Query psy2764
Match_columns 419
No_of_seqs 248 out of 2371
Neff 10.0
Searched_HMMs 29240
Date Sat Aug 17 00:34:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1E-46 3.4E-51 367.0 26.2 339 10-418 22-394 (434)
2 3l9o_A ATP-dependent RNA helic 100.0 3.2E-43 1.1E-47 373.3 18.6 344 67-417 178-581 (1108)
3 2xgj_A ATP-dependent RNA helic 100.0 1.5E-40 5E-45 350.1 37.2 347 67-419 80-434 (1010)
4 4a4z_A Antiviral helicase SKI2 100.0 5.6E-41 1.9E-45 353.3 33.7 371 43-419 9-427 (997)
5 2i4i_A ATP-dependent RNA helic 100.0 1.5E-41 5.1E-46 329.7 21.3 321 31-418 4-370 (417)
6 3eiq_A Eukaryotic initiation f 100.0 6.6E-41 2.3E-45 324.8 19.7 309 44-417 40-373 (414)
7 2j0s_A ATP-dependent RNA helic 100.0 7.4E-41 2.5E-45 324.1 19.7 311 43-417 36-369 (410)
8 3fht_A ATP-dependent RNA helic 100.0 6.8E-40 2.3E-44 317.4 22.2 313 42-417 23-365 (412)
9 3pey_A ATP-dependent RNA helic 100.0 5.7E-40 2E-44 316.0 21.0 312 43-417 4-342 (395)
10 3fmp_B ATP-dependent RNA helic 100.0 1.7E-40 5.7E-45 327.9 17.3 313 42-417 90-432 (479)
11 1xti_A Probable ATP-dependent 100.0 1.2E-39 4E-44 313.6 19.4 309 43-417 7-343 (391)
12 1s2m_A Putative ATP-dependent 100.0 1.8E-39 6E-44 313.4 19.8 308 44-418 21-352 (400)
13 1fuu_A Yeast initiation factor 100.0 4.8E-40 1.6E-44 316.6 14.5 311 43-417 20-352 (394)
14 1hv8_A Putative ATP-dependent 100.0 3.4E-39 1.2E-43 307.5 20.2 305 43-417 5-331 (367)
15 3i5x_A ATP-dependent RNA helic 100.0 6.5E-40 2.2E-44 330.2 12.3 321 42-417 69-435 (563)
16 3sqw_A ATP-dependent RNA helic 100.0 1.7E-39 5.8E-44 327.5 14.3 321 42-417 18-384 (579)
17 2va8_A SSO2462, SKI2-type heli 100.0 2.8E-38 9.6E-43 326.4 20.3 324 42-417 6-392 (715)
18 2p6r_A Afuhel308 helicase; pro 100.0 6.6E-39 2.3E-43 330.1 13.3 315 45-417 2-372 (702)
19 2zj8_A DNA helicase, putative 100.0 9.1E-39 3.1E-43 330.0 14.2 313 45-417 2-371 (720)
20 4f92_B U5 small nuclear ribonu 100.0 3.8E-38 1.3E-42 345.4 19.6 340 9-419 871-1241(1724)
21 3fho_A ATP-dependent RNA helic 100.0 1.1E-38 3.8E-43 316.1 11.4 291 50-402 124-429 (508)
22 4f92_B U5 small nuclear ribonu 100.0 7.8E-38 2.7E-42 342.9 18.4 290 74-419 80-406 (1724)
23 2z0m_A 337AA long hypothetical 100.0 5.2E-37 1.8E-41 289.0 19.9 284 61-417 7-309 (337)
24 3oiy_A Reverse gyrase helicase 100.0 1.2E-37 4.3E-42 301.7 15.8 274 71-417 19-347 (414)
25 2v1x_A ATP-dependent DNA helic 100.0 2.1E-37 7.2E-42 310.1 16.3 308 44-417 19-360 (591)
26 1oyw_A RECQ helicase, ATP-depe 100.0 4.6E-37 1.6E-41 304.6 15.1 297 50-417 7-329 (523)
27 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-34 6.4E-39 290.0 22.2 153 70-222 4-178 (556)
28 4ddu_A Reverse gyrase; topoiso 100.0 5E-35 1.7E-39 310.5 17.5 259 70-401 75-380 (1104)
29 3tbk_A RIG-I helicase domain; 100.0 5.6E-34 1.9E-38 286.4 21.7 153 71-223 2-177 (555)
30 2ykg_A Probable ATP-dependent 100.0 3.5E-33 1.2E-37 288.1 18.4 159 61-222 4-185 (696)
31 1wp9_A ATP-dependent RNA helic 100.0 1.7E-32 5.8E-37 270.8 22.5 340 72-417 8-462 (494)
32 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-32 4.2E-37 287.0 20.9 151 72-222 247-419 (797)
33 4gl2_A Interferon-induced heli 100.0 1.8E-33 6.2E-38 290.4 14.4 330 71-416 5-506 (699)
34 1wrb_A DJVLGB; RNA helicase, D 100.0 2.9E-32 1E-36 246.1 20.6 200 23-229 1-229 (253)
35 3iuy_A Probable ATP-dependent 100.0 4.3E-32 1.5E-36 241.1 17.9 179 41-225 16-213 (228)
36 3fe2_A Probable ATP-dependent 100.0 2E-32 6.9E-37 245.4 14.7 191 30-229 17-227 (242)
37 4a2w_A RIG-I, retinoic acid in 100.0 7.8E-32 2.7E-36 283.9 19.6 152 71-222 246-419 (936)
38 1gku_B Reverse gyrase, TOP-RG; 100.0 2.9E-33 9.8E-38 297.2 8.0 255 70-399 54-342 (1054)
39 3bor_A Human initiation factor 100.0 2.2E-31 7.4E-36 237.8 15.4 180 42-228 28-223 (237)
40 1vec_A ATP-dependent RNA helic 100.0 7.7E-31 2.6E-35 229.2 18.6 175 44-225 3-192 (206)
41 3fmo_B ATP-dependent RNA helic 100.0 7.9E-31 2.7E-35 241.8 18.5 193 31-230 78-288 (300)
42 2oxc_A Probable ATP-dependent 100.0 5.5E-31 1.9E-35 234.2 16.8 176 42-224 22-212 (230)
43 2eyq_A TRCF, transcription-rep 100.0 2.4E-31 8.2E-36 284.1 17.1 279 68-417 598-908 (1151)
44 1q0u_A Bstdead; DEAD protein, 100.0 4.2E-31 1.4E-35 233.1 15.1 176 43-225 3-196 (219)
45 2oca_A DAR protein, ATP-depend 100.0 1E-31 3.5E-36 267.2 12.3 305 71-417 111-441 (510)
46 2fwr_A DNA repair protein RAD2 100.0 1.9E-31 6.6E-36 262.6 13.8 315 68-418 88-438 (472)
47 2gxq_A Heat resistant RNA depe 100.0 1.2E-30 4E-35 228.2 15.9 180 45-231 2-197 (207)
48 3ly5_A ATP-dependent RNA helic 100.0 5.7E-31 1.9E-35 238.4 14.1 179 43-228 51-251 (262)
49 1gm5_A RECG; helicase, replica 100.0 3.8E-32 1.3E-36 277.8 6.5 279 69-417 364-683 (780)
50 1tf5_A Preprotein translocase 100.0 3.9E-31 1.4E-35 265.7 13.7 314 73-417 83-531 (844)
51 1qde_A EIF4A, translation init 100.0 3.1E-30 1.1E-34 228.5 17.6 179 43-228 13-205 (224)
52 2pl3_A Probable ATP-dependent 100.0 2.2E-30 7.5E-35 231.3 16.0 180 43-229 24-222 (236)
53 2whx_A Serine protease/ntpase/ 100.0 7.9E-32 2.7E-36 270.6 6.7 262 74-418 172-464 (618)
54 2xau_A PRE-mRNA-splicing facto 100.0 4.2E-31 1.5E-35 271.8 12.1 306 43-418 71-431 (773)
55 1t6n_A Probable ATP-dependent 100.0 7.4E-30 2.5E-34 225.4 17.4 179 43-228 13-209 (220)
56 3ber_A Probable ATP-dependent 100.0 6.4E-30 2.2E-34 229.7 16.5 180 43-229 42-237 (249)
57 2jlq_A Serine protease subunit 100.0 3E-31 1E-35 258.7 8.1 261 74-417 5-296 (451)
58 3dkp_A Probable ATP-dependent 100.0 1.1E-29 3.8E-34 228.1 16.4 187 31-225 14-225 (245)
59 2wv9_A Flavivirin protease NS2 100.0 3.4E-31 1.2E-35 267.7 6.4 276 61-418 201-519 (673)
60 3o8b_A HCV NS3 protease/helica 100.0 1.3E-30 4.4E-35 259.7 9.9 254 75-417 219-502 (666)
61 3h1t_A Type I site-specific re 100.0 2.9E-30 9.8E-35 261.0 12.6 318 72-418 177-543 (590)
62 2fsf_A Preprotein translocase 100.0 1E-29 3.4E-34 254.8 16.0 297 72-399 73-508 (853)
63 1nkt_A Preprotein translocase 100.0 1.7E-29 5.7E-34 253.5 14.7 312 71-399 109-527 (922)
64 2v6i_A RNA helicase; membrane, 100.0 1.6E-29 5.5E-34 244.9 12.5 250 87-417 1-276 (431)
65 1yks_A Genome polyprotein [con 100.0 1.9E-29 6.6E-34 244.8 8.8 250 85-417 5-284 (440)
66 2z83_A Helicase/nucleoside tri 100.0 2.3E-29 7.8E-34 245.8 6.9 256 82-418 15-299 (459)
67 3rc3_A ATP-dependent RNA helic 99.9 6.5E-27 2.2E-31 235.8 10.4 248 85-417 152-428 (677)
68 3dmq_A RNA polymerase-associat 99.9 2.5E-25 8.6E-30 234.8 14.5 342 71-417 151-599 (968)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1E-24 3.4E-29 228.7 18.4 308 73-418 271-692 (1038)
70 3b6e_A Interferon-induced heli 99.9 4E-24 1.4E-28 187.8 13.6 148 72-219 32-216 (216)
71 1rif_A DAR protein, DNA helica 99.9 2E-23 6.9E-28 191.1 13.3 147 72-225 112-267 (282)
72 3llm_A ATP-dependent RNA helic 99.9 1.3E-22 4.4E-27 180.5 16.2 154 74-232 62-229 (235)
73 1z63_A Helicase of the SNF2/RA 99.9 2.2E-23 7.6E-28 206.5 10.4 302 73-401 37-415 (500)
74 2fz4_A DNA repair protein RAD2 99.9 1E-21 3.5E-26 174.5 16.8 146 67-225 87-233 (237)
75 2ipc_A Preprotein translocase 99.9 3.8E-21 1.3E-25 192.7 16.6 120 71-192 77-215 (997)
76 3mwy_W Chromo domain-containin 99.8 2.1E-20 7.3E-25 194.3 15.2 319 72-401 235-646 (800)
77 3jux_A Protein translocase sub 99.8 6E-19 2E-23 173.9 21.9 99 313-417 458-573 (822)
78 1z3i_X Similar to RAD54-like; 99.8 1.1E-19 3.7E-24 184.5 16.9 322 73-401 55-490 (644)
79 2vl7_A XPD; helicase, unknown 99.8 1.5E-18 5.3E-23 172.5 15.3 118 72-192 6-188 (540)
80 1c4o_A DNA nucleotide excision 99.7 2.1E-17 7.2E-22 167.7 11.1 88 326-417 438-537 (664)
81 2d7d_A Uvrabc system protein B 99.6 1.6E-15 5.3E-20 153.9 14.7 88 326-417 444-543 (661)
82 3crv_A XPD/RAD3 related DNA he 99.6 2.3E-15 7.9E-20 150.1 10.1 119 72-193 2-187 (551)
83 2hjv_A ATP-dependent RNA helic 99.2 4.2E-12 1.4E-16 105.7 2.7 102 312-417 20-128 (163)
84 1t5i_A C_terminal domain of A 99.2 5E-12 1.7E-16 106.1 2.6 102 312-417 16-124 (172)
85 3eaq_A Heat resistant RNA depe 99.1 7.3E-12 2.5E-16 108.9 1.1 104 311-418 15-125 (212)
86 2yjt_D ATP-dependent RNA helic 98.7 7.8E-12 2.7E-16 104.8 0.0 100 313-416 16-122 (170)
87 1w36_D RECD, exodeoxyribonucle 99.1 2.7E-10 9.1E-15 114.5 10.4 139 75-219 151-298 (608)
88 2rb4_A ATP-dependent RNA helic 99.1 1.6E-11 5.3E-16 103.5 0.9 100 314-417 21-133 (175)
89 1fuk_A Eukaryotic initiation f 99.1 2.3E-11 7.7E-16 101.4 1.7 84 314-401 17-101 (165)
90 2jgn_A DBX, DDX3, ATP-dependen 99.1 3.1E-11 1.1E-15 102.5 2.5 102 312-417 30-139 (185)
91 2p6n_A ATP-dependent RNA helic 99.1 4.1E-11 1.4E-15 102.2 2.6 101 312-417 40-147 (191)
92 3i32_A Heat resistant RNA depe 99.0 3.3E-11 1.1E-15 110.0 0.6 103 311-417 12-121 (300)
93 4a15_A XPD helicase, ATP-depen 98.8 4.6E-09 1.6E-13 105.6 8.4 69 72-140 2-75 (620)
94 3e1s_A Exodeoxyribonuclease V, 98.7 5.3E-08 1.8E-12 96.9 12.4 123 71-217 187-313 (574)
95 3upu_A ATP-dependent DNA helic 98.6 2.3E-07 7.8E-12 90.2 12.5 120 74-217 26-162 (459)
96 4b3f_X DNA-binding protein smu 98.6 6.9E-08 2.4E-12 98.0 7.8 69 73-141 189-258 (646)
97 2gk6_A Regulator of nonsense t 98.6 5.1E-07 1.7E-11 91.1 13.1 68 73-140 180-248 (624)
98 2xzl_A ATP-dependent helicase 98.5 6.7E-07 2.3E-11 92.3 12.5 68 73-140 360-428 (802)
99 2wjy_A Regulator of nonsense t 98.5 1.1E-06 3.8E-11 90.5 13.3 68 73-140 356-424 (800)
100 1z5z_A Helicase of the SNF2/RA 98.1 5.3E-07 1.8E-11 81.0 0.0 86 312-401 95-186 (271)
101 2o0j_A Terminase, DNA packagin 98.0 9.4E-05 3.2E-09 69.3 14.5 115 70-193 160-287 (385)
102 3cpe_A Terminase, DNA packagin 97.9 0.00034 1.1E-08 70.0 16.6 142 69-222 159-315 (592)
103 3vkw_A Replicase large subunit 97.8 0.00012 4.1E-09 69.4 10.8 106 89-217 162-267 (446)
104 3ec2_A DNA replication protein 97.8 0.00012 4E-09 61.2 9.7 119 75-223 16-146 (180)
105 3lfu_A DNA helicase II; SF1 he 97.5 0.00025 8.6E-09 71.9 9.8 66 74-141 10-79 (647)
106 3te6_A Regulatory protein SIR3 97.5 0.0011 3.6E-08 60.5 12.3 123 87-224 44-177 (318)
107 2kjq_A DNAA-related protein; s 97.5 0.00014 4.8E-09 58.7 5.7 36 87-122 35-70 (149)
108 2orw_A Thymidine kinase; TMTK, 97.4 0.00046 1.6E-08 57.8 8.3 40 87-126 2-41 (184)
109 1xx6_A Thymidine kinase; NESG, 97.4 0.00058 2E-08 57.5 8.8 40 87-126 7-46 (191)
110 2b8t_A Thymidine kinase; deoxy 97.4 0.0011 3.8E-08 57.1 10.4 93 86-192 10-102 (223)
111 1l8q_A Chromosomal replication 97.3 0.002 6.7E-08 59.2 11.4 76 88-193 37-112 (324)
112 2v1u_A Cell division control p 97.2 0.00094 3.2E-08 62.8 8.4 26 87-112 43-68 (387)
113 2p65_A Hypothetical protein PF 97.1 0.0021 7.1E-08 53.4 9.0 25 88-112 43-67 (187)
114 1uaa_A REP helicase, protein ( 97.1 0.0014 4.8E-08 66.7 9.3 84 73-168 2-89 (673)
115 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0017 5.7E-08 66.7 9.1 82 74-168 12-97 (724)
116 3n70_A Transport activator; si 97.0 0.00063 2.2E-08 54.5 4.6 22 86-107 22-43 (145)
117 2w58_A DNAI, primosome compone 97.0 0.0047 1.6E-07 52.3 10.4 35 89-123 55-89 (202)
118 3bos_A Putative DNA replicatio 97.0 0.0013 4.5E-08 57.2 6.9 37 87-123 51-87 (242)
119 3co5_A Putative two-component 96.9 0.0043 1.5E-07 49.4 9.0 22 83-104 22-43 (143)
120 2z4s_A Chromosomal replication 96.9 0.0044 1.5E-07 59.5 10.6 101 88-217 130-234 (440)
121 2chg_A Replication factor C sm 96.9 0.0077 2.6E-07 51.3 11.3 39 178-217 101-139 (226)
122 1jbk_A CLPB protein; beta barr 96.9 0.026 8.8E-07 46.7 13.9 24 88-111 43-66 (195)
123 2j9r_A Thymidine kinase; TK1, 96.9 0.0038 1.3E-07 53.1 8.5 41 87-127 27-67 (214)
124 1a5t_A Delta prime, HOLB; zinc 96.8 0.0055 1.9E-07 56.5 10.2 39 75-113 4-49 (334)
125 1w4r_A Thymidine kinase; type 96.8 0.0015 5E-08 54.7 5.6 40 86-125 18-57 (195)
126 2zpa_A Uncharacterized protein 96.8 0.0046 1.6E-07 61.7 10.1 114 74-223 176-291 (671)
127 2qby_B CDC6 homolog 3, cell di 96.8 0.0018 6E-08 61.0 6.9 25 88-112 45-69 (384)
128 1d2n_A N-ethylmaleimide-sensit 96.8 0.0093 3.2E-07 53.1 11.3 21 89-109 65-85 (272)
129 1fnn_A CDC6P, cell division co 96.8 0.0029 9.8E-08 59.5 7.9 34 90-123 46-80 (389)
130 3kl4_A SRP54, signal recogniti 96.7 0.01 3.5E-07 56.4 11.3 131 89-231 98-235 (433)
131 4a15_A XPD helicase, ATP-depen 96.7 0.00081 2.8E-08 67.5 3.3 78 315-400 437-516 (620)
132 2orv_A Thymidine kinase; TP4A 96.7 0.0052 1.8E-07 52.8 7.8 41 87-127 18-58 (234)
133 3h4m_A Proteasome-activating n 96.6 0.0092 3.1E-07 53.5 9.8 23 86-108 49-71 (285)
134 2qgz_A Helicase loader, putati 96.6 0.0055 1.9E-07 55.8 8.3 36 88-123 152-188 (308)
135 3u4q_A ATP-dependent helicase/ 96.6 0.0031 1E-07 68.6 7.6 66 73-140 10-81 (1232)
136 2qby_A CDC6 homolog 1, cell di 96.6 0.0046 1.6E-07 57.9 8.1 36 88-123 45-83 (386)
137 3syl_A Protein CBBX; photosynt 96.5 0.007 2.4E-07 55.0 8.5 25 88-112 67-91 (309)
138 1sxj_E Activator 1 40 kDa subu 96.5 0.0099 3.4E-07 55.1 9.4 44 177-221 132-175 (354)
139 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0044 1.5E-07 52.6 6.0 42 86-127 26-67 (219)
140 3u61_B DNA polymerase accessor 96.4 0.006 2E-07 55.9 7.2 40 178-217 104-143 (324)
141 2bjv_A PSP operon transcriptio 96.4 0.01 3.5E-07 52.6 8.2 23 86-108 27-49 (265)
142 1iqp_A RFCS; clamp loader, ext 96.3 0.022 7.5E-07 51.9 10.7 39 178-217 109-147 (327)
143 4b4t_J 26S protease regulatory 96.3 0.043 1.5E-06 51.4 12.5 60 40-109 141-203 (405)
144 2dr3_A UPF0273 protein PH0284; 96.3 0.027 9.1E-07 49.0 10.4 53 86-139 21-73 (247)
145 1njg_A DNA polymerase III subu 96.2 0.063 2.2E-06 46.1 12.7 23 90-112 47-69 (250)
146 2gno_A DNA polymerase III, gam 96.0 0.026 8.8E-07 51.2 9.2 20 89-108 19-38 (305)
147 3uk6_A RUVB-like 2; hexameric 96.0 0.083 2.8E-06 49.0 13.0 33 88-120 70-102 (368)
148 3pvs_A Replication-associated 96.0 0.01 3.6E-07 56.9 6.7 20 89-108 51-70 (447)
149 1sxj_C Activator 1 40 kDa subu 96.0 0.032 1.1E-06 51.4 9.7 39 178-217 109-147 (340)
150 3dm5_A SRP54, signal recogniti 96.0 0.033 1.1E-06 53.0 9.8 131 89-231 101-236 (443)
151 1sxj_A Activator 1 95 kDa subu 95.9 0.037 1.3E-06 54.2 10.5 33 89-124 78-110 (516)
152 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.073 2.5E-06 48.6 11.4 20 88-107 45-64 (322)
153 1ojl_A Transcriptional regulat 95.8 0.011 3.8E-07 53.6 5.7 23 86-108 23-45 (304)
154 3eie_A Vacuolar protein sortin 95.8 0.025 8.6E-07 51.7 8.1 21 88-108 51-71 (322)
155 3pfi_A Holliday junction ATP-d 95.8 0.048 1.6E-06 50.1 10.1 20 89-108 56-75 (338)
156 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.044 1.5E-06 47.1 9.1 51 87-138 22-72 (235)
157 1sxj_D Activator 1 41 kDa subu 95.7 0.041 1.4E-06 50.8 9.4 39 178-217 132-170 (353)
158 4b4t_L 26S protease subunit RP 95.6 0.076 2.6E-06 50.4 10.8 23 87-109 214-236 (437)
159 2cvh_A DNA repair and recombin 95.6 0.014 4.7E-07 49.9 5.2 35 87-124 19-53 (220)
160 3hu3_A Transitional endoplasmi 95.6 0.023 7.9E-07 55.1 7.2 22 87-108 237-258 (489)
161 2qp9_X Vacuolar protein sortin 95.5 0.05 1.7E-06 50.5 9.3 25 88-112 84-108 (355)
162 3vfd_A Spastin; ATPase, microt 95.5 0.078 2.7E-06 49.8 10.7 21 88-108 148-168 (389)
163 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.13 4.6E-06 45.0 11.7 22 87-108 38-59 (262)
164 1w5s_A Origin recognition comp 95.5 0.043 1.5E-06 51.8 8.7 24 88-111 50-75 (412)
165 1nlf_A Regulatory protein REPA 95.4 0.046 1.6E-06 48.7 8.3 53 86-139 28-90 (279)
166 1hqc_A RUVB; extended AAA-ATPa 95.4 0.048 1.6E-06 49.7 8.5 21 88-108 38-58 (324)
167 3bh0_A DNAB-like replicative h 95.3 0.11 3.7E-06 47.3 10.7 54 85-139 65-118 (315)
168 2q6t_A DNAB replication FORK h 95.3 0.049 1.7E-06 52.3 8.7 106 86-193 198-324 (444)
169 4a1f_A DNAB helicase, replicat 95.3 0.018 6E-07 52.9 5.2 52 86-138 44-95 (338)
170 4b4t_H 26S protease regulatory 95.2 0.15 5.2E-06 48.5 11.4 23 87-109 242-264 (467)
171 3d8b_A Fidgetin-like protein 1 95.2 0.098 3.3E-06 48.5 9.9 21 88-108 117-137 (357)
172 4b4t_K 26S protease regulatory 95.2 0.13 4.3E-06 48.8 10.7 23 87-109 205-227 (428)
173 1sxj_B Activator 1 37 kDa subu 95.1 0.065 2.2E-06 48.6 8.6 38 179-217 107-144 (323)
174 1g5t_A COB(I)alamin adenosyltr 95.1 0.13 4.5E-06 42.9 9.6 40 87-126 27-66 (196)
175 2i3b_A HCR-ntpase, human cance 95.1 0.035 1.2E-06 46.4 6.1 43 177-222 103-147 (189)
176 3m6a_A ATP-dependent protease 95.0 0.039 1.4E-06 54.3 7.0 22 87-108 107-128 (543)
177 1jr3_A DNA polymerase III subu 95.0 0.08 2.7E-06 49.2 8.8 23 90-112 40-62 (373)
178 2r6a_A DNAB helicase, replicat 94.9 0.062 2.1E-06 51.7 8.1 50 86-136 201-251 (454)
179 3bgw_A DNAB-like replicative h 94.9 0.078 2.7E-06 50.7 8.7 131 86-218 195-358 (444)
180 2z43_A DNA repair and recombin 94.8 0.024 8.1E-07 51.9 4.6 53 87-139 106-165 (324)
181 2zan_A Vacuolar protein sortin 94.8 0.084 2.9E-06 50.6 8.6 20 88-107 167-186 (444)
182 3t15_A Ribulose bisphosphate c 94.7 0.081 2.8E-06 47.6 7.9 24 89-112 37-60 (293)
183 3cf0_A Transitional endoplasmi 94.4 0.077 2.6E-06 47.9 7.0 23 86-108 47-69 (301)
184 3cmu_A Protein RECA, recombina 94.4 0.038 1.3E-06 61.9 5.6 95 82-192 1415-1518(2050)
185 1xp8_A RECA protein, recombina 94.4 0.19 6.5E-06 46.6 9.6 90 87-192 73-165 (366)
186 2chq_A Replication factor C sm 94.3 0.088 3E-06 47.6 7.2 22 90-111 40-61 (319)
187 2fna_A Conserved hypothetical 94.0 1.8 6.3E-05 39.3 15.7 33 75-108 18-50 (357)
188 4b4t_I 26S protease regulatory 93.9 0.68 2.3E-05 43.6 12.3 22 88-109 216-237 (437)
189 1q57_A DNA primase/helicase; d 93.8 0.13 4.6E-06 50.1 7.7 52 86-138 240-292 (503)
190 3cf2_A TER ATPase, transitiona 93.7 0.24 8.1E-06 50.8 9.6 18 88-105 238-255 (806)
191 1p9r_A General secretion pathw 93.2 0.13 4.4E-06 48.7 6.4 48 75-122 152-201 (418)
192 3pxi_A Negative regulator of g 93.1 0.29 9.9E-06 50.3 9.3 23 90-112 523-545 (758)
193 2l8b_A Protein TRAI, DNA helic 93.1 0.19 6.3E-06 41.2 6.2 120 74-219 35-158 (189)
194 1e9r_A Conjugal transfer prote 93.0 0.097 3.3E-06 50.0 5.3 44 87-130 52-95 (437)
195 4a4z_A Antiviral helicase SKI2 92.8 0.011 3.9E-07 62.5 -1.8 57 357-417 405-476 (997)
196 2ce7_A Cell division protein F 92.6 0.82 2.8E-05 43.9 11.0 21 88-108 49-69 (476)
197 2qen_A Walker-type ATPase; unk 92.5 0.47 1.6E-05 43.3 9.0 31 75-105 17-48 (350)
198 1pzn_A RAD51, DNA repair and r 92.4 0.14 4.9E-06 47.2 5.3 38 87-124 130-173 (349)
199 3crv_A XPD/RAD3 related DNA he 92.2 0.028 9.5E-07 55.6 0.3 74 315-398 382-457 (551)
200 1r6b_X CLPA protein; AAA+, N-t 92.2 0.45 1.5E-05 48.9 9.3 24 87-110 206-229 (758)
201 1qvr_A CLPB protein; coiled co 92.0 0.26 8.8E-06 51.5 7.3 25 88-112 191-215 (854)
202 2oap_1 GSPE-2, type II secreti 92.0 0.2 6.8E-06 48.8 6.0 48 75-123 246-294 (511)
203 2vhj_A Ntpase P4, P4; non- hyd 91.9 0.21 7.3E-06 45.2 5.6 23 87-109 122-144 (331)
204 2eyu_A Twitching motility prot 91.9 0.12 4.3E-06 45.5 4.1 38 85-122 22-60 (261)
205 4ag6_A VIRB4 ATPase, type IV s 91.6 0.16 5.6E-06 47.6 4.8 42 87-128 34-75 (392)
206 2px0_A Flagellar biosynthesis 91.4 0.2 6.9E-06 45.0 4.9 123 87-229 104-232 (296)
207 2zts_A Putative uncharacterize 91.1 0.15 5E-06 44.3 3.7 54 87-141 29-83 (251)
208 2gza_A Type IV secretion syste 91.0 0.16 5.6E-06 47.0 4.1 38 85-123 172-209 (361)
209 2xgj_A ATP-dependent RNA helic 90.9 0.022 7.4E-07 60.4 -2.3 57 357-417 412-483 (1010)
210 1ypw_A Transitional endoplasmi 90.8 1.2 4E-05 46.1 10.6 20 87-106 237-256 (806)
211 3cmw_A Protein RECA, recombina 90.7 0.21 7.2E-06 55.3 5.1 91 87-193 1430-1523(1706)
212 2ewv_A Twitching motility prot 90.7 0.18 6.2E-06 47.0 4.0 39 85-123 133-172 (372)
213 1xjc_A MOBB protein homolog; s 90.5 0.29 9.9E-06 39.8 4.6 35 89-123 5-39 (169)
214 3b85_A Phosphate starvation-in 90.5 0.28 9.5E-06 41.5 4.7 32 75-106 9-40 (208)
215 3cmw_A Protein RECA, recombina 90.3 0.34 1.2E-05 53.7 6.3 91 87-193 33-126 (1706)
216 3hr8_A Protein RECA; alpha and 90.3 0.23 7.8E-06 45.8 4.2 42 87-128 60-101 (356)
217 2zr9_A Protein RECA, recombina 90.2 0.29 9.9E-06 45.1 4.9 39 87-125 60-98 (349)
218 3jvv_A Twitching mobility prot 90.2 0.22 7.4E-06 46.1 4.1 38 86-123 121-159 (356)
219 1vma_A Cell division protein F 90.1 0.26 9.1E-06 44.4 4.5 36 88-123 104-139 (306)
220 1kgd_A CASK, peripheral plasma 90.0 0.19 6.5E-06 41.3 3.2 21 87-107 4-24 (180)
221 1rj9_A FTSY, signal recognitio 90.0 0.35 1.2E-05 43.6 5.2 37 87-123 101-137 (304)
222 2yvu_A Probable adenylyl-sulfa 89.9 0.31 1.1E-05 40.2 4.5 36 87-122 12-47 (186)
223 2r8r_A Sensor protein; KDPD, P 89.9 0.33 1.1E-05 41.5 4.6 34 90-123 8-41 (228)
224 1u94_A RECA protein, recombina 89.8 0.33 1.1E-05 44.8 4.9 40 87-126 62-101 (356)
225 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.19 6.6E-06 45.9 3.2 39 85-124 168-206 (330)
226 1zu4_A FTSY; GTPase, signal re 89.3 0.34 1.1E-05 44.1 4.5 36 88-123 105-140 (320)
227 3a8t_A Adenylate isopentenyltr 89.3 0.2 6.7E-06 45.7 2.9 21 87-107 39-59 (339)
228 4b4t_M 26S protease regulatory 89.2 0.3 1E-05 46.2 4.3 22 87-108 214-235 (434)
229 3vaa_A Shikimate kinase, SK; s 89.1 0.3 1E-05 40.8 3.9 26 86-111 23-48 (199)
230 3b9q_A Chloroplast SRP recepto 88.9 0.37 1.3E-05 43.4 4.5 37 87-123 99-135 (302)
231 3tau_A Guanylate kinase, GMP k 88.8 0.27 9.4E-06 41.5 3.4 20 87-106 7-26 (208)
232 2qmh_A HPR kinase/phosphorylas 88.8 0.24 8E-06 41.5 2.8 19 87-105 33-51 (205)
233 3hjh_A Transcription-repair-co 88.7 0.72 2.5E-05 44.4 6.6 53 87-142 13-65 (483)
234 1nks_A Adenylate kinase; therm 88.7 0.7 2.4E-05 38.0 5.8 38 90-128 3-40 (194)
235 1lvg_A Guanylate kinase, GMP k 88.5 0.27 9.4E-06 41.1 3.2 22 87-108 3-24 (198)
236 3uie_A Adenylyl-sulfate kinase 88.5 0.45 1.5E-05 39.8 4.5 32 86-117 23-54 (200)
237 2ehv_A Hypothetical protein PH 88.5 0.39 1.3E-05 41.5 4.3 38 86-123 28-66 (251)
238 1cr0_A DNA primase/helicase; R 88.1 0.53 1.8E-05 42.1 5.0 38 86-123 33-71 (296)
239 3exa_A TRNA delta(2)-isopenten 88.1 0.26 9E-06 44.4 2.9 21 88-108 3-23 (322)
240 3trf_A Shikimate kinase, SK; a 88.0 0.39 1.3E-05 39.4 3.8 23 88-110 5-27 (185)
241 4fcw_A Chaperone protein CLPB; 87.9 0.54 1.8E-05 42.2 5.0 33 89-121 48-80 (311)
242 3ney_A 55 kDa erythrocyte memb 87.9 0.33 1.1E-05 40.6 3.2 20 86-105 17-36 (197)
243 2p6n_A ATP-dependent RNA helic 87.8 2.1 7.1E-05 35.4 8.2 81 98-187 39-130 (191)
244 3tr0_A Guanylate kinase, GMP k 87.8 0.33 1.1E-05 40.6 3.2 22 86-107 5-26 (205)
245 3e70_C DPA, signal recognition 87.6 0.49 1.7E-05 43.2 4.4 125 87-223 128-256 (328)
246 1n0w_A DNA repair protein RAD5 87.3 0.69 2.4E-05 39.7 5.2 38 87-124 23-66 (243)
247 2og2_A Putative signal recogni 87.3 0.52 1.8E-05 43.5 4.4 36 88-123 157-192 (359)
248 2j41_A Guanylate kinase; GMP, 87.0 0.38 1.3E-05 40.2 3.2 22 86-107 4-25 (207)
249 2v9p_A Replication protein E1; 86.7 0.53 1.8E-05 42.4 4.1 36 86-124 124-159 (305)
250 3io5_A Recombination and repai 86.7 0.43 1.5E-05 43.1 3.4 88 90-192 30-124 (333)
251 3foz_A TRNA delta(2)-isopenten 86.6 0.38 1.3E-05 43.3 3.0 20 89-108 11-30 (316)
252 1rz3_A Hypothetical protein rb 86.6 0.66 2.3E-05 38.8 4.4 36 87-122 21-56 (201)
253 1fuk_A Eukaryotic initiation f 86.5 2.4 8.3E-05 33.9 7.7 68 115-188 29-107 (165)
254 2ze6_A Isopentenyl transferase 86.4 0.47 1.6E-05 41.5 3.5 20 90-109 3-22 (253)
255 1kag_A SKI, shikimate kinase I 86.3 0.48 1.7E-05 38.3 3.4 22 87-108 3-24 (173)
256 1zp6_A Hypothetical protein AT 86.3 0.39 1.3E-05 39.6 2.8 20 86-105 7-26 (191)
257 3hws_A ATP-dependent CLP prote 86.2 0.81 2.8E-05 42.3 5.3 23 87-109 50-72 (363)
258 2qor_A Guanylate kinase; phosp 86.2 0.48 1.7E-05 39.7 3.4 25 85-109 9-33 (204)
259 1z6g_A Guanylate kinase; struc 86.2 0.49 1.7E-05 40.3 3.4 22 85-106 20-41 (218)
260 1qhx_A CPT, protein (chloramph 86.1 0.49 1.7E-05 38.5 3.3 22 88-109 3-24 (178)
261 2pez_A Bifunctional 3'-phospho 86.0 0.78 2.7E-05 37.4 4.5 34 87-120 4-37 (179)
262 3nbx_X ATPase RAVA; AAA+ ATPas 85.8 0.49 1.7E-05 45.8 3.6 27 79-105 32-58 (500)
263 1j8m_F SRP54, signal recogniti 85.8 0.65 2.2E-05 41.6 4.2 121 88-220 98-224 (297)
264 3c8u_A Fructokinase; YP_612366 85.7 0.78 2.7E-05 38.5 4.5 22 87-108 21-42 (208)
265 1ls1_A Signal recognition part 85.7 0.71 2.4E-05 41.4 4.4 37 87-123 97-133 (295)
266 2xxa_A Signal recognition part 85.6 0.69 2.4E-05 43.9 4.5 121 89-221 101-226 (433)
267 3a00_A Guanylate kinase, GMP k 85.6 0.53 1.8E-05 38.8 3.3 20 88-107 1-20 (186)
268 1np6_A Molybdopterin-guanine d 85.6 0.89 3E-05 37.1 4.6 30 89-118 7-36 (174)
269 1y63_A LMAJ004144AAA protein; 85.6 0.55 1.9E-05 38.6 3.4 22 87-108 9-30 (184)
270 2yhs_A FTSY, cell division pro 85.6 0.7 2.4E-05 44.4 4.5 35 88-122 293-327 (503)
271 3iij_A Coilin-interacting nucl 85.5 0.68 2.3E-05 37.8 3.9 24 86-109 9-32 (180)
272 2v3c_C SRP54, signal recogniti 85.5 0.49 1.7E-05 44.9 3.4 35 89-123 100-134 (432)
273 2jgn_A DBX, DDX3, ATP-dependen 85.4 3.2 0.00011 34.1 8.0 81 98-185 29-120 (185)
274 1m7g_A Adenylylsulfate kinase; 85.4 0.8 2.7E-05 38.6 4.4 47 75-122 13-60 (211)
275 1v5w_A DMC1, meiotic recombina 85.4 0.79 2.7E-05 42.0 4.7 53 87-139 121-180 (343)
276 1kht_A Adenylate kinase; phosp 85.4 0.86 3E-05 37.4 4.5 27 87-113 2-28 (192)
277 3cf2_A TER ATPase, transitiona 85.3 3.1 0.00011 42.7 9.3 18 88-105 511-528 (806)
278 1znw_A Guanylate kinase, GMP k 85.3 0.57 2E-05 39.4 3.4 22 84-105 16-37 (207)
279 1s96_A Guanylate kinase, GMP k 85.2 0.57 1.9E-05 39.9 3.4 23 84-106 12-34 (219)
280 4gp7_A Metallophosphoesterase; 85.2 0.37 1.3E-05 39.2 2.1 19 87-105 8-26 (171)
281 2ffh_A Protein (FFH); SRP54, s 85.2 0.81 2.8E-05 43.3 4.7 122 88-221 98-223 (425)
282 3lw7_A Adenylate kinase relate 85.1 0.48 1.6E-05 38.2 2.8 20 89-108 2-21 (179)
283 2hjv_A ATP-dependent RNA helic 85.0 3.6 0.00012 32.8 8.0 69 114-188 33-112 (163)
284 2r44_A Uncharacterized protein 85.0 0.56 1.9E-05 42.7 3.5 26 82-107 40-65 (331)
285 4a74_A DNA repair and recombin 84.9 0.93 3.2E-05 38.5 4.7 40 86-125 23-68 (231)
286 3eaq_A Heat resistant RNA depe 84.7 3.9 0.00013 34.3 8.5 80 98-185 15-105 (212)
287 4eun_A Thermoresistant glucoki 84.7 0.75 2.6E-05 38.4 3.9 23 87-109 28-50 (200)
288 2i1q_A DNA repair and recombin 84.7 0.9 3.1E-05 41.2 4.7 53 87-139 97-166 (322)
289 3crm_A TRNA delta(2)-isopenten 84.5 0.53 1.8E-05 42.6 3.0 21 89-109 6-26 (323)
290 3a4m_A L-seryl-tRNA(SEC) kinas 84.4 0.93 3.2E-05 39.7 4.5 35 88-122 4-38 (260)
291 3b9p_A CG5977-PA, isoform A; A 84.4 0.59 2E-05 41.7 3.3 21 87-107 53-73 (297)
292 1nij_A Hypothetical protein YJ 84.3 0.91 3.1E-05 41.1 4.5 15 90-104 6-20 (318)
293 1ex7_A Guanylate kinase; subst 84.2 0.69 2.4E-05 38.3 3.3 16 89-104 2-17 (186)
294 1ofh_A ATP-dependent HSL prote 84.2 0.75 2.6E-05 41.1 3.9 25 87-111 49-73 (310)
295 3d3q_A TRNA delta(2)-isopenten 84.2 0.61 2.1E-05 42.6 3.2 22 89-110 8-29 (340)
296 1nn5_A Similar to deoxythymidy 84.1 1.2 4.2E-05 37.3 5.0 35 86-120 7-41 (215)
297 2z0h_A DTMP kinase, thymidylat 83.9 1.2 4E-05 36.8 4.8 31 90-120 2-32 (197)
298 3kb2_A SPBC2 prophage-derived 83.9 0.81 2.8E-05 36.8 3.6 20 90-109 3-22 (173)
299 2rb4_A ATP-dependent RNA helic 83.8 1.7 6E-05 35.2 5.7 67 115-187 33-110 (175)
300 1c9k_A COBU, adenosylcobinamid 83.8 0.56 1.9E-05 38.5 2.6 43 91-137 2-44 (180)
301 3cm0_A Adenylate kinase; ATP-b 83.8 0.5 1.7E-05 38.8 2.3 23 87-109 3-25 (186)
302 2plr_A DTMP kinase, probable t 83.8 1.8 6.1E-05 36.1 5.9 30 87-116 3-32 (213)
303 2r2a_A Uncharacterized protein 83.3 0.63 2.2E-05 39.0 2.8 20 90-109 7-26 (199)
304 1knq_A Gluconate kinase; ALFA/ 83.3 0.65 2.2E-05 37.7 2.8 22 87-108 7-28 (175)
305 1lv7_A FTSH; alpha/beta domain 83.2 0.73 2.5E-05 40.1 3.3 21 88-108 45-65 (257)
306 2wwf_A Thymidilate kinase, put 83.0 1.4 4.9E-05 36.8 5.0 33 87-119 9-41 (212)
307 2c95_A Adenylate kinase 1; tra 83.0 1 3.5E-05 37.1 4.0 27 85-111 6-32 (196)
308 3eph_A TRNA isopentenyltransfe 82.8 0.79 2.7E-05 42.8 3.4 20 90-109 4-23 (409)
309 4edh_A DTMP kinase, thymidylat 82.6 1.4 4.9E-05 37.2 4.7 37 86-122 4-40 (213)
310 3fkq_A NTRC-like two-domain pr 82.4 2 7E-05 39.7 6.2 30 94-123 150-179 (373)
311 1ly1_A Polynucleotide kinase; 82.3 0.79 2.7E-05 37.2 3.0 19 90-108 4-22 (181)
312 1tue_A Replication protein E1; 82.2 0.85 2.9E-05 38.3 3.0 30 79-108 45-78 (212)
313 3lnc_A Guanylate kinase, GMP k 82.1 0.6 2.1E-05 40.0 2.3 21 86-106 25-45 (231)
314 2bwj_A Adenylate kinase 5; pho 82.0 1.1 3.8E-05 37.0 3.9 27 85-111 9-35 (199)
315 3u4q_B ATP-dependent helicase/ 82.0 2.5 8.7E-05 45.6 7.5 70 91-171 4-76 (1166)
316 3nwj_A ATSK2; P loop, shikimat 81.6 1.3 4.4E-05 38.6 4.2 24 87-110 47-70 (250)
317 1um8_A ATP-dependent CLP prote 81.6 0.9 3.1E-05 42.2 3.4 23 87-109 71-93 (376)
318 2rhm_A Putative kinase; P-loop 81.4 1 3.5E-05 37.0 3.4 26 87-112 4-29 (193)
319 1gtv_A TMK, thymidylate kinase 81.3 0.55 1.9E-05 39.5 1.7 31 90-120 2-32 (214)
320 1zuh_A Shikimate kinase; alpha 81.3 1.2 4E-05 35.8 3.6 24 89-112 8-31 (168)
321 1u0j_A DNA replication protein 81.1 1.7 5.7E-05 38.1 4.7 32 75-106 85-122 (267)
322 1tf7_A KAIC; homohexamer, hexa 81.0 1.7 5.7E-05 42.4 5.3 52 86-138 279-330 (525)
323 2pbr_A DTMP kinase, thymidylat 81.0 1.7 5.7E-05 35.6 4.6 31 90-120 2-32 (195)
324 1via_A Shikimate kinase; struc 80.9 1.2 4.2E-05 36.0 3.7 23 89-111 5-27 (175)
325 2j37_W Signal recognition part 80.8 1.3 4.3E-05 42.9 4.2 35 90-124 103-137 (504)
326 2woo_A ATPase GET3; tail-ancho 80.8 1.6 5.5E-05 39.7 4.8 36 88-123 19-54 (329)
327 3zq6_A Putative arsenical pump 80.8 1.5 5.3E-05 39.7 4.6 35 89-123 15-49 (324)
328 3tqc_A Pantothenate kinase; bi 80.7 3.2 0.00011 37.6 6.6 19 90-108 94-112 (321)
329 2bdt_A BH3686; alpha-beta prot 80.6 0.76 2.6E-05 37.8 2.3 20 89-108 3-22 (189)
330 1byi_A Dethiobiotin synthase; 80.6 1.8 6.1E-05 36.6 4.7 33 92-124 6-38 (224)
331 2c9o_A RUVB-like 1; hexameric 80.4 2 6.9E-05 41.0 5.5 24 88-111 63-86 (456)
332 3asz_A Uridine kinase; cytidin 80.4 0.95 3.3E-05 37.9 2.9 22 87-108 5-26 (211)
333 3tif_A Uncharacterized ABC tra 80.3 0.72 2.5E-05 39.7 2.1 19 86-104 29-47 (235)
334 1sq5_A Pantothenate kinase; P- 80.2 1.7 6E-05 39.0 4.7 23 87-109 79-101 (308)
335 1aky_A Adenylate kinase; ATP:A 80.2 1.4 4.8E-05 37.3 3.9 26 87-112 3-28 (220)
336 1tev_A UMP-CMP kinase; ploop, 80.1 1.2 4E-05 36.7 3.3 22 88-109 3-24 (196)
337 3t61_A Gluconokinase; PSI-biol 80.0 1.2 4.3E-05 37.0 3.5 22 88-109 18-39 (202)
338 3lda_A DNA repair protein RAD5 79.9 2 6.9E-05 40.2 5.2 39 87-125 177-221 (400)
339 1gvn_B Zeta; postsegregational 79.7 0.99 3.4E-05 40.2 2.9 22 88-109 33-54 (287)
340 2v54_A DTMP kinase, thymidylat 79.7 1.3 4.3E-05 36.9 3.4 23 87-109 3-25 (204)
341 1odf_A YGR205W, hypothetical 3 79.6 0.82 2.8E-05 40.8 2.3 21 89-109 32-52 (290)
342 2iyv_A Shikimate kinase, SK; t 79.6 1.5 5.2E-05 35.7 3.8 22 89-110 3-24 (184)
343 2d7d_A Uvrabc system protein B 79.6 6.8 0.00023 39.3 9.3 77 109-191 438-525 (661)
344 3tlx_A Adenylate kinase 2; str 79.6 1.3 4.6E-05 38.2 3.6 24 87-110 28-51 (243)
345 1zak_A Adenylate kinase; ATP:A 79.5 1.5 5.1E-05 37.1 3.9 25 88-112 5-29 (222)
346 1zd8_A GTP:AMP phosphotransfer 79.5 1.2 4.2E-05 37.9 3.3 23 87-109 6-28 (227)
347 1ye8_A Protein THEP1, hypothet 79.4 1.5 5.1E-05 35.9 3.7 18 90-107 2-19 (178)
348 2qt1_A Nicotinamide riboside k 79.4 1.1 3.7E-05 37.5 2.9 22 86-107 19-40 (207)
349 1ixz_A ATP-dependent metallopr 79.4 1.2 4E-05 38.7 3.3 18 89-106 50-67 (254)
350 1cke_A CK, MSSA, protein (cyti 79.4 1.2 4.1E-05 37.7 3.3 22 88-109 5-26 (227)
351 2f1r_A Molybdopterin-guanine d 79.2 1.3 4.3E-05 36.1 3.1 27 89-115 3-29 (171)
352 4tmk_A Protein (thymidylate ki 79.0 2.4 8.4E-05 35.8 5.0 31 87-117 2-32 (213)
353 2cdn_A Adenylate kinase; phosp 78.9 1.6 5.6E-05 36.2 3.9 26 87-112 19-44 (201)
354 1e6c_A Shikimate kinase; phosp 78.9 1.6 5.4E-05 35.1 3.7 23 89-111 3-25 (173)
355 3fb4_A Adenylate kinase; psych 78.9 1.4 4.9E-05 37.0 3.5 21 90-110 2-22 (216)
356 4f4c_A Multidrug resistance pr 78.6 4.3 0.00015 44.4 8.0 42 176-217 569-610 (1321)
357 3ug7_A Arsenical pump-driving 78.6 1.9 6.4E-05 39.6 4.5 34 90-123 28-61 (349)
358 3dl0_A Adenylate kinase; phosp 78.5 1.2 4.2E-05 37.4 3.0 20 90-109 2-21 (216)
359 2r62_A Cell division protease 78.5 0.64 2.2E-05 40.7 1.2 21 88-108 44-64 (268)
360 1w36_B RECB, exodeoxyribonucle 78.5 3.5 0.00012 44.5 7.2 52 90-141 18-81 (1180)
361 1yrb_A ATP(GTP)binding protein 78.5 2.3 7.7E-05 36.9 4.8 35 88-123 14-48 (262)
362 1ihu_A Arsenical pump-driving 78.5 2 6.9E-05 42.5 5.0 36 88-123 8-43 (589)
363 4eaq_A DTMP kinase, thymidylat 78.4 2.2 7.5E-05 36.5 4.6 34 87-121 25-58 (229)
364 1c4o_A DNA nucleotide excision 78.4 8.6 0.0003 38.6 9.6 77 109-191 432-519 (664)
365 1f2t_A RAD50 ABC-ATPase; DNA d 78.4 1.6 5.6E-05 34.4 3.5 17 89-105 24-40 (149)
366 3k1j_A LON protease, ATP-depen 78.3 2.6 8.9E-05 41.9 5.7 25 84-108 56-80 (604)
367 3kta_A Chromosome segregation 78.3 1.4 4.7E-05 35.9 3.2 17 90-106 28-44 (182)
368 3qf7_A RAD50; ABC-ATPase, ATPa 78.2 1.6 5.4E-05 40.4 3.8 19 90-108 25-43 (365)
369 1in4_A RUVB, holliday junction 78.1 3 0.0001 37.9 5.7 20 89-108 52-71 (334)
370 2ff7_A Alpha-hemolysin translo 78.1 0.93 3.2E-05 39.4 2.1 19 86-104 33-51 (247)
371 4g1u_C Hemin import ATP-bindin 78.0 1.2 3.9E-05 39.3 2.7 19 86-104 35-53 (266)
372 2ius_A DNA translocase FTSK; n 78.0 2.7 9.2E-05 40.7 5.5 24 87-110 166-189 (512)
373 3v9p_A DTMP kinase, thymidylat 78.0 1.7 5.7E-05 37.2 3.7 37 85-121 22-62 (227)
374 1g3q_A MIND ATPase, cell divis 77.8 2 6.8E-05 36.6 4.2 32 92-123 7-38 (237)
375 4e22_A Cytidylate kinase; P-lo 77.8 1.5 5E-05 38.2 3.3 23 86-108 25-47 (252)
376 3cmu_A Protein RECA, recombina 77.7 2.1 7.3E-05 48.3 5.2 47 86-133 1079-1125(2050)
377 3gfo_A Cobalt import ATP-bindi 77.6 0.94 3.2E-05 40.1 2.0 19 86-104 32-50 (275)
378 1g8p_A Magnesium-chelatase 38 77.6 0.93 3.2E-05 41.4 2.1 22 87-108 44-65 (350)
379 1ak2_A Adenylate kinase isoenz 77.5 1.9 6.4E-05 36.9 3.9 26 87-112 15-40 (233)
380 3lv8_A DTMP kinase, thymidylat 77.5 2.8 9.7E-05 36.0 5.0 32 87-118 26-57 (236)
381 3i32_A Heat resistant RNA depe 77.4 7.1 0.00024 34.8 7.8 80 98-185 12-102 (300)
382 1t5i_A C_terminal domain of A 77.3 5.9 0.0002 31.9 6.7 68 115-188 30-108 (172)
383 2ph1_A Nucleotide-binding prot 77.3 2 6.9E-05 37.5 4.1 32 92-123 23-54 (262)
384 3nh6_A ATP-binding cassette SU 77.3 0.71 2.4E-05 41.6 1.1 19 86-104 78-96 (306)
385 1hyq_A MIND, cell division inh 77.2 2.4 8.2E-05 36.8 4.6 33 91-123 6-38 (263)
386 3be4_A Adenylate kinase; malar 77.1 1.9 6.6E-05 36.3 3.8 25 88-112 5-29 (217)
387 3iqw_A Tail-anchored protein t 77.1 2.6 8.7E-05 38.4 4.8 36 88-123 16-51 (334)
388 3kjh_A CO dehydrogenase/acetyl 77.1 1.9 6.5E-05 37.0 3.9 32 91-122 3-34 (254)
389 3p32_A Probable GTPase RV1496/ 76.8 2.5 8.7E-05 38.8 4.8 35 89-123 80-114 (355)
390 1sgw_A Putative ABC transporte 76.8 1.1 3.7E-05 38.0 2.1 19 86-104 33-51 (214)
391 3bs4_A Uncharacterized protein 76.7 3 0.0001 36.5 4.9 54 87-141 20-73 (260)
392 3cio_A ETK, tyrosine-protein k 76.7 2.8 9.6E-05 37.5 4.9 34 89-122 105-139 (299)
393 4dzz_A Plasmid partitioning pr 76.7 1.9 6.4E-05 35.8 3.6 103 93-222 7-111 (206)
394 1mv5_A LMRA, multidrug resista 76.6 1 3.5E-05 39.0 1.9 19 86-104 26-44 (243)
395 1qf9_A UMP/CMP kinase, protein 76.6 1.8 6.3E-05 35.3 3.5 22 89-110 7-28 (194)
396 1iy2_A ATP-dependent metallopr 76.6 1.6 5.5E-05 38.5 3.3 18 89-106 74-91 (278)
397 2jaq_A Deoxyguanosine kinase; 76.5 1.9 6.5E-05 35.6 3.6 23 90-112 2-24 (205)
398 2i4i_A ATP-dependent RNA helic 76.4 6.4 0.00022 36.6 7.7 66 114-185 274-350 (417)
399 2pt5_A Shikimate kinase, SK; a 76.2 2.1 7.1E-05 34.2 3.6 21 90-110 2-22 (168)
400 2pze_A Cystic fibrosis transme 76.1 1.1 3.9E-05 38.3 2.1 19 86-104 32-50 (229)
401 3q9l_A Septum site-determining 76.1 2.3 7.9E-05 36.8 4.2 32 92-123 7-38 (260)
402 2pcj_A ABC transporter, lipopr 76.1 1.1 3.9E-05 38.2 2.1 19 86-104 28-46 (224)
403 3pxg_A Negative regulator of g 76.0 2.6 9E-05 40.4 4.9 26 87-112 200-225 (468)
404 2vli_A Antibiotic resistance p 75.9 1.3 4.5E-05 36.0 2.4 23 87-109 4-26 (183)
405 3ice_A Transcription terminati 75.8 3.2 0.00011 38.5 5.1 37 75-111 158-197 (422)
406 3tqf_A HPR(Ser) kinase; transf 75.7 1.7 5.7E-05 35.4 2.8 23 87-109 15-37 (181)
407 2if2_A Dephospho-COA kinase; a 75.7 1.7 5.9E-05 36.1 3.1 19 90-108 3-21 (204)
408 1e4v_A Adenylate kinase; trans 75.5 2 6.9E-05 36.1 3.5 23 90-112 2-24 (214)
409 2bbw_A Adenylate kinase 4, AK4 75.3 1.9 6.6E-05 37.2 3.4 22 87-108 26-47 (246)
410 3cwq_A Para family chromosome 75.3 3.2 0.00011 34.8 4.7 30 92-122 5-34 (209)
411 2cbz_A Multidrug resistance-as 75.3 1.8 6.3E-05 37.2 3.2 19 86-104 29-47 (237)
412 3umf_A Adenylate kinase; rossm 75.2 1.7 5.7E-05 36.9 2.8 25 86-110 27-51 (217)
413 2ixe_A Antigen peptide transpo 75.1 1.2 4.3E-05 39.2 2.1 19 86-104 43-61 (271)
414 1ji0_A ABC transporter; ATP bi 75.1 1.3 4.3E-05 38.3 2.1 19 86-104 30-48 (240)
415 3sr0_A Adenylate kinase; phosp 75.0 1.8 6.2E-05 36.3 3.0 21 90-110 2-22 (206)
416 1htw_A HI0065; nucleotide-bind 74.9 3 0.0001 33.3 4.2 20 86-105 31-50 (158)
417 2iut_A DNA translocase FTSK; n 74.8 3.5 0.00012 40.3 5.4 27 87-113 213-239 (574)
418 2woj_A ATPase GET3; tail-ancho 74.8 3.2 0.00011 38.2 4.9 36 89-124 19-56 (354)
419 1jjv_A Dephospho-COA kinase; P 74.7 1.8 6.2E-05 36.0 3.0 19 90-108 4-22 (206)
420 2x8a_A Nuclear valosin-contain 74.7 1.7 6E-05 38.3 3.0 17 89-105 45-61 (274)
421 1g6h_A High-affinity branched- 74.7 1.3 4.5E-05 38.7 2.1 19 86-104 31-49 (257)
422 1qvr_A CLPB protein; coiled co 74.7 2.5 8.5E-05 44.0 4.6 26 89-114 589-614 (854)
423 1b0u_A Histidine permease; ABC 74.6 1.3 4.4E-05 38.8 2.1 19 86-104 30-48 (262)
424 1cp2_A CP2, nitrogenase iron p 74.5 3.3 0.00011 36.0 4.8 32 91-122 4-35 (269)
425 1uf9_A TT1252 protein; P-loop, 74.3 1.9 6.3E-05 35.7 3.0 20 89-108 9-28 (203)
426 1ukz_A Uridylate kinase; trans 74.3 1.9 6.5E-05 35.8 3.0 20 89-108 16-35 (203)
427 1g41_A Heat shock protein HSLU 74.2 2.2 7.4E-05 40.5 3.6 22 88-109 50-71 (444)
428 1vpl_A ABC transporter, ATP-bi 74.1 1.4 4.7E-05 38.6 2.1 19 86-104 39-57 (256)
429 3of5_A Dethiobiotin synthetase 74.1 3.5 0.00012 35.2 4.7 35 90-124 6-41 (228)
430 2qm8_A GTPase/ATPase; G protei 74.1 2.9 0.0001 38.1 4.4 38 86-123 53-90 (337)
431 3end_A Light-independent proto 73.9 3.1 0.00011 37.2 4.5 36 87-122 40-75 (307)
432 2olj_A Amino acid ABC transpor 73.9 1.4 4.8E-05 38.7 2.1 19 86-104 48-66 (263)
433 3ea0_A ATPase, para family; al 73.6 3.7 0.00013 35.0 4.8 32 92-123 9-41 (245)
434 2p5t_B PEZT; postsegregational 73.5 1.4 4.9E-05 38.3 2.1 22 88-109 32-53 (253)
435 2ghi_A Transport protein; mult 73.2 2.2 7.5E-05 37.3 3.2 19 86-104 44-62 (260)
436 2afh_E Nitrogenase iron protei 73.0 3.5 0.00012 36.5 4.6 32 91-122 5-36 (289)
437 2yz2_A Putative ABC transporte 72.8 1.5 5.2E-05 38.5 2.1 19 86-104 31-49 (266)
438 1a7j_A Phosphoribulokinase; tr 72.7 1.8 6.1E-05 38.6 2.5 22 89-110 6-27 (290)
439 2ihy_A ABC transporter, ATP-bi 72.6 1.5 5.3E-05 38.8 2.1 19 86-104 45-63 (279)
440 3io3_A DEHA2D07832P; chaperone 72.6 4.4 0.00015 37.1 5.2 36 89-124 19-56 (348)
441 2xb4_A Adenylate kinase; ATP-b 72.6 2.7 9.4E-05 35.6 3.6 23 90-112 2-24 (223)
442 2jeo_A Uridine-cytidine kinase 72.5 1.9 6.6E-05 37.2 2.7 23 86-108 23-45 (245)
443 3qxc_A Dethiobiotin synthetase 72.4 4.2 0.00014 35.1 4.8 36 89-124 22-58 (242)
444 2p67_A LAO/AO transport system 72.3 3.4 0.00012 37.7 4.4 37 87-123 55-91 (341)
445 2d2e_A SUFC protein; ABC-ATPas 72.2 2.5 8.7E-05 36.6 3.4 19 86-104 27-45 (250)
446 3aez_A Pantothenate kinase; tr 72.2 2.4 8.3E-05 38.2 3.4 22 87-108 89-110 (312)
447 3f9v_A Minichromosome maintena 72.1 1.6 5.6E-05 43.3 2.3 15 90-104 329-343 (595)
448 3qks_A DNA double-strand break 72.1 2.8 9.5E-05 35.0 3.5 18 89-106 24-41 (203)
449 2zu0_C Probable ATP-dependent 72.0 2.5 8.7E-05 37.1 3.4 19 86-104 44-62 (267)
450 2oze_A ORF delta'; para, walke 72.0 3.8 0.00013 36.4 4.6 36 87-122 33-71 (298)
451 2h17_A ADP-ribosylation factor 71.9 1.9 6.5E-05 34.9 2.4 30 75-104 8-37 (181)
452 1vht_A Dephospho-COA kinase; s 71.6 2 6.8E-05 36.2 2.5 21 88-108 4-24 (218)
453 2nq2_C Hypothetical ABC transp 71.4 2.1 7.1E-05 37.3 2.6 19 86-104 29-47 (253)
454 3fvq_A Fe(3+) IONS import ATP- 71.4 2 6.9E-05 39.5 2.6 19 86-104 28-46 (359)
455 3fht_A ATP-dependent RNA helic 71.2 9.3 0.00032 35.3 7.3 67 115-187 265-342 (412)
456 3tmk_A Thymidylate kinase; pho 71.1 11 0.00037 31.8 7.0 36 87-124 4-39 (216)
457 2oca_A DAR protein, ATP-depend 70.9 10 0.00035 36.5 7.8 71 114-189 345-426 (510)
458 2grj_A Dephospho-COA kinase; T 70.7 2.6 9.1E-05 34.9 3.0 41 88-134 12-52 (192)
459 2qi9_C Vitamin B12 import ATP- 70.3 2.8 9.5E-05 36.4 3.2 19 86-104 24-42 (249)
460 3b5x_A Lipid A export ATP-bind 70.3 3 0.0001 41.2 3.8 20 86-105 367-386 (582)
461 3bfv_A CAPA1, CAPB2, membrane 70.1 4 0.00014 35.9 4.2 34 89-122 83-117 (271)
462 3hjn_A DTMP kinase, thymidylat 69.8 5.1 0.00017 33.2 4.6 38 91-128 3-41 (197)
463 2xj4_A MIPZ; replication, cell 69.8 3.2 0.00011 36.7 3.5 29 94-122 11-39 (286)
464 3pey_A ATP-dependent RNA helic 69.8 7.3 0.00025 35.7 6.2 70 115-190 242-322 (395)
465 2www_A Methylmalonic aciduria 69.7 4.5 0.00015 37.1 4.6 36 88-123 74-109 (349)
466 3r20_A Cytidylate kinase; stru 69.6 3.8 0.00013 35.1 3.8 23 87-109 8-30 (233)
467 3la6_A Tyrosine-protein kinase 69.5 5.1 0.00017 35.5 4.8 34 89-122 93-127 (286)
468 1z47_A CYSA, putative ABC-tran 69.1 2.4 8.4E-05 38.9 2.6 32 176-207 160-191 (355)
469 3auy_A DNA double-strand break 68.8 3.2 0.00011 38.4 3.5 17 89-105 26-42 (371)
470 3rlf_A Maltose/maltodextrin im 68.8 2.5 8.4E-05 39.3 2.6 19 86-104 27-45 (381)
471 2yyz_A Sugar ABC transporter, 68.7 2.5 8.6E-05 38.9 2.6 32 176-207 148-179 (359)
472 3pxi_A Negative regulator of g 68.7 3.3 0.00011 42.5 3.8 26 87-112 200-225 (758)
473 3fgn_A Dethiobiotin synthetase 68.3 5.3 0.00018 34.7 4.5 33 92-124 31-63 (251)
474 3k9g_A PF-32 protein; ssgcid, 68.2 3.9 0.00013 35.6 3.7 28 94-122 34-61 (267)
475 1q3t_A Cytidylate kinase; nucl 68.0 3.6 0.00012 35.1 3.4 24 86-109 14-37 (236)
476 2zj8_A DNA helicase, putative 67.9 3 0.0001 42.5 3.3 34 386-419 289-322 (720)
477 1uj2_A Uridine-cytidine kinase 67.9 3.1 0.00011 36.0 3.0 21 89-109 23-43 (252)
478 2it1_A 362AA long hypothetical 67.9 2.6 9E-05 38.8 2.6 31 177-207 149-179 (362)
479 1svm_A Large T antigen; AAA+ f 67.7 3.5 0.00012 38.2 3.4 23 86-108 167-189 (377)
480 3tui_C Methionine import ATP-b 67.5 2.7 9.3E-05 38.7 2.6 42 176-217 178-221 (366)
481 2npi_A Protein CLP1; CLP1-PCF1 67.1 2.7 9.1E-05 40.2 2.6 21 86-106 136-156 (460)
482 1wcv_1 SOJ, segregation protei 67.1 2.9 0.0001 36.2 2.7 28 95-122 14-41 (257)
483 2onk_A Molybdate/tungstate ABC 67.0 2.8 9.5E-05 36.2 2.5 17 87-104 24-40 (240)
484 1tf7_A KAIC; homohexamer, hexa 66.9 4.5 0.00016 39.3 4.3 38 86-123 37-75 (525)
485 3sop_A Neuronal-specific septi 66.9 3.9 0.00013 35.9 3.4 15 90-104 4-18 (270)
486 2bbs_A Cystic fibrosis transme 66.9 3.6 0.00012 36.6 3.2 19 86-104 62-80 (290)
487 1hv8_A Putative ATP-dependent 66.7 7.7 0.00026 35.1 5.6 70 112-187 234-314 (367)
488 2pjz_A Hypothetical protein ST 66.7 2.4 8.3E-05 37.1 2.0 33 177-209 144-176 (263)
489 1v43_A Sugar-binding transport 66.6 2.9 9.9E-05 38.7 2.6 31 177-207 157-187 (372)
490 1g29_1 MALK, maltose transport 66.5 2.9 0.0001 38.7 2.6 31 177-207 155-185 (372)
491 4akg_A Glutathione S-transfera 66.4 6 0.00021 46.2 5.6 26 85-110 920-945 (2695)
492 1bg2_A Kinesin; motor protein, 66.4 4.9 0.00017 36.4 4.0 20 85-104 73-94 (325)
493 3ake_A Cytidylate kinase; CMP 66.3 4.3 0.00015 33.5 3.5 21 90-110 4-24 (208)
494 1ltq_A Polynucleotide kinase; 66.2 3.4 0.00012 36.7 3.0 19 90-108 4-22 (301)
495 2vp4_A Deoxynucleoside kinase; 66.2 2.7 9.2E-05 35.8 2.2 18 87-104 19-36 (230)
496 2p6r_A Afuhel308 helicase; pro 65.8 3.8 0.00013 41.5 3.6 33 387-419 292-324 (702)
497 4akg_A Glutathione S-transfera 65.7 2.9 9.8E-05 48.8 2.8 21 85-105 1264-1284(2695)
498 2f6r_A COA synthase, bifunctio 65.5 3.4 0.00012 36.5 2.8 21 89-109 76-96 (281)
499 2wsm_A Hydrogenase expression/ 65.4 7 0.00024 32.6 4.7 35 87-122 29-63 (221)
500 3gd7_A Fusion complex of cysti 65.4 4.1 0.00014 38.0 3.4 20 86-105 45-64 (390)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-46 Score=366.99 Aligned_cols=339 Identities=17% Similarity=0.252 Sum_probs=267.7
Q ss_pred hhhhh-cccCCCCCCccc-ccceecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhc
Q psy2764 10 LGRVL-RGQNSGSNRREV-DIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEE 87 (419)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~ 87 (419)
..++| +..++|++|..+ ++++...+.+.|. +...|.+ +++++.+. +.|.+++|..| ||+|+++++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~f~~-~~l~~~l~---~~l~~~g~~~p---t~iQ~~ai~~i~~ 92 (434)
T 2db3_A 22 AIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQ--PIQHFTS-ADLRDIII---DNVNKSGYKIP---TPIQKCSIPVISS 92 (434)
T ss_dssp HHHHTSCCCCCCTTGGGGGGSCEEEESSSCCC--CCCCGGG-SCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHT
T ss_pred HHHHhhcCcccccChhhhcCceeEecCCCCCC--CcCChhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhc
Confidence 44567 677899999999 7899988888877 4567888 99999998 88888888876 9999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHh--------cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee---
