754322 22222332222 2468999999998665
No 121
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=4.1e-13 Score=141.47 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHH
Q psy2764 71 PFELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
+|++++-|.+....+ .+++.+++.||||+|||++|+++... ....+.+++|-++|+.|.+|+..
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHH
Confidence 467899999966544 57889999999999999998888654 44578999999999999999876
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=3.6e-13 Score=135.63 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=78.0
Q ss_pred cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC--
Q psy2764 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI-- 401 (419)
Q Consensus 325 ~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l-- 401 (419)
..+.++||||+|++.++.+++.|...|+.+...|+.+ ..+|.++++.|++|.. .++|||+++++|+|+|++++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i----~VLV~t~~L~rGfDiP~v~lVv 515 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF----DVLVGINLLREGLDLPEVSLVA 515 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc----eEEEEcChhcCCeeeCCCcEEE
Confidence 4556799999999999999999999999887766655 7889999999999999 99999999999999999984
Q ss_pred ---------ChhhHHHHHHHHhcCc
Q psy2764 402 ---------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 ---------~~~~r~~ie~~f~~g~ 417 (419)
+...+.+|+...|.|+
T Consensus 516 i~DadifG~p~~~~~~iqriGRagR 540 (655)
T TIGR00631 516 ILDADKEGFLRSERSLIQTIGRAAR 540 (655)
T ss_pred EeCcccccCCCCHHHHHHHhcCCCC
Confidence 5567789988887775
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.53 E-value=6.2e-13 Score=138.37 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=183.4
Q ss_pred CccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEEEEcccHHHHHHHHHHHHHhccc--c
Q psy2764 73 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKALSNQKYRDFRETFQD--V 143 (419)
Q Consensus 73 ~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~ 143 (419)
+|++||.+++.-+ ..|.+.|+.-..|.|||+.++..+..+. .....+|||||. ++..||.+.+.++++. +
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 5899999999765 3678899999999999987655544332 234578999997 7789999999999875 3
Q ss_pred ceEeccce----------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcE
Q psy2764 144 GLVTGDFQ----------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCI 213 (419)
Q Consensus 144 ~~~~g~~~----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 213 (419)
..++|... ...+.+|+|+|++.+...... ..--..++||+||||++-.. .......+..+.. ...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~~R 322 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-NYR 322 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-CcE
Confidence 44566432 123578999999988643221 11124689999999998642 2334445555543 455
Q ss_pred EEEeeecC-Ch-HHHHHHhcCcCCccEEE---E------e-------------cCCCCccceEEE--EeCCcccccceee
Q psy2764 214 VMLSATVP-NT-LEFADWVGNTKKTKVYV---V------S-------------TLKRPVPLKHFL--YVGPVLEKNQLFL 267 (419)
Q Consensus 214 l~~SAT~~-~~-~~~~~~l~~~~~~~~~~---~------~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~ 267 (419)
+++|+||- |. .++...+.-..+..... + . ...+|.-++... +...-..+.....
T Consensus 323 LLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv 402 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETIL 402 (1033)
T ss_pred EEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEE
Confidence 88999974 22 23322222111100000 0 0 000000000000 0000000000000
Q ss_pred eccccCcccchhhhHHHHHH--------------------HHhhhhcCCCCCCCCCCCCC-----CCcchhHHHHHHHHH
Q psy2764 268 IREAEGEFLTRGYLAAKEVK--------------------CRKQLEKGGSGGGKLNGPFT-----RGAEKNLFISFLNYL 322 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l 322 (419)
.+.- .. ....++..+... .++.............++-. ......+...+..++
T Consensus 403 ~v~L-S~-~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 403 KVGM-SQ-MQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred eeCC-CH-HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 0000 00 001111111100 00000000000000000000 001122333334443
Q ss_pred H--HcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 323 R--KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 323 ~--~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
. ...+.++|||+........+.+.|...|+.....++.+ ...|++++++|.+.... ..-+|++|.+.+.||++..+
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~-~~VfLLSTrAGGlGINLt~A 559 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSE-KFVFLLSTRAGGLGINLATA 559 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCC-ceEEEEeccccccCCchhhC
Confidence 2 23457899999999999999999988888766655545 78999999999754331 11468899999999999887
Q ss_pred CC---------ChhhHHHHHHHHhcCc
Q psy2764 400 GI---------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 400 ~l---------~~~~r~~ie~~f~~g~ 417 (419)
+. |..+.+-+-+..+-|.
T Consensus 560 d~VIiyD~dWNP~~d~QAidRaHRIGQ 586 (1033)
T PLN03142 560 DIVILYDSDWNPQVDLQAQDRAHRIGQ 586 (1033)
T ss_pred CEEEEeCCCCChHHHHHHHHHhhhcCC
Confidence 75 4556666666666653
No 124
>KOG0923|consensus
Probab=99.52 E-value=1e-13 Score=132.43 Aligned_cols=276 Identities=13% Similarity=0.169 Sum_probs=176.1
Q ss_pred cccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH----hcCCCeEEEEcccHHHHHHHHHHH
Q psy2764 61 AKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS----QNHKTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 61 ~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~----~~~~~~~lii~Pt~~L~~q~~~~~ 136 (419)
..+.+..-..| .+++-.+.+.++..++.++|.|.||||||+- ++-... .+.+.++-+..|.|--|..++.++
T Consensus 255 ~~iee~RksLP--Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 255 ESIEEVRKSLP--VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred HHHHHHHhcCC--chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhcccccCCceEeecCcchHHHHHHHHHH
Confidence 34444445555 4777788888899999999999999999964 333222 235666999999999999999888
Q ss_pred HHhc-cccceEeccc-----eecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc-cCCCc-chHHHHHHHHhcC
Q psy2764 137 RETF-QDVGLVTGDF-----QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY-INDSE-RGHVWEEVLILLP 208 (419)
Q Consensus 137 ~~~~-~~~~~~~g~~-----~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~-l~~~~-~~~~~~~i~~~~~ 208 (419)
.+-. ...|.-.|-. ......-|=++|.++|+.-+.... .|..++++||||||. -+... .-..+..| ...+
T Consensus 331 A~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDI-ar~R 408 (902)
T KOG0923|consen 331 AEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFR 408 (902)
T ss_pred HHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhC
Confidence 7643 3343333311 112345567999999998775544 578899999999993 11111 11112222 3445
Q ss_pred CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHH
Q psy2764 209 KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKC 288 (419)
Q Consensus 209 ~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (419)
++.+++..|||+ +...+..|++.- .+|....+..|+..++...+. .+|..
T Consensus 409 pdLKllIsSAT~-DAekFS~fFDda-----pIF~iPGRRyPVdi~Yt~~PE------------------AdYld------ 458 (902)
T KOG0923|consen 409 PDLKLLISSATM-DAEKFSAFFDDA-----PIFRIPGRRYPVDIFYTKAPE------------------ADYLD------ 458 (902)
T ss_pred CcceEEeecccc-CHHHHHHhccCC-----cEEeccCcccceeeecccCCc------------------hhHHH------
Confidence 789999999999 677788888872 344567777787776544333 11111
Q ss_pred HhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC----CCC-----ChhHHH
Q psy2764 289 RKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM----DFS-----TATEKS 359 (419)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~----~~~-----~~~~~~ 359 (419)
..+..++++......+-+|||....+..+.+...|... |-. ....+.
T Consensus 459 ------------------------Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYa 514 (902)
T KOG0923|consen 459 ------------------------AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYA 514 (902)
T ss_pred ------------------------HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccc
Confidence 11223333333445566999999887766665555432 211 111222
Q ss_pred HH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC
Q psy2764 360 KI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG 400 (419)
Q Consensus 360 ~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~ 400 (419)
.+ .+...++.+---+|.- +|++||++++..|-|+.+.
T Consensus 515 NLPselQakIFePtP~gaR----KVVLATNIAETSlTIdgI~ 552 (902)
T KOG0923|consen 515 NLPSELQAKIFEPTPPGAR----KVVLATNIAETSLTIDGIK 552 (902)
T ss_pred cCChHHHHhhcCCCCCCce----eEEEeecchhhceeecCeE
Confidence 22 4445556666655555 8999999999999887654
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=3.5e-13 Score=132.80 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=90.2
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+..|++.|.-..-.++.|. ++.+.||.|||+++.+++....-.|..+-+++|+.-||.|-++.+..++.. ++++
T Consensus 76 g~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i 153 (764)
T PRK12326 76 GLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWI 153 (764)
T ss_pred CCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3446888988887777764 679999999999998888777778999999999999999999999988875 4445
Q ss_pred eccceec-----CCCcEEEEcHHHH-----HHHHhc--CCCCCCCccEEEEeCCccc
Q psy2764 147 TGDFQIN-----TTASCLVMTTEIL-----RSMLYR--GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 147 ~g~~~~~-----~~~~Iiv~Tp~~l-----~~~~~~--~~~~l~~~~~lIiDE~h~l 191 (419)
.++.+.. -.++|+++|..-+ .+.+.. .....+.+.+.||||+|.+
T Consensus 154 ~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 154 TEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred CCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 5554432 2589999998643 222211 1224567889999999965
No 126
>KOG0924|consensus
Probab=99.47 E-value=5.5e-13 Score=127.78 Aligned_cols=259 Identities=15% Similarity=0.173 Sum_probs=157.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEeccc
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTGDF 150 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g~~ 150 (419)
...+.+.+..+..++.+++++.||||||+- ++-... -.....+-+..|.|.-|..++.++..-.+ .+|.-.|-.
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 344555566667889999999999999965 333222 22456788889999999999999976543 333333311
Q ss_pred ----e-ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCccc-CCCcchHHHHHHHHh---cCCCCcEEEEeeecC
Q psy2764 151 ----Q-INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYI-NDSERGHVWEEVLIL---LPKEVCIVMLSATVP 221 (419)
Q Consensus 151 ----~-~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l-~~~~~~~~~~~i~~~---~~~~~~~l~~SAT~~ 221 (419)
+ -.+...|=+.|-+.|+.-.... ..|.++.+||+||||.= ++ ...+-.++.. -+.+.++|.+|||+
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslN---tDilfGllk~~larRrdlKliVtSATm- 510 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLN---TDILFGLLKKVLARRRDLKLIVTSATM- 510 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccc---hHHHHHHHHHHHHhhccceEEEeeccc-
Confidence 1 1244668899999887654433 35788999999999931 11 1112222221 13589999999999
Q ss_pred ChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCC
Q psy2764 222 NTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGK 301 (419)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (419)
+...+..|+++-+ .+.-..+..|++..+...+. .+|.
T Consensus 511 ~a~kf~nfFgn~p-----~f~IpGRTyPV~~~~~k~p~------------------eDYV-------------------- 547 (1042)
T KOG0924|consen 511 DAQKFSNFFGNCP-----QFTIPGRTYPVEIMYTKTPV------------------EDYV-------------------- 547 (1042)
T ss_pred cHHHHHHHhCCCc-----eeeecCCccceEEEeccCch------------------HHHH--------------------
Confidence 7778999998522 22334555666555433322 1111
Q ss_pred CCCCCCCCcchhHHHHHHHHH---HHcCCCCEEEEEcchhhHHH----HHHHhhcCC------CCChhHHHHHH-HHHHH
Q psy2764 302 LNGPFTRGAEKNLFISFLNYL---RKSQNLPVVLFTLSRKRCDQ----NAANLLSMD------FSTATEKSKIH-RFFQD 367 (419)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~LIF~~t~~~~~~----l~~~L~~~~------~~~~~~~~~~~-~~r~~ 367 (419)
-.++.+.+ .....+-+|||....+..+- +...|.+.. +......+.++ .-..+
T Consensus 548 -------------eaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~k 614 (1042)
T KOG0924|consen 548 -------------EAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAK 614 (1042)
T ss_pred -------------HHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhh
Confidence 11222222 23444569999987765544 444444432 22222445553 33334
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG 400 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~ 400 (419)
+.+.--.|.- +++|+|++++..+-||...
T Consensus 615 iFq~a~~~vR----K~IvATNIAETSLTi~gI~ 643 (1042)
T KOG0924|consen 615 IFQKAEGGVR----KCIVATNIAETSLTIPGIR 643 (1042)
T ss_pred hcccCCCCce----eEEEeccchhhceeecceE
Confidence 5554444444 8999999999998887544
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.41 E-value=9.9e-12 Score=126.20 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=76.8
Q ss_pred cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC--
Q psy2764 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI-- 401 (419)
Q Consensus 325 ~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l-- 401 (419)
..+.++||||+|++.|+.+++.|...|+.+...|+.+ ..+|.++++.|++|.. .++|||+++++|+|+|++++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i----~vlV~t~~L~rGfdlp~v~lVi 519 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF----DVLVGINLLREGLDIPEVSLVA 519 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc----eEEEEeCHHhCCccccCCcEEE
Confidence 3456799999999999999999999999877765544 7889999999999998 89999999999999999885
Q ss_pred ---------ChhhHHHHHHHHhcCc
Q psy2764 402 ---------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 ---------~~~~r~~ie~~f~~g~ 417 (419)
+...+.+|+...+.|+
T Consensus 520 i~d~eifG~~~~~~~yiqr~GR~gR 544 (652)
T PRK05298 520 ILDADKEGFLRSERSLIQTIGRAAR 544 (652)
T ss_pred EeCCcccccCCCHHHHHHHhccccC
Confidence 3466788888887664
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=2e-12 Score=130.66 Aligned_cols=116 Identities=20% Similarity=0.163 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~ 149 (419)
++++|...--.+. .--|+.+.||.|||+++.+++......|..|-+++|+.-||.|-++.+..++.. ++++.++
T Consensus 83 ~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~ 160 (913)
T PRK13103 83 HFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPF 160 (913)
T ss_pred cchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCC
Confidence 4666665443333 455789999999999998888877778999999999999999999999999876 4445555
Q ss_pred ceecC-----CCcEEEEcHHHH-HHHHhcC------CCCCCCccEEEEeCCccc
Q psy2764 150 FQINT-----TASCLVMTTEIL-RSMLYRG------SDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 150 ~~~~~-----~~~Iiv~Tp~~l-~~~~~~~------~~~l~~~~~lIiDE~h~l 191 (419)
.+... .++|+++|..-+ .+++..+ ....+.+.++||||+|.+
T Consensus 161 ~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 161 QPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred CCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 43322 389999998765 1222211 123478999999999965
No 129
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=1.1e-11 Score=127.61 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCCCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 70 WPFELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
.+|++++.|.+.+..+ ..++.+++.||||+|||++|+.++. .....+.+++|.++|+.|-+|..++...+
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 3466899999988665 4566699999999999999888755 44556689999999999999998877654
No 130
>KOG0926|consensus
Probab=99.37 E-value=1.6e-11 Score=119.92 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=131.2
Q ss_pred HHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHH-----h---cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEe
Q psy2764 80 QAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-----Q---NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVT 147 (419)
Q Consensus 80 ~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~-----~---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~ 147 (419)
+...+|..+.-+||+|.||||||+- .+-... . ..+..+=|..|.|--|..++++...-.+. ++...
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 4456667889999999999999964 332211 1 12457888999999999998888665443 33211
Q ss_pred -ccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-------C------CCCcE
Q psy2764 148 -GDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-------P------KEVCI 213 (419)
Q Consensus 148 -g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-------~------~~~~~ 213 (419)
=+....+...|-++|.+.|+.-+.+. ..|..+..||+||||.=. -+-..+-.+++++ . +..++
T Consensus 341 Rfd~ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKL 417 (1172)
T KOG0926|consen 341 RFDGTIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS--VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKL 417 (1172)
T ss_pred EeccccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc--chHHHHHHHHHHHHHHHHHHhhhhcccCceeE
Confidence 13345667899999999998877554 458899999999999311 1222222222221 1 25779
Q ss_pred EEEeeecCChHHHHH--HhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhh
Q psy2764 214 VMLSATVPNTLEFAD--WVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQ 291 (419)
Q Consensus 214 l~~SAT~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (419)
|.||||+ +-.|+.+ .|..+.+. + +....|..|+.+++-.... .+|.
T Consensus 418 IIMSATL-RVsDFtenk~LFpi~pP-l--ikVdARQfPVsIHF~krT~-------------~DYi--------------- 465 (1172)
T KOG0926|consen 418 IIMSATL-RVSDFTENKRLFPIPPP-L--IKVDARQFPVSIHFNKRTP-------------DDYI--------------- 465 (1172)
T ss_pred EEEeeeE-EecccccCceecCCCCc-e--eeeecccCceEEEeccCCC-------------chHH---------------
Confidence 9999998 3333321 11111111 1 1223333444333211111 1111
Q ss_pred hhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC
Q psy2764 292 LEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM 350 (419)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~ 350 (419)
...+...+.+....+.+-+|||+....+++.+++.|++.
T Consensus 466 --------------------~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 466 --------------------AEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred --------------------HHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 122345555556666777999999999999999999875
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=99.37 E-value=7e-13 Score=130.25 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=96.6
Q ss_pred cCCCCccHHHHHHHHHHhc----CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc--
Q psy2764 69 TWPFELDVFQKQAIIKLEE----HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-- 142 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~~----~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-- 142 (419)
..|.+|+|+|++|+....+ +...=+++.+|+|||..++-..-.+ . ..++|+++|+.+|..|+.+.+.+-..-
T Consensus 157 ~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a-~~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 157 KKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-A-AARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-h-hhheEeecchHHHHHHHHHHHhhccCccc
Confidence 4566789999999998743 3445567779999997644333233 2 388999999999999999998764321
Q ss_pred --cceEecccee--------------------------------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 143 --VGLVTGDFQI--------------------------------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 143 --~~~~~g~~~~--------------------------------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
+.++ ++... ..+--|+++|++++...-.-...-+..++++|.|||
T Consensus 235 ~a~aVc-SD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 235 RASAVC-SDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred eeEEEe-cCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 2222 21110 112468999999887666555567889999999999
Q ss_pred cccCCCcchHHHHHHHHhcC-----CCCcEEEEeeecC
Q psy2764 189 HYINDSERGHVWEEVLILLP-----KEVCIVMLSATVP 221 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~-----~~~~~l~~SAT~~ 221 (419)
|+-........=......+. +..+.+-||||+.
T Consensus 314 HRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 314 HRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred hccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 97533221111111111111 2355688999974
No 132
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=6.8e-11 Score=120.24 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=84.5
Q ss_pred CCcchhHHHHHHHHHHH--cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHH
Q psy2764 308 RGAEKNLFISFLNYLRK--SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKR 385 (419)
Q Consensus 308 ~~~~~~~~~~l~~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv 385 (419)
......++.++.+.+.. ..+.++||||+|++.++.+++.|...|++....+.. +..|+..+-.|+.+.. .|+|
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnak-q~~REa~Iia~AG~~g----~VtI 651 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAK-QHDREAEIVAEAGQKG----AVTI 651 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCC-HHHhHHHHHHhcCCCC----eEEE
Confidence 34445678888888844 467899999999999999999999999988776653 6688899999997777 9999
Q ss_pred HHHHHhhhhhhc---cC-----------CCChhhHHHHHHHHhcCc
Q psy2764 386 LEQLLKNGIGVH---HS-----------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 386 ~t~~l~~GIDi~---~~-----------~l~~~~r~~ie~~f~~g~ 417 (419)
||++++||+||+ +| ..+...|..++...+.|+
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGR 697 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGR 697 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhc
Confidence 999999999999 33 345666777777766664
No 133
>KOG4150|consensus
Probab=99.22 E-value=4.4e-11 Score=112.78 Aligned_cols=293 Identities=12% Similarity=-0.002 Sum_probs=187.8
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHH--HhcCCCeEEEEcccHHHHHHHHHHHHHhccc--------c
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL--SQNHKTRTIYTSPIKALSNQKYRDFRETFQD--------V 143 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~--~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--------~ 143 (419)
...+|..++..+.+|+++++...|.+||++++..+... ........+++.|+++++....+-+.-.... +
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 47899999999999999999999999999998777543 3445677899999999988765544322211 2
Q ss_pred ceEecccee------cCCCcEEEEcHHHHHHHHhcCC----CCCCCccEEEEeCCcccCCC---cchHHHHHHHHhcC--
Q psy2764 144 GLVTGDFQI------NTTASCLVMTTEILRSMLYRGS----DVLRDLEYVIFDEVHYINDS---ERGHVWEEVLILLP-- 208 (419)
Q Consensus 144 ~~~~g~~~~------~~~~~Iiv~Tp~~l~~~~~~~~----~~l~~~~~lIiDE~h~l~~~---~~~~~~~~i~~~~~-- 208 (419)
....|+... ..+..++++.|+.+......+. ..+-...++++||+|.+... .-...++.+++.+.
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 222333221 2357899999998876554432 33445678999999976431 12233444444432
Q ss_pred ---CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHH
Q psy2764 209 ---KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKE 285 (419)
Q Consensus 209 ---~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (419)
.+.|++-.+||+....++..-+..... +..+.....|....+++...+.....
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E--~~Li~~DGSPs~~K~~V~WNP~~~P~---------------------- 502 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSE--LELVTIDGSPSSEKLFVLWNPSAPPT---------------------- 502 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcc--eEEEEecCCCCccceEEEeCCCCCCc----------------------
Confidence 489999999999888876655555433 33344555666666665544430000
Q ss_pred HHHHhhhhcCCCCCCCCCCCCCCCcchhH----HHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChh-----
Q psy2764 286 VKCRKQLEKGGSGGGKLNGPFTRGAEKNL----FISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTAT----- 356 (419)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~----- 356 (419)
..+.+... ...+.+.+. .+-++|.||.+|+-|+.+-...++.-+....
T Consensus 503 ---------------------~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~ 559 (1034)
T KOG4150|consen 503 ---------------------SKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEA 559 (1034)
T ss_pred ---------------------chhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00011111 123333333 3445999999999999887666553111111
Q ss_pred ----HHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhcc------CCCChhhHHHHHHHHhcCc
Q psy2764 357 ----EKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHH------SGILPILKEIVEMLFQKGL 417 (419)
Q Consensus 357 ----~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~------~~l~~~~r~~ie~~f~~g~ 417 (419)
-++.+.+.|.++..++-.|+. .-+++|++++-||||-+ .+.|-..-++-+...+.|+
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F~G~L----~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGR 626 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLFGGKL----CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGR 626 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhhCCee----eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccc
Confidence 223345668888877776888 67899999999999864 5567777777777766664
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.21 E-value=1e-10 Score=117.85 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=82.7
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc----eEec
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG----LVTG 148 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~----~~~g 148 (419)
.|++.|.-.--.+ ++.-|+.+.||-|||+++.+++....-.|..|-||+++..||.+-++.+..++.-.| +..+
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~ 153 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQE 153 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCC
Confidence 3566776654333 456789999999999998887765555688899999999999999998888766544 4444
Q ss_pred cceec-----CCCcEEEEcHHHH-----HHHHhc--CCCCCCCccEEEEeCCccc
Q psy2764 149 DFQIN-----TTASCLVMTTEIL-----RSMLYR--GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 149 ~~~~~-----~~~~Iiv~Tp~~l-----~~~~~~--~~~~l~~~~~lIiDE~h~l 191 (419)
+.+.. -.++|+++|..-+ .+.+.. .....+.+.+.||||+|.+
T Consensus 154 ~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 154 GMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred CCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 44332 2489999998533 222211 1124567889999999965
No 135
>KOG0953|consensus
Probab=99.20 E-value=1.7e-11 Score=115.41 Aligned_cols=228 Identities=18% Similarity=0.219 Sum_probs=153.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceec-----CCCcEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQIN-----TTASCLVM 161 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~-----~~~~Iiv~ 161 (419)
+.+-++-++||.|||| +-.+.........++.-|.|-||.++++++.+.+-.+.+++|..... ..+..+-|
T Consensus 190 ~RkIi~H~GPTNSGKT----y~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKT----YRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSC 265 (700)
T ss_pred hheEEEEeCCCCCchh----HHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEE
Confidence 4466888999999999 44444555677899999999999999999999999999999975432 23678888
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHH-HhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEE
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL-ILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYV 240 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~-~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~ 240 (419)
|.|+.. .-..+++.||||++++.+..++..+...+ -...+.+.+.|=-| ..++.+.+...++..+.+
T Consensus 266 TVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGeps----vldlV~~i~k~TGd~vev 333 (700)
T KOG0953|consen 266 TVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPS----VLDLVRKILKMTGDDVEV 333 (700)
T ss_pred EEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCch----HHHHHHHHHhhcCCeeEE
Confidence 887663 23467899999999999988887775544 44445666655322 334444444333333332
Q ss_pred EecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHH
Q psy2764 241 VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLN 320 (419)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (419)
.. ..|-.|+... +.+..
T Consensus 334 ~~-YeRl~pL~v~--------------------------------------------------------------~~~~~ 350 (700)
T KOG0953|consen 334 RE-YERLSPLVVE--------------------------------------------------------------ETALG 350 (700)
T ss_pred Ee-ecccCcceeh--------------------------------------------------------------hhhhh
Confidence 21 1222222110 12222
Q ss_pred HHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCC-ChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhh
Q psy2764 321 YLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFS-TATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGV 396 (419)
Q Consensus 321 ~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~-~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi 396 (419)
.+..-..+-++| |-|++....+...+.+.|.. ++...+.+ ++.|.+.-..|.+.+.++ +||||||++..|++.
T Consensus 351 sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~--dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 351 SLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNEC--DVLVASDAIGMGLNL 425 (700)
T ss_pred hhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCcc--ceEEeeccccccccc
Confidence 333333333544 67888899999999887765 55555544 788888899998733322 999999999999875
No 136
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.20 E-value=2.5e-10 Score=106.06 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=88.2
Q ss_pred HHHHHHHHH-------------hcCCcEEEEcCCCCChhHHHHHHHHHHhcCC-----CeEEEEcccHHHHHHHHHHHHH
Q psy2764 77 FQKQAIIKL-------------EEHNHVFVTAHTSAGKTVIAEYAIALSQNHK-----TRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 77 ~Q~~ai~~~-------------~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~-----~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
||.+++.-+ ...+.+++.-.+|+|||..++..+..+...+ ..+|||+|. .+..|+...+.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 577777655 2447889999999999988766665443221 259999999 888999999999
Q ss_pred hccc----cceEeccc-------eecCCCcEEEEcHHHHH--------HHHhcCCCCCCCccEEEEeCCcccCCCcchHH
Q psy2764 139 TFQD----VGLVTGDF-------QINTTASCLVMTTEILR--------SMLYRGSDVLRDLEYVIFDEVHYINDSERGHV 199 (419)
Q Consensus 139 ~~~~----~~~~~g~~-------~~~~~~~Iiv~Tp~~l~--------~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~ 199 (419)
++.. +..+.|.. ......+++|+|++.+. ..+.. -+.++||+||+|.+-+ .....
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~-~~s~~ 153 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKN-KDSKR 153 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTT-TTSHH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----ccceeEEEeccccccc-ccccc
Confidence 9843 33344443 22345899999999998 12211 2488999999999843 22233
Q ss_pred HHHHHHhcCCCCcEEEEeeecCC
Q psy2764 200 WEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 200 ~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
.. .+..+. ....+++|||+-.
T Consensus 154 ~~-~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YK-ALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HH-HHHCCC-ECEEEEE-SS-SS
T ss_pred cc-cccccc-cceEEeecccccc
Confidence 33 334455 6777899999653
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.19 E-value=2.2e-10 Score=114.05 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHhcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 83 IKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 83 ~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
..+.+++.+++.||||+|||++|++++.... ..+.++||++||++|+.|+.+.+..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3456789999999999999999888865443 257899999999999999999777655
No 138
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.15 E-value=1e-09 Score=112.38 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHh--------cCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhcc---
Q psy2764 75 DVFQKQAIIKLE--------EHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQ--- 141 (419)
Q Consensus 75 ~~~Q~~ai~~~~--------~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~--- 141 (419)
..+|-+|...+. .|-.++-.|.||||||++=+-.+..+.. .+.|..|..-.|.|.-|+...+++..+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 558999998763 3457778899999999764444444443 456999999999999999999988654
Q ss_pred -ccceEeccce-------------e---------------cC------------------------------CCcEEEEc
Q psy2764 142 -DVGLVTGDFQ-------------I---------------NT------------------------------TASCLVMT 162 (419)
Q Consensus 142 -~~~~~~g~~~-------------~---------------~~------------------------------~~~Iiv~T 162 (419)
.+.+++|+.. . .. ..+++|||
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 1444444210 0 00 16899999
Q ss_pred HHHHHHHHh--cC-CCCCC----CccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEeeecCChHH
Q psy2764 163 TEILRSMLY--RG-SDVLR----DLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLSATVPNTLE 225 (419)
Q Consensus 163 p~~l~~~~~--~~-~~~l~----~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~ 225 (419)
++.++.... ++ ...+. --+.|||||+|.+... ....+..++.... -+.++++||||+|....
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 998886652 21 11111 1257999999987543 3334555555433 36899999999997653
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=1.3e-09 Score=110.01 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=84.3
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEec
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTG 148 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g 148 (419)
.++++|...--.+ +.--|+.+.||-|||+++.+++....-.|..|-||.++.-||..=++.+..++.- +|+..+
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~ 162 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQ 162 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECC
Confidence 3466665544444 4556789999999999988887766667888999999999999888888777665 444444
Q ss_pred cceec-----CCCcEEEEcHHHH-----HHHHhc--CCCCCCCccEEEEeCCccc
Q psy2764 149 DFQIN-----TTASCLVMTTEIL-----RSMLYR--GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 149 ~~~~~-----~~~~Iiv~Tp~~l-----~~~~~~--~~~~l~~~~~lIiDE~h~l 191 (419)
+.+.. -.+||+++|+..+ .+.+.. .....+.+.+.||||+|.+
T Consensus 163 ~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 163 DMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred CCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 43322 2489999999755 333332 2235678899999999965
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=1.7e-09 Score=108.73 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEe
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVT 147 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~ 147 (419)
..|+++|.-.--.+..| -|+.+.||=|||+++.+++....-.|..|=|+..+--||.-=.+.+..++.- +|+..
T Consensus 77 ~r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~ 154 (925)
T PRK12903 77 KRPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINK 154 (925)
T ss_pred CCcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeC
Confidence 34577887766555555 3799999999999988887665556778888899999988777776666554 44444
Q ss_pred ccceec-----CCCcEEEEcHHHHH-HHHhcC------CCCCCCccEEEEeCCccc
Q psy2764 148 GDFQIN-----TTASCLVMTTEILR-SMLYRG------SDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 148 g~~~~~-----~~~~Iiv~Tp~~l~-~~~~~~------~~~l~~~~~lIiDE~h~l 191 (419)
.+.... -.++|+++|..-+- +++..+ ....+.+.+.||||+|.+
T Consensus 155 ~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 155 ANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred CCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 443322 24899999986442 222221 123567889999999965
No 141
>KOG0925|consensus
Probab=99.09 E-value=7.3e-09 Score=96.46 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=146.9
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHH-HHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEecccee
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAE-YAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTGDFQI 152 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~-~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g~~~~ 152 (419)
+..+.+-+..+..++-+++++.||||||.-.- +.+-........+.+..|.|.-|.+++.+...-.. .+|.-.|-.-.
T Consensus 49 w~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIr 128 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR 128 (699)
T ss_pred HHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcccccc
Confidence 55666666777899999999999999996411 11222233347788999999999999988865432 23333332111
Q ss_pred cCCC-----cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc--cCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH
Q psy2764 153 NTTA-----SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY--INDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 153 ~~~~-----~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~--l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 225 (419)
.++| -+-+||.++|++-.... -.+..++++|+||||. +...-.--.+..++.. +++.+++.+|||+ ....
T Consensus 129 fEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDiLmGllk~v~~~-rpdLk~vvmSatl-~a~K 205 (699)
T KOG0925|consen 129 FEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDILMGLLKEVVRN-RPDLKLVVMSATL-DAEK 205 (699)
T ss_pred ccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHHHHHHHHHHHhh-CCCceEEEeeccc-chHH
Confidence 1111 12245555555433333 3578899999999993 1111111122222222 2589999999998 4555
Q ss_pred HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCC
Q psy2764 226 FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGP 305 (419)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (419)
+..++++.+ +..+ +. ..|.+.++..... .+|.
T Consensus 206 fq~yf~n~P---ll~v-pg--~~PvEi~Yt~e~e------------------rDyl------------------------ 237 (699)
T KOG0925|consen 206 FQRYFGNAP---LLAV-PG--THPVEIFYTPEPE------------------RDYL------------------------ 237 (699)
T ss_pred HHHHhCCCC---eeec-CC--CCceEEEecCCCC------------------hhHH------------------------
Confidence 777777622 1111 11 3344443322221 1111
Q ss_pred CCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC----CCCChh-----HHHHHHHHHHHHHHhcC---
Q psy2764 306 FTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM----DFSTAT-----EKSKIHRFFQDSIRNLQ--- 373 (419)
Q Consensus 306 ~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~----~~~~~~-----~~~~~~~~r~~~l~~f~--- 373 (419)
...+..++++......+-+|||...-++.+..++.+... +..... .+ +.+.+++.+-.-
T Consensus 238 ------EaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy---P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 238 ------EAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY---PAQQQRIFEPAPEKR 308 (699)
T ss_pred ------HHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC---chhhccccCCCCccc
Confidence 123456666666666677999999988877777766532 211111 11 222222222221
Q ss_pred CcCCCCchhhHHHHHHHhhhhhhcc
Q psy2764 374 NEDDRALPQVKRLEQLLKNGIGVHH 398 (419)
Q Consensus 374 ~g~~~~~~~vlv~t~~l~~GIDi~~ 398 (419)
+|.. -.+|+|+|++++..+-++.
