Your job contains 1 sequence.
>psy2764
MWGEVLPHSLGRVLRGQNSGSNRREVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFD
AKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI
YTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDL
EYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYV
VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKGGSGGG
KLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK
IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2764
(419 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 1184 2.5e-120 1
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 1167 1.6e-118 1
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 1154 3.8e-117 1
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 1151 7.9e-117 1
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 1145 3.4e-116 1
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 1144 4.4e-116 1
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 1144 4.4e-116 1
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 1138 1.9e-115 1
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 1138 1.9e-115 1
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 1138 1.9e-115 1
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 1138 1.9e-115 1
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 1138 1.9e-115 1
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 803 1.8e-106 2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 1016 1.6e-102 1
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 765 2.5e-102 2
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 1009 8.8e-102 1
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 764 1.4e-100 2
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 932 4.4e-93 1
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 701 2.8e-92 2
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 824 3.5e-84 2
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 824 3.6e-82 1
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 824 3.6e-82 1
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 824 3.6e-82 1
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 824 3.6e-82 1
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 824 3.6e-82 1
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 822 5.8e-82 1
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 821 7.4e-82 1
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 826 1.5e-81 1
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel... 793 8.3e-81 2
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 809 1.4e-80 1
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 808 1.8e-80 1
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 801 9.7e-80 1
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 799 1.6e-79 1
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 798 2.0e-79 1
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 796 3.7e-79 1
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 789 1.8e-78 1
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 785 4.8e-78 1
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 780 2.4e-77 1
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 772 1.1e-76 1
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 756 1.3e-74 1
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein... 620 8.4e-60 1
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 515 1.2e-48 1
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 421 3.2e-38 1
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein... 394 9.0e-36 1
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species... 367 1.1e-32 1
POMBASE|SPAC694.02 - symbol:SPAC694.02 "DEAD/DEAH box hel... 223 7.4e-18 2
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 212 6.2e-17 2
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 205 2.9e-15 3
RGD|1560014 - symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box po... 178 8.1e-14 3
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 163 1.4e-13 2
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 159 4.8e-13 2
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 154 1.7e-12 2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 167 9.2e-12 2
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 167 9.2e-12 2
UNIPROTKB|G4MUH1 - symbol:MGG_07250 "DEAD/DEAH box helica... 166 3.3e-11 2
UNIPROTKB|Q5H9U9 - symbol:DDX60L "Probable ATP-dependent ... 137 1.2e-10 2
UNIPROTKB|F1P0I1 - symbol:F1P0I1 "Uncharacterized protein... 164 1.5e-10 2
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R... 157 3.0e-10 3
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 132 3.4e-10 2
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 135 1.2e-09 2
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 140 1.4e-09 2
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 140 1.4e-09 2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 144 1.7e-09 2
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 176 1.9e-09 2
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 152 3.7e-09 2
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 102 4.3e-09 3
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 148 8.2e-09 2
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 159 8.5e-09 1
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 120 1.1e-08 3
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 134 2.0e-08 2
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 150 2.1e-08 2
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 150 2.2e-08 2
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 159 2.9e-08 2
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 145 3.5e-08 2
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 116 3.9e-08 2
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 154 6.2e-08 2
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 138 6.3e-08 2
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 126 7.4e-08 2
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 127 2.2e-07 2
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 119 4.1e-07 2
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 148 8.0e-07 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 113 9.4e-07 4
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 133 1.1e-06 2
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 133 1.1e-06 2
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 127 1.5e-06 2
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 134 2.2e-06 2
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 132 2.6e-06 2
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 123 2.7e-06 3