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQ--------NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI--- 152 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~--------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~--- 152 (419)
|++++++||||||||++|++++.... ..++++||++||++|+.|+++.+.++... ++.++|+...
T Consensus 93 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 172 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ 172 (434)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH
Confidence 99999999999999999888766332 13679999999999999999999998754 5667777643
Q ss_pred ----cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc--CCCCcEEEEeeecCChHH-
Q psy2764 153 ----NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL--PKEVCIVMLSATVPNTLE- 225 (419)
Q Consensus 153 ----~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~--~~~~~~l~~SAT~~~~~~- 225 (419)
..+++|+|+||++|.+++.++...+.+++++|+||||++++.++...+..++..+ +.+.|+++||||+++...
T Consensus 173 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~ 252 (434)
T 2db3_A 173 NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQR 252 (434)
T ss_dssp HHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHH
T ss_pred HHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHH
Confidence 3468999999999999998888889999999999999999999999999998875 568999999999987654
Q ss_pred HHH-HhcCcCCccEEEEecCC--CCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCC
Q psy2764 226 FAD-WVGNTKKTKVYVVSTLK--RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKL 302 (419)
Q Consensus 226 ~~~-~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (419)
++. ++.. ...+..... ....+.+. +..+
T Consensus 253 ~~~~~l~~----~~~i~~~~~~~~~~~i~~~------------~~~~--------------------------------- 283 (434)
T 2db3_A 253 MAGEFLKN----YVFVAIGIVGGACSDVKQT------------IYEV--------------------------------- 283 (434)
T ss_dssp HHHTTCSS----CEEEEESSTTCCCTTEEEE------------EEEC---------------------------------
T ss_pred HHHHhccC----CEEEEeccccccccccceE------------EEEe---------------------------------
Confidence 333 2221 111111111 01111111 1111
Q ss_pred CCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCch
Q psy2764 303 NGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALP 381 (419)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~ 381 (419)
........+.+.+..... ++||||++++.|+.+++.|...|+.+...|+.+ ..+|.+++++|++|+.
T Consensus 284 -------~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~---- 351 (434)
T 2db3_A 284 -------NKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM---- 351 (434)
T ss_dssp -------CGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSC----
T ss_pred -------CcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCC----
Confidence 011223566666666544 499999999999999999999999888766666 7899999999999998
Q ss_pred hhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCcC
Q psy2764 382 QVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 382 ~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~i 418 (419)
+|||||+++++|||+|+++ +|.....+++...|.|+.
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCT
T ss_pred cEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccC
Confidence 9999999999999999755 567778889888887763
No 2
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-43 Score=373.28 Aligned_cols=344 Identities=41% Similarity=0.640 Sum_probs=264.9
Q ss_pred cccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceE
Q psy2764 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLV 146 (419)
Q Consensus 67 ~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~ 146 (419)
...+||+|+++|.+|++.+..|++++++||||||||++|.+++......+.+++|++||++|+.|+++.+.++++.++++
T Consensus 178 ~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgll 257 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 257 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEE
Confidence 45677889999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred eccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHH
Q psy2764 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEF 226 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 226 (419)
+|+.+...+++|+|+||++|.+++..+...+.++++|||||||++.+.+++..++.++..+++.+|+++||||+++..++
T Consensus 258 tGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~ 337 (1108)
T 3l9o_A 258 TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEF 337 (1108)
T ss_dssp CSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHH
T ss_pred eCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHH
Confidence 99999999999999999999999988887788999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCC---CCCC-
Q psy2764 227 ADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSG---GGKL- 302 (419)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 302 (419)
+.|+.......+.++....++.++.++++.... ...+..++..+.+....+...+.............. +...
T Consensus 338 a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 414 (1108)
T 3l9o_A 338 AEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG---DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQ 414 (1108)
T ss_dssp HHHHHHHTCSCEEEEEECCCSSCEEEEEEETTS---SCCEEEEETTTEECHHHHHHHHTTC-------------------
T ss_pred HHHHHhhcCCCeEEEecCCCcccceEEEeecCC---cceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccc
Confidence 999988766677888889999999887765443 223333344444444444433321100000000000 0000
Q ss_pred --CCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCC--------------------------
Q psy2764 303 --NGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFST-------------------------- 354 (419)
Q Consensus 303 --~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~-------------------------- 354 (419)
.+..........+..++..+......++||||+++..|+.++..|...++..
T Consensus 415 ~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 494 (1108)
T 3l9o_A 415 TYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELP 494 (1108)
T ss_dssp ----------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCH
T ss_pred ccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 0000001113445556666667777789999999999999999997754432
Q ss_pred -------------hhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh--------------hhH
Q psy2764 355 -------------ATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP--------------ILK 406 (419)
Q Consensus 355 -------------~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~--------------~~r 406 (419)
..+|+.+ ...|..+++.|++|.. +|||||+++++|||+|.+++.. .-.
T Consensus 495 ~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~i----kVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~ 570 (1108)
T 3l9o_A 495 QIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFL----KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 570 (1108)
T ss_dssp HHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCC----CEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHH
T ss_pred hHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCC----eEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHH
Confidence 2234444 7789999999999999 9999999999999999887632 334
Q ss_pred HHHHHHHhcCc
Q psy2764 407 EIVEMLFQKGL 417 (419)
Q Consensus 407 ~~ie~~f~~g~ 417 (419)
.+++...|.|+
T Consensus 571 eyiQr~GRAGR 581 (1108)
T 3l9o_A 571 EYIQMSGRAGR 581 (1108)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHhhcccCC
Confidence 68888887775
No 3
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=350.10 Aligned_cols=347 Identities=47% Similarity=0.798 Sum_probs=267.8
Q ss_pred cccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceE
Q psy2764 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLV 146 (419)
Q Consensus 67 ~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~ 146 (419)
...+||+|+++|.+|++.+..+++++++||||+|||++|.+++......+.++||++||++|+.|+++.+.+.++.++++
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 56778899999999999999999999999999999999988888777788999999999999999999999999999999
Q ss_pred eccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHH
Q psy2764 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEF 226 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 226 (419)
+|+.+...+++|+|+||++|.+++.++...+.++++|||||||++.+.+++..++.++..++.++|++++|||+++..++
T Consensus 160 tGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~ 239 (1010)
T 2xgj_A 160 TGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEF 239 (1010)
T ss_dssp CSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHH
T ss_pred eCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHH
Confidence 99999999999999999999999988878889999999999999999889999999999999999999999999999999
Q ss_pred HHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCC
Q psy2764 227 ADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPF 306 (419)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (419)
++|+.......+.++....+|.++.++++.... ...+..++..+.+...++...+............... ..+.+
T Consensus 240 a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~g~~ 314 (1010)
T 2xgj_A 240 AEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG---DGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD--SRGKK 314 (1010)
T ss_dssp HHHHHHHHTSCEEEEEECCCSSCEEEEEEETTS---SCCEEEECTTCCBCHHHHHHHHHTCC------------------
T ss_pred HHHHHhhcCCCeEEEecCCCcccceEEEEecCC---cceeeeeccccccchHHHHHHHHHHhhhhcccccccc--ccccc
Confidence 999886545566777778889998887765432 1223333444444444444333211000000000000 00000
Q ss_pred CCC--------cchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCC
Q psy2764 307 TRG--------AEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDR 378 (419)
Q Consensus 307 ~~~--------~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~ 378 (419)
... .....+..+.+.+......++||||+++..|+.++..|...++........+.......++.+. +.+.
T Consensus 315 ~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~-~~d~ 393 (1010)
T 2xgj_A 315 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP-ETDR 393 (1010)
T ss_dssp --------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSC-GGGT
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcc-hhhh
Confidence 000 0133455677777666777899999999999999999999898877655555444444555554 4444
Q ss_pred CchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 379 ALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 379 ~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
....+.-...++.+||.++|++|++.+|..++++|++|.++
T Consensus 394 ~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik 434 (1010)
T 2xgj_A 394 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 434 (1010)
T ss_dssp TCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS
T ss_pred cchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc
Confidence 44556666788999999999999999999999999999875
No 4
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.6e-41 Score=353.27 Aligned_cols=371 Identities=52% Similarity=0.908 Sum_probs=295.4
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
...|.+..+++..+.++.+.++.+...+||+|+++|.++++.+..|++++++||||+|||++|++++......+.++||+
T Consensus 9 ~~~wa~~~~~~~~~~~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl 88 (997)
T 4a4z_A 9 KKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYT 88 (997)
T ss_dssp CCCSEEECCTTCCCTTHHHHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccccchhcccccccchhhhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 45787777777777777788888889999999999999999999999999999999999999999998888889999999
Q ss_pred cccHHHHHHHHHHHHHhcc--ccceEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHH
Q psy2764 123 SPIKALSNQKYRDFRETFQ--DVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVW 200 (419)
Q Consensus 123 ~Pt~~L~~q~~~~~~~~~~--~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~ 200 (419)
+|+++|+.|+++.+.+.+. .++.++|+.....+.+|+|+||++|.+++......+.++++|||||||++.+++++..+
T Consensus 89 ~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~ 168 (997)
T 4a4z_A 89 SPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVW 168 (997)
T ss_dssp ESCGGGHHHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCH
T ss_pred eCCHHHHHHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHH
Confidence 9999999999999999876 58889999999999999999999999999888778899999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhh
Q psy2764 201 EEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGY 280 (419)
Q Consensus 201 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (419)
+.++..++++.|++++|||+++..++++|++......+.++....++.|+.+++..... ....++....+...+|
T Consensus 169 e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~-----~~~~~~~~~~~~~~~~ 243 (997)
T 4a4z_A 169 EEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKE-----LIPVINQNSEFLEANF 243 (997)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTE-----EEEEECTTCCBCHHHH
T ss_pred HHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCc-----chhcccchhhhhHHHH
Confidence 99999999999999999999999999999997766778888899999999887765322 2223333444444444
Q ss_pred hHHHHHHHHhhhhcCC--------------C-------C-----CCC-----------CCC---------CCCCCcchhH
Q psy2764 281 LAAKEVKCRKQLEKGG--------------S-------G-----GGK-----------LNG---------PFTRGAEKNL 314 (419)
Q Consensus 281 ~~~~~~~~~~~~~~~~--------------~-------~-----~~~-----------~~~---------~~~~~~~~~~ 314 (419)
................ . . +.. ..+ .......+..
T Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (997)
T 4a4z_A 244 RKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT 323 (997)
T ss_dssp HHHHHHHC-----------------------------------------------------------------CCCCTTH
T ss_pred HHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhH
Confidence 4332221110000000 0 0 000 000 0111234556
Q ss_pred HHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhh
Q psy2764 315 FISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGI 394 (419)
Q Consensus 315 ~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GI 394 (419)
+..+.+.+......++||||+|++.|+.++..|...++........+...-.+.+..+. ..+.....+.-....+.+||
T Consensus 324 ~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~-~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLK-KEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSC-HHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcc-hhhhcchhHHHHHHHhhcCe
Confidence 77888888888888999999999999999999999999887766666555555666665 34445556777888999999
Q ss_pred hhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 395 GVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 395 Di~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
.++|++|++.+|..++++|++|.++
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~k 427 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIK 427 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCc
Confidence 9999999999999999999999875
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=329.68 Aligned_cols=321 Identities=18% Similarity=0.225 Sum_probs=241.9
Q ss_pred ecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 31 LKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
...+.+.|. +...|.+ +++++.+. +.|..++|..| +|+|.++++.+..+++++++||||+|||++|++++.
T Consensus 4 ~~~~~~~p~--~~~~f~~-~~l~~~l~---~~l~~~~~~~~---~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l 74 (417)
T 2i4i_A 4 EATGNNCPP--HIESFSD-VEMGEIIM---GNIELTRYTRP---TPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 74 (417)
T ss_dssp EEESTTCCC--CCSSGGG-SCCCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCcCCc--ccCCHhh-CCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHH
Confidence 344555555 4456888 99999998 88888888765 999999999999999999999999999999887765
Q ss_pred HHh-c--------------------CCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcE
Q psy2764 111 LSQ-N--------------------HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASC 158 (419)
Q Consensus 111 ~~~-~--------------------~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~I 158 (419)
... . .++++||++||++|+.|+++.+.++... +..++|+... ..+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I 154 (417)
T 2i4i_A 75 SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 154 (417)
T ss_dssp HHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSE
T ss_pred HHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCE
Confidence 331 1 1367999999999999999999998654 4556676542 346899
Q ss_pred EEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc--CC--CCcEEEEeeecCChHH-HH-HHhcC
Q psy2764 159 LVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL--PK--EVCIVMLSATVPNTLE-FA-DWVGN 232 (419)
Q Consensus 159 iv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~-~~-~~l~~ 232 (419)
+|+||+++..++......+.+++++|+||||++.+.++...+..++... +. ..|++++|||+++... +. .++..
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 234 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDE 234 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSS
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCC
Confidence 9999999999998887788999999999999998888999998888743 32 6899999999987654 33 33332
Q ss_pred cCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcch
Q psy2764 233 TKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEK 312 (419)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (419)
+..+........+..+...+.... ..
T Consensus 235 --~~~~~~~~~~~~~~~i~~~~~~~~----------------------------------------------------~~ 260 (417)
T 2i4i_A 235 --YIFLAVGRVGSTSENITQKVVWVE----------------------------------------------------ES 260 (417)
T ss_dssp --CEEEEEC----CCSSEEEEEEECC----------------------------------------------------GG
T ss_pred --CEEEEeCCCCCCccCceEEEEEec----------------------------------------------------cH
Confidence 111111000111111111111110 11
Q ss_pred hHHHHHHHHHHHc-CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHH
Q psy2764 313 NLFISFLNYLRKS-QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLL 390 (419)
Q Consensus 313 ~~~~~l~~~l~~~-~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l 390 (419)
.....+.+.+... ...++||||++++.|+.+++.|...|+.+...++.+ .++|.+++++|++|+. ++||||+++
T Consensus 261 ~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~----~vlvaT~~~ 336 (417)
T 2i4i_A 261 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS----PILVATAVA 336 (417)
T ss_dssp GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSS----CEEEECHHH
T ss_pred hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCC----CEEEECChh
Confidence 2234566666554 457899999999999999999999998887766666 7889999999999998 899999999
Q ss_pred hhhhhhccC------CCChhhHHHHHHHHhcCcC
Q psy2764 391 KNGIGVHHS------GILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 391 ~~GIDi~~~------~l~~~~r~~ie~~f~~g~i 418 (419)
++|||+|++ ++|.....+++...|.|+.
T Consensus 337 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 337 ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp HTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC-
T ss_pred hcCCCcccCCEEEEEcCCCCHHHHHHhcCccccC
Confidence 999999865 5677778888888887753
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.6e-41 Score=324.76 Aligned_cols=309 Identities=15% Similarity=0.188 Sum_probs=230.2
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEE
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTI 120 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~l 120 (419)
..|.+ +++++.+. +.+.+.++..| +++|.++++.+..++++++++|||+|||++|++++..... .+.++|
T Consensus 40 ~~f~~-~~l~~~~~---~~l~~~~~~~~---~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (414)
T 3eiq_A 40 DSFDD-MNLSESLL---RGIYAYGFEKP---SAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL 112 (414)
T ss_dssp CCGGG-GCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEE
T ss_pred cCHhh-CCCCHHHH---HHHHHcCCCCC---CHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEE
Confidence 45666 88988888 88888777765 9999999999999999999999999999998877775543 578899
Q ss_pred EEcccHHHHHHHHHHHHHhccc----cceEeccceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 121 YTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
|++||++|+.|+++.+.+++.. +....|+.... ..++|+|+||+++.+++......+.++++||+|||
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 9999999999999999998754 33445544321 46899999999999999888778889999999999
Q ss_pred cccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEe--cCCCCccceEEEEeCCcccccce
Q psy2764 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVS--TLKRPVPLKHFLYVGPVLEKNQL 265 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 265 (419)
|++.+.++...+..++..++++.|++++|||+++... +...+.. ....+.. .......+...+...
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------- 261 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMR---DPIRILVKKEELTLEGIRQFYINV-------- 261 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCS---SCEEECCCCCCCCTTSCCEEEEEC--------
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcC---CCEEEEecCCccCCCCceEEEEEe--------
Confidence 9998888889999999999899999999999986543 3322221 1111110 001111111111100
Q ss_pred eeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHH
Q psy2764 266 FLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAA 345 (419)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~ 345 (419)
.........+.+.+.....+++||||++++.|+.+++
T Consensus 262 -------------------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~ 298 (414)
T 3eiq_A 262 -------------------------------------------EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE 298 (414)
T ss_dssp -------------------------------------------SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHH
T ss_pred -------------------------------------------ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH
Confidence 1112234567777777777889999999999999999
Q ss_pred HhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 346 NLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 346 ~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
.|...++.....++.+ .++|.++++.|++|.. ++||||+++++|||+|++++ +.....+++...|.|+
T Consensus 299 ~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~----~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR 373 (414)
T 3eiq_A 299 KMHARDFTVSAMHGDMDQKERDVIMREFRSGSS----RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 373 (414)
T ss_dssp HHHTTTCCCEEC---CHHHHHHHHHHHHSCC-------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC--
T ss_pred HHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCC----cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccC
Confidence 9999999888866665 7889999999999998 99999999999999997765 5556677776665554
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.4e-41 Score=324.07 Aligned_cols=311 Identities=13% Similarity=0.192 Sum_probs=240.6
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~ 119 (419)
...|.+ +++++.+. +.|.++|+..| +|+|+++++.+..++++++++|||+|||++|++++.... ..+.++
T Consensus 36 ~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~ 108 (410)
T 2j0s_A 36 TPTFDT-MGLREDLL---RGIYAYGFEKP---SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 108 (410)
T ss_dssp CCSGGG-GCCCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCE
T ss_pred CCCHhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceE
Confidence 345777 99999988 88888888765 999999999999999999999999999999887777554 357899
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
||++||++|+.|+++.+.++... ++.+.|+... ..+++|+|+||+++..++......+.+++++|+|||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa 188 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA 188 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence 99999999999999999998754 4456665532 235799999999999999888778889999999999
Q ss_pred cccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEe--cCCCCccceEEEEeCCccccccee
Q psy2764 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVS--TLKRPVPLKHFLYVGPVLEKNQLF 266 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 266 (419)
|++.+.++...+..++..++++.|++++|||+++... ++..........+.. .......+...+
T Consensus 189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 254 (410)
T 2j0s_A 189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL--EMTNKFMTDPIRILVKRDELTLEGIKQFF------------ 254 (410)
T ss_dssp HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHH--TTGGGTCSSCEEECCCGGGCSCTTEEEEE------------
T ss_pred HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHH--HHHHHHcCCCEEEEecCccccCCCceEEE------------
Confidence 9999989999999999999889999999999986542 211111111111110 000111111111
Q ss_pred eeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHH
Q psy2764 267 LIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346 (419)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~ 346 (419)
..+ .......+.+.+.+......++||||++++.++.+++.
T Consensus 255 ~~~---------------------------------------~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~ 295 (410)
T 2j0s_A 255 VAV---------------------------------------EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 295 (410)
T ss_dssp EEE---------------------------------------SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHH
T ss_pred EEe---------------------------------------CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHH
Confidence 111 01112345666777666777899999999999999999
Q ss_pred hhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 347 LLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 347 L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
|...|+.....++.+ .++|.+++++|++|+. ++||+|+++++|||+|+++ +|.....+++...|.|+
T Consensus 296 L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~----~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR 369 (410)
T 2j0s_A 296 MREANFTVSSMHGDMPQKERESIMKEFRSGAS----RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 369 (410)
T ss_dssp HHHTTCCCEEECTTSCHHHHHHHHHHHHHTSS----CEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSG
T ss_pred HHhCCCceEEeeCCCCHHHHHHHHHHHHCCCC----CEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccC
Confidence 999999888877666 7889999999999998 8999999999999998654 56667778888877765
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.8e-40 Score=317.38 Aligned_cols=313 Identities=14% Similarity=0.159 Sum_probs=237.0
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHHHHHHHhc---CC
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HK 116 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~~i~~~~~---~~ 116 (419)
+...|.+ +++++.+. +.|.++++..| +|+|.++++.+..+ ++++++||||+|||++|++++..... .+
T Consensus 23 ~~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~ 95 (412)
T 3fht_A 23 SVKSFEE-LRLKPQLL---QGVYAMGFNRP---SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95 (412)
T ss_dssp CSSCTGG-GTCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred ccCCHhh-CCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCC
Confidence 4556777 99999998 88888888766 99999999999876 99999999999999998877765533 44
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccceec----CCCcEEEEcHHHHHHHHhc-CCCCCCCccEEEEe
Q psy2764 117 TRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQIN----TTASCLVMTTEILRSMLYR-GSDVLRDLEYVIFD 186 (419)
Q Consensus 117 ~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIiD 186 (419)
+++||++||++|+.|+++.+.++... ++...|+.... ..++|+|+||+++..++.. ....+.+++++|+|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 58999999999999999999987653 44455544332 3479999999999988865 44567899999999
Q ss_pred CCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccc
Q psy2764 187 EVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQ 264 (419)
Q Consensus 187 E~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (419)
|||++.+ .++...+..+...++.+.|++++|||+++... +....... +..+...........+...+...
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------- 247 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLKREEETLDTIKQYYVLC------- 247 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSS-CEEECCCGGGSSCTTEEEEEEEC-------
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCC-CeEEeeccccccccCceEEEEEc-------
Confidence 9998866 57778888888888889999999999987653 33332221 11110000011111111111110
Q ss_pred eeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHH
Q psy2764 265 LFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNA 344 (419)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~ 344 (419)
.........+.+.+.....+++||||++++.|+.++
T Consensus 248 --------------------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 248 --------------------------------------------SSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp --------------------------------------------SSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred --------------------------------------------CChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 112233456777777777788999999999999999
Q ss_pred HHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CC------hhhHHHHHH
Q psy2764 345 ANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------IL------PILKEIVEM 411 (419)
Q Consensus 345 ~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~------~~~r~~ie~ 411 (419)
+.|...++.....++.+ .++|.++++.|++|+. ++||||+++++|||+|+++ +| .....+++.
T Consensus 284 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~----~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr 359 (412)
T 3fht_A 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKE----KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHR 359 (412)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSC----SEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHH
T ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCC----cEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecc
Confidence 99999998888877666 7899999999999998 8999999999999999654 44 345678888
Q ss_pred HHhcCc
Q psy2764 412 LFQKGL 417 (419)
Q Consensus 412 ~f~~g~ 417 (419)
..|.|+
T Consensus 360 ~GR~gR 365 (412)
T 3fht_A 360 IGRTGR 365 (412)
T ss_dssp HTTSSC
T ss_pred cCcccC
Confidence 877765
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.7e-40 Score=316.00 Aligned_cols=312 Identities=16% Similarity=0.190 Sum_probs=237.2
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHHHHHHHhc---CCC
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HKT 117 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~~i~~~~~---~~~ 117 (419)
...|.+ +++++.+. +.+.++++..| +|+|.++++.+..+ +++++++|||+|||++|++++..... .+.
T Consensus 4 ~~~f~~-~~l~~~l~---~~l~~~~~~~~---~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~ 76 (395)
T 3pey_A 4 AKSFDE-LGLAPELL---KGIYAMKFQKP---SKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP 76 (395)
T ss_dssp CCSSTT-SCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC
T ss_pred ccCHhh-CCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc
Confidence 356777 99999998 88888888765 99999999999887 99999999999999998877765533 567
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccc----cceEeccce---ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc
Q psy2764 118 RTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQ---INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY 190 (419)
Q Consensus 118 ~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~---~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~ 190 (419)
++||++||++|+.|+++.+.++... +....++.. ...+++|+|+||+++...+......+.+++++|+||||+
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 9999999999999999999998754 333444432 223589999999999999888777889999999999998
Q ss_pred cCC-CcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeee
Q psy2764 191 IND-SERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI 268 (419)
Q Consensus 191 l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (419)
+.+ .++...+..+...++.+.|++++|||+++... +...+... ...+...........+...+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------- 224 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN-ANTLELQTNEVNVDAIKQLYMDC----------- 224 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCS-CEEECCCGGGCSCTTEEEEEEEC-----------
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCC-CeEEEccccccccccccEEEEEc-----------
Confidence 876 56778888888888889999999999987643 44433321 11111000111111111111110
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~ 348 (419)
.........+...+.....+++||||++++.|+.+++.|+
T Consensus 225 ----------------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 264 (395)
T 3pey_A 225 ----------------------------------------KNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLK 264 (395)
T ss_dssp ----------------------------------------SSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHH
T ss_pred ----------------------------------------CchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHH
Confidence 0112233455666666667889999999999999999999
Q ss_pred cCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCCh------hhHHHHHHHHhc
Q psy2764 349 SMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILP------ILKEIVEMLFQK 415 (419)
Q Consensus 349 ~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~------~~r~~ie~~f~~ 415 (419)
..++.....++.+ .++|.+++++|++|+. ++||||+++++|||+|++ ++|. ....+++...|.
T Consensus 265 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~----~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 340 (395)
T 3pey_A 265 SEGHEVSILHGDLQTQERDRLIDDFREGRS----KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT 340 (395)
T ss_dssp HTTCCCEEECTTSCHHHHHHHHHHHHTTSC----CEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTS
T ss_pred hcCCcEEEeCCCCCHHHHHHHHHHHHCCCC----CEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcccc
Confidence 9999888877666 7889999999999998 899999999999999965 4454 667888888877
Q ss_pred Cc
Q psy2764 416 GL 417 (419)
Q Consensus 416 g~ 417 (419)
|+
T Consensus 341 gR 342 (395)
T 3pey_A 341 GR 342 (395)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=327.91 Aligned_cols=313 Identities=14% Similarity=0.162 Sum_probs=147.9
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHHHHHHHhc---CC
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HK 116 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~~i~~~~~---~~ 116 (419)
+...|.+ +++++.+. +.|.+++|..| +|+|.++++.++.+ ++++++||||||||++|++++..... .+
T Consensus 90 ~~~~f~~-~~l~~~l~---~~l~~~g~~~p---~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~ 162 (479)
T 3fmp_B 90 SVKSFEE-LRLKPQLL---QGVYAMGFNRP---SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 162 (479)
T ss_dssp CCCCSGG-GTCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCS
T ss_pred CcCCHHH-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCC
Confidence 3456777 99999988 88888888876 99999999999876 99999999999999998877765443 34
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccceec----CCCcEEEEcHHHHHHHHhc-CCCCCCCccEEEEe
Q psy2764 117 TRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQIN----TTASCLVMTTEILRSMLYR-GSDVLRDLEYVIFD 186 (419)
Q Consensus 117 ~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIiD 186 (419)
+++||++||++|+.|+++.+.++... ++...++.... ..++|+|+||+++..++.+ ....+.++++||+|
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 58999999999999999998887542 34455544332 2468999999999988865 34567899999999
Q ss_pred CCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccc
Q psy2764 187 EVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQ 264 (419)
Q Consensus 187 E~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (419)
|||++.+ .++...+..+...++.+.|++++|||+++... ++..+.. .+..+...........+.+.
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~----------- 310 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP-DPNVIKLKREEETLDTIKQY----------- 310 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSS-SEEEEEEC-----------------------
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcC-CCeEEeccccccCcCCceEE-----------
Confidence 9998876 57777888888888889999999999987653 4433222 11111100000000000000
Q ss_pred eeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHH
Q psy2764 265 LFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNA 344 (419)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~ 344 (419)
+..+ .........+...+......++||||+++..|+.++
T Consensus 311 -~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 311 -YVLC---------------------------------------SSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -EEEe---------------------------------------CCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 0000 001122345555555556678999999999999999
Q ss_pred HHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh------------hhHHHHHH
Q psy2764 345 ANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP------------ILKEIVEM 411 (419)
Q Consensus 345 ~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~------------~~r~~ie~ 411 (419)
..|...++.....|+.+ ..+|.++++.|++|+. +|||||+++++|||+|++++.. ....+++.
T Consensus 351 ~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~----~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr 426 (479)
T 3fmp_B 351 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKE----KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHR 426 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCC----cEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHH
Confidence 99999998888877776 7889999999999999 9999999999999999887642 22356666
Q ss_pred HHhcCc
Q psy2764 412 LFQKGL 417 (419)
Q Consensus 412 ~f~~g~ 417 (419)
..|.|+
T Consensus 427 ~GRagR 432 (479)
T 3fmp_B 427 IGRTGR 432 (479)
T ss_dssp ------
T ss_pred hccccc
Confidence 655553
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-39 Score=313.57 Aligned_cols=309 Identities=14% Similarity=0.201 Sum_probs=237.5
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~ 119 (419)
.+.|.+ +++++.+. +.|.++++..| +|+|.++++.+..++++++.+|||+|||++|++++..... .+.++
T Consensus 7 ~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~ 79 (391)
T 1xti_A 7 SSGFRD-FLLKPELL---RAIVDCGFEHP---SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 79 (391)
T ss_dssp --CGGG-GCCCHHHH---HHHHHHSCCSC---CHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCE
T ss_pred CCChhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeE
Confidence 356777 99999988 88888887755 9999999999999999999999999999998777765533 35689
Q ss_pred EEEcccHHHHHHHHHHHHHhcc-----ccceEeccceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEe
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQ-----DVGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~-----~~~~~~g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiD 186 (419)
||++||++|+.|+++.+.++.. .++.+.|+.... ..++|+|+||+++..++......+.+++++|+|
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 9999999999999999999854 256677765422 237999999999999888877788999999999
Q ss_pred CCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecCChHH-HH-HHhcCcCCccEEEEecCCC--CccceEEEEeCCccc
Q psy2764 187 EVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FA-DWVGNTKKTKVYVVSTLKR--PVPLKHFLYVGPVLE 261 (419)
Q Consensus 187 E~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~-~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 261 (419)
|||++.++ ++...+..++...+...|++++|||+++... +. .++.. +..+. ...... ...+...+...
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~---- 232 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD--PMEIF-VDDETKLTLHGLQQYYVKL---- 232 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSS--CEEEE-CCCCCCCCCTTCEEEEEEC----
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCC--CeEEE-ecCccccCcccceEEEEEc----
Confidence 99998774 6777788888888889999999999988754 33 33332 11111 111000 01111111100
Q ss_pred ccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHH
Q psy2764 262 KNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCD 341 (419)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~ 341 (419)
........+.+.+.....+++||||++++.|+
T Consensus 233 ------------------------------------------------~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 233 ------------------------------------------------KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp ------------------------------------------------CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHH
T ss_pred ------------------------------------------------CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHH
Confidence 11223356667777777789999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHh
Q psy2764 342 QNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQ 414 (419)
Q Consensus 342 ~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~ 414 (419)
.+++.|...|+.....++.+ .++|.+++++|++|+. ++||||+++++|+|+|++ ++|.....+++...|
T Consensus 265 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~----~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR 340 (391)
T 1xti_A 265 ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR----RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 340 (391)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCC----SEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCB
T ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCC----cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhccc
Confidence 99999999998877766665 7889999999999998 999999999999999964 456777788888777
Q ss_pred cCc
Q psy2764 415 KGL 417 (419)
Q Consensus 415 ~g~ 417 (419)
.|+
T Consensus 341 ~~R 343 (391)
T 1xti_A 341 AGR 343 (391)
T ss_dssp CSS
T ss_pred ccC
Confidence 665
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.8e-39 Score=313.37 Aligned_cols=308 Identities=16% Similarity=0.187 Sum_probs=239.2
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEE
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTI 120 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~l 120 (419)
..|.+ +++++.+. ++|.++||..| +|+|.++++.+..++++++.+|||+|||++|++++..... .+.++|
T Consensus 21 ~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 93 (400)
T 1s2m_A 21 NTFED-FYLKRELL---MGIFEAGFEKP---SPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQAL 93 (400)
T ss_dssp CCGGG-GCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CChhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEE
Confidence 45777 99999988 88888888765 9999999999999999999999999999998877765543 467899
Q ss_pred EEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 121 YTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
|++||++|+.|+++.+.++... +....|+... ...++|+|+||+++..++......+.+++++|+||||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 9999999999999999998764 4456665432 2568999999999999888877788999999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH--HHHHhcCcCCccEEEEe-cCCCCccceEEEEeCCccccccee
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE--FADWVGNTKKTKVYVVS-TLKRPVPLKHFLYVGPVLEKNQLF 266 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (419)
++.+.++...+..++..++...|++++|||++.... +..++... ..+.. .......+..++.
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------- 238 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP----YEINLMEELTLKGITQYYA----------- 238 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC----EEESCCSSCBCTTEEEEEE-----------
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCC----eEEEeccccccCCceeEEE-----------
Confidence 998888888888898888889999999999986543 23333321 11000 0000011111110
Q ss_pred eeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHH
Q psy2764 267 LIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAAN 346 (419)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~ 346 (419)
.+ ........+..++.....+++||||++++.++.+++.
T Consensus 239 -~~----------------------------------------~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~ 277 (400)
T 1s2m_A 239 -FV----------------------------------------EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKK 277 (400)
T ss_dssp -EC----------------------------------------CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH
T ss_pred -Ee----------------------------------------chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHH
Confidence 00 1122334566666667778899999999999999999
Q ss_pred hhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCcC
Q psy2764 347 LLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 347 L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~i 418 (419)
|...|+.....++.+ .++|.++++.|++|+. ++||+|+++++|+|+|++ +++.....+++...|.|+.