T Consensus 309 ~~~~--~RkvVvstniaetsltidg 331 (699)
T KOG0925|consen 309 NGAY--GRKVVVSTNIAETSLTIDG 331 (699)
T ss_pred CCCc--cceEEEEecchheeeeecc
Confidence 1111 1278899999888776653
No 142
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.06 E-value=1.4e-09 Score=108.72 Aligned_cols=280 Identities=14% Similarity=0.119 Sum_probs=150.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEe--ccceec-CCCcEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVT--GDFQIN-TTASCLVM 161 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~--g~~~~~-~~~~Iiv~ 161 (419)
...-.++.||.|||||.+..-++... ..+..++|+|..+++|+.+...+++...- +..... ++.... ...+-+++
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLiv 127 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIV 127 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEE
Confidence 44577899999999998644444443 35789999999999999999999987643 211111 111222 23567777
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchH-------HHHHHHHhcCCCCcEEEEeeecCCh-HHHHHHhcCc
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH-------VWEEVLILLPKEVCIVMLSATVPNT-LEFADWVGNT 233 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~-------~~~~i~~~~~~~~~~l~~SAT~~~~-~~~~~~l~~~ 233 (419)
+.++|.+.. ...+.++++|||||+-.++.+-+.+ .+..+...+.....+|++-|++... .++.+-+...
T Consensus 128 qIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~ 204 (824)
T PF02399_consen 128 QIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPD 204 (824)
T ss_pred Eehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCC
Confidence 777775433 3356789999999998655433332 3333445566788999999999755 3565544432
Q ss_pred CCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCC---CCCCCCCCCCCCCc
Q psy2764 234 KKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG---SGGGKLNGPFTRGA 310 (419)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 310 (419)
....+.+-+........+ ........+ .......++........... ..+.......+ .+
T Consensus 205 ~~i~vI~n~y~~~~fs~R-------------~~~~~~~l~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 267 (824)
T PF02399_consen 205 ENIHVIVNTYASPGFSNR-------------RCTFLRSLG---TDTLAAALNPEDENADTSPTPKHSPDPTATAAIS-ND 267 (824)
T ss_pred CcEEEEEeeeecCCcccc-------------eEEEecccC---cHHHHHHhCCcccccccCCCcCCCCccccccccc-cc
Confidence 222222111111111111 111111111 11111111100000000000 00000000111 22
Q ss_pred chhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHH
Q psy2764 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLL 390 (419)
Q Consensus 311 ~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l 390 (419)
.......|..-+.. ++++-||++|...++.+++.....+.......+..... -++.+ ++. +|++-|.++
T Consensus 268 ~~tF~~~L~~~L~~--gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv~~W--~~~----~VviYT~~i 336 (824)
T PF02399_consen 268 ETTFFSELLARLNA--GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DVESW--KKY----DVVIYTPVI 336 (824)
T ss_pred hhhHHHHHHHHHhC--CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---ccccc--cce----eEEEEeceE
Confidence 23344455544433 44588999999999999888877643333322221111 12333 233 789999999
Q ss_pred hhhhhhc
Q psy2764 391 KNGIGVH 397 (419)
Q Consensus 391 ~~GIDi~ 397 (419)
.-|++|.
T Consensus 337 tvG~Sf~ 343 (824)
T PF02399_consen 337 TVGLSFE 343 (824)
T ss_pred EEEeccc
Confidence 9999985
No 143
>KOG0385|consensus
Probab=98.98 E-value=1.9e-08 Score=98.54 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=99.7
Q ss_pred CCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHH---HHhcCCCeEEEEcccHHHHHHHHHHHHHhccc--
Q psy2764 72 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-- 142 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~---~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-- 142 (419)
.++++||.+-+.-+ ..|-+.|+.-..|-|||+-.+..+. ...+..+.-||++|.-.| ..|.+.++++.+.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 45899999877543 5778999999999999986443332 223445668999998666 6789999999987
Q ss_pred cceEeccce----------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCc
Q psy2764 143 VGLVTGDFQ----------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVC 212 (419)
Q Consensus 143 ~~~~~g~~~----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~ 212 (419)
+.+++|+.. .....+|+|+|+++...-- ....--..+++||||||++-+.. ..+..+++.+...-
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~n- 319 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDN- 319 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcccc-
Confidence 456778642 1235899999999886321 11111246799999999986532 34456666665433
Q ss_pred EEEEeeec
Q psy2764 213 IVMLSATV 220 (419)
Q Consensus 213 ~l~~SAT~ 220 (419)
.+++|+|+
T Consensus 320 rLLlTGTP 327 (971)
T KOG0385|consen 320 RLLLTGTP 327 (971)
T ss_pred eeEeeCCc
Confidence 47788885
No 144
>KOG0387|consensus
Probab=98.97 E-value=1.4e-08 Score=99.90 Aligned_cols=334 Identities=16% Similarity=0.123 Sum_probs=179.5
Q ss_pred ccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHH--HHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhccc--cc
Q psy2764 74 LDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYA--IALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQD--VG 144 (419)
Q Consensus 74 ~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~--i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~~ 144 (419)
|.+||+..+.-+ .++.-.|+.-..|-|||.-.+.. .+... +--..+|||||. .++.||.+.|.++++. +.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEEE
Confidence 789999988765 35677888999999999632211 12222 334779999998 7899999999999987 44
Q ss_pred eEeccce--------------------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHH
Q psy2764 145 LVTGDFQ--------------------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL 204 (419)
Q Consensus 145 ~~~g~~~--------------------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~ 204 (419)
+++|..+ ......|+++|++.+.- ......--..+++|+||.|.+-+.... +....
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpns~--islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPNSK--ISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCccH--HHHHH
Confidence 4555332 11236799999987742 112223335789999999999654422 33333
Q ss_pred HhcCCCCcEEEEeeecC-ChH-HHHHHhcCcCCccEE---EEecCC-CCccceEEE------------------------
Q psy2764 205 ILLPKEVCIVMLSATVP-NTL-EFADWVGNTKKTKVY---VVSTLK-RPVPLKHFL------------------------ 254 (419)
Q Consensus 205 ~~~~~~~~~l~~SAT~~-~~~-~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~------------------------ 254 (419)
..++ ..+.+.+|.|+- |.. ++...+.-..+..+- +|...+ .|+.+..+.
T Consensus 361 kki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~Py 439 (923)
T KOG0387|consen 361 KKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPY 439 (923)
T ss_pred Hhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4444 455677888864 332 333222221111110 000000 000000000
Q ss_pred ---------EeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCC---CCC------CCCCC------------
Q psy2764 255 ---------YVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGG---SGG------GKLNG------------ 304 (419)
Q Consensus 255 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~------------ 304 (419)
....-..+.+.++++.- -..+-.-|...++..+-...-... ..| .+.++
T Consensus 440 lLRR~K~dv~~~~Lp~K~E~VlfC~L-T~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 440 LLRRMKSDVKGLKLPKKEEIVLFCRL-TKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHhhhccCCCccceEEEEec-cHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccccc
Confidence 00000112222221110 001111111111111111000000 001 01111
Q ss_pred ------CCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh-cCCCCChh-HHHHHHHHHHHHHHhcCCcC
Q psy2764 305 ------PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL-SMDFSTAT-EKSKIHRFFQDSIRNLQNED 376 (419)
Q Consensus 305 ------~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~-~~~~~~~~-~~~~~~~~r~~~l~~f~~g~ 376 (419)
....+-...++..++..+. ..+.++|.|..++..-.-+...|. ..|++... ++......|+..+++|.++.
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~ 597 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDE 597 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCC
Confidence 1111112223333433332 344589999999999999999998 46766555 33334678999999999666
Q ss_pred CCCchhhHHHHHHHhhhhhhccCC---------CChhhHHHHHHHHhcCc
Q psy2764 377 DRALPQVKRLEQLLKNGIGVHHSG---------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 377 ~~~~~~vlv~t~~l~~GIDi~~~~---------l~~~~r~~ie~~f~~g~ 417 (419)
.- .-.|++|.+..-|+..--++ =|..+-+..|++++=|.
T Consensus 598 s~--~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 598 SI--FVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred ce--EEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 52 23588999999998875544 25566677777777663
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.93 E-value=1.1e-08 Score=105.01 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=51.8
Q ss_pred CCccHHHHHHHHHH----hc-----CCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHH
Q psy2764 72 FELDVFQKQAIIKL----EE-----HNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~----~~-----~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
|+.++-|.+....+ .. ++.+++.||||+|||++|+++.. .....+.++||-+.|++|-+|+..
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 66799999966654 23 47899999999999999888854 445578999999999999999863
No 146
>KOG1000|consensus
Probab=98.89 E-value=4.1e-08 Score=91.75 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=100.3
Q ss_pred ccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc---cceEecc
Q psy2764 74 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD---VGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~---~~~~~g~ 149 (419)
+-|+|.+-+.. +..|..+++.-..|-|||+-++........ ....||++|. .+-..|.+.+.++++. +.+..++
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-EwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-EWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-cCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 56789997765 578999999999999999876544444433 4458889997 6677889999998876 3334343
Q ss_pred ceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 150 FQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 150 ~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
.+.- ....|.|.+++.+..+-.. ..-...+++|+||+|++-+.. ......+...+..-.++|++|+|+.
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPa 349 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPA 349 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcc
Confidence 3222 2367899999987644322 223458899999999986533 2335555555666678999999964
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.87 E-value=4.3e-09 Score=106.24 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=92.3
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc--ccceEecccee-----------cCCCcE
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ--DVGLVTGDFQI-----------NTTASC 158 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~--~~~~~~g~~~~-----------~~~~~I 158 (419)
+..+.+|||||.+|+-++......+.++||++|...|+.|+.++|++.|+ .+.+++++.+. ..+..|
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 34444699999999988988888899999999999999999999999986 37778886542 234789
Q ss_pred EEEcHHHHHHHHhcCCCCCCCccEEEEeCCccc--CCC-cchHHHHHHH--HhcCCCCcEEEEeeecCCh
Q psy2764 159 LVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYI--NDS-ERGHVWEEVL--ILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 159 iv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l--~~~-~~~~~~~~i~--~~~~~~~~~l~~SAT~~~~ 223 (419)
+|+|-..++ ..++++++|||||-|.- -+. ......+.+. +.-..+..+++.|||++-+
T Consensus 244 ViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 244 VVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred EEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 999965443 36789999999999942 111 1111222222 2223589999999998643
No 148
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.86 E-value=8.7e-09 Score=94.48 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=59.7
Q ss_pred ccCCCCccHHHHHHHH----HHhcCCcEEEEcCCCCChhHHHHHHHHH-HhcCCC-----eEEEEcccHHHHHHHHHHHH
Q psy2764 68 HTWPFELDVFQKQAII----KLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKT-----RTIYTSPIKALSNQKYRDFR 137 (419)
Q Consensus 68 ~~~~~~~~~~Q~~ai~----~~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~-----~~lii~Pt~~L~~q~~~~~~ 137 (419)
+.|||+++|.|.+.+. .+..|+++++.||||+|||++++.++.. ....+. +++|.++|.++..|....++
T Consensus 3 ~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 3 FYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 5689999999999554 4578899999999999999998888653 333333 89999999999999988887
Q ss_pred Hhc
Q psy2764 138 ETF 140 (419)
Q Consensus 138 ~~~ 140 (419)
+..
T Consensus 83 ~~~ 85 (289)
T smart00489 83 KLM 85 (289)
T ss_pred hcc
Confidence 764
No 149
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.86 E-value=8.7e-09 Score=94.48 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=59.7
Q ss_pred ccCCCCccHHHHHHHH----HHhcCCcEEEEcCCCCChhHHHHHHHHH-HhcCCC-----eEEEEcccHHHHHHHHHHHH
Q psy2764 68 HTWPFELDVFQKQAII----KLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKT-----RTIYTSPIKALSNQKYRDFR 137 (419)
Q Consensus 68 ~~~~~~~~~~Q~~ai~----~~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~-----~~lii~Pt~~L~~q~~~~~~ 137 (419)
+.|||+++|.|.+.+. .+..|+++++.||||+|||++++.++.. ....+. +++|.++|.++..|....++
T Consensus 3 ~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 3 FYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 5689999999999554 4578899999999999999998888653 333333 89999999999999988887
Q ss_pred Hhc
Q psy2764 138 ETF 140 (419)
Q Consensus 138 ~~~ 140 (419)
+..
T Consensus 83 ~~~ 85 (289)
T smart00488 83 KLM 85 (289)
T ss_pred hcc
Confidence 764
No 150
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.84 E-value=2.7e-08 Score=88.85 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=54.2
Q ss_pred ccHHHHHHHHHHhcCCc-EEEEcCCCCChhHHHHHHHHHH--------hcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 74 LDVFQKQAIIKLEEHNH-VFVTAHTSAGKTVIAEYAIALS--------QNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~-~iv~apTGsGKT~~~~~~i~~~--------~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
+++.|.+|+..++.... .+|.||.|||||.+....+..+ ...+.++|+++|+..-++++.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 68899999999988888 9999999999997655555555 57889999999999999999999998
No 151
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.81 E-value=3.8e-08 Score=85.05 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce
Q psy2764 74 LDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~ 151 (419)
|++-|.+|+..+..+ +-.++.+|.|+|||.+.......+...+.++++++||...+.+..+...
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~-------------- 67 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG-------------- 67 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT--------------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC--------------
Confidence 688999999998533 4678889999999976554455566678999999999999988777632
Q ss_pred ecCCCcEEEEcHHHHHHHHhcCC----CCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC-CCcEEEEee
Q psy2764 152 INTTASCLVMTTEILRSMLYRGS----DVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-EVCIVMLSA 218 (419)
Q Consensus 152 ~~~~~~Iiv~Tp~~l~~~~~~~~----~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~-~~~~l~~SA 218 (419)
+-..|-.+++....... ..+...++|||||+-++. ...+..++..+.. +.+++++.=
T Consensus 68 ------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 68 ------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp ------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred ------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 11233333322111110 015567899999999874 3457777777775 677776643
No 152
>KOG0384|consensus
Probab=98.68 E-value=1.9e-07 Score=96.09 Aligned_cols=318 Identities=18% Similarity=0.168 Sum_probs=178.0
Q ss_pred CCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHH---HHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-cc
Q psy2764 72 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAE---YAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DV 143 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~---~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~ 143 (419)
-+++.||..-+.-+ ..+.++|+.-..|-|||+--. ..+.....-.+..|||+|.-. +..|...|..+.. ++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst-~~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLST-ITAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhh-hHHHHHHHHHHhhhce
Confidence 45899999977654 688999999999999997432 223333334455888899855 4567777777762 24
Q ss_pred ceEeccce----------------ecCCCcEEEEcHHHHHHHHhcCCCCCC--CccEEEEeCCcccCCCcchHHHHHHHH
Q psy2764 144 GLVTGDFQ----------------INTTASCLVMTTEILRSMLYRGSDVLR--DLEYVIFDEVHYINDSERGHVWEEVLI 205 (419)
Q Consensus 144 ~~~~g~~~----------------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~--~~~~lIiDE~h~l~~~~~~~~~~~i~~ 205 (419)
.+++|+.. ..-+.+++++|++.++. ....|. ...++++||||+|-+ ....+...+.
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk----Dk~~L~~i~w~~~~vDeahrLkN--~~~~l~~~l~ 521 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK----DKAELSKIPWRYLLVDEAHRLKN--DESKLYESLN 521 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc----cHhhhccCCcceeeecHHhhcCc--hHHHHHHHHH
Confidence 45566531 11247899999998863 212233 356899999999864 2233333455
Q ss_pred hcCCCCcEEEEeeecC-ChH-HHHHHhcCcCCccEEEEec---CC---------------CCccceEEE--EeCCccccc
Q psy2764 206 LLPKEVCIVMLSATVP-NTL-EFADWVGNTKKTKVYVVST---LK---------------RPVPLKHFL--YVGPVLEKN 263 (419)
Q Consensus 206 ~~~~~~~~l~~SAT~~-~~~-~~~~~l~~~~~~~~~~~~~---~~---------------~~~~~~~~~--~~~~~~~~~ 263 (419)
.+.-+.+ ++.|.|+- |.. ++...+.-..+........ .. .|.-++... +......+.
T Consensus 522 ~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~ 600 (1373)
T KOG0384|consen 522 QFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKE 600 (1373)
T ss_pred Hhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCc
Confidence 5554444 66777753 444 3443333222222211000 00 011000000 000012223
Q ss_pred ceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCC------------CCCCCCCCCCc-------------chhHHHHH
Q psy2764 264 QLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGG------------GKLNGPFTRGA-------------EKNLFISF 318 (419)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-------------~~~~~~~l 318 (419)
+.++.|+ -...-.+||..+..+--.....-...+ .++.-|+.... ....+..+
T Consensus 601 E~IlrVe--ls~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 601 ETILRVE--LSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred ceEEEee--hhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 3333221 122235555555543222221111111 01221111111 11122222
Q ss_pred HH----------HH--HHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHH
Q psy2764 319 LN----------YL--RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKR 385 (419)
Q Consensus 319 ~~----------~l--~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv 385 (419)
+. +| ....++++|||..=+..-+-|+++|...+++-....+.+ .+.|++.++.|..-.... --.|.
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~Sdd-FvFLL 757 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDD-FVFLL 757 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCc-eEEEE
Confidence 21 11 134568899999999999999999999999888766666 678999999998544421 24689
Q ss_pred HHHHHhhhhhhccCC
Q psy2764 386 LEQLLKNGIGVHHSG 400 (419)
Q Consensus 386 ~t~~l~~GIDi~~~~ 400 (419)
||.+..-||+.-.++
T Consensus 758 STRAGGLGINLatAD 772 (1373)
T KOG0384|consen 758 STRAGGLGINLATAD 772 (1373)
T ss_pred ecccCcccccccccc
Confidence 999999999876554
No 153
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.64 E-value=5.3e-07 Score=95.32 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=89.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHHHHHHhccccceE--eccc-----eec-CCCcE
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLV--TGDF-----QIN-TTASC 158 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~--~g~~-----~~~-~~~~I 158 (419)
+..+|+=-||||||+.-.+..-.+ ....+.++||+-++.|-.|+.+.+..+....... .... ... ....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 579999999999998765554433 3467999999999999999999999886542221 1111 011 13589
Q ss_pred EEEcHHHHHHHHhcC-CCCCCCc-cEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 159 LVMTTEILRSMLYRG-SDVLRDL-EYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 159 iv~Tp~~l~~~~~~~-~~~l~~~-~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
+|+|.+++....... ...+.+- =++|+||||+- .++..-..+...++ +...+|||+||-.
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~ 415 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIF 415 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCccc
Confidence 999999997766543 1112222 27899999974 45554444444454 5889999999753
No 154
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.64 E-value=5e-07 Score=93.27 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=81.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHH-----Hhccc------c--ceEeccc---
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFR-----ETFQD------V--GLVTGDF--- 150 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~-----~~~~~------~--~~~~g~~--- 150 (419)
.++.+.++||+|||.+|+-.|..+.+ ...+.||+||+.+..+.+.+.+. ..|.. + -++.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 38999999999999998888876644 45789999999999888876655 22221 1 1122211
Q ss_pred ----e-e-------------cCCCcEEEEcHHHHHHHHh-cC---------C-CC---CCCc-cEEEEeCCcccCCCcch
Q psy2764 151 ----Q-I-------------NTTASCLVMTTEILRSMLY-RG---------S-DV---LRDL-EYVIFDEVHYINDSERG 197 (419)
Q Consensus 151 ----~-~-------------~~~~~Iiv~Tp~~l~~~~~-~~---------~-~~---l~~~-~~lIiDE~h~l~~~~~~ 197 (419)
. . .....|+|.|.+.+.+-.. +. . .. ++.. -+||+||.|++... .
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 0 0136899999998865221 10 0 11 1111 27999999998542 2
Q ss_pred HHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 198 HVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 198 ~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
..++.+ ..+.+ .-++.+|||.+.
T Consensus 218 k~~~~i-~~lnp-l~~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKP-QMIIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCc-ccEEEEeeecCC
Confidence 344444 33332 235779999976
No 155
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.63 E-value=3.3e-07 Score=81.93 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=87.5
Q ss_pred cCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcccc----c
Q psy2764 69 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV----G 144 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~----~ 144 (419)
..++.|++.|..+.-.+..|+ ++...||=|||+++.++.....-.|..|=|++.+..||..=++.+..++... +
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 334557888888887776665 8999999999999877766656678889999999999999998888877654 4
Q ss_pred eEeccceecC-----CCcEEEEcHHHHHH-HHhc----CC--CCCCCccEEEEeCCccc-CCCc
Q psy2764 145 LVTGDFQINT-----TASCLVMTTEILRS-MLYR----GS--DVLRDLEYVIFDEVHYI-NDSE 195 (419)
Q Consensus 145 ~~~g~~~~~~-----~~~Iiv~Tp~~l~~-~~~~----~~--~~l~~~~~lIiDE~h~l-~~~~ 195 (419)
...++.+... .++|+.+|...+.- .+.. .. ...+.++++||||+|.+ .|..
T Consensus 151 ~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea 214 (266)
T PF07517_consen 151 IITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEA 214 (266)
T ss_dssp EEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGC
T ss_pred cCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecC
Confidence 4555544322 48999999986652 3322 11 13578899999999954 4433
No 156
>KOG1803|consensus
Probab=98.52 E-value=3.7e-07 Score=87.85 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=58.5
Q ss_pred CCCccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2764 71 PFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 137 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~ 137 (419)
+..+.+-|++|+...... .-.++.||+|+|||......|..+.+.+.++|+++||.+-++.+.+++.
T Consensus 183 ~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 445889999999987555 6788999999999988777888888999999999999999999999765
No 157
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.50 E-value=9.1e-07 Score=75.94 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~ 151 (419)
.++.|+.++.++.....+++.||.|||||++++....... ....+++++-|..+..++ +|.+.|+..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~-----------lGflpG~~~ 73 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED-----------LGFLPGDLE 73 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---------------SS-----
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc-----------cccCCCCHH
Confidence 4889999999999999999999999999988777665443 345688888888764222 333333321
Q ss_pred ec-------------------------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh
Q psy2764 152 IN-------------------------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206 (419)
Q Consensus 152 ~~-------------------------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~ 206 (419)
.+ .+..|-+..+..+ +++ .+. -.+||+|||+.+. ...+..++.+
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGr-t~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGR-TFD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCc-ccc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 11 1234444443322 222 122 2799999999763 4568888899
Q ss_pred cCCCCcEEEEee
Q psy2764 207 LPKEVCIVMLSA 218 (419)
Q Consensus 207 ~~~~~~~l~~SA 218 (419)
++++.+++++.=
T Consensus 143 ~g~~skii~~GD 154 (205)
T PF02562_consen 143 IGEGSKIIITGD 154 (205)
T ss_dssp B-TT-EEEEEE-
T ss_pred cCCCcEEEEecC
Confidence 998888887653
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.49 E-value=3.9e-06 Score=80.03 Aligned_cols=234 Identities=13% Similarity=0.096 Sum_probs=132.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccc-------------cce------------------------Eeccce-------
Q psy2764 116 KTRTIYTSPIKALSNQKYRDFRETFQD-------------VGL------------------------VTGDFQ------- 151 (419)
Q Consensus 116 ~~~~lii~Pt~~L~~q~~~~~~~~~~~-------------~~~------------------------~~g~~~------- 151 (419)
.++||||+|+|..|-++.+.+.++.+. .|+ +.|+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 689999999999999999998887653 110 111110
Q ss_pred -ec----------CCCcEEEEcHHHHHHHHhc------CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc---C---
Q psy2764 152 -IN----------TTASCLVMTTEILRSMLYR------GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL---P--- 208 (419)
Q Consensus 152 -~~----------~~~~Iiv~Tp~~l~~~~~~------~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~---~--- 208 (419)
.. -++|||||+|=-|...+.. ...+|..+.++|+|.||.+.-+.+.. +..++..+ |
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCC
Confidence 00 1289999999877766663 34578999999999999876544433 33344333 2
Q ss_pred ------------------CCCcEEEEeeecCChHH-HHHH-hcCcCCccEEEEecCCCCccceEEEEeCCcccccceeee
Q psy2764 209 ------------------KEVCIVMLSATVPNTLE-FADW-VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI 268 (419)
Q Consensus 209 ------------------~~~~~l~~SAT~~~~~~-~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (419)
.-+|+|++|+....... +... +.+. ...+.+...... ............+.+..
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~-~G~v~~~~~~~~-----~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNY-AGKVRLKPPYEA-----SGVISQVVVQVRQVFQR 269 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCc-cceEEEeecccc-----ceeeeccccCCceEEEE
Confidence 13799999999865543 3222 2221 111111111110 00011111112222322
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHH-HcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLR-KSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
++........ . ..-+.....++-.+. ......+|||++|--.=..+-..|
T Consensus 270 ~~~~s~~~~~--d---------------------------~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~l 320 (442)
T PF06862_consen 270 FDCSSPADDP--D---------------------------ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYL 320 (442)
T ss_pred ecCCCcchhh--h---------------------------HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHH
Confidence 2211110000 0 000111223344444 555678999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHH
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQL 389 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~ 389 (419)
++.+++-...++.. ..+-.+.-..|.+|.. ++|+.|.=
T Consensus 321 k~~~~sF~~i~EYts~~~isRAR~~F~~G~~----~iLL~TER 359 (442)
T PF06862_consen 321 KKENISFVQISEYTSNSDISRARSQFFHGRK----PILLYTER 359 (442)
T ss_pred HhcCCeEEEecccCCHHHHHHHHHHHHcCCc----eEEEEEhH
Confidence 98776655433322 3444556677888887 77777643
No 159
>KOG0392|consensus
Probab=98.48 E-value=1.4e-06 Score=89.82 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=100.5
Q ss_pred cccccccCCCC--ccHHHHHHHHHH--h--cCCcEEEEcCCCCChhHHHHHHHH--HHhc-------CCCeEEEEcccHH
Q psy2764 63 VPIMAHTWPFE--LDVFQKQAIIKL--E--EHNHVFVTAHTSAGKTVIAEYAIA--LSQN-------HKTRTIYTSPIKA 127 (419)
Q Consensus 63 l~~~~~~~~~~--~~~~Q~~ai~~~--~--~~~~~iv~apTGsGKT~~~~~~i~--~~~~-------~~~~~lii~Pt~~ 127 (419)
++.+....|.+ ++.||++-+.-+ + =+-+.|++-..|-|||+-.+..+. +..+ .....|||||+ .
T Consensus 963 i~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-T 1041 (1549)
T KOG0392|consen 963 IPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-T 1041 (1549)
T ss_pred CCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-h
Confidence 34444444544 899999987654 2 235889999999999986443333 2222 23448999998 8
Q ss_pred HHHHHHHHHHHhccc--cceEeccce----e---cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchH
Q psy2764 128 LSNQKYRDFRETFQD--VGLVTGDFQ----I---NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198 (419)
Q Consensus 128 L~~q~~~~~~~~~~~--~~~~~g~~~----~---~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~ 198 (419)
|+-.|...+.++++- +-.+.|... . -.+.+|+|+.++.+.+-...- .-....++|+||-|.+-+ ...
T Consensus 1042 LtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l--~~~~wNYcVLDEGHVikN--~kt 1117 (1549)
T KOG0392|consen 1042 LTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL--IKIDWNYCVLDEGHVIKN--SKT 1117 (1549)
T ss_pred hhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH--HhcccceEEecCcceecc--hHH
Confidence 999999999999886 333444322 1 124799999999876322110 112467999999998854 333
Q ss_pred HHHHHHHhcCCCCcEEEEeeecC
Q psy2764 199 VWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 199 ~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
.+.....++..+.+ +.+|+|+-
T Consensus 1118 kl~kavkqL~a~hR-LILSGTPI 1139 (1549)
T KOG0392|consen 1118 KLTKAVKQLRANHR-LILSGTPI 1139 (1549)
T ss_pred HHHHHHHHHhhcce-EEeeCCCc
Confidence 44556666665555 66688863
No 160
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.46 E-value=1e-06 Score=83.66 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..++|.|..|||||++++..+..+ ...+.++++++++.+|...+...+.+.. ........+..+..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------~~~~~~~~~~~~~~~ 70 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------NPKLKKSDFRKPTSF 70 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------ccchhhhhhhhhHHH
Confidence 357899999999999987777777 6788999999999999999998887643 011122233444444
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
..............++|||||||++.+
T Consensus 71 i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 71 INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HhhcccccccCCcCCEEEEehhHhhhh
Confidence 433322234567899999999999976
No 161
>KOG0390|consensus
Probab=98.45 E-value=3.1e-06 Score=85.30 Aligned_cols=142 Identities=16% Similarity=0.151 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHH---h-------cCCcEEEEcCCCCChhHHHHHHHHHHhc--CC-----CeEEEEcccHHHHHHHHHHH
Q psy2764 74 LDVFQKQAIIKL---E-------EHNHVFVTAHTSAGKTVIAEYAIALSQN--HK-----TRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 74 ~~~~Q~~ai~~~---~-------~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~-----~~~lii~Pt~~L~~q~~~~~ 136 (419)
++|||++.+.-+ + ...-.|+.-..|+|||+..+..+..+++ +. .+.|||+|. .|+.-|++.|
T Consensus 239 LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF 317 (776)
T KOG0390|consen 239 LRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEF 317 (776)
T ss_pred cCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHH
Confidence 799999999865 1 2234566667899999865555554443 44 679999998 8999999999
Q ss_pred HHhccc--cc--eEecccee--------------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchH
Q psy2764 137 RETFQD--VG--LVTGDFQI--------------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198 (419)
Q Consensus 137 ~~~~~~--~~--~~~g~~~~--------------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~ 198 (419)
.++... +. .+.|.... .....|++.+.+.+...+.. .....++++|+||.|.+-+ ...
T Consensus 318 ~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN--~~s 393 (776)
T KOG0390|consen 318 GKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN--SDS 393 (776)
T ss_pred HHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc--hhh
Confidence 999874 22 23343321 01256778888888644433 3456789999999998854 223
Q ss_pred HHHHHHHhcCCCCcEEEEeeecC
Q psy2764 199 VWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 199 ~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
.+...+..+.. .+.|++|+|+-
T Consensus 394 ~~~kaL~~l~t-~rRVLLSGTp~ 415 (776)
T KOG0390|consen 394 LTLKALSSLKT-PRRVLLTGTPI 415 (776)
T ss_pred HHHHHHHhcCC-CceEEeeCCcc
Confidence 34455555654 45588899974
No 162
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.44 E-value=3.1e-06 Score=84.84 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc--C---CCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--H---KTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~--~---~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
.+.|+.|+..++.++..++.|+.|||||++....+..+.. + ..++++++||-.-+..+.+.+.......... .
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-~- 224 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-E- 224 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-h-
Confidence 3689999999999999999999999999875444433321 1 2579999999999888888776644322110 0
Q ss_pred ceecCCCcEEEEcHHHHHHHHh------cCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEee
Q psy2764 150 FQINTTASCLVMTTEILRSMLY------RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSA 218 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~~------~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SA 218 (419)
.......+-..|..+++.... ........+++||||||-++. ...+..+++.++...++|++.=
T Consensus 225 -~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD 294 (586)
T TIGR01447 225 -ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGD 294 (586)
T ss_pred -hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECC
Confidence 000011122455555543211 111233468999999999874 3467788888888899888753
No 163
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.44 E-value=2.9e-06 Score=87.52 Aligned_cols=126 Identities=20% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhccccceEe
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETFQDVGLVT 147 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~--~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~ 147 (419)
.++.+++-|++|+..+..++.+++.++.|+|||.+....+..+...+ ..+++++||-.-+..+.+.. +.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~----g~----- 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT----GL----- 390 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc----CC-----
Confidence 35668999999999998899999999999999987544444444444 68999999988887554332 10
Q ss_pred ccceecCCCcEEEEcHHHHHHHHhcC-----CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeee
Q psy2764 148 GDFQINTTASCLVMTTEILRSMLYRG-----SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 148 g~~~~~~~~~Iiv~Tp~~l~~~~~~~-----~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT 219 (419)
--.|..+++...... .......++||||||+++.. ..+..+++.++.+.+++++.=.
T Consensus 391 -----------~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 391 -----------TASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred -----------ccccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECcc
Confidence 012333333211110 01123578999999999843 4567777888888898887544
No 164
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.41 E-value=3.7e-06 Score=84.53 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=91.1
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccc
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF 150 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~ 150 (419)
.+.|+.|+.....++..++.+++|+|||++....+..+.. ...++++++||..-+..+.+.+.......+.. ..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-~~- 231 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-DE- 231 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc-hh-
Confidence 5899999999999999999999999999764433333321 24579999999999999888876544332211 00
Q ss_pred eecCCCcEEEEcHHHHHHHHh------cCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeee
Q psy2764 151 QINTTASCLVMTTEILRSMLY------RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 151 ~~~~~~~Iiv~Tp~~l~~~~~------~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT 219 (419)
.......-..|-.+++.... ......-.++++||||+-++. ...+..+++.++++.++|++.=.
T Consensus 232 -~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 232 -QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred -hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEEEecch
Confidence 00011112345555542211 112233456899999999873 45677888888989999888633
No 165
>PRK10536 hypothetical protein; Provisional
Probab=98.39 E-value=7.6e-06 Score=72.30 Aligned_cols=133 Identities=19% Similarity=0.234 Sum_probs=81.6
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHH-H-hcCCCeEEEEcccHHHHHH-------HHHHHHHhccc--
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-S-QNHKTRTIYTSPIKALSNQ-------KYRDFRETFQD-- 142 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~-~-~~~~~~~lii~Pt~~L~~q-------~~~~~~~~~~~-- 142 (419)
.+..|...+..+.++..+++.||+|||||+.+...... + .....++++.-|+.+..+. ..+++.-++.+
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~ 139 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVY 139 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHH
Confidence 58999999999988899999999999999876665553 2 2334567777677653221 12222222221
Q ss_pred --cceEecccee-----cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEE
Q psy2764 143 --VGLVTGDFQI-----NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVM 215 (419)
Q Consensus 143 --~~~~~g~~~~-----~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~ 215 (419)
...+.|.... .+...|-|.....+ ++.. + .-++||+|||+.+.. ..+..++..++.+.++++
T Consensus 140 D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ym-----RGrt-l-~~~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 140 DVLVRRLGASFMQYCLRPEIGKVEIAPFAYM-----RGRT-F-ENAVVILDEAQNVTA----AQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHhChHHHHHHHHhccCcEEEecHHHh-----cCCc-c-cCCEEEEechhcCCH----HHHHHHHhhcCCCCEEEE
Confidence 2222221111 12234555544333 2221 2 237999999998742 667888889998888776
Q ss_pred Ee
Q psy2764 216 LS 217 (419)
Q Consensus 216 ~S 217 (419)
..