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 145 3.4e-06 2
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 109 3.4e-06 4
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 109 3.4e-06 4
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 121 5.7e-06 2
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 121 5.7e-06 2
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 124 6.3e-06 2
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 107 7.9e-06 3
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 144 1.1e-05 3
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 111 1.1e-05 3
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 114 1.6e-05 2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 137 1.6e-05 1
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 118 1.7e-05 2
WARNING: Descriptions of 17 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
Identities = 238/393 (60%), Positives = 295/393 (75%)
Query: 29 PILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEH 88
P+L IS T +++WAEM+D+S+P+ +F ++P A +PFELDVFQKQAI+KLE+
Sbjct: 220 PVLNISTTTKNF--KSDWAEMVDISQPINNFKEQIPCPAMDFPFELDVFQKQAILKLEQR 277
Query: 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG 148
+VFV AHTSAGKTV+AEYAIALS+ TRTIYTSPIKALSNQKYRDFR+TF+DVGL+TG
Sbjct: 278 QYVFVAAHTSAGKTVVAEYAIALSKRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITG 337
Query: 149 DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLP 208
D QI TASCL+MTTEILRSMLY GSDV RDLE+VIFDEVHYIN+ ERGHVWEEV+ILLP
Sbjct: 338 DLQIEPTASCLIMTTEILRSMLYCGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLP 397
Query: 209 KEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV-LEKNQLFL 267
+ V I+MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G ++ +FL
Sbjct: 398 EHVNIIMLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFL 457
Query: 268 IREAEGEFLTRGYLAAKEVKCRKQLE-KXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQ 326
+ +A+G++L Y K V+ +K+++ K E+ +I +++LR+S
Sbjct: 458 LVDAQGKYLQGNY--EKAVERKKEMQGKAKGGGGGPRNHLNAKQEQYTWIGLIDFLRRSN 515
Query: 327 NLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRL 386
+PVV FTLSR RCD N A L S+D +T EK + +FF + L+ DR +PQV L
Sbjct: 516 MMPVVAFTLSRNRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLK-PPDRTIPQVLVL 574
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ L+ GIGVHHSGILPILKEIVEMLFQ GLVK
Sbjct: 575 KDALERGIGVHHSGILPILKEIVEMLFQNGLVK 607
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 225/378 (59%), Positives = 285/378 (75%)
Query: 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVI 104
+WA +D+S P DF ++P A +PFELDVFQKQAI++LE H+ VFV AHTSAGKTV+
Sbjct: 290 KWAIPVDISSPCADFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVV 349
Query: 105 AEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTE 164
AEYAIALSQ H TRTIYTSPIKALSNQK+RDF+ TF DVGL+TGD Q+N SCL+MTTE
Sbjct: 350 AEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEGSCLIMTTE 409
Query: 165 ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224
ILRSMLY GS+V+RDLE+VIFDEVHYIND+ERG VWEEVLI+LP+ V I++LSATVPN +
Sbjct: 410 ILRSMLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAV 469
Query: 225 EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFLTRGYLAA 283
EF++W+G KK +YV+ST+KRPVPL+H+LY G + + +LF++ +A G FLT+GY AA
Sbjct: 470 EFSEWIGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGYYAA 529
Query: 284 KEVKCRKQLEKXXXXXXKLNGPF--TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCD 341
E K + + K T ++ ++ + LNYL + Q PVV FT SR RCD
Sbjct: 530 VEAKKERTSKHAQSFGTKNVSQHNTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCD 589
Query: 342 QNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGI 401
+NA +L S+D +T+ EKS+IH F Q S+ L+ DR LPQ+ + LLK GIGVHHSGI
Sbjct: 590 ENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRG-GDRQLPQILLMRDLLKRGIGVHHSGI 648
Query: 402 LPILKEIVEMLFQKGLVK 419
LPILKE++EMLF +GLVK
Sbjct: 649 LPILKEVIEMLFSRGLVK 666
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 229/386 (59%), Positives = 286/386 (74%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
PK Q EWA +DV+ PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PKPPPQEEWAIPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND+ERG VWEEVLI+LP V I++LS
Sbjct: 395 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLS 454
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 455 ATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFH 514
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR + LPVV+F
Sbjct: 515 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTNQGGPAQDRGVYLSLLASLRAREQLPVVVF 572
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 573 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLHRG 631
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 632 LGVHHSGILPILKEIVEMLFSRGLVK 657
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 229/386 (59%), Positives = 286/386 (74%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
PK V Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PKPVPQEQWAIPVDVTSPVGDFYRLIPQPAFQWSFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND+ERG VWEEVLI+LP V I++LS
Sbjct: 395 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLS 454
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 455 ATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFH 514
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 515 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 572
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 573 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLHRG 631
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 632 LGVHHSGILPILKEIVEMLFSRGLVK 657
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 228/386 (59%), Positives = 285/386 (73%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
PK Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PKPPPQEQWAIPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND+ERG VWEEVLI+LP V I++LS
Sbjct: 395 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLS 454
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 455 ATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFH 514
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 515 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 572
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 573 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLHRG 631
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 632 LGVHHSGILPILKEIVEMLFSRGLVK 657
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 228/392 (58%), Positives = 290/392 (73%)
Query: 33 ISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 91