T Consensus 278 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~----~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~ 352 (400)
T 1s2m_A 278 ITDLGYSCYYSHARMKQQERNKVFHEFRQGKV----RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 352 (400)
T ss_dssp HHHHTCCEEEECTTSCHHHHHHHHHHHHTTSS----SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCT
T ss_pred HHhcCCCeEEecCCCCHHHHHHHHHHHhcCCC----cEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCC
Confidence 999888877766665 7889999999999998 899999999999999965 4566777888888777653
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.8e-40 Score=316.58 Aligned_cols=311 Identities=17% Similarity=0.217 Sum_probs=153.4
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~ 119 (419)
...|.+ +++++.+. +.+..+++..| +|+|+++++.+..++++++.+|||+|||++|++++..... .++++
T Consensus 20 ~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~ 92 (394)
T 1fuu_A 20 VYKFDD-MELDENLL---RGVFGYGFEEP---SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 92 (394)
T ss_dssp CCSSGG-GCCCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCE
T ss_pred cCChhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCE
Confidence 356777 89999998 88888877655 9999999999999999999999999999998777765432 56799
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
||++|+++|+.|+++.+.++... +..++|+.... .+++|+|+||+++...+......+.+++++|+||||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 99999999999999999998754 45566665432 258999999999999888877778899999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-H-HHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceee
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-F-ADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (419)
++.+.++...+..++..+++..|++++|||+++... + ..++.. +..+........+..+...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------------ 238 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN--PVRILVKKDELTLEGIKQFYV------------ 238 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCS--CEEEEECC-------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCC--CeEEEecCccccCCCceEEEE------------
Confidence 998888889899999999999999999999987643 3 333332 111111000000000000000
Q ss_pred eccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 268 IREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
. +. ........+.+.+.....+++||||++++.++.+++.|
T Consensus 239 ~---------------~~------------------------~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L 279 (394)
T 1fuu_A 239 N---------------VE------------------------EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKL 279 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred E---------------cC------------------------chhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHH
Confidence 0 00 00111234444444555668999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
...++.....++.+ .++|.++++.|++|+. +++|||+++++|+|+|++++ |.....+++...|.|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~----~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 352 (394)
T 1fuu_A 280 RNDKFTVSAIYSDLPQQERDTIMKEFRSGSS----RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 352 (394)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHcCCeEEEeeCCCCHHHHHHHHHHHHCCCC----cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccC
Confidence 99988887777666 7889999999999988 99999999999999998765 3444456665555543
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-39 Score=307.51 Aligned_cols=305 Identities=17% Similarity=0.227 Sum_probs=235.5
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHHhc--CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQN--HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~ 119 (419)
...|.+ +++++.+. +.|.++++..| +|+|.++++.+..+ +++++.+|||+|||++++.++..... .+.++
T Consensus 5 ~~~f~~-~~l~~~~~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~ 77 (367)
T 1hv8_A 5 YMNFNE-LNLSDNIL---NAIRNKGFEKP---TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEA 77 (367)
T ss_dssp CCCGGG-SSCCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCE
T ss_pred cCchhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcE
Confidence 456777 89999998 88888888765 99999999998877 79999999999999998877766543 47899
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
||++|+++|+.|+++.+.++++. +....|+.... ..++|+|+||+++...+......+.+++++|+||||
T Consensus 78 lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 78 IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998764 44566655422 268999999999999988877778999999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH--HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceee
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE--FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (419)
.+.+.++...+..++..+++..+++++|||+++... ...+++.. .+. .......+...+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~---------- 221 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDY----SFI--KAKINANIEQSYVEV---------- 221 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSE----EEE--ECCSSSSSEEEEEEC----------
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCC----eEE--EecCCCCceEEEEEe----------
Confidence 998888888888998888889999999999987643 33343331 111 111111222211111
Q ss_pred eccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHh
Q psy2764 268 IREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347 (419)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L 347 (419)
......+.+.+.+. ....++||||++++.++.+++.|
T Consensus 222 ------------------------------------------~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 222 ------------------------------------------NENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp ------------------------------------------CGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHH
T ss_pred ------------------------------------------ChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHH
Confidence 01122345555554 45667999999999999999999
Q ss_pred hcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 348 LSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 348 ~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
...|+.....++.+ .++|.++++.|++|+. +++|+|+++++|+|+|+++. +.....+++...|.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~----~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R 331 (367)
T 1hv8_A 259 RDIGFKAGAIHGDLSQSQREKVIRLFKQKKI----RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 331 (367)
T ss_dssp HHTTCCEEEECSSSCHHHHHHHHHHHHTTSS----SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCC
T ss_pred HhcCCCeEEeeCCCCHHHHHHHHHHHHcCCC----eEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccccc
Confidence 99988877766665 7889999999999988 99999999999999987664 5556677776666554
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.5e-40 Score=330.15 Aligned_cols=321 Identities=14% Similarity=0.164 Sum_probs=228.9
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHHhcC----
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQNH---- 115 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~~~~---- 115 (419)
+...|.+...+++.+. +++.++++..| +|+|.++++.++ .+++++++||||+|||++|++++......
T Consensus 69 ~~~~l~~~~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~ 142 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIH---KAITRMEFPGL---TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD 142 (563)
T ss_dssp CHHHHHHTTSSCHHHH---HHHHTTCCSSC---CHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS
T ss_pred CHHHHhhcCCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc
Confidence 3444555345888887 88888887765 999999999998 67899999999999999988887754321
Q ss_pred ---CCeEEEEcccHHHHHHHHHHHHHhccc--------cceEecccee--------cCCCcEEEEcHHHHHHHHhcC-CC
Q psy2764 116 ---KTRTIYTSPIKALSNQKYRDFRETFQD--------VGLVTGDFQI--------NTTASCLVMTTEILRSMLYRG-SD 175 (419)
Q Consensus 116 ---~~~~lii~Pt~~L~~q~~~~~~~~~~~--------~~~~~g~~~~--------~~~~~Iiv~Tp~~l~~~~~~~-~~ 175 (419)
+.++|||+||++|+.|+++.++++... +..+.|+... ..+++|+|+||+++..++.+. ..
T Consensus 143 ~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 222 (563)
T 3i5x_A 143 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 222 (563)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccc
Confidence 358999999999999999999986431 3345555432 236899999999999877664 33
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-------CCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEec-CCC
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-------KEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVST-LKR 246 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-------~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~-~~~ 246 (419)
.+..+++||+||||++.+++++..+..++..++ .++|+++||||+++... ++.++... +..+..... ...
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 301 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNE 301 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSS
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCC-CceEEEeccCCCC
Confidence 578899999999999999999999988887653 37899999999998754 44443331 111111110 001
Q ss_pred CccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-c
Q psy2764 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-S 325 (419)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 325 (419)
+.... ...+....... ... ........+...+.. .
T Consensus 302 ~~~~~---------~~~~~~~~~~~--------~~~---------------------------~~~~~~~~l~~~~~~~~ 337 (563)
T 3i5x_A 302 PEAHE---------RIDQSVVISEK--------FAN---------------------------SIFAAVEHIKKQIKERD 337 (563)
T ss_dssp CSSCT---------TEEEEEEEESS--------TTH---------------------------HHHHHHHHHHHHHHHTT
T ss_pred ccccc---------cCceEEEECch--------hHh---------------------------hHHHHHHHHHHHHhhcC
Confidence 10000 00000000000 000 000112334444433 5
Q ss_pred CCCCEEEEEcchhhHHHHHHHhhcC---CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC-
Q psy2764 326 QNLPVVLFTLSRKRCDQNAANLLSM---DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG- 400 (419)
Q Consensus 326 ~~~~~LIF~~t~~~~~~l~~~L~~~---~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~- 400 (419)
...++||||+|+..|+.+++.|... ++.....|+.+ ..+|.++++.|++|+. +|||||+++++|||+|+++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~----~vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES----GILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS----EEEEECGGGTSSCCCTTCCE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC----CEEEEcchhhcCCCcccCCE
Confidence 5678999999999999999999876 77766666665 7899999999999998 9999999999999999765
Q ss_pred -----CChhhHHHHHHHHhcCc
Q psy2764 401 -----ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 401 -----l~~~~r~~ie~~f~~g~ 417 (419)
+|.....+++...|.|+
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR 435 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTAR 435 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSC
T ss_pred EEEECCCCchhhhhhhcCcccc
Confidence 56777888888888775
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.7e-39 Score=327.55 Aligned_cols=321 Identities=14% Similarity=0.158 Sum_probs=229.4
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHh--cCCcEEEEcCCCCChhHHHHHHHHHHhc-----
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLE--EHNHVFVTAHTSAGKTVIAEYAIALSQN----- 114 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~--~~~~~iv~apTGsGKT~~~~~~i~~~~~----- 114 (419)
+...|.+...+++.+. ++|.++||..| +|+|.++++.++ .+++++++||||+|||++|++++.....
T Consensus 18 ~~~~l~~~~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~ 91 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIH---KAITRMEFPGL---TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD 91 (579)
T ss_dssp CHHHHHHTTSSCHHHH---HHHHTTTCSSC---CHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS
T ss_pred CHHHHhhcCCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc
Confidence 3444444344888888 88888888765 999999999998 7899999999999999998888764432
Q ss_pred --CCCeEEEEcccHHHHHHHHHHHHHhccc--------cceEecccee--------cCCCcEEEEcHHHHHHHHhcC-CC
Q psy2764 115 --HKTRTIYTSPIKALSNQKYRDFRETFQD--------VGLVTGDFQI--------NTTASCLVMTTEILRSMLYRG-SD 175 (419)
Q Consensus 115 --~~~~~lii~Pt~~L~~q~~~~~~~~~~~--------~~~~~g~~~~--------~~~~~Iiv~Tp~~l~~~~~~~-~~ 175 (419)
.+.++|||+||++|+.|+++.+.+++.. +....|+... ..+++|+|+||+++..++... ..
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 2468999999999999999999987531 3345555432 225899999999999877664 34
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-------CCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecC-CC
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-------KEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTL-KR 246 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-------~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~-~~ 246 (419)
.+..+++||+||||+++++++...+..++..++ .++|+++||||+++... ++.++... +..+...... ..
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~-~~~~~~~~~~~~~ 250 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNE 250 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSS
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCC-CceEEEeecCccc
Confidence 678899999999999999999999988887653 36899999999998654 44433331 1111111100 00
Q ss_pred CccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-c
Q psy2764 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-S 325 (419)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~ 325 (419)
+.... ...+....... ... ........+.+.+.. .
T Consensus 251 ~~~~~---------~i~~~~~~~~~--------~~~---------------------------~~~~~~~~l~~~~~~~~ 286 (579)
T 3sqw_A 251 PEAHE---------RIDQSVVISEK--------FAN---------------------------SIFAAVEHIKKQIKERD 286 (579)
T ss_dssp CSSCT---------TEEEEEEEESS--------TTH---------------------------HHHHHHHHHHHHHHHTT
T ss_pred ccccc---------ccceEEEEecc--------hhh---------------------------hHHHHHHHHHHHHhhcC
Confidence 00000 00000000000 000 001122344444443 5
Q ss_pred CCCCEEEEEcchhhHHHHHHHhhcC---CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC-
Q psy2764 326 QNLPVVLFTLSRKRCDQNAANLLSM---DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG- 400 (419)
Q Consensus 326 ~~~~~LIF~~t~~~~~~l~~~L~~~---~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~- 400 (419)
...++||||+|+..|+.+++.|... ++.....|+.+ .++|.+++++|++|+. +|||||+++++|||+|+++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~----~vLVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES----GILVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS----EEEEECGGGTSSCCCTTCCE
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCC----eEEEEcchhhcCCCcccCCE
Confidence 5678999999999999999999876 77766666666 7889999999999998 9999999999999999776
Q ss_pred -----CChhhHHHHHHHHhcCc
Q psy2764 401 -----ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 401 -----l~~~~r~~ie~~f~~g~ 417 (419)
+|.....+++...|.|+
T Consensus 363 VI~~~~p~s~~~y~Qr~GRagR 384 (579)
T 3sqw_A 363 VLQIGVPSELANYIHRIGRTAR 384 (579)
T ss_dssp EEEESCCSSTTHHHHHHTTSSC
T ss_pred EEEcCCCCCHHHhhhhcccccc
Confidence 46677788888887765
No 17
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-38 Score=326.43 Aligned_cols=324 Identities=25% Similarity=0.341 Sum_probs=242.6
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeE
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRT 119 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~ 119 (419)
..+.|.+ +++++.+. +.+.+.|+.. |+++|.++++. +.++++++++||||||||+++.+++... ...+.++
T Consensus 6 ~~~~~~~-l~l~~~~~---~~l~~~g~~~---l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~i 78 (715)
T 2va8_A 6 EWMPIED-LKLPSNVI---EIIKKRGIKK---LNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKA 78 (715)
T ss_dssp CCCBGGG-SSSCHHHH---HHHHTTSCCB---CCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEE
T ss_pred ccCcHHH-cCCCHHHH---HHHHhCCCCC---CCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeE
Confidence 3466778 99999988 6676666654 59999999999 7889999999999999999988777643 3368899
Q ss_pred EEEcccHHHHHHHHHHHHHhcc---ccceEeccceecC----CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQ---DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~---~~~~~~g~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+|++|+++|+.|++++++++.. .++..+|+..... .++|+|+||+++..++......+.++++||+||+|.+.
T Consensus 79 l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 79 IYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp EEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred EEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 9999999999999999964432 3667777665433 68999999999999888877678999999999999998
Q ss_pred CCcchHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeecccc
Q psy2764 193 DSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAE 272 (419)
Q Consensus 193 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (419)
+..++..++.++..++ +.|++++|||+++..++++|++. ..+....+|+++...+..................
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISNYKQIAKWLGA------EPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTTHHHHHHHHTC------EEEECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCCHHHHHHHhCC------CccCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 8789999998888776 79999999999999999999985 2456777888887665433221111011111000
Q ss_pred CcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCC
Q psy2764 273 GEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDF 352 (419)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~ 352 (419)
. .. ..........+.+.+. .++++||||++++.|+.+++.|.+...
T Consensus 232 ~----~~----------------------------~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~ 277 (715)
T 2va8_A 232 T----KK----------------------------VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMN 277 (715)
T ss_dssp E----EE----------------------------EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTT
T ss_pred h----hh----------------------------cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHh
Confidence 0 00 0001222344444443 456799999999999999999986421
Q ss_pred C------------------------------------ChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhh
Q psy2764 353 S------------------------------------TATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIG 395 (419)
Q Consensus 353 ~------------------------------------~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GID 395 (419)
. ...+|+.+ .++|..+++.|++|.. +|+|||+++++|||
T Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~----~vlvaT~~l~~Gid 353 (715)
T 2va8_A 278 FVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI----KVIVATPTLAAGVN 353 (715)
T ss_dssp SSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCS----CEEEECGGGGGSSC
T ss_pred hccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCC----eEEEEChHHhcccC
Confidence 1 22244444 7889999999999998 99999999999999
Q ss_pred hccCCCCh-----------------hhHHHHHHHHhcCc
Q psy2764 396 VHHSGILP-----------------ILKEIVEMLFQKGL 417 (419)
Q Consensus 396 i~~~~l~~-----------------~~r~~ie~~f~~g~ 417 (419)
+|.+.+.. ....+++...|.|+
T Consensus 354 ip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 354 LPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp CCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred CCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 98765432 34567777777665
No 18
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.6e-39 Score=330.14 Aligned_cols=315 Identities=20% Similarity=0.286 Sum_probs=236.8
Q ss_pred cchhccC--CCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 45 EWAEMLD--VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 45 ~~~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.|.+ ++ +++.+. +.+.+.++.. |+++|.++++.+.++++++++||||||||+++.+++......+.+++|+
T Consensus 2 ~f~~-l~~~l~~~~~---~~l~~~g~~~---l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i 74 (702)
T 2p6r_A 2 KVEE-LAESISSYAV---GILKEEGIEE---LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYV 74 (702)
T ss_dssp CSHH-HHHHHHHHHH---HHHHCC---C---CCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred chhh-hhhccCHHHH---HHHHhCCCCC---CCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3555 66 777777 6666666654 5999999999999999999999999999999888877655568899999
Q ss_pred cccHHHHHHHHHHHHHhcc---ccceEeccceecC----CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc
Q psy2764 123 SPIKALSNQKYRDFRETFQ---DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE 195 (419)
Q Consensus 123 ~Pt~~L~~q~~~~~~~~~~---~~~~~~g~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~ 195 (419)
+|+++|+.|+++.++++.. .++..+|+..... .++|+|+||+++..++......++++++||+||+|.+.+++
T Consensus 75 ~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp ESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred eCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 9999999999999965432 3677888765443 68999999999999988877778999999999999998888
Q ss_pred chHHHHHHHHhc---CCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeecccc
Q psy2764 196 RGHVWEEVLILL---PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAE 272 (419)
Q Consensus 196 ~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (419)
++..++.++..+ .++.|++++|||+++..++++|++. ..+....+|+++...+..... ....+..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~~------~~~~~~~ 222 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDA------DYYVSDWRPVPLVEGVLCEGT------LELFDGA 222 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTC------EEEECCCCSSCEEEEEECSSE------EEEEETT
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCC------CcccCCCCCccceEEEeeCCe------eeccCcc
Confidence 888888887766 5689999999999999899999985 245677888888766543221 0000000
Q ss_pred CcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC--
Q psy2764 273 GEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM-- 350 (419)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~-- 350 (419)
.. .. ........+.+.+. .++++||||++++.|+.++..|...
T Consensus 223 ~~-~~--------------------------------~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~ 267 (702)
T 2p6r_A 223 FS-TS--------------------------------RRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITA 267 (702)
T ss_dssp EE-EE--------------------------------EECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred hh-hh--------------------------------hhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 00 00 00002334444443 4567999999999999999988752
Q ss_pred ----------------------------CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 351 ----------------------------DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 351 ----------------------------~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
+.....+|+.+ .++|..+++.|++|.. +|+|||+++++|||+|.+.+
T Consensus 268 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~----~vlvaT~~l~~Gidip~~~~ 343 (702)
T 2p6r_A 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI----KVVVATPTLAAGVNLPARRV 343 (702)
T ss_dssp TTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC----CEEEECSTTTSSSCCCBSEE
T ss_pred hhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC----eEEEECcHHhccCCCCceEE
Confidence 01223344444 7889999999999998 99999999999999997654
Q ss_pred -------------ChhhHHHHHHHHhcCc
Q psy2764 402 -------------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 -------------~~~~r~~ie~~f~~g~ 417 (419)
+.....+++...|.|+
T Consensus 344 VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR 372 (702)
T 2p6r_A 344 IVRSLYRFDGYSKRIKVSEYKQMAGRAGR 372 (702)
T ss_dssp EECCSEEESSSEEECCHHHHHHHHTTBSC
T ss_pred EEcCceeeCCCCCcCCHHHHHHHhhhcCC
Confidence 3335678888877775
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=9.1e-39 Score=330.01 Aligned_cols=313 Identities=21% Similarity=0.297 Sum_probs=239.7
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEE
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYT 122 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii 122 (419)
.|.+ +++++.+. +.+.+.|+.. |+++|.++++. +..+++++++||||||||+++.+++... ...+.+++|+
T Consensus 2 ~f~~-l~l~~~~~---~~l~~~g~~~---l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i 74 (720)
T 2zj8_A 2 RVDE-LRVDERIK---STLKERGIES---FYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYI 74 (720)
T ss_dssp BGGG-CCSCHHHH---HHHHHTTCCB---CCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred cHhh-cCCCHHHH---HHHHHCCCCC---CCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4666 89998888 6676666654 59999999998 7899999999999999999987776643 3357899999
Q ss_pred cccHHHHHHHHHHHHHhcc---ccceEeccceecC----CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc
Q psy2764 123 SPIKALSNQKYRDFRETFQ---DVGLVTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE 195 (419)
Q Consensus 123 ~Pt~~L~~q~~~~~~~~~~---~~~~~~g~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~ 195 (419)
+|+++|+.|++++++++.. .++.++|+..... .++|+|+||+++..++......++++++||+||+|++.+..
T Consensus 75 ~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc
Confidence 9999999999999975432 4777888765443 68999999999999888877778899999999999998888
Q ss_pred chHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcc
Q psy2764 196 RGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 275 (419)
Q Consensus 196 ~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (419)
++..++.++..++.+.|++++|||+++..++++|++. ..+....+|+++...+..... ........
T Consensus 155 r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~rp~~l~~~~~~~~~------~~~~~~~~-- 220 (720)
T 2zj8_A 155 RGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNA------ELIVSDWRPVKLRRGVFYQGF------VTWEDGSI-- 220 (720)
T ss_dssp THHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTTE------EEEECCCCSSEEEEEEEETTE------EEETTSCE--
T ss_pred ccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhCC------cccCCCCCCCcceEEEEeCCe------eeccccch--
Confidence 9999999998887789999999999999999999975 235567788887765543221 00000000
Q ss_pred cchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC-----
Q psy2764 276 LTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM----- 350 (419)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~----- 350 (419)
.........+.+.+. .++++||||++++.|+.++..|.+.
T Consensus 221 ---------------------------------~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~ 265 (720)
T 2zj8_A 221 ---------------------------------DRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLL 265 (720)
T ss_dssp ---------------------------------EECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGS
T ss_pred ---------------------------------hhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhc
Confidence 000111234444443 3467999999999999999998753
Q ss_pred -------------CC---------------CChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 351 -------------DF---------------STATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 351 -------------~~---------------~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
++ ....+|+.+ .++|..+++.|++|.. +|+|||+++++|||+|.+.+
T Consensus 266 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~----~vlvaT~~l~~Gvdip~~~~ 341 (720)
T 2zj8_A 266 TKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGII----KAVVATPTLSAGINTPAFRV 341 (720)
T ss_dssp CHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSS----CEEEECSTTGGGCCCCBSEE
T ss_pred ChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCC----eEEEECcHhhccCCCCceEE
Confidence 11 122344444 7889999999999998 99999999999999986543
Q ss_pred --------------ChhhHHHHHHHHhcCc
Q psy2764 402 --------------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 --------------~~~~r~~ie~~f~~g~ 417 (419)
+.....+++...|.|+
T Consensus 342 VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR 371 (720)
T 2zj8_A 342 IIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371 (720)
T ss_dssp EECCSEECCSSSCEECCHHHHHHHHTTBCC
T ss_pred EEcCCeeecCCCCccCCHHHHHHHHhhcCC
Confidence 3345577787777775
No 20
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.8e-38 Score=345.38 Aligned_cols=340 Identities=26% Similarity=0.374 Sum_probs=237.0
Q ss_pred hhhhhhcccCCCCCCcccccceecccCCCCcccccccchhccCCCcccc-----ccccccccccccCCCCccHHHHHHHH
Q psy2764 9 SLGRVLRGQNSGSNRREVDIPILKISNTLPKHVTQTEWAEMLDVSKPVL-----DFDAKVPIMAHTWPFELDVFQKQAII 83 (419)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~~~~Q~~ai~ 83 (419)
||+|+-+.....+.|..+.+|...+... +.+++.+... ..++++...+|.+ ++|+|.++++
T Consensus 871 sd~w~~~~~~~~~~~~~~~~p~~~~~~t-----------~lldl~plp~s~L~~~~~e~l~~~~f~~---fnpiQ~q~~~ 936 (1724)
T 4f92_B 871 SDRWLSCETQLPVSFRHLILPEKYPPPT-----------ELLDLQPLPVSALRNSAFESLYQDKFPF---FNPIQTQVFN 936 (1724)
T ss_dssp ESSSTTCEEEEEEECTTCCCCCCCCCCC-----------CCCCCCCCBGGGSCCHHHHTTTTTTCSB---CCHHHHHHHH
T ss_pred EccccCCCceeeeccccccCCCCCCCCC-----------ccccCCCCCcccccCHHHHHHHHhcCCC---CCHHHHHHHH
Confidence 4777766666666666665554322111 1122222111 1225555545444 6999999999
Q ss_pred HH-hcCCcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccceec--
Q psy2764 84 KL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQIN-- 153 (419)
Q Consensus 84 ~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~-- 153 (419)
.+ ..++|++++||||||||++|.++|.... .++.++||++|+++||.|+++.|.+.++. ++.++|+...+
T Consensus 937 ~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~ 1016 (1724)
T 4f92_B 937 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK 1016 (1724)
T ss_dssp HHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH
T ss_pred HHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh
Confidence 98 4678999999999999999999987543 45779999999999999999999876543 66788876543
Q ss_pred --CCCcEEEEcHHHHHHHHhcCC--CCCCCccEEEEeCCcccCCCcchHHHHHHHHh-------cCCCCcEEEEeeecCC
Q psy2764 154 --TTASCLVMTTEILRSMLYRGS--DVLRDLEYVIFDEVHYINDSERGHVWEEVLIL-------LPKEVCIVMLSATVPN 222 (419)
Q Consensus 154 --~~~~Iiv~Tp~~l~~~~~~~~--~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~ 222 (419)
.+++|+|||||++..++.+.. ..+++++++|+||+|++.+ .++..++.++.. .++++|++++|||++|
T Consensus 1017 ~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N 1095 (1724)
T 4f92_B 1017 LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN 1095 (1724)
T ss_dssp HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT
T ss_pred hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 458999999999988876533 3578999999999998876 577777766653 3568999999999999
Q ss_pred hHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCC
Q psy2764 223 TLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKL 302 (419)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (419)
..++++|++. ....++++....+|++++.++............ .
T Consensus 1096 ~~dla~WL~~-~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~------------------~----------------- 1139 (1724)
T 4f92_B 1096 AKDVAHWLGC-SATSTFNFHPNVRPVPLELHIQGFNISHTQTRL------------------L----------------- 1139 (1724)
T ss_dssp HHHHHHHHTC-CSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH------------------H-----------------
T ss_pred HHHHHHHhCC-CCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh------------------h-----------------
Confidence 9999999987 456788889999999998876544331111110 0
Q ss_pred CCCCCCCcchhHHHHHHHHH-HHcCCCCEEEEEcchhhHHHHHHHhhcCC----CCChhHHHHHHHHHHHHHHhcCCcCC
Q psy2764 303 NGPFTRGAEKNLFISFLNYL-RKSQNLPVVLFTLSRKRCDQNAANLLSMD----FSTATEKSKIHRFFQDSIRNLQNEDD 377 (419)
Q Consensus 303 ~~~~~~~~~~~~~~~l~~~l-~~~~~~~~LIF~~t~~~~~~l~~~L~~~~----~~~~~~~~~~~~~r~~~l~~f~~g~~ 377 (419)
... ..+...+ ....++++||||+|++.|+.+|..|.... -....... ..+.....++... +
T Consensus 1140 ------~~~----~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~---d 1205 (1724)
T 4f92_B 1140 ------SMA----KPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC-TEKDLIPYLEKLS---D 1205 (1724)
T ss_dssp ------TTH----HHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS-CHHHHHHHHTTCC---C
T ss_pred ------hhc----chHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc-cHHHHHHHHhhcc---c
Confidence 111 1222222 33556789999999999999998885431 00000000 0111222233332 2
Q ss_pred CCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 378 RALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 378 ~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
. ...+++.+||.+||++|+..+|..||++|++|.|+
T Consensus 1206 ----~--~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1206 ----S--TLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ----H--HHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred ----H--HHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 2 24678999999999999999999999999999985
No 21
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-38 Score=316.15 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=195.1
Q ss_pred cCCCccccccccccccccccCCCCccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcc
Q psy2764 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSP 124 (419)
Q Consensus 50 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~P 124 (419)
.++++.+. +.+.+.++..| +++|.+|++.+.++ +++++++|||||||++|++++..... .++++||++|
T Consensus 124 ~~l~~~~~---~~l~~~g~~~p---~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P 197 (508)
T 3fho_A 124 XXXXXXXX---XXXXXXXXXXX---XKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAP 197 (508)
T ss_dssp ------------------CEEC---CCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECS
T ss_pred cccccccc---cccccccccCc---HHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 56666666 77777776654 99999999999887 99999999999999998888776543 3558999999
Q ss_pred cHHHHHHHHHHHHHhccccc----eEeccce---ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-Ccc
Q psy2764 125 IKALSNQKYRDFRETFQDVG----LVTGDFQ---INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-SER 196 (419)
Q Consensus 125 t~~L~~q~~~~~~~~~~~~~----~~~g~~~---~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-~~~ 196 (419)
+++|+.|+++.+.+++...+ ...++.. ....++|+|+||+++...+......+.++++||+||||++.+ .++
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~ 277 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL 277 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--C
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCc
Confidence 99999999999999876522 2222221 223689999999999998888777889999999999998876 568
Q ss_pred hHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcc
Q psy2764 197 GHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 275 (419)
Q Consensus 197 ~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (419)
...+..+...++.+.|++++|||+++..+ +..++.... ..+...........+. ..+...
T Consensus 278 ~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~------------~~~~~~------ 338 (508)
T 3fho_A 278 GDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA-NEIRLKTEELSVEGIK------------QLYMDC------ 338 (508)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTC-EEECCCCCC----CCC------------CEEEEC------
T ss_pred HHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCC-eEEEeccccCCcccce------------EEEEEC------
Confidence 88888899999989999999999988654 444443311 1110000000000000 011000
Q ss_pred cchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCCh
Q psy2764 276 LTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTA 355 (419)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~ 355 (419)
.........+.+.+.....+++||||+++++|+.+++.|.+.++...
T Consensus 339 ---------------------------------~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~ 385 (508)
T 3fho_A 339 ---------------------------------QSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVA 385 (508)
T ss_dssp -----------------------------------CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCC
T ss_pred ---------------------------------CchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEE
Confidence 01122334566666556667899999999999999999999998888
Q ss_pred hHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCC
Q psy2764 356 TEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGIL 402 (419)
Q Consensus 356 ~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~ 402 (419)
..++.+ ..+|.++++.|++|+. +|||+|+++++|||+|++++.
T Consensus 386 ~~hg~~~~~~R~~il~~f~~g~~----~VLVaT~~l~~GiDip~v~~V 429 (508)
T 3fho_A 386 CLTGNLEGAQRDAIMDSFRVGTS----KVLVTTNVIARGIDVSQVNLV 429 (508)
T ss_dssp EEC-----CTTGGGTHHHHSSSC----CCCEECC-----CCCTTCCEE
T ss_pred EEeCCCCHHHHHHHHHHHHCCCC----eEEEeCChhhcCCCccCCCEE
Confidence 877666 6679999999999998 999999999999999988753
No 22
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.8e-38 Score=342.94 Aligned_cols=290 Identities=23% Similarity=0.337 Sum_probs=215.2
Q ss_pred ccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHHh-----------cCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 74 LDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALSQ-----------NHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 74 ~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~~-----------~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
|+++|+++++.+ .+++|++++||||||||++|.+++.... ..+.++||++|+++|+.|+++.|.+.+.
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 799999999987 5789999999999999999999887543 2467899999999999999999998876
Q ss_pred c----cceEeccceecC----CCcEEEEcHHHHHHHHhcCC--CCCCCccEEEEeCCcccCCCcchHHHHHHHHh-----
Q psy2764 142 D----VGLVTGDFQINT----TASCLVMTTEILRSMLYRGS--DVLRDLEYVIFDEVHYINDSERGHVWEEVLIL----- 206 (419)
Q Consensus 142 ~----~~~~~g~~~~~~----~~~Iiv~Tp~~l~~~~~~~~--~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~----- 206 (419)
. ++.++|+.+... .++|+|+|||++..++.+.. ..++++++||+||+|.+.+ .++..++.++.+
T Consensus 160 ~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNI 238 (1724)
T ss_dssp TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHH
Confidence 5 566888876543 48999999999987775543 2478999999999998876 688888876653
Q ss_pred --cCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHH
Q psy2764 207 --LPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284 (419)
Q Consensus 207 --~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (419)
.++.+|++++|||+||..++++|++......++++...+||+|++..++......... .+ .
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~--------------~~-~-- 301 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK--------------RF-Q-- 301 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH--------------HH-H--
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh--------------hh-H--
Confidence 4578999999999999999999999877778888999999999887654322211000 00 0
Q ss_pred HHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHH-HcCCCCEEEEEcchhhHHHHHHHhhcCCC-------CChh
Q psy2764 285 EVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLR-KSQNLPVVLFTLSRKRCDQNAANLLSMDF-------STAT 356 (419)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~LIF~~t~~~~~~l~~~L~~~~~-------~~~~ 356 (419)
.....+.+.+. ...++++||||+||+.|+.+|+.|.+... ....
T Consensus 302 ----------------------------~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~ 353 (1724)
T 4f92_B 302 ----------------------------IMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 353 (1724)
T ss_dssp ----------------------------HHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSC
T ss_pred ----------------------------HHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhccc
Confidence 00112222222 23456899999999999999998865310 0000
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 357 EKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 357 ~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
... . .+.+.... ... ......+++.+||.+||++|+..+|..||++|++|.|+
T Consensus 354 ~~~-~----~~~~~~~~-~~~----~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~ 406 (1724)
T 4f92_B 354 GSA-S----TEVLRTEA-EQC----KNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ 406 (1724)
T ss_dssp CTT-C----SSHHHHTT-SCC----STHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC
T ss_pred chh-H----HHHHHhhh-ccc----ccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 000 0 00111111 111 22446788999999999999999999999999999986
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.2e-37 Score=289.00 Aligned_cols=284 Identities=17% Similarity=0.170 Sum_probs=215.9
Q ss_pred cccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 61 AKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 61 ~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
+.|.++|+..| +|+|.++++.+.+++++++.+|||+|||++++.++... +.++||++|+++|+.|+++.+.++.
T Consensus 7 ~~l~~~g~~~l---~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 7 QAIREMGFKNF---TEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp HHHHHTTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCC---CHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 67777777654 99999999999999999999999999999877665543 7889999999999999999999886
Q ss_pred cc----cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCC
Q psy2764 141 QD----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKE 210 (419)
Q Consensus 141 ~~----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~ 210 (419)
.. ++.++|+.... ..++|+|+||+++.+.+......+.+++++|+||||++.++++...+..++...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR 160 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTC
T ss_pred hhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcc
Confidence 53 55566665422 358999999999999888777778899999999999998888888899999999889
Q ss_pred CcEEEEeeecCChHH--HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHH
Q psy2764 211 VCIVMLSATVPNTLE--FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKC 288 (419)
Q Consensus 211 ~~~l~~SAT~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (419)
.+++++|||+++... +..++... .. .........+...+.....
T Consensus 161 ~~~~~~SAT~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~----------------------------- 206 (337)
T 2z0m_A 161 KITGLFSATIPEEIRKVVKDFITNY----EE-IEACIGLANVEHKFVHVKD----------------------------- 206 (337)
T ss_dssp SEEEEEESCCCHHHHHHHHHHSCSC----EE-EECSGGGGGEEEEEEECSS-----------------------------
T ss_pred cEEEEEeCcCCHHHHHHHHHhcCCc----ee-eecccccCCceEEEEEeCh-----------------------------
Confidence 999999999987653 34444331 01 1111111112211111100
Q ss_pred HhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHH
Q psy2764 289 RKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQD 367 (419)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~ 367 (419)
.. ....+.+.....+++||||+++++++.+++.|... ...++.+ ..+|.+
T Consensus 207 ---------------------~~----~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~r~~ 257 (337)
T 2z0m_A 207 ---------------------DW----RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNA----IELRGDLPQSVRNR 257 (337)
T ss_dssp ---------------------SS----HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTE----EEECTTSCHHHHHH
T ss_pred ---------------------HH----HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhhh----hhhcCCCCHHHHHH
Confidence 00 12224445667788999999999999999999842 2233333 678999
Q ss_pred HHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 368 ~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
++++|++|+. +++|||+++++|+|+|+++ .+.....+++...|.|+
T Consensus 258 ~~~~f~~~~~----~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR 309 (337)
T 2z0m_A 258 NIDAFREGEY----DMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR 309 (337)
T ss_dssp HHHHHHTTSC----SEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCG
T ss_pred HHHHHHcCCC----cEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCcccc
Confidence 9999999998 9999999999999999765 46667788888877765
No 24
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.2e-37 Score=301.75 Aligned_cols=274 Identities=12% Similarity=0.100 Sum_probs=206.4
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc---ccceEe
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLVT 147 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~---~~~~~~ 147 (419)
+|+|+|+|.++++.+..+++++++||||+|||++|+.++......++++||++||++|+.|+++.+.++.. .++.++
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~ 98 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY 98 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECC
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEE
Confidence 55689999999999999999999999999999988877777777889999999999999999999999765 466778
Q ss_pred cccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-----------CcchHH-HHHHH
Q psy2764 148 GDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-----------SERGHV-WEEVL 204 (419)
Q Consensus 148 g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-----------~~~~~~-~~~i~ 204 (419)
|+... ...++|+|+||+++...+.. ..+.+++++|+||||++.+ .++... +..++
T Consensus 99 g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~ 176 (414)
T 3oiy_A 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAF 176 (414)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHH
Confidence 87654 12389999999999877654 4567899999999997643 455555 77777
Q ss_pred HhcC-----------CCCcEEEEeee-cCChH--HHH-HHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeec
Q psy2764 205 ILLP-----------KEVCIVMLSAT-VPNTL--EFA-DWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIR 269 (419)
Q Consensus 205 ~~~~-----------~~~~~l~~SAT-~~~~~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (419)
..++ .+.|++++||| .|... .+. .++..... ........+.+.+...
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~------------ 238 (414)
T 3oiy_A 177 STIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG------RLVSVARNITHVRISS------------ 238 (414)
T ss_dssp HHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS------CCCCCCCSEEEEEESS------------
T ss_pred HhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC------ccccccccchheeecc------------
Confidence 7765 78999999999 55443 222 23221100 0001111111111100
Q ss_pred cccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhc
Q psy2764 270 EAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS 349 (419)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~ 349 (419)
.....+.+++.. .+.++||||+++..|+.+++.|..
T Consensus 239 -------------------------------------------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~ 274 (414)
T 3oiy_A 239 -------------------------------------------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKR 274 (414)
T ss_dssp -------------------------------------------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHH
T ss_pred -------------------------------------------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHH
Confidence 012344555544 336799999999999999999999
Q ss_pred CCCCCh-hHHHHHHHHHHHHHHhcCCcCCCCchhhHHH----HHHHhhhhhhcc-C------CCC--hhhHHHHHHHHhc
Q psy2764 350 MDFSTA-TEKSKIHRFFQDSIRNLQNEDDRALPQVKRL----EQLLKNGIGVHH-S------GIL--PILKEIVEMLFQK 415 (419)
Q Consensus 350 ~~~~~~-~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~----t~~l~~GIDi~~-~------~l~--~~~r~~ie~~f~~ 415 (419)
.|+.+. ..++. .| + +++|++|+. ++||| |+++++|||+|+ + ++| .....+++...|.
T Consensus 275 ~~~~~~~~~h~~---~r-~-~~~f~~g~~----~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~ 345 (414)
T 3oiy_A 275 FKFNVGETWSEF---EK-N-FEDFKVGKI----NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRS 345 (414)
T ss_dssp TTCCEEESSSCH---HH-H-HHHHHTTSC----SEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGG
T ss_pred cCCceehhhcCc---ch-H-HHHHhCCCC----eEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCcc
Confidence 999886 66653 33 3 999999999 99999 999999999998 5 456 6788999998887
Q ss_pred Cc
Q psy2764 416 GL 417 (419)
Q Consensus 416 g~ 417 (419)
|+
T Consensus 346 gR 347 (414)
T 3oiy_A 346 SR 347 (414)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 25
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.1e-37 Score=310.11 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=226.2
Q ss_pred ccchh-ccCCCcccccccccccc-ccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEE
Q psy2764 44 TEWAE-MLDVSKPVLDFDAKVPI-MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 121 (419)
Q Consensus 44 ~~~~~-~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~li 121 (419)
..|.. .+++++.+. +.|.+ +||.. |+|+|.++++.++.|+++++++|||+|||++|++++.. ...++||
T Consensus 19 ~~w~~~~~~l~~~l~---~~L~~~fg~~~---~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lV 89 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVK---DILQNVFKLEK---FRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLV 89 (591)
T ss_dssp GGGCCSCSTTHHHHH---HHHHHTSCCCS---CCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEE
T ss_pred hccccccCCCCHHHH---HHHHHHhCCCC---CCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEE
Confidence 44443 477777777 66665 45554 59999999999999999999999999999987666543 3568999
Q ss_pred EcccHHHHHHHHHHHHHhccccceEecccee-------------cCCCcEEEEcHHHHHH---HHh--cCCCCCCCccEE
Q psy2764 122 TSPIKALSNQKYRDFRETFQDVGLVTGDFQI-------------NTTASCLVMTTEILRS---MLY--RGSDVLRDLEYV 183 (419)
Q Consensus 122 i~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-------------~~~~~Iiv~Tp~~l~~---~~~--~~~~~l~~~~~l 183 (419)
|+|+++|+.|+.+.+.++...+..++|+... ....+|+|+||+++.. ++. .....+.+++++
T Consensus 90 isP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 90 ICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp ECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred EeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 9999999999999999986667777776532 3468999999998742 111 122346789999
Q ss_pred EEeCCcccCCCc--chHHHHH--HHHhcCCCCcEEEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeC
Q psy2764 184 IFDEVHYINDSE--RGHVWEE--VLILLPKEVCIVMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG 257 (419)
Q Consensus 184 IiDE~h~l~~~~--~~~~~~~--i~~~~~~~~~~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (419)
||||||++.+++ +++.+.. .+....++.+++++|||+++.. ++..++..... ..+........+...+...
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~---~~~~~~~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKC---FTFTASFNRPNLYYEVRQK 246 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSC---EEEECCCCCTTEEEEEEEC
T ss_pred EEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCc---EEEecCCCCcccEEEEEeC
Confidence 999999998876 6665543 2333345799999999998764 46667765321 1122222221221111100
Q ss_pred CcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-cCCCCEEEEEcc
Q psy2764 258 PVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-SQNLPVVLFTLS 336 (419)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~LIF~~t 336 (419)
..........+.+.+.. ..+.++||||+|
T Consensus 247 --------------------------------------------------~~~~~~~~~~l~~~l~~~~~~~~~IVf~~s 276 (591)
T 2v1x_A 247 --------------------------------------------------PSNTEDFIEDIVKLINGRYKGQSGIIYCFS 276 (591)
T ss_dssp --------------------------------------------------CSSHHHHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred --------------------------------------------------CCcHHHHHHHHHHHHHHhccCCCeEEEeCc
Confidence 01112234566666643 356789999999
Q ss_pred hhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHH
Q psy2764 337 RKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIV 409 (419)
Q Consensus 337 ~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~i 409 (419)
++.|+.+++.|...|+.+...|+.+ .++|.+++++|++|+. +|+|||+++++|||+|++ ++|.....++
T Consensus 277 r~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~----~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~ 352 (591)
T 2v1x_A 277 QKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEI----QVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 352 (591)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSS----SEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCC----eEEEEechhhcCCCcccccEEEEeCCCCCHHHHH
Confidence 9999999999999999888877666 7899999999999998 999999999999999865 5688888999
Q ss_pred HHHHhcCc
Q psy2764 410 EMLFQKGL 417 (419)
Q Consensus 410 e~~f~~g~ 417 (419)
++..+.|+
T Consensus 353 Qr~GRaGR 360 (591)
T 2v1x_A 353 QESGRAGR 360 (591)
T ss_dssp HHHTTSCT
T ss_pred HHhccCCc
Confidence 99888775
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.6e-37 Score=304.65 Aligned_cols=297 Identities=15% Similarity=0.154 Sum_probs=222.4
Q ss_pred cCCCcccccccccccc-ccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 50 LDVSKPVLDFDAKVPI-MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 50 ~~l~~~~~~~~~~l~~-~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
+++++.+. +.|.+ +|+.. |+|+|.++++.++.|+++++++|||+|||++|.+++... ..++|||+|+++|
T Consensus 7 l~L~~~~~---~~l~~~~g~~~---~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL 77 (523)
T 1oyw_A 7 LNLESGAK---QVLQETFGYQQ---FRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISL 77 (523)
T ss_dssp SSHHHHHH---HHHHHTTCCSS---CCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHH
T ss_pred CCCCHHHH---HHHHHHhCCCC---CCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHH
Confidence 77777666 66665 55553 599999999999999999999999999999877665432 4689999999999
Q ss_pred HHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCc--
Q psy2764 129 SNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSE-- 195 (419)
Q Consensus 129 ~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~-- 195 (419)
+.|+.+.+.++...+..++|+... ....+|+++||+++............+++++||||||++.+++
T Consensus 78 ~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~ 157 (523)
T 1oyw_A 78 MKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHD 157 (523)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSC
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCc
Confidence 999999999987667777776432 2348999999999853211111234688999999999998876
Q ss_pred chHHHHHH---HHhcCCCCcEEEEeeecCChH--HHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeecc
Q psy2764 196 RGHVWEEV---LILLPKEVCIVMLSATVPNTL--EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIRE 270 (419)
Q Consensus 196 ~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (419)
+++.+..+ .... ++.+++++|||+++.. ++.++++...+. .......++ .+...+..
T Consensus 158 fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~--~~~~~~~r~-~l~~~v~~-------------- 219 (523)
T 1oyw_A 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL--IQISSFDRP-NIRYMLME-------------- 219 (523)
T ss_dssp CCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCE--EEECCCCCT-TEEEEEEE--------------
T ss_pred cHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCe--EEeCCCCCC-ceEEEEEe--------------
Confidence 56655543 3334 4689999999998764 467777653221 111112221 11111100
Q ss_pred ccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC
Q psy2764 271 AEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM 350 (419)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~ 350 (419)
.......+.+.+....+.++||||+|++.|+.+++.|...
T Consensus 220 ----------------------------------------~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~ 259 (523)
T 1oyw_A 220 ----------------------------------------KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK 259 (523)
T ss_dssp ----------------------------------------CSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred ----------------------------------------CCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC
Confidence 0112345667776667778999999999999999999999
Q ss_pred CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC------CCChhhHHHHHHHHhcCc
Q psy2764 351 DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS------GILPILKEIVEMLFQKGL 417 (419)
Q Consensus 351 ~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~------~l~~~~r~~ie~~f~~g~ 417 (419)
|+.+...|+.+ .++|.+++++|++|+. +|+|||+++++|||+|++ ++|.....++++..|.|+
T Consensus 260 g~~~~~~h~~l~~~~R~~~~~~f~~g~~----~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR 329 (523)
T 1oyw_A 260 GISAAAYHAGLENNVRADVQEKFQRDDL----QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (523)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSC----SEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCT
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCC----eEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccC
Confidence 99887777666 7899999999999998 999999999999999976 467888889998888775
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-34 Score=290.01 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=118.2
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhccc--
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQD-- 142 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-----~~~~lii~Pt~~L~~q~~~~~~~~~~~-- 142 (419)
.+++|+|+|.++++.++.++++++.+|||+|||++|++++...... +.++||++||++|+.|+++.+.+++..
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3467899999999999999999999999999999988887755433 789999999999999999999998653
Q ss_pred --cceEeccceecC-------CCcEEEEcHHHHHHHHhcCCC-CCCCccEEEEeCCcccCCCcchHH-HHHHHHh-c---
Q psy2764 143 --VGLVTGDFQINT-------TASCLVMTTEILRSMLYRGSD-VLRDLEYVIFDEVHYINDSERGHV-WEEVLIL-L--- 207 (419)
Q Consensus 143 --~~~~~g~~~~~~-------~~~Iiv~Tp~~l~~~~~~~~~-~l~~~~~lIiDE~h~l~~~~~~~~-~~~i~~~-~--- 207 (419)
++.++|+..... +++|+|+||+++...+..+.. .+.++++||+||||++.+++.... +..++.. +
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 566777764332 489999999999999888766 789999999999999987653222 2222221 1
Q ss_pred CCCCcEEEEeeecCC
Q psy2764 208 PKEVCIVMLSATVPN 222 (419)
Q Consensus 208 ~~~~~~l~~SAT~~~ 222 (419)
.+.++++++|||++.
T Consensus 164 ~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 164 SQLPQILGLTASVGV 178 (556)
T ss_dssp --CCEEEEEESCCCC
T ss_pred CCCCeEEEEeCCccc
Confidence 356899999999964
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5e-35 Score=310.55 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=195.7
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc---ccceE
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ---DVGLV 146 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~---~~~~~ 146 (419)
++|+|+|+|.+|++.++.|+|++++||||||||++++.++......+.++||++||++|+.|+++.+.++.. .++.+
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l 154 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 154 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 466789999999999999999999999999999988777777778899999999999999999999999652 36778
Q ss_pred eccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCC-----------CcchHH-HHHH
Q psy2764 147 TGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIND-----------SERGHV-WEEV 203 (419)
Q Consensus 147 ~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~-----------~~~~~~-~~~i 203 (419)
+|+.+.. ..++|+|+||++|.+++.. ..+.++++||+||||++.. .++... +..+
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 8877541 2389999999999877654 4567899999999987664 566666 7788
Q ss_pred HHhcC-----------CCCcEEEEeee-cCChHH--H-HHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeee
Q psy2764 204 LILLP-----------KEVCIVMLSAT-VPNTLE--F-ADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI 268 (419)
Q Consensus 204 ~~~~~-----------~~~~~l~~SAT-~~~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (419)
+..++ .+.|+++|||| .|.... + ..++... +......+..+.+.+...
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~------v~~~~~~~~~i~~~~~~~----------- 295 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT------VGRLVSVARNITHVRISS----------- 295 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCC------CCBCCCCCCCEEEEEESC-----------
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEE------eccCCCCcCCceeEEEec-----------
Confidence 88776 78999999999 454432 2 2222210 000111111122221110
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~ 348 (419)
.....+.+++... ++++||||++++.|+.++..|.
T Consensus 296 --------------------------------------------~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~ 330 (1104)
T 4ddu_A 296 --------------------------------------------RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLK 330 (1104)
T ss_dssp --------------------------------------------CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHH
T ss_pred --------------------------------------------CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHH
Confidence 0113445555443 3679999999999999999999
Q ss_pred cCCCCCh-hHHHHHHHHHHHHHHhcCCcCCCCchhhHHH----HHHHhhhhhhcc-CCC
Q psy2764 349 SMDFSTA-TEKSKIHRFFQDSIRNLQNEDDRALPQVKRL----EQLLKNGIGVHH-SGI 401 (419)
Q Consensus 349 ~~~~~~~-~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~----t~~l~~GIDi~~-~~l 401 (419)
..|+.+. ..|+. |.+ +++|++|+. ++||| |+++++|||+|+ +++
T Consensus 331 ~~g~~~~~~lhg~----rr~-l~~F~~G~~----~VLVatas~TdvlarGIDip~~V~~ 380 (1104)
T 4ddu_A 331 RFKFNVGETWSEF----EKN-FEDFKVGKI----NILIGVQAYYGKLTRGVDLPERIKY 380 (1104)
T ss_dssp HTTCCEEESSSSH----HHH-HHHHHHTSC----SEEEEETTTHHHHCCSCCCTTTCCE
T ss_pred hCCCCeeeEecCc----HHH-HHHHHCCCC----CEEEEecCCCCeeEecCcCCCCCCE
Confidence 9999887 66652 556 999999999 99999 999999999999 654
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.6e-34 Score=286.40 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=124.6
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhccc---
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQD--- 142 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-----~~~~lii~Pt~~L~~q~~~~~~~~~~~--- 142 (419)
||+|+|+|.++++.++.++++++++|||+|||++|++++...... +.++||++||++|+.|+++.+.+++..