T Consensus 209 ~G 210 (262)
T PRK10536 209 NG 210 (262)
T ss_pred eC
Confidence 53
No 166
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.33 E-value=2.8e-07 Score=74.13 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHc--CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHH
Q psy2764 314 LFISFLNYLRKS--QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLL 390 (419)
Q Consensus 314 ~~~~l~~~l~~~--~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l 390 (419)
....+.+.+... .++++||||+++..++.+++.|.+.+......++.+ ...|..+++.|+++.. .++++|+++
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----~ili~t~~~ 88 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI----VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC----cEEEEcChh
Confidence 344555555544 367899999999999999999998666655544444 6778899999999887 899999999
Q ss_pred hhhhhhccCCC
Q psy2764 391 KNGIGVHHSGI 401 (419)
Q Consensus 391 ~~GIDi~~~~l 401 (419)
++|+|+|.++.
T Consensus 89 ~~G~d~~~~~~ 99 (131)
T cd00079 89 ARGIDLPNVSV 99 (131)
T ss_pred hcCcChhhCCE
Confidence 99999998774
No 167
>PF13245 AAA_19: Part of AAA domain
Probab=98.32 E-value=2.3e-06 Score=61.31 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=40.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~----~~~~lii~Pt~~L~~q~~~~~ 136 (419)
..+.-++|.+|.|||||....-.+..+... +.++++++||+..++++.+++
T Consensus 8 ~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 8 AGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 335556679999999996655555544433 789999999999999999988
No 168
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.31 E-value=1.4e-05 Score=71.84 Aligned_cols=148 Identities=23% Similarity=0.179 Sum_probs=95.8
Q ss_pred ccHHHHHHHHHHh----------cCCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 74 LDVFQKQAIIKLE----------EHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 74 ~~~~Q~~ai~~~~----------~~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
++..|.+++-... ...-+++--.||.||--...-.|. .+.+...++|++..+..|..+..+.++.+...
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC
Confidence 5788998885541 345778888899999976444444 34555668999999999999999999987654
Q ss_pred -c-----ceEeccceecCCCcEEEEcHHHHHHHHhcC---CCC-------C-C-CccEEEEeCCcccCCCcc--------
Q psy2764 143 -V-----GLVTGDFQINTTASCLVMTTEILRSMLYRG---SDV-------L-R-DLEYVIFDEVHYINDSER-------- 196 (419)
Q Consensus 143 -~-----~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~---~~~-------l-~-~~~~lIiDE~h~l~~~~~-------- 196 (419)
+ ..+.-+.....+..|+++|+..|......+ ... + + .=.+||+||||..-+...
T Consensus 118 ~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~ 197 (303)
T PF13872_consen 118 NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKT 197 (303)
T ss_pred cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHH
Confidence 1 111111112334679999999887654221 111 1 1 124899999998744322
Q ss_pred hHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 197 GHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 197 ~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
+.....+-+.++ +.+++-+|||-..
T Consensus 198 g~avl~LQ~~LP-~ARvvY~SATgas 222 (303)
T PF13872_consen 198 GIAVLELQNRLP-NARVVYASATGAS 222 (303)
T ss_pred HHHHHHHHHhCC-CCcEEEecccccC
Confidence 123334445554 6789999999643
No 169
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.27 E-value=1.5e-05 Score=82.67 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCCccHHHHHHHHHHhc-CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 71 PFELDVFQKQAIIKLEE-HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~-~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
++.+++-|++|+..+.. ++.++++++.|+|||.+.-.++..+...+.++++++||---+..+.+.. |.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~-------g~---- 418 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAES-------GI---- 418 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhcc-------CC----
Confidence 35689999999999866 5788999999999997755444455567889999999977766554321 10
Q ss_pred ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEe
Q psy2764 150 FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLS 217 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~S 217 (419)
--.|-.++......+...+...++|||||+-++... .+..++... ..+.++|++.
T Consensus 419 ---------~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 419 ---------ESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ---------ceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 112444443222333345668899999999988543 344555532 3567777765
No 170
>KOG1802|consensus
Probab=98.22 E-value=6.6e-06 Score=79.99 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
|+.-|..|..+++...-.++++|+|+|||.+....+.++. ....++|+++|+..-++|+++++.+..-
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgL 479 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGL 479 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCc
Confidence 7999999999999999999999999999988766666553 4678899999999999999999988653
No 171
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.16 E-value=1.1e-05 Score=69.87 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=78.9
Q ss_pred CCCccHHHHHHHHHHh---cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCe-EEEEcccHHHHHHHHHHHHHhccc-cce
Q psy2764 71 PFELDVFQKQAIIKLE---EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR-TIYTSPIKALSNQKYRDFRETFQD-VGL 145 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~---~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~-~lii~Pt~~L~~q~~~~~~~~~~~-~~~ 145 (419)
.+-+++.|.+....+. +|.|.+.+.-+|.|||.+..-.+......+.+ +.+++| ++|..|..+.+...++. ++.
T Consensus 21 ~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCC
Confidence 3447999999888874 46899999999999998743333344445544 555555 58999999999887654 111
Q ss_pred ------Eeccce---------------ecCCCcEEEEcHHHHHHHHhcCC------------------CCCCCccEEEEe
Q psy2764 146 ------VTGDFQ---------------INTTASCLVMTTEILRSMLYRGS------------------DVLRDLEYVIFD 186 (419)
Q Consensus 146 ------~~g~~~---------------~~~~~~Iiv~Tp~~l~~~~~~~~------------------~~l~~~~~lIiD 186 (419)
+.-+.. ......|+++||+.+.++...+. ..+.+...=|+|
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilD 179 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILD 179 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeE
Confidence 111111 11236799999998876543211 122334456899
Q ss_pred CCcccCC
Q psy2764 187 EVHYIND 193 (419)
Q Consensus 187 E~h~l~~ 193 (419)
|+|..+.
T Consensus 180 EsDe~L~ 186 (229)
T PF12340_consen 180 ESDEILS 186 (229)
T ss_pred CchhccC
Confidence 9997654
No 172
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.15 E-value=3.5e-05 Score=81.20 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=83.2
Q ss_pred CCCccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 71 PFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
++.|++-|.+|+..+..+ ..++++++.|+|||++.-.+.-.+...+.+++.++||-.-+..+.+. .|+
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~-------tGi---- 412 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGG-------SGI---- 412 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhc-------cCc----
Confidence 456899999999998764 46899999999999763333334556788999999998766554321 111
Q ss_pred ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeee
Q psy2764 150 FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSAT 219 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT 219 (419)
--.|..++..-...+...+...++|||||+-++.. ..+..++... +.+.++|++.=+
T Consensus 413 ---------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 413 ---------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred ---------chhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEECCH
Confidence 11244444322223344566788999999998854 2455666544 457888887544
No 173
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=8e-06 Score=84.68 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=60.5
Q ss_pred ccCCCCc-cHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHhc-CC--CeEEEEcccHHHHHHHHHHHHHh
Q psy2764 68 HTWPFEL-DVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQN-HK--TRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 68 ~~~~~~~-~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~--~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
..|||++ +|.|.+.+..+ ..++++++.||||+|||++.+.+.+.... .+ .++++++.|..=..|..+.+++.
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4578885 99999977654 68899999999999999998887665433 33 79999999999999999999884
No 174
>KOG1002|consensus
Probab=98.11 E-value=1.8e-05 Score=74.41 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHHhc-----CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc---cce
Q psy2764 74 LDVFQKQAIIKLEE-----HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD---VGL 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~-----~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~---~~~ 145 (419)
+-|+|++-+.-+.. -...|+.-..|.|||.-++.+++. .-.+...||++|+.+| .||.+.+.+.... +-+
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla-e~~ra~tLVvaP~VAl-mQW~nEI~~~T~gslkv~~ 262 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA-EVDRAPTLVVAPTVAL-MQWKNEIERHTSGSLKVYI 262 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh-ccccCCeeEEccHHHH-HHHHHHHHHhccCceEEEE
Confidence 67899987755422 235678889999999765544444 3345569999999987 6899999888664 445
Q ss_pred Eeccceec-----CCCcEEEEcHHHHHHHHhcCC-------------CCCCCc--cEEEEeCCcccCCCcchHHHHHHHH
Q psy2764 146 VTGDFQIN-----TTASCLVMTTEILRSMLYRGS-------------DVLRDL--EYVIFDEVHYINDSERGHVWEEVLI 205 (419)
Q Consensus 146 ~~g~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~-------------~~l~~~--~~lIiDE~h~l~~~~~~~~~~~i~~ 205 (419)
++|..... .+++++.+|+..+.+...+.. ..+..+ .-+|+||||.+-+.. ....+..-
T Consensus 263 YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~--snTArAV~ 340 (791)
T KOG1002|consen 263 YHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ--SNTARAVF 340 (791)
T ss_pred EecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc--ccHHHHHH
Confidence 66644322 358999999988876665421 123333 369999999886522 22222222
Q ss_pred hcCCCCcEEEEeeecC
Q psy2764 206 LLPKEVCIVMLSATVP 221 (419)
Q Consensus 206 ~~~~~~~~l~~SAT~~ 221 (419)
.+. .....++|+|+=
T Consensus 341 ~L~-tt~rw~LSGTPL 355 (791)
T KOG1002|consen 341 ALE-TTYRWCLSGTPL 355 (791)
T ss_pred hhH-hhhhhhccCCcc
Confidence 232 234478888853
No 175
>KOG0389|consensus
Probab=98.10 E-value=1.4e-05 Score=79.36 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=92.6
Q ss_pred CCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHH--HHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc--c
Q psy2764 72 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEY--AIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--V 143 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~--~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~ 143 (419)
++|-+||.--+.-+ ..+-+.|+.-..|-|||.-.+. +.+.-......=|||||+-.| +.|.+.|.+|++. +
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~V 476 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKV 476 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEE
Confidence 44788999877654 4667889999999999964322 222223334557889999665 7899999999997 4
Q ss_pred ceEecccee-----------cCCCcEEEEcHHHHHHHHhcC-CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCC
Q psy2764 144 GLVTGDFQI-----------NTTASCLVMTTEILRSMLYRG-SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211 (419)
Q Consensus 144 ~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~-~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~ 211 (419)
..++|.... ....+|+++|+..+..--... ...-.+++++|+||+|++-+.. ...+..++.. + .-
T Consensus 477 e~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I-~-An 553 (941)
T KOG0389|consen 477 EPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI-N-AN 553 (941)
T ss_pred EeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc-c-cc
Confidence 446665321 125899999997654110000 0112367899999999885533 2223333332 2 34
Q ss_pred cEEEEeeec
Q psy2764 212 CIVMLSATV 220 (419)
Q Consensus 212 ~~l~~SAT~ 220 (419)
..+++|+|+
T Consensus 554 ~RlLLTGTP 562 (941)
T KOG0389|consen 554 FRLLLTGTP 562 (941)
T ss_pred ceEEeeCCc
Confidence 458889886
No 176
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.02 E-value=0.0001 Score=78.32 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=85.8
Q ss_pred CCCccHHHHHHHHHHh-cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 71 PFELDVFQKQAIIKLE-EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~-~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
++.|++-|.+|+..+. .++-++++|+-|+|||++.-...-.+...+.+++.++||-.-+..+.+.. |
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~-------G----- 446 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEA-------G----- 446 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhh-------C-----
Confidence 5668999999999874 56789999999999998754444456667899999999977766554321 1
Q ss_pred ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEeee
Q psy2764 150 FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLSAT 219 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~SAT 219 (419)
|--.|..++......+...+..-++|||||+.++.. ..+..++.... .+.+++++.=+
T Consensus 447 --------i~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 447 --------IQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred --------CCeeeHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHHHHhcCCEEEEECCH
Confidence 112344444322222334566778999999998853 34556666654 57888887544
No 177
>KOG1132|consensus
Probab=98.00 E-value=4.5e-05 Score=76.83 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=54.7
Q ss_pred ccccCCCCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHh---------------c------------
Q psy2764 66 MAHTWPFELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQ---------------N------------ 114 (419)
Q Consensus 66 ~~~~~~~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~---------------~------------ 114 (419)
.-..+||+|++.|..-+..+ ....+.++.+|||+|||++.+...+.++ +
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~ 93 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSG 93 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCC
Confidence 34578999999999866554 5678999999999999997554433221 0
Q ss_pred ---------------CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 115 ---------------HKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 115 ---------------~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
..+++.+-.-|..-..|+.+.+++..
T Consensus 94 g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 94 GEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred CCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 13567777777777888888887753
No 178
>PRK06526 transposase; Provisional
Probab=97.99 E-value=4.3e-05 Score=68.63 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=61.3
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTE 164 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~ 164 (419)
+..+.++++.||+|+|||..+......+...+.+++++. ..+|+.++..... ..+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t-~~~l~~~l~~~~~----------------------~~~~~ 151 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT-AAQWVARLAAAHH----------------------AGRLQ 151 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh-HHHHHHHHHHHHh----------------------cCcHH
Confidence 357789999999999999876665556666677776643 3345555432110 01222
Q ss_pred HHHHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 165 ILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
.... .+.++++|||||+|.+.... ....+..++.....+..+|+.|...+
T Consensus 152 ~~l~-------~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 152 AELV-------KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred HHHH-------HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 2211 23467899999999764222 22233444433222345666665543
No 179
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.96 E-value=1.9e-05 Score=63.46 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=55.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLV 160 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv 160 (419)
+++.+++.||+|+|||.+.......... ....+.+-+|...-...+...+...+..... . -
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~----------~ 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK---S----------R 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS---S----------T
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc---c----------c
Confidence 4578999999999999876555544432 2333344444443344555544443321000 0 1
Q ss_pred EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC-CCcEEEEeeec
Q psy2764 161 MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-EVCIVMLSATV 220 (419)
Q Consensus 161 ~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~-~~~~l~~SAT~ 220 (419)
.+...+.+.+...... ....+|||||+|++. ....++.+...... +.+ +.+++|+
T Consensus 70 ~~~~~l~~~~~~~l~~-~~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~-vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDR-RRVVLLVIDEADHLF---SDEFLEFLRSLLNESNIK-VVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHH-CTEEEEEEETTHHHH---THHHHHHHHHHTCSCBEE-EEEEESS
T ss_pred CCHHHHHHHHHHHHHh-cCCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCe-EEEEECh
Confidence 2333333333221110 112689999999974 14555555544443 444 4445554
No 180
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=0.00014 Score=59.24 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~ 126 (419)
+..+++.||+|+|||..+......+...+..++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 789999999999999775555555544456666665443
No 181
>PRK08181 transposase; Validated
Probab=97.93 E-value=0.00021 Score=64.62 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=67.3
Q ss_pred ccHHHHHHHHH----HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~----~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
+.+.|..++.. +..+.++++.||+|+|||..+......+...+.+++++ +..+|+.++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~l~~a~~~----------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQKLQVARRE----------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHHHHHHHhC-----------
Confidence 45677766643 35788999999999999976554444555567667665 456676666432210
Q ss_pred ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 150 FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
.+.+.+.. .+.++++|||||.+...... ....+-.+++....+..++. |..+
T Consensus 156 -----------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~Ii-TSN~ 208 (269)
T PRK08181 156 -----------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILI-TANQ 208 (269)
T ss_pred -----------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEE-EcCC
Confidence 12222322 23567899999999764322 22234444443322344444 4444
No 182
>KOG4439|consensus
Probab=97.92 E-value=2.2e-05 Score=76.89 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=97.7
Q ss_pred CCccHHHHHHHHHHh-----cCCcEEEEcCCCCChhHHHHHHHHHHh------c----CCCeEEEEcccHHHHHHHHHHH
Q psy2764 72 FELDVFQKQAIIKLE-----EHNHVFVTAHTSAGKTVIAEYAIALSQ------N----HKTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~-----~~~~~iv~apTGsGKT~~~~~~i~~~~------~----~~~~~lii~Pt~~L~~q~~~~~ 136 (419)
+++-|+|+.++.-+. .+.-.|+...-|-|||+.-+..|..-. + ....+|||||- .|+.||+..+
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHH
Confidence 447899999998763 446778889999999986433443211 0 12259999997 7899999999
Q ss_pred HHhccc----cceEecccee------cCCCcEEEEcHHHHHH----HHhc--CCCCCCC--ccEEEEeCCcccCCCcchH
Q psy2764 137 RETFQD----VGLVTGDFQI------NTTASCLVMTTEILRS----MLYR--GSDVLRD--LEYVIFDEVHYINDSERGH 198 (419)
Q Consensus 137 ~~~~~~----~~~~~g~~~~------~~~~~Iiv~Tp~~l~~----~~~~--~~~~l~~--~~~lIiDE~h~l~~~~~~~ 198 (419)
.+.... +-+++|.... -..+||+|+|+..+.. -... ....+.+ ...||+||||.+-+.....
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~ 482 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQC 482 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhH
Confidence 877654 5667776532 1358999999876653 1111 1111222 3579999999886543222
Q ss_pred HHHHHHHhcCCCCcEEEEeeecCC--hHH---HHHHhcCc
Q psy2764 199 VWEEVLILLPKEVCIVMLSATVPN--TLE---FADWVGNT 233 (419)
Q Consensus 199 ~~~~i~~~~~~~~~~l~~SAT~~~--~~~---~~~~l~~~ 233 (419)
...+-.+.... .-++|+|+-. ..| +.+|+++.
T Consensus 483 --S~AVC~L~a~~-RWclTGTPiqNn~~DvysLlrFLr~~ 519 (901)
T KOG4439|consen 483 --SKAVCKLSAKS-RWCLTGTPIQNNLWDVYSLLRFLRCP 519 (901)
T ss_pred --HHHHHHHhhcc-eeecccCccccchhHHHHHHHHhcCC
Confidence 22222333222 2567888642 234 55666663
No 183
>PRK04296 thymidine kinase; Provisional
Probab=97.88 E-value=4.5e-05 Score=65.58 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc---HHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI---KALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTE 164 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt---~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~ 164 (419)
|.-.++.+|+|+|||+.++-.+..+...+.+++++-|. +....++. ...++ .. .. +.+..+.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~-------~~lg~-----~~--~~-~~~~~~~ 66 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVV-------SRIGL-----SR--EA-IPVSSDT 66 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEe-------cCCCC-----cc--cc-eEeCChH
Confidence 34578899999999987666666666678889988663 22211111 11110 10 01 2234455
Q ss_pred HHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 165 ILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
.+...+.. .-.+.++|||||+|.+.
T Consensus 67 ~~~~~~~~---~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 67 DIFELIEE---EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred HHHHHHHh---hCCCCCEEEEEccccCC
Confidence 55544433 23468899999998763
No 184
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00022 Score=72.68 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccc
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDF 150 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~ 150 (419)
+|+=.|.+-.+.-+..-++-+.||=|||+++.++...-.-.+..+.++.-.--|+.--.+.+.+++.. +|+...+.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m 159 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGM 159 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCC
Confidence 33334444455555666789999999999988887766667778888888888888777777776655 44444444
Q ss_pred eecC-----CCcEEEEcHHHHH-----HHHhc--CCCCCCCccEEEEeCCccc
Q psy2764 151 QINT-----TASCLVMTTEILR-----SMLYR--GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 151 ~~~~-----~~~Iiv~Tp~~l~-----~~~~~--~~~~l~~~~~lIiDE~h~l 191 (419)
+... .+||..+|...+- ..+.. .......+.+-|+||+|.+
T Consensus 160 ~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 160 SPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred ChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3322 4899999986442 11111 1234556889999999955
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.87 E-value=4.9e-05 Score=77.36 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 74 LDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
+++.|..|+..++.. ..++|.||+|+|||.+....+..+...+.++++++||..-++++.+++...
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 799999999988765 789999999999998776667777777889999999999999999999874
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.83 E-value=7.1e-05 Score=60.54 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 133 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~ 133 (419)
+..+++.+|+|+|||..+...+..+......++++.+.........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLD 47 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHH
Confidence 5789999999999998755554444444346777777765544333
No 187
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.73 E-value=8.1e-05 Score=69.52 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
+++-|.+++.. ..++++|.|..|||||.+.+.-+..+.. ...++|++++|+..+.++.+++...+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 47889999987 7789999999999999886655554433 35789999999999999999999865432110000
Q ss_pred -----ceecCCCcEEEEcHHHHHHHHhcCC-CCC-CCccEEEEeCCc
Q psy2764 150 -----FQINTTASCLVMTTEILRSMLYRGS-DVL-RDLEYVIFDEVH 189 (419)
Q Consensus 150 -----~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~l-~~~~~lIiDE~h 189 (419)
........+-|+|-..+...+.+.. ... -.-.+-++|+..
T Consensus 79 ~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0011135678899887765443311 111 123466777776
No 188
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.71 E-value=0.00017 Score=68.79 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHH------hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHH--HHHHHHhccccce
Q psy2764 74 LDVFQKQAIIKL------EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK--YRDFRETFQDVGL 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~------~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~--~~~~~~~~~~~~~ 145 (419)
|++-|++++..+ .++.++++.||-|+|||.+.-..+-.+...+..+++++||-.-|..+ ...+..+++ +++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC-ccc
Confidence 678899998887 68899999999999999764444445556678899999998777665 333333332 111
Q ss_pred EeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 146 VTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 146 ~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
-.. ..... .+.+.. .....++.++++|+||+-++..
T Consensus 81 ~~~-----~~~~~---~~~~~~----~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 81 NNN-----EKSQC---KISKNS----RLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred ccc-----ccccc---cccccc----hhhhhhhhheeeecccccchhH
Confidence 000 00000 111111 1223577889999999998754
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.68 E-value=0.0011 Score=59.13 Aligned_cols=117 Identities=12% Similarity=0.092 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHh-------c-CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceE
Q psy2764 75 DVFQKQAIIKLE-------E-HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLV 146 (419)
Q Consensus 75 ~~~Q~~ai~~~~-------~-~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~ 146 (419)
++-|..++..+. . ...+++.+++|+|||..+......+...+..++++ +..+|...+...+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~l~~~~~~-------- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSAMKDTFSN-------- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHHHHHHHhh--------
Confidence 345666665442 1 24799999999999987655555666667777666 444554444333210
Q ss_pred eccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchH-HHHHHHHh-cCCCCcEEEEeeec
Q psy2764 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH-VWEEVLIL-LPKEVCIVMLSATV 220 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~-~~~~i~~~-~~~~~~~l~~SAT~ 220 (419)
. -.+.+.+... +.++++|||||++......+.. .+..++.. ......++. |..+
T Consensus 149 -~-----------~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii-tSNl 204 (244)
T PRK07952 149 -S-----------ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM-LTNS 204 (244)
T ss_pred -c-----------cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE-eCCC
Confidence 0 0123333322 4578999999999765433332 33344432 333444444 4344
No 190
>KOG0391|consensus
Probab=97.61 E-value=0.00029 Score=72.96 Aligned_cols=142 Identities=14% Similarity=0.168 Sum_probs=93.2
Q ss_pred CccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhccccce
Q psy2764 73 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQDVGL 145 (419)
Q Consensus 73 ~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~ 145 (419)
.++.||+.-+.-+ .++-|.|+.-..|-|||.--+-.+.++.. +=+-=||||||-. +..|...|++|+...-+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsv-iLnWEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSV-ILNWEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechh-hhhhhHHHhhhCCcceE
Confidence 4789999988754 57789999999999999754333333322 2244688899955 46688899999987444
Q ss_pred --Eeccce----------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcE
Q psy2764 146 --VTGDFQ----------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCI 213 (419)
Q Consensus 146 --~~g~~~----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 213 (419)
++|.-+ ...-.||.|+++..+..-+.. ..-++..++|+||||.+-++. ...|+.+++.- ..|.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn--sqrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN--SQRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcchh-HHHHHHHhccc--hhhe
Confidence 455321 111257888888766532211 112357899999999986533 33356665542 3556
Q ss_pred EEEeeec
Q psy2764 214 VMLSATV 220 (419)
Q Consensus 214 l~~SAT~ 220 (419)
++++.|+
T Consensus 769 LLLtgTP 775 (1958)
T KOG0391|consen 769 LLLTGTP 775 (1958)
T ss_pred eeecCCc
Confidence 8888885
No 191
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0014 Score=62.31 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHh----cCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEE
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQ----NHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVM 161 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~----~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~ 161 (419)
+..+++++|||+|||+++.-....+. ..+.++.++. +.|.-+.++...+....+ +.+ .++-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv------------~~~~ 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPV------------KAIE 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cce------------EeeC
Confidence 45789999999999998665544432 2345555544 334545444444333211 001 1223
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCC-CcEEEEeeecC
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKE-VCIVMLSATVP 221 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~-~~~l~~SAT~~ 221 (419)
+++.+...+.. +.+.++|+||++.+..... .-..+..++...... -.++.+|||..
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 45555544432 3578999999999875321 112333444444333 45788999985
No 192
>KOG1805|consensus
Probab=97.58 E-value=0.00025 Score=72.31 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHh-cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEec----
Q psy2764 74 LDVFQKQAIIKLE-EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG---- 148 (419)
Q Consensus 74 ~~~~Q~~ai~~~~-~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g---- 148 (419)
++.-|++|+..++ .....+|.|-+|+|||.....+|..+...+++||+.+=|..-++.+.-+++...-.+--+..
T Consensus 670 LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ki 749 (1100)
T KOG1805|consen 670 LNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKI 749 (1100)
T ss_pred cCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCcccc
Confidence 6889999998864 55567888999999999877888888889999999999999999999999886544211111
Q ss_pred -----------cce---------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 149 -----------DFQ---------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 149 -----------~~~---------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+.+ .-.+..|+.||---+.+-+ ...+.+++.|||||-.+.
T Consensus 750 h~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 750 HPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred chHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 110 1134677777742222211 134568999999999764
No 193
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.57 E-value=0.0011 Score=75.63 Aligned_cols=137 Identities=12% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCCccHHHHHHHHHHhc--CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEec
Q psy2764 71 PFELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG 148 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~--~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g 148 (419)
+|.+++-|.+|+..++. ++-.+++++.|+|||.+.-.+...+...+.+++.++||-.-+....+........+.-+.+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti~~~l~ 506 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWVK 506 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchhhhHHHHHH
Confidence 35689999999998865 4799999999999998755555566677899999999998777666543211100000000
Q ss_pred cceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeee
Q psy2764 149 DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSAT 219 (419)
Q Consensus 149 ~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT 219 (419)
.. . ......|...+. .....+..-++|||||+-++.. ..+..++... +.+.+++++.=+
T Consensus 507 ~l---~-~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 507 NL---F-NDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSKLILLNDS 566 (1960)
T ss_pred hh---c-ccccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCEEEEEcCh
Confidence 00 0 000112222222 2223345678999999998853 3466666655 467888887644
No 194
>KOG2340|consensus
Probab=97.56 E-value=0.00033 Score=66.79 Aligned_cols=133 Identities=15% Similarity=0.177 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCC-CCCh---hHHHHHHHHHHhc------------------------------CCCeE
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHT-SAGK---TVIAEYAIALSQN------------------------------HKTRT 119 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apT-GsGK---T~~~~~~i~~~~~------------------------------~~~~~ 119 (419)
+|+.|.+.+..+.+-+|++..-.| +.|+ ++.++-++.++.+ ..++|
T Consensus 217 ltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkV 296 (698)
T KOG2340|consen 217 LTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKV 296 (698)
T ss_pred chHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceE
Confidence 799999999999888887653322 2344 2222233332210 25899
Q ss_pred EEEcccHHHHHHHHHHHHHhccc--------------cceEec---------------------ccee------------
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD--------------VGLVTG---------------------DFQI------------ 152 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~--------------~~~~~g---------------------~~~~------------ 152 (419)
||+||+|+-|-.+.+.+..++.+ -+-+.| ++.-
T Consensus 297 LivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkKt 376 (698)
T KOG2340|consen 297 LIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKKT 376 (698)
T ss_pred EEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHHH
Confidence 99999999999999999887322 111222 1110
Q ss_pred ------cCCCcEEEEcHHHHHHHHhc------CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 153 ------NTTASCLVMTTEILRSMLYR------GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 153 ------~~~~~Iiv~Tp~~l~~~~~~------~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
-.++||+||+|--|...+.. ...++..+.++|||-+|.++.+.+.. +..++..+
T Consensus 377 ikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHL 442 (698)
T KOG2340|consen 377 IKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHL 442 (698)
T ss_pred HHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHh
Confidence 01289999999777655552 22468889999999999887655443 34444443
No 195
>KOG1131|consensus
Probab=97.55 E-value=0.00084 Score=64.04 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=50.1
Q ss_pred cCCCC-ccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHh----cCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 69 TWPFE-LDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQ----NHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 69 ~~~~~-~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~----~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
-|||. .+|-|-+-...+ -.+.+.++-+|+|+|||.+.+-.+...+ ....+.++..-|..=++.....++.+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 45666 688888766444 4678999999999999987555544332 23567888887777666666666655
Q ss_pred c
Q psy2764 140 F 140 (419)
Q Consensus 140 ~ 140 (419)
.
T Consensus 91 ~ 91 (755)
T KOG1131|consen 91 M 91 (755)
T ss_pred H
Confidence 3
No 196
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.55 E-value=5.9e-06 Score=59.82 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=54.8
Q ss_pred HHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 345 ANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 345 ~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
++|...++.....++.+ ..+|++++++|+++.. .+|+||+++++|||+|.+++ +.....+++...+-|+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~----~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI----RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS----SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc----eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 35677788877766544 7889999999999999 99999999999999987664 4566677776666554
No 197
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.55 E-value=0.0003 Score=70.88 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=76.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHH---HHhc-c----c--cceEecc-------
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDF---RETF-Q----D--VGLVTGD------- 149 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~---~~~~-~----~--~~~~~g~------- 149 (419)
-++=|.+.||+|||.||+-.|..+.+ .-.+-||+|||.+.-.-++... ...| + + ...+.-+
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 47889999999999998888876654 3467899999999866543333 2333 1 1 1112111
Q ss_pred ceecCCCcEEEEcHHHHHH------HHhcCCCCCCC--------------c-cEEEEeCCcccCCCcchHHHHHHHHhcC
Q psy2764 150 FQINTTASCLVMTTEILRS------MLYRGSDVLRD--------------L-EYVIFDEVHYINDSERGHVWEEVLILLP 208 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~------~~~~~~~~l~~--------------~-~~lIiDE~h~l~~~~~~~~~~~i~~~~~ 208 (419)
...+..+.+++.|...+.. ++........+ + -++|+||=|++... ...+..+....
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l~- 231 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQLN- 231 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhhC-
Confidence 1223346677777654432 12111111111 1 27999999998652 33333333322
Q ss_pred CCCcEEEEeeecCChH
Q psy2764 209 KEVCIVMLSATVPNTL 224 (419)
Q Consensus 209 ~~~~~l~~SAT~~~~~ 224 (419)
..-++-++||.+...
T Consensus 232 -pl~ilRfgATfkd~y 246 (985)
T COG3587 232 -PLLILRFGATFKDEY 246 (985)
T ss_pred -ceEEEEecccchhhh
Confidence 244678999987543
No 198
>PRK09183 transposase/IS protein; Provisional
Probab=97.54 E-value=0.0017 Score=58.76 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=43.1
Q ss_pred cccccccccCCCCccHHHHHHHHH---HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHH
Q psy2764 61 AKVPIMAHTWPFELDVFQKQAIIK---LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 132 (419)
Q Consensus 61 ~~l~~~~~~~~~~~~~~Q~~ai~~---~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~ 132 (419)
+.+..+.|.+.-.+..-|...+.. +..+.++++.||+|+|||..+..........+.+++++. ..+|..++
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQL 145 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHHH
Confidence 334444444432334445444433 467899999999999999765554444445677777653 44555544
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0041 Score=58.66 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc--cH-HHHHHHHHHHHHhccccceEeccceecCCCcEE-EEcHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP--IK-ALSNQKYRDFRETFQDVGLVTGDFQINTTASCL-VMTTE 164 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P--t~-~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Ii-v~Tp~ 164 (419)
+.+.+++|||+|||+.+..+...+...+.++.++.. .| +.+.|+....... +.+++ +.+|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l---------------gipv~v~~d~~ 306 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI---------------GFEVIAVRDEA 306 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc---------------CCcEEecCCHH
Confidence 578999999999998866655556666666666553 33 3444444322221 12333 34677
Q ss_pred HHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHH---hcCCCCcEEEEeeecCC
Q psy2764 165 ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLI---LLPKEVCIVMLSATVPN 222 (419)
Q Consensus 165 ~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~---~~~~~~~~l~~SAT~~~ 222 (419)
.+...+..... -.+.++|+||-+-+... ....+..+.+ ...+..-++.+|||...