+S P K Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE+H+ V
Sbjct: 263 VSTLEPLKPPPQEQWAVPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLEQHDSV 322
Query: 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151
FV AHTSAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q
Sbjct: 323 FVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQ 382
Query: 152 INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211
++ ASCL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND+ERG VWEEVLI+LP+ V
Sbjct: 383 LHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHV 442
Query: 212 CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIRE 270
I++LSATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ +
Sbjct: 443 SIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 502
Query: 271 AEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQN 327
+ G F T+GY AA E K + + K P +G ++ ++++ L LR
Sbjct: 503 SRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLALLASLRTRAQ 560
Query: 328 LPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE 387
LPVV+FT SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV +
Sbjct: 561 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMS 619
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+LL+ G+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 620 ELLRRGLGVHHSGILPILKEIVEMLFSRGLVK 651
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 228/392 (58%), Positives = 290/392 (73%)
Query: 33 ISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 91
+S P K Q +WA +DV+ PV DF +P A W FE DVFQKQAI+ LE+H+ V
Sbjct: 228 VSTLEPLKPPPQEQWAVPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLEQHDSV 287
Query: 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151
FV AHTSAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q
Sbjct: 288 FVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQ 347
Query: 152 INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211
++ ASCL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND+ERG VWEEVLI+LP+ V
Sbjct: 348 LHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHV 407
Query: 212 CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIRE 270
I++LSATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ +
Sbjct: 408 SIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLD 467
Query: 271 AEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQN 327
+ G F T+GY AA E K + + K P +G ++ ++++ L LR
Sbjct: 468 SRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLALLASLRTRAQ 525
Query: 328 LPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE 387
LPVV+FT SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV +
Sbjct: 526 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMS 584
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+LL+ G+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 585 ELLRRGLGVHHSGILPILKEIVEMLFSRGLVK 616
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 226/386 (58%), Positives = 284/386 (73%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 117 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 176
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 177 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 236
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND ERG VWEEVLI+LP V I++LS
Sbjct: 237 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLS 296
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 297 ATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFH 356
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 357 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 414
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 415 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLNRG 473
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 474 LGVHHSGILPILKEIVEMLFSRGLVK 499
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 226/386 (58%), Positives = 284/386 (73%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 82 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 141
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 142 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 201
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND ERG VWEEVLI+LP V I++LS
Sbjct: 202 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLS 261
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 262 ATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFH 321
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 322 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 379
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 380 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLNRG 438
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 439 LGVHHSGILPILKEIVEMLFSRGLVK 464
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 226/386 (58%), Positives = 284/386 (73%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 117 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 176
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 177 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 236
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND ERG VWEEVLI+LP V I++LS
Sbjct: 237 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLS 296
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 297 ATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFH 356
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 357 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 414
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 415 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLNRG 473
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 474 LGVHHSGILPILKEIVEMLFSRGLVK 499
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 226/386 (58%), Positives = 284/386 (73%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 82 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 141
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 142 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 201
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND ERG VWEEVLI+LP V I++LS
Sbjct: 202 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLS 261
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 262 ATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFH 321
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 322 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 379
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 380 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLNRG 438
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 439 LGVHHSGILPILKEIVEMLFSRGLVK 464