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 577999999999999999999999999999999988887755433 789999999999999999999998653
Q ss_pred -cceEeccceecC-------CCcEEEEcHHHHHHHHhcCCC-CCCCccEEEEeCCcccCCCc-chHHHHHHHHhc-----
Q psy2764 143 -VGLVTGDFQINT-------TASCLVMTTEILRSMLYRGSD-VLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL----- 207 (419)
Q Consensus 143 -~~~~~g~~~~~~-------~~~Iiv~Tp~~l~~~~~~~~~-~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~----- 207 (419)
++.++|+..... +++|+|+||+++...+..... .+.+++++|+||||++.+.+ +...+...+...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 667888775543 389999999999998887766 68899999999999997654 233332333322
Q ss_pred CCCCcEEEEeeecCCh
Q psy2764 208 PKEVCIVMLSATVPNT 223 (419)
Q Consensus 208 ~~~~~~l~~SAT~~~~ 223 (419)
...+|++++|||+++.
T Consensus 162 ~~~~~~l~lSAT~~~~ 177 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVG 177 (555)
T ss_dssp SCCCEEEEEESCCCCT
T ss_pred CCCCeEEEEecCcccC
Confidence 2468999999999764
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-33 Score=288.10 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=122.7
Q ss_pred cccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc-C----CCeEEEEcccHHHHHHHHHH
Q psy2764 61 AKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-H----KTRTIYTSPIKALSNQKYRD 135 (419)
Q Consensus 61 ~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~----~~~~lii~Pt~~L~~q~~~~ 135 (419)
+++..+|+.. |+++|.++++.++.|+++++++|||+|||++|++++..... . +.++||++||++|+.|+.+.
T Consensus 4 ~~l~~~g~~~---lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFK---PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--C---CCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCC---ccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHH
Confidence 5566777665 59999999999999999999999999999998888764432 2 27899999999999999999
Q ss_pred HHHhccc----cceEeccceec-------CCCcEEEEcHHHHHHHHhcCCC-CCCCccEEEEeCCcccCCCc-chHHHHH
Q psy2764 136 FRETFQD----VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRGSD-VLRDLEYVIFDEVHYINDSE-RGHVWEE 202 (419)
Q Consensus 136 ~~~~~~~----~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~-~l~~~~~lIiDE~h~l~~~~-~~~~~~~ 202 (419)
+++++.. ++.++|+.... ..++|+|+||++|...+..+.. .+.++++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 9999753 56677876432 3589999999999998887765 68899999999999987543 2222222
Q ss_pred HHHh-----cCCCCcEEEEeeecCC
Q psy2764 203 VLIL-----LPKEVCIVMLSATVPN 222 (419)
Q Consensus 203 i~~~-----~~~~~~~l~~SAT~~~ 222 (419)
.+.. ..+.+++++||||+..
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~ 185 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGV 185 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCC
T ss_pred HHHHhhcccCCCCCeEEEEeCcccc
Confidence 3322 2357999999999973
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=270.84 Aligned_cols=340 Identities=16% Similarity=0.166 Sum_probs=211.9
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcc----ccceE
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGLV 146 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~----~~~~~ 146 (419)
++|+|+|.++++.+..+ ++++.+|||+|||++++.++.... ..+.++||++|+++|+.|+.+.+.++++ .++.+
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~ 86 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVAL 86 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEE
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEe
Confidence 45899999999999888 999999999999999877766443 4688999999999999999999999974 36677
Q ss_pred eccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 147 TGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 147 ~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
+|+.... ..++|+|+||+++...+......+.++++||+||||++.+......+...+....+..+++++|||+
T Consensus 87 ~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp 166 (494)
T 1wp9_A 87 TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP 166 (494)
T ss_dssp CSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCS
T ss_pred eCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCC
Confidence 7776432 2589999999999998887777788999999999999876543333444444455689999999999
Q ss_pred CChH-HHHHHhcCcCCccEEEEecCCC-------CccceEEEEeCCcccccceeeecc-----------------cc-Cc
Q psy2764 221 PNTL-EFADWVGNTKKTKVYVVSTLKR-------PVPLKHFLYVGPVLEKNQLFLIRE-----------------AE-GE 274 (419)
Q Consensus 221 ~~~~-~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~ 274 (419)
.+.. ++.+.+................ +..........+. ........+. .. ..
T Consensus 167 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (494)
T 1wp9_A 167 GSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPE-IYKEVRKLLREMLRDALKPLAETGLLESSSPD 245 (494)
T ss_dssp CSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTT
T ss_pred CCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 8543 3333332211111111111110 0000010000000 0000000000 00 00
Q ss_pred ccchhhhHHHHHHHHhhhhcCCCC-----------------------------------------CCCC-C-----CC--
Q psy2764 275 FLTRGYLAAKEVKCRKQLEKGGSG-----------------------------------------GGKL-N-----GP-- 305 (419)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~-~-----~~-- 305 (419)
........................ +... . .+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (494)
T 1wp9_A 246 IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325 (494)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHH
T ss_pred cchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHH
Confidence 000000000000000000000000 0000 0 00
Q ss_pred ----------CCCCcchhHHHHHHHHHHH----cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHH--------HH-H
Q psy2764 306 ----------FTRGAEKNLFISFLNYLRK----SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS--------KI-H 362 (419)
Q Consensus 306 ----------~~~~~~~~~~~~l~~~l~~----~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~--------~~-~ 362 (419)
........+...+.+++.. ..+.++||||+++..++.+++.|...|+.....++ .+ .
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 405 (494)
T 1wp9_A 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 405 (494)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------C
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCH
Confidence 0000122345556666654 56788999999999999999999998887666544 44 6
Q ss_pred HHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 363 RFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 363 ~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
++|.+++++|++|+. ++||+|+++++|||+|+++. +.....+++...|-|+
T Consensus 406 ~~r~~~~~~F~~~~~----~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R 462 (494)
T 1wp9_A 406 REQKLILDEFARGEF----NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462 (494)
T ss_dssp CHHHHHHHHHHHTSC----SEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHhcCCc----eEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccC
Confidence 789999999999988 89999999999999998775 4555566666665554
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-32 Score=286.97 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=119.9
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhccc----
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQD---- 142 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-----~~~~lii~Pt~~L~~q~~~~~~~~~~~---- 142 (419)
++|+|+|.++++.++.++++++++|||+|||++|++++...... +.++|||+||++|+.|+++.+++++..
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 34799999999999999999999999999999988887755433 789999999999999999999998753
Q ss_pred cceEeccceec-------CCCcEEEEcHHHHHHHHhcCCC-CCCCccEEEEeCCcccCCCcc-hHHHHHHHHhc----CC
Q psy2764 143 VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRGSD-VLRDLEYVIFDEVHYINDSER-GHVWEEVLILL----PK 209 (419)
Q Consensus 143 ~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~-~l~~~~~lIiDE~h~l~~~~~-~~~~~~i~~~~----~~ 209 (419)
++.++|+.... .+++|+|+||+++...+..... .+.++++|||||||++.+.+. ...+..++... .+
T Consensus 327 v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~ 406 (797)
T 4a2q_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQ 406 (797)
T ss_dssp EEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCC
Confidence 66788877543 3589999999999998887666 688999999999999876542 22222332221 45
Q ss_pred CCcEEEEeeecCC
Q psy2764 210 EVCIVMLSATVPN 222 (419)
Q Consensus 210 ~~~~l~~SAT~~~ 222 (419)
.++++++|||++.
T Consensus 407 ~~~~l~lSATp~~ 419 (797)
T 4a2q_A 407 LPQILGLTASVGV 419 (797)
T ss_dssp CCEEEEEESCCCC
T ss_pred CCeEEEEcCCccc
Confidence 6899999999964
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=290.35 Aligned_cols=330 Identities=15% Similarity=0.174 Sum_probs=200.8
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEcccHHHHHHH-HHHHHHhcc--
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPIKALSNQK-YRDFRETFQ-- 141 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~Pt~~L~~q~-~~~~~~~~~-- 141 (419)
+++|+++|.++++.++.|+++++.+|||+|||++|++++..... .+.++|||+|+++|+.|+ .+.++++++
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 46789999999999999999999999999999998888765432 237899999999999999 999999986
Q ss_pred -ccceEeccceec-------CCCcEEEEcHHHHHHHHh------cCCCCCCCccEEEEeCCcccCCCc-chHHHHHHHHh
Q psy2764 142 -DVGLVTGDFQIN-------TTASCLVMTTEILRSMLY------RGSDVLRDLEYVIFDEVHYINDSE-RGHVWEEVLIL 206 (419)
Q Consensus 142 -~~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~------~~~~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~ 206 (419)
.++.++|+.... ...+|+|+||++|...+. .....+.++++|||||||++.... +...+..++..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 477788876544 358999999999998773 344567889999999999875433 44444433322
Q ss_pred c-------------CCCCcEEEEeeecCCh--------H----HHHHHhcCcCCccEEEEec------CCCCccceEEEE
Q psy2764 207 L-------------PKEVCIVMLSATVPNT--------L----EFADWVGNTKKTKVYVVST------LKRPVPLKHFLY 255 (419)
Q Consensus 207 ~-------------~~~~~~l~~SAT~~~~--------~----~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~ 255 (419)
. .+.++++++|||+++. . ++...+... .+..... ...+.+...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~---~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF---TIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS---CCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred hhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC---EEEeecCchHHHhhhcCCCceEEEE
Confidence 1 1568999999999873 1 122333320 0000000 000111112211
Q ss_pred eCCccc-c-----------cceeeeccccCcccch---------------------------------------------
Q psy2764 256 VGPVLE-K-----------NQLFLIREAEGEFLTR--------------------------------------------- 278 (419)
Q Consensus 256 ~~~~~~-~-----------~~~~~~~~~~~~~~~~--------------------------------------------- 278 (419)
...... . ......+++...+...
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 0 0000000000000000
Q ss_pred ------hhhHHHHHHH--------------------------------HhhhhcCCCCCCCCCCCCCCCcchhHHHHHHH
Q psy2764 279 ------GYLAAKEVKC--------------------------------RKQLEKGGSGGGKLNGPFTRGAEKNLFISFLN 320 (419)
Q Consensus 279 ------~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (419)
.+........ ..... .............+.+.+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---------~~~~~~~k~~~L~~~L~~ 392 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE---------NPEYENEKLTKLRNTIME 392 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT---------CCC----CSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh---------cCCCCCHHHHHHHHHHHH
Confidence 0000000000 00000 000011112233445555
Q ss_pred HHHHcC-CCCEEEEEcchhhHHHHHHHhhcC------CCCChhHHHH--------H-HHHHHHHHHhcCCcCCCCchhhH
Q psy2764 321 YLRKSQ-NLPVVLFTLSRKRCDQNAANLLSM------DFSTATEKSK--------I-HRFFQDSIRNLQNEDDRALPQVK 384 (419)
Q Consensus 321 ~l~~~~-~~~~LIF~~t~~~~~~l~~~L~~~------~~~~~~~~~~--------~-~~~r~~~l~~f~~g~~~~~~~vl 384 (419)
.+.... ..++||||++++.++.+++.|... |+.....++. + ..+|.+++++|++|+. +||
T Consensus 393 ~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~----~VL 468 (699)
T 4gl2_A 393 QYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKI----NLL 468 (699)
T ss_dssp HHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-------CCS
T ss_pred HHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCC----cEE
Confidence 555545 678999999999999999999987 7777765554 4 7899999999999998 999
Q ss_pred HHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcC
Q psy2764 385 RLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKG 416 (419)
Q Consensus 385 v~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g 416 (419)
|||+++++|||+|++++ |.....+++...|-|
T Consensus 469 VaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRAr 506 (699)
T 4gl2_A 469 IATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRAR 506 (699)
T ss_dssp EEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSC
T ss_pred EEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCC
Confidence 99999999999998875 666777777776643
No 34
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-32 Score=246.09 Aligned_cols=200 Identities=19% Similarity=0.218 Sum_probs=163.7
Q ss_pred Cccc-ccceecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCCh
Q psy2764 23 RREV-DIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGK 101 (419)
Q Consensus 23 ~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGK 101 (419)
|+++ ++++..+++..|...+...|.+ +++++.+. +.|.++++..| +++|.++++.+.+++++++++|||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~-l~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~i~~~~~~l~~a~TGsGK 73 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDE-LKLDPTIR---NNILLASYQRP---TPIQKNAIPAILEHRDIMACAQTGSGK 73 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGG-GSCCCSTT---TTTTTTTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSSH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhh-CCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChH
Confidence 4455 6777777777776556677888 99999998 88888888765 999999999999999999999999999
Q ss_pred hHHHHHHHHHHhc------------CCCeEEEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcE
Q psy2764 102 TVIAEYAIALSQN------------HKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASC 158 (419)
Q Consensus 102 T~~~~~~i~~~~~------------~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~I 158 (419)
|++|++++..... .++++||++||++|+.|+++.+.++... +..+.|+... ..+++|
T Consensus 74 T~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I 153 (253)
T 1wrb_A 74 TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHL 153 (253)
T ss_dssp HHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSE
T ss_pred HHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCE
Confidence 9998888764421 2468999999999999999999998654 4456666542 245899
Q ss_pred EEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc--CC--CCcEEEEeeecCChHH-HHHH
Q psy2764 159 LVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL--PK--EVCIVMLSATVPNTLE-FADW 229 (419)
Q Consensus 159 iv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~--~~--~~~~l~~SAT~~~~~~-~~~~ 229 (419)
+|+||+++..++......+.+++++|+||||++.+.+++..+..++..+ +. +.|++++|||+++..+ +++.
T Consensus 154 vv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 154 LVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHH
T ss_pred EEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHH
Confidence 9999999999998887788999999999999998888999999998853 33 7899999999987654 4443
No 35
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=241.07 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=152.1
Q ss_pred cccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------
Q psy2764 41 VTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------- 113 (419)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~------- 113 (419)
.+...|.+.+++++.+. +++.++|+..| +++|.++++.+.+|++++++||||+|||++|++++....
T Consensus 16 ~p~~~f~~~~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLL---KSIIRVGILKP---TPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp CCCCSHHHHHTTCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred CChhhHhhhhccCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 35677888789999888 88888888765 999999999999999999999999999999888766432
Q ss_pred --cCCCeEEEEcccHHHHHHHHHHHHHhccc---cceEeccceec-------CCCcEEEEcHHHHHHHHhcCCCCCCCcc
Q psy2764 114 --NHKTRTIYTSPIKALSNQKYRDFRETFQD---VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRGSDVLRDLE 181 (419)
Q Consensus 114 --~~~~~~lii~Pt~~L~~q~~~~~~~~~~~---~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~ 181 (419)
..++++||++||++|+.|+++.+.++... +..++|+.... .+++|+|+||+++..++......+.+++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 26788999999999999999999998532 45566655433 3579999999999998888888899999
Q ss_pred EEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH
Q psy2764 182 YVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 182 ~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 225 (419)
++|+||||++.+.++...+..++..++++.|++++|||+++...
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 213 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVR 213 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHH
Confidence 99999999999889999999999999999999999999987754
No 36
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.98 E-value=2e-32 Score=245.35 Aligned_cols=191 Identities=18% Similarity=0.157 Sum_probs=159.7
Q ss_pred eecccCCCCcccccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 30 ILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
+...+.+.|. +...|.+ +++++.+. +.+.+.|+..| +++|.++++.+..|++++++||||+|||++|++++
T Consensus 17 i~~~~~~~p~--~~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~ 87 (242)
T 3fe2_A 17 ITVRGHNCPK--PVLNFYE-ANFPANVM---DVIARQNFTEP---TAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA 87 (242)
T ss_dssp EEEESSCCCC--CCSSTTT-TTCCHHHH---HHHHTTTCCSC---CHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHH
T ss_pred eEEeCCCCCC--ccCCHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHH
Confidence 3344555444 5677877 99999988 88888888765 99999999999999999999999999999988876
Q ss_pred HHHh--------cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccceec-------CCCcEEEEcHHHHHHHH
Q psy2764 110 ALSQ--------NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN-------TTASCLVMTTEILRSML 170 (419)
Q Consensus 110 ~~~~--------~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~ 170 (419)
.... ..++++||++||++|+.|+++.++++... +..++|+.... .+++|+|+||+++.+++
T Consensus 88 l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 167 (242)
T 3fe2_A 88 IVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 167 (242)
T ss_dssp HHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred HHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 6432 24788999999999999999999987653 45566665432 35899999999999999
Q ss_pred hcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHH
Q psy2764 171 YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADW 229 (419)
Q Consensus 171 ~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~ 229 (419)
..+...+.+++++|+||||++.+++++..+..++..++++.|+++||||+++... +++.
T Consensus 168 ~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 168 ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp HHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred HcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHH
Confidence 8888889999999999999999989999999999999999999999999987764 4443
No 37
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=7.8e-32 Score=283.95 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=119.1
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-----CCeEEEEcccHHHHHHHHHHHHHhccc---
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-----KTRTIYTSPIKALSNQKYRDFRETFQD--- 142 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-----~~~~lii~Pt~~L~~q~~~~~~~~~~~--- 142 (419)
.++|+++|.++++.++.|+++++.+|||+|||++|++++...... +.++|||+||++|+.|+++.+++++..
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 345899999999999999999999999999999988877655433 788999999999999999999998653
Q ss_pred -cceEeccceecC-------CCcEEEEcHHHHHHHHhcCCC-CCCCccEEEEeCCcccCCCc-chHHHHHHHHhc----C
Q psy2764 143 -VGLVTGDFQINT-------TASCLVMTTEILRSMLYRGSD-VLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL----P 208 (419)
Q Consensus 143 -~~~~~g~~~~~~-------~~~Iiv~Tp~~l~~~~~~~~~-~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~----~ 208 (419)
++.++|+..... +++|+|+||+++...+..... .+.++++||+||||++...+ +...+..++... .
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~ 405 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 405 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCC
Confidence 667888775432 479999999999998887665 67889999999999987654 233332333221 4
Q ss_pred CCCcEEEEeeecCC
Q psy2764 209 KEVCIVMLSATVPN 222 (419)
Q Consensus 209 ~~~~~l~~SAT~~~ 222 (419)
+.++++++|||++.
T Consensus 406 ~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 406 QLPQILGLTASVGV 419 (936)
T ss_dssp CCCEEEEEESCCCC
T ss_pred CcCeEEEecCCccc
Confidence 56899999999964
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.98 E-value=2.9e-33 Score=297.22 Aligned_cols=255 Identities=14% Similarity=0.093 Sum_probs=178.9
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHH-HHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc------
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYA-IALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD------ 142 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~-i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~------ 142 (419)
++|+| ++|.++++.++.|+|++++||||||||+ +.++ +..+...++++||++||++|+.|+++.+++++..
T Consensus 54 ~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~ 131 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTE 131 (1054)
T ss_dssp TCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGG
T ss_pred cCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCcc
Confidence 44557 9999999999999999999999999998 4444 4455567899999999999999999999998753
Q ss_pred --cceEeccceecC---------CCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC---
Q psy2764 143 --VGLVTGDFQINT---------TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--- 208 (419)
Q Consensus 143 --~~~~~g~~~~~~---------~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--- 208 (419)
++.++|+..... .++|+|+||++|..++.+ +.+++++|+||||++++ ++..++.++..++
T Consensus 132 ~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~ 205 (1054)
T 1gku_B 132 NLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHY 205 (1054)
T ss_dssp GSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEE
T ss_pred ceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcch
Confidence 455677654321 289999999999976654 67899999999999887 5677788877663
Q ss_pred --------CCCcEEEEeeecCChHHHHHHh-cCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchh
Q psy2764 209 --------KEVCIVMLSATVPNTLEFADWV-GNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279 (419)
Q Consensus 209 --------~~~~~l~~SAT~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (419)
...|++++|||++...++..++ ..... +.+.........+.+.+.. .
T Consensus 206 ~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~~--~-------------------- 261 (1054)
T 1gku_B 206 DLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAVN--D-------------------- 261 (1054)
T ss_dssp ETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEES--C--------------------
T ss_pred hhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEec--h--------------------
Confidence 4688999999988763222211 11000 0000000001112221110 0
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHH
Q psy2764 280 YLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359 (419)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~ 359 (419)
.....+.+++... +.++||||+|++.|+.+++.|... +.+...|+
T Consensus 262 ---------------------------------~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg 306 (1054)
T 1gku_B 262 ---------------------------------ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTA 306 (1054)
T ss_dssp ---------------------------------CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTT
T ss_pred ---------------------------------hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEec
Confidence 0011233333332 467999999999999999999987 66666665
Q ss_pred HHHHHHHHHHHhcCCcCCCCchhhHHH----HHHHhhhhhhccC
Q psy2764 360 KIHRFFQDSIRNLQNEDDRALPQVKRL----EQLLKNGIGVHHS 399 (419)
Q Consensus 360 ~~~~~r~~~l~~f~~g~~~~~~~vlv~----t~~l~~GIDi~~~ 399 (419)
.+ .+++++|++|+. +|||| |+++++|||+|++
T Consensus 307 ~~----~~~l~~F~~G~~----~VLVaTas~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 307 TK----KGDYEKFVEGEI----DHLIGTAHYYGTLVRGLDLPER 342 (1054)
T ss_dssp SS----SHHHHHHHHTSC----SEEEEECC------CCSCCTTT
T ss_pred cH----HHHHHHHHcCCC----cEEEEecCCCCeeEeccccCCc
Confidence 53 578999999999 99999 9999999999996
No 39
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=2.2e-31 Score=237.84 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=150.0
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCe
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTR 118 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~ 118 (419)
+...|.+ +++++.+. +.+.++++..| +++|.++++.+..++++++++|||+|||++|++++..... .+.+
T Consensus 28 ~~~~f~~-l~l~~~l~---~~l~~~g~~~~---~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~ 100 (237)
T 3bor_A 28 IVDNFDD-MNLKESLL---RGIYAYGFEKP---SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ 100 (237)
T ss_dssp CCCSGGG-SCCCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCC
T ss_pred ccCChhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 3456777 99999998 88888887755 9999999999999999999999999999998777765533 5679
Q ss_pred EEEEcccHHHHHHHHHHHHHhccc----cceEeccceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEe
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiD 186 (419)
+||++||++|+.|+++.++++... +....|+.... ..++|+|+||+++..++..+...+.+++++|+|
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 999999999999999999998754 34455654322 127999999999999998877778899999999
Q ss_pred CCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHH
Q psy2764 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FAD 228 (419)
Q Consensus 187 E~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~ 228 (419)
|||++.+.++...+..++..++.+.|++++|||+++... +++
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 999998888999999999999989999999999987653 444
No 40
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=7.7e-31 Score=229.25 Aligned_cols=175 Identities=17% Similarity=0.264 Sum_probs=150.5
Q ss_pred ccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeEE
Q psy2764 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRTI 120 (419)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~l 120 (419)
..|.+ +++++.+. +.+.++|+..| +++|.++++.+.+++++++.+|||+|||++|++++.... ..+.++|
T Consensus 3 ~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 75 (206)
T 1vec_A 3 NEFED-YCLKRELL---MGIFEMGWEKP---SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAM 75 (206)
T ss_dssp SSGGG-SCCCHHHH---HHHHTTTCCSC---CHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CChhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEE
Confidence 35777 89999988 88888888765 999999999999999999999999999999887776543 2467899
Q ss_pred EEcccHHHHHHHHHHHHHhccc-----cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCC
Q psy2764 121 YTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188 (419)
Q Consensus 121 ii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~ 188 (419)
|++||++|+.|+++.+.++... ++...|+... ...++|+|+||+++...+..+...+.+++++|+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 9999999999999999988643 4556666542 246899999999999998888778899999999999
Q ss_pred cccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH
Q psy2764 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 189 h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 225 (419)
|++.+.++...+..++..++++.|++++|||++....
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 192 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQ 192 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHH
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHH
Confidence 9998888999999999999989999999999986653
No 41
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=241.82 Aligned_cols=193 Identities=14% Similarity=0.165 Sum_probs=156.5
Q ss_pred ecccCCCCccc-ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcC--CcEEEEcCCCCChhHHHHH
Q psy2764 31 LKISNTLPKHV-TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH--NHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~--~~~iv~apTGsGKT~~~~~ 107 (419)
...+.+++.+. +...|.+ +++++.+. +.|.++||..| +++|.++++.++.+ ++++++||||||||++|++
T Consensus 78 ~v~~~~~~~p~~~~~~f~~-l~l~~~l~---~~l~~~g~~~p---t~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~l 150 (300)
T 3fmo_B 78 EVLQRDPNSPLYSVKSFEE-LRLKPQLL---QGVYAMGFNRP---SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150 (300)
T ss_dssp EEECSSTTCCCCCCCCSGG-GTCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHH
T ss_pred eeccCCCCCCcCCcCCHhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHH
Confidence 33444444433 4467777 99999998 88888888876 99999999999887 9999999999999999887
Q ss_pred HHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhccc-----cceEeccceec----CCCcEEEEcHHHHHHHHhc-CC
Q psy2764 108 AIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQIN----TTASCLVMTTEILRSMLYR-GS 174 (419)
Q Consensus 108 ~i~~~~~---~~~~~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~-~~ 174 (419)
++..... .++++||++||++||.|+++.+.++... +....|+.... ..++|+|+||+++..++.+ +.
T Consensus 151 p~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 151 AMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp HHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCC
T ss_pred HHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCC
Confidence 7765432 4568999999999999999999988653 44455655432 3478999999999998866 45
Q ss_pred CCCCCccEEEEeCCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHh
Q psy2764 175 DVLRDLEYVIFDEVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWV 230 (419)
Q Consensus 175 ~~l~~~~~lIiDE~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l 230 (419)
..+.++++|||||||++++ .++...+..++..+++++|+++||||+++... +++.+
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 5688999999999999886 68889999999999999999999999998764 55433
No 42
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=5.5e-31 Score=234.16 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=149.8
Q ss_pred ccccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCe
Q psy2764 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTR 118 (419)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~ 118 (419)
+...|.+ +++++.+. +.|.++||..| +++|.++++.+..|+++++++|||+|||++|++++.... ..+.+
T Consensus 22 ~~~~f~~-l~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 94 (230)
T 2oxc_A 22 EPADFES-LLLSRPVL---EGLRAAGFERP---SPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ 94 (230)
T ss_dssp --CCGGG-GTCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCCHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 4466878 89999988 88888887765 999999999999999999999999999999887766543 34679
Q ss_pred EEEEcccHHHHHHHHHHHHHhccc-----cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeC
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQD-----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDE 187 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~-----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE 187 (419)
+||++||++|+.|+++.+.++... ++.+.|+.... .+++|+|+||+++..++..+...+.+++++|+||
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 999999999999999999998643 45677765422 3589999999999998887777788999999999
Q ss_pred CcccCCCc-chHHHHHHHHhcCCCCcEEEEeeecCChH
Q psy2764 188 VHYINDSE-RGHVWEEVLILLPKEVCIVMLSATVPNTL 224 (419)
Q Consensus 188 ~h~l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 224 (419)
||++.+.+ +...+..++..++...|++++|||+++..
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~ 212 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFL 212 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHH
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHH
Confidence 99998876 89999999999998999999999998654
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=2.4e-31 Score=284.09 Aligned_cols=279 Identities=18% Similarity=0.226 Sum_probs=196.4
Q ss_pred ccCCCCccHHHHHHHHHHhc----CC--cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 68 HTWPFELDVFQKQAIIKLEE----HN--HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 68 ~~~~~~~~~~Q~~ai~~~~~----~~--~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
..+||++||+|.+|++.+.. ++ ++++++|||+|||++|+.++......+.+++|++||++|+.|+++.+.+.+.
T Consensus 598 ~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 598 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 35788899999999998864 55 9999999999999998888777777889999999999999999999998876
Q ss_pred c----cceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh
Q psy2764 142 D----VGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206 (419)
Q Consensus 142 ~----~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~ 206 (419)
. ++.++|.... ...++|+|+||+.+. ....+++++++|+||||++. ......+..
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~ 747 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG-----VRHKERIKA 747 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC-----HHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcC-----hHHHHHHHH
Confidence 4 4455553321 125899999998663 34567899999999999853 234445555
Q ss_pred cCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEe-cCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHH
Q psy2764 207 LPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVS-TLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKE 285 (419)
Q Consensus 207 ~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (419)
++.+.++++||||+..... ...+.... ....+. ......++..++...
T Consensus 748 l~~~~~vl~lSATp~p~~l-~~~~~~~~--~~~~i~~~~~~r~~i~~~~~~~---------------------------- 796 (1151)
T 2eyq_A 748 MRANVDILTLTATPIPRTL-NMAMSGMR--DLSIIATPPARRLAVKTFVREY---------------------------- 796 (1151)
T ss_dssp HHTTSEEEEEESSCCCHHH-HHHHTTTS--EEEECCCCCCBCBCEEEEEEEC----------------------------
T ss_pred hcCCCCEEEEcCCCChhhH-HHHHhcCC--CceEEecCCCCccccEEEEecC----------------------------
Confidence 6678999999999865432 11111111 111100 000111111111100
Q ss_pred HHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcC--CCCChhHHHHH-H
Q psy2764 286 VKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSM--DFSTATEKSKI-H 362 (419)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~--~~~~~~~~~~~-~ 362 (419)
........+...+ ..+++++|||++++.++.+++.|.+. +......|+.+ .
T Consensus 797 ------------------------~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~ 850 (1151)
T 2eyq_A 797 ------------------------DSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 850 (1151)
T ss_dssp ------------------------CHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCH
T ss_pred ------------------------CHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCH
Confidence 0011122333332 34567999999999999999999886 56666666665 7
Q ss_pred HHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh-------hhHHHHHHHHhcCc
Q psy2764 363 RFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP-------ILKEIVEMLFQKGL 417 (419)
Q Consensus 363 ~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~-------~~r~~ie~~f~~g~ 417 (419)
.+|.+++++|++|+. +|||||+++++|||+|+++... ....+++...|.|+
T Consensus 851 ~eR~~il~~F~~g~~----~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 851 RELERVMNDFHHQRF----NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHHHHHHTTSC----CEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHcCCC----cEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 889999999999998 9999999999999999887532 33556666666654
No 44
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=4.2e-31 Score=233.15 Aligned_cols=176 Identities=15% Similarity=0.217 Sum_probs=149.7
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~ 119 (419)
...|.+ +++++.+. +.+.++++..| +++|.++++.+.+++++++++|||+|||++|++++..... .+.++
T Consensus 3 ~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTR-FPFQPFII---EAIKTLRFYKP---TEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQA 75 (219)
T ss_dssp -CCGGG-SCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCHhh-CCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceE
Confidence 356777 89999988 88888887765 9999999999999999999999999999998887765533 46789
Q ss_pred EEEcccHHHHHHHHHHHHHhccc--------cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEE
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD--------VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVI 184 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~--------~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lI 184 (419)
||++||++|+.|+++.+.++... +..+.|+... ..+++|+|+||+++...+..+...+.+++++|
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 99999999999999999988643 3445665432 23579999999999998888777788999999
Q ss_pred EeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH
Q psy2764 185 FDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 185 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 225 (419)
+||||++.+.++...+..++..++++.|++++|||+++...
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLK 196 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGH
T ss_pred EcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHH
Confidence 99999998888999999999999889999999999987654
No 45
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1e-31 Score=267.20 Aligned_cols=305 Identities=13% Similarity=0.079 Sum_probs=197.1
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcc----ccce
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQ----DVGL 145 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~----~~~~ 145 (419)
+++|+++|.+|++.+..++++++++|||+|||++++.++.... ..+.++|||+||++|+.|+++.+.++.. .+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 4478999999999998889999999999999999877766544 3445999999999999999999998733 2556
Q ss_pred Eeccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 146 VTGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 146 ~~g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
++|+.... ...+|+|+||+.+.. .....+.++++||+||||++.. ..+..++..+....++++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 66765544 578999999997643 2335677899999999999864 446777778877899999999997
Q ss_pred ChHH----HHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCc--ccchhhhHHHHHHHHhhhhcC
Q psy2764 222 NTLE----FADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE--FLTRGYLAAKEVKCRKQLEKG 295 (419)
Q Consensus 222 ~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 295 (419)
+... +...++.. .+...... .+...... ................ .....|...+....
T Consensus 264 ~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 327 (510)
T 2oca_A 264 DGKANIMQYVGMFGEI------FKPVTTSK-LMEDGQVT--ELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT------- 327 (510)
T ss_dssp GCSSCHHHHHHHHCSE------ECCCCCC------------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH-------
T ss_pred CCcccHHHhHHhhCCe------EEeeCHHH-HhhCCcCC--CceEEEEeecCChHHhccccccchHHHHHHHh-------
Confidence 6532 22333321 00000000 00000000 0000000000000000 00001111010000
Q ss_pred CCCCCCCCCCCCCCcchhHHHHHHHHHHH---cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHh
Q psy2764 296 GSGGGKLNGPFTRGAEKNLFISFLNYLRK---SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRN 371 (419)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~ 371 (419)
........+.+.+.. ..+.++||||+ +++|+.+++.|.+.+......++.+ .++|.++++.
T Consensus 328 --------------~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~ 392 (510)
T 2oca_A 328 --------------GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTL 392 (510)
T ss_dssp --------------TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH
Confidence 001112233343333 24555677776 8899999999999876655555555 7789999999
Q ss_pred cCCcCCCCchhhHHHH-HHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 372 LQNEDDRALPQVKRLE-QLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 372 f~~g~~~~~~~vlv~t-~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
|++|+. ++|||| +++++|||+|+++. +.....+++...|.|+
T Consensus 393 f~~g~~----~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR 441 (510)
T 2oca_A 393 AENGKG----IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLR 441 (510)
T ss_dssp HHHCCS----CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHT
T ss_pred HhCCCC----CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccc
Confidence 999998 899999 99999999997764 4444566666666554
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=1.9e-31 Score=262.61 Aligned_cols=315 Identities=17% Similarity=0.111 Sum_probs=203.0
Q ss_pred ccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc-cceE
Q psy2764 68 HTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGLV 146 (419)
Q Consensus 68 ~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~ 146 (419)
...+++|+|+|.++++.+..++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++... ++.+
T Consensus 88 ~~~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~ 164 (472)
T 2fwr_A 88 FDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEF 164 (472)
T ss_dssp CCCCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEB
T ss_pred ccCCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEE
Confidence 345677999999999999999999999999999999987776655 688999999999999999999996555 7777
Q ss_pred eccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-
Q psy2764 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE- 225 (419)
Q Consensus 147 ~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~- 225 (419)
+|+.. ...+|+|+||+++...... ...++++||+||||++.+..+.. ++..+ ...+++++|||+.+...
T Consensus 165 ~g~~~--~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~~~~~~ 234 (472)
T 2fwr_A 165 SGRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFEREDGR 234 (472)
T ss_dssp SSSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCCCTTSG
T ss_pred CCCcC--CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCccCCCCH
Confidence 77664 3578999999998765532 12468999999999998766554 44444 36889999999985432
Q ss_pred ---HHHHhcCcCCccEEEEe--cC----CCCccceEEEEeCCccccc---cee----eeccccCc--ccchhhhHHHHHH
Q psy2764 226 ---FADWVGNTKKTKVYVVS--TL----KRPVPLKHFLYVGPVLEKN---QLF----LIREAEGE--FLTRGYLAAKEVK 287 (419)
Q Consensus 226 ---~~~~l~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~--~~~~~~~~~~~~~ 287 (419)
+..+++. .++... .. ..+................ ... ......+. .....+...+.
T Consensus 235 ~~~l~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 308 (472)
T 2fwr_A 235 HEILKEVVGG----KVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM-- 308 (472)
T ss_dssp GGSHHHHTCC----EEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT--
T ss_pred HHHHHHHhCC----eEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH--
Confidence 3333332 111000 00 0000000000000000000 000 00000000 00000000000
Q ss_pred HHhhhhcCCCCCCCCCCCC----------CCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhH
Q psy2764 288 CRKQLEKGGSGGGKLNGPF----------TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATE 357 (419)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~ 357 (419)
.......... .......+...+.+.+....+.++||||++++.++.+++.|....+ +
T Consensus 309 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~----~ 375 (472)
T 2fwr_A 309 ---------ASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAI----T 375 (472)
T ss_dssp ---------TTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBC----C
T ss_pred ---------HhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCccee----e
Confidence 0000000000 0011234557777788777788999999999999999999963322 2
Q ss_pred HHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCcC
Q psy2764 358 KSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGLV 418 (419)
Q Consensus 358 ~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~i 418 (419)
++....+|++++++|++|+. ++||+|+++++|+|+|++++ +.....+++...|.|+.
T Consensus 376 g~~~~~~R~~~~~~F~~g~~----~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 438 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRF----RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRP 438 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSC----SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCC
T ss_pred CCCCHHHHHHHHHHHhCCCC----CEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCC
Confidence 22236779999999999988 99999999999999998764 56667888888887754
No 47
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=1.2e-30 Score=228.24 Aligned_cols=180 Identities=22% Similarity=0.197 Sum_probs=153.5
Q ss_pred cchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh------cCCCe
Q psy2764 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTR 118 (419)
Q Consensus 45 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~------~~~~~ 118 (419)
+|.+ +++++.+. +.+.++++..| +++|.++++.+.+++++++.+|||+|||++|+.++.... ..+++
T Consensus 2 ~f~~-~~l~~~l~---~~l~~~~~~~~---~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~ 74 (207)
T 2gxq_A 2 EFKD-FPLKPEIL---EALHGRGLTTP---TPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPR 74 (207)
T ss_dssp CGGG-SCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCS
T ss_pred Chhh-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCc
Confidence 4667 89999988 88888887765 999999999999999999999999999999887776553 35788
Q ss_pred EEEEcccHHHHHHHHHHHHHhccc--cceEecccee-------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 119 TIYTSPIKALSNQKYRDFRETFQD--VGLVTGDFQI-------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 119 ~lii~Pt~~L~~q~~~~~~~~~~~--~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
++|++||++|+.|+++.+.++... +..+.|+... ..+++|+|+||+++...+..+...+.+++++|+||||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred EEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 999999999999999999999765 5556666542 2358999999999999988877788999999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHHhc
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADWVG 231 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~l~ 231 (419)
++.+.++...+..++..++++.|++++|||+++..+ +++++.
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 998888999999999999889999999999987654 555443
No 48
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=238.45 Aligned_cols=179 Identities=23% Similarity=0.280 Sum_probs=147.4
Q ss_pred cccchhccC--CCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------
Q psy2764 43 QTEWAEMLD--VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------- 113 (419)
Q Consensus 43 ~~~~~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~------- 113 (419)
...|.+ ++ +++.+. +.+.++||..| +++|.++++.+..+++++++||||||||++|++++....
T Consensus 51 ~~~f~~-l~~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~ 123 (262)
T 3ly5_A 51 DTSFAS-LCNLVNENTL---KAIKEMGFTNM---TEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP 123 (262)
T ss_dssp GGCC------CCCHHHH---HHHHHTTCCBC---CHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG
T ss_pred cCChhH-hccccCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccc
Confidence 344444 44 777777 88888887765 999999999999999999999999999999888876432
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccceec-------CCCcEEEEcHHHHHHHHhcCC-CCCCCcc
Q psy2764 114 NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN-------TTASCLVMTTEILRSMLYRGS-DVLRDLE 181 (419)
Q Consensus 114 ~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~-------~~~~Iiv~Tp~~l~~~~~~~~-~~l~~~~ 181 (419)
..+.++||++||++|+.|+++.+++++.. ++.+.|+.... .+++|+|+||+++...+.... ..+.+++
T Consensus 124 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~ 203 (262)
T 3ly5_A 124 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQ 203 (262)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCC
Confidence 25788999999999999999999998765 45566765422 358999999999998877653 5688999
Q ss_pred EEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHH
Q psy2764 182 YVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FAD 228 (419)
Q Consensus 182 ~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~ 228 (419)
++|+||||++.+++++..+..++..++...|+++||||+++..+ +++
T Consensus 204 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 204 CLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred EEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHH
Confidence 99999999999989999999999999999999999999998765 444
No 49
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=3.8e-32 Score=277.85 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=189.7
Q ss_pred cCCCCccHHHHHHHHHHhcC------CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 69 TWPFELDVFQKQAIIKLEEH------NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~~~------~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
..||+||++|+++++.+..+ .+++++||||||||++|++++......+.+++|++||++|+.|+++.+.+++..
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 56778999999999998654 699999999999999998888877777899999999999999999999998753
Q ss_pred ----cceEeccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 143 ----VGLVTGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 143 ----~~~~~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
++.++|+.... ..++|+|+||+.+.. ...+.+++++|+||+|++....+ ..+...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr-----~~l~~~ 513 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQR-----EALMNK 513 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------CCCCSS
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHH-----HHHHHh
Confidence 56678876432 248999999987743 34678999999999998743221 111222
Q ss_pred CCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecC-CCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHH
Q psy2764 208 PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTL-KRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV 286 (419)
Q Consensus 208 ~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (419)
..++++++||||+.....-..+++.. .+.+.... ....++...+ +.
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~~~g~~---~~s~i~~~p~~r~~i~~~~--------------~~---------------- 560 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALAFYGDL---DVTVIDEMPPGRKEVQTML--------------VP---------------- 560 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHHHTCCS---SCEEECCCCSSCCCCEECC--------------CC----------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHhCCc---ceeeeeccCCCCcceEEEE--------------ec----------------
Confidence 35789999999986543322222221 11111110 0001111100 00
Q ss_pred HHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcch--------hhHHHHHHHhhc---CCCCCh
Q psy2764 287 KCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSR--------KRCDQNAANLLS---MDFSTA 355 (419)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~--------~~~~~l~~~L~~---~~~~~~ 355 (419)
.......++.+.+.+ ..+.+++|||+++ ..++.+++.|.. .++...
T Consensus 561 ---------------------~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~ 617 (780)
T 1gm5_A 561 ---------------------MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLG 617 (780)
T ss_dssp ---------------------SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBC
T ss_pred ---------------------cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEE
Confidence 001111222332222 3456799999966 457889999988 356666
Q ss_pred hHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh-------hhHHHHHHHHhcCc
Q psy2764 356 TEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP-------ILKEIVEMLFQKGL 417 (419)
Q Consensus 356 ~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~-------~~r~~ie~~f~~g~ 417 (419)
..|+.+ .++|.+++++|++|+. +|||||+++++|||+|++++.. ....+++...|.|+
T Consensus 618 ~lHG~m~~~eR~~v~~~F~~G~~----~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 618 LMHGRLSQEEKDRVMLEFAEGRY----DILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGR 683 (780)
T ss_dssp CCCSSSCCSCSHHHHHHHTTTSS----SBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCC
T ss_pred EEeCCCCHHHHHHHHHHHHCCCC----eEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCc
Confidence 666665 6789999999999998 9999999999999999988621 23456666666654
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=3.9e-31 Score=265.66 Aligned_cols=314 Identities=14% Similarity=0.071 Sum_probs=202.5
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEec
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTG 148 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g 148 (419)
+|+++|..+++.++.|+ |+.++||+|||++|.+++....-.+..++||+||++||.|.++.+..++.. ++++.|
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~g 160 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLN 160 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 45999999999999998 999999999999988887643345788999999999999999999887654 556777
Q ss_pred cceec-----CCCcEEEEcHHHH-HHHHhcC------CCCCCCccEEEEeCCcccC-CCc---------------chHHH
Q psy2764 149 DFQIN-----TTASCLVMTTEIL-RSMLYRG------SDVLRDLEYVIFDEVHYIN-DSE---------------RGHVW 200 (419)
Q Consensus 149 ~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~------~~~l~~~~~lIiDE~h~l~-~~~---------------~~~~~ 200 (419)
+.+.. .+++|+|+||++| .+++... ...++.+.++|+||||.++ +.+ +...+
T Consensus 161 g~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i 240 (844)
T 1tf5_A 161 SMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA 240 (844)
T ss_dssp TSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHH
T ss_pred CCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHH
Confidence 75432 2489999999999 5554432 3457899999999999876 653 45677
Q ss_pred HHHHHhcC---------CCCcEE-----------------EEeeecCChHH-H-----HHHhcCcCCccE------EEEe
Q psy2764 201 EEVLILLP---------KEVCIV-----------------MLSATVPNTLE-F-----ADWVGNTKKTKV------YVVS 242 (419)
Q Consensus 201 ~~i~~~~~---------~~~~~l-----------------~~SAT~~~~~~-~-----~~~l~~~~~~~~------~~~~ 242 (419)
..++..++ +..|++ ++|||.+.... + +..+.......+ ..++
T Consensus 241 ~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivD 320 (844)
T 1tf5_A 241 NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVD 320 (844)
T ss_dssp HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBC
T ss_pred HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEee
Confidence 88888886 367777 88999753221 1 222221111110 1111
Q ss_pred c-CCCC-------------------ccc---eEE--EEe---------------CCcccccc--------eeeeccccCc
Q psy2764 243 T-LKRP-------------------VPL---KHF--LYV---------------GPVLEKNQ--------LFLIREAEGE 274 (419)
Q Consensus 243 ~-~~~~-------------------~~~---~~~--~~~---------------~~~~~~~~--------~~~~~~~~~~ 274 (419)
. ..+. +.+ ... .+. ........ ....+.++..
T Consensus 321 e~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p 400 (844)
T 1tf5_A 321 SFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP 400 (844)
T ss_dssp TTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSC
T ss_pred cccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCC
Confidence 0 0000 000 000 000 00000000 0000000000
Q ss_pred ccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH--cCCCCEEEEEcchhhHHHHHHHhhcCCC
Q psy2764 275 FLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK--SQNLPVVLFTLSRKRCDQNAANLLSMDF 352 (419)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~~~~~ 352 (419)
..-. ...+........++.++.+.+.. ..+.++||||+|++.++.++..|...|+
T Consensus 401 ~~r~-----------------------d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi 457 (844)
T 1tf5_A 401 VVRD-----------------------DRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI 457 (844)
T ss_dssp CCCE-----------------------ECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTC
T ss_pred cccc-----------------------cCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 0000 00000011233455677776643 3456799999999999999999999999
Q ss_pred CChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhc--------------cCCCChhhHHHHHHHHhcCc
Q psy2764 353 STATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVH--------------HSGILPILKEIVEMLFQKGL 417 (419)
Q Consensus 353 ~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~--------------~~~l~~~~r~~ie~~f~~g~ 417 (419)
.....++.. ..+|..+.++|+.| .|+||||+++||+||+ +-++|...|.+++...+.|+
T Consensus 458 ~~~vLhg~~~~rEr~ii~~ag~~g------~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGR 531 (844)
T 1tf5_A 458 PHQVLNAKNHEREAQIIEEAGQKG------AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 531 (844)
T ss_dssp CCEEECSSCHHHHHHHHTTTTSTT------CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSG
T ss_pred CEEEeeCCccHHHHHHHHHcCCCC------eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCcccc
Confidence 988866654 44444444555543 5799999999999999 34578899999999888875
No 51
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=3.1e-30 Score=228.46 Aligned_cols=179 Identities=20% Similarity=0.212 Sum_probs=149.7
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~ 119 (419)
...|.+ +++++.+. +.+.++++..| +++|.++++.+..++++++++|||+|||++|++++.... ..+.++
T Consensus 13 ~~~f~~-l~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~ 85 (224)
T 1qde_A 13 VYKFDD-MELDENLL---RGVFGYGFEEP---SAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 85 (224)
T ss_dssp CCCGGG-GTCCHHHH---HHHHHHTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred cCChhh-cCCCHHHH---HHHHHCCCCCC---cHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence 456877 99999988 88888877655 999999999999999999999999999998777766543 346799
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEeccceec------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCc
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVH 189 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h 189 (419)
||++||++|+.|+++.+.++... +..+.|+.... ..++|+|+||+++...+......+.+++++|+||||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 99999999999999999998654 44566655432 248999999999999888877788999999999999
Q ss_pred ccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHH
Q psy2764 190 YINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FAD 228 (419)
Q Consensus 190 ~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~ 228 (419)
++.+.++...+..++..++++.|++++|||+++... +.+
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHH
Confidence 998888999999999999989999999999987653 443
No 52
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=231.31 Aligned_cols=180 Identities=23% Similarity=0.254 Sum_probs=151.3
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-------cC
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-------NH 115 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-------~~ 115 (419)
...|.+ +++++.+. +.|.++++..| +++|.++++.+..++++++++|||+|||++|++++.... ..
T Consensus 24 ~~~f~~-~~l~~~l~---~~l~~~~~~~~---~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~ 96 (236)
T 2pl3_A 24 ITRFSD-FPLSKKTL---KGLQEAQYRLV---TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTD 96 (236)
T ss_dssp CSBGGG-SCCCHHHH---HHHHHTTCCBC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred cCCHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccC
Confidence 456777 99999988 88888888765 999999999999999999999999999999888766432 35
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccc----cceEeccceec------CCCcEEEEcHHHHHHHHhcC-CCCCCCccEEE
Q psy2764 116 KTRTIYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQIN------TTASCLVMTTEILRSMLYRG-SDVLRDLEYVI 184 (419)
Q Consensus 116 ~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~~------~~~~Iiv~Tp~~l~~~~~~~-~~~l~~~~~lI 184 (419)
+.++||++||++|+.|+++.+.++... ++.++|+.... .+++|+|+||+++...+... ...+.+++++|
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 789999999999999999999998754 55667765432 36899999999999887664 45678999999
Q ss_pred EeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHH
Q psy2764 185 FDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADW 229 (419)
Q Consensus 185 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~ 229 (419)
+||||++.++++...+..++..++++.|++++|||+++... +++.
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHH
Confidence 99999998888999999999999999999999999987654 4443
No 53
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=7.9e-32 Score=270.63 Aligned_cols=262 Identities=12% Similarity=0.068 Sum_probs=188.5
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccc--
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF-- 150 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~-- 150 (419)
++|+|+++++.++++++++++||||||||++|++++. .+...+.++||++||++|+.|+++.+... .++ +.+..
T Consensus 172 ~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~--~v~-~~~~~l~ 248 (618)
T 2whx_A 172 GEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL--PIR-YQTPAVK 248 (618)
T ss_dssp CCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEE-ECCTTSS
T ss_pred CCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC--cee-Eecccce
Confidence 4778887888899999999999999999999777655 34456789999999999999999888632 222 22211
Q ss_pred -eecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEeeecCChHHHHH
Q psy2764 151 -QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLSATVPNTLEFAD 228 (419)
Q Consensus 151 -~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~ 228 (419)
....+..+.++|.+.+...+... ..+.++++||+||||++ +.++...+..++..++ .+.|+++||||++.... .
T Consensus 249 ~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~--~ 324 (618)
T 2whx_A 249 SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--P 324 (618)
T ss_dssp CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC--S
T ss_pred eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh--h
Confidence 12334567788999887666554 35889999999999998 5567777777777765 68999999999976532 1
Q ss_pred HhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCC
Q psy2764 229 WVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTR 308 (419)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (419)
+... . +....+...... ..