T Consensus 307 ~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 307 AMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred HHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 77655533111 12579999999987542 2233444433 33334446778998643
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.49 E-value=0.00079 Score=61.77 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCCC-ccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHHHHHH---HhcCCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy2764 70 WPFE-LDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIAL---SQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143 (419)
Q Consensus 70 ~~~~-~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~~i~~---~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~ 143 (419)
++.+ .+-.|.-|+..++.. .-|.+.++-|||||+.++.+.+. ..+...++|+.-|+..+.++ +
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~d-----------I 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGED-----------I 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccc-----------c
Confidence 3444 366788889988654 56788999999999877665442 23456778888888776433 3
Q ss_pred ceEeccceecCC-------------CcEEEEcHHHHHHHHhcCCCCCCC----------ccEEEEeCCcccCCCcchHHH
Q psy2764 144 GLVTGDFQINTT-------------ASCLVMTTEILRSMLYRGSDVLRD----------LEYVIFDEVHYINDSERGHVW 200 (419)
Q Consensus 144 ~~~~g~~~~~~~-------------~~Iiv~Tp~~l~~~~~~~~~~l~~----------~~~lIiDE~h~l~~~~~~~~~ 200 (419)
|.+.|....+-. ...==++.+.+...+.+....+.. =.++|||||+.+.. ..+
T Consensus 293 GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp----hei 368 (436)
T COG1875 293 GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP----HEL 368 (436)
T ss_pred CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH----HHH
Confidence 444443211100 000012233444444433222111 24899999998843 568
Q ss_pred HHHHHhcCCCCcEEEEe
Q psy2764 201 EEVLILLPKEVCIVMLS 217 (419)
Q Consensus 201 ~~i~~~~~~~~~~l~~S 217 (419)
..++.+.+++.+++++.
T Consensus 369 kTiltR~G~GsKIVl~g 385 (436)
T COG1875 369 KTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHhccCCCEEEEcC
Confidence 88999999999988753
No 201
>PHA02533 17 large terminase protein; Provisional
Probab=97.48 E-value=0.00079 Score=66.96 Aligned_cols=142 Identities=11% Similarity=0.179 Sum_probs=88.4
Q ss_pred cCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH--HHhcCCCeEEEEcccHHHHHHHHHHHHHhcccc---
Q psy2764 69 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV--- 143 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~--~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~--- 143 (419)
..||.|.|+|...+..+..++-.++..+=..|||.+....+. .+..++..+++++|++.-+..+++.++.+....
T Consensus 55 ~~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 55 TIKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred ceecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 458889999999998876677778999999999987553332 334667899999999999999999888765431
Q ss_pred ---ceEe-cc--ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC--CCcEEE
Q psy2764 144 ---GLVT-GD--FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK--EVCIVM 215 (419)
Q Consensus 144 ---~~~~-g~--~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~--~~~~l~ 215 (419)
++.. .. .....++.|.+.|.+ .....-.+..++|+||+|.+.+ ....+..+...+.. ..+++.
T Consensus 135 ~~~~i~~~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~ii 205 (534)
T PHA02533 135 LQPGIVEWNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKIII 205 (534)
T ss_pred hhcceeecCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEEE
Confidence 1111 11 112334445444321 0111122567899999998754 23344444433332 234444
Q ss_pred Eeee
Q psy2764 216 LSAT 219 (419)
Q Consensus 216 ~SAT 219 (419)
.|..
T Consensus 206 iSTp 209 (534)
T PHA02533 206 TSTP 209 (534)
T ss_pred EECC
Confidence 4443
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=97.48 E-value=0.00079 Score=59.96 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=55.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRS 168 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~ 168 (419)
..+++.||+|+|||-.+..+...+...+.+++++. ..++... ...+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~~-------------------------------~~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLDR-------------------------------GPELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHhh-------------------------------hHHHHH
Confidence 56889999999999653333333344567777765 3444321 011211
Q ss_pred HHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 169 MLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 169 ~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
.+.+++++|+|++|.+... .....+-.+++.+..+...+++|++.+
T Consensus 94 -------~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 94 -------NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred -------hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 2345689999999977432 234445556655554344566677654
No 203
>PRK08727 hypothetical protein; Validated
Probab=97.47 E-value=0.00088 Score=59.65 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
..+++.||+|+|||..+......+...+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46999999999999765544445555677777764
No 204
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.0032 Score=58.77 Aligned_cols=122 Identities=9% Similarity=0.060 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc---HHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI---KALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt---~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
.-+++.+++|+|||+...-....+...+.+++++..- ..-+.|+......+.-.+ ..+... ..|..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v--~~~~~g---------~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV--IKHKYG---------ADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCce--ecccCC---------CCHHH
Confidence 4688999999999987665555566666777776532 344455544444432211 111110 01222
Q ss_pred -HHHHHhcCCCCCCCccEEEEeCCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 166 -LRSMLYRGSDVLRDLEYVIFDEVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 166 -l~~~~~~~~~~l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
+...+... ...+.++|++|.+.++.. ...-..+..+.+.+.+...++.++||..+.
T Consensus 210 v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 210 VAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred HHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 11211111 123568999999998752 234455566666666777788899987543
No 205
>PRK12377 putative replication protein; Provisional
Probab=97.43 E-value=0.0022 Score=57.27 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=48.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
..++++.||+|+|||..+......+...+..+++ ++..+|..++...+.. + .+...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~-i~~~~l~~~l~~~~~~---------~------------~~~~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV-VTVPDVMSRLHESYDN---------G------------QSGEKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE-EEHHHHHHHHHHHHhc---------c------------chHHHHH
Confidence 4689999999999997655555555566666654 4566777766554421 0 0111222
Q ss_pred HHHhcCCCCCCCccEEEEeCCccc
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l 191 (419)
. .+.++++|||||++..
T Consensus 159 ~-------~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 159 Q-------ELCKVDLLVLDEIGIQ 175 (248)
T ss_pred H-------HhcCCCEEEEcCCCCC
Confidence 1 3567899999999754
No 206
>PRK06921 hypothetical protein; Provisional
Probab=97.41 E-value=0.0014 Score=59.40 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=31.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~ 134 (419)
.+.++++.||+|+|||..+......+... +..++++. ..++..++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~l~~ 163 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGDLKD 163 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHHHHH
Confidence 46789999999999997654444455555 66666654 4555555433
No 207
>KOG0386|consensus
Probab=97.41 E-value=0.00015 Score=74.10 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=91.0
Q ss_pred CccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCCeEEEEcccHHHHHHHHHHHHHhccccce
Q psy2764 73 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 145 (419)
Q Consensus 73 ~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~ 145 (419)
++.+||.+-+..+ ..+-|.|+.-.+|-|||..-+-.|..+ .+....-+||+|+-.|.+ |...|.++.+.+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccceee
Confidence 5789999888765 456799999999999997644444322 233445788899988754 67778888777655
Q ss_pred Eeccce-----------ecCCCcEEEEcHHHHHHHHhcCCCCCCC--ccEEEEeCCcccCCCcchHHHHHHHHhcCCCCc
Q psy2764 146 VTGDFQ-----------INTTASCLVMTTEILRSMLYRGSDVLRD--LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC 212 (419)
Q Consensus 146 ~~g~~~-----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~--~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~ 212 (419)
+.+..+ .....+|+++|++.+.. .+..|.. ..++||||.|+|-+. - ..+...+..-.....
T Consensus 473 i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa-~-~KLt~~L~t~y~~q~ 546 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA-I-CKLTDTLNTHYRAQR 546 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch-h-hHHHHHhhccccchh
Confidence 444322 12358999999997753 2223333 458999999998642 1 222222221122344
Q ss_pred EEEEeeec
Q psy2764 213 IVMLSATV 220 (419)
Q Consensus 213 ~l~~SAT~ 220 (419)
.+++|+|+
T Consensus 547 RLLLTGTP 554 (1157)
T KOG0386|consen 547 RLLLTGTP 554 (1157)
T ss_pred hhhhcCCh
Confidence 57778775
No 208
>KOG0921|consensus
Probab=97.39 E-value=0.00054 Score=69.30 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=96.8
Q ss_pred HHHHHhcCCcEEEEcCCCCChhHHHHHHHHH-Hhc----CCCeEEEEcccHHHHHHHHHHHHHhccc-cceEeccc----
Q psy2764 81 AIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQN----HKTRTIYTSPIKALSNQKYRDFRETFQD-VGLVTGDF---- 150 (419)
Q Consensus 81 ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~g~~---- 150 (419)
....+..+..+++-+.||+|||.-+.--|+. ... ....+.+..|++--+..+.+++.+--.. ++-..|-.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~ 465 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFD 465 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccc
Confidence 3445567889999999999999875544442 222 2356888889999999999888764332 32222211
Q ss_pred e--ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh---cCCCCcEEEEeeecCChHH
Q psy2764 151 Q--INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL---LPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 151 ~--~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~---~~~~~~~l~~SAT~~~~~~ 225 (419)
+ .....-|..||-+-+++++... +..+.++|+||.|.... -...+..+++- ..+...++++|||+ +...
T Consensus 466 Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv--~~dfll~~lr~m~~ty~dl~v~lmsatI-dTd~ 539 (1282)
T KOG0921|consen 466 SATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDV--DTDFVLIVLREMISTYRDLRVVLMSATI-DTDL 539 (1282)
T ss_pred ccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhcc--chHHHHHHHHhhhccchhhhhhhhhccc-chhh
Confidence 1 1123468899999998877654 55788999999996532 22333333332 23578889999998 4555
Q ss_pred HHHHhcCcC
Q psy2764 226 FADWVGNTK 234 (419)
Q Consensus 226 ~~~~l~~~~ 234 (419)
+..+++...
T Consensus 540 f~~~f~~~p 548 (1282)
T KOG0921|consen 540 FTNFFSSIP 548 (1282)
T ss_pred hhhhhcccc
Confidence 666666643
No 209
>PRK06893 DNA replication initiation factor; Validated
Probab=97.34 E-value=0.0011 Score=58.98 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=54.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
+..+++.||+|+|||..+......+...+.+++++.-... ... +++.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--~~~-----------------------------~~~~~~ 87 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--QYF-----------------------------SPAVLE 87 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--hhh-----------------------------hHHHHh
Confidence 3457999999999997654444455555667766653210 000 011111
Q ss_pred HHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcC-CCCcEEEEeeecC
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLP-KEVCIVMLSATVP 221 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~-~~~~~l~~SAT~~ 221 (419)
.+.+.+++++||+|.+... .....+..++.... .+.+++++|++.+
T Consensus 88 --------~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 88 --------NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred --------hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 2346789999999987532 22333444444443 3456677777754
No 210
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.003 Score=57.41 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=30.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~ 136 (419)
..+++.|++|+|||..+......+...+..++++ +..++..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHH
Confidence 3499999999999976555455555556666554 4556665554443
No 211
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0016 Score=58.60 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=60.2
Q ss_pred cHHHHHHHHHH-------hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEe
Q psy2764 75 DVFQKQAIIKL-------EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVT 147 (419)
Q Consensus 75 ~~~Q~~ai~~~-------~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~ 147 (419)
...++.++..+ .++.++++.||+|+|||..+......+.+.+.+++ .+++.+|+.++...+..-
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~-f~~~~el~~~Lk~~~~~~-------- 155 (254)
T COG1484 85 PGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVL-FITAPDLLSKLKAAFDEG-------- 155 (254)
T ss_pred cchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEEHHHHHHHHHHHHhcC--------
Confidence 44555555433 36789999999999999776555555554455554 467889988887776430
Q ss_pred ccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 148 GDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 148 g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
...+.|.. .+.+++++||||.-....
T Consensus 156 -------------~~~~~l~~-------~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 156 -------------RLEEKLLR-------ELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred -------------chHHHHHH-------HhhcCCEEEEecccCccC
Confidence 01233432 256789999999997543
No 212
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.30 E-value=0.00052 Score=58.81 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=37.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
+++.||+|+|||..+.-.+....+.+.+++++. +.+...++.+++..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 689999999999876655555567788888886 4567788888777664
No 213
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.29 E-value=0.00034 Score=72.65 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=81.4
Q ss_pred ccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc---
Q psy2764 66 MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--- 142 (419)
Q Consensus 66 ~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--- 142 (419)
.|....|.++|+=.|.+-.+.-+.--|+.+.||=|||+++.+++..-.-.|..|-||..+--||.-=.+.+..++.-
T Consensus 160 ~g~~~~W~m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGL 239 (1112)
T PRK12901 160 GGNEITWDMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGL 239 (1112)
T ss_pred ccccccCCCcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCC
Confidence 34444566566666666655445566889999999999998887755556677778888888887666666555544
Q ss_pred -cceEec-cceec-----CCCcEEEEcHHHH-----HHHHhc--CCCCCCCccEEEEeCCccc
Q psy2764 143 -VGLVTG-DFQIN-----TTASCLVMTTEIL-----RSMLYR--GSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 143 -~~~~~g-~~~~~-----~~~~Iiv~Tp~~l-----~~~~~~--~~~~l~~~~~lIiDE~h~l 191 (419)
+|+... +.... -.+||+++|..-+ .+.+.. .....+.+.+.||||+|.+
T Consensus 240 svg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred ceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 444332 21111 2489999997533 222211 1223466889999999965
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.01 Score=57.64 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT 163 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp 163 (419)
++.+++++|||+|||+...-.+..+. ..+.++.++. |.|.-+.++...+.+..+ + +-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~---v----------p~~~~~~~ 287 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG---I----------PVEVVYDP 287 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC---C----------ceEccCCH
Confidence 56889999999999987665544443 4556666554 233323333333222211 0 11223455
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhc-CCCCcEEEEeeecCC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILL-PKEVCIVMLSATVPN 222 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~-~~~~~~l~~SAT~~~ 222 (419)
+.+...+.. +.+.++|+||.+-+.... .....+..++... .+....+.+|||...
T Consensus 288 ~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 288 KELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred HhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 555555532 346899999999764321 1223344444421 123447788998753
No 215
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0019 Score=60.23 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=58.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRS 168 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~ 168 (419)
.+.|+.+|+|+|||.++.+..... +....-+..+.+=+.++.+.+++.- .
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gvkdlr~i~e~a~---------------------------~ 98 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGVKDLREIIEEAR---------------------------K 98 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccccHHHHHHHHHHHH---------------------------H
Confidence 489999999999998765544333 4445555566555555555554421 0
Q ss_pred HHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 169 MLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 169 ~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
.... .+=-++++||+|++...+ -+.++-.+. +-.+++..||-.|+.
T Consensus 99 ~~~~-----gr~tiLflDEIHRfnK~Q----QD~lLp~vE-~G~iilIGATTENPs 144 (436)
T COG2256 99 NRLL-----GRRTILFLDEIHRFNKAQ----QDALLPHVE-NGTIILIGATTENPS 144 (436)
T ss_pred HHhc-----CCceEEEEehhhhcChhh----hhhhhhhhc-CCeEEEEeccCCCCC
Confidence 1111 122479999999985422 223333443 677889999977653
No 216
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.26 E-value=0.0028 Score=59.84 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=21.0
Q ss_pred HhcCC--cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 85 LEEHN--HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 85 ~~~~~--~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
+..+. ++++.||+|+|||..+......+.
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444 899999999999987655544443
No 217
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.25 E-value=0.0019 Score=57.15 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.+.++++.||+|+|||..+..........+..++++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 457899999999999987655544444444445443
No 218
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.24 E-value=0.0021 Score=57.04 Aligned_cols=38 Identities=8% Similarity=0.180 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.+..+++.||+|+|||..+..........+..++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34689999999999997654444444445556666553
No 219
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.24 E-value=0.0032 Score=57.44 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=26.1
Q ss_pred cHHHHHHHHHH----hc-CCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 75 DVFQKQAIIKL----EE-HNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 75 ~~~Q~~ai~~~----~~-~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
++.+.+++..+ .. ...+++.||+|+|||+.+-.....
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 66777777665 23 336899999999999875544333
No 220
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.22 E-value=0.013 Score=55.13 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=71.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEc-c-cHHHHHHHHHHHHHhccccceEeccceecCCCc-EEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTS-P-IKALSNQKYRDFRETFQDVGLVTGDFQINTTAS-CLVM 161 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~-P-t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~-Iiv~ 161 (419)
+++.+.++||||.|||+..+-+.... .....++-+|. - .|-=|.++.....+.. +.+ .++-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im--------------~vp~~vv~ 267 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM--------------GVPLEVVY 267 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh--------------CCceEEec
Confidence 37899999999999998754433322 34445544444 2 3333433333333322 123 4556
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCccc-CCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHH
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYI-NDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFAD 228 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l-~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 228 (419)
+|.-|...+. .++++++|.||=+-+= .|......+..++....+---.+.+|||.. ..++.+
T Consensus 268 ~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlke 330 (407)
T COG1419 268 SPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKE 330 (407)
T ss_pred CHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHH
Confidence 6777765553 4677899999998853 222334445555554433444678899974 444444
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.21 E-value=0.0052 Score=57.36 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=39.9
Q ss_pred ccHHHHHHHHHH----h----cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2764 74 LDVFQKQAIIKL----E----EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 74 ~~~~Q~~ai~~~----~----~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
++..+.+++... . .+.++++.||||+|||..+......+...+..|+++ +..+|..+...
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~l~~ 228 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEILRE 228 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHHHHH
Confidence 355555555432 1 468999999999999976555555666677777665 45666665543
No 222
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.20 E-value=0.0019 Score=57.61 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.+..+++.||+|+|||..+..........+.+++++.-
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 34689999999999997654444444455677777654
No 223
>KOG0989|consensus
Probab=97.18 E-value=0.0017 Score=58.25 Aligned_cols=46 Identities=7% Similarity=0.156 Sum_probs=31.6
Q ss_pred CCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 175 DVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 175 ~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
...+.++.+|+||||.|... -...+++.+...+...++++.+--++
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 45667799999999988653 33445666666666777777765543
No 224
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0018 Score=61.11 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=62.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh-cCC-CeEEEEcc--cHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ-NHK-TRTIYTSP--IKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMT 162 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~-~~~lii~P--t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~T 162 (419)
.+..+++++|||+|||+...-...... ..+ .++.++.. .|.-+.++...+.+..+ + +-..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g---v----------~~~~~~~ 202 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG---V----------PVHAVKD 202 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC---C----------ceEecCC
Confidence 477999999999999987655544432 333 45554431 12223333433333321 1 1122334
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc----CCCCcEEEEeeecCChH
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL----PKEVCIVMLSATVPNTL 224 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~ 224 (419)
++.+...+. .+.+.++++||++-... +...+...+..+ ...-.++.+|||.....
T Consensus 203 ~~~l~~~l~----~l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 203 GGDLQLALA----ELRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred cccHHHHHH----HhcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 444433332 24567899999998542 222233333333 22344788899985443
No 225
>KOG1133|consensus
Probab=97.13 E-value=0.0007 Score=66.73 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=37.7
Q ss_pred ccccCCCCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 66 MAHTWPFELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 66 ~~~~~~~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
..|.+||+|+.+|.+.+..+ ..|+-.|..+|||+|||+..+.+.+
T Consensus 8 ~~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 8 IEFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred cccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 35678999999999988664 6899999999999999998665544
No 226
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.09 E-value=0.0023 Score=66.02 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
|++-|++|+.. ....++|.|..|||||.+...-+..+.. ...++|+++.|+..|.++.+++.+..+.-
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 68999999875 4578999999999999886666665543 24689999999999999999998875420
Q ss_pred ceecCCCcEEEEcHHHHHHH
Q psy2764 150 FQINTTASCLVMTTEILRSM 169 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~ 169 (419)
....+.|+|...+...
T Consensus 75 ----~~~~v~i~TfHS~~~~ 90 (672)
T PRK10919 75 ----EARGLMISTFHTLGLD 90 (672)
T ss_pred ----cccCcEEEcHHHHHHH
Confidence 1134678888776643
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.09 E-value=0.0037 Score=51.92 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 129 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~ 129 (419)
+++.||+|+|||..+...+......+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 689999999999876655555555678888887654443
No 228
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.09 E-value=0.0031 Score=54.36 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=67.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
-+++++|||+|||+...-....+..++.++.+++ ..|.=+.++.+.+.+..+ +.++..... -.|..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~---------~~~~~~~ 72 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTE---------SDPAEIA 72 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTT---------SCHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcc---------hhhHHHH
Confidence 5789999999999986655555544466666665 345555555555544432 111110000 0132222
Q ss_pred -HHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 168 -SMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 168 -~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
..+... .-++.++|+||-+.+.... .....+..++....+.--.+.+|||.....
T Consensus 73 ~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 73 REALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp HHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred HHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 222211 1245789999999865321 234456666666665666788999986543
No 229
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.08 E-value=0.0054 Score=67.74 Aligned_cols=122 Identities=13% Similarity=0.060 Sum_probs=77.1
Q ss_pred CccHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHH----hcCCCeEEEEcccHHHHHHHHHHHHHhccccceE
Q psy2764 73 ELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALS----QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLV 146 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~----~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~ 146 (419)
.|++-|++|+..++ .++.+++++..|+|||.+.-..+..+ ...+.+++.++||-.-+..+.+. . +
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~----G----i- 905 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA----G----V- 905 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHh----C----c-
Confidence 47999999999987 45899999999999997643332221 23567899999998877766421 1 0
Q ss_pred eccceecCCCcEEEEcHHHHHHHH----hcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC-CCcEEEEeee
Q psy2764 147 TGDFQINTTASCLVMTTEILRSML----YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-EVCIVMLSAT 219 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~----~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~-~~~~l~~SAT 219 (419)
--.|..+|+... ..........++|||||+-++.. ..+..++..++. +.++|++.=+
T Consensus 906 ------------~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~----~~m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 906 ------------DAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred ------------hHhhHHHHhccccchhhcccCCCCCCcEEEEEccccccH----HHHHHHHHhhhhCCCEEEEEcch
Confidence 012333332210 01111223468999999998854 345555555553 5788887644
No 230
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.06 E-value=0.0035 Score=64.46 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=60.4
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEec
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG 148 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g 148 (419)
.|++-|++|+.. ...+++|.|..|||||.+...-+..+.. .+.++++++.|+..|..+.+++....+.
T Consensus 196 ~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~------ 267 (684)
T PRK11054 196 PLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT------ 267 (684)
T ss_pred CCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC------
Confidence 389999999864 4467899999999999886555443332 4568999999999999999999876531
Q ss_pred cceecCCCcEEEEcHHHHH
Q psy2764 149 DFQINTTASCLVMTTEILR 167 (419)
Q Consensus 149 ~~~~~~~~~Iiv~Tp~~l~ 167 (419)
..|-|+|...+.
T Consensus 268 -------~~v~v~TFHSla 279 (684)
T PRK11054 268 -------EDITARTFHALA 279 (684)
T ss_pred -------CCcEEEeHHHHH
Confidence 245566666554
No 231
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.05 E-value=0.0048 Score=60.77 Aligned_cols=101 Identities=16% Similarity=0.288 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++.||+|+|||..+......+... +.+++++ +..++..+....+..- +.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~----------------------~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNN----------------------TMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcC----------------------cHHHH
Confidence 468999999999997654444444333 5566666 4556666554444210 12233
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhc-CCCCcEEEEeeec
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL-PKEVCIVMLSATV 220 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~ 220 (419)
.. .+..+++|+|||+|.+.... ....+-.++..+ ..+.++ +++++.
T Consensus 206 ~~-------~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~i-iits~~ 253 (450)
T PRK00149 206 KE-------KYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQI-VLTSDR 253 (450)
T ss_pred HH-------HHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcE-EEECCC
Confidence 22 23367899999999875422 122233333333 234554 445554
No 232
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.01 Score=47.29 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
+++.||.|+|||..+-..+..+ +..++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence 5899999999997654444443 3444444443
No 233
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.03 E-value=0.014 Score=59.60 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=81.3
Q ss_pred cHHHHHHHHHH---h--cCCcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEcccHHHHHHHHHHHHHhccccceEe
Q psy2764 75 DVFQKQAIIKL---E--EHNHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSNQKYRDFRETFQDVGLVT 147 (419)
Q Consensus 75 ~~~Q~~ai~~~---~--~~~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~ 147 (419)
|+-|.+++..+ . ..+-+++.|.-|=|||.++=+++..+.+. ..+++|.+|+.+-+...++.+.+-+...|.-.
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~ 292 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKR 292 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcc
Confidence 55566666554 2 33489999999999996543333333333 45999999999999888887776554433211
Q ss_pred -------ccceec--CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEee
Q psy2764 148 -------GDFQIN--TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSA 218 (419)
Q Consensus 148 -------g~~~~~--~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SA 218 (419)
|.+... ....|=+..|.... ..-+++|||||=.+. -+.+..++... +.++||.
T Consensus 293 ~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~~----~rv~~sT 354 (758)
T COG1444 293 KVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRRF----PRVLFST 354 (758)
T ss_pred ccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhhc----CceEEEe
Confidence 111111 12234455664431 226899999999763 34455554433 4589999
Q ss_pred ecCCh
Q psy2764 219 TVPNT 223 (419)
Q Consensus 219 T~~~~ 223 (419)
|+...
T Consensus 355 TIhGY 359 (758)
T COG1444 355 TIHGY 359 (758)
T ss_pred eeccc
Confidence 99654
No 234
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.01 E-value=0.0096 Score=66.70 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCccHHHHHHHHHHhc--CCcEEEEcCCCCChhHHHHHHHHHHh----cCCCeEEEEcccHHHHHHHHHHHHHhccccce
Q psy2764 72 FELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQ----NHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 145 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~--~~~~iv~apTGsGKT~~~~~~i~~~~----~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~ 145 (419)
+.+++-|++|+..++. ++.+++++..|+|||.+.-..+..+. ..+.+++.++||-.-+.++.+ . |+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~----Gi 1037 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----A----GV 1037 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----c----Cc
Confidence 3579999999999875 47999999999999976433333321 245679999999887766542 1 11
Q ss_pred EeccceecCCCcEEEEcHHHHHHHHh----cCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC-CCcEEEEeee
Q psy2764 146 VTGDFQINTTASCLVMTTEILRSMLY----RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-EVCIVMLSAT 219 (419)
Q Consensus 146 ~~g~~~~~~~~~Iiv~Tp~~l~~~~~----~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~-~~~~l~~SAT 219 (419)
=-.|..+++.... .+......-++|||||+-++.. ..+..++..++. +.++|++.=+
T Consensus 1038 -------------~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1038 -------------DAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVSSGDT 1099 (1747)
T ss_pred -------------chhhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhhhcCCCEEEEecch
Confidence 0124444432110 1111223458999999998854 335566666653 6788877644
No 235
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.93 E-value=0.0098 Score=68.17 Aligned_cols=121 Identities=21% Similarity=0.187 Sum_probs=75.7
Q ss_pred CCccHHHHHHHHHHhc--CCcEEEEcCCCCChhHHHHH---HH-HHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccce
Q psy2764 72 FELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEY---AI-ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 145 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~--~~~~iv~apTGsGKT~~~~~---~i-~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~ 145 (419)
+.+++.|++|+..++. ++.++|+++.|+|||.+..- ++ -.+...+.+++.++||-.-+.++.+ . |+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~----~----g~ 1089 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS----A----GV 1089 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh----c----CC
Confidence 4589999999999864 46788899999999976411 12 2334467889999999877766642 1 10
Q ss_pred EeccceecCCCcEEEEcHHHHHHHH--hcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEe
Q psy2764 146 VTGDFQINTTASCLVMTTEILRSML--YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLS 217 (419)
Q Consensus 146 ~~g~~~~~~~~~Iiv~Tp~~l~~~~--~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~S 217 (419)
. ..|..+++.-. ......+...+++||||+-++.. ..+..++.... .+.+++++.
T Consensus 1090 -----~--------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~~----~~~~~l~~~~~~~~ak~vlvG 1147 (1960)
T TIGR02760 1090 -----Q--------AQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVSN----FQLTHATELVQKSGSRAVSLG 1147 (1960)
T ss_pred -----c--------hHhHHHHhcCcccccccCCCCcccEEEEEccccccH----HHHHHHHHhccCCCCEEEEeC
Confidence 0 12333333100 01111244568999999998854 34555655543 457777664
No 236
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.0027 Score=61.84 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=80.4
Q ss_pred EEcCCCCChhHHHHHHHHHHhcCC-CeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccce-----------ecCC
Q psy2764 93 VTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQ-----------INTT 155 (419)
Q Consensus 93 v~apTGsGKT~~~~~~i~~~~~~~-~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~-----------~~~~ 155 (419)
..+.||||||++-+-+|+.+-.+| ..-|+.|.....++-+...+..-... -.+..++.. -+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 357899999998666677665554 55788888777777766655432111 111222211 2234
Q ss_pred CcEEEEcHHHHHHHHhcCCC------CCCCcc-EEEEeCCcccCCCcc---------hHHHHHHHH-hc--CCCCcEEEE
Q psy2764 156 ASCLVMTTEILRSMLYRGSD------VLRDLE-YVIFDEVHYINDSER---------GHVWEEVLI-LL--PKEVCIVML 216 (419)
Q Consensus 156 ~~Iiv~Tp~~l~~~~~~~~~------~l~~~~-~lIiDE~h~l~~~~~---------~~~~~~i~~-~~--~~~~~~l~~ 216 (419)
..|.++|.+.|.+.+.+... .+.+.. +++-||+|++....- ...++..+. .+ .++--++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 67999999999877765432 344444 457799999854321 112222221 12 235567889
Q ss_pred eeecCChHHHHH
Q psy2764 217 SATVPNTLEFAD 228 (419)
Q Consensus 217 SAT~~~~~~~~~ 228 (419)
|||++....+..
T Consensus 162 ~at~~k~k~v~~ 173 (812)
T COG3421 162 SATIPKEKSVED 173 (812)
T ss_pred hhcCCccccHHH
Confidence 999986555544
No 237
>KOG0388|consensus
Probab=96.93 E-value=0.0012 Score=65.21 Aligned_cols=139 Identities=16% Similarity=0.213 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhccccce-
Q psy2764 74 LDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQDVGL- 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~- 145 (419)
+-+||.+-+.-+ .+|-|.|+.-..|-|||.-.+..+..+.. --+.-|||+|.-.| ..|.+.+.++++...+
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP~~k~l 646 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLPSFKVL 646 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCccceee
Confidence 567888877654 58899999999999999876555554432 23557888998665 7788899999887433
Q ss_pred -Eeccce----------------ecCCCcEEEEcHHHHHH---HHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHH
Q psy2764 146 -VTGDFQ----------------INTTASCLVMTTEILRS---MLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLI 205 (419)
Q Consensus 146 -~~g~~~----------------~~~~~~Iiv~Tp~~l~~---~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~ 205 (419)
+.|+.+ .+...+|+|++++.+.. ++.. -+..++|+|||+.+-+ .....+..+++
T Consensus 647 pywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKS-SsS~RWKtLLs 720 (1185)
T KOG0388|consen 647 PYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKS-SSSSRWKTLLS 720 (1185)
T ss_pred cCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhh-hhhhHHHHHhh
Confidence 334321 22347899999876641 2211 1345899999998854 33344555555
Q ss_pred hcCCCCcEEEEeeecC
Q psy2764 206 LLPKEVCIVMLSATVP 221 (419)
Q Consensus 206 ~~~~~~~~l~~SAT~~ 221 (419)
.- .+-.+++|+|+-
T Consensus 721 F~--cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 721 FK--CRNRLLLTGTPI 734 (1185)
T ss_pred hh--ccceeeecCCcc
Confidence 42 344588898863
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.93 E-value=0.0086 Score=55.44 Aligned_cols=103 Identities=7% Similarity=0.106 Sum_probs=58.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
.++.+++.||+|+|||..+......+...+..++++. .-+|+.++...+.. .+....
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-~~~l~~~lk~~~~~----------------------~~~~~~ 211 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-FPEFIRELKNSISD----------------------GSVKEK 211 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-HHHHHHHHHHHHhc----------------------CcHHHH
Confidence 3568999999999999765555555556666666553 33566555444311 011222
Q ss_pred HHHHhcCCCCCCCccEEEEeCCccc--CCCcchHHHHHHHH-hcCCCCcEEEEeeec
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYI--NDSERGHVWEEVLI-LLPKEVCIVMLSATV 220 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l--~~~~~~~~~~~i~~-~~~~~~~~l~~SAT~ 220 (419)
.. .+.++++|||||...- .++.....+..|+. +......++ +|..+
T Consensus 212 l~-------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti-~TSNl 260 (306)
T PRK08939 212 ID-------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTF-FTSNF 260 (306)
T ss_pred HH-------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEE-EECCC
Confidence 21 2567899999999854 23333344555543 223344444 44444
No 239
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.92 E-value=0.006 Score=59.04 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEE
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYT 122 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii 122 (419)
.++++.||+|+|||.+.-..+..+... +..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 689999999999998755555444332 3445555
No 240
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.89 E-value=0.0047 Score=64.49 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
|++-|.+|+.. ....++|.|..|||||.+...-+..+.. ...++|+|+-|+..|.++.+++.++.+.-
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~------ 81 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS------ 81 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC------
Confidence 79999999875 4578999999999999886665665543 34689999999999999999999876420
Q ss_pred ceecCCCcEEEEcHHHHHHH
Q psy2764 150 FQINTTASCLVMTTEILRSM 169 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~ 169 (419)
...+.|+|...+...
T Consensus 82 -----~~~~~i~TfHs~~~~ 96 (721)
T PRK11773 82 -----QGGMWVGTFHGLAHR 96 (721)
T ss_pred -----CCCCEEEcHHHHHHH
Confidence 124567777766543
No 241
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.87 E-value=0.011 Score=52.52 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=39.4
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
..+..+++.+++|+|||+.+...+....+++.+++++. +.+-..+..+.+.++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 46789999999999999875555555556778888888 4445566666665543
No 242
>PRK04195 replication factor C large subunit; Provisional
Probab=96.83 E-value=0.0095 Score=59.18 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+.+++.||+|+|||..+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala 60 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALA 60 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5789999999999997654443
No 243
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.82 E-value=0.005 Score=64.35 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
|++-|.+|+.. ....++|.|..|||||.+...-+..+.. ...++|+++.|+..|.++.+++.++.+.
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~------- 75 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT------- 75 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc-------
Confidence 78999999865 4578999999999999886666665543 3468999999999999999999987642
Q ss_pred ceecCCCcEEEEcHHHHHHH
Q psy2764 150 FQINTTASCLVMTTEILRSM 169 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~ 169 (419)
....+.|+|...+...