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 226/386 (58%), Positives = 284/386 (73%)
Query: 38 PKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHT 97
P+ +Q +WA +D + PV DF +P A W FE DVFQKQAI+ LE H+ VFV AHT
Sbjct: 275 PEPPSQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHT 334
Query: 98 SAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTAS 157
SAGKTV+AEYAIAL+Q H TRTIYTSPIKALSNQK+RDFR TF DVGL+TGD Q++ AS
Sbjct: 335 SAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEAS 394
Query: 158 CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLS 217
CL+MTTEILRSMLY GSDV+RDLE+VIFDEVHYIND ERG VWEEVLI+LP V I++LS
Sbjct: 395 CLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLS 454
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFL 276
ATVPN LEFADW+G K+ ++YV+ST+ RPVPL+H+L+ G + + +LFL+ ++ G F
Sbjct: 455 ATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFH 514
Query: 277 TRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGA---EKNLFISFLNYLRKSQNLPVVLF 333
T+GY AA E K + + K P +G ++ +++S L LR LPVV+F
Sbjct: 515 TKGYYAAVEAKKERMSKHAQTFGAKQ--PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVF 572
Query: 334 TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
T SR RCD+ A+ L S+D +T++EKS+IH F Q + L+ D R LPQV + +LL G
Sbjct: 573 TFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSD-RQLPQVLHMSELLNRG 631
Query: 394 IGVHHSGILPILKEIVEMLFQKGLVK 419
+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 632 LGVHHSGILPILKEIVEMLFSRGLVK 657
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 803 (287.7 bits), Expect = 1.8e-106, Sum P(2) = 1.8e-106
Identities = 151/242 (62%), Positives = 191/242 (78%)
Query: 45 EWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVI 104
EWA ++DV+K + +F VP MA WPFELD FQK+A+ LE + VFV AHTSAGKTV+
Sbjct: 294 EWAHVVDVNKEISNFHELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVV 353
Query: 105 AEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTE 164
AEYAIAL+ H T+ IYTSPIKALSNQK+RDF+ TF DVG++TGD QIN ASCL+MTTE
Sbjct: 354 AEYAIALAAKHMTKAIYTSPIKALSNQKFRDFKNTFDDVGILTGDVQINPEASCLIMTTE 413
Query: 165 ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTL 224
ILRSMLYRG+D++RD+E+VIFDEVHY+ND ERG VWEEV+I+LP+ V +++LSATVPNT
Sbjct: 414 ILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTQ 473
Query: 225 EFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAK 284
EFA WVG TKK +YV+ST KRPVPL+H+L+ G K++ F I ++ FL G+ A
Sbjct: 474 EFASWVGRTKKKDIYVISTAKRPVPLEHYLWAG----KDK-FKIVDSNKRFLESGWKQAD 528
Query: 285 EV 286
++
Sbjct: 529 DI 530
Score = 285 (105.4 bits), Expect = 1.8e-106, Sum P(2) = 1.8e-106
Identities = 57/116 (49%), Positives = 77/116 (66%)
Query: 304 GPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHR 363
G T +K +++ + +LRK LP +F S+KRC+QNA +L + DF A+EKS IH
Sbjct: 604 GRTTAAQDKTVWVQVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHI 663
Query: 364 FFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ S+ L+ ED R LPQ+ RL +LL GI VHH G+LPI+KEIVE+LF K LVK
Sbjct: 664 TIEKSLTRLKQED-RTLPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKTLVK 718
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 208/392 (53%), Positives = 270/392 (68%)
Query: 45 EWAEMLDVSKPVLD-FDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTV 103
E+A+ L +S D + VP MA +PF LD FQ+ +++ +E +FV AHTSAGKTV
Sbjct: 263 EFAQRLVLSADEEDEYKRLVPTMARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTV 322
Query: 104 IAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTT 163
+AEYAIAL Q HKTR +YTSPIKALSNQK+RDF++ F DVGLVTGD Q++ A+CL+MTT
Sbjct: 323 VAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGLVTGDIQLHPEAACLIMTT 382
Query: 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223
EILRSMLY GS+V+RDLE+V+FDEVHYIN+ ERGHVWEEVLI+LP V IVMLSATVPN
Sbjct: 383 EILRSMLYNGSEVIRDLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNC 442
Query: 224 LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEGEFLTRGYLA 282
+EFADWVG K K+ V+ST +RPVPL+HFLY G + + LF I + G+F+ +GY
Sbjct: 443 VEFADWVGRIKNRKINVISTDRRPVPLEHFLYTGQDGKTQKDLFKIIDRSGQFILKGYND 502
Query: 283 AKEVKCR-KQLEKXXXXXXK-------LNGPFTRGA-------EKNLFISFLNYLRKSQN 327
AK+ K + + EK + G G +KN++++ +NY++ S
Sbjct: 503 AKDSKAKIYEKEKAGGAGGRGTQRGGGRGGGGNGGGRNWPGKNDKNIYLNLINYMKCSDQ 562
Query: 328 LPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE 387
LP+V+F SRKRCD+NA L SM+ +T EK + FF ++ L+ D + LPQV +
Sbjct: 563 LPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSD-KELPQVLTMR 621
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L G VHHSGILPILKE+VE+LFQKG VK
Sbjct: 622 DLCLRGFAVHHSGILPILKEVVELLFQKGYVK 653
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 765 (274.4 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 147/243 (60%), Positives = 187/243 (76%)
Query: 46 WAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIA 105
WA ++D+ + DF VP MA TWPFELD FQK+A+ LE+ + VFV AHTSAGKTV+A
Sbjct: 262 WAHVVDLDHKIEDFQELVPNMARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKTVVA 321
Query: 106 EYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLVTGDFQINTTASCLVMTT 163
EYAIA++ + T+ IYTSPIKALSNQK+RDF+ETF+D VGL+TGD QIN A+CL+MTT
Sbjct: 322 EYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMTT 381
Query: 164 EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223
EILRSMLYRG+D++RD+E+VIFDEVHY+ND +RG VWEEV+I+LP V ++LSATVPNT
Sbjct: 382 EILRSMLYRGADLIRDVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNT 441
Query: 224 LEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAA 283
EFA+WVG TK+ +YV+ST KRPVPL+ F V KNQLF + +A F +
Sbjct: 442 FEFANWVGRTKQKDIYVISTPKRPVPLEIF-----VSAKNQLFKVVDANRRFQENEFRKH 496
Query: 284 KEV 286
K++
Sbjct: 497 KDL 499
Score = 284 (105.0 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 56/120 (46%), Positives = 83/120 (69%)
Query: 303 NGP--FTR-GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359
+GP F R G +KN +I +NY++ + LP V+F S+KRC++ A +L S+DF+ A EKS
Sbjct: 552 SGPKRFGRDGPKKNTWIDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKS 611
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+IH F ++ L+ ED R LPQ+ ++ ++L GI VHH G+LPI+KE +E+LF K LVK
Sbjct: 612 EIHMFIDRAVGRLKKED-RELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVK 670
Score = 40 (19.1 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 327 NLPV--VLFTLSRKRCDQNAANLLSMDFS 353
NLP V+F+ RK ++ NLL +F+
Sbjct: 683 NLPTRTVIFSSMRKHDGRSFRNLLPGEFT 711
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 215/442 (48%), Positives = 289/442 (65%)
Query: 8 HSLGRVLRGQNSGSNRREVD--IP----ILKIS-NTLPKHVTQTEWAEMLDVSKPVLDFD 60
H L L+ NS E+D +P I+ + +TL H Q ++A ++D S P+ +F