T Consensus 325 ~~~~-------------~--~~~~~v~~~~~~---~~------------------------------------------- 343 (618)
T 2whx_A 325 FPQS-------------N--SPIEDIEREIPE---RS------------------------------------------- 343 (618)
T ss_dssp SCCC-------------S--SCEEEEECCCCS---SC-------------------------------------------
T ss_pred hhcc-------------C--CceeeecccCCH---HH-------------------------------------------
Confidence 1110 0 000000000000 00
Q ss_pred CcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHH
Q psy2764 309 GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388 (419)
Q Consensus 309 ~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~ 388 (419)
.+ .+.+.+.. ..+++||||+|++.|+.+++.|...++.....|+. +|.+++++|++|+. +|||||+
T Consensus 344 --~~----~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~---~R~~~l~~F~~g~~----~VLVaTd 409 (618)
T 2whx_A 344 --WN----TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK---TFDTEYPKTKLTDW----DFVVTTD 409 (618)
T ss_dssp --CS----SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT---THHHHTTHHHHSCC----SEEEECG
T ss_pred --HH----HHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH---HHHHHHHhhcCCCc----EEEEECc
Confidence 00 11112222 35579999999999999999999999887776653 68889999999998 9999999
Q ss_pred HHhhhhhhccCCC--------------------------ChhhHHHHHHHHhcCcC
Q psy2764 389 LLKNGIGVHHSGI--------------------------LPILKEIVEMLFQKGLV 418 (419)
Q Consensus 389 ~l~~GIDi~~~~l--------------------------~~~~r~~ie~~f~~g~i 418 (419)
++++|||+| ++. |.....++++..|.|+-
T Consensus 410 v~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 410 ISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp GGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred HHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCC
Confidence 999999996 543 46667888888887753
No 54
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=4.2e-31 Score=271.77 Aligned_cols=306 Identities=13% Similarity=0.123 Sum_probs=212.0
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHH-hcCCcEEEEcCCCCChhHHHHHHHHHH---hc--CC
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIALS---QN--HK 116 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~-~~~~~~iv~apTGsGKT~~~~~~i~~~---~~--~~ 116 (419)
...|.+ +++++.+. +.+...+ .. |++.|+++++.+ ..+++++++||||||||+. +++... .. .+
T Consensus 71 ~~~f~~-~~l~~~~~---~~l~~r~-~l---P~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g 140 (773)
T 2xau_A 71 INPFTG-REFTPKYV---DILKIRR-EL---PVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLEN 140 (773)
T ss_dssp BCTTTC-SBCCHHHH---HHHHHHT-TS---GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGT
T ss_pred CCCccc-cCCCHHHH---HHHHHhh-cC---ChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCC
Confidence 456777 88888877 6666555 44 488999999876 5678899999999999984 333222 11 26
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhcc-ccceEecc-----ceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcc
Q psy2764 117 TRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTGD-----FQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHY 190 (419)
Q Consensus 117 ~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g~-----~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~ 190 (419)
.++++++|+++|+.|+++++.+..+ .++...|. .......+|+++||+++...+... ..+.++++||+||+|.
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHE 219 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGG
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccc
Confidence 7899999999999999998877654 24333331 223356899999999998877654 4588999999999995
Q ss_pred -cCCCc-chHHHHHHHHhcCCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeee
Q psy2764 191 -INDSE-RGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLI 268 (419)
Q Consensus 191 -l~~~~-~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (419)
.++.. ....+..+.... ++.|+++||||++ ...+.+|++.. .+ +....+..++++++.....
T Consensus 220 R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~-~~~l~~~~~~~---~v--i~v~gr~~pv~~~~~~~~~--------- 283 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKRR-PDLKIIIMSATLD-AEKFQRYFNDA---PL--LAVPGRTYPVELYYTPEFQ--------- 283 (773)
T ss_dssp CCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSC-CHHHHHHTTSC---CE--EECCCCCCCEEEECCSSCC---------
T ss_pred cccchHHHHHHHHHHHHhC-CCceEEEEecccc-HHHHHHHhcCC---Cc--ccccCcccceEEEEecCCc---------
Confidence 33321 223344444333 5799999999994 55678888642 11 2223344444433221110
Q ss_pred ccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhh
Q psy2764 269 REAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348 (419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~ 348 (419)
..+ ....+..+.+.+.....+++||||++++.|+.+++.|.
T Consensus 284 ---------~~~------------------------------~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~ 324 (773)
T 2xau_A 284 ---------RDY------------------------------LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKIS 324 (773)
T ss_dssp ---------SCH------------------------------HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHH
T ss_pred ---------hhH------------------------------HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHH
Confidence 000 01123455555555567789999999999999999997
Q ss_pred c-----------CCCCChhHHHHH-HHHHHHHHHhcC-----CcCCCCchhhHHHHHHHhhhhhhccCCC----------
Q psy2764 349 S-----------MDFSTATEKSKI-HRFFQDSIRNLQ-----NEDDRALPQVKRLEQLLKNGIGVHHSGI---------- 401 (419)
Q Consensus 349 ~-----------~~~~~~~~~~~~-~~~r~~~l~~f~-----~g~~~~~~~vlv~t~~l~~GIDi~~~~l---------- 401 (419)
. .++.....++.+ .++|.++++.|+ +|.. +|+|||+++++|||||++.+
T Consensus 325 ~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~----kVlVAT~iae~GidIp~v~~VId~g~~k~~ 400 (773)
T 2xau_A 325 LEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR----KVVISTNIAETSLTIDGIVYVVDPGFSKQK 400 (773)
T ss_dssp HHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE----EEEEECTHHHHTCCCTTEEEEEECSEEEEE
T ss_pred HHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce----EEEEeCcHHHhCcCcCCeEEEEeCCCccce
Confidence 5 355555555555 788999999999 8888 99999999999999996543
Q ss_pred --------------ChhhHHHHHHHHhcCcC
Q psy2764 402 --------------LPILKEIVEMLFQKGLV 418 (419)
Q Consensus 402 --------------~~~~r~~ie~~f~~g~i 418 (419)
+...-.++++..+.|+.
T Consensus 401 ~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 401 VYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp EEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred eeccccCccccccccCCHHHHHhhccccCCC
Confidence 34566788888888763
No 55
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=7.4e-30 Score=225.38 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=149.8
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc---CCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN---HKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~---~~~~~ 119 (419)
...|.+ +++++.+. +.|.++++..| +++|.++++.+.+++++++++|||+|||++|++++..... .+.++
T Consensus 13 ~~~f~~-~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRD-FLLKPELL---RAIVDCGFEHP---SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 85 (220)
T ss_dssp -CCSTT-SCCCHHHH---HHHHHTTCCCC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCE
T ss_pred CCCHhh-cCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEE
Confidence 356777 99999998 88888887655 9999999999999999999999999999998887776533 34589
Q ss_pred EEEcccHHHHHHHHHHHHHhcc-----ccceEeccceec--------CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEe
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQ-----DVGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~-----~~~~~~g~~~~~--------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiD 186 (419)
||++||++|+.|+++.++++.. .++.++|+.... ..++|+|+||+++..++......+.+++++|+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 9999999999999999999854 255677765422 246999999999999888877788999999999
Q ss_pred CCcccCC-CcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHH
Q psy2764 187 EVHYIND-SERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FAD 228 (419)
Q Consensus 187 E~h~l~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~ 228 (419)
|||++.+ .++...+..++..++.+.|++++|||+++..+ +++
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 9999876 46778888888888889999999999998754 444
No 56
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=6.4e-30 Score=229.73 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=151.6
Q ss_pred cccchhccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh---cCCCeE
Q psy2764 43 QTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ---NHKTRT 119 (419)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~---~~~~~~ 119 (419)
...|.+ +++++.+. +.|.++|+..| +++|.++++.+..+++++++||||+|||++|++++.... ..+.++
T Consensus 42 ~~~f~~-l~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~ 114 (249)
T 3ber_A 42 TKTFKD-LGVTDVLC---EACDQLGWTKP---TKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFA 114 (249)
T ss_dssp HCCTGG-GTCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCE
T ss_pred cCCHHH-cCCCHHHH---HHHHHcCCCCC---CHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceE
Confidence 456777 99999988 88888888765 999999999999999999999999999999887766432 245789
Q ss_pred EEEcccHHHHHHHHHHHHHhccc----cceEecccee-------cCCCcEEEEcHHHHHHHHhc-CCCCCCCccEEEEeC
Q psy2764 120 IYTSPIKALSNQKYRDFRETFQD----VGLVTGDFQI-------NTTASCLVMTTEILRSMLYR-GSDVLRDLEYVIFDE 187 (419)
Q Consensus 120 lii~Pt~~L~~q~~~~~~~~~~~----~~~~~g~~~~-------~~~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIiDE 187 (419)
||++||++|+.|+++.++++... ++.+.|+... ..+++|+|+||+++...+.. ....+.+++++|+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 99999999999999999988653 4556776542 24689999999999988876 445688999999999
Q ss_pred CcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH-HHHH
Q psy2764 188 VHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE-FADW 229 (419)
Q Consensus 188 ~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~-~~~~ 229 (419)
||++.+.++...+..++..++.+.|+++||||+++... +++.
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHH
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHH
Confidence 99998889999999999999989999999999987654 4443
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=3e-31 Score=258.70 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=178.8
Q ss_pred ccHHHHHHHHHHhcCCcE-EEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccc-
Q psy2764 74 LDVFQKQAIIKLEEHNHV-FVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF- 150 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~-iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~- 150 (419)
++|+|+ +++.+++++++ +++||||||||++|+.++. .....+.++||++||++|+.|+++.+.... ++...+..
T Consensus 5 ~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~--v~~~~~~~~ 81 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLP--IRYQTPAVK 81 (451)
T ss_dssp CSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEECCTTCS
T ss_pred CCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCce--eeeeecccc
Confidence 488875 78888877776 9999999999998777654 345577899999999999999999885321 22111111
Q ss_pred -eecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh-cCCCCcEEEEeeecCChHHHHH
Q psy2764 151 -QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL-LPKEVCIVMLSATVPNTLEFAD 228 (419)
Q Consensus 151 -~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~~~~ 228 (419)
....+..|.++|++.+...+... ..+.+++++|+||||++ +..+...+..+... ..++.|+++||||++.... .
T Consensus 82 ~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~ 157 (451)
T 2jlq_A 82 SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--P 157 (451)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--S
T ss_pred ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccch--h
Confidence 22345679999999988777554 45789999999999977 33333333333322 3457999999999975332 1
Q ss_pred HhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCC
Q psy2764 229 WVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTR 308 (419)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (419)
++.. ..+. ... ..... ... |.
T Consensus 158 ~~~~--------------~~~~-~~~-~~~~p--~~~--------------~~--------------------------- 178 (451)
T 2jlq_A 158 FPQS--------------NSPI-EDI-EREIP--ERS--------------WN--------------------------- 178 (451)
T ss_dssp SCCC--------------SSCE-EEE-ECCCC--SSC--------------CS---------------------------
T ss_pred hhcC--------------CCce-Eec-CccCC--chh--------------hH---------------------------
Confidence 1110 0000 000 00000 000 00
Q ss_pred CcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHH
Q psy2764 309 GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388 (419)
Q Consensus 309 ~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~ 388 (419)
.+.+.+.. ..+++||||+|++.|+.+++.|...|+.....++.. +++++++|++|+. +|||||+
T Consensus 179 --------~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~---~~~~~~~f~~g~~----~vLVaT~ 242 (451)
T 2jlq_A 179 --------TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT---FDTEYPKTKLTDW----DFVVTTD 242 (451)
T ss_dssp --------SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT---HHHHGGGGGSSCC----SEEEECG
T ss_pred --------HHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH---HHHHHHhhccCCc----eEEEECC
Confidence 00111222 345799999999999999999999988776655543 4679999999999 9999999
Q ss_pred HHhhhhhhccCC--------------------------CChhhHHHHHHHHhcCc
Q psy2764 389 LLKNGIGVHHSG--------------------------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 389 ~l~~GIDi~~~~--------------------------l~~~~r~~ie~~f~~g~ 417 (419)
++++|||+|+ + +|.....+++...+.|+
T Consensus 243 v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR 296 (451)
T 2jlq_A 243 ISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296 (451)
T ss_dssp GGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred HHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCC
Confidence 9999999996 3 44556688888888775
No 58
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=228.06 Aligned_cols=187 Identities=19% Similarity=0.247 Sum_probs=146.6
Q ss_pred ecccCCCCcccccccchh---ccCCCccccccccccccccccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHH
Q psy2764 31 LKISNTLPKHVTQTEWAE---MLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~ 107 (419)
...+.+.|. +...|.+ .+++++.+. +.+.++|+..| +++|.++++.+.++++++++||||+|||++|++
T Consensus 14 ~~~~~~~p~--~~~~f~~l~~~~~l~~~l~---~~l~~~g~~~~---~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l 85 (245)
T 3dkp_A 14 HVQGTDLPD--PIATFQQLDQEYKINSRLL---QNILDAGFQMP---TPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp EEESSSCCC--CCSSHHHHHHHHCCCHHHH---HHHHHTTCCSC---CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred EecCCCCCC--cccCHHHhhhccCCCHHHH---HHHHHCCCCCC---CHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 334444444 3345554 258999888 88888888765 999999999999999999999999999999888
Q ss_pred HHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccc----eEeccce--------ecCCCcEEEEcHHHHHHHHh
Q psy2764 108 AIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVG----LVTGDFQ--------INTTASCLVMTTEILRSMLY 171 (419)
Q Consensus 108 ~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~----~~~g~~~--------~~~~~~Iiv~Tp~~l~~~~~ 171 (419)
++..... .+.++||++||++|+.|+++.+.+++...+ .+.|+.. ...+++|+|+||+++..++.
T Consensus 86 ~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 165 (245)
T 3dkp_A 86 PILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK 165 (245)
T ss_dssp HHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHH
T ss_pred HHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHH
Confidence 8765433 567899999999999999999999876533 3333321 23457999999999999887
Q ss_pred cC--CCCCCCccEEEEeCCcccCC---CcchHHHHHHHHhc-CCCCcEEEEeeecCChHH
Q psy2764 172 RG--SDVLRDLEYVIFDEVHYIND---SERGHVWEEVLILL-PKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 172 ~~--~~~l~~~~~lIiDE~h~l~~---~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~ 225 (419)
.. ...+.+++++|+||||++.+ .++...+..++..+ +.+.|+++||||+++...
T Consensus 166 ~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 166 QDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE 225 (245)
T ss_dssp SSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred hCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHH
Confidence 76 45688999999999999876 35667777776665 457899999999987654
No 59
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=3.4e-31 Score=267.67 Aligned_cols=276 Identities=14% Similarity=0.075 Sum_probs=185.8
Q ss_pred ccccccccc-CCC-CccHHHH-----HHHHHHh------cCCcEEEEcCCCCChhHHHHHHHHH-HhcCCCeEEEEcccH
Q psy2764 61 AKVPIMAHT-WPF-ELDVFQK-----QAIIKLE------EHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIK 126 (419)
Q Consensus 61 ~~l~~~~~~-~~~-~~~~~Q~-----~ai~~~~------~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~~~lii~Pt~ 126 (419)
.++..+||. ++. .|+++|+ ++|+.++ ++++++++||||||||++|++++.. +...+.++||++||+
T Consensus 201 ~~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr 280 (673)
T 2wv9_A 201 IGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTR 280 (673)
T ss_dssp EEEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSH
T ss_pred EEeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHH
Confidence 467777876 333 2699999 9999877 8999999999999999998777653 356778999999999
Q ss_pred HHHHHHHHHHHHhccccceEeccce--ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHH
Q psy2764 127 ALSNQKYRDFRETFQDVGLVTGDFQ--INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL 204 (419)
Q Consensus 127 ~L~~q~~~~~~~~~~~~~~~~g~~~--~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~ 204 (419)
+|+.|+++.+..+. ++...+... ...+.-+-+.+.+.+...+... ..+.+++++|+||||++ +..+...+..+.
T Consensus 281 ~La~Q~~~~l~~~~--i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~ 356 (673)
T 2wv9_A 281 VVAAEMAEALRGLP--VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIA 356 (673)
T ss_dssp HHHHHHHHHTTTSC--CEECCC---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--eeeecccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHH
Confidence 99999999987652 222222111 1122334556666665544443 56889999999999998 222233344444
Q ss_pred HhcC-CCCcEEEEeeecCChHHHHHHhcCcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHH
Q psy2764 205 ILLP-KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAA 283 (419)
Q Consensus 205 ~~~~-~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (419)
..++ .+.|+++||||++.... .+ .....++...........
T Consensus 357 ~~~~~~~~~vl~~SAT~~~~i~--~~--------------~~~~~~i~~v~~~~~~~~---------------------- 398 (673)
T 2wv9_A 357 TRVEAGEAAAIFMTATPPGTSD--PF--------------PDTNSPVHDVSSEIPDRA---------------------- 398 (673)
T ss_dssp HHHHTTSCEEEEECSSCTTCCC--SS--------------CCCSSCEEEEECCCCSSC----------------------
T ss_pred HhccccCCcEEEEcCCCChhhh--hh--------------cccCCceEEEeeecCHHH----------------------
Confidence 4443 67999999999975432 00 000111111100000000
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHH
Q psy2764 284 KEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHR 363 (419)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~ 363 (419)
... ++..+. ...+++||||++++.|+.+++.|...++.....|+ +
T Consensus 399 ---------------------------~~~----~l~~l~-~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg---~ 443 (673)
T 2wv9_A 399 ---------------------------WSS----GFEWIT-DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR---K 443 (673)
T ss_dssp ---------------------------CSS----CCHHHH-SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS---S
T ss_pred ---------------------------HHH----HHHHHH-hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh---H
Confidence 000 111112 24667999999999999999999999888777666 3
Q ss_pred HHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC--------------------------CChhhHHHHHHHHhcCc
Q psy2764 364 FFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG--------------------------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 364 ~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~--------------------------l~~~~r~~ie~~f~~g~ 417 (419)
+|.+++++|++|+. +|||||+++++|||+| ++ +|.....+++...|.|+
T Consensus 444 eR~~v~~~F~~g~~----~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR 518 (673)
T 2wv9_A 444 SYDTEYPKCKNGDW----DFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGR 518 (673)
T ss_dssp SHHHHGGGGGTCCC----SEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCc----eEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCC
Confidence 68899999999999 9999999999999999 54 34445788888888775
Q ss_pred C
Q psy2764 418 V 418 (419)
Q Consensus 418 i 418 (419)
-
T Consensus 519 ~ 519 (673)
T 2wv9_A 519 N 519 (673)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=1.3e-30 Score=259.74 Aligned_cols=254 Identities=17% Similarity=0.097 Sum_probs=183.1
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc-ccceEeccceec
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ-DVGLVTGDFQIN 153 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~-~~~~~~g~~~~~ 153 (419)
+++|+++++.+.++++++++||||||||+++.+++.. .+.+++|++|||+|+.|+++++.+.++ .++...|+....
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~ 295 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTIT 295 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEEC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEecc
Confidence 4455555556678899999999999999775554432 467999999999999999999987655 478888888888
Q ss_pred CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCc--EEEEeeecCChHHHHHHhc
Q psy2764 154 TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVC--IVMLSATVPNTLEFADWVG 231 (419)
Q Consensus 154 ~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~--~l~~SAT~~~~~~~~~~l~ 231 (419)
.+.+|+|+||++| +......+.+++++||||||++ +.++...+..++..++...+ ++++|||+++...
T Consensus 296 ~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------ 365 (666)
T 3o8b_A 296 TGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------ 365 (666)
T ss_dssp CCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------
T ss_pred CCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------
Confidence 8899999999998 3455667888999999999765 55677778888888886666 7888999986311
Q ss_pred CcCCccEEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcc
Q psy2764 232 NTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAE 311 (419)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (419)
. ..+. +......... . ...... .
T Consensus 366 ~------------~~p~-i~~v~~~~~~--~---i~~~~~---------------------------------------~ 388 (666)
T 3o8b_A 366 V------------PHPN-IEEVALSNTG--E---IPFYGK---------------------------------------A 388 (666)
T ss_dssp C------------CCTT-EEEEECBSCS--S---EEETTE---------------------------------------E
T ss_pred c------------CCcc-eEEEeecccc--h---hHHHHh---------------------------------------h
Confidence 0 0000 0000000000 0 000000 0
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHh
Q psy2764 312 KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLK 391 (419)
Q Consensus 312 ~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~ 391 (419)
.. +.....+++||||+|++.|+.+++.|...|+.....|+.+.. +.|+++.. +|||||++++
T Consensus 389 ~~--------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q------~er~~~~~----~VLVATdVae 450 (666)
T 3o8b_A 389 IP--------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDV------SVIPTIGD----VVVVATDALM 450 (666)
T ss_dssp EC--------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCG------GGSCSSSC----EEEEECTTHH
T ss_pred hh--------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCH------HHHHhCCC----cEEEECChHH
Confidence 00 012346679999999999999999999999988777776631 13555665 8999999999
Q ss_pred hhhhhccCC---------------------------CChhhHHHHHHHHhcCc
Q psy2764 392 NGIGVHHSG---------------------------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 392 ~GIDi~~~~---------------------------l~~~~r~~ie~~f~~g~ 417 (419)
+|||++ ++ +|.....++++..|.|+
T Consensus 451 rGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 451 TGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp HHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred ccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 999986 66 45566789998888875
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=2.9e-30 Score=260.97 Aligned_cols=318 Identities=15% Similarity=0.205 Sum_probs=178.2
Q ss_pred CCccHHHHHHHHHHhc-----CCcEEEEcCCCCChhHHHHHHHHHHhc---------CCCeEEEEcccHHHHHHHH-HHH
Q psy2764 72 FELDVFQKQAIIKLEE-----HNHVFVTAHTSAGKTVIAEYAIALSQN---------HKTRTIYTSPIKALSNQKY-RDF 136 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~-----~~~~iv~apTGsGKT~~~~~~i~~~~~---------~~~~~lii~Pt~~L~~q~~-~~~ 136 (419)
+.|+++|.+|++.+.. ++++++++|||+|||++++.++..+.. .++++|||+||++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999999998754 467999999999999997666655433 5689999999999999999 777
Q ss_pred HHhccccceEeccceecCCCcEEEEcHHHHHHHHhc----CCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCc
Q psy2764 137 RETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYR----GSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVC 212 (419)
Q Consensus 137 ~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~----~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~ 212 (419)
+.+...++.+.++ ......+|+|+||+++...... .......+++||+||||++.... ...+..++..++ +.+
T Consensus 257 ~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~ 333 (590)
T 3h1t_A 257 TPFGDARHKIEGG-KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAF 333 (590)
T ss_dssp TTTCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSE
T ss_pred Hhcchhhhhhhcc-CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cce
Confidence 7766555544433 3446789999999998776532 22345678999999999986532 234566667766 578
Q ss_pred EEEEeeecCChH--HHHHHhcCcCCccEEEEecC-----CCCccceEEEEeCCccc--------ccceeeeccccCcccc
Q psy2764 213 IVMLSATVPNTL--EFADWVGNTKKTKVYVVSTL-----KRPVPLKHFLYVGPVLE--------KNQLFLIREAEGEFLT 277 (419)
Q Consensus 213 ~l~~SAT~~~~~--~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 277 (419)
+++||||+.+.. +...+++.. ++.+... ....+.....+...... .............+..
T Consensus 334 ~l~lTATP~~~~~~~~~~~f~~~----~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (590)
T 3h1t_A 334 QIGMTATPLREDNRDTYRYFGNP----IYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQT 409 (590)
T ss_dssp EEEEESSCSCTTTHHHHHHSCSC----SEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------C
T ss_pred EEEeccccccccchhHHHHcCCc----eEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCH
Confidence 999999987654 355555541 1111100 00011111111110000 0000000000011112
Q ss_pred hhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH-cCCCCEEEEEcchhhHHHHHHHhhcCCCC---
Q psy2764 278 RGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK-SQNLPVVLFTLSRKRCDQNAANLLSMDFS--- 353 (419)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~LIF~~t~~~~~~l~~~L~~~~~~--- 353 (419)
..+...+... ...+.+.+.+.+.+.. ...+++||||+++++|+.+++.|...+..
T Consensus 410 ~~~~~~~~~~---------------------~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~ 468 (590)
T 3h1t_A 410 KDFERVIALK---------------------ARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSR 468 (590)
T ss_dssp CSHHHHHHHH---------------------HTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHT
T ss_pred HHhhhHhcCh---------------------HHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhc
Confidence 2222211110 1112233445555544 34478999999999999999999775431
Q ss_pred -----ChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCcC
Q psy2764 354 -----TATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGLV 418 (419)
Q Consensus 354 -----~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~i 418 (419)
....++.+.+.|++++++|++|+.. ...++++|+++++|||+|+++. +.....+++...|-|++
T Consensus 469 ~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~-~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 469 KHPDYVARVTSEEGKIGKGHLSRFQELETS-TPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRL 543 (590)
T ss_dssp TCTTSEEECSSTTHHHHHHHHHHHHCTTCC-CCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCC
T ss_pred cCCCeEEEEeCCChHHHHHHHHHHhCCCCC-CCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhccc
Confidence 1123344444699999999987761 1138889999999999998765 44555677777776653
No 62
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=1e-29 Score=254.81 Aligned_cols=297 Identities=14% Similarity=0.063 Sum_probs=169.5
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceEe
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLVT 147 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~~ 147 (419)
..|+++|..+++.++.|+ ++.++||+|||++|.+++......+.+++|++||++||.|.++.+..++.. +++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~ 150 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINL 150 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 346999999999999987 999999999999988887644446789999999999999999999888654 56677
Q ss_pred ccceec-----CCCcEEEEcHHHH-HHHHhcC------CCCCCCccEEEEeCCcccC-CCc---------------chHH
Q psy2764 148 GDFQIN-----TTASCLVMTTEIL-RSMLYRG------SDVLRDLEYVIFDEVHYIN-DSE---------------RGHV 199 (419)
Q Consensus 148 g~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~------~~~l~~~~~lIiDE~h~l~-~~~---------------~~~~ 199 (419)
|+.+.. .+++|+|+||+++ .+++..+ ...++++.++|+||||.++ +.+ +...
T Consensus 151 GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~ 230 (853)
T 2fsf_A 151 PGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKR 230 (853)
T ss_dssp TTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------
T ss_pred CCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHH
Confidence 775432 2489999999999 6666544 2467899999999999887 433 3345
Q ss_pred HHHHHHhcCC--------------------CCcEE------------------------EEeeecCChHH-H-----HHH
Q psy2764 200 WEEVLILLPK--------------------EVCIV------------------------MLSATVPNTLE-F-----ADW 229 (419)
Q Consensus 200 ~~~i~~~~~~--------------------~~~~l------------------------~~SAT~~~~~~-~-----~~~ 229 (419)
+..++..+++ ..|++ ++|||.+.... + +..
T Consensus 231 i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~ 310 (853)
T 2fsf_A 231 VNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHA 310 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHH
Confidence 6666666653 45543 78998653211 1 111
Q ss_pred hcC-cC------CccEEEEecCC-------------CC-----------ccceEEEEe---------------CCccccc
Q psy2764 230 VGN-TK------KTKVYVVSTLK-------------RP-----------VPLKHFLYV---------------GPVLEKN 263 (419)
Q Consensus 230 l~~-~~------~~~~~~~~~~~-------------~~-----------~~~~~~~~~---------------~~~~~~~ 263 (419)
+.. .. +..+.+-.... .+ .......+. .......
T Consensus 311 l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~ 390 (853)
T 2fsf_A 311 LFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEA 390 (853)
T ss_dssp ----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCH
T ss_pred HhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHH
Confidence 110 00 00000000000 00 000000000 0000000
Q ss_pred c--------eeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHHHH--cCCCCEEEE
Q psy2764 264 Q--------LFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYLRK--SQNLPVVLF 333 (419)
Q Consensus 264 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~LIF 333 (419)
. .+..+.++....- ....+........++.++.+.+.. ..+.++|||
T Consensus 391 ~ef~~iY~l~vv~IPtn~p~~R-----------------------~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVf 447 (853)
T 2fsf_A 391 FEFSSIYKLDTVVVPTNRPMIR-----------------------KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVG 447 (853)
T ss_dssp HHHHHHHCCEEEECCCSSCCCC-----------------------EECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHhCCcEEEcCCCCCcee-----------------------ecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 0000100000000 000001112334566777777743 356789999
Q ss_pred EcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 334 TLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 334 ~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
|+|++.++.+++.|...|+.....++.. ..++..+.++|+.| .|+||||+++||+||+.+
T Consensus 448 t~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G------~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA------AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp ESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT------CEEEEESCCSSCSCCCTT
T ss_pred ECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC------eEEEecccccCCcCccCC
Confidence 9999999999999999999988866654 44555566788866 369999999999999874
No 63
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.7e-29 Score=253.51 Aligned_cols=312 Identities=14% Similarity=0.053 Sum_probs=195.5
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
++.|+++|..+++.++.|+ |+.++||+|||++|.+++....-.+..++||+||++||.|.++.+..++.. ++++
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3456999999999999987 999999999999988887643345778999999999999999999887654 5667
Q ss_pred eccceec-----CCCcEEEEcHHHH-HHHHhcC------CCCCCCccEEEEeCCcccC-CC---------------cchH
Q psy2764 147 TGDFQIN-----TTASCLVMTTEIL-RSMLYRG------SDVLRDLEYVIFDEVHYIN-DS---------------ERGH 198 (419)
Q Consensus 147 ~g~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~------~~~l~~~~~lIiDE~h~l~-~~---------------~~~~ 198 (419)
.|+.+.. ..++|+|+||++| .+++..+ ...++.+.++||||||.++ +. ++..
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHH
Confidence 7765432 2489999999998 6666543 3567889999999999876 43 3556
Q ss_pred HHHHHHHhcC---------CCCcEE-----------------EEeeecCChHH-H-----HHHhcCcCCccEEEEecCCC
Q psy2764 199 VWEEVLILLP---------KEVCIV-----------------MLSATVPNTLE-F-----ADWVGNTKKTKVYVVSTLKR 246 (419)
Q Consensus 199 ~~~~i~~~~~---------~~~~~l-----------------~~SAT~~~~~~-~-----~~~l~~~~~~~~~~~~~~~~ 246 (419)
.+..++..++ +..|++ ++|||.+.... + +..+...... +++...
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d--YiV~dg-- 342 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD--YIVRDG-- 342 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT--EEECSS--
T ss_pred HHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc--eeeecC--
Confidence 7888888887 678888 88999875322 1 2223221111 111100
Q ss_pred CccceEEEEe-CCcccccce--------------eeecccc----CcccchhhhHHH------------HHHHHhhhhcC
Q psy2764 247 PVPLKHFLYV-GPVLEKNQL--------------FLIREAE----GEFLTRGYLAAK------------EVKCRKQLEKG 295 (419)
Q Consensus 247 ~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~ 295 (419)
...++. .....-..+ ...+... .....++|.... ...+.. ..+.
T Consensus 343 ----~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~-~iY~ 417 (922)
T 1nkt_A 343 ----EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH-EIYK 417 (922)
T ss_dssp ----CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH-HHHC
T ss_pred ----ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH-HHhC
Confidence 000000 000000000 0000000 000001111000 000000 0000
Q ss_pred ---CCCCC------CCCCCCCCCcchhHHHHHHHHHHH--cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HH
Q psy2764 296 ---GSGGG------KLNGPFTRGAEKNLFISFLNYLRK--SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HR 363 (419)
Q Consensus 296 ---~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~ 363 (419)
..+.. ....+........++.++.+.+.. ..+.++||||+|++.++.+++.|...|+.....++.. ..
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 00000 000111223345677788777743 3566899999999999999999999999988866654 34
Q ss_pred HHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 364 FFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 364 ~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
++.-+.+.|+.| .|+|||++++||+||+.+
T Consensus 498 Ea~iia~agr~G------~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 498 EATIIAVAGRRG------GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp HHHHHHTTTSTT------CEEEEETTCSTTCCCCTT
T ss_pred HHHHHHhcCCCC------eEEEecchhhcCccccCC
Confidence 444556777765 469999999999999976
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=1.6e-29 Score=244.91 Aligned_cols=250 Identities=16% Similarity=0.138 Sum_probs=170.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHH-HHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce--ecCCCcEEEEcH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIA-LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ--INTTASCLVMTT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~-~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~--~~~~~~Iiv~Tp 163 (419)
+|++++++||||||||++|+.++. .+...+.+++|++||++|+.|+++.+.. ..++..+|... ...+..+.+.|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCccccCCCCceEEEEch
Confidence 478999999999999999877665 5566788999999999999999988862 23555555422 223456778898
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeeecCChHHHHHHhcCcCCccEEEEe
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVS 242 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~~~~~ 242 (419)
+.+...+.. ...+.+++++|+||+|++ +..+......+.... +.++|+++||||+++..+ .+.
T Consensus 79 ~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~--~~~------------ 142 (431)
T 2v6i_A 79 STFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTE--AFP------------ 142 (431)
T ss_dssp HHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC--SSC------------
T ss_pred HHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh--hhc------------
Confidence 888766655 455889999999999997 323333344444332 468999999999986422 000
Q ss_pred cCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHHHHH
Q psy2764 243 TLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFLNYL 322 (419)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 322 (419)
....++.......... ... .+.+.+
T Consensus 143 --~~~~~i~~~~~~~~~~-------------------------------------------------~~~----~~~~~l 167 (431)
T 2v6i_A 143 --PSNSPIIDEETRIPDK-------------------------------------------------AWN----SGYEWI 167 (431)
T ss_dssp --CCSSCCEEEECCCCSS-------------------------------------------------CCS----SCCHHH
T ss_pred --CCCCceeeccccCCHH-------------------------------------------------HHH----HHHHHH
Confidence 0011111100000000 000 111222
Q ss_pred HHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCC--
Q psy2764 323 RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSG-- 400 (419)
Q Consensus 323 ~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~-- 400 (419)
.. ..+++||||++++.|+.+++.|+..++.....|+. .|.+++++|++|+. +|||||+++++|||+|...
T Consensus 168 ~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~---~r~~~~~~f~~g~~----~vLVaT~v~e~GiDip~~~VI 239 (431)
T 2v6i_A 168 TE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK---TFESEYPKCKSEKW----DFVITTDISEMGANFKADRVI 239 (431)
T ss_dssp HS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT---THHHHTTHHHHSCC----SEEEECGGGGTSCCCCCSEEE
T ss_pred Hc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc---cHHHHHHhhcCCCC----eEEEECchHHcCcccCCcEEE
Confidence 22 35579999999999999999999988887776664 57789999999998 9999999999999999433
Q ss_pred --------------------CChhhHHHHHHHHhcCc
Q psy2764 401 --------------------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 401 --------------------l~~~~r~~ie~~f~~g~ 417 (419)
.|.....+++...+.|+
T Consensus 240 ~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 240 DPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp ECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ecCccccceecccceeecccccCCHHHHHHhhhccCC
Confidence 23466788888887775
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=1.9e-29 Score=244.83 Aligned_cols=250 Identities=16% Similarity=0.115 Sum_probs=159.1
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce--ecCCCcEEEE
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ--INTTASCLVM 161 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~--~~~~~~Iiv~ 161 (419)
+.+|++++++||||||||++|+.++.. +...+.+++|++||++|+.|+++.+..+. ++...+... ...+.-+-..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~--v~~~~~~~~~v~Tp~~l~~~l 82 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD--VKFHTQAFSAHGSGREVIDAM 82 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEEESSCCCCCCCSSCCEEEE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCC--eEEecccceeccCCccceeee
Confidence 468899999999999999998776654 45567899999999999999999987542 222222211 0111122233
Q ss_pred cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc-CCCCcEEEEeeecCChHH-HHHHhcCcCCccEE
Q psy2764 162 TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL-PKEVCIVMLSATVPNTLE-FADWVGNTKKTKVY 239 (419)
Q Consensus 162 Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~-~~~~l~~~~~~~~~ 239 (419)
+.+.+...+. ....+.+++++|+||+|++ +..+...+..+.... +.++|+++||||++.... +..
T Consensus 83 ~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----------- 149 (440)
T 1yks_A 83 CHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH----------- 149 (440)
T ss_dssp EHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC-----------
T ss_pred cccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh-----------
Confidence 3344433332 3345789999999999998 434433333333333 367999999999975432 111
Q ss_pred EEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHHH
Q psy2764 240 VVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISFL 319 (419)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (419)
.+.++........... ....+..+
T Consensus 150 ------~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~l- 173 (440)
T 1yks_A 150 ------SNGEIEDVQTDIPSEP-------------------------------------------------WNTGHDWI- 173 (440)
T ss_dssp ------CSSCEEEEECCCCSSC-------------------------------------------------CSSSCHHH-
T ss_pred ------cCCCeeEeeeccChHH-------------------------------------------------HHHHHHHH-
Confidence 0111111100000000 00001122
Q ss_pred HHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccC
Q psy2764 320 NYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHS 399 (419)
Q Consensus 320 ~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~ 399 (419)
.. .++++||||++++.|+.+++.|...++.....|+ ++|.+++++|++|+. +|||||+++++|||+| +
T Consensus 174 ---~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg---~~R~~~~~~F~~g~~----~vLVaT~v~e~GiDip-v 241 (440)
T 1yks_A 174 ---LA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR---KTFEREYPTIKQKKP----DFILATDIAEMGANLC-V 241 (440)
T ss_dssp ---HH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS---SSCC--------CCC----SEEEESSSTTCCTTCC-C
T ss_pred ---Hh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc---hhHHHHHhhhcCCCc----eEEEECChhheeeccC-c
Confidence 22 3567999999999999999999999888777666 468899999999999 9999999999999999 7
Q ss_pred CC-------------------------ChhhHHHHHHHHhcCc
Q psy2764 400 GI-------------------------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 400 ~l-------------------------~~~~r~~ie~~f~~g~ 417 (419)
+. |.....+++...+.|+
T Consensus 242 ~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 242 ERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp SEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred eEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 65 4566688888888775
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=2.3e-29 Score=245.77 Aligned_cols=256 Identities=15% Similarity=0.111 Sum_probs=167.7
Q ss_pred HHHHhcCCcEEEEcCCCCChhHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce--ecCCCcE
Q psy2764 82 IIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ--INTTASC 158 (419)
Q Consensus 82 i~~~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~--~~~~~~I 158 (419)
...+.++++++++||||||||++|++++.. +...+.++||++||++|+.|+++.+... .++...+... ...+..+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~~t~~~~i 92 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQREHQGNEIV 92 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------CCCSE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccCCCCCcEE
Confidence 334578899999999999999997777653 4457789999999999999999998732 1222122111 1234567
Q ss_pred EEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh-cCCCCcEEEEeeecCChHHHHHHhcCcCCcc
Q psy2764 159 LVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL-LPKEVCIVMLSATVPNTLEFADWVGNTKKTK 237 (419)
Q Consensus 159 iv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~-~~~~~~~l~~SAT~~~~~~~~~~l~~~~~~~ 237 (419)
.++|.+.+...+... ..+.++++|||||||.+.. .....+..+... ..++.|+++||||++.... .+..
T Consensus 93 ~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~-~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~--~~~~------ 162 (459)
T 2z83_A 93 DVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDP-ASIAARGYIATKVELGEAAAIFMTATPPGTTD--PFPD------ 162 (459)
T ss_dssp EEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--SSCC------
T ss_pred EEEchHHHHHHhhcc-ccccCCcEEEEECCccCCc-hhhHHHHHHHHHhccCCccEEEEEcCCCcchh--hhcc------
Confidence 788988887666544 4578999999999997521 111111112111 2358999999999985432 0000
Q ss_pred EEEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHH
Q psy2764 238 VYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFIS 317 (419)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (419)
...++.......... . + . .
T Consensus 163 --------~~~pi~~~~~~~~~~----~--------------~-------------------------------~----~ 181 (459)
T 2z83_A 163 --------SNAPIHDLQDEIPDR----A--------------W-------------------------------S----S 181 (459)
T ss_dssp --------CSSCEEEEECCCCSS----C--------------C-------------------------------S----S
T ss_pred --------CCCCeEEecccCCcc----h--------------h-------------------------------H----H
Confidence 011111100000000 0 0 0 0
Q ss_pred HHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhc
Q psy2764 318 FLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVH 397 (419)
Q Consensus 318 l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~ 397 (419)
+.+.+.. ..+++||||++++.|+.+++.|...|+.....++. +|.+++++|++|+. +|||||+++++|||+|
T Consensus 182 ~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~---~R~~~~~~f~~g~~----~iLVaT~v~~~GiDip 253 (459)
T 2z83_A 182 GYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK---SYDTEYPKCKNGDW----DFVITTDISEMGANFG 253 (459)
T ss_dssp CCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT---CCCCCGGGSSSCCC----SEEEESSCC---CCCS
T ss_pred HHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH---HHHHHHhhccCCCc----eEEEECChHHhCeecC
Confidence 0111222 35679999999999999999999998887766553 57789999999998 9999999999999999
Q ss_pred c-------------------------CCCChhhHHHHHHHHhcCcC
Q psy2764 398 H-------------------------SGILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 398 ~-------------------------~~l~~~~r~~ie~~f~~g~i 418 (419)
+ -+.|.....+++...+.|+-
T Consensus 254 ~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 254 ASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRN 299 (459)
T ss_dssp CSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCC
T ss_pred CCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCC
Confidence 7 33666678899999888763
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=6.5e-27 Score=235.75 Aligned_cols=248 Identities=18% Similarity=0.241 Sum_probs=181.3
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecC-----CCcEE
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINT-----TASCL 159 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~-----~~~Ii 159 (419)
.+++++++++||||||||+.++..+ .. ..+.+|++|||+||.|+++++.+....+++++|+..... ..+++
T Consensus 152 ~l~rk~vlv~apTGSGKT~~al~~l---~~-~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il 227 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYHAIQKY---FS-AKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHV 227 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH---HH-SSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEE
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHH---Hh-cCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCccccee
Confidence 3588999999999999997322222 22 245699999999999999999998778899999876532 37899
Q ss_pred EEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC-CCCcEEEEeeecCChHHHHHHhcCcCCccE
Q psy2764 160 VMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP-KEVCIVMLSATVPNTLEFADWVGNTKKTKV 238 (419)
Q Consensus 160 v~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~l~~~~~~~~ 238 (419)
++|++.+. ....++++||||||++.+.+++..+..++..++ ...+++++|||.+....+..+.+. .+
T Consensus 228 ~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~----~~ 295 (677)
T 3rc3_A 228 SCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGE----EV 295 (677)
T ss_dssp EEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTC----CE
T ss_pred EecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCC----ce
Confidence 99986552 356789999999999998889999998888887 789999999996443344444332 11
Q ss_pred EEEecCCCCccceEEEEeCCcccccceeeeccccCcccchhhhHHHHHHHHhhhhcCCCCCCCCCCCCCCCcchhHHHHH
Q psy2764 239 YVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFTRGAEKNLFISF 318 (419)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (419)
.+ ....+..+.... ...+. .
T Consensus 296 ~v-~~~~r~~~l~~~---------~~~l~-------------------------------------------------~- 315 (677)
T 3rc3_A 296 EV-RDYKRLTPISVL---------DHALE-------------------------------------------------S- 315 (677)
T ss_dssp EE-EECCCSSCEEEC---------SSCCC-------------------------------------------------S-
T ss_pred EE-EEeeecchHHHH---------HHHHH-------------------------------------------------H-
Confidence 11 111222221110 00000 0
Q ss_pred HHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCC--cCCCCchhhHHHHHHHhhhhh
Q psy2764 319 LNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQN--EDDRALPQVKRLEQLLKNGIG 395 (419)
Q Consensus 319 ~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~--g~~~~~~~vlv~t~~l~~GID 395 (419)
+ .......+|||+|++.++.+++.|...++.....|+.+ .++|.++++.|++ |.. +|||||+++++|||
T Consensus 316 ---l-~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~----~VLVATdi~e~GlD 387 (677)
T 3rc3_A 316 ---L-DNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPC----KILVATDAIGMGLN 387 (677)
T ss_dssp ---G-GGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSC----CEEEECGGGGSSCC
T ss_pred ---H-HhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCe----EEEEeCcHHHCCcC
Confidence 0 01123369999999999999999999998888877777 7889999999998 777 99999999999999
Q ss_pred hccCC------C--------------ChhhHHHHHHHHhcCc
Q psy2764 396 VHHSG------I--------------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 396 i~~~~------l--------------~~~~r~~ie~~f~~g~ 417 (419)
+ +++ + +.....+++...|.|+
T Consensus 388 i-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 388 L-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp C-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTC
T ss_pred c-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCC
Confidence 8 555 3 3345677888777775
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=2.5e-25 Score=234.79 Aligned_cols=342 Identities=13% Similarity=0.049 Sum_probs=200.4
Q ss_pred CCCccHHHHHHHHHHhc--CCcEEEEcCCCCChhHHHHHHHHHHhcCC--CeEEEEcccHHHHHHHHHHHHHhccc-cce
Q psy2764 71 PFELDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQNHK--TRTIYTSPIKALSNQKYRDFRETFQD-VGL 145 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~--~~~~iv~apTGsGKT~~~~~~i~~~~~~~--~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~ 145 (419)
.++|+|+|.+++..+.. +.+++++++||+|||++++.++......+ .++|||+|+ +|+.|+...+.+.++. +.+
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEE
Confidence 36699999999988754 56899999999999999877776655444 489999999 9999999999776643 555
Q ss_pred Eeccc---------eecCCCcEEEEcHHHHHHHHhc-CCCCCCCccEEEEeCCcccCCCcch--HHHHHHHHhcCCCCcE
Q psy2764 146 VTGDF---------QINTTASCLVMTTEILRSMLYR-GSDVLRDLEYVIFDEVHYINDSERG--HVWEEVLILLPKEVCI 213 (419)
Q Consensus 146 ~~g~~---------~~~~~~~Iiv~Tp~~l~~~~~~-~~~~l~~~~~lIiDE~h~l~~~~~~--~~~~~i~~~~~~~~~~ 213 (419)
+.|+. ......+|+|+|++.+...... ......++++||+||||++...... ..+..+........++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~ 309 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGV 309 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSE
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcE
Confidence 55433 1223579999999988532111 0122447899999999999654322 2233333333356679
Q ss_pred EEEeeecCC-h-HH---HHHHhcCcCCccEEEE-------e-------cCC-----CCcc---ceEEE---------EeC
Q psy2764 214 VMLSATVPN-T-LE---FADWVGNTKKTKVYVV-------S-------TLK-----RPVP---LKHFL---------YVG 257 (419)
Q Consensus 214 l~~SAT~~~-~-~~---~~~~l~~~~~~~~~~~-------~-------~~~-----~~~~---~~~~~---------~~~ 257 (419)
+++|||+-+ . .+ +..++....-.....+ . ... .+.. +...+ ...
T Consensus 310 L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~ 389 (968)
T 3dmq_A 310 LLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAA 389 (968)
T ss_dssp EESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGT
T ss_pred EEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcc
Confidence 999999853 2 12 2233222100000000 0 000 0000 00000 000
Q ss_pred Ccccc------------------cceeeeccc---cCcc-----------cchhhhHHHHHHHHhh-----------hhc
Q psy2764 258 PVLEK------------------NQLFLIREA---EGEF-----------LTRGYLAAKEVKCRKQ-----------LEK 294 (419)
Q Consensus 258 ~~~~~------------------~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~~~~-----------~~~ 294 (419)
..... ....+.... ...+ ....+...+....... ...
T Consensus 390 ~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 469 (968)
T 3dmq_A 390 NSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLY 469 (968)
T ss_dssp CCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHC
T ss_pred cchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcC
Confidence 00000 000000000 0000 0001111111000000 000
Q ss_pred CCCCCCC-CCCCCCCCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhc-CCCCChhHHHHH-HHHHHHHHHh
Q psy2764 295 GGSGGGK-LNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS-MDFSTATEKSKI-HRFFQDSIRN 371 (419)
Q Consensus 295 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~-~~~~~~~~~~~~-~~~r~~~l~~ 371 (419)
....... ............+...+.+++....+.++||||+++..++.++..|.. .|+.....++.+ ..+|.+++++
T Consensus 470 pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~ 549 (968)
T 3dmq_A 470 PERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAW 549 (968)
T ss_dssp SGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHH
T ss_pred hHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 0000000 000112223445678888888887788999999999999999999995 588877766666 7889999999
Q ss_pred cCCcC--CCCchhhHHHHHHHhhhhhhccCCC------ChhhHHHHHHHHhcCc
Q psy2764 372 LQNED--DRALPQVKRLEQLLKNGIGVHHSGI------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 372 f~~g~--~~~~~~vlv~t~~l~~GIDi~~~~l------~~~~r~~ie~~f~~g~ 417 (419)
|++|+ . ++||||+++++|||+|+++. +.....+++...|-|+
T Consensus 550 F~~g~~~~----~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 550 FAEEDTGA----QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR 599 (968)
T ss_dssp HHSTTSSC----EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSC
T ss_pred HhCCCCcc----cEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcccc
Confidence 99997 6 89999999999999997764 5556667777666654
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.92 E-value=1e-24 Score=228.74 Aligned_cols=308 Identities=15% Similarity=0.140 Sum_probs=187.9
Q ss_pred CccHHHHHHHHHHhc--------------CCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHH
Q psy2764 73 ELDVFQKQAIIKLEE--------------HNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~--------------~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~ 136 (419)
.|+|+|.+|++.+.. +++++++++||||||++++.++..+.. ...++|||+|+++|+.|+.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 379999999998753 368999999999999987444433322 3469999999999999999999
Q ss_pred HHhccccceEeccce-------e-cCCCcEEEEcHHHHHHHHhcCC--CCCCCccEEEEeCCcccCCCcchHHHHHHHHh
Q psy2764 137 RETFQDVGLVTGDFQ-------I-NTTASCLVMTTEILRSMLYRGS--DVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206 (419)
Q Consensus 137 ~~~~~~~~~~~g~~~-------~-~~~~~Iiv~Tp~~l~~~~~~~~--~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~ 206 (419)
.++.... ..++.+ . ....+|+|+||+++...+.... ..+....+||+||||++. ++..+..+...
T Consensus 351 ~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~---~~~~~~~I~~~ 425 (1038)
T 2w00_A 351 QRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ---FGEAQKNLKKK 425 (1038)
T ss_dssp HTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH---HHHHHHHHHHH
T ss_pred HHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc---chHHHHHHHHh
Confidence 9876531 112111 1 2468999999999998765432 235577899999999864 33445666677
Q ss_pred cCCCCcEEEEeeecCChH------HHHHHhcCcCCccEEEEec-----CCCCccceEEEEeCCcccccceeeeccccCcc
Q psy2764 207 LPKEVCIVMLSATVPNTL------EFADWVGNTKKTKVYVVST-----LKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 275 (419)
Q Consensus 207 ~~~~~~~l~~SAT~~~~~------~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (419)
++ +.++++||||+.... ....+++.. ++.+.- ...-.|....+..... . +...... .
T Consensus 426 ~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~----i~~Y~l~~AI~dg~l~p~~v~y~~v~~-~----~~~~~~e--~ 493 (1038)
T 2w00_A 426 FK-RYYQFGFTGTPIFPENALGSETTASVFGRE----LHSYVITDAIRDEKVLKFKVDYNDVRP-Q----FKSLETE--T 493 (1038)
T ss_dssp CS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE----EEEECHHHHHHHTSSCCEEEEECCCCG-G----GHHHHTC--C
T ss_pred CC-cccEEEEeCCccccccchhhhHHHHHhCCe----eEeecHHHHHhCCCcCCeEEEEEeccc-h----hhhcccc--c
Confidence 76 589999999997543 344555541 111110 0001122111111000 0 0000000 0
Q ss_pred cchhhhHHHHHHHHhhhhcCCCCCCCCCCCCC-CCcchhHHHHHHHHHHHc--------CCCCEEEEEcchhhHHHHHHH
Q psy2764 276 LTRGYLAAKEVKCRKQLEKGGSGGGKLNGPFT-RGAEKNLFISFLNYLRKS--------QNLPVVLFTLSRKRCDQNAAN 346 (419)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~--------~~~~~LIF~~t~~~~~~l~~~ 346 (419)
....+ . . . . ...-+. +.....+...+++.+... .+.++||||+|+.+|..+++.