T Consensus 76 ----~~~~~~i~TfHs~~~~ 91 (715)
T TIGR01075 76 ----SARGMWIGTFHGLAHR 91 (715)
T ss_pred ----cccCcEEEcHHHHHHH
Confidence 1124667887766543
No 244
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.82 E-value=0.011 Score=57.42 Aligned_cols=101 Identities=17% Similarity=0.294 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++.||+|+|||..+......+... +.+++++. ...+..+....+.. + +.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~~~~~~~~~~~~---------~-------------~~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEKFTNDFVNALRN---------N-------------KMEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHHHHHHHHHHHHc---------C-------------CHHHH
Confidence 357899999999997654443333332 56677764 34454444333321 0 12233
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhc-CCCCcEEEEeeec
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL-PKEVCIVMLSATV 220 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~ 220 (419)
... +.++++|+|||+|.+.... ....+-.++..+ ..+.+++ +|++.
T Consensus 194 ~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii-its~~ 241 (405)
T TIGR00362 194 KEK-------YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV-LTSDR 241 (405)
T ss_pred HHH-------HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE-EecCC
Confidence 322 2346899999999875432 122233333332 3345554 45553
No 245
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.81 E-value=0.021 Score=57.41 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=83.5
Q ss_pred ccHHHHHHHHHH---hcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhccccceE--e
Q psy2764 74 LDVFQKQAIIKL---EEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETFQDVGLV--T 147 (419)
Q Consensus 74 ~~~~Q~~ai~~~---~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~--~ 147 (419)
++|.-.+-|..+ .+.+-.++.+|-|.|||.+....+..+.. .+.+++|.+|...-+.++++++++.+...+.. .
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~f 249 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWF 249 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhcccccc
Confidence 466666666554 56778889999999999875544443333 57899999999999999999988877533210 0
Q ss_pred cc---ce-ec-CCCcEEEEcHHHHH----H--H--HhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcE
Q psy2764 148 GD---FQ-IN-TTASCLVMTTEILR----S--M--LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCI 213 (419)
Q Consensus 148 g~---~~-~~-~~~~Iiv~Tp~~l~----~--~--~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~ 213 (419)
+. .. .. .+-.|.+..|.-.. . + -..+...-...+++|+|||..+.. ..+..++-.+. .+.++
T Consensus 250 p~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~ 325 (752)
T PHA03333 250 PEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQ 325 (752)
T ss_pred CCCceEEEeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCce
Confidence 00 00 00 01112222211110 0 0 001112223578999999998865 34444554443 45666
Q ss_pred EEEeeec
Q psy2764 214 VMLSATV 220 (419)
Q Consensus 214 l~~SAT~ 220 (419)
+.+|.+-
T Consensus 326 IiISS~~ 332 (752)
T PHA03333 326 IHISSPV 332 (752)
T ss_pred EEEeCCC
Confidence 7777664
No 246
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.80 E-value=0.016 Score=59.88 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=57.8
Q ss_pred cHHHHHHHHHH-----h-cC-CcE-EEEcCCCCChhHHHHHHHHHHhc----C---CCeEEEEcccH-HHHHHHHHHHHH
Q psy2764 75 DVFQKQAIIKL-----E-EH-NHV-FVTAHTSAGKTVIAEYAIALSQN----H---KTRTIYTSPIK-ALSNQKYRDFRE 138 (419)
Q Consensus 75 ~~~Q~~ai~~~-----~-~~-~~~-iv~apTGsGKT~~~~~~i~~~~~----~---~~~~lii~Pt~-~L~~q~~~~~~~ 138 (419)
|+-|.+.+..+ . .+ .++ +|.|+||+|||.+.-..+-.+.. . ...+++|=-.. .-..+++..+.+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~q 839 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYK 839 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHH
Confidence 66666655432 2 12 244 59999999999886666544421 1 23455552211 112333333332
Q ss_pred hccccceEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh
Q psy2764 139 TFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206 (419)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~ 206 (419)
.+. +... .--..+-+.+..++.........+.+|||||+|.+... ....+..+++.
T Consensus 840 qL~------g~~P-----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 840 QLF------NKKP-----PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred HHc------CCCC-----CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 211 1110 00112223333333222122345679999999998753 33444445543
No 247
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.80 E-value=0.012 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
..++++.||+|+|||.++-.....
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999876555443
No 248
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.79 E-value=0.015 Score=51.14 Aligned_cols=105 Identities=17% Similarity=0.283 Sum_probs=59.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
.+++.||+|+|||-........+ ..++.+++++. ..+........+.. ...+.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~~~f~~~~~~~~~~----------------------~~~~~~~ 92 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-AEEFIREFADALRD----------------------GEIEEFK 92 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-HHHHHHHHHHHHHT----------------------TSHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-HHHHHHHHHHHHHc----------------------ccchhhh
Confidence 58999999999997422222222 23566777765 33555555544433 0122232
Q ss_pred HHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhc-CCCCcEEEEeeecCChH
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL-PKEVCIVMLSATVPNTL 224 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~ 224 (419)
+ .+...++++||++|.+.+.. ....+-.++..+ ..+.++++.|...|...
T Consensus 93 ~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 93 D-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp H-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred h-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 2 24578999999999986532 233344444433 34667777776766543
No 249
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.0099 Score=58.07 Aligned_cols=105 Identities=13% Similarity=0.261 Sum_probs=59.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRS 168 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~ 168 (419)
..+++.||+|+|||..+......+...+.+++++. ...+..+....+.. ...+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~~~f~~~~~~~l~~----------------------~~~~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-SELFTEHLVSAIRS----------------------GEMQRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-HHHHHHHHHHHHhc----------------------chHHHHHH
Confidence 45899999999999765544445555677787775 34555544433321 01122221
Q ss_pred HHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhc-CCCCcEEEEeeecCCh
Q psy2764 169 MLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL-PKEVCIVMLSATVPNT 223 (419)
Q Consensus 169 ~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~~~~ 223 (419)
.+..++++++||+|.+.... ....+..++..+ ..+.++++.|-+.|..
T Consensus 199 -------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 199 -------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred -------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 23467899999999875432 223333443332 2345655555444443
No 250
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.76 E-value=0.0018 Score=54.35 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=54.5
Q ss_pred EEEcCCCCChhHHHHHHHH--HHhcC-CCeEEEEcccHHHHHHHHHHHHHhccccceEeccc--------eecCCCcEEE
Q psy2764 92 FVTAHTSAGKTVIAEYAIA--LSQNH-KTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF--------QINTTASCLV 160 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~--~~~~~-~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~--------~~~~~~~Iiv 160 (419)
++.|+-|-|||.+ +++. .+... ..+++|.+|+.+=+...++.+.+.....+.-.... -......|-+
T Consensus 1 VltA~RGRGKSa~--lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAA--LGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHH--HHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B
T ss_pred CccCCCCCCHHHH--HHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEE
Confidence 5789999999955 5543 33333 35899999999999998888776554433221100 0112456777
Q ss_pred EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 161 MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 161 ~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
..|+.+... ....+++|||||=.+. -+.+..+ +.. ...+.||.|+...+
T Consensus 79 ~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~l---l~~-~~~vv~stTi~GYE 127 (177)
T PF05127_consen 79 VAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQL---LRR-FPRVVFSTTIHGYE 127 (177)
T ss_dssp --HHHHCCT-----------SCEEECTGGGS-----HHHHHHH---HCC-SSEEEEEEEBSSTT
T ss_pred ECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHH---Hhh-CCEEEEEeeccccc
Confidence 788777421 2245899999999773 2333333 333 33577788886543
No 251
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.76 E-value=0.05 Score=49.25 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=67.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc--c-HHHHHHHHHHHHHhccccceEeccceecCCCcEEE-Ec
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP--I-KALSNQKYRDFRETFQDVGLVTGDFQINTTASCLV-MT 162 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P--t-~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv-~T 162 (419)
.+..+.+.+|+|+|||..+......+...+.++.++.- . ...+.|+....... +.++.. .+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~---------------~~~~~~~~~ 138 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI---------------GFEVIAVRD 138 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhc---------------CceEEecCC
Confidence 45799999999999998765554454445556655553 2 24555555443322 122222 35
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
++.+...+..- ....+.+++|||-+-+.... ..-..+..++....+...++.+|||..
T Consensus 139 ~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 139 EAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred HHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 66555443221 11246799999999875321 222223344444444445778999974
No 252
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.71 E-value=0.0086 Score=62.19 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=64.1
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
|++-|++++.. ...+++|.|..|||||.+.+.-+..+.. ...++++|+.|+..+.++.+++.+..+.-
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 68899999865 4679999999999999886665655442 34779999999999999999998865421
Q ss_pred ceecCCCcEEEEcHHHHHHHH
Q psy2764 150 FQINTTASCLVMTTEILRSML 170 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~ 170 (419)
....+.|+|..++...+
T Consensus 74 ----~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 ----EARGLTISTFHTLGLDI 90 (664)
T ss_pred ----ccCCeEEEeHHHHHHHH
Confidence 12356777877765433
No 253
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0078 Score=57.10 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=54.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCe--EEEE-cccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTR--TIYT-SPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~--~lii-~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
.|+++-||||+|||.+.-+.+-.+...... +++| |....--.|++..+.+.+.. -+..-..+-+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~------------~p~~g~~~~~- 109 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK------------VPLTGDSSLE- 109 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC------------CCCCCCchHH-
Confidence 579999999999998877766655443222 2222 22222233444444433221 0111111222
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP 208 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~ 208 (419)
+...+..........-+||+||+|.+.+... ..+..+.+.-.
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~ 151 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPG 151 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhcc
Confidence 2222222212234556899999999976543 45555555443
No 254
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.69 E-value=0.0002 Score=51.94 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHh
Q psy2764 342 QNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQ 414 (419)
Q Consensus 342 ~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~ 414 (419)
.+++.|...++.....++.+ .++|.++++.|+++.. .++++|+++++|+|+|+++. +.....+++...+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~----~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI----KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC----eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 35566666666665555544 6778899999998888 99999999999999997664 3334444444444
Q ss_pred cC
Q psy2764 415 KG 416 (419)
Q Consensus 415 ~g 416 (419)
.|
T Consensus 78 ~~ 79 (82)
T smart00490 78 AG 79 (82)
T ss_pred cc
Confidence 33
No 255
>KOG2028|consensus
Probab=96.65 E-value=0.0036 Score=57.47 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=63.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRS 168 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~ 168 (419)
..+|+.+|.|+|||..+-+.+........+-+-+.-|.+-++++...+++.- ...
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq------------------------~~~- 217 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ------------------------NEK- 217 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH------------------------HHH-
Confidence 4899999999999987655555554555677777888887777776665521 111
Q ss_pred HHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 169 MLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 169 ~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
...++-.++.+||+|++...+ -..++-++ .+--+++..||-.|+.
T Consensus 218 ------~l~krkTilFiDEiHRFNksQ----QD~fLP~V-E~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 218 ------SLTKRKTILFIDEIHRFNKSQ----QDTFLPHV-ENGDITLIGATTENPS 262 (554)
T ss_pred ------hhhcceeEEEeHHhhhhhhhh----hhccccee-ccCceEEEecccCCCc
Confidence 122344589999999874322 11122222 2556778888876654
No 256
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.63 E-value=0.0062 Score=53.96 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=71.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHHhcccc---------ceEeccceecCCC
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRETFQDV---------GLVTGDFQINTTA 156 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~~~~~~~~~~---------~~~~g~~~~~~~~ 156 (419)
.|..+++.+|+|+|||..+.-.+.....+ +.+++++. +.+-..++.+.+..+.-++ .+........ ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~-~~ 95 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI-GW 95 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS-T-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc-cc
Confidence 56899999999999998765555555555 88888887 4566677777777664321 1111111100 00
Q ss_pred cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCC----cchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 157 SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDS----ERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 157 ~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~----~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
. -..++.+...+....... +.+.+|||-...+... ..+..+..+...+...-.+.++++..
T Consensus 96 ~--~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 96 S--PNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp T--SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 0 223444443332211111 2379999999876211 23445556666665555566677664
No 257
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.63 E-value=0.014 Score=56.52 Aligned_cols=120 Identities=12% Similarity=0.156 Sum_probs=64.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc--cHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH-
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP--IKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI- 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P--t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~- 165 (419)
..+++++++|+|||+++......+...+.+++++.. .|.-+.++...+....+ +.++ +... . ..|..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g-vp~~-~~~~---~-----~d~~~i 165 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG-VPFY-GDPD---N-----KDAVEI 165 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC-CcEE-ecCC---c-----cCHHHH
Confidence 478899999999999877666666666667776653 23333333333322211 1111 1100 0 11222
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
+...+.. +...++||||.+-+... ...-..+..+.+...+..-++.++||...
T Consensus 166 ~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 166 AKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred HHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 2233322 12238999999965432 12223344555555556667888888753
No 258
>CHL00181 cbbX CbbX; Provisional
Probab=96.61 E-value=0.012 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+.++++.||+|+|||.++-.....+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999998876654443
No 259
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.011 Score=57.81 Aligned_cols=105 Identities=14% Similarity=0.252 Sum_probs=57.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++.|++|+|||.........+. .++.+++++.+ .++..++...+.... ...+.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------~~~~~~ 200 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH--------------------KEIEQF 200 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------hHHHHH
Confidence 4588999999999965332222222 34567776554 667766666553310 011122
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcC-CCCcEEEEeeecC
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLP-KEVCIVMLSATVP 221 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~-~~~~~l~~SAT~~ 221 (419)
.. .+.++++||+||+|.+... .....+..++..+. .+.|+++.|-..|
T Consensus 201 ~~-------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 201 KN-------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HH-------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 11 2346789999999987532 22333444444433 3446555544444
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.58 E-value=0.038 Score=50.27 Aligned_cols=122 Identities=11% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
.+-+++.+|+|+|||+.+.-....+...+.+++++. +.|.-+.++...+.+..+ +.++..... . -|..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~----~-----dp~~ 141 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEG----A-----DPAA 141 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCC----C-----CHHH
Confidence 357888899999999987666666666677777776 345544444444433322 222222211 0 1222
Q ss_pred H-HHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcC------CCCcEEEEeeecC
Q psy2764 166 L-RSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLP------KEVCIVMLSATVP 221 (419)
Q Consensus 166 l-~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~------~~~~~l~~SAT~~ 221 (419)
. ...+.. ....+.+++|+|=+-+.... ..-..+..+.+... ..-.++.++||..
T Consensus 142 ~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 142 VAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred HHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 2 121111 11356899999999876422 22234445554444 4556788899864
No 261
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.57 E-value=0.018 Score=52.87 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcC-C-CeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNH-K-TRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT 163 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~-~-~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp 163 (419)
++.+++++|||+|||+...-.+..+... + .++.++. |.+.-+.++...+.... ++ + -..+.++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~---~~-----p-----~~~~~~~ 260 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKIL---GV-----P-----VKVARDP 260 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHh---CC-----c-----eeccCCH
Confidence 4578899999999998766555544433 3 5555554 22333333333332221 11 0 0122356
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
..+...+.. +.+.++|+||.+
T Consensus 261 ~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHH----ccCCCEEEEeCC
Confidence 666555543 345799999975
No 262
>PF13173 AAA_14: AAA domain
Probab=96.56 E-value=0.034 Score=44.33 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=24.5
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeee
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT 219 (419)
.-.++++||+|.+.+ +...+..+...- .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999998853 555555555543 35666654433
No 263
>PLN03025 replication factor C subunit; Provisional
Probab=96.56 E-value=0.034 Score=52.07 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.++++.||+|+|||..+......+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999998755544444
No 264
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.55 E-value=0.0062 Score=51.68 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=32.5
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 133 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~ 133 (419)
..+.++++.||+|+|||..+......+...+..++++ +..+|+.++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceecccc
Confidence 5678999999999999987666666666677777775 5666766653
No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.0093 Score=56.31 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=59.1
Q ss_pred HhcCC---cEEEEcCCCCChhHHHHHHHHHHhcCC-----CeEEEEc-ccHHHHHHHHHHHHHh-ccccceEeccceec-
Q psy2764 85 LEEHN---HVFVTAHTSAGKTVIAEYAIALSQNHK-----TRTIYTS-PIKALSNQKYRDFRET-FQDVGLVTGDFQIN- 153 (419)
Q Consensus 85 ~~~~~---~~iv~apTGsGKT~~~~~~i~~~~~~~-----~~~lii~-Pt~~L~~q~~~~~~~~-~~~~~~~~g~~~~~- 153 (419)
+.+|+ .+++.||.|+|||..+...+..+.... +..+... .+...+. .+..- .+++-.+.......
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~----~i~~~~hPdl~~l~~~~~~~~ 114 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWR----QIAQGAHPNLLHITRPFDEKT 114 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHH----HHHcCCCCCEEEeeccccccc
Confidence 34554 599999999999987665555554421 1111101 1222222 22111 11222121111010
Q ss_pred --CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 154 --TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 154 --~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
....|-|--...+...+.... .....+++||||+|.+... -...+-..+...+.+..++++|
T Consensus 115 ~~~~~~I~vd~iR~l~~~l~~~~-~~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 115 GKFKTAITVDEIRRVGHFLSQTS-GDGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred ccccccCCHHHHHHHHHHhhhcc-ccCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 012232222223333333322 2346789999999998542 2333444444444556666665
No 266
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.52 E-value=0.012 Score=61.66 Aligned_cols=83 Identities=12% Similarity=0.078 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
|++-|.+|+.. ...+++|.|..|||||.+...-+..+.. ...++|+++-|+..+.++.+++.++.+.
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------- 75 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP------- 75 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-------
Confidence 78999999975 4578999999999999886666665543 2368999999999999999999887542
Q ss_pred ceecCCCcEEEEcHHHHHHH
Q psy2764 150 FQINTTASCLVMTTEILRSM 169 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~ 169 (419)
....+-|+|..++...
T Consensus 76 ----~~~~~~i~TFHs~~~~ 91 (726)
T TIGR01073 76 ----VAEDIWISTFHSMCVR 91 (726)
T ss_pred ----ccCCcEEEcHHHHHHH
Confidence 1234667887766543
No 267
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.50 E-value=0.0099 Score=54.29 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=45.1
Q ss_pred cccccccccCCCC-ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHH
Q psy2764 61 AKVPIMAHTWPFE-LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 61 ~~l~~~~~~~~~~-~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
++|+..+..++|. +.. .+--+..|..+++.|++|+|||..+...+...... +.+++++. +..-..++..++..
T Consensus 6 ~~~~~~~~~tg~~~Ld~----~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~E~~~~~~~~r~~~ 80 (271)
T cd01122 6 EALSNEEVWWPFPVLNK----LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-LEEPVVRTARRLLG 80 (271)
T ss_pred ccccccCCCCCcceeee----eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-cccCHHHHHHHHHH
Confidence 5566555555533 222 11224577899999999999997655444444344 77888876 33345556666544
Q ss_pred h
Q psy2764 139 T 139 (419)
Q Consensus 139 ~ 139 (419)
.
T Consensus 81 ~ 81 (271)
T cd01122 81 Q 81 (271)
T ss_pred H
Confidence 3
No 268
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.50 E-value=0.014 Score=54.51 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=25.2
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
..+++||||+|.+........+..++...+.+.++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998843333444555566655666666543
No 269
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.041 Score=51.85 Aligned_cols=118 Identities=9% Similarity=0.011 Sum_probs=64.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHH-HHHHHHHHHHhccccceEeccceecCCCcE-EEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKAL-SNQKYRDFRETFQDVGLVTGDFQINTTASC-LVMT 162 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L-~~q~~~~~~~~~~~~~~~~g~~~~~~~~~I-iv~T 162 (419)
.++.+++++|||+|||+.+.-....+...+.++.++. |.|.= +.|+....... + ..+ +..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l----g-----------vpv~~~~d 269 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL----D-----------VELIVATS 269 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC----C-----------CCEEecCC
Confidence 4678899999999999876555555555566666555 33332 33433322221 1 112 2346
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
|+.+...+.... ...+.++|+||=+-+.... ..-..+..+.....+..-++.+|||.
T Consensus 270 p~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~ 327 (407)
T PRK12726 270 PAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM 327 (407)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc
Confidence 776655443211 1246799999999865321 12222333333343334356677765
No 270
>PRK05973 replicative DNA helicase; Provisional
Probab=96.47 E-value=0.04 Score=48.78 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=41.0
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
+..|.-++|.|++|+|||..++-.+......+.+++|+. ..+-..|+.+++..+.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS-lEes~~~i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT-LEYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-EeCCHHHHHHHHHHcC
Confidence 457789999999999999876655554545678888886 4444678888887764
No 271
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.084 Score=50.60 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=62.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
..+++++|||+|||+.+.-.+... ...+.++.++. +.|..+.++........ ++ + .+.+..+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~l---gv-----p-----~~~~~~~~~ 290 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTM---GM-----P-----FYPVKDIKK 290 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhc---CC-----C-----eeehHHHHH
Confidence 458899999999999866655433 44566665554 34555554444443221 11 0 011111333
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccC-CCcchHHHHHHHHhcC---CCCcEEEEeeecCCh
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYIN-DSERGHVWEEVLILLP---KEVCIVMLSATVPNT 223 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~-~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~ 223 (419)
+...+. -.+.++|+||=+-+.. +......+..++.... +.-.++.+|||....
T Consensus 291 l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 291 FKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred HHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 333332 1467899999876542 2222233344444332 224578889998653
No 272
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.46 E-value=0.009 Score=51.82 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~ 107 (419)
.++++.||+|+|||+.+..
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4899999999999976433
No 273
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.017 Score=58.93 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
-+|+.+|.|+|||.++......+.
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999987655554443
No 274
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.43 E-value=0.016 Score=56.79 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=57.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEE---cH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVM---TT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~---Tp 163 (419)
.|.-+++.+++|+|||+.+...+......+.+++|+. +.+-..|+..+..++.-... ++.+. ..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~Ees~~qi~~ra~rlg~~~~------------~l~~~~e~~l 145 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GEESASQIKLRAERLGLPSD------------NLYLLAETNL 145 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-ccccHHHHHHHHHHcCCChh------------cEEEeCCCCH
Confidence 4578899999999999875555555555678899987 45666788777766532211 12222 23
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
+.+...+.. .+.+++|||+++.+..
T Consensus 146 ~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 146 EAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 344444422 3578999999997643
No 275
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.42 E-value=0.014 Score=60.71 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=54.8
Q ss_pred HHHHHHHHH--HcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhh
Q psy2764 315 FISFLNYLR--KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392 (419)
Q Consensus 315 ~~~l~~~l~--~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~ 392 (419)
+.++++.+. ...+.|+||-|.|++..+.++..|.+.|+.........++.-.+++.+- |.. ..|-|+|+++.|
T Consensus 554 ~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~A--G~~---g~VTIATNmAGR 628 (970)
T PRK12899 554 YHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGA--GKL---GAVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhc--CCC---CcEEEeeccccC
Confidence 344444432 2456789999999999999999999999886664443332222455443 332 267999999999
Q ss_pred hhhhcc
Q psy2764 393 GIGVHH 398 (419)
Q Consensus 393 GIDi~~ 398 (419)
|.||--
T Consensus 629 GTDIkl 634 (970)
T PRK12899 629 GTDIKL 634 (970)
T ss_pred Cccccc
Confidence 999953
No 276
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.41 E-value=0.012 Score=58.32 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=77.3
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEcCCCCChhHHHHHHHH-HHh---cCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 76 VFQKQAIIKLE-----EH----NHVFVTAHTSAGKTVIAEYAIA-LSQ---NHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 76 ~~Q~~ai~~~~-----~~----~~~iv~apTGsGKT~~~~~~i~-~~~---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
|+|+-.+..+. .| +.+++.-|=|.|||........ .+. ..+..+++++++++-+..+++.+.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46777776654 11 4788899999999986544433 221 34688999999999999999999988764
Q ss_pred cceEe---c-cceecCCCcEEEEcHHHHHHHHhc--CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC--CCCcEE
Q psy2764 143 VGLVT---G-DFQINTTASCLVMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--KEVCIV 214 (419)
Q Consensus 143 ~~~~~---g-~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--~~~~~l 214 (419)
...+. + ..-......|..-..+.....+.. ....-.+..++|+||+|.+.+.. .+..+..-.. ++++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~---~~~~l~~g~~~r~~pl~~ 157 (477)
T PF03354_consen 81 SPELRKRKKPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE---LYDALESGMGARPNPLII 157 (477)
T ss_pred ChhhccchhhhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH---HHHHHHhhhccCCCceEE
Confidence 21111 0 000000111221111111111111 11122357899999999876532 3333333332 356655
Q ss_pred EEe
Q psy2764 215 MLS 217 (419)
Q Consensus 215 ~~S 217 (419)
..|
T Consensus 158 ~IS 160 (477)
T PF03354_consen 158 IIS 160 (477)
T ss_pred EEe
Confidence 553
No 277
>KOG2228|consensus
Probab=96.40 E-value=0.055 Score=49.53 Aligned_cols=122 Identities=16% Similarity=0.263 Sum_probs=69.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--c--------cHHHHHHHHHHHHHhccccceEeccceecCCC
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--P--------IKALSNQKYRDFRETFQDVGLVTGDFQINTTA 156 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--P--------t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~ 156 (419)
++..+++++|-|||||..-...+...+..+.+.+++- + .++++.|....+.+. +...|...
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~----~k~~gsft----- 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI----VKSFGSFT----- 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh----heeecccc-----
Confidence 5679999999999999543333333334444444432 2 234444444444433 11112111
Q ss_pred cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC---CCCcEEEEeeecC
Q psy2764 157 SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP---KEVCIVMLSATVP 221 (419)
Q Consensus 157 ~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~ 221 (419)
-+-..++..+..+....+.-=++|+||.|.+..+.++..+..+....+ ..+-++|+|.-+.
T Consensus 119 ----e~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 119 ----ENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred ----hhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 012455555555544333334789999999887777777776666544 3455667766663
No 278
>KOG0991|consensus
Probab=96.40 E-value=0.0057 Score=52.77 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=24.1
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEE
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVM 215 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~ 215 (419)
.+-+.+|+||||.+.+ +-+-.+++.+..-.+..++.+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhh
Confidence 5678999999999866 444445555555444444433
No 279
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.39 E-value=0.028 Score=55.03 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=54.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++.||+|+|||..+......+.. .+.+++++. ...+..+....+..- +.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~~f~~~~~~~~~~~----------------------~~~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFLNDLVDSMKEG----------------------KLNEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHHhcc----------------------cHHHH
Confidence 46999999999999764433333333 345777765 344555544433210 12223
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhc-CCCCcEEEEeeec
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL-PKEVCIVMLSATV 220 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~-~~~~~~l~~SAT~ 220 (419)
...+. ..++++++||+|.+.+.. ....+..++..+ ..+.++++.|-..
T Consensus 188 ~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 188 REKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 22221 257899999999875432 222333333333 2344544444333
No 280
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.026 Score=52.84 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHhc-C---CcEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 75 DVFQKQAIIKLEE-H---NHVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 75 ~~~Q~~ai~~~~~-~---~~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
+|+|...+..+.. | .-+++.||.|.|||..+......+..
T Consensus 5 yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 5 YPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4567777776642 3 25889999999999876655555543
No 281
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.38 E-value=0.034 Score=54.40 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=87.3
Q ss_pred cCCCCccHHHHHHHHHHh------cC----CcEEEEcCCCCChhHHHHHHHH----HHhcCCCeEEEEcccHHHHHHHHH
Q psy2764 69 TWPFELDVFQKQAIIKLE------EH----NHVFVTAHTSAGKTVIAEYAIA----LSQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~------~~----~~~iv~apTGsGKT~~~~~~i~----~~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
.+|+++-|+|+-.+-.+. .+ +-++|..|-+.|||..++-.+. .....+..+.|++|+.+-+.+.++
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhH
Confidence 567779999999998875 12 4779999999999976442222 223678899999999999999998
Q ss_pred HHHHhccccceEeccceecCCCcEEEEcHH---HHHHHHhc--CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-
Q psy2764 135 DFRETFQDVGLVTGDFQINTTASCLVMTTE---ILRSMLYR--GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP- 208 (419)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~---~l~~~~~~--~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~- 208 (419)
.++.......-+.- ...-+.+-...+.. .....+.. +...-.+..+.|+||.|.+...+ ..+..+..-+.
T Consensus 137 ~ar~mv~~~~~l~~--~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~a 212 (546)
T COG4626 137 PARDMVKRDDDLRD--LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLGA 212 (546)
T ss_pred HHHHHHHhCcchhh--hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhcc
Confidence 88876543220000 00011111111111 11111111 22233456799999999886532 44444444333
Q ss_pred -CCCcEEEEee
Q psy2764 209 -KEVCIVMLSA 218 (419)
Q Consensus 209 -~~~~~l~~SA 218 (419)
++.+++..|-
T Consensus 213 r~~~l~~~ITT 223 (546)
T COG4626 213 RPEGLVVYITT 223 (546)
T ss_pred CcCceEEEEec
Confidence 4666666654
No 282
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.36 E-value=0.055 Score=54.32 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=79.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhccc------cceEecccee----cC
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD------VGLVTGDFQI----NT 154 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~~------~~~~~g~~~~----~~ 154 (419)
+.+-.++..|--.|||.+....+..+. ..+.++++++|.+..++.+++++...+.. +....|. .+ ..
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~n 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPD 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecC
Confidence 447788999999999986442333232 47999999999999999999999886542 2223332 22 11
Q ss_pred C--CcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeeecC
Q psy2764 155 T--ASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSATVP 221 (419)
Q Consensus 155 ~--~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~ 221 (419)
+ ..|.+++- ...+...-..++++|+|||+.+.+.. +..++-.+ ..+++++.+|.|-+
T Consensus 332 G~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 332 GSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred CCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccEEEEecCCC
Confidence 1 23444421 11222334578999999999886533 33343322 25899999998843
No 283
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.36 E-value=0.033 Score=49.71 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=41.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.|..+++.||+|+|||+.+.-.+....+.+.+++++. +.+-..|+.+++..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 5689999999999999876555554456788899988 5677788888877654
No 284
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.35 E-value=0.057 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.++++.||+|+|||.+.-.....+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999997755554443
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.35 E-value=0.021 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+.++++.||+|+|||.++......+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999998765443333
No 286
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.35 E-value=0.01 Score=55.05 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHH
Q psy2764 74 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALS 129 (419)
Q Consensus 74 ~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~ 129 (419)
+++.|.+.+..+ ..+.+++++|+||||||+..-..+..+. ....+++.+-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 467787777664 6778999999999999986433332322 3457888888888874
No 287
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.34 E-value=0.013 Score=54.23 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=57.5
Q ss_pred ccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccc-cceEecc
Q psy2764 74 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD-VGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~g~ 149 (419)
+++-|.+.+.. +..+++++++||||||||+..-..+..+.. ...+++++-.+.|+... ..+ +.+..+
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~--------~~~~v~~~~~- 187 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA--------APNVVQLRTS- 187 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC--------CCCEEEEEec-
Confidence 35556666655 467789999999999999864443333332 36789999888887421 111 112111
Q ss_pred ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 150 FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
.+ ..|...+.....+ .+.+.+|+.|+=
T Consensus 188 ----~~----~~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 188 ----DD----AISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred ----CC----CCCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 11 1266666544333 256899999986
No 288
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.33 E-value=0.0099 Score=63.79 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=93.4
Q ss_pred CccHHHHHHHHHHh-----cCCcEEEEcCCCCChhHHHHHHHHHHhc--C--CCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy2764 73 ELDVFQKQAIIKLE-----EHNHVFVTAHTSAGKTVIAEYAIALSQN--H--KTRTIYTSPIKALSNQKYRDFRETFQDV 143 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~-----~~~~~iv~apTGsGKT~~~~~~i~~~~~--~--~~~~lii~Pt~~L~~q~~~~~~~~~~~~ 143 (419)
+++++|.+.+.-+. .+.+.++....|.|||+..+..+..... . .+.+++++|+ +++.++.+.+.++.+..
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~~ 416 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPDL 416 (866)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCccc
Confidence 37899999886543 3678888999999999876555543221 1 3579999998 77888999988887654
Q ss_pred c---eEeccce-----ec-----CC------CcEEEEcHHHHHHHH-hcCCCCCCCccEEEEeCCcccCCCcchHHHHHH
Q psy2764 144 G---LVTGDFQ-----IN-----TT------ASCLVMTTEILRSML-YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203 (419)
Q Consensus 144 ~---~~~g~~~-----~~-----~~------~~Iiv~Tp~~l~~~~-~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i 203 (419)
. ..+|... .. .. .+++++|.+.+.... ......-...+.+|+||+|.+-+.. ......+
T Consensus 417 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~~l 495 (866)
T COG0553 417 RLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGKAL 495 (866)
T ss_pred cceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHHHH
Confidence 4 3555432 00 01 689999999887632 1122233457799999999864422 2222222
Q ss_pred HHhcCCCCcEEEEeeec
Q psy2764 204 LILLPKEVCIVMLSATV 220 (419)
Q Consensus 204 ~~~~~~~~~~l~~SAT~ 220 (419)
. .+....+ +.+|.|+
T Consensus 496 ~-~~~~~~~-~~LtgTP 510 (866)
T COG0553 496 Q-FLKALNR-LDLTGTP 510 (866)
T ss_pred H-HHhhcce-eeCCCCh
Confidence 2 3333333 8888887
No 289
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.30 E-value=0.0041 Score=58.85 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=20.5
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
-.|+.+++.||+|+|||..+......
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHh
Confidence 58899999999999999865443333
No 290
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.27 E-value=0.027 Score=54.78 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=24.5
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
.-.+++|||+|.+.. ...+.++..+. +..++++.+|..+.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att~n~ 131 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATTENP 131 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCCCCh
Confidence 456899999998753 22334444444 34566777765443
No 291
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.23 E-value=0.041 Score=48.77 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=36.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.|..+++.+++|+|||..+...+.....++..++++.- .+...++.+...++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 57899999999999998655444444456777877764 445566666555443
No 292
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.23 E-value=0.019 Score=58.63 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=76.3
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEec----cceecCCCcEEEE
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG----DFQINTTASCLVM 161 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g----~~~~~~~~~Iiv~ 161 (419)
...+=+++.||-|+|||+...-..- ....+..+.++.=- +--++.+.-+..+...++-.+. +...-.+.+.-+.