Sbjct: 211 HELNEHLKNVNS--KHSEIDDLLPDKRSIVSLPPSTLNLH-KQPDYAHVVDSSAPIENFQ 267
Query: 61 AKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTI 120
VP MA +PFELD FQK+AI LE + VFV AHTSAGKTV+AEYAIAL+Q H T+ I
Sbjct: 268 QLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAI 327
Query: 121 YTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDL 180
YTSPIKALSNQK+RDF+ F+DVG++TGD Q+N SCL+MTTEILRSMLYRG+D++RD+
Sbjct: 328 YTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDV 387
Query: 181 EYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYV 240
E+VIFDEVHY+ND ERG VWEEV+I+LP V +++LSATVPNT EFA WVG TKK +YV
Sbjct: 388 EFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYV 447
Query: 241 VSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXX 300
+STLKRPVPL+H+L+V K +F I + G FL GY +A + K+ +K
Sbjct: 448 ISTLKRPVPLEHYLWV-----KQNMFKIVDQHGRFLMDGYKSANDAL--KKPDKPVIAKD 500
Query: 301 KLNGPFTRGAEK-----------------------NLFISFLNYLRKSQNLPVVLFTLSR 337
N RGA + N ++ + +L K LPV++F S+
Sbjct: 501 NKNSARGRGAARGRGVQTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSK 560
Query: 338 KRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVH 397
KRC++ L + D + EKS++H + ++ L+ ED R LPQ+ R+ ++L G+ VH
Sbjct: 561 KRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKED-RLLPQIGRMREMLSRGLAVH 619
Query: 398 HSGILPILKEIVEMLFQKGLVK 419
H G+LPI+KEIVE+LFQ+GLVK
Sbjct: 620 HGGLLPIIKEIVEILFQRGLVK 641
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 764 (274.0 bits), Expect = 1.4e-100, Sum P(2) = 1.4e-100
Identities = 150/270 (55%), Positives = 200/270 (74%)
Query: 25 EVD--IPI-LKISNTLP--KHV-TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQ 78
E+D +PI + T P K V + EWA ++D++ + +FD +P A +WPFELD FQ
Sbjct: 275 EIDELLPIGIDFGRTKPVSKSVPVKKEWAHVVDLNHKIENFDELIPNPARSWPFELDTFQ 334
Query: 79 KQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRE 138
K+A+ LE+ + VFV AHTSAGKTV+AEYAIA++ + T+TIYTSPIKALSNQK+RDF+E
Sbjct: 335 KEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKE 394
Query: 139 TFQDV--GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSER 196
TF DV GL+TGD QIN A+CL+MTTEILRSMLYRG+D++RD+E+VIFDEVHY+ND +R
Sbjct: 395 TFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDR 454
Query: 197 GHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV 256
G VWEEV+I+LP+ V ++LSATVPNT EFA+W+G TK+ +YV+ST KRPVPL+ ++
Sbjct: 455 GVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA 514
Query: 257 GPVLEKNQLFLIREAEGEFLTRGYLAAKEV 286
K +L + EFL + KE+
Sbjct: 515 -----KKELIPVINQNSEFLEANFRKHKEI 539
Score = 270 (100.1 bits), Expect = 1.4e-100, Sum P(2) = 1.4e-100
Identities = 54/115 (46%), Positives = 77/115 (66%)
Query: 306 FTR-GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
FT+ G K + +NYLRK + LP+V+F S+KRC++ A L ++F EKS+IH F
Sbjct: 604 FTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMF 663
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ SI L+ ED R LPQ+ + LL+ GI VHH G+LPI+KE++E+LF KG +K
Sbjct: 664 IEKSITRLKKED-RDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK 717
Score = 43 (20.2 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVI 104
P E++++ K+ +I + N F+ A+ K ++
Sbjct: 507 PLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 540
Score = 39 (18.8 bits), Expect = 3.3e-76, Sum P(2) = 3.3e-76
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQK 415
+R+E++ K + V ++ +P+ ++ E L +K
Sbjct: 1176 QRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRK 1207
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 932 (333.1 bits), Expect = 4.4e-93, P = 4.4e-93
Identities = 190/387 (49%), Positives = 268/387 (69%)
Query: 43 QTEWA--EMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAG 100
+ +WA E +++ P+ D I +PF+LD FQKQAI+ +E+ VF+TAHTSAG
Sbjct: 404 EKQWAFLEQKEITSPLSDLITNPAI---EYPFDLDSFQKQAIVHMEQGESVFITAHTSAG 460
Query: 101 KTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLV 160
KTVIAEYAIA++ + TR IYTSPIKALSNQK+RDF+ TF DVGL+TGD I+ ++SCLV
Sbjct: 461 KTVIAEYAIAMAAKNMTRAIYTSPIKALSNQKFRDFKNTFNDVGLITGDVSISPSSSCLV 520
Query: 161 MTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATV 220
+TTEILRSMLY+G+D++RD+E+VIFDEVHY+ND ERG VWEEV+I+LP V +V LSATV
Sbjct: 521 LTTEILRSMLYKGADLIRDIEWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATV 580
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGY 280
N LEFA W+G TK+ +YV+ T KRP+PL+H+++ P N+LF I ++ FL GY
Sbjct: 581 SNPLEFAQWIGRTKQLPIYVIGTTKRPIPLEHYIHT-P---SNELFKIVDSNRNFLPSGY 636
Query: 281 LAAKEVKCRKQLEKXXXXXXKLNGPFTR-----GAEKNL--FISFLNYLRKSQNLPVVLF 333
+A + K + G + G+ N+ + +N L+ Q LPV++F
Sbjct: 637 NSAYNSLYKTDNNKGGGGGGR-GGHNQQQQQRGGSGNNISGWSKLINTLKDKQQLPVIIF 695
Query: 334 TLSRKRCDQNAANL-LSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392
+ S+ +C + A +L S++ + EKS+I F + S+ L EDD++LPQ+ ++++LL+
Sbjct: 696 SFSKNKCQEYAGSLGQSVNLTQGNEKSQIRVFIEQSLGRLC-EDDKSLPQILQMKELLER 754
Query: 393 GIGVHHSGILPILKEIVEMLFQKGLVK 419
GIGVHH G+LPI+KE+VE+LF K LVK
Sbjct: 755 GIGVHHGGLLPIVKELVEILFSKSLVK 781
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 701 (251.8 bits), Expect = 2.8e-92, Sum P(2) = 2.8e-92
Identities = 144/259 (55%), Positives = 186/259 (71%)
Query: 33 ISNTLPKHVTQTEWAEMLDVSKPVLD-FDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 91
++ + K + + WA D S+ + D F VP MA +PFELD FQK+AI LE+ V
Sbjct: 320 VTGSSDKQLRKEGWATKGD-SQDIADRFYELVPDMAIEFPFELDNFQKEAICCLEKGESV 378
Query: 92 FVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQ 151
FV AHTSAGKTV+AEYA AL+ H TR +YT+PIK +SNQKYRDF F DVGL+TGD
Sbjct: 379 FVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKF-DVGLLTGDVS 437
Query: 152 INTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211
I ASCL+MTTEILRSMLYRG+D++RD+E+VIFDEVHY+ND ERG VWEEV+I+LP+ +
Sbjct: 438 IRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHI 497
Query: 212 CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREA 271
V+LSATVPNT EFADW+G TK+ ++ V T KRPVPL+H L+ +L+ + E
Sbjct: 498 NFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYS-----GELYKVCEN 552
Query: 272 EGEFLTRGYLAAKEVKCRK 290
E FL++G AK+ + +K
Sbjct: 553 E-VFLSKGIKDAKDSQKKK 570
Score = 258 (95.9 bits), Expect = 2.8e-92, Sum P(2) = 2.8e-92
Identities = 55/117 (47%), Positives = 76/117 (64%)
Query: 303 NGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIH 362
NG F R A N ++ +N L K LPVV+F S+ CD+ A L D ++++EKS+I
Sbjct: 626 NGAFRRSAASN-WLLLINKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIR 684
Query: 363 RFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
F + L+ D R LPQV RL+ LL GIGVHH+G+LPI+KE+VEMLF +G++K
Sbjct: 685 VFCDKAFSRLKGSD-RNLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIK 740