T Consensus 494 d~~~~----~----~-i-~-------~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~ 556 (1038)
T 2w00_A 494 DEKKL----S----A-A-E-------NQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYAT 556 (1038)
T ss_dssp CHHHH----H----H-T-C-------STTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHH
T ss_pred cHHHH----H----H-H-H-------HHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHH
Confidence 00000 0 0 0 0 000000 011122233444444332 335799999999999999998
Q ss_pred hhcCC------------CCChh-HH--------------------------------------------------HHHHH
Q psy2764 347 LLSMD------------FSTAT-EK--------------------------------------------------SKIHR 363 (419)
Q Consensus 347 L~~~~------------~~~~~-~~--------------------------------------------------~~~~~ 363 (419)
|...+ +.+.. .+ .....
T Consensus 557 l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~ 636 (1038)
T 2w00_A 557 FKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQN 636 (1038)
T ss_dssp HHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHH
T ss_pred HHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhH
Confidence 86543 21110 00 01123
Q ss_pred HHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC-----ChhhHHHHHHHHhcCcC
Q psy2764 364 FFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI-----LPILKEIVEMLFQKGLV 418 (419)
Q Consensus 364 ~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l-----~~~~r~~ie~~f~~g~i 418 (419)
.|.+++++|++|+. ++||+|+++.+|+|+|.+.. |.....+++..-|-|++
T Consensus 637 ~R~~i~~~Fk~g~i----~ILIvvd~lltGfDiP~l~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 637 YYRDLAQRVKNQDI----DLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHHHHTTSS----SEEEESSTTSSSCCCTTEEEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCC----eEEEEcchHHhCcCcccccEEEEccCCCccceeehhhccCcC
Confidence 58899999999998 99999999999999997653 45556778777776653
No 70
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=187.83 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=107.2
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh------cCCCeEEEEcccHHHHHH-HHHHHHHhccc--
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ------NHKTRTIYTSPIKALSNQ-KYRDFRETFQD-- 142 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~------~~~~~~lii~Pt~~L~~q-~~~~~~~~~~~-- 142 (419)
++|+++|.++++.+..++++++.+|||+|||+++++++.... ..+.++||++|+++|+.| +.+.+.++...
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~ 111 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWY 111 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTS
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCc
Confidence 458999999999999999999999999999999887766432 236799999999999999 77778777543
Q ss_pred -cceEeccceecC-------CCcEEEEcHHHHHHHHhcCC------CCCCCccEEEEeCCcccCCCc-chHHHHHHHHhc
Q psy2764 143 -VGLVTGDFQINT-------TASCLVMTTEILRSMLYRGS------DVLRDLEYVIFDEVHYINDSE-RGHVWEEVLILL 207 (419)
Q Consensus 143 -~~~~~g~~~~~~-------~~~Iiv~Tp~~l~~~~~~~~------~~l~~~~~lIiDE~h~l~~~~-~~~~~~~i~~~~ 207 (419)
+..+.|+..... .++|+|+||+++...+.... ..+.++++||+||||++.+.+ +...+..++...
T Consensus 112 ~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 191 (216)
T 3b6e_A 112 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 191 (216)
T ss_dssp CEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHH
T ss_pred eEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHh
Confidence 556666654332 38999999999998887643 457789999999999997654 333333333221
Q ss_pred -------------CCCCcEEEEeee
Q psy2764 208 -------------PKEVCIVMLSAT 219 (419)
Q Consensus 208 -------------~~~~~~l~~SAT 219 (419)
.+.++++++|||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 192 LKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cccccccccccCCCCcceEEEeecC
Confidence 157899999998
No 71
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=2e-23 Score=191.10 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=117.5
Q ss_pred CCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
++|+++|.++++.+..+.+.++++|||+|||++++.++.... +...++||++||++|+.|+.+.+.++... ++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 458999999999988888899999999999999877665443 34459999999999999999999998653 3445
Q ss_pred eccceec----CCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 147 TGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 147 ~g~~~~~----~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
.|+.... ...+|+|+||+++... ....+.+++++|+||||++.+ ..+..++..+....+++++|||+++
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred eCCCcchhhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 5554433 5689999999987532 234567889999999999863 3677777887778999999999987
Q ss_pred hHH
Q psy2764 223 TLE 225 (419)
Q Consensus 223 ~~~ 225 (419)
..+
T Consensus 265 ~~~ 267 (282)
T 1rif_A 265 GKA 267 (282)
T ss_dssp TST
T ss_pred cch
Confidence 653
No 72
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=180.51 Aligned_cols=154 Identities=22% Similarity=0.246 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHH-HhcC----CCeEEEEcccHHHHHHHHHHHHHhccc-cceEe
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL-SQNH----KTRTIYTSPIKALSNQKYRDFRETFQD-VGLVT 147 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~-~~~~----~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~~~ 147 (419)
++++|.++++.+..|++++++||||||||+++..++.. .... +.++++++|+++|+.|+.+.+...... ++...
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 69999999999999999999999999999876555442 2222 348999999999999999999876553 33322
Q ss_pred c----ccee--cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCccc-CCCcch-HHHHHHHHhcCCCCcEEEEeee
Q psy2764 148 G----DFQI--NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYI-NDSERG-HVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 148 g----~~~~--~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l-~~~~~~-~~~~~i~~~~~~~~~~l~~SAT 219 (419)
| .... ...++|+|+||+++.+++.. .+.+++++|+||||.+ .+.++. ..++.++... ++.|+++||||
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT 217 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSAT 217 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecC
Confidence 2 1111 24588999999999988866 4789999999999975 443443 3455555554 47999999999
Q ss_pred cCChHHHHHHhcC
Q psy2764 220 VPNTLEFADWVGN 232 (419)
Q Consensus 220 ~~~~~~~~~~l~~ 232 (419)
++... +++|++.
T Consensus 218 ~~~~~-~~~~~~~ 229 (235)
T 3llm_A 218 IDTSM-FCEYFFN 229 (235)
T ss_dssp SCCHH-HHHHTTS
T ss_pred CCHHH-HHHHcCC
Confidence 98776 8888876
No 73
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=2.2e-23 Score=206.53 Aligned_cols=302 Identities=11% Similarity=0.062 Sum_probs=179.7
Q ss_pred CccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccc--cc
Q psy2764 73 ELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQD--VG 144 (419)
Q Consensus 73 ~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~--~~ 144 (419)
+|+|+|.++++.+ ..+.++++..+||+|||++++..+..+.. ...++|||+| .+|+.||.+.+.++++. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~ 115 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFA 115 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEE
Confidence 4799999999865 46789999999999999987666655433 4478999999 56999999999999865 44
Q ss_pred eEecccee--cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 145 LVTGDFQI--NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 145 ~~~g~~~~--~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
+++|+... ....+|+|+|++.+..... .....+++||+||||++.+.. ......+..++ ..+.+++|||+..
T Consensus 116 ~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~LTaTP~~ 189 (500)
T 1z63_A 116 VFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIALTGTPIE 189 (500)
T ss_dssp ECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEECSSCST
T ss_pred EEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEEEecCCCC
Confidence 55554422 2357999999999864332 223467899999999986543 22334444454 4678999999853
Q ss_pred h--HH---HHHHhcCcCCc-----------------------------cEEEEecC-------CCCccceEEEEeCCccc
Q psy2764 223 T--LE---FADWVGNTKKT-----------------------------KVYVVSTL-------KRPVPLKHFLYVGPVLE 261 (419)
Q Consensus 223 ~--~~---~~~~l~~~~~~-----------------------------~~~~~~~~-------~~~~~~~~~~~~~~~~~ 261 (419)
. .+ +..++....-. .+...... .-|......+.......
T Consensus 190 n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~ 269 (500)
T 1z63_A 190 NKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPE 269 (500)
T ss_dssp TCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHH
T ss_pred CCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHH
Confidence 2 22 22222210000 00000000 00111111111000000
Q ss_pred ccceeeeccccCcccchhhhHHHHHH----------------------HHhhhhcCCCCCCCCCCCCCCCcchhHHHHHH
Q psy2764 262 KNQLFLIREAEGEFLTRGYLAAKEVK----------------------CRKQLEKGGSGGGKLNGPFTRGAEKNLFISFL 319 (419)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (419)
....|....... ........... ...........+...+.
T Consensus 270 --------------~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~----~~~~~~~~~s~K~~~l~ 331 (500)
T 1z63_A 270 --------------QAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALL----KGGEQSVRRSGKMIRTM 331 (500)
T ss_dssp --------------HHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHH----HCSCCCSTTCHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHh----cCccchhhcchhHHHHH
Confidence 000010000000 00000000000 00000112234455666
Q ss_pred HHHHH--cCCCCEEEEEcchhhHHHHHHHhhcC-CCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhh
Q psy2764 320 NYLRK--SQNLPVVLFTLSRKRCDQNAANLLSM-DFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIG 395 (419)
Q Consensus 320 ~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~~~-~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GID 395 (419)
+.+.. ..+.++||||+++..++.++..|... |+.....++.+ ..+|.+++++|++|... ..+|++|+++++|+|
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~--~vil~st~~~~~Gln 409 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV--KFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTC--CCCEEECCCC-CCCC
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCC--CEEEEecccccCCCc
Confidence 66644 35678999999999999999999875 77776655555 78899999999987321 037889999999999
Q ss_pred hccCCC
Q psy2764 396 VHHSGI 401 (419)
Q Consensus 396 i~~~~l 401 (419)
++.++.
T Consensus 410 l~~~~~ 415 (500)
T 1z63_A 410 LTSANR 415 (500)
T ss_dssp CTTCSE
T ss_pred hhhCCE
Confidence 997764
No 74
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.88 E-value=1e-21 Score=174.51 Aligned_cols=146 Identities=21% Similarity=0.149 Sum_probs=113.7
Q ss_pred cccCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc-cce
Q psy2764 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VGL 145 (419)
Q Consensus 67 ~~~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-~~~ 145 (419)
.+..+++|+++|.+++..+..++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++... ++.
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~ 163 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGE 163 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEE
T ss_pred cccCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEE
Confidence 4445567999999999999988999999999999998876665543 678999999999999999999995445 667
Q ss_pred EeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCChHH
Q psy2764 146 VTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225 (419)
Q Consensus 146 ~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 225 (419)
+.|+.. ...+|+|+|++.+...... ...++++||+||||++.+..+ ..++..++ ..+++++|||+++.+.
T Consensus 164 ~~g~~~--~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 164 FSGRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APFRLGLTATFEREDG 233 (237)
T ss_dssp ESSSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSEEEEEEESCC----
T ss_pred EeCCCC--CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-CCEEEEEecCCCCCCC
Confidence 777654 4679999999998765532 234689999999999977554 34555554 6789999999987654
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=3.8e-21 Score=192.68 Aligned_cols=120 Identities=23% Similarity=0.183 Sum_probs=99.1
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----cceE
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----VGLV 146 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~~~~ 146 (419)
+++|+++|..+++.+++|+ ++.++||+|||++|.+++....-.+.+++|++||++||.|.++.+..++.. ++++
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i 154 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVI 154 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4457999999999999998 999999999999988887544445788999999999999999999988765 5567
Q ss_pred eccceec-----CCCcEEEEcHHHH-HHHHhcCC------CCCC---CccEEEEeCCcccC
Q psy2764 147 TGDFQIN-----TTASCLVMTTEIL-RSMLYRGS------DVLR---DLEYVIFDEVHYIN 192 (419)
Q Consensus 147 ~g~~~~~-----~~~~Iiv~Tp~~l-~~~~~~~~------~~l~---~~~~lIiDE~h~l~ 192 (419)
+|+.+.. ..++|+|+||+++ .+++..+. ..++ .+.++|+||+|.++
T Consensus 155 ~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 155 QHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 7765432 2589999999999 67776652 4567 89999999999765
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-20 Score=194.33 Aligned_cols=319 Identities=14% Similarity=0.069 Sum_probs=182.0
Q ss_pred CCccHHHHHHHHHH----hcCCcEEEEcCCCCChhHHHHHHHHHH---hcCCCeEEEEcccHHHHHHHHHHHHHhccc--
Q psy2764 72 FELDVFQKQAIIKL----EEHNHVFVTAHTSAGKTVIAEYAIALS---QNHKTRTIYTSPIKALSNQKYRDFRETFQD-- 142 (419)
Q Consensus 72 ~~~~~~Q~~ai~~~----~~~~~~iv~apTGsGKT~~~~~~i~~~---~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~-- 142 (419)
.+|+|||.+++..+ ..+.+.|+..+||.|||+.++..+..+ ......+|||+| .+|+.|+.+.+.++++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 46899999999765 388999999999999998876665533 345677999999 78999999999999865
Q ss_pred cceEeccce-------------------ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHH
Q psy2764 143 VGLVTGDFQ-------------------INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203 (419)
Q Consensus 143 ~~~~~g~~~-------------------~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i 203 (419)
+.+++|+.. .....+|+|+|++.+...... .....+++||+||||++-+.. ......
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~ 389 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYES 389 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHH
Confidence 344455321 123478999999998753321 112257899999999985422 233344
Q ss_pred HHhcCCCCcEEEEeeecC-C-hHH---HHHHhcCcCCccEE--EEecC---------------------------C--CC
Q psy2764 204 LILLPKEVCIVMLSATVP-N-TLE---FADWVGNTKKTKVY--VVSTL---------------------------K--RP 247 (419)
Q Consensus 204 ~~~~~~~~~~l~~SAT~~-~-~~~---~~~~l~~~~~~~~~--~~~~~---------------------------~--~~ 247 (419)
+..+. ....+++|||+- | ..+ +..++....-.... .+... . -|
T Consensus 390 l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP 468 (800)
T 3mwy_W 390 LNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLP 468 (800)
T ss_dssp HTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSC
T ss_pred HHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccC
Confidence 44453 456689999974 2 223 33343221000000 00000 0 00
Q ss_pred ccceEEEEeCCcccccceeee-ccc----------cCcccchhhhHHHHHHHHhhhhcCCCCCC--------CCCCCCCC
Q psy2764 248 VPLKHFLYVGPVLEKNQLFLI-REA----------EGEFLTRGYLAAKEVKCRKQLEKGGSGGG--------KLNGPFTR 308 (419)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 308 (419)
......+...........+.. ... .......+....++.... ....... ...+....
T Consensus 469 ~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~----hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 469 SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASN----HPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHH----CGGGSSSHHHHHCCCC----CCS
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhc----ChhhhcchHHHHHHhcccccccH
Confidence 000011110000000000000 000 000000000000000000 0000000 00000000
Q ss_pred -------CcchhHHHHHHHHHHH--cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCC
Q psy2764 309 -------GAEKNLFISFLNYLRK--SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDR 378 (419)
Q Consensus 309 -------~~~~~~~~~l~~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~ 378 (419)
.....+...+.+++.. ..+.++||||..+..++.++..|...|+.....++.+ ..+|++++++|+++...
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 0123345556666644 3557899999999999999999999898887766555 78999999999986652
Q ss_pred CchhhHHHHHHHhhhhhhccCCC
Q psy2764 379 ALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 379 ~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
. ..+|++|++++.|||++.++.
T Consensus 625 ~-~v~LlSt~agg~GlNL~~a~~ 646 (800)
T 3mwy_W 625 D-FVFLLSTRAGGLGINLMTADT 646 (800)
T ss_dssp C-CCEEEEHHHHTTTCCCTTCCE
T ss_pred c-eEEEEecccccCCCCccccce
Confidence 1 137999999999999998774
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.82 E-value=6e-19 Score=173.87 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHH--cCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHH
Q psy2764 313 NLFISFLNYLRK--SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQL 389 (419)
Q Consensus 313 ~~~~~l~~~l~~--~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~ 389 (419)
.++.++.+.+.. ..+.++||||+|++.++.+++.|...|+.....++.. ..++.-+..+++.| .|+|||++
T Consensus 458 eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g------~VtVATdm 531 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG------MVTIATNM 531 (822)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT------CEEEEETT
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC------eEEEEcch
Confidence 345566666644 3456799999999999999999999999988866654 33343444556544 47999999
Q ss_pred Hhhhhhhc--------------cCCCChhhHHHHHHHHhcCc
Q psy2764 390 LKNGIGVH--------------HSGILPILKEIVEMLFQKGL 417 (419)
Q Consensus 390 l~~GIDi~--------------~~~l~~~~r~~ie~~f~~g~ 417 (419)
++||+||+ +..+|...|.+++...+.|+
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGR 573 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGR 573 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSC
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCcccc
Confidence 99999997 33568889999998888775
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=1.1e-19 Score=184.51 Aligned_cols=322 Identities=13% Similarity=0.069 Sum_probs=178.6
Q ss_pred CccHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHHHHHHHHHhcC-------CCeEEEEcccHHHHHHHHHHH
Q psy2764 73 ELDVFQKQAIIKLE---------EHNHVFVTAHTSAGKTVIAEYAIALSQNH-------KTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~---------~~~~~iv~apTGsGKT~~~~~~i~~~~~~-------~~~~lii~Pt~~L~~q~~~~~ 136 (419)
.|+|||.+++..+. .+...|+..+||+|||+.++..+..+... ..++|||+|+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 47999999998762 45689999999999999877776655332 3569999997 8999999999
Q ss_pred HHhccc---cceEecccee---------------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchH
Q psy2764 137 RETFQD---VGLVTGDFQI---------------NTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198 (419)
Q Consensus 137 ~~~~~~---~~~~~g~~~~---------------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~ 198 (419)
.++++. +..+.|+... ....+|+|+|++.+.... .......+++||+||||++-+.. .
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~--~ 209 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD--N 209 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC--H
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh--h
Confidence 998764 2233333211 124789999999987533 22233467899999999986533 2
Q ss_pred HHHHHHHhcCCCCcEEEEeeecCChH--H---HHHHhcC---------------c------CCc----------------
Q psy2764 199 VWEEVLILLPKEVCIVMLSATVPNTL--E---FADWVGN---------------T------KKT---------------- 236 (419)
Q Consensus 199 ~~~~i~~~~~~~~~~l~~SAT~~~~~--~---~~~~l~~---------------~------~~~---------------- 236 (419)
.....+..+. ..+.+++|||+-... + +..++.. . ...
T Consensus 210 ~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 210 QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 2223334444 457799999974321 1 1111110 0 000
Q ss_pred ---cEEEEec------CCCCccceEEEEeCCcccccceeeecc---------ccCcccchhh------hHHHHHH---HH
Q psy2764 237 ---KVYVVST------LKRPVPLKHFLYVGPVLEKNQLFLIRE---------AEGEFLTRGY------LAAKEVK---CR 289 (419)
Q Consensus 237 ---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~------~~~~~~~---~~ 289 (419)
.-+.... ..-|...+..+...........+..+. ..+......+ ...++.. ..
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 0000000 001111122221111100000000000 0000000000 0000000 00
Q ss_pred hhhhcCCCC-------CCCCCCCCC---CCcchhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHH
Q psy2764 290 KQLEKGGSG-------GGKLNGPFT---RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359 (419)
Q Consensus 290 ~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~ 359 (419)
......... ......... .+.....+..+++.+....+.++||||+.+..++.++..|...|+.....++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G 448 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 448 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeC
Confidence 000000000 000000000 0111123444444444456778999999999999999999988888776555
Q ss_pred HH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC
Q psy2764 360 KI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401 (419)
Q Consensus 360 ~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l 401 (419)
.+ .++|++++++|++|+... ..+|++|++++.|||++.++.
T Consensus 449 ~~~~~~R~~~i~~F~~~~~~~-~v~L~st~a~g~Glnl~~a~~ 490 (644)
T 1z3i_X 449 TMSIKKRAKIVERFNNPSSPE-FIFMLSSKAGGCGLNLIGANR 490 (644)
T ss_dssp SCCHHHHHHHHHHHHSTTCCC-CEEEEEGGGSCTTCCCTTEEE
T ss_pred CCCHHHHHHHHHHhcCCCCCc-EEEEEecccccCCcccccCCE
Confidence 55 788999999999887610 037899999999999986653
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.78 E-value=1.5e-18 Score=172.46 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCccHHHHHHHHH----HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEe
Q psy2764 72 FELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVT 147 (419)
Q Consensus 72 ~~~~~~Q~~ai~~----~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~ 147 (419)
|+++|+|.+++.. +..++++++.||||+|||++|++++... +.+++|++||++|+.|+.+.+.++...+..+.
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 4679999998754 4688999999999999999877665433 68999999999999999999887533322222
Q ss_pred ccc------------------------------------------------------eecCCCcEEEEcHHHHHHHHhcC
Q psy2764 148 GDF------------------------------------------------------QINTTASCLVMTTEILRSMLYRG 173 (419)
Q Consensus 148 g~~------------------------------------------------------~~~~~~~Iiv~Tp~~l~~~~~~~ 173 (419)
|.. .....++|||+|+..+.+-....
T Consensus 83 gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~ 162 (540)
T 2vl7_A 83 GKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRN 162 (540)
T ss_dssp --------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHHH
T ss_pred CCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHH
Confidence 210 00124799999999987533321
Q ss_pred C-------CCCCCccEEEEeCCcccC
Q psy2764 174 S-------DVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 174 ~-------~~l~~~~~lIiDE~h~l~ 192 (419)
. ..+....++||||||.+.
T Consensus 163 ~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 163 SVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hhCcccccccCcCCCEEEEEccccHH
Confidence 1 134677899999999983
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.71 E-value=2.1e-17 Score=167.66 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=76.6
Q ss_pred CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC---
Q psy2764 326 QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI--- 401 (419)
Q Consensus 326 ~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l--- 401 (419)
.+.++||||+|+..|+.+++.|...|+.+...|+.+ ..+|.++++.|++|.. +|+|+|+++++|+|+|++++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~----~VLvaT~~l~~GlDip~v~lVI~ 513 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHY----DCLVGINLLREGLDIPEVSLVAI 513 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSC----SEEEESCCCCTTCCCTTEEEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCc----eEEEccChhhcCccCCCCCEEEE
Confidence 456799999999999999999999999877655555 7889999999999998 89999999999999997653
Q ss_pred --------ChhhHHHHHHHHhcCc
Q psy2764 402 --------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 --------~~~~r~~ie~~f~~g~ 417 (419)
|...+.+++...+.|+
T Consensus 514 ~d~d~~G~p~s~~~~iQr~GRagR 537 (664)
T 1c4o_A 514 LDADKEGFLRSERSLIQTIGRAAR 537 (664)
T ss_dssp TTTTSCSGGGSHHHHHHHHGGGTT
T ss_pred eCCcccCCCCCHHHHHHHHCccCc
Confidence 5577889998888775
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.64 E-value=1.6e-15 Score=153.86 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=76.9
Q ss_pred CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCC---
Q psy2764 326 QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI--- 401 (419)
Q Consensus 326 ~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l--- 401 (419)
.+.++||||+|+..|+.+++.|...|+.+...|+.+ ..+|.+++++|++|.. +|+|+|+++++|+|+|++++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~----~VLVaT~~l~~GlDip~v~lVi~ 519 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKY----DVLVGINLLREGLDIPEVSLVAI 519 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSC----SEEEESCCCSTTCCCTTEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCe----EEEEecchhhCCcccCCCCEEEE
Confidence 456899999999999999999999999877755555 7889999999999998 89999999999999997652
Q ss_pred --------ChhhHHHHHHHHhcCc
Q psy2764 402 --------LPILKEIVEMLFQKGL 417 (419)
Q Consensus 402 --------~~~~r~~ie~~f~~g~ 417 (419)
|...+.+++...+.|+
T Consensus 520 ~d~d~~G~p~s~~~~iQr~GRagR 543 (661)
T 2d7d_A 520 LDADKEGFLRSERSLIQTIGRAAR 543 (661)
T ss_dssp TTTTCCTTTTSHHHHHHHHHTTTT
T ss_pred eCcccccCCCCHHHHHHHhCcccC
Confidence 5677889999888775
No 82
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.59 E-value=2.3e-15 Score=150.13 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=90.9
Q ss_pred CCccHHHHHHHHH----HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc----c
Q psy2764 72 FELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----V 143 (419)
Q Consensus 72 ~~~~~~Q~~ai~~----~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~----~ 143 (419)
|+++|+|.+++.. +..++++++.||||+|||++|++++.. .+.+++|++||++|+.|+.+.+.++... +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~ 78 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITF 78 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccE
Confidence 5679999997765 468899999999999999997777665 4789999999999999999999887432 2
Q ss_pred ceEeccce----------------------------------------------------------ecCCCcEEEEcHHH
Q psy2764 144 GLVTGDFQ----------------------------------------------------------INTTASCLVMTTEI 165 (419)
Q Consensus 144 ~~~~g~~~----------------------------------------------------------~~~~~~Iiv~Tp~~ 165 (419)
..+.|... ....++|||+|+..
T Consensus 79 ~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~ 158 (551)
T 3crv_A 79 SFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPY 158 (551)
T ss_dssp EECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHH
T ss_pred EEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchH
Confidence 23333211 01257999999999
Q ss_pred HHHHHhcCCC-CCCCccEEEEeCCcccCC
Q psy2764 166 LRSMLYRGSD-VLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 166 l~~~~~~~~~-~l~~~~~lIiDE~h~l~~ 193 (419)
+.+...+... ......++||||||.+.+
T Consensus 159 l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 159 FFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9876544332 234678999999999977
No 83
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.20 E-value=4.2e-12 Score=105.70 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHH
Q psy2764 312 KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLL 390 (419)
Q Consensus 312 ~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l 390 (419)
..+...|.+++......++||||+++..++.+++.|...|+.....++.+ ..+|.+++++|++|+. ++||+|+++
T Consensus 20 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~----~vlv~T~~~ 95 (163)
T 2hjv_A 20 ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY----RYLVATDVA 95 (163)
T ss_dssp GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC----SEEEECGGG
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC----eEEEECChh
Confidence 45567888888877788999999999999999999999998888777666 7889999999999988 899999999
Q ss_pred hhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 391 KNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 391 ~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
++|+|+|+++ +|.....+++...+.|+
T Consensus 96 ~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R 128 (163)
T 2hjv_A 96 ARGIDIENISLVINYDLPLEKESYVHRTGRTGR 128 (163)
T ss_dssp TTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSC
T ss_pred hcCCchhcCCEEEEeCCCCCHHHHHHhccccCc
Confidence 9999999765 46667777777766654
No 84
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.19 E-value=5e-12 Score=106.14 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHH
Q psy2764 312 KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLL 390 (419)
Q Consensus 312 ~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l 390 (419)
..+...|.+++......++||||+++..|+.++..|...|+.+...++.+ ..+|.++++.|++|+. ++||||+++
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~----~vLvaT~~~ 91 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR----RILVATNLF 91 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC----SEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC----cEEEECCch
Confidence 45667888888887888999999999999999999999998887766666 7889999999999999 999999999
Q ss_pred hhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 391 KNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 391 ~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
++|+|+|+++ +|.....+++...+.|+
T Consensus 92 ~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R 124 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 124 (172)
T ss_dssp STTCCGGGCSEEEESSCCSSHHHHHHHHHHHTG
T ss_pred hcCcchhhCCEEEEECCCCCHHHHHHHhccccc
Confidence 9999999765 56777788888777664
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.13 E-value=7.3e-12 Score=108.91 Aligned_cols=104 Identities=9% Similarity=0.099 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHH
Q psy2764 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQL 389 (419)
Q Consensus 311 ~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~ 389 (419)
...+.+.+.+++.....+++||||+++..++.+++.|...|+.....++.+ .++|.++++.|++|.. +|+|||++
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~----~vlvaT~~ 90 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEV----RVLVATDV 90 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSC----CEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC----eEEEecCh
Confidence 455678888888887888999999999999999999999998887766666 7889999999999998 99999999
Q ss_pred HhhhhhhccC------CCChhhHHHHHHHHhcCcC
Q psy2764 390 LKNGIGVHHS------GILPILKEIVEMLFQKGLV 418 (419)
Q Consensus 390 l~~GIDi~~~------~l~~~~r~~ie~~f~~g~i 418 (419)
+++|||+|++ ++|.....+++...+.|+.
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 125 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRA 125 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCC
T ss_pred hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCC
Confidence 9999999965 4577788889888887753
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.70 E-value=7.8e-12 Score=104.80 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHh
Q psy2764 313 NLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLK 391 (419)
Q Consensus 313 ~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~ 391 (419)
.+...|.+++......++||||+++..|+.+++.|...|+.+...++.+ ..+|.+++++|++|+. ++||||++++
T Consensus 16 ~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~----~vLvaT~~~~ 91 (170)
T 2yjt_D 16 HKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV----NVLVATDVAA 91 (170)
Confidence 3455677777666677899999999999999999999998888877666 7889999999999998 9999999999
Q ss_pred hhhhhccCCC------ChhhHHHHHHHHhcC
Q psy2764 392 NGIGVHHSGI------LPILKEIVEMLFQKG 416 (419)
Q Consensus 392 ~GIDi~~~~l------~~~~r~~ie~~f~~g 416 (419)
+|+|+|+++. |.....+++...+.|
T Consensus 92 ~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~ 122 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDMPRSGDTYLHRIGRTA 122 (170)
Confidence 9999998764 444555666555544
No 87
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.09 E-value=2.7e-10 Score=114.52 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh----cCCCeEEEEcccHHHHHHHHHHHHHhccccceEe---
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ----NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVT--- 147 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~----~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~--- 147 (419)
++.|++|++.+..++.+++.|++|||||++....+..+. ..+.++++++||..++.++.+.+.......++-.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 678999999999999999999999999976555555443 3567999999999999999888776543322100
Q ss_pred ccce-ecCCC-cEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeee
Q psy2764 148 GDFQ-INTTA-SCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219 (419)
Q Consensus 148 g~~~-~~~~~-~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT 219 (419)
.... ..... .++-.+|+... +.........++++|||||+++. ...+..++..++.+.|++++.=.
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~~--~~~~~~~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQR--LRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CSCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hccchhhhhhHhhhccCCCchH--HHhccCCCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcch
Confidence 0000 00011 12222333211 11222223378999999999653 45678888888888999888643
No 88
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.08 E-value=1.6e-11 Score=103.49 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhh
Q psy2764 314 LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392 (419)
Q Consensus 314 ~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~ 392 (419)
+...+.+++.....+++||||+++..|+.++..|...|+.....++.+ ..+|.++++.|++|.. ++||||+++++
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~----~vLvaT~~~~~ 96 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE----KVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC----SEEEECCSCCT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC----eEEEEecchhc
Confidence 567788888777778999999999999999999999998877766666 7889999999999998 89999999999
Q ss_pred hhhhccCC------CC------hhhHHHHHHHHhcCc
Q psy2764 393 GIGVHHSG------IL------PILKEIVEMLFQKGL 417 (419)
Q Consensus 393 GIDi~~~~------l~------~~~r~~ie~~f~~g~ 417 (419)
|+|+|+++ +| .....+++...+.|+
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR 133 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGR 133 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC--
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhccccc
Confidence 99998654 45 566777777766654
No 89
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.08 E-value=2.3e-11 Score=101.44 Aligned_cols=84 Identities=13% Similarity=0.258 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhh
Q psy2764 314 LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392 (419)
Q Consensus 314 ~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~ 392 (419)
+.+.+.+++.....+++||||++++.|+.++..|...|+.....++.+ ..+|.++++.|++|+. ++||+|+++++
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~----~vlv~T~~~~~ 92 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS----RILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC----SEEEEEGGGTT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC----EEEEEcChhhc
Confidence 567888888877778999999999999999999999998877766665 7889999999999998 99999999999
Q ss_pred hhhhccCCC
Q psy2764 393 GIGVHHSGI 401 (419)
Q Consensus 393 GIDi~~~~l 401 (419)
|+|+|++++
T Consensus 93 G~d~~~~~~ 101 (165)
T 1fuk_A 93 GIDVQQVSL 101 (165)
T ss_dssp TCCCCSCSE
T ss_pred CCCcccCCE
Confidence 999997653
No 90
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.07 E-value=3.1e-11 Score=102.50 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHc-CCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHH
Q psy2764 312 KNLFISFLNYLRKS-QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQL 389 (419)
Q Consensus 312 ~~~~~~l~~~l~~~-~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~ 389 (419)
..+...|.+++... ...++||||+++..|+.++..|...|+.+...++.+ ..+|.+++++|++|+. ++||+|++
T Consensus 30 ~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~----~vLvaT~~ 105 (185)
T 2jgn_A 30 SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS----PILVATAV 105 (185)
T ss_dssp GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSS----SEEEEEC-
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCC----eEEEEcCh
Confidence 34566788888765 467899999999999999999999998877766665 7889999999999998 89999999
Q ss_pred HhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 390 LKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 390 l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
+++|+|+|+++ +|.....+++...+.|+
T Consensus 106 ~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R 139 (185)
T 2jgn_A 106 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 139 (185)
T ss_dssp -----CCCSBSEEEESSCCSSHHHHHHHHTTBCC
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCC
Confidence 99999999775 46667788888777665
No 91
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.06 E-value=4.1e-11 Score=102.25 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHH
Q psy2764 312 KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLL 390 (419)
Q Consensus 312 ~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l 390 (419)
..+...|.+.+... ..++||||+++..++.+++.|...|+.+...++.+ ..+|.+++++|++|+. ++||+|+++
T Consensus 40 ~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~----~vLvaT~~~ 114 (191)
T 2p6n_A 40 EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK----DVLVATDVA 114 (191)
T ss_dssp GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSC----SEEEECHHH
T ss_pred HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC----EEEEEcCch
Confidence 34556777777554 45799999999999999999999898877766665 7889999999999988 899999999
Q ss_pred hhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 391 KNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 391 ~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
++|+|+|+++ +|.....+++...+.|+
T Consensus 115 ~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR 147 (191)
T 2p6n_A 115 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGC 147 (191)
T ss_dssp HTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhCcccc
Confidence 9999999776 46677788888877665
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.02 E-value=3.3e-11 Score=109.98 Aligned_cols=103 Identities=9% Similarity=0.100 Sum_probs=88.6
Q ss_pred chhHHHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHH
Q psy2764 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQL 389 (419)
Q Consensus 311 ~~~~~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~ 389 (419)
...+.+.+.+++.....+++||||++++.++.++..|...|+.....|+.+ +.+|.++++.|++|.. +|+|||++
T Consensus 12 ~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~----~vLVaT~v 87 (300)
T 3i32_A 12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV----RVLVATDV 87 (300)
T ss_dssp SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC----CEEEECST
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc----eEEEEech
Confidence 345677888888877788999999999999999999999999888777666 7889999999999998 99999999
Q ss_pred HhhhhhhccCC------CChhhHHHHHHHHhcCc
Q psy2764 390 LKNGIGVHHSG------ILPILKEIVEMLFQKGL 417 (419)
Q Consensus 390 l~~GIDi~~~~------l~~~~r~~ie~~f~~g~ 417 (419)
+++|||+|+++ +|.....+++...+.|+
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR 121 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCc
Confidence 99999999764 56777788888877765
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.84 E-value=4.6e-09 Score=105.61 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCccHHHHHHHHH----HhcCCcEEEEcCCCCChhHHHHHHHHHH-hcCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 72 FELDVFQKQAIIK----LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 72 ~~~~~~Q~~ai~~----~~~~~~~iv~apTGsGKT~~~~~~i~~~-~~~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
|+|+|.|.+.+.. +..|+++++.||||+|||++|++++... ...+.+++|++||++|+.|+.+.+.++.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 5689999998864 4689999999999999999988876543 3457899999999999999999988764
No 94
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.75 E-value=5.3e-08 Score=96.88 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=88.6
Q ss_pred CCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccc
Q psy2764 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF 150 (419)
Q Consensus 71 ~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~ 150 (419)
++.+++.|++|+..+..++.+++.||.|||||.+....+..+...+.++++++||...+..+.+....-
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~----------- 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT----------- 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC-----------
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc-----------
Confidence 556899999999999999999999999999998765556666678899999999999998877654210
Q ss_pred eecCCCcEEEEcHHHHHHH----HhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 151 QINTTASCLVMTTEILRSM----LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 151 ~~~~~~~Iiv~Tp~~l~~~----~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
..|..+++.. +..........++|||||++++. ...+..++..++...+++++.
T Consensus 256 ---------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 256 ---------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp ---------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred ---------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 1122222110 01112234467899999999874 245677778787777777764
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.62 E-value=2.3e-07 Score=90.24 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=80.7
Q ss_pred ccHHHHHHHHHHhc-----CCcEEEEcCCCCChhHHHHHHHHHHhcCCC-eEEEEcccHHHHHHHHHHHHHhccccceEe
Q psy2764 74 LDVFQKQAIIKLEE-----HNHVFVTAHTSAGKTVIAEYAIALSQNHKT-RTIYTSPIKALSNQKYRDFRETFQDVGLVT 147 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~-----~~~~iv~apTGsGKT~~~~~~i~~~~~~~~-~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~ 147 (419)
|++-|++|+..+.. ...+++.|+.|||||.+....+..+...+. .+++++||...+..+.+.+...
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~-------- 97 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE-------- 97 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC--------
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc--------
Confidence 79999999987632 349999999999999876666666655555 8999999999988877665211
Q ss_pred ccceecCCCcEEEEcHHHHHHHH-----------hcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEE
Q psy2764 148 GDFQINTTASCLVMTTEILRSML-----------YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVML 216 (419)
Q Consensus 148 g~~~~~~~~~Iiv~Tp~~l~~~~-----------~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~ 216 (419)
+.|..++.... ......+...+++||||++.+. ...+..++..++...+++++
T Consensus 98 ------------~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~v 161 (459)
T 3upu_A 98 ------------ASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGI 161 (459)
T ss_dssp ------------EEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEE
T ss_pred ------------hhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEE
Confidence 11111111000 0122345678999999999764 24566666777666666665
Q ss_pred e
Q psy2764 217 S 217 (419)
Q Consensus 217 S 217 (419)
.
T Consensus 162 G 162 (459)
T 3upu_A 162 G 162 (459)
T ss_dssp E
T ss_pred C
Confidence 4
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.58 E-value=6.9e-08 Score=98.00 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=60.1
Q ss_pred CccHHHHHHHHHHhcC-CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 73 ELDVFQKQAIIKLEEH-NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~-~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
.|++-|.+|+..++.. .-.+|+||.|||||.+....|..+..++.++|+++||..-|+++.+++.....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~ 258 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQ 258 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCC
Confidence 3899999999987654 47899999999999987777888888899999999999999999999976543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.55 E-value=5.1e-07 Score=91.13 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=58.6
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.+++.|.+|+..++.+...+|.||+|||||.+....+..+.. .+.++++++||...++++.+++.+..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 379999999999888889999999999999876666665554 67899999999999999999987653
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.7e-07 Score=92.30 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=58.3
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.+++.|.+|+..++.+..++|.||.|||||.+....+..+.. .+.++++++||...++++.+++.+..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 379999999999988888999999999999876655555443 67899999999999999999998753
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.47 E-value=1.1e-06 Score=90.53 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
.+++.|.+|+..++.+...+|.||.|||||.+....+..+.. .+.++++++||...++++.+++.+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 479999999999888889999999999999876655555554 67899999999999999999987653
No 100
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.06 E-value=5.3e-07 Score=80.97 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHc--CCCCEEEEEcchhhHHHHHHHhhcC-CCCChhHHHHH-HHHHHHHHHhcCCc-CCCCchh-hHH
Q psy2764 312 KNLFISFLNYLRKS--QNLPVVLFTLSRKRCDQNAANLLSM-DFSTATEKSKI-HRFFQDSIRNLQNE-DDRALPQ-VKR 385 (419)
Q Consensus 312 ~~~~~~l~~~l~~~--~~~~~LIF~~t~~~~~~l~~~L~~~-~~~~~~~~~~~-~~~r~~~l~~f~~g-~~~~~~~-vlv 385 (419)
..+...+.+++... .+.++||||+++..++.++..|... |+.....++.+ ..+|.+++++|+++ +. + +|+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~----~v~L~ 170 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV----KFIVL 170 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC----CEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCC----CEEEE
Confidence 44566677776543 6678999999999999999999874 87776655555 78899999999988 44 4 789
Q ss_pred HHHHHhhhhhhccCCC
Q psy2764 386 LEQLLKNGIGVHHSGI 401 (419)
Q Consensus 386 ~t~~l~~GIDi~~~~l 401 (419)
+|+++++|+|++.++.
T Consensus 171 st~~~g~Glnl~~a~~ 186 (271)
T 1z5z_A 171 SVKAGGFGINLTSANR 186 (271)
T ss_dssp ECCTTCCCCCCTTCSE
T ss_pred ehhhhcCCcCcccCCE
Confidence 9999999999987764
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=98.02 E-value=9.4e-05 Score=69.30 Aligned_cols=115 Identities=10% Similarity=0.193 Sum_probs=78.1
Q ss_pred CCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHH--HhcCCCeEEEEcccHHHHHHHHHHHHHhccccc---
Q psy2764 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL--SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG--- 144 (419)
Q Consensus 70 ~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~--~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~--- 144 (419)
.||.|+|+|...+..+...+.+++..+-+.|||.+++..+.. +...+..+++++|++.-+..+++.+..+.....
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 567899999999988766678999999999999875544432 334667899999999999999988887654211
Q ss_pred ---e-Eecc--ceecCCCcEEEE--cHHHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 145 ---L-VTGD--FQINTTASCLVM--TTEILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 145 ---~-~~g~--~~~~~~~~Iiv~--Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
. .... .....+..|.+. .|+.+. + .+.+++|+||+|.+.+
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-----G----~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHH-----T----SCCSEEEEESGGGSTT
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCcc-----C----CCCCEEEechhhhcCC
Confidence 1 1111 112223444333 344442 1 2467999999998753
No 102
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.88 E-value=0.00034 Score=70.04 Aligned_cols=142 Identities=11% Similarity=0.199 Sum_probs=90.2
Q ss_pred cCCCCccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHH--HHhcCCCeEEEEcccHHHHHHHHHHHHHhccccce-
Q psy2764 69 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL- 145 (419)
Q Consensus 69 ~~~~~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~--~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~- 145 (419)
..||+|+|+|...+..+...+.+++..+-|+|||.+....+. .+..++.++++++|++..+.++++.++.+......
T Consensus 159 ~~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~ 238 (592)
T 3cpe_A 159 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (592)
T ss_dssp SBBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTT
T ss_pred cccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHh
Confidence 367889999999998876678899999999999987553333 23345668999999999999999988877654220
Q ss_pred -----E-ecc--ceecCCCcEEEE--cHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC--CCCcE
Q psy2764 146 -----V-TGD--FQINTTASCLVM--TTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP--KEVCI 213 (419)
Q Consensus 146 -----~-~g~--~~~~~~~~Iiv~--Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~--~~~~~ 213 (419)
. .+. .....+..|.+. .|+.+.. .+.+++|+||+|.+.+. ...+..+...+. .+.++
T Consensus 239 ~~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~i 307 (592)
T 3cpe_A 239 LQPGIVEWNKGSIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKI 307 (592)
T ss_dssp TSCCEEEECSSEEEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEE
T ss_pred hccccccCCccEEEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhccCCCceE
Confidence 1 111 112223334332 2554431 13679999999987542 244455544443 23444
Q ss_pred EEEeeecCC
Q psy2764 214 VMLSATVPN 222 (419)
Q Consensus 214 l~~SAT~~~ 222 (419)
+ +..|+..
T Consensus 308 i-~isTP~~ 315 (592)
T 3cpe_A 308 I-ITTTPNG 315 (592)
T ss_dssp E-EEECCCT
T ss_pred E-EEeCCCC
Confidence 4 3445543
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.78 E-value=0.00012 Score=69.44 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=65.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRS 168 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~ 168 (419)
+-.++.|+.|+|||.. |...... .+.+|++||++++.++.+++.+... ......-|.|.++++.
T Consensus 162 ~v~~I~G~aGsGKTt~----I~~~~~~-~~~lVlTpT~~aa~~l~~kl~~~~~-----------~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKE----ILSRVNF-EEDLILVPGRQAAEMIRRRANASGI-----------IVATKDNVRTVDSFLM 225 (446)
T ss_dssp EEEEEEECTTSCHHHH----HHHHCCT-TTCEEEESCHHHHHHHHHHHTTTSC-----------CCCCTTTEEEHHHHHH
T ss_pred cEEEEEcCCCCCHHHH----HHHHhcc-CCeEEEeCCHHHHHHHHHHhhhcCc-----------cccccceEEEeHHhhc
Confidence 4678999999999954 3332222 5679999999999999998854310 0112234788877642
Q ss_pred HHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 169 MLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 169 ~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
.......-..+++|||||-++.. ..+..++..++. .+++++.
T Consensus 226 --~~~~~~~~~~d~liiDE~sm~~~----~~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 226 --NYGKGARCQFKRLFIDEGLMLHT----GCVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp --TTTSSCCCCCSEEEEETGGGSCH----HHHHHHHHHTTC-SEEEEEE
T ss_pred --CCCCCCCCcCCEEEEeCcccCCH----HHHHHHHHhCCC-CEEEEec
Confidence 22211222478999999997632 234444444443 4555544
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=0.00012 Score=61.21 Aligned_cols=119 Identities=11% Similarity=0.076 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhccccc
Q psy2764 75 DVFQKQAIIKLE---------EHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQDVG 144 (419)
Q Consensus 75 ~~~Q~~ai~~~~---------~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~ 144 (419)
.+.|++++..+. .++.+++.||+|+|||..+......+. ..+..+++ ++..++..+....+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~---- 90 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-FDTKDLIFRLKHLMDEGK---- 90 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-EEHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHHhcCch----
Confidence 567887776652 578999999999999987554444443 34444444 445555555444332210
Q ss_pred eEeccceecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCccc-CCCcchHHHHHHHHhcC-CCCcEEEEeeecCC
Q psy2764 145 LVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYI-NDSERGHVWEEVLILLP-KEVCIVMLSATVPN 222 (419)
Q Consensus 145 ~~~g~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l-~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~ 222 (419)
.. .+...+ .+.+++|+||++.. .+......+..++.... .+..+++.|-..+.
T Consensus 91 -----------~~-------~~~~~~-------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 91 -----------DT-------KFLKTV-------LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp -----------CS-------HHHHHH-------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred -----------HH-------HHHHHh-------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 00 122222 25689999999954 23223334444444332 44555555544444
Q ss_pred h
Q psy2764 223 T 223 (419)
Q Consensus 223 ~ 223 (419)
.
T Consensus 146 ~ 146 (180)
T 3ec2_A 146 R 146 (180)
T ss_dssp C
T ss_pred H
Confidence 3
No 105
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.54 E-value=0.00025 Score=71.92 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~----~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
+++-|.+|+. ..+..++|.|+.|||||.+...-+..+... ..+++++++|+..+.++.+++.+..+
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 6999999997 356789999999999998866656555433 36899999999999999999998754
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0011 Score=60.49 Aligned_cols=123 Identities=8% Similarity=0.052 Sum_probs=62.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC-------CCeEEEEc-ccHHHHHHHHHHHHHhccccceEeccceecCCCcE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH-------KTRTIYTS-PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASC 158 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~-------~~~~lii~-Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~I 158 (419)
.+.++++.||+|+|||.+.-..+..+... ....+.|- ....--.+.+..+.+-+..... ..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~-~~---------- 112 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL-CG---------- 112 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC---C----------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-Cc----------
Confidence 56799999999999998766665554321 22334433 1111122333333322211100 00
Q ss_pred EEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhc---CCCCcEEEEeeecCChH
Q psy2764 159 LVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILL---PKEVCIVMLSATVPNTL 224 (419)
Q Consensus 159 iv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~ 224 (419)
-.+-+.+..++......-...-++++||+|.+.+ ...+..+++.. ..+.-+|+.++|+....
T Consensus 113 -~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 113 -DISLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp -CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred -hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 0123344444443211223456899999999872 33444444432 22456778888886544
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.48 E-value=0.00014 Score=58.71 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.++.+++.+|+|+|||..+-.........+.+++++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 788999999999999976544443333344445444
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.42 E-value=0.00046 Score=57.83 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~ 126 (419)
.++-.++.+|.|+|||+.++-.+......+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4667889999999999876555555556778899998884
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.41 E-value=0.00058 Score=57.46 Aligned_cols=40 Identities=13% Similarity=-0.028 Sum_probs=32.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~ 126 (419)
.|+-.++.+|.|+|||+.++-.+......+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4567889999999999887666667777889999999884
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.38 E-value=0.0011 Score=57.13 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=56.8
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
..|.-+++.+|+|+|||+.++-.+..+...+.+++++.|...- . . ..+.....|+ . ...+-+.+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~--~~~i~srlG~-----~---~~~~~~~~~~~ 76 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-S--IRNIQSRTGT-----S---LPSVEVESAPE 76 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-G--CSSCCCCCCC-----S---SCCEEESSTHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-H--HHHHHHhcCC-----C---ccccccCCHHH
Confidence 3567888999999999988766666777778899999876531 0 0 0011111111 0 01223455555
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+...+.... .-.+.++|||||++.+.
T Consensus 77 i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 77 ILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp HHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred HHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 665554322 22457999999999764
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.26 E-value=0.002 Score=59.24 Aligned_cols=76 Identities=20% Similarity=0.417 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
+..+++.||+|+|||..+-.....+...+..++++.. ..+..+....+... ..+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~----------------------~~~~~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DDFAQAMVEHLKKG----------------------TINEFR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHHHHHHHHT----------------------CHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HHHHHHHHHHHHcC----------------------cHHHHH
Confidence 3689999999999998755544444444556666543 33443333333210 112222
Q ss_pred HHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 168 SMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 168 ~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
..+ .+.+++++||+|.+..
T Consensus 94 ~~~-------~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 94 NMY-------KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHH-------HTCSEEEEECGGGGTT
T ss_pred HHh-------cCCCEEEEcCcccccC
Confidence 222 2357999999999864
No 112
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.00094 Score=62.77 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+..+++.||+|+|||..+-.....+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998755444333
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.09 E-value=0.0021 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
..++++.||+|+|||..+......+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999997755444443
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.09 E-value=0.0014 Score=66.73 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=62.9
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEec
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG 148 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g 148 (419)
.+++-|.+|+.. .+..++|.|+.|||||.+...-+..+.. ...++|+|+.|+..+.++.+++.+..+..+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~---- 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE---- 75 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT----
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc----
Confidence 368999999975 4779999999999999876554544332 347899999999999999999998754310
Q ss_pred cceecCCCcEEEEcHHHHHH
Q psy2764 149 DFQINTTASCLVMTTEILRS 168 (419)
Q Consensus 149 ~~~~~~~~~Iiv~Tp~~l~~ 168 (419)
...+-|+|...+..
T Consensus 76 ------~~~~~v~Tfhs~~~ 89 (673)
T 1uaa_A 76 ------ARGLMISTFHTLGL 89 (673)
T ss_dssp ------TTTSEEEEHHHHHH
T ss_pred ------ccCCEEEeHHHHHH
Confidence 12456677766653
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.02 E-value=0.0017 Score=66.68 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhc----CCCeEEEEcccHHHHHHHHHHHHHhccccceEecc
Q psy2764 74 LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGD 149 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~----~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~ 149 (419)
|++-|.+|+.. .+..++|.|+.|||||.+...-+..+.. ...++|+|+.|+..+.++.+++.+..+.-
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~------ 83 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA------ 83 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG------
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc------
Confidence 69999999975 4679999999999999886655555443 34689999999999999999998875421
Q ss_pred ceecCCCcEEEEcHHHHHH
Q psy2764 150 FQINTTASCLVMTTEILRS 168 (419)
Q Consensus 150 ~~~~~~~~Iiv~Tp~~l~~ 168 (419)
...+-|+|...+..