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~ 112 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVS 112 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC-CccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccccc
Confidence 3557899999999999976444333 45566667776522 2223333333333322221111 1100000111111
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
-..+.+.+...-....+.-++|+|+-|.+.+......++.++++.|++..+++.|-+-|.
T Consensus 113 -l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 113 -LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred -HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 122222222211223344689999999998888888899999999999999999877653
No 293
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.016 Score=58.84 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=18.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+|+.||.|+|||.++......+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 689999999999988665555443
No 294
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.19 E-value=0.012 Score=54.65 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=40.5
Q ss_pred ccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHH--hcCCCeEEEEcccHHHH
Q psy2764 74 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALS--QNHKTRTIYTSPIKALS 129 (419)
Q Consensus 74 ~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~--~~~~~~~lii~Pt~~L~ 129 (419)
+++.|.+.+.. +..+++++++|+||||||...-.++... ..+..+++++-.+.||.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccc
Confidence 36677777765 4688999999999999997643333222 24567888888888873
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.1 Score=51.39 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=60.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMT 162 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~T 162 (419)
.|+.+.+++|||+|||+.+..+...+... +.++.++. +.+.-+.++.. .+....++.. ..+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk---~ya~iLgv~v----------~~a~d 415 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLH---SYGRQLGIAV----------HEADS 415 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHH---HhhcccCcee----------EecCc
Confidence 57899999999999998755444433222 34555543 23433332222 2211111100 01123
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
++.+...+.. +.+.++||||.+-...... ....+..+... .....++.++++..
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss 470 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAH 470 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCC
Confidence 4455554532 3468999999998653211 11122222222 23456778888864
No 296
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.014 Score=56.90 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=18.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+++.||.|+|||.++...+..+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 379999999999988666555443
No 297
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.12 E-value=0.026 Score=46.59 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=69.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHH-HHHHHHhccccceEeccceecC-CCcEEEEcHHHH-
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK-YRDFRETFQDVGLVTGDFQINT-TASCLVMTTEIL- 166 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~-~~~~~~~~~~~~~~~g~~~~~~-~~~Iiv~Tp~~l- 166 (419)
-+.|-.++|.|||.+++-........+.+++++.=.+.-...= ...++++ +++.....+..... ..+ ..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~----~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTEN----DEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCC----hHHHHH
Confidence 4567788899999987777777778899999965444321111 1223333 33333332221100 000 11111
Q ss_pred --HHHHh--cCCCCCCCccEEEEeCCcccCCCcc--hHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 167 --RSMLY--RGSDVLRDLEYVIFDEVHYINDSER--GHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 167 --~~~~~--~~~~~l~~~~~lIiDE~h~l~~~~~--~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
..... ........++++|+||+-...+.+. ...+..+++.-+.+.-+|+.+-..|...
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 11111 1112345789999999997755553 3344455566566667777666665443
No 298
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.018 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
-+++.||.|+|||.++......+.
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 469999999999988666555543
No 299
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.11 E-value=0.054 Score=48.23 Aligned_cols=53 Identities=8% Similarity=0.117 Sum_probs=39.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.|.-+++.+++|+|||..+...+......+.+++++.-- +-..++.+.+.++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 567899999999999987665555555678888888754 44567777776654
No 300
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.10 E-value=0.024 Score=48.10 Aligned_cols=136 Identities=15% Similarity=0.001 Sum_probs=72.4
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHH-HHHHHHhccccceEeccce--ecC-CCcEEEE
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK-YRDFRETFQDVGLVTGDFQ--INT-TASCLVM 161 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~-~~~~~~~~~~~~~~~g~~~--~~~-~~~Iiv~ 161 (419)
.....+.+..++|.|||.+++-........+.+|+++.=.+--...= ...+++ .+.+.....+.. ... ..+--..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~-l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF-GGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc-CCCcEEEECCCCCcccCCCcHHHHH
Confidence 46679999999999999987777778888899999987555431111 122222 223322222211 110 0000000
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcch--HHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERG--HVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
.....+.... ....-..+++||+||+-...+.++- ..+..++..-+.+.-+|+..-..|..
T Consensus 99 ~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 99 AAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred HHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 0001111111 1122357899999999977665543 33444455555566666655545444
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.08 E-value=0.11 Score=48.41 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc-c-cHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS-P-IKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~-P-t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
+..+.+++|+|+|||+.+.-....+...+.+++++. . .+.-+.++...+....+ +.++...... .|..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~-i~~~~~~~~~---------dpa~ 183 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVG-VPVIAQKEGA---------DPAS 183 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcC-ceEEEeCCCC---------CHHH
Confidence 457889999999999886655555556667777765 3 34444343333333221 2222221110 1211
Q ss_pred -HHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhc------CCCCcEEEEeeecCC
Q psy2764 166 -LRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILL------PKEVCIVMLSATVPN 222 (419)
Q Consensus 166 -l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~------~~~~~~l~~SAT~~~ 222 (419)
....+... ...++++||||=+-++... ..-..+..+.+.+ .+.-.++.++||...
T Consensus 184 ~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 184 VAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 11111111 2356899999999876422 2223444444332 134457889999643
No 302
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.07 E-value=0.06 Score=54.11 Aligned_cols=104 Identities=19% Similarity=0.328 Sum_probs=58.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
.+++.|++|+|||..+..+...+. ..+.+++++. ..+++.+....+..- ..+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~~----------------------~~~~f~ 372 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRDG----------------------KGDSFR 372 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 489999999999965333333332 2456676654 566666655444220 112222
Q ss_pred HHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcC-CCCcEEEEeeecCCh
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLP-KEVCIVMLSATVPNT 223 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~-~~~~~l~~SAT~~~~ 223 (419)
. .+.++++|||||+|.+.... ....+-.+++.+. .+.++|+.|-..|..
T Consensus 373 ~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 373 R-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred H-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 1 24467999999999885432 2333444444443 356666644444443
No 303
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.024 Score=59.05 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=17.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
-+|+.||.|+|||.++......+
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 35899999999998765555444
No 304
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.06 E-value=0.035 Score=50.49 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHHHHHHHHH---h----cCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 75 DVFQKQAIIKLE---------EHNHVFVTAHTSAGKTVIAEYAIALS---Q----NHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 75 ~~~Q~~ai~~~~---------~~~~~iv~apTGsGKT~~~~~~i~~~---~----~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
+|.-.+++..+. .-.+++++|+||.|||.+..-..-.. . ..-+-+++-+|...-....|..+-.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 455556665542 12599999999999996532111100 0 1125566777887777777776655
Q ss_pred hccccceEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchH--HHHHHHHhcCC--CCcEE
Q psy2764 139 TFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH--VWEEVLILLPK--EVCIV 214 (419)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~--~~~~i~~~~~~--~~~~l 214 (419)
.++- ...... +...+.....+ ...--+++++||||+|.++...... ..-.+++.+.. .+.++
T Consensus 119 ~lga--------P~~~~~-----~~~~~~~~~~~-llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 119 ALGA--------PYRPRD-----RVAKLEQQVLR-LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred HhCc--------ccCCCC-----CHHHHHHHHHH-HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 4321 000000 12222111110 0112357899999999987654332 22233444444 35555
Q ss_pred EE
Q psy2764 215 ML 216 (419)
Q Consensus 215 ~~ 216 (419)
++
T Consensus 185 ~v 186 (302)
T PF05621_consen 185 GV 186 (302)
T ss_pred Ee
Confidence 54
No 305
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.05 E-value=0.071 Score=51.62 Aligned_cols=127 Identities=9% Similarity=0.161 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHH-HHhc--CCCeEEEEcccHH-HHHHHHHHHHHhccccce---Ee-ccc----eecC-C
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIA-LSQN--HKTRTIYTSPIKA-LSNQKYRDFRETFQDVGL---VT-GDF----QINT-T 155 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~-~~~~--~~~~~lii~Pt~~-L~~q~~~~~~~~~~~~~~---~~-g~~----~~~~-~ 155 (419)
+..++.+..|||||.+....+. .+.. ++.+++++-|+.. |-.-++..+.......++ +. ... .... +
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCC
Confidence 3568899999999987655433 3333 6789999999887 667777777765544332 11 111 1111 3
Q ss_pred CcEEEEcH-HHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC--CCCcEEEEeeecCChH
Q psy2764 156 ASCLVMTT-EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--KEVCIVMLSATVPNTL 224 (419)
Q Consensus 156 ~~Iiv~Tp-~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--~~~~~l~~SAT~~~~~ 224 (419)
..|++..- +...++ .....++++.+|||..+... .++.+...++ .....+.+|.||+...
T Consensus 82 ~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 82 KKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred eEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 34444332 111111 12234689999999987432 4555554444 2222488899987654
No 306
>KOG0058|consensus
Probab=96.05 E-value=0.015 Score=58.39 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=27.5
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCC
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~ 211 (419)
.+++..++|+|||-..+|......++..+..+..+.
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r 654 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLVQEALDRLMQGR 654 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC
Confidence 466778899999988888777777777777666553
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.031 Score=52.35 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
....+++|+||||.+.. ..+..+...+..-+.+..+++.+
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 35788999999998854 33344444444444556655554
No 308
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.018 Score=58.11 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
..+++.||.|+|||.++......+.
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3669999999999988665555443
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.04 E-value=0.048 Score=51.92 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=55.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEE---EcH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLV---MTT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv---~Tp 163 (419)
.|.-+++.+++|+|||+.+...+......+.+++|+.-. +-..|+..+..++.-.. . ++.+ ...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~----~--------~l~l~~e~~l 147 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGIST----E--------NLYLLAETNL 147 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCc----c--------cEEEEccCcH
Confidence 467899999999999987555555555566788888753 44567776666543211 0 1111 123
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+.+...+.. .+.+++|||+++.+.
T Consensus 148 e~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 148 EDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 445444432 357899999999764
No 310
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.03 E-value=0.014 Score=51.92 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=58.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhcc---ccceEe-ccceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccE
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLVT-GDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEY 182 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~---~~~~~~-g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~ 182 (419)
..+.+|||+.+---|.++.+.++.+-+ .++.+. -...+. ...+|.||||+++..++..+...+.++.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 468899999999999999999988742 222222 222222 25789999999999999999999999999
Q ss_pred EEEeCCc
Q psy2764 183 VIFDEVH 189 (419)
Q Consensus 183 lIiDE~h 189 (419)
||||--|
T Consensus 205 ivlD~s~ 211 (252)
T PF14617_consen 205 IVLDWSY 211 (252)
T ss_pred EEEcCCc
Confidence 9999876
No 311
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.00 E-value=0.02 Score=47.81 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=58.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~ 169 (419)
.+++.||.|+||+..+...+..+........ .+..-.-+.++.. ....++..+..+.. ...|-+ +.+..+
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~~~~~---~~~~d~~~~~~~~~---~~~i~i---~~ir~i 90 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCRRIEE---GNHPDFIIIKPDKK---KKSIKI---DQIREI 90 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHHHHHT---T-CTTEEEEETTTS---SSSBSH---HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHHHHHh---ccCcceEEEecccc---cchhhH---HHHHHH
Confidence 5799999999999876666655543322100 1112122221111 11122222222111 011222 333333
Q ss_pred HhcC--CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 170 LYRG--SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 170 ~~~~--~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
...- ...-...+++||||||.|.. .-...+.+.+..-+.+..++++|-.+.
T Consensus 91 ~~~~~~~~~~~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 91 IEFLSLSPSEGKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp HHHCTSS-TTSSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred HHHHHHHHhcCCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 3221 11225688999999998854 344445555566666777777765553
No 312
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.061 Score=53.70 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+++.||.|+|||.++......+.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999987666555443
No 313
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.028 Score=56.61 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
-+|+.||.|+|||.++......+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4699999999999887666555543
No 314
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.94 E-value=0.026 Score=57.32 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+|+.||.|+|||+++......+
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999998765554444
No 315
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.93 E-value=0.029 Score=58.08 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=26.1
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
...++||||+|.+.... ...++..+. +.++++.+||-++..
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHhc-CceEEEEEecCCChH
Confidence 45689999999875322 223334443 467788888866543
No 316
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.93 E-value=0.13 Score=48.05 Aligned_cols=38 Identities=5% Similarity=0.246 Sum_probs=23.3
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
..+++++||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988542 2233444445545556666544
No 317
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.04 Score=54.17 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
..+++.||.|+|||.++......+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHH
Confidence 479999999999998765554444
No 318
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.92 E-value=0.027 Score=55.56 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=33.8
Q ss_pred ccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHH--HhcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 40 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK--LEEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~--~~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
..|..+|.+..|+...+..+...+.. |+ .+...+.. +...+.+++.+|+|+|||+++-....
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~l-----p~----~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVEL-----PF----LHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHH-----Hh----hCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 34566777766676655433332211 11 01111211 12457899999999999976544433
No 319
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.92 E-value=0.038 Score=52.68 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHhcCCcEEEEcCCCCChhHHHHH
Q psy2764 83 IKLEEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 83 ~~~~~~~~~iv~apTGsGKT~~~~~ 107 (419)
+-+..+.|++..+|+|+|||.+|..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 4557889999999999999966554
No 320
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.88 E-value=0.0061 Score=54.78 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=31.0
Q ss_pred cEEEEcCCCCChhHHHHHHHH--HHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~--~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
-.+|-|||||||+-..--++. .+.-....|++|+|.+..+--.....++
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 457899999999953111111 2233467899999998876544444433
No 321
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.88 E-value=0.18 Score=48.63 Aligned_cols=131 Identities=8% Similarity=0.028 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++++++|+|||+.+.-....+.+.+.+++++. |.|.-+.++.+.+.+... +.++..... ..|..+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~~---------~dp~~i 170 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYTE---------SDPVKI 170 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecCC---------CCHHHH
Confidence 46789999999999887666666666677777765 345555554444433211 111110000 012221
Q ss_pred H-HHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecCChH-HHHHHhc
Q psy2764 167 R-SMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPNTL-EFADWVG 231 (419)
Q Consensus 167 ~-~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~-~~~~~l~ 231 (419)
. ..+... .-..+++||||=+-++... ..-..+..+.....+.-.++.++||..... +.++.+.
T Consensus 171 ~~~~l~~~--~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 171 ASEGVEKF--KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred HHHHHHHH--HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 1 111110 0135789999999865321 122333444444445556788889876443 3444443
No 322
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.068 Score=53.88 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHh
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
+++.||.|+|||.++......+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68999999999988766555443
No 323
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.052 Score=50.46 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHh----cCC---cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh-ccccce
Q psy2764 74 LDVFQKQAIIKLE----EHN---HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET-FQDVGL 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~~----~~~---~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~-~~~~~~ 145 (419)
++|+|..++..+. +++ -+++.||.|+||+..+......+...++...=-++. ...+..- .+++-.
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~-------c~~~~~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRT-------RQLIAAGTHPDLQL 77 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchH-------HHHHhcCCCCCEEE
Confidence 5778888887652 443 589999999999987666555444332210000111 1111111 112222
Q ss_pred Ee---ccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeee
Q psy2764 146 VT---GDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 146 ~~---g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT 219 (419)
+. .+...+....|.|-....+...+.... .....+++|||+||.|.. .-...+-+++.--+.+..+|+.|..
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINR-AACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCH-HHHHHHHHHhhCCCCCCeEEEEECC
Confidence 21 000000112233322223333332222 234678999999999854 2333344444444456667776644
No 324
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.84 E-value=0.017 Score=54.30 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=33.4
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 129 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~ 129 (419)
+..+++++++||||||||+.. .++........+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCcccc
Confidence 367899999999999999853 33444445567888888888874
No 325
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.84 E-value=0.032 Score=49.89 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS 123 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~ 123 (419)
..|.-+++.|++|+|||..+...+...... +.+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 367789999999999998765555544444 78888887
No 326
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.03 Score=58.78 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=24.8
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
.+.+++||||+|+|.... ...+.+++...+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999986532 233444444444566666654
No 327
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.059 Score=55.56 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH-hcCC-CeEEEEcc--cHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS-QNHK-TRTIYTSP--IKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT 163 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~-~~~~-~~~lii~P--t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp 163 (419)
++-+.+++|||+|||++...+...+ ...+ .++.++.- .|.=+.++...+.+..+ + +-.++.+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g---v----------pv~~~~~~ 251 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG---V----------PVHAVKDA 251 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC---C----------CccccCCH
Confidence 4578899999999998755544333 2333 35555442 22222222333322211 1 11233477
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
+.+...+.. +.+.++|+||=+-+..... ....+..+.....+.-.++.++||..
T Consensus 252 ~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 252 ADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 777665543 4466899999998764221 11222222222334456788899974
No 328
>PRK06620 hypothetical protein; Validated
Probab=95.72 E-value=0.039 Score=48.33 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCChhHH
Q psy2764 89 NHVFVTAHTSAGKTVI 104 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~ 104 (419)
..+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999965
No 329
>PF05729 NACHT: NACHT domain
Probab=95.70 E-value=0.083 Score=43.84 Aligned_cols=42 Identities=7% Similarity=0.189 Sum_probs=27.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCC-----CeEEEEcccHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHK-----TRTIYTSPIKALSNQ 131 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~-----~~~lii~Pt~~L~~q 131 (419)
-++|.|+.|+|||..+...+..+.... ..+++..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999987665555444332 245555555555554
No 330
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.69 E-value=0.034 Score=61.53 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=51.5
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
+|+-|.+||. ..+.+++|.|.-|||||.+..--+..+.. ...++++|+=|++.+.++.+++.+..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 5889999997 47889999999999999775444443332 22469999999999999988887754
No 331
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.17 Score=42.82 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
++=.++.+|..||||.-.+-.+......+.++++..|-..-- + ..+.+.+-.-.. ..-++|-.+..+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R----------~-~~~~V~Sr~G~~-~~A~~i~~~~~i~ 71 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR----------Y-GVGKVSSRIGLS-SEAVVIPSDTDIF 71 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccc----------c-ccceeeeccCCc-ccceecCChHHHH
Confidence 345688999999999865555556666788899888753310 0 011122111111 2335555666666
Q ss_pred HHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEE
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVM 215 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~ 215 (419)
..+....... .++.|.||||+.+.. ..-..+..+...+ ++.+++
T Consensus 72 ~~i~~~~~~~-~~~~v~IDEaQF~~~-~~v~~l~~lad~l--gi~Vi~ 115 (201)
T COG1435 72 DEIAALHEKP-PVDCVLIDEAQFFDE-ELVYVLNELADRL--GIPVIC 115 (201)
T ss_pred HHHHhcccCC-CcCEEEEehhHhCCH-HHHHHHHHHHhhc--CCEEEE
Confidence 5555433222 288999999997754 3333344443332 344443
No 332
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.07 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.||.|+|||..+......+
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHh
Confidence 36899999999998765554444
No 333
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.64 E-value=0.029 Score=58.84 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=56.2
Q ss_pred HHHHHHHHH--HcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhh
Q psy2764 315 FISFLNYLR--KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392 (419)
Q Consensus 315 ~~~l~~~l~--~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~ 392 (419)
+.++++.+. ...+.|+||-|.|++..+.+++.|...|++........++.-.+++++-. .. ..|-|||+++.|
T Consensus 614 ~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG--~~---GaVTIATNMAGR 688 (1112)
T PRK12901 614 YNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAG--QP---GTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcC--CC---CcEEEeccCcCC
Confidence 444444442 24677899999999999999999999999876655544333334554442 22 167999999999
Q ss_pred hhhhc
Q psy2764 393 GIGVH 397 (419)
Q Consensus 393 GIDi~ 397 (419)
|.||.
T Consensus 689 GTDIk 693 (1112)
T PRK12901 689 GTDIK 693 (1112)
T ss_pred CcCcc
Confidence 99996
No 334
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.025 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=20.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
..+++.||.|+|||.++......+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35889999999999887666555544
No 335
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.62 E-value=0.12 Score=44.23 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
..+++.||.|+|||..+...+..+.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4689999999999987666555544
No 336
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.042 Score=54.06 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.||+|+|||.++-.....+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999998765554444
No 337
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.065 Score=53.23 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHh
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
+++.||.|+|||+++......+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999998665555443
No 338
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.57 E-value=0.076 Score=57.37 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=34.3
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
..--+||||++|.+.+......+..++...+.+..+++.|-+.+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34458999999998665556678888888888899888887644
No 339
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.56 E-value=0.039 Score=57.31 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHhcCC----cCCCCchhhHHHHHH
Q psy2764 315 FISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM-DFSTATEKSKIHRFFQDSIRNLQN----EDDRALPQVKRLEQL 389 (419)
Q Consensus 315 ~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~-~~~~~~~~~~~~~~r~~~l~~f~~----g~~~~~~~vlv~t~~ 389 (419)
.+.+.+++. .. +.+|||++|.+..+.++..|... +........ ..+.+++++|++ ++. .||++|..
T Consensus 524 ~~~i~~l~~-~~-gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~----~VL~g~~s 594 (697)
T PRK11747 524 AEFLPELLE-KH-KGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEG----SVLFGLQS 594 (697)
T ss_pred HHHHHHHHh-cC-CCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCC----eEEEEecc
Confidence 345555555 33 34999999999999999988642 222222221 235667766663 444 68999999
Q ss_pred HhhhhhhccCC
Q psy2764 390 LKNGIGVHHSG 400 (419)
Q Consensus 390 l~~GIDi~~~~ 400 (419)
+.+|||+|.-.
T Consensus 595 f~EGVD~pGd~ 605 (697)
T PRK11747 595 FAEGLDLPGDY 605 (697)
T ss_pred ccccccCCCCc
Confidence 99999998643
No 340
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.56 E-value=0.12 Score=51.17 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
..+++.||.|+|||.++-.....+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3799999999999988665555443
No 341
>KOG0739|consensus
Probab=95.56 E-value=0.17 Score=45.54 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=61.7
Q ss_pred HHHhcCC-----cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCc
Q psy2764 83 IKLEEHN-----HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157 (419)
Q Consensus 83 ~~~~~~~-----~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~ 157 (419)
|.+..|+ -+++-+|+|+||+.. . .........+.+-+.+-.|+..|...-+++..
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYL--A--KAVATEAnSTFFSvSSSDLvSKWmGESEkLVk---------------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYL--A--KAVATEANSTFFSVSSSDLVSKWMGESEKLVK---------------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHH--H--HHHHhhcCCceEEeehHHHHHHHhccHHHHHH----------------
Confidence 4555654 699999999999932 2 22222223577778888888777655544421
Q ss_pred EEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc--------chHHHHHHHHhcC---CCCcEEEEeee
Q psy2764 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE--------RGHVWEEVLILLP---KEVCIVMLSAT 219 (419)
Q Consensus 158 Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~--------~~~~~~~i~~~~~---~~~~~l~~SAT 219 (419)
.|..+... .....|.|||+|.+.... ++...+.+.++-+ .+--++.+.||
T Consensus 216 -------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 216 -------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred -------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 12222222 245789999999774322 2222333333332 34567888888
No 342
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.067 Score=51.03 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~--~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
..-+++.||+|+|||-..-.+.......+ .+++++....- ..+....+.. .+.+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-~~~~v~a~~~----------------------~~~~~ 169 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-TNDFVKALRD----------------------NEMEK 169 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-HHHHHHHHHh----------------------hhHHH
Confidence 56899999999999965333333333333 35555543221 1111111110 01111
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcC-CCCcEEEEeeecCChH
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLP-KEVCIVMLSATVPNTL 224 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~ 224 (419)
+. ... ++++++||.++.+... .....+-.+++.+. .+.|+++.|-..|...
T Consensus 170 Fk-------~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 170 FK-------EKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HH-------Hhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 11 234 7899999999988543 23444455555554 3457777776666554
No 343
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.032 Score=51.37 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHhc-CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHH
Q psy2764 74 LDVFQKQAIIKLEE-HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 132 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~-~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~ 132 (419)
+++-|...+..+.. ..|+++++.||||||+. +-++........|++.+--|.||--+.
T Consensus 158 ~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 158 MIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDERVITIEDTAELQLAH 216 (355)
T ss_pred cCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcccEEEEeehhhhccCC
Confidence 57888888887654 45999999999999975 233444444556999999999885543
No 344
>KOG0745|consensus
Probab=95.55 E-value=0.018 Score=54.30 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
...|+|+.+|||||||+.+.-+...+ .-+.+|.=|-
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l--dVPfaIcDcT 260 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL--DVPFAICDCT 260 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh--CCCeEEeccc
Confidence 45699999999999997755544333 3344444343
No 345
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.53 E-value=0.013 Score=55.40 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=31.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
-.|+..++.||.|+|||+.+-........+ ....++++-..+-..++.+..+..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsI 221 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSV 221 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHh
Confidence 478999999999999997644433333322 223334443444334444444443
No 346
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.52 E-value=0.038 Score=47.31 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2764 74 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 127 (419)
Q Consensus 74 ~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~ 127 (419)
+++-|.+.+... ..+..+++.+|||||||+..-. +........+++.+-...+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a-L~~~i~~~~~~i~ied~~E 63 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA-LLAFIPPDERIITIEDTAE 63 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH-HHhhcCCCCCEEEECCccc
Confidence 467788888764 6789999999999999986433 3333344555665544433
No 347
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.16 Score=47.34 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCC---cEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 77 FQKQAIIKLEEHN---HVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 77 ~Q~~ai~~~~~~~---~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
..++....+.+|+ -.++.||.|.||+..+......+..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 3333334444443 6779999999999876665555544
No 348
>PHA00729 NTP-binding motif containing protein
Probab=95.49 E-value=0.043 Score=47.97 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
.++++.|++|+|||..+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 48999999999999765443
No 349
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.42 E-value=0.072 Score=51.94 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=21.7
Q ss_pred HHHhcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 83 IKLEEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 83 ~~~~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
-.++.+.++++.+|+|+|||+++-...
T Consensus 34 ~aalag~hVLL~GpPGTGKT~LAraLa 60 (498)
T PRK13531 34 LAALSGESVFLLGPPGIAKSLIARRLK 60 (498)
T ss_pred HHHccCCCEEEECCCChhHHHHHHHHH
Confidence 345799999999999999998754443
No 350
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.40 E-value=0.039 Score=50.03 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2764 75 DVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 127 (419)
Q Consensus 75 ~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~ 127 (419)
.+.|.+.+..+. .+..+++++|||||||+.....+..+.....+++.+--..|
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce
Confidence 566777776553 45579999999999998643333344334556666655545
No 351
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.09 Score=50.02 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCC----------eEEEEcccHHHHHHHHHHHHHh-ccccceEecccee---cCC
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKT----------RTIYTSPIKALSNQKYRDFRET-FQDVGLVTGDFQI---NTT 155 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~----------~~lii~Pt~~L~~q~~~~~~~~-~~~~~~~~g~~~~---~~~ 155 (419)
-+++.||.|+||+..+......+....+ ..+-+++.-.- ...+..- .+++-.+.-.... ...
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~----c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV----ARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH----HHHHHccCCCCeEEEeccccccccccc
Confidence 5899999999999876655555443221 11122222221 2222221 1222222110000 112
Q ss_pred CcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 156 ASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 156 ~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
..|.|-....+...+... .......++||||+|.+.. .....+-+.+...+.+..+|++|..+
T Consensus 119 ~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 334333333333333322 2335678999999998853 22333344444444455566655443
No 352
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.16 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
..+++.||.|+|||..+......+
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999998765554443
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=95.31 E-value=0.23 Score=48.27 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=63.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
.-+++++++|+|||+++.-.+..+... +.+++++. +.|.-+.++...+.... ++.++.... -..|..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~-gv~v~~~~~---------~~dp~~ 170 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQI-GVPVFPSGD---------GQDPVD 170 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhc-CCeEEecCC---------CCCHHH
Confidence 357899999999999876666655555 66666655 45555443333332221 122222111 013433
Q ss_pred HHH-HHhcCCCCCCCccEEEEeCCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 166 LRS-MLYRGSDVLRDLEYVIFDEVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 166 l~~-~~~~~~~~l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
+.. .+... ....++++|+|=+-++.. ...-..+..+...+.+.--++.++|+..
T Consensus 171 i~~~a~~~a--~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 171 IAKAALEEA--KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHHH--HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 332 11111 123578999998876532 1222333444444444444677777754
No 354
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.31 E-value=0.026 Score=52.91 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~ 130 (419)
+..+++++++|+||||||+.. -++........+++.+--+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAIERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCCCeEEEecCCCcccc
Confidence 357899999999999999863 334444455678888777777643
No 355
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.28 E-value=0.11 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+|+.||.|+|||..+......+.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhC
Confidence 699999999999988766655543
No 356
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.083 Score=53.58 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
-+++.||.|+|||.++......+.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 459999999999988666555544
No 357
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.016 Score=52.44 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=21.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+...|+++++|||||||+.+.-+...+
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHh
Confidence 355799999999999998766655444
No 358
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.11 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=17.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
-+++.||.|+|||+++......+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998766555444
No 359
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.18 E-value=0.13 Score=51.87 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=74.0
Q ss_pred CccHHHHHHHHHHhc--CCcEEEEcCCCCChhHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHH-HHHHHhcccc----c
Q psy2764 73 ELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKY-RDFRETFQDV----G 144 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~--~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~~~lii~Pt~~L~~q~~-~~~~~~~~~~----~ 144 (419)
+.+|+|.+....+.. -+.+.+..++-+|||.+..-.+.. +......++++.||.+++.+.. .++..++... +
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~ 95 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRR 95 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 479999999999844 369999999999999865444432 2345577999999999999987 5777666541 1
Q ss_pred eEec------ccee----cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 145 LVTG------DFQI----NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 145 ~~~g------~~~~----~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
.+.. +.+. -.+..+.++.-.+- ....-..++++++||+|.+..
T Consensus 96 ~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 96 KLSPSKSRDSGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HhCchhhcccCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccc
Confidence 2222 1110 01233433332111 112334678999999998843
No 360
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.17 E-value=0.079 Score=51.17 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
-......+..+..++++++.+|+|+|||..+....
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 45556667777889999999999999997765443
No 361
>PTZ00293 thymidine kinase; Provisional
Probab=95.15 E-value=0.17 Score=43.85 Aligned_cols=86 Identities=9% Similarity=0.015 Sum_probs=49.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
|.--++.||.+||||.-.+-.+......+.+++++-|...- ++.. .+.+.+.......+ +.+.....+.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~Dt---------R~~~-~~~I~Sh~g~~~~a-~~v~~~~e~~ 72 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDT---------RYSD-EQNISSHDKQMLKA-IKVSKLKEVL 72 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccc---------cCCC-CCcEEecCCCccee-EEcCCHHHHH
Confidence 45568899999999975445555556678889999886531 1100 01111111111112 4444433333
Q ss_pred HHHhcCCCCCCCccEEEEeCCccc
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l 191 (419)
.. +..+++|+|||++.+
T Consensus 73 ~~-------~~~~dvI~IDEaQFf 89 (211)
T PTZ00293 73 ET-------AKNYDVIAIDEGQFF 89 (211)
T ss_pred Hh-------ccCCCEEEEEchHhh
Confidence 21 246899999999976
No 362
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.14 E-value=0.03 Score=49.48 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
...+++.||.|+|||...-..+......+..++++.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~ 56 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDF 56 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEec
Confidence 5799999999999996533333333233334555554
No 363
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.13 E-value=0.053 Score=52.55 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 75 DVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 75 ~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+.|.+.+..+. ...=+++.+|||||||+.. +.++..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ 281 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSE 281 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHH
Confidence 778888887764 4567889999999999863 444433
No 364
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.13 E-value=0.23 Score=48.82 Aligned_cols=91 Identities=8% Similarity=0.069 Sum_probs=57.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
.|.-+++.+++|+|||+.++..+......+.+++|+.. .+-..|+..+..++.-... ....... .+.+.+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~-EEs~~qi~~ra~rlg~~~~----~l~~~~e-----~~~~~I 162 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG-EESLQQIKMRAIRLGLPEP----NLYVLSE-----TNWEQI 162 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC-cCCHHHHHHHHHHcCCChH----HeEEcCC-----CCHHHH
Confidence 46789999999999998766555555556678999875 4556777777666532110 0000000 134555
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
...+.. .+.+++|||.+..+.
T Consensus 163 ~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 163 CANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHh-----cCCcEEEEecchhhc
Confidence 544432 256899999998664
No 365
>KOG0298|consensus
Probab=95.12 E-value=0.097 Score=55.72 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh------------------cCCCeEEEEcccHHHHHHHHHHHHHhcccc--ceE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ------------------NHKTRTIYTSPIKALSNQKYRDFRETFQDV--GLV 146 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~------------------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~--~~~ 146 (419)
.|+.+++.-..|.|||..-+.....-. ...+.+|||+|. ++..||+..+.+..... ..+
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEE
Confidence 457888999999999976333222110 124669999998 78899999999876652 112
Q ss_pred eccce--------ecCCCcEEEEcHHHHHHHHhcCCC------------------CCCCcc--EEEEeCCcccCCCcchH
Q psy2764 147 TGDFQ--------INTTASCLVMTTEILRSMLYRGSD------------------VLRDLE--YVIFDEVHYINDSERGH 198 (419)
Q Consensus 147 ~g~~~--------~~~~~~Iiv~Tp~~l~~~~~~~~~------------------~l~~~~--~lIiDE~h~l~~~~~~~ 198 (419)
+-|.. .--++|||++|+..|..-+.+... .|-.+. -|++|||+++-. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 22221 113699999999998765544311 011111 489999998865 333
Q ss_pred HHHHHHHhcCCCCcEEEEeeecCChHH----HHHHhcC
Q psy2764 199 VWEEVLILLPKEVCIVMLSATVPNTLE----FADWVGN 232 (419)
Q Consensus 199 ~~~~i~~~~~~~~~~l~~SAT~~~~~~----~~~~l~~ 232 (419)
.....+.+++ ....=++|+|+=...+ +..+++.