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 824 (295.1 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 116 LPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 175
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 176 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 235
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 236 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 295
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 296 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 352
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 353 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 407
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 408 KLDFNTDEEKKMVEEVFSNAIDCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKET 466
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 467 IEILFSEGLIK 477
Score = 38 (18.4 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 18 NSGSNRREVD 27
N+G N+R+VD
Sbjct: 58 NNGKNKRDVD 67
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 114 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 173
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 174 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 233
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 234 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 293
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 294 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 350
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 351 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 405
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 406 KLDFNTDEEKKMVEEVFSNAIDCLSDEDKK-LPQVENVLPLLKRGIGIHHGGLLPILKET 464
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 465 IEILFSEGLIK 475
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 114 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 173
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 174 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 233
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 234 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 293
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 294 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 350
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 351 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 405
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 406 KLDFNTDEEKKMVEEVFSNAIDCLSDEDKK-LPQVENVLPLLKRGIGIHHGGLLPILKET 464
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 465 IEILFSEGLIK 475
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 116 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 175
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 176 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 235
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 236 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 295
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 296 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 352
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 353 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 407
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 408 KLDFNTDEEKKMVEEVFSNAIDCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKET 466
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 467 IEILFSEGLIK 477
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 15 LPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 74
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 75 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 134
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 135 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 194
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 195 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 251
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 252 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 306
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 307 KLDFNTDEEKKMVEEVFSNAIDCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKET 365
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 366 IEILFSEGLIK 376
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + L +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 117 LPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 176
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 177 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 236
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 237 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 296
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 297 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 353
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 354 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 408
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 409 KLDFNTDEEKKMVEEVFSNAIDCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKET 467
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 468 IEILFSEGLIK 478
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 175/371 (47%), Positives = 241/371 (64%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
L + + +V A +PF LD FQ++AI ++ + V V+AHTSAGKTV AEYAI
Sbjct: 114 LPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAI 173
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
AL+ K R I+TSPIKALSNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSM
Sbjct: 174 ALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSM 233
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADW 229
LYRGS+V+R++ +VIFDE+HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W
Sbjct: 234 LYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEW 293
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KC 288
+ + K +V+ T RP PL+H+++ P + L L+ + G+F + A +V +
Sbjct: 294 ICHLHKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRD 350
Query: 289 RKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
L K K G T+G N+F + + + PV++F+ S+K C+ A +
Sbjct: 351 AGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMT 405
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+DF+T EK + F ++I L +ED + LPQV+ + LLK GIG+HH G+LPILKE
Sbjct: 406 KLDFNTDEEKKMVEEVFNNAIDCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKET 464
Query: 409 VEMLFQKGLVK 419
+E+LF +GL+K
Sbjct: 465 IEILFSEGLIK 475
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 181/399 (45%), Positives = 251/399 (62%)
Query: 31 LKISNTLPKHVT-QTEWAE------MLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 83
+ +S +PK + Q E E +L ++ +V A +PF LD FQ++AI+
Sbjct: 78 INLSELMPKVKSEQVETVEGCTHEVVLPANEEYTPLKPRVGKAAKEYPFILDPFQREAIL 137