T Consensus 84 -----~~~~~v~Tfhs~~~ 97 (724)
T 1pjr_A 84 -----AEDVWISTFHSMCV 97 (724)
T ss_dssp -----GTTSEEEEHHHHHH
T ss_pred -----ccCcEEeeHHHHHH
Confidence 12345777666653
No 116
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.00 E-value=0.00063 Score=54.53 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCCChhHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~ 107 (419)
..+.++++.+|+|+|||.++-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 5778999999999999976543
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.00 E-value=0.0047 Score=52.27 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
..+++.||+|+|||..+......+...+..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78999999999999876555445545555565543
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.98 E-value=0.0013 Score=57.24 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+..+++.||+|+|||..+......+...+..++++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4789999999999999875554444444455555543
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.93 E-value=0.0043 Score=49.42 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHhcCCcEEEEcCCCCChhHH
Q psy2764 83 IKLEEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 83 ~~~~~~~~~iv~apTGsGKT~~ 104 (419)
.....+.++++.+|+|+|||.+
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3345778999999999999965
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.93 E-value=0.0044 Score=59.50 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=53.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhc--CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~--~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
...+++.||+|+|||..+-.....+.. .+..++++.. ..+..+....+... ..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~~~~~~----------------------~~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG----------------------KLNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHHHHHTT----------------------CHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHcc----------------------cHHH
Confidence 368999999999999875444333322 2555666543 33444443333210 1122
Q ss_pred HHHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHh-cCCCCcEEEEe
Q psy2764 166 LRSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLIL-LPKEVCIVMLS 217 (419)
Q Consensus 166 l~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~-~~~~~~~l~~S 217 (419)
+...+. ...++++|||+|.+... .....+..++.. ...+.++++.|
T Consensus 187 ~~~~~~------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt 234 (440)
T 2z4s_A 187 FREKYR------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS 234 (440)
T ss_dssp HHHHHT------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHhc------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 222111 15679999999998753 122223333333 33455655544
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.92 E-value=0.0077 Score=51.35 Aligned_cols=39 Identities=8% Similarity=0.212 Sum_probs=23.7
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
....++|+||+|.+... ....+..++...+.+..+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999988542 2333444555544555555544
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.026 Score=46.70 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
..++++.||+|+|||..+......
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999765444333
No 123
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.87 E-value=0.0038 Score=53.09 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=32.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 127 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~ 127 (419)
.|+-.++.+|.|+|||+.++-.+......+.+++++.|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 35566789999999998866666677778999999999864
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.85 E-value=0.0055 Score=56.52 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=26.4
Q ss_pred cHHHHHHHHHH----hcCC---cEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 75 DVFQKQAIIKL----EEHN---HVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 75 ~~~Q~~ai~~~----~~~~---~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
.|+|.+++..+ .+++ .+++.||.|+|||.++......+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 45666665544 3443 489999999999987665555544
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.84 E-value=0.0015 Score=54.73 Aligned_cols=40 Identities=8% Similarity=-0.051 Sum_probs=31.8
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
..++-.++.+|.|+|||+-.+-.+......+.+++++.|.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 3567889999999999976555666666678899999887
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.84 E-value=0.0046 Score=61.67 Aligned_cols=114 Identities=21% Similarity=0.201 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHhc--CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce
Q psy2764 74 LDVFQKQAIIKLEE--HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151 (419)
Q Consensus 74 ~~~~Q~~ai~~~~~--~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~ 151 (419)
+|.-|.+|+..+.. ....++.|+-|.|||.+.-+++..+. .+++|.+|+.+-+....+...+
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~~~~~------------- 239 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQFAGE------------- 239 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHHHGG-------------
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHHHhhC-------------
Confidence 68999999998854 45689999999999954333333332 3479999999877755444321
Q ss_pred ecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 152 INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 152 ~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
.|-+..|+.+.. .....+++|||||=.+. .+.+..++. ....++||.|+...
T Consensus 240 -----~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 240 -----KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPRTLLTTTVQGY 291 (671)
T ss_dssp -----GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSEEEEEEEBSST
T ss_pred -----CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCeEEEEecCCcC
Confidence 133456766431 23468999999999874 344555544 23347778887543
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.83 E-value=0.0018 Score=60.96 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
...+++.||+|+|||..+......+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999998755444433
No 128
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.83 E-value=0.0093 Score=53.12 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i 109 (419)
..+++.||+|+|||.++....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 589999999999997654433
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.77 E-value=0.0029 Score=59.53 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS 123 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~ 123 (419)
.+++.||+|+|||..+-.....+... +..++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 79999999999998754444444433 45566654
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.01 Score=56.42 Aligned_cols=131 Identities=10% Similarity=0.080 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++++|+|+|||+.+.-....+...+.+++++. +.|.-+.++...+....+ +........ ..|..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g-v~~~~~~~~---------~dp~~i 167 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG-VQVYGEPNN---------QNPIEI 167 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT-CCEECCTTC---------SCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC-Cceeecccc---------CCHHHH
Confidence 47888999999999987666666666778887766 445444443333333211 112211111 124333
Q ss_pred H-HHHhcCCCCCCCccEEEEeCCcccC---CCcchHHHHHHHHhcCCCCcEEEEeeecCCh-HHHHHHhc
Q psy2764 167 R-SMLYRGSDVLRDLEYVIFDEVHYIN---DSERGHVWEEVLILLPKEVCIVMLSATVPNT-LEFADWVG 231 (419)
Q Consensus 167 ~-~~~~~~~~~l~~~~~lIiDE~h~l~---~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~-~~~~~~l~ 231 (419)
. ..+... .....+++|+|++.++. +......+..+.+.+.+..-++.++|+.... ...++.+.
T Consensus 168 ~~~al~~a--~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 168 AKKGVDIF--VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp HHHHHHHT--TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 2 222221 22478999999998653 3334455566666666666677888886533 23444444
No 131
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.66 E-value=0.00081 Score=67.53 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHH--HHHhh
Q psy2764 315 FISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE--QLLKN 392 (419)
Q Consensus 315 ~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t--~~l~~ 392 (419)
.+.+.+++...++ .+|||++|....+.+++.|...+.. ...+.....+.+.+++|+ +.. .||+++ ..+.+
T Consensus 437 ~~~i~~l~~~~~g-~~lvlF~Sy~~l~~v~~~l~~~~~~--~~q~~~~~~~~~ll~~f~-~~~----~vL~~v~~gsf~E 508 (620)
T 4a15_A 437 ATVIEDIILKVKK-NTIVYFPSYSLMDRVENRVSFEHMK--EYRGIDQKELYSMLKKFR-RDH----GTIFAVSGGRLSE 508 (620)
T ss_dssp HHHHHHHHHHHCS-CEEEEESCHHHHHHHTSSCCSCCEE--CCTTCCSHHHHHHHHHHT-TSC----CEEEEETTSCC--
T ss_pred HHHHHHHHHhCCC-CEEEEeCCHHHHHHHHHHHHhcchh--ccCCCChhHHHHHHHHhc-cCC----cEEEEEecCceec
Confidence 3455555554444 4999999999999999998732222 111111245788999999 655 688886 48999
Q ss_pred hhhhccCC
Q psy2764 393 GIGVHHSG 400 (419)
Q Consensus 393 GIDi~~~~ 400 (419)
|||++.-.
T Consensus 509 GiD~~g~~ 516 (620)
T 4a15_A 509 GINFPGNE 516 (620)
T ss_dssp ------CC
T ss_pred cccCCCCc
Confidence 99998644
No 132
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.66 E-value=0.0052 Score=52.78 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 127 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~ 127 (419)
.|+-.++.++.|+|||+.++-.+......+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 56778889999999998866667777778999999998864
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0092 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.....+++.||+|+|||..+-..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHH
Confidence 35678999999999999764433
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.62 E-value=0.0055 Score=55.76 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~ 123 (419)
+.++++.||+|+|||..+......+. ..+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 68999999999999987655554555 5666666654
No 135
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.62 E-value=0.0031 Score=68.59 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=53.4
Q ss_pred CccHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHhcC------CCeEEEEcccHHHHHHHHHHHHHhc
Q psy2764 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNH------KTRTIYTSPIKALSNQKYRDFRETF 140 (419)
Q Consensus 73 ~~~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~------~~~~lii~Pt~~L~~q~~~~~~~~~ 140 (419)
++|+-|.++|.. .+++++|.|.-|||||.+.+--+..+... ..+++++++|++.+.++.+++....
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 369999999975 48899999999999998755545544333 3589999999999999999998743
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.0046 Score=57.91 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcC---CCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNH---KTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~---~~~~lii~ 123 (419)
+..+++.||+|+|||..+-.....+... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5789999999999998654444333222 44555554
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.53 E-value=0.007 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+.++++.||+|+|||.++-.....+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999998765444333
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.50 E-value=0.0099 Score=55.12 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=27.2
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
..+.+++|+||+|.+ +......+..++...+.+..+++.|-.+.
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 346789999999995 43444455556666555666666554443
No 139
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.45 E-value=0.0044 Score=52.57 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=31.3
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKA 127 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~ 127 (419)
..|.-.++.+|-|+|||+.++-.+......+.+++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 356778899999999998655555566667888999999764
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.40 E-value=0.006 Score=55.90 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=24.0
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
...+++++||+|.+........+..++...+.+.++++.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998851223333444444444456666633
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.35 E-value=0.01 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..+.++++.||+|+|||.++-..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHH
Confidence 46789999999999999764433
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.022 Score=51.93 Aligned_cols=39 Identities=8% Similarity=0.275 Sum_probs=23.8
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
.+..++|+||+|.+... ....+..++...+.+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999988542 2333444445545555555543
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.043 Score=51.41 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=33.4
Q ss_pred ccccccchhccCCCccccccccccccccccCCCCccHHHH-HHHHHH--hcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 40 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQK-QAIIKL--EEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~Q~-~ai~~~--~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
..|..+|.+.-|+......+.+.+. .|... +.+..+ ...+.+++.||+|+|||+.+-...
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~----------~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIE----------LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTH----------HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHH----------HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 3466788887777654432222211 11111 111111 235799999999999997644333
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.027 Score=49.03 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
..|..+++.||+|+|||..+...+......+.+++++.-. ....++.+++.++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 3678999999999999987555555445567778887643 3356666666543
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.24 E-value=0.063 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=17.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.||+|+|||..+.......
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999997654444333
No 146
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.026 Score=51.17 Aligned_cols=20 Identities=0% Similarity=-0.057 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
..+++.||.|+|||.++...
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999765443
No 147
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.00 E-value=0.083 Score=49.05 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEE
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l 120 (419)
++.+++.||+|+|||.++-.....+....+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~ 102 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA 102 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCccc
Confidence 358999999999999876555444433334333
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.97 E-value=0.01 Score=56.88 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
.++++.||+|+|||.++-..
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 47999999999999765433
No 149
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.032 Score=51.42 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
...+++|+||+|.+.. .....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999998854 23344555555555556655543
No 150
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.95 E-value=0.033 Score=52.96 Aligned_cols=131 Identities=8% Similarity=0.057 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEIL 166 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l 166 (419)
..+++++++|+|||+.+.-.+..+...+.+++++. |.|.-+.++...+....+ +.++..... ..|..+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g-vpv~~~~~~---------~dp~~i 170 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQE---------KDAIKL 170 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT-CEEECCTTC---------CCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC-CcEEecCCC---------CCHHHH
Confidence 47889999999999987766667777788887776 556555444444433221 111111111 124333
Q ss_pred H-HHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecCChH-HHHHHhc
Q psy2764 167 R-SMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPNTL-EFADWVG 231 (419)
Q Consensus 167 ~-~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~-~~~~~l~ 231 (419)
. ..+... .-..++++|||.+-++... ..-..+..+.....+..-++.+.||..... ..++.+.
T Consensus 171 ~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 171 AKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp HHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred HHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 2 222111 1134789999999765322 223334455555555666778888875332 3444444
No 151
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.037 Score=54.21 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
+.+++.||+|+|||.++-.....+ +..++.+-.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence 689999999999997654443333 445555543
No 152
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.80 E-value=0.073 Score=48.59 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~ 107 (419)
.+.+++.||+|+|||+.+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 36899999999999976433
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.78 E-value=0.011 Score=53.61 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..+.++++.||+|+|||.++-..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHH
Confidence 45789999999999999765443
No 154
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.77 E-value=0.025 Score=51.71 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.||+|+|||.++-..
T Consensus 51 ~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999765443
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.76 E-value=0.048 Score=50.10 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
.++++.||+|+|||.++-..
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999765443
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.72 E-value=0.044 Score=47.11 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
.|..+++.+|+|+|||+.+...+......+.+++++... ....++...+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~ 72 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE-ESRDSIIRQAKQ 72 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS-SCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc-cCHHHHHHHHHH
Confidence 578899999999999976544443443445567776532 223444444443
No 157
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.041 Score=50.78 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 178 RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 178 ~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
....++++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999988542 2333444555545555555543
No 158
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.076 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
..+.+++.||+|||||+.+-...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34799999999999997644333
No 159
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.57 E-value=0.014 Score=49.93 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.|.-+++.+|+|+|||..+...+. ..+..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 567899999999999986544433 44667777763
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.56 E-value=0.023 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
....+++.||+|+|||+++-..
T Consensus 237 ~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHH
Confidence 4568999999999999765433
No 161
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.55 E-value=0.05 Score=50.45 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+.+++.||+|+|||+++-.....+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999998754444333
No 162
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.53 E-value=0.078 Score=49.81 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
..++++.||+|+|||.++-..
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 479999999999999765433
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.52 E-value=0.13 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..+.+++.||+|+|||..+-..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3468999999999999765443
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.46 E-value=0.043 Score=51.83 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=17.5
Q ss_pred CCcEEE--EcCCCCChhHHHHHHHHH
Q psy2764 88 HNHVFV--TAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 88 ~~~~iv--~apTGsGKT~~~~~~i~~ 111 (419)
+..+++ .||.|+|||..+......
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 357888 899999999775444433
No 165
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.39 E-value=0.046 Score=48.74 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=32.8
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC----------CCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH----------KTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~----------~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
..|.-+++.+|+|+|||+.+...+..+... +.+++++.--.. ..++..++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~~ 90 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHAL 90 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHHH
Confidence 478899999999999998755544433332 356777654332 24444444443
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.39 E-value=0.048 Score=49.69 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
...+++.||+|+|||..+-..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 478999999999999765443
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.35 E-value=0.11 Score=47.30 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=37.4
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHh
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRET 139 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~ 139 (419)
+..|.-+++.|++|+|||..++-.+......+..++++.-- .-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 34678999999999999976555554555556778887633 4556666666544
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.34 E-value=0.049 Score=52.25 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=56.9
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEcccHHHHHHHHHHHHHhcccc---ceEeccceec--------
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQDV---GLVTGDFQIN-------- 153 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~---~~~~g~~~~~-------- 153 (419)
..|.-+++.|++|+|||..++-.+.... ..+.+++++..- .-..|+..++......+ .+..|.....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 4567899999999999976555444443 346678887643 33445665554322211 1111211100
Q ss_pred ----CCCcEEEE-----cHHHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 154 ----TTASCLVM-----TTEILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 154 ----~~~~Iiv~-----Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
....+.+. |++.+...+.+-.. -.++++||||..+.+..
T Consensus 277 ~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 01234442 44444433322100 12588999999998754
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.31 E-value=0.018 Score=52.90 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=36.2
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
..|.-+++.|++|+|||..++-.+......+..++|+.. ..-..|+..++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl-Ems~~ql~~Rlls 95 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL-EMSAEQLALRALS 95 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES-SSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHH
Confidence 467889999999999998665555544446778888764 3335566666543
No 170
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.15 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
..+.+++.||+|+|||+.+-...
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHH
Confidence 45799999999999997644333
No 171
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.17 E-value=0.098 Score=48.52 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.||+|+|||.++-..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999765443
No 172
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.13 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
..+.+++.||+|||||+.+-...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34689999999999997644433
No 173
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.065 Score=48.64 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=23.0
Q ss_pred CccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 179 ~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
+..++||||+|.+.... ...+..++...+.+..+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46799999999885422 223344444444556666544
No 174
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.13 E-value=0.13 Score=42.88 Aligned_cols=40 Identities=25% Similarity=0.141 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~ 126 (419)
....+++..++|.|||.+++-........+.+|+|+.-.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 4569999999999999998777778888899999995443
No 175
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.11 E-value=0.035 Score=46.43 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=25.6
Q ss_pred CCCccEEEEeCCccc--CCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 177 LRDLEYVIFDEVHYI--NDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 177 l~~~~~lIiDE~h~l--~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
..+.+++|+||+..+ .+..+...++.+ +.....+++-|+|.+.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~---l~~~~~~ilgti~vsh 147 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQT---LSTPGTIILGTIPVPK 147 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHH---HHCSSCCEEEECCCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHH---HhCCCcEEEEEeecCC
Confidence 567889999998766 333343434444 4334445655777653
No 176
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.99 E-value=0.039 Score=54.33 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+..+++.+|+|+|||+.+-..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4779999999999999865443
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.96 E-value=0.08 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=17.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.||+|+|||..+......+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999998754444333
No 178
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.92 E-value=0.062 Score=51.67 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=33.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEcccHHHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTSPIKALSNQKYRDF 136 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~Pt~~L~~q~~~~~ 136 (419)
..|.-+++.|++|+|||..+...+..... .+..++++..-. -..|+..++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~ 251 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRM 251 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHH
Confidence 46789999999999999865554444433 466788876432 234555554
No 179
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.92 E-value=0.078 Score=50.71 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=69.4
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccc---eEecc--ceec-------
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG---LVTGD--FQIN------- 153 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~---~~~g~--~~~~------- 153 (419)
..|.-+++.|++|+|||..++-.+......+.+++++.-- .-..|+..++......+. +..|. ....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE-ms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSM 273 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS-SCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence 4678899999999999987655555554457788887633 344555555544322211 11111 1000
Q ss_pred -----CCCcEEE-----EcHHHHHHHHhcCCCCCCCcc--EEEEeCCcccCCC----cchHHHHHHHHhcC-----CCCc
Q psy2764 154 -----TTASCLV-----MTTEILRSMLYRGSDVLRDLE--YVIFDEVHYINDS----ERGHVWEEVLILLP-----KEVC 212 (419)
Q Consensus 154 -----~~~~Iiv-----~Tp~~l~~~~~~~~~~l~~~~--~lIiDE~h~l~~~----~~~~~~~~i~~~~~-----~~~~ 212 (419)
...++.| .|++.+...+.+-.. -.+++ +||||-.+.+... .+...+..+.+.+. .++.
T Consensus 274 a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~ 352 (444)
T 3bgw_A 274 AIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVV 352 (444)
T ss_dssp HHHHHHTSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 0234443 255555543322110 12578 9999999977432 22223333333332 2566
Q ss_pred EEEEee
Q psy2764 213 IVMLSA 218 (419)
Q Consensus 213 ~l~~SA 218 (419)
++++|-
T Consensus 353 vi~lsq 358 (444)
T 3bgw_A 353 VIALSQ 358 (444)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666654
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.82 E-value=0.024 Score=51.95 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=35.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC------CCeEEEEcccHHH-HHHHHHHHHHh
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH------KTRTIYTSPIKAL-SNQKYRDFRET 139 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~------~~~~lii~Pt~~L-~~q~~~~~~~~ 139 (419)
.|.-+++.||+|+|||..+...+.....+ +.+++++.-...+ ..++...+.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999998765555544443 6788888754432 44555555443
No 181
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.79 E-value=0.084 Score=50.56 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~ 107 (419)
.+.+++.||+|+|||+.+-.
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999976433
No 182
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.74 E-value=0.081 Score=47.57 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
..+++.||+|+|||..+-.....+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999997654444333
No 183
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.41 E-value=0.077 Score=47.90 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..++.+++.||+|+|||+.+-..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHH
Confidence 35678999999999999764433
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.38 E-value=0.038 Score=61.87 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=58.9
Q ss_pred HHHHhc------CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCC
Q psy2764 82 IIKLEE------HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTT 155 (419)
Q Consensus 82 i~~~~~------~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~ 155 (419)
+..++. ++++++.+|+|+|||..+...+......+.+++|+..-..+.... .+++..++.-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~---------- 1481 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN---------- 1481 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTT----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchh----------
Confidence 555555 789999999999999987777777777889999998664433333 3333222110
Q ss_pred CcEEEEcH---HHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 156 ASCLVMTT---EILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 156 ~~Iiv~Tp---~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+.|..| +.+...+.+.. .-..+++|||||++.+.
T Consensus 1482 --l~v~~~~~~E~~l~~~~~lv-r~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1482 --LLCSQPDTGEQALEICDALA-RSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp --CEEECCSSHHHHHHHHHHHH-HHTCCSEEEESCGGGCC
T ss_pred --ceeecCChHHHHHHHHHHHH-hcCCCCEEEEcChhHhc
Confidence 122222 34443332210 11357899999998554
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.37 E-value=0.19 Score=46.64 Aligned_cols=90 Identities=19% Similarity=0.137 Sum_probs=52.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEE---EcH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLV---MTT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv---~Tp 163 (419)
.|.-+++.+|+|+|||..++-.+......+.+++|+..-..+ .+.+ ..++..+. .++.+ .|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~-~~~~--a~~~g~d~------------~~l~i~~~~~~ 137 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL-DPVY--ARALGVNT------------DELLVSQPDNG 137 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CHHH--HHHTTCCG------------GGCEEECCSSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh-hHHH--HHHcCCCH------------HHceeecCCcH
Confidence 457899999999999987666666666667788888754432 2221 22221111 01112 244
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~ 192 (419)
+.+...+..-. .-..+++||||.+..+.
T Consensus 138 e~~l~~l~~l~-~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 138 EQALEIMELLV-RSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHH-TTTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHH-hcCCCCEEEEeChHHhc
Confidence 54444332210 11357899999999875
No 186
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.31 E-value=0.088 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~ 111 (419)
++++.||+|+|||..+......
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 6999999999999765444433
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.99 E-value=1.8 Score=39.28 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHH
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
++-+.+.+.. .....++|.||.|+|||......
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHH
Confidence 4455555555 44479999999999999754333
No 188
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.68 Score=43.60 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+.+++.+|+|+|||+.+-...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHH
Confidence 4789999999999997644333
No 189
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.78 E-value=0.13 Score=50.05 Aligned_cols=52 Identities=6% Similarity=-0.040 Sum_probs=35.9
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEcccHHHHHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
..|.-+++.|++|+|||..++-.+...... +.+++++.- ..-..|+..++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~~~ 292 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDLIG 292 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHH
Confidence 467789999999999998766555555554 677888764 3334566666543
No 190
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.74 E-value=0.24 Score=50.84 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~ 105 (419)
.+.+++.+|.|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999653
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.25 E-value=0.13 Score=48.70 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=29.8
Q ss_pred cHHHHHHHHHH--hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 75 DVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 75 ~~~Q~~ai~~~--~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.+-+..++..+ ..+..+++.+|||||||+..-..+-.+......++++
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 34455566554 3556789999999999986433333333334555554
No 192
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.13 E-value=0.29 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
++++.||||+|||.++-.....+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999998755444343
No 193
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.11 E-value=0.19 Score=41.23 Aligned_cols=120 Identities=10% Similarity=-0.020 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHH--hcCCcEEEEcCCCCChhHHHHHH-HHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccc
Q psy2764 74 LDVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYA-IALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF 150 (419)
Q Consensus 74 ~~~~Q~~ai~~~--~~~~~~iv~apTGsGKT~~~~~~-i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~ 150 (419)
..+-|..|+..+ ...+..++.++-|++|+...+.. +......|.++.+++|+..-.....+....-.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~---------- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSG---------- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSS----------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCc----------
Confidence 367799999887 45568889999999999663332 33445688999999999886665544332111
Q ss_pred eecCCCcEEEEcHHHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHh-cCCCCcEEEEeee
Q psy2764 151 QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL-LPKEVCIVMLSAT 219 (419)
Q Consensus 151 ~~~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~-~~~~~~~l~~SAT 219 (419)
+++ |- ..+......+..=+.+|||||-.+.. ..+..++.. ...+.|+|++--+
T Consensus 105 ------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 105 ------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp ------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCEEEEESS
T ss_pred ------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEEEEeCCc
Confidence 010 10 01112222234556899999998732 333444433 3367888887544
No 194
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.02 E-value=0.097 Score=49.98 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=36.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~ 130 (419)
...++++.|+||+|||......+..+...+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 46799999999999998754466666777888999999988864
No 195
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.77 E-value=0.011 Score=62.51 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=48.3
Q ss_pred HHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh--------------hhHHHHHHHHhcCc
Q psy2764 357 EKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP--------------ILKEIVEMLFQKGL 417 (419)
Q Consensus 357 ~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~--------------~~r~~ie~~f~~g~ 417 (419)
+|+.+ ..+|..+++.|++|.. +|||||+++++|||+|++.+.. ....+++...+.|+
T Consensus 405 ~H~gl~~~~R~~v~~~F~~G~~----kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 405 HHGGLLPIVKELIEILFSKGFI----KVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCC----SEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred ecCCCCHHHHHHHHHHHHCCCC----cEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 34444 7889999999999999 9999999999999999877654 67788998888876
No 196
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.58 E-value=0.82 Score=43.92 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.+|+|+|||+.+-..
T Consensus 49 p~gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357999999999999764433
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.46 E-value=0.47 Score=43.28 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=22.1
Q ss_pred cHHHHHHHHH-HhcCCcEEEEcCCCCChhHHH
Q psy2764 75 DVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 75 ~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~ 105 (419)
++-+.+.+.. +..++.+++.||.|+|||...
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHH
Confidence 4445555544 345689999999999999653
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.38 E-value=0.14 Score=47.20 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcC------CCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNH------KTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~------~~~~lii~P 124 (419)
.|.-+.+.+|+|+|||..+...+.....+ +.+++++.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 56789999999999998755444443222 357777754
No 199
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=92.25 E-value=0.028 Score=55.61 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCCEEEEEcchhhHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHhcCCcCCCCchhhHHHH--HHHhh
Q psy2764 315 FISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE--QLLKN 392 (419)
Q Consensus 315 ~~~l~~~l~~~~~~~~LIF~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~~~~~vlv~t--~~l~~ 392 (419)
.+.+.+++... .+.+|||++|....+.+++.+ +.........+ .+.+.++.|+.... .|++++ ..+.+
T Consensus 382 ~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~~---~~~v~~q~~~~--~~~~~~~~~~~~~~----~vl~~v~gg~~~E 451 (551)
T 3crv_A 382 ADYLLKIYFQA-KANVLVVFPSYEIMDRVMSRI---SLPKYVESEDS--SVEDLYSAISANNK----VLIGSVGKGKLAE 451 (551)
T ss_dssp HHHHHHHHHHC-SSEEEEEESCHHHHHHHHTTC---CSSEEECCSSC--CHHHHHHHTTSSSS----CEEEEESSCCSCC
T ss_pred HHHHHHHHHhC-CCCEEEEecCHHHHHHHHHhc---CCcEEEcCCCC--CHHHHHHHHHhcCC----eEEEEEecceecc
Confidence 34555555444 346999999999999998742 22221111111 13456778853333 578887 68999
Q ss_pred hhhhcc
Q psy2764 393 GIGVHH 398 (419)
Q Consensus 393 GIDi~~ 398 (419)
|||+|+
T Consensus 452 GiD~~d 457 (551)
T 3crv_A 452 GIELRN 457 (551)
T ss_dssp SSCCEE
T ss_pred cccccc
Confidence 999993
No 200
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.23 E-value=0.45 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+.++++.||+|+|||.++.....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999987544433
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.03 E-value=0.26 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
..++++.||+|+|||.++......+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999997654444433
No 202
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.03 E-value=0.2 Score=48.80 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=29.7
Q ss_pred cHHHHHHHHH-HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 75 DVFQKQAIIK-LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 75 ~~~Q~~ai~~-~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
++.+..-+.. +..|.+++++||||||||+.. ..+..+.....+++.+-
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giitie 294 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEE
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEEc
Confidence 3444444433 468889999999999999763 23333344444555543
No 203
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.95 E-value=0.21 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+..+++.+|+|+|||..+...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 55678999999999997654443
No 204
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.89 E-value=0.12 Score=45.45 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=24.7
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEE
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYT 122 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii 122 (419)
+..|..+.+.+|||||||+..-..+-..... ...+++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 4578899999999999998644333333222 3445443
No 205
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.59 E-value=0.16 Score=47.61 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
.+.++++.||||+|||...-..+......+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 567999999999999987655565666678889998887663
No 206
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.40 E-value=0.2 Score=45.01 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=63.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp 163 (419)
.++.+++.+|+|+|||+.+......+. ..+.+++++. +.+..+.++...+.+..+ +.... ...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g-l~~~~------------~~~~ 170 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ-APLEV------------CYTK 170 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT-CCCCB------------CSSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC-CCeEe------------cCCH
Confidence 356899999999999987655554554 3566666654 333333333333222111 11000 0134
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcC---CCCcEEEEeeecCChHHHHHH
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP---KEVCIVMLSATVPNTLEFADW 229 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~ 229 (419)
..+...+.. +.+.+++|+|.+-... .....+..+...+. ....++.+.||.. ..++.++
T Consensus 171 ~~l~~al~~----~~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~~~~~~~lVl~at~~-~~~~~~~ 232 (296)
T 2px0_A 171 EEFQQAKEL----FSEYDHVFVDTAGRNF--KDPQYIDELKETIPFESSIQSFLVLSATAK-YEDMKHI 232 (296)
T ss_dssp HHHHHHHHH----GGGSSEEEEECCCCCT--TSHHHHHHHHHHSCCCTTEEEEEEEETTBC-HHHHHHH
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhcCCCeEEEEEECCCC-HHHHHHH
Confidence 444433332 3578999999665442 22334444444443 2223566666643 3344443
No 207
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.13 E-value=0.15 Score=44.31 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=36.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHH-HhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIAL-SQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~-~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
.|.-+++.|++|+|||..++-.+.. ..+.+..++++.- ..-..++..++.....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~-E~~~~~~~~~~~~~~~ 83 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL-EERARDLRREMASFGW 83 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES-SSCHHHHHHHHHTTTC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc-cCCHHHHHHHHHHcCC
Confidence 5689999999999999765544433 3444566777663 3446667777665543
No 208
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.99 E-value=0.16 Score=47.04 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=24.9
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+..|..+++++|||||||+..-. +..........+.+-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~-l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKA-LMQEIPFDQRLITIE 209 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHH-HHTTSCTTSCEEEEE
T ss_pred HhcCCEEEEECCCCCCHHHHHHH-HHhcCCCCceEEEEC
Confidence 46899999999999999976332 222333334445444
No 209
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=90.91 E-value=0.022 Score=60.44 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=45.6
Q ss_pred HHHHH-HHHHHHHHHhcCCcCCCCchhhHHHHHHHhhhhhhccCCCCh--------------hhHHHHHHHHhcCc
Q psy2764 357 EKSKI-HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILP--------------ILKEIVEMLFQKGL 417 (419)
Q Consensus 357 ~~~~~-~~~r~~~l~~f~~g~~~~~~~vlv~t~~l~~GIDi~~~~l~~--------------~~r~~ie~~f~~g~ 417 (419)
+|+.+ ..+|..+++.|++|.. +|||||+++++|||+|.+++.. ....+++...|.|+
T Consensus 412 ~Hggl~~~eR~~ve~~F~~G~i----kVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 412 HHSGLLPILKEVIEILFQEGFL----KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp ESTTSCHHHHHHHHHHHHTTCC----SEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCC
T ss_pred ECCCCCHHHHHHHHHHHhcCCC----cEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhccc
Confidence 34444 7889999999999999 9999999999999999876532 34677777777765
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.83 E-value=1.2 Score=46.07 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCChhHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~ 106 (419)
.++.+++.+|+|+|||+++-
T Consensus 237 ~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 46789999999999997643
No 211
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.73 E-value=0.21 Score=55.31 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=61.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcH---
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT--- 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp--- 163 (419)
.|+.+.+.+|.|||||+.++..+...++.+..++++.+-.+|-... +++++-++ .+++++-|
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~------------~~l~~~~p~~~ 1494 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI------------DNLLCSQPDTG 1494 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCG------------GGCEEECCSSH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCH------------HHeEEeCCCcH
Confidence 4578999999999999998888888899999999999987776665 44443221 12555555
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
+..+.....- ..-..+++||||.+-.+..
T Consensus 1495 e~~l~~~~~~-~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1495 EQALEICDAL-ARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp HHHHHHHHHH-HHHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHHHH-HHcCCCCEEEEccHHhCCc
Confidence 3222211110 0112478999999997754
No 212
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.69 E-value=0.18 Score=46.98 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=25.7
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS 123 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~ 123 (419)
+..|..+++++|||||||+..-..+-..... ..+++++-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 3567889999999999998744433333332 45565543
No 213
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.48 E-value=0.29 Score=39.84 Aligned_cols=35 Identities=23% Similarity=0.098 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.-+.+.+++|||||+.....+..+...+.++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 35788999999999876666666656666665555
No 214
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.46 E-value=0.28 Score=41.53 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHH
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~ 106 (419)
+.-|..++..+..|..+.+.+|.|+|||+.+-
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 55677888889999999999999999998643
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.31 E-value=0.34 Score=53.70 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=53.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc---cceEeccceecCCCcEEEEcH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD---VGLVTGDFQINTTASCLVMTT 163 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~---~~~~~g~~~~~~~~~Iiv~Tp 163 (419)
.+..+++.+|+|+|||..+...+......+.+++|+.-.... .+.. +.++... +-+. .+ .|.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~-~~l~--~~~lg~dl~~i~i~--------~p----~t~ 97 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDIDNLLCS--------QP----DTG 97 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCGGGCEEE--------CC----SSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCcc-HHHH--HHhhccCccceeee--------cc----CcH
Confidence 468999999999999987666666556678889998754333 2222 2222111 1111 01 134
Q ss_pred HHHHHHHhcCCCCCCCccEEEEeCCcccCC
Q psy2764 164 EILRSMLYRGSDVLRDLEYVIFDEVHYIND 193 (419)
Q Consensus 164 ~~l~~~~~~~~~~l~~~~~lIiDE~h~l~~ 193 (419)
+.+..++..- ....+.++||||++..+..
T Consensus 98 e~l~~ll~~L-~~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 98 EQALEICDAL-ARSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HHHHHHHHHH-HHHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHHHH-HhccCCCEEEEcchhhhcc
Confidence 4444333210 0114578999999997754
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.26 E-value=0.23 Score=45.84 Aligned_cols=42 Identities=29% Similarity=0.235 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
.|.-+++.+|+|+|||+.+...+..+...+.+++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 357899999999999987666666666677788888765444
No 217
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.21 E-value=0.29 Score=45.11 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt 125 (419)
.|.-+++.+|+|+|||..+...+......+.+++++.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 467899999999999987666666666677888888744
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.20 E-value=0.22 Score=46.08 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=24.4
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc-CCCeEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN-HKTRTIYTS 123 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~-~~~~~lii~ 123 (419)
..+..+++.||||||||+..-..+-.+.. .+..++.+-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 46668999999999999864333333332 245555444
No 219
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.13 E-value=0.26 Score=44.43 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
++.+++.+|+|+|||+.+......+...+.+++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346889999999999876555555555566666654
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.00 E-value=0.19 Score=41.34 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCChhHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~ 107 (419)
.|+-++++||+|+|||+..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577899999999999976433
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.99 E-value=0.35 Score=43.62 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+..+.+.+|+|+|||+............+.++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4678889999999999875554444444556666654
No 222
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.89 E-value=0.31 Score=40.16 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.+..+++.++.|||||+.+-.+...+...+..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 467899999999999988666555555556666555
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.89 E-value=0.33 Score=41.47 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=25.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
++++.++.|+|||..++-....+...+.+++++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 6899999999999876655555556676665443
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.77 E-value=0.33 Score=44.82 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=31.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~ 126 (419)
.+..+++.+++|+|||..++..+......+.+++++..-.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5678999999999999887666666666777888887643
No 225
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.55 E-value=0.19 Score=45.91 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=24.9
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
+..|+.+.+.+|||||||+..- .+.-........+.+-.
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~-~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIK-SIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHH-HGGGGSCTTSCEEEEES
T ss_pred ccCCCEEEEECCCCCCHHHHHH-HHhCCCcCCCcEEEECC
Confidence 3688999999999999997522 23233333344444443
No 226
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.27 E-value=0.34 Score=44.07 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
++.+.+.+++|+|||+.+......+...+.+++++-
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 346888999999999876655555555677777764
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.25 E-value=0.2 Score=45.73 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~ 107 (419)
.++.++|+||||+|||.++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 345799999999999976433
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.19 E-value=0.3 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..+.+++.||+|||||+.+-..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHH
Confidence 3579999999999999764433
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.14 E-value=0.3 Score=40.83 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=20.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
..++.+++.||+|||||+++-.+.-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999876554433
No 230
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.91 E-value=0.37 Score=43.41 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.|..+.+.+|+|+|||+........+...+.++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3557889999999999875444444444566666654
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.76 E-value=0.27 Score=41.47 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCChhHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~ 106 (419)
.|+-+++.||+|+|||+.+-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57789999999999997643
No 232
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.75 E-value=0.24 Score=41.46 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~ 105 (419)
.++-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4677999999999999653
No 233
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.70 E-value=0.72 Score=44.42 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=41.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD 142 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~ 142 (419)
.+....+.+-||||||++..-.+ ...+..+|||+|+...|.|+++.++.+++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~---~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA---ERHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH---HHSSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH---HHhCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 45678999999999996522222 223556999999999999999999998754
No 234
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.69 E-value=0.7 Score=37.99 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=25.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L 128 (419)
.+++.|+.|||||+.+-.+...+...+..+.++ |+-++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECChH
Confidence 578999999999988666555554445445555 54443
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.52 E-value=0.27 Score=41.13 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.|+-+.++||+|+|||+..-..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5778999999999999864333
No 236
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.51 E-value=0.45 Score=39.79 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=23.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCC
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKT 117 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~ 117 (419)
..+..+.+.||+|||||+++-.+...+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~ 54 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGK 54 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 46788999999999999876555444433343
No 237
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.49 E-value=0.39 Score=41.52 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=24.8
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTS 123 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii~ 123 (419)
..|.-+.+.+|+|+|||+.+-..+.... ..+..++++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4788999999999999986443332122 3344455554
No 238
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.10 E-value=0.53 Score=42.10 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=26.8
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS 123 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~ 123 (419)
..|.-+++.||+|+|||+.+...+...... +..++++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 578899999999999998654444433333 54677764
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.07 E-value=0.26 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
++-+++.||||+|||..+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHH
Confidence 346789999999999764433
No 240
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.04 E-value=0.39 Score=39.41 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+.+++.|++|||||+++-.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999987655443
No 241
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.93 E-value=0.54 Score=42.24 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEE
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 121 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~li 121 (419)
..+++.||+|+|||.++-.....+...+...+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~ 80 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 80 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence 479999999999998765544444333333333
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.87 E-value=0.33 Score=40.60 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
..|+-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 47889999999999999763
No 243
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.81 E-value=2.1 Score=35.43 Aligned_cols=81 Identities=14% Similarity=0.001 Sum_probs=56.5
Q ss_pred CCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHH
Q psy2764 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEIL 166 (419)
Q Consensus 98 GsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l 166 (419)
...|... ++..+...+.++||.++++.-+..+.+.+.+..-.+..++|+.+. ....+|+|+|.-
T Consensus 39 ~~~K~~~---L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-- 113 (191)
T 2p6n_A 39 EEAKMVY---LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-- 113 (191)
T ss_dssp GGGHHHH---HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH--
T ss_pred hHHHHHH---HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc--
Confidence 3456532 223334456789999999999999999999887777888887642 235789999941
Q ss_pred HHHHhcCCCCCCCccEEEEeC
Q psy2764 167 RSMLYRGSDVLRDLEYVIFDE 187 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIiDE 187 (419)
+ .....++.++++|.=+
T Consensus 114 ---~-~~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 114 ---A-SKGLDFPAIQHVINYD 130 (191)
T ss_dssp ---H-HTTCCCCCCSEEEESS
T ss_pred ---h-hcCCCcccCCEEEEeC
Confidence 2 2334677888887633
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.76 E-value=0.33 Score=40.62 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~ 107 (419)
..|.-+.+.||+|||||+.+-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 4678899999999999986433
No 245
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.64 E-value=0.49 Score=43.15 Aligned_cols=125 Identities=10% Similarity=0.147 Sum_probs=63.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc-cc-HHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS-PI-KALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTE 164 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~-Pt-~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~ 164 (419)
.+.-+.+++|+|+|||+........+...+.++++.. ++ +.-+.++...+.+..+ +.++...... .|.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g-v~~v~q~~~~---------~p~ 197 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG-VKVIKHSYGA---------DPA 197 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT-CEEECCCTTC---------CHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC-ceEEeccccC---------CHH
Confidence 4568899999999999875544444444555665553 33 2223333333322211 1122211111 121
Q ss_pred -HHHHHHhcCCCCCCCccEEEEeCCcccC-CCcchHHHHHHHHhcCCCCcEEEEeeecCCh
Q psy2764 165 -ILRSMLYRGSDVLRDLEYVIFDEVHYIN-DSERGHVWEEVLILLPKEVCIVMLSATVPNT 223 (419)
Q Consensus 165 -~l~~~~~~~~~~l~~~~~lIiDE~h~l~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 223 (419)
.+...+... .....+++++|.+.... +......+..+.+.+..+..++.+.|+....
T Consensus 198 ~~v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~ 256 (328)
T 3e70_C 198 AVAYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA 256 (328)
T ss_dssp HHHHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH
T ss_pred HHHHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH
Confidence 111111110 01245688999988653 2234444555555566677788888887643
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.32 E-value=0.69 Score=39.69 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~P 124 (419)
.|.-+.+.+|+|+|||..+...+..... .+..++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 5789999999999999865444433222 2466777754
No 247
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.27 E-value=0.52 Score=43.52 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+..+.+++|+|+|||+........+...+.++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 457889999999999875444444444556666654
No 248
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.03 E-value=0.38 Score=40.21 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~ 107 (419)
..|..+.+.||+|||||+.+-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4678899999999999976443
No 249
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.74 E-value=0.53 Score=42.35 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=25.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
..|+.+.+++|+|+|||+.+-.++-.. ...++..+|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~ 159 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFAN 159 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEec
Confidence 578899999999999998644433333 455654443
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.67 E-value=0.43 Score=43.06 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=53.7
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcC--CCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEc---HH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNH--KTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMT---TE 164 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~--~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~T---p~ 164 (419)
.+++.+|+|+|||..++-.+...++. +.+++++..-.++-.. +++++.-+. .++++.. .+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~------------d~llv~~~~~~E 94 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDP------------ERVIHTPVQSLE 94 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCG------------GGEEEEECSBHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCH------------HHeEEEcCCCHH
Confidence 68999999999998877666655554 7889998876665432 344443221 1244443 33
Q ss_pred HH-HHHHhcC-CCCCCCccEEEEeCCcccC
Q psy2764 165 IL-RSMLYRG-SDVLRDLEYVIFDEVHYIN 192 (419)
Q Consensus 165 ~l-~~~~~~~-~~~l~~~~~lIiDE~h~l~ 192 (419)
.+ +..+..- ...-..+++||||-+..+.
T Consensus 95 ~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 95 QLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 33 3222110 0122368999999999774
No 251
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.56 E-value=0.38 Score=43.28 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
.-++++||||+|||..+..+
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 35788999999999764443
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.55 E-value=0.66 Score=38.79 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.+.-+.+.+++|||||+.+-...-.+...+..++++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 345788999999999987554443333334444443
No 253
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.51 E-value=2.4 Score=33.90 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=51.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEE
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~l 183 (419)
.+.++||.++++.-+..++..+.+....+..++|+.+. .....|+|+|. .......++.++++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~~~V 102 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQVSLV 102 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccCCEE
Confidence 56789999999999999999999877677788887542 23478999993 11233567788888
Q ss_pred EEeCC
Q psy2764 184 IFDEV 188 (419)
Q Consensus 184 IiDE~ 188 (419)
|.-+.
T Consensus 103 i~~~~ 107 (165)
T 1fuk_A 103 INYDL 107 (165)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 76443
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.37 E-value=0.47 Score=41.48 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i 109 (419)
.+++.||||||||+.+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999998654443
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.35 E-value=0.48 Score=38.31 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+..+.+.||.|||||+++-..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3568999999999999874443
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.27 E-value=0.39 Score=39.65 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
..|..+++.||+|||||+.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 46788999999999999763
No 257
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.23 E-value=0.81 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
...++++.+|+|+|||.++-...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999999999998754443
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.20 E-value=0.48 Score=39.71 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=19.9
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
+..++-++++||+|+|||+.+-.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999998654433
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=86.16 E-value=0.49 Score=40.25 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=17.6
Q ss_pred HhcCCcEEEEcCCCCChhHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~ 106 (419)
+..|+-+.++||+|+|||+..-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3578999999999999997643
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.06 E-value=0.49 Score=38.48 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
+..++++|++|||||+++-.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999998754443
No 261
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.96 E-value=0.78 Score=37.40 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l 120 (419)
.|..+++.++.|||||+++-.+...+...+..++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 4678899999999999875554443332343344
No 262
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.83 E-value=0.49 Score=45.83 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChhHHH
Q psy2764 79 KQAIIKLEEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 79 ~~ai~~~~~~~~~iv~apTGsGKT~~~ 105 (419)
..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344445578899999999999999754
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.80 E-value=0.65 Score=41.64 Aligned_cols=121 Identities=7% Similarity=0.052 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
+..+.+.+++|+|||+.+......+...+.+++++. +.+..+.++...+... .++.++.+... ..|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~-~~v~v~~~~~~---------~~p~~ 167 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQ-IGVPVYGEPGE---------KDVVG 167 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHH-HTCCEECCTTC---------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhcc-CCeEEEecCCC---------CCHHH
Confidence 346778999999999876655555555666777665 2333333332222221 11222322110 23443
Q ss_pred HH-HHHhcCCCCCCCccEEEEeCCcccC--CCc-chHHHHHHHHhcCCCCcEEEEeeec
Q psy2764 166 LR-SMLYRGSDVLRDLEYVIFDEVHYIN--DSE-RGHVWEEVLILLPKEVCIVMLSATV 220 (419)
Q Consensus 166 l~-~~~~~~~~~l~~~~~lIiDE~h~l~--~~~-~~~~~~~i~~~~~~~~~~l~~SAT~ 220 (419)
+. ..+... ...+++++|||=+-.+. ... .-..+..+........-++.+.|+.
T Consensus 168 ~~~~~l~~~--~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 168 IAKRGVEKF--LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp HHHHHHHHH--HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHH--HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 32 222211 01467899999987653 110 1111222333344444556666664
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.68 E-value=0.78 Score=38.55 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.|.-+.+.+|+|||||+.+-.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4668889999999999864433
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.65 E-value=0.71 Score=41.36 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.++.+.+.+++|+|||+.+......+...+.+++++-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3557788899999999876655555555566777664
No 266
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=85.64 E-value=0.69 Score=43.90 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=61.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
+.+++++++|+|||+++.-....+... +.+++++. |.+..+.++...+... .++.++.++.. .+|..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~-~~l~v~~~~~~---------~dp~~ 170 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQ-VGVDFFPSDVG---------QKPVD 170 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHH-HTCEECCCCSS---------SCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhccc-CCeeEEeCCCC---------CCHHH
Confidence 467788999999999877666666666 78888766 4454444433322211 11222222211 13444
Q ss_pred H-HHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 166 L-RSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 166 l-~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
+ ...+... ...+++++|||=+-.+... .....+..+.....+..-++.+.|+..
T Consensus 171 i~~~~l~~~--~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g 226 (433)
T 2xxa_A 171 IVNAALKEA--KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG 226 (433)
T ss_dssp HHHHHHHHH--HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC
T ss_pred HHHHHHHHH--HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh
Confidence 3 2222211 0135789999987654211 111222233233333344444566643
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.62 E-value=0.53 Score=38.83 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~ 107 (419)
++-+.+.||+|+|||+..-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35678999999999976433
No 268
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.59 E-value=0.89 Score=37.14 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCe
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTR 118 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~ 118 (419)
.-+++.+++|+|||+.....+..+...+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~ 36 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIR 36 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCc
Confidence 467899999999998654444444444433
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.59 E-value=0.55 Score=38.65 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+..+++.|+.|||||+++-.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999875443
No 270
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.58 E-value=0.7 Score=44.44 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
|..+.++||+|+|||+..-.+...+...+.++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 45788999999999987554444444556677776
No 271
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.55 E-value=0.68 Score=37.77 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
..++.+++.|++|||||+++-.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 356789999999999998755443
No 272
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.52 E-value=0.49 Score=44.91 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=26.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
..+++++++|+|||+.+.-....+...+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 37889999999999876666555555567777765
No 273
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.43 E-value=3.2 Score=34.05 Aligned_cols=81 Identities=12% Similarity=0.036 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceec-----------CCCcEEEEcHHHH
Q psy2764 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQIN-----------TTASCLVMTTEIL 166 (419)
Q Consensus 98 GsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~-----------~~~~Iiv~Tp~~l 166 (419)
.+.|-... .-+......+.++||.++++.-+..+.+.+......+..++|+.+.. ....|+|+|. .+
T Consensus 29 ~~~K~~~L-~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~ 106 (185)
T 2jgn_A 29 ESDKRSFL-LDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA 106 (185)
T ss_dssp GGGHHHHH-HHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHHHH-HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh
Confidence 45676432 22222233578899999999999999999998766777888876432 2478999993 22
Q ss_pred HHHHhcCCCCCCCccEEEE
Q psy2764 167 RSMLYRGSDVLRDLEYVIF 185 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIi 185 (419)
.....++.++++|.
T Consensus 107 -----~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 107 -----ARGLDISNVKHVIN 120 (185)
T ss_dssp ---------CCCSBSEEEE
T ss_pred -----hcCCCcccCCEEEE
Confidence 22345677888776
No 274
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.41 E-value=0.8 Score=38.57 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHHHHHHHHHHh-cCCCeEEEE
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYT 122 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~~~~~i~~~~-~~~~~~lii 122 (419)
++.+... ..+..+..+++.|+.|||||+.+-.+...+. ..+..++++
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 4455554 3356778899999999999987655443332 234334444
No 275
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.37 E-value=0.79 Score=42.04 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEcccHHH-HHHHHHHHHHh
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPIKAL-SNQKYRDFRET 139 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~Pt~~L-~~q~~~~~~~~ 139 (419)
.|.-+++.||+|+|||..+...+..... .+.+++++.-...+ ..++...+.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 4568899999999999875554444333 36788888754432 34444444443
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.35 E-value=0.86 Score=37.36 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
++..+++.|+.|||||+.+-.+...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999987655544443
No 277
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.28 E-value=3.1 Score=42.69 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~ 105 (419)
.+.+++.+|.|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 468999999999999653
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.26 E-value=0.57 Score=39.36 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHhcCCcEEEEcCCCCChhHHH
Q psy2764 84 KLEEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 84 ~~~~~~~~iv~apTGsGKT~~~ 105 (419)
.+..|+-+.+.+|+|+|||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5678999999999999999764
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=85.23 E-value=0.57 Score=39.93 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEcCCCCChhHHHH
Q psy2764 84 KLEEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 84 ~~~~~~~~iv~apTGsGKT~~~~ 106 (419)
.+..|+-++++||+|+|||+..-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHH
Confidence 35688999999999999998643
No 280
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.22 E-value=0.37 Score=39.21 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~ 105 (419)
.|.-+.+.||+|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 5778899999999999763
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.20 E-value=0.81 Score=43.25 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc--ccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS--PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEI 165 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~--Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~ 165 (419)
++.+.+.+++|+|||+.+......+...+.+++++. +.+..+.++...+... .++.++..+.. ..|..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~-~gv~v~~~~~~---------~~p~~ 167 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK-VGVPVLEVMDG---------ESPES 167 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHH-HTCCEEECCTT---------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhccc-CCccEEecCCC---------CCHHH
Confidence 346778899999999886666666666677777765 4445444333332221 11223332211 13433
Q ss_pred H-HHHHhcCCCCCCCccEEEEeCCcccCCC-cchHHHHHHHHhcCCCCcEEEEeeecC
Q psy2764 166 L-RSMLYRGSDVLRDLEYVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVP 221 (419)
Q Consensus 166 l-~~~~~~~~~~l~~~~~lIiDE~h~l~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~ 221 (419)
+ ...+... ....++++|||=+-.+... ..-..+..+...+.+..-++.+.|+..