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl~~Ll~fLk~ 566 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDLFPLLEFLKL 566 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhhHHHHHHhcC
Confidence 3444555554 3555788999543332 4555555
No 366
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.07 E-value=0.028 Score=51.28 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 77 FQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 77 ~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
...+.+.. +..+.+++++||||||||+.....+..+.....+++++-.+.|+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 33334433 35689999999999999987544333333334888888877775
No 367
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.18 Score=47.31 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHHHHHh--cC---CcEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 76 VFQKQAIIKLE--EH---NHVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 76 ~~Q~~ai~~~~--~~---~~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
|+|...+..+. .+ .-+++.||.|.||+..+......+..
T Consensus 4 PW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 4 PWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred cccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555554442 22 37889999999999877665555543
No 368
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.072 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=18.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+|+.||.|+|||.++......+.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 468999999999987655554443
No 369
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.95 E-value=0.089 Score=44.01 Aligned_cols=130 Identities=17% Similarity=0.114 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHH-HHHHHHHhccccceEeccc--eecC-CCcEEEEcHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQ-KYRDFRETFQDVGLVTGDF--QINT-TASCLVMTTE 164 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q-~~~~~~~~~~~~~~~~g~~--~~~~-~~~Iiv~Tp~ 164 (419)
.-+.+..++|.|||.+++-........+.+++++.=.+.-... =...+.++ .+.....+. .... +..- ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~---~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREA---DTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHH---HHH
Confidence 3577888899999998777777778889999888533322000 01122222 222211111 1110 0000 001
Q ss_pred HHHHHHhc--CCCCCCCccEEEEeCCcccCCCcch--HHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 165 ILRSMLYR--GSDVLRDLEYVIFDEVHYINDSERG--HVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 165 ~l~~~~~~--~~~~l~~~~~lIiDE~h~l~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
.....+.. ....-..+++||+||+-...+.++- ..+..++..-+++..+++..-..|..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~ 143 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQD 143 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 11111111 1112357899999999966555532 23445555556666766665555543
No 370
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.14 Score=49.51 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=18.8
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+++.||.|+|||.++......+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999998766555443
No 371
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.094 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
..+|+.+|.|+|||.++......+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3688999999999998766655543
No 372
>PRK10436 hypothetical protein; Provisional
Probab=94.92 E-value=0.07 Score=52.28 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=33.6
Q ss_pred cHHHHHHHHHH--hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH
Q psy2764 75 DVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126 (419)
Q Consensus 75 ~~~Q~~ai~~~--~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~ 126 (419)
.+.|.+.+..+ ..+.-+++++|||||||+.....+..+.....+++-+-.-.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPv 256 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPV 256 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCc
Confidence 56677777665 46678999999999999864333334434445555444333
No 373
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.16 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
..+|+.||.|+|||.++...+..+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 4679999999999988666655543
No 374
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.29 Score=45.81 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHHHHHHHHh--cC---CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 76 VFQKQAIIKLE--EH---NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 76 ~~Q~~ai~~~~--~~---~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
|+|..++..+. .+ ..+++.||.|.|||..+......+.
T Consensus 4 PW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 4 PWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 45666565553 22 3688999999999987666555443
No 375
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.87 E-value=0.048 Score=57.04 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=55.7
Q ss_pred CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 155 TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 155 ~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
...|+++||..+..-+..+...+..+..+||||||++.+......+-.+.+.-.+..-+.+|||.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 35799999999988788888999999999999999987655555555666665667889999999875
No 376
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.85 E-value=0.096 Score=51.64 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=45.2
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
.+++-++|+|..|||||.+++--+..+.. .+..++|+.|++.+..-+.+.+=.++..
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 46788999999999999998766554432 3455999999999999988888777653
No 377
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.84 E-value=0.18 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
...++++.||+|+|||.++......
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999775544433
No 378
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.83 E-value=0.4 Score=46.55 Aligned_cols=121 Identities=9% Similarity=0.078 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
..+++++++|+|||+++.-.+..+. +.+.+++++. +.|.-+.++...+....+ +.++..... ..|..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-vp~~~~~~~---------~~P~~ 169 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG-VPVFALGKG---------QSPVE 169 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC-CceEecCCC---------CCHHH
Confidence 3688999999999998766655543 4566666655 344444444443332211 111111100 12322
Q ss_pred HH-HHHhcCCCCCCCccEEEEeCCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 166 LR-SMLYRGSDVLRDLEYVIFDEVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 166 l~-~~~~~~~~~l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
+. ..+.. .....+++||+|=+-++.. ...-..+..+...+.+.--++.+.|+..
T Consensus 170 i~~~al~~--~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 170 IARRALEY--AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred HHHHHHHH--HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 22 11111 1124568899998886532 1222334444444444444677777754
No 379
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.77 E-value=0.98 Score=44.47 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=57.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH-hcCC-CeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS-QNHK-TRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMT 162 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~-~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~T 162 (419)
.++.+.++||||+|||++...+...+ ...+ .++.++. +.|.-+.++...+.+..+ +.. ..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG-Vpv------------~~~~~ 321 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG-VPV------------HAVKD 321 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC-CCe------------eccCC
Confidence 35678999999999998865554433 2333 3454333 223344444444433322 100 01112
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC----CCCcEEEEeeecCC
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP----KEVCIVMLSATVPN 222 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~----~~~~~l~~SAT~~~ 222 (419)
+..+...+ ..+.+.++++||.+-+.. ....+...+..+. +...++.++||...
T Consensus 322 ~~Dl~~aL----~~L~d~d~VLIDTaGr~~---~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 322 AADLRLAL----SELRNKHIVLIDTIGMSQ---RDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred chhHHHHH----HhccCCCeEEeCCCCcCh---hhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 22222111 234566899999976532 1112222222222 22257888999753
No 380
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.74 E-value=0.23 Score=41.68 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=52.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSML 170 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~ 170 (419)
+++.+++|||||..+...+.. .+.+++++.-.+.+-.++.+++.+.-. .....-..+-+|..+...+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~----------~R~~~w~t~E~~~~l~~~l 68 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRK----------RRPAHWRTIETPRDLVSAL 68 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHH----------hCCCCceEeecHHHHHHHH
Confidence 588999999999865544332 567899999888887777777665311 0112223344555565555
Q ss_pred hcCCCCCCCccEEEEeCCcc
Q psy2764 171 YRGSDVLRDLEYVIFDEVHY 190 (419)
Q Consensus 171 ~~~~~~l~~~~~lIiDE~h~ 190 (419)
... +..+.++||=...
T Consensus 69 ~~~----~~~~~VLIDclt~ 84 (169)
T cd00544 69 KEL----DPGDVVLIDCLTL 84 (169)
T ss_pred Hhc----CCCCEEEEEcHhH
Confidence 332 1345788887663
No 381
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.73 Score=44.57 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=57.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH-hc-C-CCeEEEEccc-HHHHHHHHHHHHHhccccceEeccceecCCCcEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS-QN-H-KTRTIYTSPI-KALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMT 162 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~-~~-~-~~~~lii~Pt-~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~T 162 (419)
.+..+.++||||+|||+....+.... .. . ..-.++...+ |.=+.++...+.+..+ +. -..+.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp------------~~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VS------------VRSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Cc------------eecCCC
Confidence 46689999999999998744333222 11 2 2334444444 3333333333333321 11 112234
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
+..+...+. .+.+.++++||.+-+.... .....+..+.........++.+|||...
T Consensus 257 ~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~ 313 (420)
T PRK14721 257 IADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG 313 (420)
T ss_pred HHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH
Confidence 444433332 2567789999997543210 0111222221111223456889999743
No 382
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.32 Score=45.27 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=25.7
Q ss_pred cHHHHHHHHH----HhcCC---cEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 75 DVFQKQAIIK----LEEHN---HVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 75 ~~~Q~~ai~~----~~~~~---~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
+|+|...... +..++ -+++.||.|.||+..+...+..+..
T Consensus 5 yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3444444443 33444 7899999999999876655554433
No 383
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.70 E-value=0.018 Score=51.13 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=12.5
Q ss_pred CCccEEEEeCCcccC
Q psy2764 178 RDLEYVIFDEVHYIN 192 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~ 192 (419)
...+.+||||+..+.
T Consensus 61 ~~~~~liiDE~~~~~ 75 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLP 75 (234)
T ss_pred CcCCEEEEeccccCC
Confidence 457899999999864
No 384
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.69 E-value=0.32 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
...++++.||+|+|||.++....
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 35699999999999997754443
No 385
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.66 E-value=0.023 Score=50.91 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCCChhHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~ 105 (419)
+..|+.+++.+|.|+|||+.+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 368999999999999999753
No 386
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.64 E-value=0.031 Score=58.35 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCCh--------hHHHHHHHHHHHHHHhcCCcCCCCchhhHHHH
Q psy2764 316 ISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTA--------TEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE 387 (419)
Q Consensus 316 ~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~--------~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t 387 (419)
+.+.+++...+ +.+|||.+|-..-+.+++.+...|+... .+... ...+.+++++|++.-..+...+|.++
T Consensus 512 ~~i~~~~~~~p-gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~av 589 (705)
T TIGR00604 512 ELLVEFSKIIP-DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLLSV 589 (705)
T ss_pred HHHHHHhhcCC-CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEEEe
Confidence 34444444333 4599999999999999988876543110 01111 13567788888632111112578877
Q ss_pred --HHHhhhhhhccC
Q psy2764 388 --QLLKNGIGVHHS 399 (419)
Q Consensus 388 --~~l~~GIDi~~~ 399 (419)
.-+++|||+++-
T Consensus 590 ~gGk~sEGIDf~~~ 603 (705)
T TIGR00604 590 AGGKVSEGIDFCDD 603 (705)
T ss_pred cCCcccCccccCCC
Confidence 889999999875
No 387
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=94.62 E-value=0.083 Score=48.59 Aligned_cols=67 Identities=27% Similarity=0.287 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~ 151 (419)
.++-|..-+.++.++.-++..+|-|+|||..+......... .-.++|..=| .-..+...|.+.|+.+
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP-----------aVEAGEklGfLPGdl~ 197 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP-----------AVEAGEKLGFLPGDLR 197 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc-----------chhcCcccCcCCCchh
Confidence 48999999999999999999999999999654433333332 3356666666 2223444677777654
No 388
>PRK04328 hypothetical protein; Provisional
Probab=94.54 E-value=0.082 Score=47.55 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=40.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.|..+++.+|+|+|||..+...+....+++.+++++. +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 5789999999999999866555555556788888887 6666677777776654
No 389
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.51 E-value=0.24 Score=50.09 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
..+++.||.|+|||.++-.....+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999998766555444
No 390
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.49 E-value=0.028 Score=54.13 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=40.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
++++.||||||||.. +.++.+..-...++|+=|--++...+....++.+..
T Consensus 1 H~lv~g~tGsGKt~~--~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~ 51 (384)
T cd01126 1 HVLVFAPTRSGKGVG--FVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRK 51 (384)
T ss_pred CeeEecCCCCCCccE--EEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCe
Confidence 579999999999976 456655555678999999999998888777765444
No 391
>PF12846 AAA_10: AAA-like domain
Probab=94.48 E-value=0.061 Score=49.68 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~ 130 (419)
+.++++.|+||+|||......+......+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 4689999999999998877667777888899999977766554
No 392
>PRK08506 replicative DNA helicase; Provisional
Probab=94.42 E-value=0.32 Score=48.11 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=72.4
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEecccee---------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQI--------- 152 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~~--------- 152 (419)
+..|.-+++.|.||.|||..++-.+......+..++++. ...-..|+..++......+. +..|..+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 267 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS-LEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDA 267 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe-CcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 356778899999999999876655555555666777664 44556777777655433211 11222110
Q ss_pred ---cCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc----chHHHHHHHHhcC-----CCCcEEE
Q psy2764 153 ---NTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE----RGHVWEEVLILLP-----KEVCIVM 215 (419)
Q Consensus 153 ---~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~----~~~~~~~i~~~~~-----~~~~~l~ 215 (419)
-.+..+.| .|+..+...+.+-......+++||||=.+.+...+ +...+..+.+.++ -++.+++
T Consensus 268 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~ 347 (472)
T PRK08506 268 CDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIA 347 (472)
T ss_pred HHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 01223433 24555554433211112358999999999875322 2222333333332 3677777
Q ss_pred Ee
Q psy2764 216 LS 217 (419)
Q Consensus 216 ~S 217 (419)
+|
T Consensus 348 ls 349 (472)
T PRK08506 348 LS 349 (472)
T ss_pred Ee
Confidence 76
No 393
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.41 E-value=0.24 Score=49.40 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
....+++||||+|.+.... ...+...+...++...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999986422 223334444445566666654
No 394
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.39 E-value=0.83 Score=42.14 Aligned_cols=131 Identities=12% Similarity=0.201 Sum_probs=79.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH-
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL- 166 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l- 166 (419)
.+++++-.|+|||+...-+...+...+.++++.+ --|+-|.++.+.|-+..+ +.++.+... . .|..+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~g-v~vI~~~~G-~--------DpAaVa 210 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLG-VPVISGKEG-A--------DPAAVA 210 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhC-CeEEccCCC-C--------CcHHHH
Confidence 5788999999999986666667788888888877 357777777776655532 223333211 1 12222
Q ss_pred HHHHhcCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHhcCCCC------cEEEEeeecCCh-HHHHHHhcC
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILLPKEV------CIVMLSATVPNT-LEFADWVGN 232 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~~~~~------~~l~~SAT~~~~-~~~~~~l~~ 232 (419)
.+.+... .-+++++|++|=|-++-... .-..++.+.+.+.+.. -++.+=||..+. ..-++.+..
T Consensus 211 fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~e 282 (340)
T COG0552 211 FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNE 282 (340)
T ss_pred HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHH
Confidence 1222221 24578999999999885432 3445666666665433 344457888743 344444444
No 395
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.37 E-value=0.089 Score=53.60 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=25.7
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEE
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 121 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~li 121 (419)
+..|+.+-+++|||||||+..-+..-......+++++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 4588999999999999997644443333334555655
No 396
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.12 Score=52.17 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=56.4
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce----ecC-CCcEEE
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ----INT-TASCLV 160 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~----~~~-~~~Iiv 160 (419)
.+|.-+++++|+|.|||- |+..+++.+.+-|- -+--||.. +.. +-.-|=
T Consensus 348 ~kGpILcLVGPPGVGKTS------------------------LgkSIA~al~Rkfv--R~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 348 LKGPILCLVGPPGVGKTS------------------------LGKSIAKALGRKFV--RISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred CCCcEEEEECCCCCCchh------------------------HHHHHHHHhCCCEE--EEecCccccHHHhccccccccc
Confidence 366788999999999993 33344444433222 12223322 111 122333
Q ss_pred EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 161 MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 161 ~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
+-|+++..-+.+....- -++++||+|.+....++.-...++..+
T Consensus 402 amPGrIiQ~mkka~~~N---Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 402 AMPGKIIQGMKKAGVKN---PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cCChHHHHHHHHhCCcC---CeEEeechhhccCCCCCChHHHHHhhc
Confidence 56999988776643221 289999999998877777666666655
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.34 E-value=0.14 Score=46.35 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=30.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.|.-+++.+|+|+|||..+.-.+......+.+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 67899999999999998766555555556888999883
No 398
>PHA00350 putative assembly protein
Probab=94.31 E-value=0.3 Score=46.68 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHH-HHHHHhcCCCeE
Q psy2764 91 VFVTAHTSAGKTVIAEY-AIALSQNHKTRT 119 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~-~i~~~~~~~~~~ 119 (419)
.++.|..|||||+.+.. .+....+.+.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V 33 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKV 33 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEE
Confidence 57899999999987664 344555566533
No 399
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.29 E-value=0.28 Score=47.88 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=69.3
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEecccee--------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQI-------- 152 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~~-------- 152 (419)
+..|.-+++.|++|+|||..++-.+... .+.+..++++. ..--..|+..++......+. +..|....
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-lEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~ 269 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-LEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 4567889999999999998665555443 35577777776 33445555555544322211 11121100
Q ss_pred ----cCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCC---cchHHHHHHHHhcC-----CCCcEEE
Q psy2764 153 ----NTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDS---ERGHVWEEVLILLP-----KEVCIVM 215 (419)
Q Consensus 153 ----~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~---~~~~~~~~i~~~~~-----~~~~~l~ 215 (419)
-.+.++.| .|.+.+...+.+-......+++||||=.+.+... .+...+..+.+.++ .++.+++
T Consensus 270 ~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~ 349 (421)
T TIGR03600 270 AVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVL 349 (421)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 01123444 2444454433321111225889999999887531 22222333333322 3566666
Q ss_pred Eee
Q psy2764 216 LSA 218 (419)
Q Consensus 216 ~SA 218 (419)
+|-
T Consensus 350 lsQ 352 (421)
T TIGR03600 350 LAQ 352 (421)
T ss_pred ecc
Confidence 653
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.28 E-value=0.098 Score=47.40 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=43.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
.|+.+++.+++|||||..+.-.+....+.+.++++++ +.+...++.+.+.++.-.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs-~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS-TEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE-ecCCHHHHHHHHHHcCCC
Confidence 6789999999999999876655666666688888877 678888888888775443
No 401
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.27 E-value=0.11 Score=52.57 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=32.3
Q ss_pred cHHHHHHHHHH--hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 75 DVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 75 ~~~Q~~ai~~~--~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
.+.|.+.+..+ ..+..++++||||||||+.....+..+.....+++-+-..
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdp 353 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDP 353 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCC
Confidence 56777777665 3456889999999999987433333333334444444333
No 402
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.26 E-value=0.16 Score=53.62 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+..+++.+|+|+|||..+-.....+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999997654443333
No 403
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.22 E-value=0.49 Score=42.98 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHH
Q psy2764 89 NHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~ 105 (419)
+++++.+|+|+|||+.+
T Consensus 112 ~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL 128 (270)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 68999999999999763
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.17 E-value=0.26 Score=51.69 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
...|+++.||+|+|||.++......+
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999998755554433
No 405
>KOG0733|consensus
Probab=94.17 E-value=0.48 Score=47.05 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=34.2
Q ss_pred ccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHH
Q psy2764 40 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~ 105 (419)
.+|..+|.+ .|--..++ ..| .+...+|.+ +|-+.+++-. ..-.-+++++|+|||||+.+
T Consensus 504 tVPdVtW~d-IGaL~~vR---~eL-~~aI~~PiK-~pd~~k~lGi-~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 504 TVPDVTWDD-IGALEEVR---LEL-NMAILAPIK-RPDLFKALGI-DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred ecCCCChhh-cccHHHHH---HHH-HHHHhhhcc-CHHHHHHhCC-CCCCceEEeCCCCccHHHHH
Confidence 567889999 54434443 222 223333432 3334343321 23568999999999999753
No 406
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.26 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=18.0
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+|+.||.|+|||.++......+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998866555444
No 407
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.08 E-value=0.11 Score=48.91 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=38.6
Q ss_pred cHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2764 75 DVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 129 (419)
Q Consensus 75 ~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~ 129 (419)
++.+.+.+..+ ..+.+++++++||+|||...- .+........+++++-.+.||.
T Consensus 164 ~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 164 PPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccCCCCCcEEEECCcceec
Confidence 55666666654 567899999999999997532 2333445567788888887873
No 408
>PRK13695 putative NTPase; Provisional
Probab=94.08 E-value=2.6 Score=35.41 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeE
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRT 119 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~ 119 (419)
.+.+.++.|+|||+.+...+..+...+.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 578999999999987655443443334443
No 409
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.08 E-value=0.21 Score=45.21 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=70.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHHhccccc---eEecccee---------
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQI--------- 152 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~~--------- 152 (419)
..|.-+++.|+||.|||..++-.+..+... +..++++..- --..++..++-.....+. +..|....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE-m~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE-MSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS-S-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC-CCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 356789999999999998766665555444 5888888742 223344444433322211 11121100
Q ss_pred ---cCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCC----cchHHHHHHHHhcC-----CCCcEEE
Q psy2764 153 ---NTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDS----ERGHVWEEVLILLP-----KEVCIVM 215 (419)
Q Consensus 153 ---~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~----~~~~~~~~i~~~~~-----~~~~~l~ 215 (419)
-....+.| .|++.+.+.+..-.....++++||||=.|.+... .....+..+...+. .++.+++
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 00122222 2555665544432222267899999999988553 23344444443332 2677777
Q ss_pred Eeee
Q psy2764 216 LSAT 219 (419)
Q Consensus 216 ~SAT 219 (419)
+|-.
T Consensus 176 ~sQl 179 (259)
T PF03796_consen 176 LSQL 179 (259)
T ss_dssp EEEB
T ss_pred cccc
Confidence 6654
No 410
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.07 E-value=0.069 Score=48.17 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH 115 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~ 115 (419)
...=++|.+|||||||+..+..|-.+.+.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 44578999999999998755445555443
No 411
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.06 E-value=0.16 Score=51.17 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
.+|+.+.++||+|||||+.+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 58999999999999999764
No 412
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.04 E-value=0.066 Score=49.80 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=28.4
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
+..+.++++++|||||||+..-. +........+++.+-.+.++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~a-l~~~~~~~~~iv~ied~~El 183 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKS-LVDEIPKDERIITIEDTREI 183 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHH-HHccCCccccEEEEcCcccc
Confidence 35789999999999999986322 33333445566666544443
No 413
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.01 E-value=0.17 Score=43.43 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=37.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhc----------CCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQN----------HKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~----------~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
.|.-+++.||+|+|||...+..+..+.. .+.+++++..-.. ..++.+++.+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~ 95 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQD 95 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhcc
Confidence 6778999999999999876665554433 4567888765544 66788888776543
No 414
>PRK09087 hypothetical protein; Validated
Probab=94.01 E-value=0.26 Score=43.55 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCChhHH
Q psy2764 88 HNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~ 104 (419)
+..+++.||+|+|||..
T Consensus 44 ~~~l~l~G~~GsGKThL 60 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHL 60 (226)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34599999999999965
No 415
>KOG0741|consensus
Probab=94.00 E-value=0.24 Score=48.26 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEE--------EEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEE
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI--------YTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLV 160 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l--------ii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv 160 (419)
+-+++-+|+|+|||+++--.-..+..+.++++ |+--+.+=+...+...++-.
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~-------------------- 316 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQ-------------------- 316 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHH--------------------
Q ss_pred EcHHHHHHHHhcCCCCCCCccEEEEeCCccc---------CCCcchHHHHHHHHhcC-----CCCcEEEEe
Q psy2764 161 MTTEILRSMLYRGSDVLRDLEYVIFDEVHYI---------NDSERGHVWEEVLILLP-----KEVCIVMLS 217 (419)
Q Consensus 161 ~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l---------~~~~~~~~~~~i~~~~~-----~~~~~l~~S 217 (419)
+....-..+..+|+||+|.+ ...-....+..+++.+- .++=+|+||
T Consensus 317 -----------r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT 376 (744)
T KOG0741|consen 317 -----------RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT 376 (744)
T ss_pred -----------HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEecc
No 416
>PRK05748 replicative DNA helicase; Provisional
Probab=93.99 E-value=0.3 Score=48.13 Aligned_cols=134 Identities=19% Similarity=0.173 Sum_probs=70.8
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEecccee--------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQI-------- 152 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~~-------- 152 (419)
+..|.-+++.|+||+|||..++-.+.... +.+..++++. ...-..|+..++......+. +..|....
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~ 278 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTI 278 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 35667899999999999986555544433 4466676654 44556677777654333211 11222110
Q ss_pred ----cCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-----chHHHHHHHHhcC-----CCCcE
Q psy2764 153 ----NTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-----RGHVWEEVLILLP-----KEVCI 213 (419)
Q Consensus 153 ----~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-----~~~~~~~i~~~~~-----~~~~~ 213 (419)
-.+.++.| .|++.+...+.+-.....++++||||=.+.+.... +...+..+.+.++ -++.+
T Consensus 279 a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~v 358 (448)
T PRK05748 279 AMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPV 358 (448)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeE
Confidence 01233444 24455544332211111268899999999874221 2223334444332 25666
Q ss_pred EEEeee
Q psy2764 214 VMLSAT 219 (419)
Q Consensus 214 l~~SAT 219 (419)
+++|-.
T Consensus 359 i~lsQl 364 (448)
T PRK05748 359 IALSQL 364 (448)
T ss_pred EEeccc
Confidence 666543
No 417
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.97 E-value=0.11 Score=51.46 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 74 LDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 74 ~~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
+.+-|.+.+..+. .+.-+++++|||||||+.....+..+......++.+--
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED 278 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVED 278 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC
Confidence 3677888877663 33468899999999998643333333333445555443
No 418
>KOG1001|consensus
Probab=93.95 E-value=0.23 Score=50.84 Aligned_cols=88 Identities=9% Similarity=0.065 Sum_probs=63.9
Q ss_pred CCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC-----
Q psy2764 328 LPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI----- 401 (419)
Q Consensus 328 ~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l----- 401 (419)
.+++||+.-..-+.-+...|...++......+.+ ...|.+.+..|.++.. ..-.+++..+..-|+..-.++.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~--~~vll~Slkag~~glnlt~a~~v~~~d 617 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPL--VTALLMSLKAGKVGLNLTAASHVLLMD 617 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCcc--HHHHHHHHHHhhhhhchhhhhHHHhhc
Confidence 3799999988888888888887777766655555 7789999999984333 2234667788888888766653
Q ss_pred ----ChhhHHHHHHHHhcCc
Q psy2764 402 ----LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 ----~~~~r~~ie~~f~~g~ 417 (419)
|..+.+-|.++-+-|.
T Consensus 618 ~~wnp~~eeQaidR~hrigq 637 (674)
T KOG1001|consen 618 PWWNPAVEEQAIDRAHRIGQ 637 (674)
T ss_pred hhcChHHHHHHHHHHHHhcc
Confidence 5667777777776664
No 419
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.95 E-value=0.055 Score=53.70 Aligned_cols=52 Identities=25% Similarity=0.169 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
.++++.||||||||..+ .++.+......+||.=|--+|...+...+++.+..
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~ 96 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYK 96 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCE
Confidence 58999999999999774 45545454557899999999999988888877654
No 420
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.94 E-value=0.31 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
...+.++.||+|+|||.++.....
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHH
Confidence 346999999999999977554443
No 421
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.94 E-value=0.28 Score=41.11 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce--ecCCCcEEEEcH--
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ--INTTASCLVMTT-- 163 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~--~~~~~~Iiv~Tp-- 163 (419)
..-+.|-.-.|=|||++++-........+.+|+|+.=.+--...=...+.+.++++.....+.. .... +. .+
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~-~~---~~~~ 96 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTP-HL---DESE 96 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCC-Cc---CHHH
Confidence 3456667778999999877777788889999999986665422222223333344443332221 1000 00 11
Q ss_pred -HHHHHHHhc--CCCCCCCccEEEEeCCcccCCCcch--HHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 164 -EILRSMLYR--GSDVLRDLEYVIFDEVHYINDSERG--HVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 164 -~~l~~~~~~--~~~~l~~~~~lIiDE~h~l~~~~~~--~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
......+.. ....-..++++|+||+-...+.++- ..+..++..-+++.-+|+..-..|..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~ 161 (178)
T PRK07414 97 KKALQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPES 161 (178)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHH
Confidence 111111111 1122357899999999977665543 33445555556666666665555543
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.92 E-value=0.11 Score=51.58 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=44.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
.|..+++.+|+|+|||+.++..+....+++.+++|+. ..|-..|+..+++.+.-
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~ 315 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGI 315 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCC
Confidence 5579999999999999887766666667788999987 77888999999887753
No 423
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.89 E-value=0.33 Score=45.04 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~ 106 (419)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 479999999999996543
No 424
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.86 E-value=0.033 Score=52.39 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHHHHHHHH---hcCCcEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 76 VFQKQAIIKL---EEHNHVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 76 ~~Q~~ai~~~---~~~~~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
++-.++|+.+ -+|+..+|.||.|+|||++....+..+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4555677765 47899999999999999875444444433
No 425
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.81 E-value=0.15 Score=47.46 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=41.8
Q ss_pred ccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHH
Q psy2764 74 LDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALS 129 (419)
Q Consensus 74 ~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~ 129 (419)
+++.|..-+.. +..+++++++++||||||.. +.++..+.....+++.+--|.++.
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~ 183 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELK 183 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEecccccc
Confidence 36666665554 47889999999999999974 455666667778888888887763
No 426
>KOG1015|consensus
Probab=93.80 E-value=0.27 Score=51.03 Aligned_cols=130 Identities=11% Similarity=0.189 Sum_probs=76.3
Q ss_pred cCCcEEEEcCCCCChhHH---HHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhccc------cceE-eccce----
Q psy2764 87 EHNHVFVTAHTSAGKTVI---AEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETFQD------VGLV-TGDFQ---- 151 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~---~~~~i~~~~~-~~~~~lii~Pt~~L~~q~~~~~~~~~~~------~~~~-~g~~~---- 151 (419)
.|.-+|+.--.|-|||+- |+..++...+ ...++|||+|... +..|+..|.+|... +.+. .+.+.
T Consensus 695 ~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 695 PGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred CCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhccChHH
Confidence 455677777789999974 3333333333 4578999999854 57789999998764 1110 11111
Q ss_pred -------ecCCCcEEEEcHHHHHHHHhcC-------------CCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCC
Q psy2764 152 -------INTTASCLVMTTEILRSMLYRG-------------SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211 (419)
Q Consensus 152 -------~~~~~~Iiv~Tp~~l~~~~~~~-------------~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~ 211 (419)
+....-|.|.-++++..+.... ...-...++||.||+|.+-+. ...+...+..+...+
T Consensus 774 R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtkR 851 (1567)
T KOG1015|consen 774 RSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKR 851 (1567)
T ss_pred HHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhhe
Confidence 1122456666666554332211 112345789999999988542 234445555555434
Q ss_pred cEEEEeeec
Q psy2764 212 CIVMLSATV 220 (419)
Q Consensus 212 ~~l~~SAT~ 220 (419)
.|++|+|+
T Consensus 852 -RI~LTGTP 859 (1567)
T KOG1015|consen 852 -RIILTGTP 859 (1567)
T ss_pred -eEEeecCc
Confidence 46777775
No 427
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.78 E-value=0.15 Score=44.99 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=40.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
.|..+++.+++|+|||..+...+......+.+++++.- .+-.+|+.+++..+.-
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGW 68 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCC
Confidence 46789999999999997655555555556788888764 4567888888877643
No 428
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.75 E-value=0.19 Score=45.50 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=25.3
Q ss_pred cHHHHHHH----HHHhcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 75 DVFQKQAI----IKLEEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 75 ~~~Q~~ai----~~~~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
++..++.. ..+..+.++++.+|+|+|||.++....
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 44444444 445688999999999999998765443
No 429
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.74 E-value=0.1 Score=45.14 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKAL 128 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L 128 (419)
-+++++|||||||+.....+..+.. .+.+++.+--..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc
Confidence 4789999999999875443334432 34566666655443
No 430
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.73 E-value=0.1 Score=46.16 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=29.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCC------CeEEEEcccH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHK------TRTIYTSPIK 126 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~------~~~lii~Pt~ 126 (419)
.|.-+.+.+|+|+|||..+...+......+ ..++++..-.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 467899999999999987665555544454 7788887643
No 431
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.34 Score=49.40 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=18.9
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+|+.||.|+|||+++......+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999998766555443
No 432
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.65 E-value=0.23 Score=43.92 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~ 130 (419)
.+|++.-+|+|+|||.. ...+.+...--++.+-.-+|+-
T Consensus 151 PknVLFyGppGTGKTm~----Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 151 PKNVLFYGPPGTGKTMM----AKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred cceeEEECCCCccHHHH----HHHHhcccCCceEEechHHHHH
Confidence 37999999999999954 3444444444455554445543
No 433
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.61 E-value=0.0089 Score=50.19 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=49.3
Q ss_pred cCCCCEEEEEcchhhHHHHHHHhhcCCC----CChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHH--HHhhhhhhcc
Q psy2764 325 SQNLPVVLFTLSRKRCDQNAANLLSMDF----STATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ--LLKNGIGVHH 398 (419)
Q Consensus 325 ~~~~~~LIF~~t~~~~~~l~~~L~~~~~----~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~--~l~~GIDi~~ 398 (419)
...+.+|||++|.+..+.+...+...+. ...... ...+.+.+++|+++.. .+++++. .+.+|||+++
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~~~~~~~----~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQG---SKSRDELLEEFKRGEG----AILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEEST---CCHHHHHHHHHCCSSS----EEEEEETTSCCGSSS--EC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecC---cchHHHHHHHHHhccC----eEEEEEecccEEEeecCCC
Confidence 3346699999999999999999987642 211111 3356788999998777 7888888 8999999986
Q ss_pred CC
Q psy2764 399 SG 400 (419)
Q Consensus 399 ~~ 400 (419)
..
T Consensus 80 ~~ 81 (167)
T PF13307_consen 80 DL 81 (167)
T ss_dssp ES
T ss_pred ch
Confidence 44
No 434
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.60 E-value=0.38 Score=42.55 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHhcCC-cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2764 84 KLEEHN-HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 133 (419)
Q Consensus 84 ~~~~~~-~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~ 133 (419)
.+..++ -+.++++.|||||...- ++......+..++++.|-..+..+..
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~~ 95 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDATL 95 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHHH
Confidence 344555 88999999999998755 45555566666666666555544443
No 435
>PRK08760 replicative DNA helicase; Provisional
Probab=93.56 E-value=0.35 Score=47.90 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=70.0
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEecccee--------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQI-------- 152 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~~-------- 152 (419)
+..|.-++|.|.||+|||..++-.+... .+.+..++|.. ...-..|+..++......+. +..|....