Query: 84 KLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
++ + V V+AHTSAGKTV AEYAIAL+ K R I+TSPIKALSNQKYR+ E FQDV
Sbjct: 138 CIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDV 197
Query: 144 GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203
GL+TGD IN TASCLVMTTEILRSMLYRGS+V+R++ +VIFDE+HY+ DSERG VWEE
Sbjct: 198 GLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEET 257
Query: 204 LILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKN 263
+ILLP V V LSATVPN +FA+W+ + K +VV T RP PL+H+++ P +
Sbjct: 258 IILLPDNVHHVFLSATVPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYIF--PA-GGD 314
Query: 264 QLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGPFTRGAEK---NLFISFLN 320
L L+ + GEF + A +V R + K + +G K N+F +
Sbjct: 315 GLHLVVDENGEFREDNFNTAMQV-LRDAGDTGGNTGAKWDPKGRKGGTKGPSNVF-KIVK 372
Query: 321 YLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRAL 380
+ + PV++F+ S+K C+ A + +DF+T EK + F ++ L +ED + L
Sbjct: 373 MIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNNATDCLSDEDKK-L 431
Query: 381 PQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
PQV+ + LLK GIG+HH G+LPILKE +E+LF +GL+K
Sbjct: 432 PQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLK 470
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 826 (295.8 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 171/364 (46%), Positives = 245/364 (67%)
Query: 60 DAKVPIM-AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR 118
+ K P++ A T+ FELD FQK++I LE + V V+AHTSAGKTVIAEYAIAL K R
Sbjct: 240 EIKEPLIPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQR 299
Query: 119 TIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLR 178
IYTSPIKALSNQKYRD E F+DVGL+TGD IN AS +VMTTEILRSMLYRGS + +
Sbjct: 300 VIYTSPIKALSNQKYRDLGEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGSSLTK 359
Query: 179 DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKV 238
++++VIFDE+HY+ D +RG +WEE +ILLP V + LSAT+PN ++FA+WV + K
Sbjct: 360 EVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQAC 419
Query: 239 YVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KCRKQLEKXXX 297
++V T RP PL+H++Y P ++ +FLI + +F ++ A V K + +
Sbjct: 420 HIVYTDYRPTPLQHYIY--PTSSES-VFLICDENKDFKKDNFIKAVNVIKEKMNTSEENH 476
Query: 298 XXXKLNGPFTRGAEKNLF-ISFLNYLRKSQNL-PVVLFTLSRKRCDQNAANLLSMDFSTA 355
+N +T+ K + I + + S+N P+++F S+K C+ NA + +D ++
Sbjct: 477 HQQHIN-KYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSD 535
Query: 356 TEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQK 415
TEK I ++++IR L +DDR+LPQV+ + LL GIG+HH G+LPI+KEI+E++FQ+
Sbjct: 536 TEKEVIKELYENAIRILA-DDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQE 594
Query: 416 GLVK 419
L+K
Sbjct: 595 SLLK 598
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 793 (284.2 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 165/360 (45%), Positives = 228/360 (63%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A T+PF LD FQ AI ++ V V+AHTSAGKTV+AEYAIA S +K R IYTSPIK
Sbjct: 143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIK 202
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQKYR+ F DVGL+TGD IN A CLVMTTEILRSMLYRGS+V+R++ +VIFD
Sbjct: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 262
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
EVHY+ D ERG VWEE +ILLP +V V LSAT+PN +EFA+W+ ++V T R
Sbjct: 263 EVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR 322
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQL-------EKXXXXX 299
P PL+H+L+ P + ++L+ + + F + A Q+ +
Sbjct: 323 PTPLQHYLF--PA-HGDGIYLVVDEKSTFREENFQKAM-ASISNQIGDDPNSTDSRGKKG 378
Query: 300 XKLNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359
G +G K + + K + PV++F+ S++ C++ A + +DF++ EK
Sbjct: 379 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 438
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ + F ++I L E DR LPQ+K + LL+ GIG+HHSG+LPILKE++E+LFQ+G +K
Sbjct: 439 ALTKIFNNAIALLP-ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 497
Score = 37 (18.1 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQ 414
KRLE+L+K + V ++ LKE +E + +
Sbjct: 1029 KRLEELVKELVDVANTIGNSSLKEKMEAVLK 1059
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 171/358 (47%), Positives = 230/358 (64%)
Query: 64 PIM-AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYT 122
PI A T+PF+LD FQ +I +E + V V+AHTSAGKTV+AEY+IA + R IYT
Sbjct: 201 PIKPARTYPFKLDPFQATSIACIERNESVLVSAHTSAGKTVVAEYSIATALRDGQRVIYT 260
Query: 123 SPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEY 182
SPIKALSNQK+RD +ETFQDVGL+TGD IN ASCLVMTTEILRSMLYRGS+ +R++ +
Sbjct: 261 SPIKALSNQKFRDLQETFQDVGLMTGDITINANASCLVMTTEILRSMLYRGSETMREVSW 320
Query: 183 VIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVS 242
VIFDE+HY+ D ERG VWEE +ILLP V V LSAT+PN EFA W+ K +VV
Sbjct: 321 VIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAREFAAWIAKIHKQPCHVVY 380
Query: 243 TLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXX-XXK 301
T RP+PL+H+++ + L L+ + G F +L K + +Q E +
Sbjct: 381 TEYRPIPLQHYIFPSG---GDGLHLVVDENGVFREENFL--KSLSNLQQPEMGGQSGASR 435
Query: 302 LNGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI 361
G +G I + R Q PV++F+ S+K C+ A + +DF+ EK+ +
Sbjct: 436 KRGGGNKGPSDCYKIVKMIMERNYQ--PVIIFSFSKKECETYALQMSKLDFNNDDEKNAV 493
Query: 362 HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
F ++I +L +E D+ LP V + LLK GIG+HH+G+LPILKEI+E+LFQ G +K
Sbjct: 494 ETIFNNAIDSL-SESDKQLPAVINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIK 550
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 168/366 (45%), Positives = 238/366 (65%)
Query: 55 PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN 114
P+ F VP A +PF LD FQ+QAI+ ++ V V+AHTSAGKTV+AEYAIA S
Sbjct: 136 PLKPFSG-VP--AKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLA 192
Query: 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGS 174
K R IYT+PIKALSNQK+R+F + F+DVGLVTGD IN +ASCL+MTTEILR+MLYRGS
Sbjct: 193 AKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGS 252
Query: 175 DVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTK 234
+++R++ +V+FDE+HY+ D ERG VWEE LILLP V V LSAT+PN +FA+WV +
Sbjct: 253 EIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLH 312
Query: 235 KTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEK 294
K +VV T RP PL+H+++ P + + LI + +G+F + A V
Sbjct: 313 KQPCHVVYTDYRPTPLQHYIF--PA-GGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAG 369
Query: 295 XXXXXXKLNG-PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFS 353
+ G T + N+F + + + PV++F+ S+K C+ A + +DF+
Sbjct: 370 KGDQKGRHGGIKGTNAGQTNIF-KIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFN 428
Query: 354 TATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