T Consensus 168 i~~~~l~~~--~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 168 IRRRVEEKA--RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp HHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHHHHHH--HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch
Confidence 3 2222211 0145789999977654321 112223333444444444666777644
No 282
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.10 E-value=0.48 Score=38.19 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
..+++.||+|||||+++-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35789999999999875444
No 283
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=84.98 E-value=3.6 Score=32.77 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=51.7
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccE
Q psy2764 114 NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEY 182 (419)
Q Consensus 114 ~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~ 182 (419)
..+.++||.++++.-+..+.+.+.+....+..++|+.+. ....+|+|+|. . + .....++.+++
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-V----A-ARGIDIENISL 106 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-G----G-TTTCCCSCCSE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-h----h-hcCCchhcCCE
Confidence 356789999999999999999999887778888887642 23478999993 1 1 33456778888
Q ss_pred EEEeCC
Q psy2764 183 VIFDEV 188 (419)
Q Consensus 183 lIiDE~ 188 (419)
+|.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 886443
No 284
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.97 E-value=0.56 Score=42.66 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHhcCCcEEEEcCCCCChhHHHHH
Q psy2764 82 IIKLEEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 82 i~~~~~~~~~iv~apTGsGKT~~~~~ 107 (419)
...+..+.++++.||+|+|||..+-.
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHHH
Confidence 33456788999999999999976443
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.89 E-value=0.93 Score=38.46 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=25.9
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEccc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPI 125 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~Pt 125 (419)
..|.-+.+.+|+|+|||+.+...+..... ....++++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 36789999999999999764443332222 24556666543
No 286
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=84.72 E-value=3.9 Score=34.31 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred CCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHH
Q psy2764 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEIL 166 (419)
Q Consensus 98 GsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l 166 (419)
...|..+..- + .....+.++||.++++.-++.+.+.+.+....+..++|+.+. ....+|+|+|.
T Consensus 15 ~~~k~~~l~~-l-l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~--- 89 (212)
T 3eaq_A 15 VRGRLEVLSD-L-LYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD--- 89 (212)
T ss_dssp TTSHHHHHHH-H-HHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT---
T ss_pred HHHHHHHHHH-H-HHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC---
Confidence 3566643222 2 223457789999999999999999999887778888887642 23478999994
Q ss_pred HHHHhcCCCCCCCccEEEE
Q psy2764 167 RSMLYRGSDVLRDLEYVIF 185 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIi 185 (419)
.......++.+++||.
T Consensus 90 ---~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 ---VAARGLDIPQVDLVVH 105 (212)
T ss_dssp ---TTTCSSSCCCBSEEEE
T ss_pred ---hhhcCCCCccCcEEEE
Confidence 1234456778888774
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.70 E-value=0.75 Score=38.36 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+..+++.||.|||||+.+-.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998754443
No 288
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.68 E-value=0.9 Score=41.16 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=33.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh------------cCC----CeEEEEcccHHH-HHHHHHHHHHh
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ------------NHK----TRTIYTSPIKAL-SNQKYRDFRET 139 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~------------~~~----~~~lii~Pt~~L-~~q~~~~~~~~ 139 (419)
.|.-+++.+|+|+|||..+...+.... ..+ .+++|+.--..+ ..++...+.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 457899999999999986555444321 123 678887754433 45555555554
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.49 E-value=0.53 Score=42.64 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i 109 (419)
+.++++||||||||.++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998654443
No 290
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.41 E-value=0.93 Score=39.68 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
...+++.|+.|||||+.+-.+...+...+..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 45789999999999987655544443345545444
No 291
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.38 E-value=0.59 Score=41.70 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCChhHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~ 107 (419)
.++.+++.||+|+|||+.+-.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 367999999999999976443
No 292
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.34 E-value=0.91 Score=41.12 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhHH
Q psy2764 90 HVFVTAHTSAGKTVI 104 (419)
Q Consensus 90 ~~iv~apTGsGKT~~ 104 (419)
-+++.++.|+|||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 578999999999976
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.23 E-value=0.69 Score=38.27 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCChhHH
Q psy2764 89 NHVFVTAHTSAGKTVI 104 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~ 104 (419)
+-++++||+|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999965
No 294
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.22 E-value=0.75 Score=41.13 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
...++++.||+|+|||.++-.....
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999765444333
No 295
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.16 E-value=0.61 Score=42.59 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~ 110 (419)
.-++|+||||||||..+..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3688999999999987544433
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.12 E-value=1.2 Score=37.28 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=25.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEE
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l 120 (419)
..+..+++.|+.|||||+++-.+...+...+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 35678999999999999886666555444444443
No 297
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.94 E-value=1.2 Score=36.79 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=21.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEE
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l 120 (419)
-+++.|+.|||||+.+-...-.+...+..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3789999999999886665555544455444
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.86 E-value=0.81 Score=36.80 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=16.2
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i 109 (419)
.+++.|+.|||||+++-.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999998755443
No 299
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.85 E-value=1.7 Score=35.16 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=50.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEE
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~l 183 (419)
...++||.++++..+..++..+.+....+..++|+.+. ....+|+|+|. .......++.++++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCCEE
Confidence 46789999999999999999999887778888887642 23478999993 11234567788888
Q ss_pred EEeC
Q psy2764 184 IFDE 187 (419)
Q Consensus 184 IiDE 187 (419)
|.-+
T Consensus 107 i~~d 110 (175)
T 2rb4_A 107 VNFD 110 (175)
T ss_dssp EESS
T ss_pred EEeC
Confidence 8543
No 300
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.84 E-value=0.56 Score=38.52 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=25.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 137 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~ 137 (419)
++|.+++|||||..+.-. ... +..+++++.....-.++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~l---a~~-~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEAL---IGD-APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHH---HCS-CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHH---Hhc-CCCeEEEecCCCCCHHHHHHHH
Confidence 689999999999754332 233 5678888876554444444443
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.80 E-value=0.5 Score=38.75 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.|..+++.|+.|||||+.+-.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999998755544
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.77 E-value=1.8 Score=36.08 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=21.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCC
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHK 116 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~ 116 (419)
.+..+++.|+.|||||+.+-.+...+...+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 456789999999999988666555443333
No 303
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.34 E-value=0.63 Score=38.99 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=15.7
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i 109 (419)
-.++.|+.|||||+.+...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999998654433
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.29 E-value=0.65 Score=37.66 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+..+++.+|.|||||+.+-..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999875443
No 305
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.22 E-value=0.73 Score=40.15 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.||+|+|||+.+-..
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 467999999999999765433
No 306
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.99 E-value=1.4 Score=36.78 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=23.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRT 119 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~ 119 (419)
.+..+++.|+.|||||+++-.+...+...+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 467899999999999998666554443344444
No 307
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=82.98 E-value=1 Score=37.12 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.7
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
+..+..+++.|+.|||||+++-.+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 346678999999999999876554433
No 308
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.83 E-value=0.79 Score=42.84 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i 109 (419)
-++|.||||+|||.++..+.
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 57899999999997654443
No 309
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.55 E-value=1.4 Score=37.21 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=27.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.|.-+++.|+.|+|||+.+..+...+...+..++.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4677899999999999988766666665556555443
No 310
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.40 E-value=2 Score=39.75 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=23.0
Q ss_pred EcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 94 TAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 94 ~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+.-|.|||+++.-....+...+.+++++=
T Consensus 150 s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 150 SPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 457899999987776666666688888875
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.27 E-value=0.79 Score=37.17 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.3
Q ss_pred cEEEEcCCCCChhHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~ 108 (419)
.+++.|++|||||+.+-.+
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5789999999999865443
No 312
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.16 E-value=0.85 Score=38.31 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=20.1
Q ss_pred HHHHHHHhcC----CcEEEEcCCCCChhHHHHHH
Q psy2764 79 KQAIIKLEEH----NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 79 ~~ai~~~~~~----~~~iv~apTGsGKT~~~~~~ 108 (419)
..++..+.++ ..+++.+|.|+|||..+...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHH
Confidence 3444444333 36999999999999764333
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.10 E-value=0.6 Score=39.97 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=13.7
Q ss_pred hcCCcEEEEcCCCCChhHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~ 106 (419)
..|.-+.+.||+|+|||+++-
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEECSCC----CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999997643
No 314
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=82.00 E-value=1.1 Score=36.98 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=20.4
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
+..+..+++.|++|||||+++-.+.-.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999876554433
No 315
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=81.96 E-value=2.5 Score=45.64 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=43.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhc---CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQN---HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILR 167 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~---~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~ 167 (419)
-+|.|..|||||.+.+.-+..+.. .+.++++|||...-- ++..++.+..+. .....+-|+|..++.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TF-t~~~rl~~~l~~----------~~~~~~~V~TFhsla 72 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTF-LMEYELAKTPDM----------GGMIRAQVFSFSRLA 72 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHH-HHHHHHTCCSSC----------SEESSEEEECHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccH-HHHHHHHHhhhh----------cceeeeEEecHHHHH
Confidence 378999999999886655554432 347899999987433 344444433221 011357788887776
Q ss_pred HHHh
Q psy2764 168 SMLY 171 (419)
Q Consensus 168 ~~~~ 171 (419)
..+.
T Consensus 73 ~~il 76 (1166)
T 3u4q_B 73 WRVL 76 (1166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 316
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.63 E-value=1.3 Score=38.60 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
.++.+++.++.|||||+++-.+.-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987554443
No 317
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=81.61 E-value=0.9 Score=42.18 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
...++++.||+|+|||.++-...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 35689999999999997754433
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.40 E-value=1 Score=37.01 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+..+++.|+.|||||+.+-.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999998765544333
No 319
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=81.30 E-value=0.55 Score=39.49 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=21.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEE
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l 120 (419)
-+++.|+.|||||+.+-.+...+...+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4789999999999876655555544444443
No 320
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.30 E-value=1.2 Score=35.82 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=18.9
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+++++.++.|||||+++-.+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999998866554433
No 321
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.12 E-value=1.7 Score=38.15 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred cHHHHH-HHHHHhcCC-----cEEEEcCCCCChhHHHH
Q psy2764 75 DVFQKQ-AIIKLEEHN-----HVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 75 ~~~Q~~-ai~~~~~~~-----~~iv~apTGsGKT~~~~ 106 (419)
.+++-. ++..+++++ .+++.||.|+|||+.+.
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 345533 345555443 59999999999997643
No 322
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.04 E-value=1.7 Score=42.44 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=34.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~ 138 (419)
..|..+++.+|+|+|||+.+...+......+.+++++++-.. ..|+...+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~ 330 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYS 330 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHH
Confidence 467899999999999998755444444445667777775432 3355555443
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=80.96 E-value=1.7 Score=35.65 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=21.1
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEE
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~l 120 (419)
.+++.|+.|||||+++-.....+...+..++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4789999999999886655544433344343
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=80.88 E-value=1.2 Score=36.00 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
+.+++.++.|||||+++-.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999876554433
No 325
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.85 E-value=1.3 Score=42.95 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=27.4
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.+++++++|+|||+.+.-++..+...+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 68889999999998876666666666777777764
No 326
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=80.83 E-value=1.6 Score=39.67 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
..-+++.+..|.|||+++......+.+.+.+++++-
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345677889999999988777777777888888874
No 327
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=80.75 E-value=1.5 Score=39.69 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.-++..+..|.|||+++......+...+.+++++-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 46677889999999988777776767788888876
No 328
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=80.74 E-value=3.2 Score=37.56 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=15.4
Q ss_pred cEEEEcCCCCChhHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~ 108 (419)
-+.+.||+|||||+.+-..
T Consensus 94 iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999875443
No 329
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.65 E-value=0.76 Score=37.83 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
..+++.+|+|+|||+.+-.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45789999999999864443
No 330
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=80.64 E-value=1.8 Score=36.60 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=25.6
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
+....+|.|||+++.-....+.+.+.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 344458999999887777777778889998755
No 331
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.40 E-value=2 Score=41.00 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
++++++.+|+|+|||..+......
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999875444333
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.38 E-value=0.95 Score=37.95 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.-+.+.||+|||||+.+-..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999874433
No 333
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.32 E-value=0.72 Score=39.75 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|||||+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3789999999999999975
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.23 E-value=1.7 Score=39.01 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+.-+.+.||+|||||+.+-...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44578899999999998754433
No 335
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.21 E-value=1.4 Score=37.27 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+..+++.|+.|||||+.+-.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999998765554433
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.06 E-value=1.2 Score=36.66 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
+..+++.|++|||||+.+-.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998755443
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.05 E-value=1.2 Score=36.97 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
...+++.|+.|||||+++-.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999998755443
No 338
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=79.87 E-value=2 Score=40.18 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhc------CCCeEEEEccc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQN------HKTRTIYTSPI 125 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~------~~~~~lii~Pt 125 (419)
.|.-+.+.+|+|+|||..+...+..... .+..++++.-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4678999999999999865433333222 34668887643
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.71 E-value=0.99 Score=40.22 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
+.-++++||+|||||+.+-.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998754443
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.68 E-value=1.3 Score=36.87 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+..+++.|+.|||||+.+-.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999998755443
No 341
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.61 E-value=0.82 Score=40.81 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i 109 (419)
.-+.|.||+|||||+.+-...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467889999999998754443
No 342
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.59 E-value=1.5 Score=35.71 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~ 110 (419)
..+++.++.|||||+++-.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987655443
No 343
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=79.57 E-value=6.8 Score=39.33 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=59.0
Q ss_pred HHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce-----------ecCCCcEEEEcHHHHHHHHhcCCCCC
Q psy2764 109 IALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ-----------INTTASCLVMTTEILRSMLYRGSDVL 177 (419)
Q Consensus 109 i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~-----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l 177 (419)
+......+.++||.++|+.-++.+.+.+....-.+..++|+.. .....+|+|+|. .......+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDi 511 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDI 511 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCccc
Confidence 3344456789999999999999999999988666777788753 123578999984 12344567
Q ss_pred CCccEEEEeCCccc
Q psy2764 178 RDLEYVIFDEVHYI 191 (419)
Q Consensus 178 ~~~~~lIiDE~h~l 191 (419)
..++++|+-+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 88999999999865
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.56 E-value=1.3 Score=38.20 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
....+++.||.|||||+.+-.+.-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999987655543
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.55 E-value=1.5 Score=37.14 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
...+++.|+.|||||+.+-.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999998765554433
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.45 E-value=1.2 Score=37.88 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
....+++.|++|||||+.+-.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999998754443
No 347
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.43 E-value=1.5 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~ 107 (419)
.+.+.+|+|+|||+.+-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986433
No 348
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.41 E-value=1.1 Score=37.54 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCChhHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEY 107 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~ 107 (419)
..+..+.+.|++|||||+.+-.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3566788999999999976433
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.41 E-value=1.2 Score=38.68 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCChhHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~ 106 (419)
+.+++.+|+|+|||+.+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999997643
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=79.40 E-value=1.2 Score=37.75 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
+..+.+.||+|||||+++-...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999998755443
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=79.17 E-value=1.3 Score=36.07 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=19.3
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcC
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNH 115 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~ 115 (419)
+.+.+++++|||||+.....+..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 357789999999998765555554433
No 352
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.96 E-value=2.4 Score=35.75 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCC
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKT 117 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~ 117 (419)
+|.-+++.|+.|+|||+....+...+...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5778999999999999887666656655554
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=78.94 E-value=1.6 Score=36.16 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+..+++.|+.|||||+.+-.+...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999998765554333
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.88 E-value=1.6 Score=35.11 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
+.+++.++.|||||+++-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999876554433
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.88 E-value=1.4 Score=37.00 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=16.6
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+++.||.|||||+++-.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655433
No 356
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.64 E-value=4.3 Score=44.37 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEe
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~S 217 (419)
.+++.+++|+||+=.-+|......+...+..+.++.-++..|
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 356778999999987777665666655555444444444433
No 357
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=78.63 E-value=1.9 Score=39.63 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=27.2
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
-+++.+..|.|||+++......+...+.+++++-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4667788999999987777666667788888876
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.52 E-value=1.2 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.0
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i 109 (419)
.+++.||.|||||+++-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998755443
No 359
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.50 E-value=0.64 Score=40.75 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+++.||+|+|||..+-..
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 467999999999999765443
No 360
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=78.47 E-value=3.5 Score=44.54 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=39.8
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHh-c-----------CCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALSQ-N-----------HKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~~-~-----------~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
..+|.|.-|||||.+...-+..+. . ...++|+|+=|++-+.++.+++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 449999999999976444444443 2 235899999999999999999987653
No 361
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.46 E-value=2.3 Score=36.92 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
...+++.+..|+|||+.+.-....+. .+.+++++-
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 34678899999999987666555556 677777775
No 362
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=78.46 E-value=2 Score=42.53 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+-+++.+..|.|||+++......+...+.++++|-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 467888999999999988777777767788888865
No 363
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.44 E-value=2.2 Score=36.45 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIY 121 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~li 121 (419)
.|..+++.|+.|+|||+.+..+...+.. +..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 5678999999999999876555555544 444443
No 364
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.38 E-value=8.6 Score=38.61 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=58.2
Q ss_pred HHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccce-----------ecCCCcEEEEcHHHHHHHHhcCCCCC
Q psy2764 109 IALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ-----------INTTASCLVMTTEILRSMLYRGSDVL 177 (419)
Q Consensus 109 i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~-----------~~~~~~Iiv~Tp~~l~~~~~~~~~~l 177 (419)
+......+.++||.++|+..++.+.+.+....-.+..++|+.. .....+|+|||. .......+
T Consensus 432 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlDi 505 (664)
T 1c4o_A 432 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDI 505 (664)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCC
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCccC
Confidence 3344457889999999999999999999988766777788753 123578999983 11344567
Q ss_pred CCccEEEEeCCccc
Q psy2764 178 RDLEYVIFDEVHYI 191 (419)
Q Consensus 178 ~~~~~lIiDE~h~l 191 (419)
..++++|+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 88999999888865
No 365
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.38 E-value=1.6 Score=34.44 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhHHH
Q psy2764 89 NHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~ 105 (419)
.-.++.+|+|+|||.+.
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35789999999999763
No 366
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=78.35 E-value=2.6 Score=41.91 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=20.5
Q ss_pred HHhcCCcEEEEcCCCCChhHHHHHH
Q psy2764 84 KLEEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 84 ~~~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+..+..+++.+|+|+|||+.+-..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHH
Confidence 4578899999999999999865443
No 367
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=78.30 E-value=1.4 Score=35.93 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~ 106 (419)
-.++.+|+|+|||.++-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 67899999999998643
No 368
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.24 E-value=1.6 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.4
Q ss_pred cEEEEcCCCCChhHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~ 108 (419)
-.++.+|||+|||.++...
T Consensus 25 ~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6779999999999875433
No 369
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.08 E-value=3 Score=37.89 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
..+++.||+|+|||+.+-..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 68999999999999864443
No 370
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=78.08 E-value=0.93 Score=39.39 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+-+.+.+|+|+|||+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 371
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=78.04 E-value=1.2 Score=39.29 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|||||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4788999999999999975
No 372
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.01 E-value=2.7 Score=40.67 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
++.+++|.++||||||.+.-..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999987544444
No 373
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=78.01 E-value=1.7 Score=37.22 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=23.3
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHHHHhcC----CCeEEE
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNH----KTRTIY 121 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~~~~~~----~~~~li 121 (419)
+..|.-+++.|+.|+|||+.+..+...+... +..+++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~ 62 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV 62 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee
Confidence 4578899999999999998866655555443 555543
No 374
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=77.83 E-value=2 Score=36.64 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=24.4
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+..+..|.|||+++......+.+.+.+++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34567899999987777666666788888875
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.79 E-value=1.5 Score=38.18 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.3
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..+..+.+.+|+|||||+++-.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999874443
No 376
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.73 E-value=2.1 Score=48.29 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.1
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKY 133 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~ 133 (419)
..+.++++.+|+|+|||..+...+....+.+.+++|+. ..++.++++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ccccHHHHH
Confidence 36789999999999999987777777777899999986 556666666
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.64 E-value=0.94 Score=40.07 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|||||+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 378
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=77.62 E-value=0.93 Score=41.39 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
...++++.||+|+|||.++-..
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHH
Confidence 4568999999999999765443
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.48 E-value=1.9 Score=36.89 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+..+++.|++|||||+.+-.+...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999998765554443
No 380
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=77.45 E-value=2.8 Score=35.99 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCe
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR 118 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~ 118 (419)
.+.-+++.++.|+|||+.+..+...+...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 67899999999999998866666555555555
No 381
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=77.43 E-value=7.1 Score=34.84 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=56.2
Q ss_pred CCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceec-----------CCCcEEEEcHHHH
Q psy2764 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQIN-----------TTASCLVMTTEIL 166 (419)
Q Consensus 98 GsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~-----------~~~~Iiv~Tp~~l 166 (419)
...|-.+..- +. ....+.++||.++++.-++.+++.+.+....+..++|+.+.. ...+|+|+|.
T Consensus 12 ~~~K~~~L~~-ll-~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~--- 86 (300)
T 3i32_A 12 VRGRLEVLSD-LL-YVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD--- 86 (300)
T ss_dssp SSSHHHHHHH-HH-HHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS---
T ss_pred HHHHHHHHHH-HH-HhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec---
Confidence 3567644222 22 223478899999999999999999988776778888876432 3478999994
Q ss_pred HHHHhcCCCCCCCccEEEE
Q psy2764 167 RSMLYRGSDVLRDLEYVIF 185 (419)
Q Consensus 167 ~~~~~~~~~~l~~~~~lIi 185 (419)
+......+..+++||.
T Consensus 87 ---va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 87 ---VAARGLDIPQVDLVVH 102 (300)
T ss_dssp ---TTTCSTTCCCCSEEEE
T ss_pred ---hhhcCccccceeEEEE
Confidence 2234456788888875
No 382
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.34 E-value=5.9 Score=31.90 Aligned_cols=68 Identities=6% Similarity=-0.058 Sum_probs=50.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEE
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~l 183 (419)
.+.++||.++++.-+..+++.+.+....+..++|+.+. .....|+|+|. . ......++.++++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~-----~~~Gldi~~~~~V 103 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-L-----FGRGMDIERVNIA 103 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-C-----CSTTCCGGGCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-c-----hhcCcchhhCCEE
Confidence 56789999999999999999999887777888887642 23578999994 1 1233456778888
Q ss_pred EEeCC
Q psy2764 184 IFDEV 188 (419)
Q Consensus 184 IiDE~ 188 (419)
|.-+.
T Consensus 104 i~~d~ 108 (172)
T 1t5i_A 104 FNYDM 108 (172)
T ss_dssp EESSC
T ss_pred EEECC
Confidence 86443
No 383
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=77.32 E-value=2 Score=37.46 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=24.1
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+..+..|.|||+++.-....+...+.+++++=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567899999987777666666788888864
No 384
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=77.31 E-value=0.71 Score=41.58 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+.+.+++|+|+|||+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 4789999999999999976
No 385
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=77.16 E-value=2.4 Score=36.84 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=25.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+..+..|.|||+++......+...+.+++++=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345678899999987777666666788888874
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.08 E-value=1.9 Score=36.32 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
+..+++.++.|||||+.+-.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999998765554443
No 387
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=77.08 E-value=2.6 Score=38.44 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+-+++.+.-|.|||+++......+...+.+++++-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356788889999999988777777777788888876
No 388
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=77.06 E-value=1.9 Score=37.01 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.+++.-|.|||+++.-....+.+.+.++++|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45588999999999877777777778888887
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=76.82 E-value=2.5 Score=38.80 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=25.8
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
..+.+++++|+|||..+.-....+...+.++.++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 37889999999999876555555555667766665
No 390
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=76.76 E-value=1.1 Score=37.99 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|.|+|||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 391
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=76.70 E-value=3 Score=36.45 Aligned_cols=54 Identities=9% Similarity=-0.137 Sum_probs=36.0
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ 141 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~ 141 (419)
.|..+++.+.+|+|||+.++..+.....++.+++++.- .+-..++..+++.+.-
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~-~e~~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSI-SYPLQLIIRILSRFGV 73 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEEC-SSCHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEE-eCCHHHHHHHHHHcCC
Confidence 55688888677777775444444455567888888764 5566777777776643
No 392
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=76.69 E-value=2.8 Score=37.47 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=25.4
Q ss_pred CcEEEEcC-CCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 89 NHVFVTAH-TSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 89 ~~~iv~ap-TGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.+.+.++ .|.|||+++.-....+...+.+|++|
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 45556655 68999998777766666678888887
No 393
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=76.66 E-value=1.9 Score=35.79 Aligned_cols=103 Identities=10% Similarity=0.109 Sum_probs=56.3
Q ss_pred EEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc--cHHHHHHHHHHHHHhccccceEeccceecCCCcEEEEcHHHHHHHH
Q psy2764 93 VTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP--IKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSML 170 (419)
Q Consensus 93 v~apTGsGKT~~~~~~i~~~~~~~~~~lii~P--t~~L~~q~~~~~~~~~~~~~~~~g~~~~~~~~~Iiv~Tp~~l~~~~ 170 (419)
..+..|+|||+++......+...+.+++++=- ...+. .++.. .....+++-+.++.+...+
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~--------~~~~~---------~~~~~~~~~~~~~~l~~~l 69 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT--------NWSKA---------GKAAFDVFTAASEKDVYGI 69 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--------HHHTT---------SCCSSEEEECCSHHHHHTH
T ss_pred EeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH--------HHHhc---------CCCCCcEEecCcHHHHHHH
Confidence 34668899999877777666677888888753 22221 11110 0112445555556666555
Q ss_pred hcCCCCCCCccEEEEeCCcccCCCcchHHHHHHHHhcCCCCcEEEEeeecCC
Q psy2764 171 YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222 (419)
Q Consensus 171 ~~~~~~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 222 (419)
..- -..++++|+|=.-.+ ......++... +.-++.+.++...
T Consensus 70 ~~l---~~~yD~viiD~~~~~-----~~~~~~~l~~a--d~viiv~~~~~~~ 111 (206)
T 4dzz_A 70 RKD---LADYDFAIVDGAGSL-----SVITSAAVMVS--DLVIIPVTPSPLD 111 (206)
T ss_dssp HHH---TTTSSEEEEECCSSS-----SHHHHHHHHHC--SEEEEEECSCTTT
T ss_pred HHh---cCCCCEEEEECCCCC-----CHHHHHHHHHC--CEEEEEecCCHHH
Confidence 442 235899999965543 22333333332 3444555555555
No 394
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=76.64 E-value=1 Score=39.01 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3788999999999999975
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=76.59 E-value=1.8 Score=35.34 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~ 110 (419)
..+++.|+.|||||+++-.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999987555443
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.59 E-value=1.6 Score=38.47 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCChhHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~ 106 (419)
+.+++.+|+|+|||+.+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 459999999999997643
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=76.55 E-value=1.9 Score=35.63 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=17.3
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.|+.|||||+.+-.+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999998755544333
No 398
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.43 E-value=6.4 Score=36.59 Aligned_cols=66 Identities=14% Similarity=0.008 Sum_probs=51.3
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccE
Q psy2764 114 NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEY 182 (419)
Q Consensus 114 ~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~ 182 (419)
..+.++||.++++.-+..+++.+.+....+..++|+.+. ....+|+|+|.- + .....++.+++
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gidip~v~~ 347 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----A-ARGLDISNVKH 347 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----H-HTTSCCCCEEE
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----h-hcCCCcccCCE
Confidence 357889999999999999999999887778888887643 235789999961 2 33456778888
Q ss_pred EEE
Q psy2764 183 VIF 185 (419)
Q Consensus 183 lIi 185 (419)
||.
T Consensus 348 Vi~ 350 (417)
T 2i4i_A 348 VIN 350 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 399
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.17 E-value=2.1 Score=34.21 Aligned_cols=21 Identities=10% Similarity=0.358 Sum_probs=16.6
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+++.++.|||||+++-.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999987555443
No 400
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.15 E-value=1.1 Score=38.31 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+.+.+.+|+|+|||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 401
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=76.13 E-value=2.3 Score=36.78 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=24.4
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+..+..|.|||+++......+...+.+++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44567889999988777776767788888863
No 402
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.09 E-value=1.1 Score=38.18 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|.|+|||+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 403
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.04 E-value=2.6 Score=40.38 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=19.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
...++++.||+|+|||.++-.....+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999998755444433
No 404
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.94 E-value=1.3 Score=35.99 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=13.8
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
++..+++.|+.|||||+++-.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999998755443
No 405
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.80 E-value=3.2 Score=38.52 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=27.4
Q ss_pred cHHHHHHHHHH---hcCCcEEEEcCCCCChhHHHHHHHHH
Q psy2764 75 DVFQKQAIIKL---EEHNHVFVTAHTSAGKTVIAEYAIAL 111 (419)
Q Consensus 75 ~~~Q~~ai~~~---~~~~~~iv~apTGsGKT~~~~~~i~~ 111 (419)
-..-.++|..+ -.|+.+.+.+|+|+|||..+......
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 34556777775 47999999999999999875444333
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=75.74 E-value=1.7 Score=35.40 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
.|+-+++.++.|+|||+.++.++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 56789999999999997644433
No 407
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=75.73 E-value=1.7 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.3
Q ss_pred cEEEEcCCCCChhHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+.|+.|||||+++-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5789999999999875443
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.49 E-value=2 Score=36.07 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=17.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.|+.|||||+.+-.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999998765554433
No 409
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=75.33 E-value=1.9 Score=37.16 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.+..+.+.||.|||||+.+-..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999864433
No 410
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=75.29 E-value=3.2 Score=34.77 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=23.3
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.....|.|||+++......+.+.+ +++++
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 4567889999998777766666677 88875
No 411
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=75.26 E-value=1.8 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+.+.+.+|+|||||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 412
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=75.18 E-value=1.7 Score=36.93 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+.+-+++.+|+||||++.+..+.-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456788899999999987655543
No 413
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=75.08 E-value=1.2 Score=39.18 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.07 E-value=1.3 Score=38.33 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|+|||+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.97 E-value=1.8 Score=36.34 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=16.7
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+++.||+||||++.+..+.-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655543
No 416
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.88 E-value=3 Score=33.30 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
..|.-+.+.+|.|+|||+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778899999999999753
No 417
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.82 E-value=3.5 Score=40.33 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHh
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQ 113 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~ 113 (419)
+..+++|.+.||||||.+.-..+..+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999987555555443
No 418
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=74.77 E-value=3.2 Score=38.15 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSP 124 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~P 124 (419)
.-++..+..|.|||+++.-....+. ..+.++++|-.
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4567788999999998877777776 78888888763
No 419
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=74.75 E-value=1.8 Score=36.05 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.1
Q ss_pred cEEEEcCCCCChhHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~ 108 (419)
.+.+.||.|||||+++-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999874443
No 420
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.71 E-value=1.7 Score=38.28 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCChhHHH
Q psy2764 89 NHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~ 105 (419)
+.+++.+|+|+|||+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45999999999999764
No 421
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.67 E-value=1.3 Score=38.70 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 422
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.65 E-value=2.5 Score=44.00 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQN 114 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~~ 114 (419)
..+++.||||+|||.++-.....+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 37999999999999876554444433
No 423
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=74.60 E-value=1.3 Score=38.84 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|+|||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3788999999999999975
No 424
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=74.54 E-value=3.3 Score=36.05 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=24.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.+.+.-|.|||+++......+...+.++++|
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44567899999998777766666778888875
No 425
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=74.33 E-value=1.9 Score=35.72 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
..+.+.+++|||||+++-.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999875443
No 426
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=74.27 E-value=1.9 Score=35.77 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~ 108 (419)
..+++.|+.|||||+++-.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999875433
No 427
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.19 E-value=2.2 Score=40.53 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
.+++++.+|+|+|||+++-...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999998654433
No 428
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.13 E-value=1.4 Score=38.56 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|+|||+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3788999999999999975
No 429
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=74.12 E-value=3.5 Score=35.16 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=26.6
Q ss_pred cEEEEcC-CCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 90 HVFVTAH-TSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 90 ~~iv~ap-TGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
.++|.+. ||+|||++.+.++..+.+.+.++.+.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 3445554 9999999877777778888888888765
No 430
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=74.11 E-value=2.9 Score=38.09 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=25.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
..+..+.+.+|+|+|||+..-...-.....+.++.|+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 35678999999999999764443333333455555554
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=73.93 E-value=3.1 Score=37.19 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
..+-+.+.+.-|.|||+++......+...+.+|++|
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 445666678899999998877776676778888887
No 432
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=73.86 E-value=1.4 Score=38.68 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+-+.+.+|.|+|||+.
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 3788999999999999975
No 433
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=73.60 E-value=3.7 Score=35.04 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=24.2
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcC-CCeEEEEc
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNH-KTRTIYTS 123 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~-~~~~lii~ 123 (419)
+..+..|.|||+++......+... +.++++|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 345668999999877777777766 88888874
No 434
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.47 E-value=1.4 Score=38.25 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCChhHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i 109 (419)
+..+++.|++|||||+.+-.+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998754443
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.20 E-value=2.2 Score=37.31 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+.+.+.+|+|+|||+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4789999999999999975
No 436
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=72.99 E-value=3.5 Score=36.46 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=24.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.+.+..|.|||+++.-....+...+.++++|
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44567899999998777766666677788775
No 437
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=72.81 E-value=1.5 Score=38.46 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3788999999999999975
No 438
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=72.72 E-value=1.8 Score=38.60 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~ 110 (419)
.-+.+.||.|||||+++-....
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999987655443
No 439
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=72.63 E-value=1.5 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4788999999999999975
No 440
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=72.61 E-value=4.4 Score=37.08 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=29.1
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHh--cCCCeEEEEcc
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSP 124 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i~~~~--~~~~~~lii~P 124 (419)
+-+++.+.-|.|||+++......+. ..+.+++++--
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 5778888999999998877766666 77888888763
No 441
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=72.56 E-value=2.7 Score=35.58 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=17.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
.+++.|+.|||||+.+-.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999998765554433
No 442
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=72.54 E-value=1.9 Score=37.16 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..+.-+-+.||.|||||+.+-..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 35667889999999999875443
No 443
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=72.38 E-value=4.2 Score=35.06 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=27.5
Q ss_pred CcEEEEcC-CCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 89 NHVFVTAH-TSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 89 ~~~iv~ap-TGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
+.++|.+. ||+|||.+.+.++..+.+.+.++.+.=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 45555554 9999999877777778888888888755
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=72.28 E-value=3.4 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
.+..+.+.+++|+|||+.+......+...+.++.++.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4568889999999999865444444444455555544
No 445
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=72.24 E-value=2.5 Score=36.63 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999976
No 446
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=72.24 E-value=2.4 Score=38.15 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCChhHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~ 108 (419)
.|.-+.+.||+|||||+.+-.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHH
Confidence 4567889999999999875443
No 447
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.07 E-value=1.6 Score=43.26 Aligned_cols=15 Identities=13% Similarity=0.485 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHH
Q psy2764 90 HVFVTAHTSAGKTVI 104 (419)
Q Consensus 90 ~~iv~apTGsGKT~~ 104 (419)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999965
No 448
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.06 E-value=2.8 Score=35.03 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCChhHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~ 106 (419)
.-.++.+|+|+|||.+..
T Consensus 24 ~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 467899999999998743
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=72.03 E-value=2.5 Score=37.06 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999976
No 450
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=72.00 E-value=3.8 Score=36.36 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=26.2
Q ss_pred cCCcEEEEc---CCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTA---HTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~a---pTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.++.+.+.. .-|.|||+++......+...+.++++|
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 345555554 789999998777666666678888874
No 451
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=71.91 E-value=1.9 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCCChhHH
Q psy2764 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 75 ~~~Q~~ai~~~~~~~~~iv~apTGsGKT~~ 104 (419)
.+.+...-+.-...-.+++.|++|+|||..
T Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 8 HHHSSGLVPRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp -------------CEEEEEEEETTSSHHHH
T ss_pred ccccCCccCCCCceeEEEEECCCCCCHHHH
Confidence 444444444445667999999999999954
No 452
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.62 E-value=2 Score=36.18 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~ 108 (419)
+..+.+.++.|||||+++-.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346889999999999875443
No 453
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=71.45 E-value=2.1 Score=37.30 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|+|+|||+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4788999999999999975
No 454
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=71.40 E-value=2 Score=39.49 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|||||+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3788999999999999975
No 455
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=71.20 E-value=9.3 Score=35.31 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=52.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccEE
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~l 183 (419)
.+.++||.++++.-+..+++.+.+....+..++|+.+. ....+|+|+|. .......++.+++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCCEE
Confidence 56799999999999999999999987778889987642 23478999995 22344677889998
Q ss_pred EEeC
Q psy2764 184 IFDE 187 (419)
Q Consensus 184 IiDE 187 (419)
|.-.
T Consensus 339 i~~~ 342 (412)
T 3fht_A 339 INFD 342 (412)
T ss_dssp EESS
T ss_pred EEEC
Confidence 8543
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=71.07 E-value=11 Score=31.77 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=25.4
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
+|.-+++.|+.|+|||+.+..+...+.. .-.++--|
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~--~~~~~~ep 39 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP--NCKLLKFP 39 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS--SEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEec
Confidence 5788999999999999886665555533 23444456
No 457
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.87 E-value=10 Score=36.45 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=52.6
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCccE
Q psy2764 114 NHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDLEY 182 (419)
Q Consensus 114 ~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~ 182 (419)
..+.+.++++.+..-+..+.+.+.+....+..++|+.+. +...+|+|||+..+. ...+++++++
T Consensus 345 ~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~ 419 (510)
T 2oca_A 345 QKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHH 419 (510)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEE
T ss_pred hcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcE
Confidence 345666666666888888888888877678888887642 234789999977664 2346788999
Q ss_pred EEEeCCc
Q psy2764 183 VIFDEVH 189 (419)
Q Consensus 183 lIiDE~h 189 (419)
+|+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998877
No 458
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=70.73 E-value=2.6 Score=34.86 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcccHHHHHHHHH
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYR 134 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~Pt~~L~~q~~~ 134 (419)
+..+.+.|+.|||||+++-...-.+ + +.+..+-.++.+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C---CEEEEHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C---CEEEECcHHHHHHHH
Confidence 3567889999999998765543322 2 334456666666655
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=70.34 E-value=2.8 Score=36.37 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|..+.+.+|.|+|||+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 4788999999999999975
No 460
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.28 E-value=3 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
..|+.+.++||+|+|||+..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 57899999999999999763
No 461
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=70.09 E-value=4 Score=35.87 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=24.7
Q ss_pred CcEEEEcC-CCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 89 NHVFVTAH-TSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 89 ~~~iv~ap-TGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+.+.+.++ .|.|||+++.-....+...+.++++|
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 34555544 68999998777666666678888886
No 462
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=69.83 E-value=5.1 Score=33.21 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=27.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE-cccHHH
Q psy2764 91 VFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT-SPIKAL 128 (419)
Q Consensus 91 ~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii-~Pt~~L 128 (419)
+.+-|+-|||||+..-.+.-.+...+..+++. -|....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCc
Confidence 56789999999998766666676677666654 355433
No 463
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=69.77 E-value=3.2 Score=36.73 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=22.7
Q ss_pred EcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 94 TAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 94 ~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
....|.|||+++......+...+.++++|
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 46689999998777776666778888875
No 464
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.75 E-value=7.3 Score=35.70 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccccceEeccceec-----------CCCcEEEEcHHHHHHHHhcCCCCCCCccEE
Q psy2764 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQIN-----------TTASCLVMTTEILRSMLYRGSDVLRDLEYV 183 (419)
Q Consensus 115 ~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~~-----------~~~~Iiv~Tp~~l~~~~~~~~~~l~~~~~l 183 (419)
.+.++||.++++.-+..+++.+.+....+..++|+.+.. ...+|+|+|. .......++.+++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCCEE
Confidence 467899999999999999999999877788899876422 3478999995 22344677889999
Q ss_pred EEeCCcc
Q psy2764 184 IFDEVHY 190 (419)
Q Consensus 184 IiDE~h~ 190 (419)
|.-+...
T Consensus 316 i~~~~p~ 322 (395)
T 3pey_A 316 VNYDLPT 322 (395)
T ss_dssp EESSCCB
T ss_pred EEcCCCC
Confidence 8766554
No 465
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=69.69 E-value=4.5 Score=37.05 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q psy2764 88 HNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS 123 (419)
Q Consensus 88 ~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~ 123 (419)
+..+.+.|++|+|||+..-..+......+.++.|+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 457889999999999764444444444455555555
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=69.59 E-value=3.8 Score=35.12 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCChhHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i 109 (419)
....+.+.+|+|||||+++-.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44579999999999998755443
No 467
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=69.46 E-value=5.1 Score=35.50 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=25.1
Q ss_pred CcEEEEc-CCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 89 NHVFVTA-HTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 89 ~~~iv~a-pTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+-+.+.+ ..|.|||+++.-....+...+.++++|
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 4454554 468999998777766676778888888
No 468
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=69.06 E-value=2.4 Score=38.89 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=21.8
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
.+.+.+++++||-=.-+|......+..++..+
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 34567899999988767766555555555444
No 469
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.84 E-value=3.2 Score=38.35 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCChhHHH
Q psy2764 89 NHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~ 105 (419)
.-.++.||||+|||.+.
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56789999999999874
No 470
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=68.79 E-value=2.5 Score=39.25 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|.-+.+.+|+|||||+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTL 45 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTL 45 (381)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEEcCCCchHHHH
Confidence 3788999999999999975
No 471
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=68.65 E-value=2.5 Score=38.89 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
.+.+.+++++||-=.-+|...+..+..++..+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 35567899999998777766555555555443
No 472
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.65 E-value=3.3 Score=42.46 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHH
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALS 112 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~ 112 (419)
...++++.||+|+|||.++-.....+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999998765554443
No 473
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=68.33 E-value=5.3 Score=34.65 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=25.3
Q ss_pred EEEcCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q psy2764 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSP 124 (419)
Q Consensus 92 iv~apTGsGKT~~~~~~i~~~~~~~~~~lii~P 124 (419)
|....||+|||.+.+.++..+.+++.++.+.=|
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 344458999999877777778888888888765
No 474
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=68.23 E-value=3.9 Score=35.61 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=21.9
Q ss_pred EcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 94 TAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 94 ~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.+.-|+|||+++......+. .+.++++|
T Consensus 34 s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred eCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 46688999998777666666 78888887
No 475
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=68.00 E-value=3.6 Score=35.13 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=19.0
Q ss_pred hcCCcEEEEcCCCCChhHHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~i 109 (419)
..+..+.+.++.|||||+++-.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999998755443
No 476
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=67.95 E-value=3 Score=42.46 Aligned_cols=34 Identities=32% Similarity=0.629 Sum_probs=30.0
Q ss_pred HHHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 386 ~t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
..+.+..|+.++|++|+..+|..+++.|++|.++
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 322 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe
Confidence 3456677999999999999999999999999875
No 477
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=67.94 E-value=3.1 Score=35.98 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i 109 (419)
..+.+.|+.|||||+++-.+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368899999999998755443
No 478
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.93 E-value=2.6 Score=38.80 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=22.0
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
..+.+++++||-=.-+|......+..++..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4567899999998777766666565555544
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=67.70 E-value=3.5 Score=38.23 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~ 108 (419)
..++.+++.||+|+|||+.+-..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999764433
No 480
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=67.54 E-value=2.7 Score=38.71 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=26.4
Q ss_pred CCCCccEEEEeCCcccCCCcchHHHHHHHHhcCC--CCcEEEEe
Q psy2764 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPK--EVCIVMLS 217 (419)
Q Consensus 176 ~l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~--~~~~l~~S 217 (419)
...+.+++++||.=.-+|......+..++..+.. +.-+++.|
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vT 221 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4556789999999877776655555555555532 34444443
No 481
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=67.13 E-value=2.7 Score=40.20 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.2
Q ss_pred hcCCcEEEEcCCCCChhHHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAE 106 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~ 106 (419)
..|..+.+.+|+|||||+..-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 478999999999999997643
No 482
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=67.11 E-value=2.9 Score=36.22 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=22.2
Q ss_pred cCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 95 AHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 95 apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
+..|.|||+++......+...+.++++|
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 5679999998777766666678888886
No 483
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=67.04 E-value=2.8 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCChhHH
Q psy2764 87 EHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~ 104 (419)
. ..+.+.+|+|+|||+.
T Consensus 24 ~-e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp S-SEEEEECCTTSSHHHH
T ss_pred C-EEEEEECCCCCCHHHH
Confidence 5 7788999999999975
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.91 E-value=4.5 Score=39.34 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=24.5
Q ss_pred hcCCcEEEEcCCCCChhHHHHHH-HHHHhcCCCeEEEEc
Q psy2764 86 EEHNHVFVTAHTSAGKTVIAEYA-IALSQNHKTRTIYTS 123 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~~~~-i~~~~~~~~~~lii~ 123 (419)
..|..+.+.+|+|||||+.+... +.-+...+...+++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 36889999999999999865442 222333233455554
No 485
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=66.89 E-value=3.9 Score=35.94 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=13.2
Q ss_pred cEEEEcCCCCChhHH
Q psy2764 90 HVFVTAHTSAGKTVI 104 (419)
Q Consensus 90 ~~iv~apTGsGKT~~ 104 (419)
++.++||+|+|||+.
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=66.87 E-value=3.6 Score=36.62 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~ 104 (419)
..|+.+.+.+|+|+|||+.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3788999999999999975
No 487
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=66.71 E-value=7.7 Score=35.11 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=51.8
Q ss_pred HhcCCCeEEEEcccHHHHHHHHHHHHHhccccceEecccee-----------cCCCcEEEEcHHHHHHHHhcCCCCCCCc
Q psy2764 112 SQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQI-----------NTTASCLVMTTEILRSMLYRGSDVLRDL 180 (419)
Q Consensus 112 ~~~~~~~~lii~Pt~~L~~q~~~~~~~~~~~~~~~~g~~~~-----------~~~~~Iiv~Tp~~l~~~~~~~~~~l~~~ 180 (419)
+...+.++||.++++.-+.++++.+.+....+..++|+.+. ....+|+|+|.- +.. ...++.+
T Consensus 234 l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-Gid~~~~ 307 (367)
T 1hv8_A 234 LKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MSR-GIDVNDL 307 (367)
T ss_dssp HCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HHH-HCCCSCC
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hhc-CCCcccC
Confidence 34567889999999999999999999987778888887542 234789999941 112 2356778
Q ss_pred cEEEEeC
Q psy2764 181 EYVIFDE 187 (419)
Q Consensus 181 ~~lIiDE 187 (419)
+++|.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887643
No 488
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.66 E-value=2.4 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.162 Sum_probs=22.3
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhcCC
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILLPK 209 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~~~ 209 (419)
+.+.+++++||--.-+|......+..++..+..
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 345678999998877776666666666666543
No 489
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=66.64 E-value=2.9 Score=38.69 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=21.6
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
+.+.+++++||--.-+|...+..+..++..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 4567899999998777766555555555444
No 490
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=66.55 E-value=2.9 Score=38.68 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=21.7
Q ss_pred CCCccEEEEeCCcccCCCcchHHHHHHHHhc
Q psy2764 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILL 207 (419)
Q Consensus 177 l~~~~~lIiDE~h~l~~~~~~~~~~~i~~~~ 207 (419)
..+.+++++||--.-+|......+..++..+
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 4466799999998777766666565555544
No 491
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=66.43 E-value=6 Score=46.24 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=20.8
Q ss_pred HhcCCcEEEEcCCCCChhHHHHHHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~~~~i~ 110 (419)
+.....++++||||||||.++-.+..
T Consensus 920 ~~~r~gvmlvGptgsGKTt~~~~La~ 945 (2695)
T 4akg_A 920 QKTQQALILVGKAGCGKTATWKTVID 945 (2695)
T ss_dssp HHHCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcceEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999988655543
No 492
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=66.43 E-value=4.9 Score=36.36 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=15.1
Q ss_pred HhcCCc--EEEEcCCCCChhHH
Q psy2764 85 LEEHNH--VFVTAHTSAGKTVI 104 (419)
Q Consensus 85 ~~~~~~--~iv~apTGsGKT~~ 104 (419)
++.|.| ++.-++||||||..
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 73 VLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHTTCCEEEEEECSTTSSHHHH
T ss_pred HhCCCeEEEEEECCCCCCCceE
Confidence 356765 67789999999943
No 493
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=66.31 E-value=4.3 Score=33.55 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=16.6
Q ss_pred cEEEEcCCCCChhHHHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYAIA 110 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~i~ 110 (419)
.+.+.++.|||||+++-.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999987655443
No 494
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.20 E-value=3.4 Score=36.71 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.4
Q ss_pred cEEEEcCCCCChhHHHHHH
Q psy2764 90 HVFVTAHTSAGKTVIAEYA 108 (419)
Q Consensus 90 ~~iv~apTGsGKT~~~~~~ 108 (419)
.+++.+++|||||+.+-.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999875443
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=66.17 E-value=2.7 Score=35.83 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCChhHH
Q psy2764 87 EHNHVFVTAHTSAGKTVI 104 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~ 104 (419)
.|.-+.+.|+.|||||+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 567889999999999975
No 496
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=65.77 E-value=3.8 Score=41.51 Aligned_cols=33 Identities=30% Similarity=0.622 Sum_probs=29.3
Q ss_pred HHHHhhhhhhccCCCChhhHHHHHHHHhcCcCC
Q psy2764 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419 (419)
Q Consensus 387 t~~l~~GIDi~~~~l~~~~r~~ie~~f~~g~i~ 419 (419)
.+.+..|+.++|++|+..+|..+++.|++|.++
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 324 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK 324 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe
Confidence 345567999999999999999999999999875
No 497
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=65.67 E-value=2.9 Score=48.83 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCCChhHHH
Q psy2764 85 LEEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 85 ~~~~~~~iv~apTGsGKT~~~ 105 (419)
+..++.+++.||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 467899999999999999754
No 498
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=65.48 E-value=3.4 Score=36.52 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q psy2764 89 NHVFVTAHTSAGKTVIAEYAI 109 (419)
Q Consensus 89 ~~~iv~apTGsGKT~~~~~~i 109 (419)
..+.+.|+.|||||+++-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998765544
No 499
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=65.37 E-value=7 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=22.3
Q ss_pred cCCcEEEEcCCCCChhHHHHHHHHHHhcCCCeEEEE
Q psy2764 87 EHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122 (419)
Q Consensus 87 ~~~~~iv~apTGsGKT~~~~~~i~~~~~~~~~~lii 122 (419)
.-..+++.|++|+|||......+...... .++.++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 34589999999999997644444443333 344444
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=65.37 E-value=4.1 Score=37.96 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCChhHHH
Q psy2764 86 EEHNHVFVTAHTSAGKTVIA 105 (419)
Q Consensus 86 ~~~~~~iv~apTGsGKT~~~ 105 (419)
..|.-+.+.+|+|||||+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCChHHHHH
Confidence 47899999999999999763
Done!