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fS-lEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~ 304 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFS-MEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTG 304 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEe-ccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHH
Confidence 4567788999999999997655444433 34466676664 33445677777765543311 12222110
Q ss_pred ----cCCCcEEEE-----cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCC----cchHHHHHHHHhcC-----CCCcEE
Q psy2764 153 ----NTTASCLVM-----TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDS----ERGHVWEEVLILLP-----KEVCIV 214 (419)
Q Consensus 153 ----~~~~~Iiv~-----Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~----~~~~~~~~i~~~~~-----~~~~~l 214 (419)
-.+..+.|. |++.+...+.+-.. -..+++||||=.+.+... .+...+..+.+.++ -++.++
T Consensus 305 a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 383 (476)
T PRK08760 305 AIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVI 383 (476)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEE
Confidence 011334332 45555443322111 135789999999977422 22233444443332 256666
Q ss_pred EEe
Q psy2764 215 MLS 217 (419)
Q Consensus 215 ~~S 217 (419)
++|
T Consensus 384 ~ls 386 (476)
T PRK08760 384 ALS 386 (476)
T ss_pred Eee
Confidence 665
No 436
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.51 E-value=0.32 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
-+|+.||.|+|||.++......+
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999998865554444
No 437
>CHL00176 ftsH cell division protein; Validated
Probab=93.51 E-value=0.61 Score=47.82 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
+.+++.+|+|+|||+.+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57999999999999764443
No 438
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.49 E-value=0.21 Score=47.60 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=60.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccc-cceEeccceecCCCcEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD-VGLVTGDFQINTTASCLVMT 162 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~g~~~~~~~~~Iiv~T 162 (419)
-.+.++++.++||+||++.+...=....+ .++.+- +.--++.+..... . +|+. -|.++|.....
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~--~NCa~~~en~~~~-e-LFG~~kGaftGa~~~k--------- 165 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIA--FNCAAYSENLQEA-E-LFGHEKGAFTGAQGGK--------- 165 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEE--EEHHHhCcCHHHH-H-HhccccceeecccCCc---------
Confidence 47899999999999999875443222222 233332 2333333222221 1 5543 45666632211
Q ss_pred HHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh-----cC----CCCcEEEEeeecCChHH
Q psy2764 163 TEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL-----LP----KEVCIVMLSATVPNTLE 225 (419)
Q Consensus 163 p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~-----~~----~~~~~l~~SAT~~~~~~ 225 (419)
++.+ -..+=+.+.+||+|.+...+....+. ++.. ++ ....+-..+||-.+..+
T Consensus 166 ~Glf---------e~A~GGtLfLDEI~~LP~~~Q~kLl~-~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~ 227 (403)
T COG1221 166 AGLF---------EQANGGTLFLDEIHRLPPEGQEKLLR-VLEEGEYRRVGGSQPRPVDVRLICATTEDLEE 227 (403)
T ss_pred Cchh---------eecCCCEEehhhhhhCCHhHHHHHHH-HHHcCceEecCCCCCcCCCceeeeccccCHHH
Confidence 1111 11233589999999986544333332 2222 11 23445566777655443
No 439
>PRK06904 replicative DNA helicase; Validated
Probab=93.48 E-value=0.57 Score=46.32 Aligned_cols=133 Identities=20% Similarity=0.212 Sum_probs=71.6
Q ss_pred HHhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhcccc---ceEec-cce-------
Q psy2764 84 KLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDV---GLVTG-DFQ------- 151 (419)
Q Consensus 84 ~~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~---~~~~g-~~~------- 151 (419)
-+..|.-+++.|.||.|||..++-.+... ...+..++|.. ..--..|+..++-.....+ .+..| ...
T Consensus 217 Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS-lEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~ 295 (472)
T PRK06904 217 GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS-LEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKI 295 (472)
T ss_pred ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe-ccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHH
Confidence 34667788899999999997554333333 33466677664 4455667777665544331 11222 111
Q ss_pred ------ecCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc----chHHHHHHHHhcC-----CCC
Q psy2764 152 ------INTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE----RGHVWEEVLILLP-----KEV 211 (419)
Q Consensus 152 ------~~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~----~~~~~~~i~~~~~-----~~~ 211 (419)
.....++.| .|+..+.....+-...-..+++||||=.+.+...+ +...+..+.+.++ -++
T Consensus 296 ~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~i 375 (472)
T PRK06904 296 SSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKV 375 (472)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 111233444 35555544332211111257899999999875322 2223444444332 367
Q ss_pred cEEEEe
Q psy2764 212 CIVMLS 217 (419)
Q Consensus 212 ~~l~~S 217 (419)
.++++|
T Consensus 376 pVi~ls 381 (472)
T PRK06904 376 PVVALS 381 (472)
T ss_pred eEEEEE
Confidence 777776
No 440
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.47 E-value=0.21 Score=46.96 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
.++++.||+|+|||..+...
T Consensus 52 ~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 58999999999999765433
No 441
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=93.45 E-value=0.19 Score=51.48 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=44.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHH--HHHHHHHHHHHhccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA--LSNQKYRDFRETFQD 142 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~--L~~q~~~~~~~~~~~ 142 (419)
...++++.|+||+|||..+...+....+.+..++++=|-.. |...+...+++.+..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 45799999999999998876777777777888888888754 777777777776544
No 442
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.44 E-value=0.36 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=17.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.||.|+|||..+......+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999998765554444
No 443
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.39 E-value=1 Score=42.28 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=26.1
Q ss_pred cHHHHHHHHHH----hcCC---cEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 75 DVFQKQAIIKL----EEHN---HVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 75 ~~~Q~~ai~~~----~~~~---~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
+|+|..++..+ .+++ -.++.||.|.||+..+......+..
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34555555443 3443 7789999999999876665554433
No 444
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.34 E-value=0.6 Score=49.11 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCChhHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~ 107 (419)
.++.+++.||+|+|||+.+-.
T Consensus 211 ~~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CCceEEEECCCCCChHHHHHH
Confidence 457899999999999976433
No 445
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.33 E-value=0.092 Score=50.52 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=34.9
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
...+++++.|.||||||.+.-..+..+..++.++||.=|.-+.....++
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH--
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhcC
Confidence 4568999999999999986555566677778888888888887665555
No 446
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.32 E-value=0.93 Score=42.43 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=23.8
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
-+-+.++.|+|||+.....+..+...+.++.++.
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5788999999999876655555555455554444
No 447
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.30 E-value=0.44 Score=44.73 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCChhHHHH
Q psy2764 76 VFQKQAIIKLEEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 76 ~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~ 106 (419)
....++-.....+..|++.|++|+||+.++-
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr 40 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAA 40 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHH
Confidence 3455555555778899999999999997643
No 448
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.27 E-value=0.36 Score=46.51 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.||+|+|||+.+-..
T Consensus 165 p~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CCceEEECCCCCChHHHHHHH
Confidence 468999999999999764443
No 449
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.26 E-value=0.14 Score=44.59 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=30.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
.|.-+.+.+|+|+|||..+...+......+.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 567899999999999987766555555667888888764
No 450
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.21 E-value=0.077 Score=51.55 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=36.6
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 133 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~ 133 (419)
...+++++.|+||+|||......+..+...+.+++|+=|..++....+
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~~~ 87 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFY 87 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHhhc
Confidence 456799999999999997643345555666788999999988765543
No 451
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.18 E-value=0.14 Score=47.38 Aligned_cols=88 Identities=19% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH--
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI-- 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~-- 165 (419)
|+-+-+.+|+|+|||..++..+...++.+..+++|-+-.+|-......+ +- +. .+++|..|+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l---Gv---------dl---~rllv~~P~~~E 117 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL---GV---------DL---DRLLVVQPDTGE 117 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT---T-----------G---GGEEEEE-SSHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc---Cc---------cc---cceEEecCCcHH
Confidence 5677899999999999888778778888999999999888876655544 11 11 2466665632
Q ss_pred -HHHHHhcCCCCCCCccEEEEeCCccc
Q psy2764 166 -LRSMLYRGSDVLRDLEYVIFDEVHYI 191 (419)
Q Consensus 166 -l~~~~~~~~~~l~~~~~lIiDE~h~l 191 (419)
.+..... ...-..++++|+|=+-.+
T Consensus 118 ~al~~~e~-lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 118 QALWIAEQ-LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHH-HHHTTSESEEEEE-CTT-
T ss_pred HHHHHHHH-HhhcccccEEEEecCccc
Confidence 2111111 001234679999987765
No 452
>PRK07004 replicative DNA helicase; Provisional
Probab=93.17 E-value=0.29 Score=48.20 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=68.7
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEeccce---------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQ--------- 151 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~--------- 151 (419)
+..|.-+++.|.+|+|||..++-.+... .+.+..+++.. ..--..|+..++-.....+. +..|...
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fS-lEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~ 288 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFS-MEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTH 288 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEe-CCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 3567788999999999997655444333 34566676664 33445555555543322211 1122211
Q ss_pred ---ecCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc----chHHHHHHHHhcC-----CCCcEE
Q psy2764 152 ---INTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE----RGHVWEEVLILLP-----KEVCIV 214 (419)
Q Consensus 152 ---~~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~----~~~~~~~i~~~~~-----~~~~~l 214 (419)
.-.+.++.| .|+..+.....+-......+++||||=.+.+.... +...+..+.+.++ -++.++
T Consensus 289 a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 289 AVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 001234544 34544444332211112357899999999885322 2223444444333 367777
Q ss_pred EEe
Q psy2764 215 MLS 217 (419)
Q Consensus 215 ~~S 217 (419)
++|
T Consensus 369 ~ls 371 (460)
T PRK07004 369 ALS 371 (460)
T ss_pred EEe
Confidence 766
No 453
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.14 E-value=1.4 Score=41.85 Aligned_cols=106 Identities=10% Similarity=0.152 Sum_probs=47.6
Q ss_pred EEEcCCCCChhHHHHHHHH-HHhcCCC-eEEEEcccHHHHHHH-H---HHHHHhccc-cce-Ee--ccc--eecCCCcEE
Q psy2764 92 FVTAHTSAGKTVIAEYAIA-LSQNHKT-RTIYTSPIKALSNQK-Y---RDFRETFQD-VGL-VT--GDF--QINTTASCL 159 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~-~~~~~~~-~~lii~Pt~~L~~q~-~---~~~~~~~~~-~~~-~~--g~~--~~~~~~~Ii 159 (419)
++.++.|+|||.+....+. .+....+ +.++++||..-+.+. . ..+...... ... .. .+. ....+..|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i~ 80 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIILPNGSRIQ 80 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEecCceEEE
Confidence 5788999999987555433 3333332 444444666655553 2 233333333 111 11 111 123445565
Q ss_pred EEcHHH---HHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHH
Q psy2764 160 VMTTEI---LRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203 (419)
Q Consensus 160 v~Tp~~---l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i 203 (419)
+.+-+. ...+. + ..++++++||+-.+.+..+...+...
T Consensus 81 ~~~~~~~~~~~~~~--G----~~~~~i~iDE~~~~~~~~~~~~~~~~ 121 (384)
T PF03237_consen 81 FRGADSPDSGDNIR--G----FEYDLIIIDEAAKVPDDAFSELIRRL 121 (384)
T ss_dssp EES-----SHHHHH--T----S--SEEEEESGGGSTTHHHHHHHHHH
T ss_pred Eecccccccccccc--c----cccceeeeeecccCchHHHHHHHHhh
Confidence 555321 11111 2 46789999999887654444444333
No 454
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.12 E-value=0.54 Score=47.99 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~ 107 (419)
+-+++.||+|+|||.++-+
T Consensus 111 ~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKI 129 (637)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4499999999999976433
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.07 E-value=0.15 Score=45.10 Aligned_cols=36 Identities=11% Similarity=0.244 Sum_probs=25.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
-+++++|++|||||......+....+....+++++|
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 488999999999998655555444455566666666
No 456
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.04 E-value=0.14 Score=44.93 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.|.-+++.+++|+|||..+...+......+.+++++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578899999999999887666666666788898884
No 457
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.00 E-value=0.48 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+++.||.|+|||.++......+
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999998766555444
No 458
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.99 E-value=0.65 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=18.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+|+.||.|+|||.++......+.
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999997655554443
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.98 E-value=0.18 Score=47.71 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=29.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALS 129 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L~ 129 (419)
..+..++++||||||||+.....+..+.. .+.+++.+-...|+.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV 164 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh
Confidence 35679999999999999874333333332 346677776655543
No 460
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.95 E-value=0.16 Score=34.42 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~ 105 (419)
.|...++.+|+|+|||.+.
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3458999999999999874
No 461
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.90 E-value=0.34 Score=41.01 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
.+.+.+++++||--.-+|......+..++..+..+.-+++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 456778999999997777665555555555554444444433
No 462
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.88 E-value=0.56 Score=46.04 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=68.7
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEecccee--------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQI-------- 152 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~~-------- 152 (419)
+..|.-+++.|+||+|||..++-.+... .+.+..++++. ...-..|+..++......+. +..|....
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S-lEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~ 270 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS-LEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTS 270 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHH
Confidence 3467788999999999997655444443 33466677765 44455566666554433211 11121110
Q ss_pred ----cCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc----chHHHHHHHHhcC-----CCCcEE
Q psy2764 153 ----NTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE----RGHVWEEVLILLP-----KEVCIV 214 (419)
Q Consensus 153 ----~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~----~~~~~~~i~~~~~-----~~~~~l 214 (419)
-.+..+.| .|++.+...+..-... ..+++||||=.+.+.... +...+..+.+.+. .++.++
T Consensus 271 a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi 349 (434)
T TIGR00665 271 AAGKLSEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVI 349 (434)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 01123433 2445554433221111 247899999998774322 2223434433332 356666
Q ss_pred EEee
Q psy2764 215 MLSA 218 (419)
Q Consensus 215 ~~SA 218 (419)
++|-
T Consensus 350 ~lsq 353 (434)
T TIGR00665 350 ALSQ 353 (434)
T ss_pred EEec
Confidence 6663
No 463
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=92.88 E-value=0.16 Score=44.93 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKA 127 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~ 127 (419)
.+++.|.|.||||||......+-.+. +.+..++|+=|.-|
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 47999999999999987555565666 77778888877755
No 464
>KOG2004|consensus
Probab=92.87 E-value=0.38 Score=48.68 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHH--------hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccce
Q psy2764 74 LDVFQKQAIIKL--------EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL 145 (419)
Q Consensus 74 ~~~~Q~~ai~~~--------~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~ 145 (419)
+..+-.+.+..+ .+|+-+..++|+|-|||-++--....+.++..|. .+|.
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf----------------------SvGG 473 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF----------------------SVGG 473 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE----------------------eccc
Confidence 466667766654 3678999999999999955322221221111110 0222
Q ss_pred EeccceecCCC-cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 146 VTGDFQINTTA-SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 146 ~~g~~~~~~~~-~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
++....+.... .-|=+.|+++...+..-... --++.+||+|.+.....+.--..++..+
T Consensus 474 ~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 474 MTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred cccHHhhcccceeeeccCChHHHHHHHhhCCC---CceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 22111222222 23345699998877653321 1379999999998544555555555544
No 465
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.86 E-value=0.71 Score=49.20 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
...++++.||+|+|||.++......+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44699999999999998765544433
No 466
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.85 E-value=0.49 Score=49.14 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~----~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
+++-|.+|+... ...++|.|.-|||||.+...-+..+... ..+++.+.=|+..|.++.+++.++.+.
T Consensus 3 Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~ 73 (655)
T COG0210 3 LNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGL 73 (655)
T ss_pred CCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCc
Confidence 689999999764 6789999999999999866656655443 356999999999999999999998763
No 467
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.85 E-value=0.24 Score=46.04 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=55.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHH--
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTE-- 164 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~-- 164 (419)
.|.-+.+.+|+|+|||..++..+...++.+.+++++-.-..+-.+ .++++.-+. .++++..|.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~------------~~l~v~~p~~~ 118 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI------------DNLLVSQPDTG 118 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH------------HHeEEecCCCH
Confidence 557889999999999998777777777788889988665544443 233332111 123344432
Q ss_pred -HHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 165 -ILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 165 -~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
.....+.. ...-..+++||||-+-.+.
T Consensus 119 eq~l~~~~~-li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 119 EQALEIAET-LVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHHHHHHHH-HhhccCCcEEEEcchhhhc
Confidence 22222211 0112367899999988664
No 468
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.73 E-value=0.11 Score=51.22 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=55.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc--cceEeccceecCCCcEEEEcHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
-.+.++|-|+|||.++-..+..+..... |+-+-|.+.... +....+ +.++ .++.-.+--|--...+.
T Consensus 40 AYlfsG~RGvGKTt~Ari~AkalNC~~~------~~~ePC~~C~~C-k~I~~g~~~Dvi----EiDaASn~gVddiR~i~ 108 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAKALNCENG------PTAEPCGKCISC-KEINEGSLIDVI----EIDAASNTGVDDIREII 108 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHHHhcCCCC------CCCCcchhhhhh-HhhhcCCcccch----hhhhhhccChHHHHHHH
Confidence 6788999999999876665555544433 444444443322 221111 1110 00111111111112222
Q ss_pred HHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC-CCcEEEEeee
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-EVCIVMLSAT 219 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~-~~~~l~~SAT 219 (419)
.-.... -.-.+.+++||||+|++.... ...++..+.. ...+++.=||
T Consensus 109 e~v~y~-P~~~ryKVyiIDEvHMLS~~a----fNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 109 EKVNYA-PSEGRYKVYIIDEVHMLSKQA----FNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred HHhccC-CccccceEEEEecHHhhhHHH----HHHHhcccccCccCeEEEEec
Confidence 222222 234578999999999986543 4455555542 2334444455
No 469
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.71 E-value=0.7 Score=43.45 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=25.1
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEee
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSA 218 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SA 218 (419)
.....+++||||+|.+... -...+.+.+...+++..+++.|.
T Consensus 107 ~~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 107 VESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 3456789999999988542 23333344444445566666443
No 470
>PRK13764 ATPase; Provisional
Probab=92.69 E-value=0.18 Score=50.95 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=28.5
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
..++++++++|||||||+.+...+..+...+..++.+--.+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccc
Confidence 4578999999999999986544443444444444455555555
No 471
>PHA02542 41 41 helicase; Provisional
Probab=92.67 E-value=0.55 Score=46.33 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=33.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
.|.-+++.|++|.|||..++-.+......+..|+++. .-.-..|+..++..
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS-LEM~~~ql~~Rl~a 239 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS-MEMAEEVIAKRIDA 239 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe-ccCCHHHHHHHHHH
Confidence 4567888999999999876655554445677777764 22333455555543
No 472
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.67 E-value=0.13 Score=52.07 Aligned_cols=56 Identities=16% Similarity=-0.017 Sum_probs=43.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 144 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~ 144 (419)
...++++.||||||||.. +.+|.+..-+.-+||+=|--|+...+....++.+..|-
T Consensus 157 g~~hvLviapTgSGKg~g--~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~ 212 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVG--FVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVF 212 (606)
T ss_pred CCceEEEEcCCCCCcceE--EehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEE
Confidence 346899999999999976 55565555567799999999999999888877644443
No 473
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.65 E-value=0.32 Score=40.87 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=24.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+++.+++|+|||..+......+...+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999987666666656666666655
No 474
>KOG1806|consensus
Probab=92.61 E-value=0.21 Score=52.05 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH--HHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~--~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
++|-|-+||..-.......+++|+|+|||-.+.-.+. ....+..+++|++.+..-.+|.++.+.+.--
T Consensus 739 ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~ 808 (1320)
T KOG1806|consen 739 FTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDV 808 (1320)
T ss_pred cCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhccc
Confidence 4889999998888889999999999999987655544 3344678999999999999999999887643
No 475
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=0.66 Score=43.20 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=19.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
...++.||.|+||+..+...+..+.
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4899999999999987655544443
No 476
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.55 E-value=0.55 Score=39.77 Aligned_cols=41 Identities=7% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEee
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLSA 218 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~SA 218 (419)
.+.+++++||...-++......+..++..+. .+.+++..|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 5678999999998777665555555554443 3466666543
No 477
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.49 E-value=0.59 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
.+.+.+++++||--.-+|......+..++..+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 45577899999999777766666666666655
No 478
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.45 E-value=1.8 Score=37.40 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc---ccHHHHHHHHHHHHHhccccc--eEeccceecC-CCcEEEE
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS---PIKALSNQKYRDFRETFQDVG--LVTGDFQINT-TASCLVM 161 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~---Pt~~L~~q~~~~~~~~~~~~~--~~~g~~~~~~-~~~Iiv~ 161 (419)
|.=+++-++.|+|||....-.+.-.+.++.++.+++ ++|+...| +..+.-++. ++.|....-+ +..=+..
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~q----m~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQ----MESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHH----HHhcCCCchHHHhcceeEEEEeccccccc
Confidence 457889999999999876666666677888888876 44444444 333322210 1111111000 0000011
Q ss_pred c---HHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHH---hcCCCCcEEEEeeecC
Q psy2764 162 T---TEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLI---LLPKEVCIVMLSATVP 221 (419)
Q Consensus 162 T---p~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~---~~~~~~~~l~~SAT~~ 221 (419)
. -..+++.+.... ...+-+++|+|-...+........+..++. .+...-+++.+|+-+.
T Consensus 104 ~~~~~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 104 GRRSARKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred ChHHHHHHHHHHHhhH-HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence 1 123333332221 255678999999997754332222333333 3345788999999875
No 479
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.44 E-value=0.24 Score=40.86 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=28.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
+.+++++|+|||......+..+...+.++.++-+.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 56889999999988777777776777788888764
No 480
>PRK09165 replicative DNA helicase; Provisional
Probab=92.44 E-value=0.87 Score=45.39 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=57.7
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc---------------CCCeEEEEcccHHHHHHHHHHHHHhcccc---ceEe
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN---------------HKTRTIYTSPIKALSNQKYRDFRETFQDV---GLVT 147 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~---------------~~~~~lii~Pt~~L~~q~~~~~~~~~~~~---~~~~ 147 (419)
..|.-+++.|+||+|||..++-.+..... .+..++|+. ...-..|+..++......+ .+..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s~v~~~~i~~ 293 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQSEISSSKIRR 293 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHHhc
Confidence 45678899999999999765544333321 245666664 5555677777775543332 1122
Q ss_pred cccee------------cCCCcEEEE-----cHHHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 148 GDFQI------------NTTASCLVM-----TTEILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 148 g~~~~------------~~~~~Iiv~-----Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
|.... -.+.++.|. |++.+...+.+-.. -..+++||||=.+.+.
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 21110 011234332 45555443332111 1358899999999774
No 481
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.42 E-value=0.25 Score=39.86 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
++++.+|+|+|||..+......+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999998755544444
No 482
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=1 Score=41.88 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=32.6
Q ss_pred cccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHH--hcCCcEEEEcCCCCChhHHH
Q psy2764 41 VTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~--~~~~~~iv~apTGsGKT~~~ 105 (419)
.|..++.+.-||..++..+.+.+. .|.. +-+.+..+ ..-+-|++-+|+|+|||+++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VE-----LPL~----~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVE-----LPLK----NPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhc-----cccc----CHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 345666666667666654444331 1211 11222222 35689999999999999753
No 483
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=92.42 E-value=0.36 Score=49.03 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=43.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH--HHHHHHHHHHHHhcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK--ALSNQKYRDFRETFQ 141 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~--~L~~q~~~~~~~~~~ 141 (419)
...+.+|.|+||+|||..+.+.+....+.+..++++=|-. ++...++..+++.+.
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4579999999999999988887777778888888888876 466666666666554
No 484
>PRK05636 replicative DNA helicase; Provisional
Probab=92.41 E-value=0.45 Score=47.34 Aligned_cols=130 Identities=16% Similarity=0.199 Sum_probs=64.7
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEeccce----------
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQ---------- 151 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~---------- 151 (419)
..|.-+++.|.||+|||..++-.+... .+.+..+++. ...--..|+..++-.....+. +..|...
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~f-SlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a 341 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIF-SLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQR 341 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE-EeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 456677889999999997655444332 3445666665 333344555555543322211 1112110
Q ss_pred --ecCCCcEEEE-----cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc----chHHHHHHHHhcC-----CCCcEEE
Q psy2764 152 --INTTASCLVM-----TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE----RGHVWEEVLILLP-----KEVCIVM 215 (419)
Q Consensus 152 --~~~~~~Iiv~-----Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~----~~~~~~~i~~~~~-----~~~~~l~ 215 (419)
.-.+..+.|. |...+.....+-.. -..+++||||=.|.+.... +...+..+.+.++ -++.+++
T Consensus 342 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~ 420 (505)
T PRK05636 342 LGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIA 420 (505)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0012334432 33344333322111 1358899999999885321 2223333433332 2677777
Q ss_pred Ee
Q psy2764 216 LS 217 (419)
Q Consensus 216 ~S 217 (419)
+|
T Consensus 421 ls 422 (505)
T PRK05636 421 IS 422 (505)
T ss_pred Ee
Confidence 76
No 485
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.35 E-value=0.35 Score=43.19 Aligned_cols=117 Identities=10% Similarity=0.108 Sum_probs=62.6
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc----c-cH-HHHHHHHHHHHHhccc-------cceEecccee
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS----P-IK-ALSNQKYRDFRETFQD-------VGLVTGDFQI 152 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~----P-t~-~L~~q~~~~~~~~~~~-------~~~~~g~~~~ 152 (419)
.+|+.+-+++++|||||+.+-..+-........+++=- . .+ +..+.+.+.+...... -.-++|+..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr- 115 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR- 115 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh-
Confidence 58999999999999999875444433332333333320 0 12 2223333333332211 011222221
Q ss_pred cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC--CCcEEEEee
Q psy2764 153 NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK--EVCIVMLSA 218 (419)
Q Consensus 153 ~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~--~~~~l~~SA 218 (419)
+++. -.+...-+.+++|.||.-..+|..-+..+-.++..++. +.-.++.|=
T Consensus 116 -----------QRi~----IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsH 168 (268)
T COG4608 116 -----------QRIG----IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168 (268)
T ss_pred -----------hhHH----HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 1111 00112335679999999999888777777777766553 455555543
No 486
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.34 E-value=0.6 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=18.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.+++.||.|+|||.++......+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 478999999999987665554443
No 487
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=92.32 E-value=0.51 Score=49.65 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+..+++.+|+|+|||..+-...
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia 370 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIA 370 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 46789999999999997644433
No 488
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.27 E-value=0.3 Score=45.44 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=56.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH---
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT--- 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp--- 163 (419)
.|+-+.+.+|+|+|||..++..+...+..+.+++++-+-..+-.+. ++++.-+. .++++..|
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~---a~~lGvd~------------~~l~v~~p~~~ 118 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY---AKKLGVDL------------DNLLISQPDTG 118 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH---HHHcCCCH------------HHheecCCCCH
Confidence 4578899999999999987777777777888999998766655443 33322110 12333333
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+.+...+..- ..-..+++||||=+-.+.
T Consensus 119 eq~l~i~~~l-i~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 119 EQALEIADSL-VRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HHHHHHHHHH-HhccCCCEEEEcchHhhc
Confidence 3333332210 112368899999987654
No 489
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.26 E-value=0.17 Score=51.88 Aligned_cols=53 Identities=26% Similarity=0.155 Sum_probs=41.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
...++++.||||||||.. +.++.+..-...+||+=|--|+...+....++.+.
T Consensus 138 ~~~hvlviApTgSGKgvg--~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~ 190 (670)
T PRK13850 138 EQPHSLVVAPTRAGKGVG--VVIPTLLTFKGSVIALDVKGELFELTSRARKASGD 190 (670)
T ss_pred CCceEEEEecCCCCceee--ehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCC
Confidence 346999999999999977 56666655566789999999998888777766543
No 490
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.16 E-value=0.58 Score=46.75 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~ 107 (419)
.+.+++.+|+|+|||+.+-.
T Consensus 88 ~~giLL~GppGtGKT~la~a 107 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKA 107 (495)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 36799999999999976433
No 491
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.15 E-value=0.25 Score=40.05 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=27.5
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
-+.++++.|||||+....++..+.+++.++.++..+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 478999999999998888888888888888766543
No 492
>PRK08006 replicative DNA helicase; Provisional
Probab=92.12 E-value=0.96 Score=44.69 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=70.1
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEeccce---------
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQ--------- 151 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~--------- 151 (419)
+..|.-+++.|.+|.|||..++-.+... .+.+..++|... .--..|+..++-.....+. +..|...
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSl-EM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~ 299 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSL-EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISG 299 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 4567788889999999997655444433 345666776653 3445666666654432211 1112110
Q ss_pred ----ecCCCcEEE-----EcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCC----cchHHHHHHHHhcC-----CCCcE
Q psy2764 152 ----INTTASCLV-----MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDS----ERGHVWEEVLILLP-----KEVCI 213 (419)
Q Consensus 152 ----~~~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~----~~~~~~~~i~~~~~-----~~~~~ 213 (419)
...+.++.| .|+..+.....+-......+++||||=.|.+... .+...+..+.+.++ -++.+
T Consensus 300 a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 379 (471)
T PRK08006 300 TMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPV 379 (471)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeE
Confidence 102233443 2455444433221111135899999999987422 23333444444433 36777
Q ss_pred EEEe
Q psy2764 214 VMLS 217 (419)
Q Consensus 214 l~~S 217 (419)
+++|
T Consensus 380 i~Ls 383 (471)
T PRK08006 380 VALS 383 (471)
T ss_pred EEEE
Confidence 7776
No 493
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.10 E-value=1.2 Score=47.95 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCChhHHHHH-HHHHH--------------------------------hcCCCeEEEEc
Q psy2764 77 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY-AIALS--------------------------------QNHKTRTIYTS 123 (419)
Q Consensus 77 ~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~-~i~~~--------------------------------~~~~~~~lii~ 123 (419)
-|++.+..+..+-|++--+.|=-=.|+=-.+ .+..+ ..+++++.+|.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 3999999999999999999998888864111 12111 13789999999
Q ss_pred ccHHHHHHHHHHHHHhccc--cceEeccce-----------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc
Q psy2764 124 PIKALSNQKYRDFRETFQD--VGLVTGDFQ-----------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY 190 (419)
Q Consensus 124 Pt~~L~~q~~~~~~~~~~~--~~~~~g~~~-----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~ 190 (419)
|..+-+.++...++.+.+. +++.+|.+. .+.+.+|+|||. +-......++...+||+-||+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPnANTiIIe~AD~ 884 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPNANTIIIERADK 884 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCCCceEEEecccc
Confidence 9999999999999999997 788888764 245699999996 335667889999999999998
Q ss_pred cC
Q psy2764 191 IN 192 (419)
Q Consensus 191 l~ 192 (419)
+.
T Consensus 885 fG 886 (1139)
T COG1197 885 FG 886 (1139)
T ss_pred cc
Confidence 73
No 494
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.03 E-value=1 Score=43.06 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.||+|+|||+.+-..
T Consensus 156 p~gvLL~GppGtGKT~lakai 176 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAV 176 (364)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999764443
No 495
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.02 E-value=0.2 Score=51.28 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=42.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~ 143 (419)
...++++.||||+|||.. +.+|.+..-+.-++|+=|-.|+...+....++....+
T Consensus 223 g~~H~Lv~ApTgsGKt~g--~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V 277 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTS--VVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREV 277 (641)
T ss_pred CCceEEEEeCCCCCccce--EehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeE
Confidence 346999999999999976 6677666666778888899999888877766654443
No 496
>KOG0730|consensus
Probab=92.01 E-value=0.75 Score=46.12 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
..-+-|++-+|.|||||+++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCceEEEECCCCcchHHHH
Confidence 35589999999999999764
No 497
>PRK06321 replicative DNA helicase; Provisional
Probab=92.01 E-value=0.54 Score=46.42 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=68.6
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEeccce----------
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGDFQ---------- 151 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~~~---------- 151 (419)
..|.-+++.|.+|+|||..++-.+... .+.+..+++.. ...-..|+..++......+. +..|...
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fS-LEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 302 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFS-LEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSV 302 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe-ccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 456777889999999997655443333 23456666664 33445566666544322211 1112111
Q ss_pred --ecCCCcEEEE-----cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc-------chHHHHHHHHhcC-----CCCc
Q psy2764 152 --INTTASCLVM-----TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-------RGHVWEEVLILLP-----KEVC 212 (419)
Q Consensus 152 --~~~~~~Iiv~-----Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-------~~~~~~~i~~~~~-----~~~~ 212 (419)
.-.+..+.|- |.+.+...+.+-.. -..+++||||=.+.+...+ +...+..+.+.++ -++.
T Consensus 303 ~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vp 381 (472)
T PRK06321 303 VNEMQEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIP 381 (472)
T ss_pred HHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCc
Confidence 0012345443 44555443332111 1358899999999875321 2223334444333 2677
Q ss_pred EEEEeee
Q psy2764 213 IVMLSAT 219 (419)
Q Consensus 213 ~l~~SAT 219 (419)
++++|-.
T Consensus 382 Vi~lsQL 388 (472)
T PRK06321 382 ILCLSQL 388 (472)
T ss_pred EEEEeec
Confidence 7776653
No 498
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.99 E-value=0.7 Score=43.91 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=64.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp 163 (419)
..+.+.+.|+.|.|||.. +-+.... +.+.| ++-.+...++...+.++.+ +.. - .
T Consensus 61 ~~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~~-------~~~------~----l 117 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTML--MDLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLRG-------QDD------P----L 117 (362)
T ss_pred CCceEEEECCCCCchhHH--HHHHHHhCCcccccc----ccccHHHHHHHHHHHHHhC-------CCc------c----H
Confidence 357899999999999954 3322111 12222 3556777888888877641 100 0 1
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeeecCCh
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSATVPNT 223 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~ 223 (419)
..+... ..+...+|.+||.|.- |.+....+..++..+ ..+.-+++.|-+.|..
T Consensus 118 ~~va~~------l~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 118 PQVADE------LAKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred HHHHHH------HHhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 112111 2345679999999953 445566666666554 4577777777777654
No 499
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.96 E-value=0.26 Score=46.77 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=26.7
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcccHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKAL 128 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~Pt~~L 128 (419)
..+..+++++|||||||+.....+-.+.. .+.+++.+-...++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~ 177 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF 177 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE
Confidence 36789999999999999864333333321 23455555444443
No 500
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.92 E-value=0.43 Score=42.88 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCChhHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~ 107 (419)
.++++.+|+|-|||+.+-.
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 5999999999999976443
Done!