T EK + F +++ ++ E+DR LPQV+ + LL+ GIG+HH G+LPILKE +E+LF
Sbjct: 429 TPDEKKLVDEVFNNAM-DVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILF 487
Query: 414 QKGLVK 419
+GL+K
Sbjct: 488 GEGLIK 493
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 167/361 (46%), Positives = 233/361 (64%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A WPF LD FQ+ A+ ++ V V+AHTSAGKTV+AEYAIA S + R IYTSPIK
Sbjct: 146 ARVWPFTLDPFQQVAVSSIQRGESVLVSAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIK 205
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQKYR+F F DVGL+TGD IN TA+CLVMTTEILRSMLYRGS+++R++ +V+FD
Sbjct: 206 ALSNQKYREFAAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMREVAWVVFD 265
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
E+HY+ D+ RG VWEE +ILLP +V V LSAT+PN ++FA+W+ +VV T R
Sbjct: 266 EIHYMRDATRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPCHVVYTDFR 325
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGP- 305
P PL+H+ + P + + LI + +G F + A K+ + K G
Sbjct: 326 PTPLQHYFF--PAGSEG-MHLIVDEKGVFREENFQKAMSSIADKKGDDPADALAKRKGKG 382
Query: 306 ----FTRGA--EKNLFISFLNYLR-KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEK 358
+G EK+ + + KS N PV++F+ S++ C+ A + S+ F+ +EK
Sbjct: 383 KDKKLNKGGTQEKDDIYKIVKMIMLKSLN-PVIVFSFSKRECEFYALKMKSLAFNDDSEK 441
Query: 359 SKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLV 418
+ + F +I L +E+DR LPQ++ + LL+ GIGVHHSG+LPILKE +E+LFQ+GL+
Sbjct: 442 EMVSKVFNSAIEML-SEEDRNLPQIQNILPLLRRGIGVHHSGLLPILKETIEILFQEGLI 500
Query: 419 K 419
K
Sbjct: 501 K 501
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 168/352 (47%), Positives = 232/352 (65%)
Query: 69 TWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKAL 128
++PF +F ++ + L + V V+AHTSAGKTV AEYAIAL+ K R I+TSPIKAL
Sbjct: 135 SFPFSYSIFYREMVECLTINQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKAL 194
Query: 129 SNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188
SNQKYR+ E FQDVGL+TGD IN TASCLVMTTEILRSMLYRGS+V+R++ +VIFDE+
Sbjct: 195 SNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEI 254
Query: 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 248
HY+ DSERG VWEE +ILLP V V LSAT+PN +FA+W+ + K +V+ T RP
Sbjct: 255 HYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPT 314
Query: 249 PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KCRKQLEKXXXXXXKLNGPFT 307
PL+H+++ P + L L+ + G+F + A +V + L K K G T
Sbjct: 315 PLQHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRK-GG--T 368
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD 367
+G N+F + + + PV++F+ S+K C+ A + +DF+T EK + F +
Sbjct: 369 KGPS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNN 426
Query: 368 SIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+I L +ED + LPQV+ + LLK GIG+HH G+LPILKE +E+LF +GL+K
Sbjct: 427 AIDCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIK 477
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 170/360 (47%), Positives = 229/360 (63%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A +PF LD FQ +AI L+ V V+AHTSAGKTV+A YAIA+S R IYTSPIK
Sbjct: 61 AKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIK 120
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQKYRDF+E F DVGL+TGD I+ ASCLVMTTEILRSM Y+GS+++R++ ++IFD
Sbjct: 121 ALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFD 180
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
EVHY+ DSERG VWEE +++ PK V LSATVPN EFADWV + ++V T R
Sbjct: 181 EVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYR 240
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKL-NGP 305
P PL+H YV P N L+L+ + + +F + K L K NG
Sbjct: 241 PTPLQH--YVFPA-GGNGLYLVVDEKSKFHEDSFQ-----KSLNALVPTNESDKKRDNGK 292
Query: 306 FTRG------AEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359
F +G E++ + + + Q PV+LF+ S+K C+ A + M ++ EK
Sbjct: 293 FQKGLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKD 352
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ F +I ++ ++DD+ LPQV + +LK GIGVHHSG+LPILKE++E+LFQ+GL+K
Sbjct: 353 AVETIFASAI-DMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIK 411
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 796 (285.3 bits), Expect = 3.7e-79, P = 3.7e-79
Identities = 165/371 (44%), Positives = 235/371 (63%)
Query: 55 PVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQN 114
P+ + +P A T+PF LD FQ +I +E V V+AHTSAGKTV+AEYA+A S
Sbjct: 181 PISKHKSPIP-PARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLR 239
Query: 115 HKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGS 174
K R IYTSPIKALSNQKYR+ F DVGL+TGD IN A+CLVMTTEILRSMLYRGS
Sbjct: 240 DKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGS 299
Query: 175 DVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTK 234
+V+R++ +VIFDE+HY+ D ERG VWEE +ILLP + V LSAT+PN ++FA+W+
Sbjct: 300 EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIH 359
Query: 235 KTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEK 294
+ +VV T RP PL+H+L+ + + L+ + + F + A KQ +
Sbjct: 360 RQPCHVVYTDFRPTPLQHYLFPSG---SDGIHLVVDEKSNFREENFQRAMSALMEKQGDD 416
Query: 295 XXXXXXKLN---GPFTRGAEK---NLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
K N G +G K +++ + K+ N PV++F+ S++ C+ A +
Sbjct: 417 PAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYN-PVIVFSFSKRECEALALQMS 475
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
+D + TE+ + F +++ L +E DR LPQ++ + LL+ GIG+HHSG+LPILKE+
Sbjct: 476 KLDMNDQTERDLVTTIFNNAVNQL-SEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEV 534
Query: 409 VEMLFQKGLVK 419
+E+LFQ+GL+K
Sbjct: 535 IEILFQEGLLK 545
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 162/353 (45%), Positives = 229/353 (64%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A +PF+LD FQKQAI+ ++ + V V+AHTSAGKTV+A YAIA K R IYTSPIK
Sbjct: 119 AKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIK 178
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQKYR+ E F+DVGL+TGD +N ASCLVMTTEILRSMLYRGS++++++ +V++D
Sbjct: 179 ALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYD 238
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
E+HY+ D ERG VWEE +IL+ K + LSAT+PN +FA WV + K+ V VV T R
Sbjct: 239 EIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYR 298
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGPF 306
P PL+H++Y PV + ++ + +GEF + A + + G
Sbjct: 299 PTPLQHWIY--PVGGEG-MYEVVNVKGEFREDKFRDAMSGLATAG-DSAGSFNKRRTGGG 354
Query: 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQ 366
T+G + N+ + + + + L ++F+ SRK C+ A +L MDF+ EK + ++
Sbjct: 355 TQG-DSNV-LKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYE 412
Query: 367 DSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+I L ED + LPQ+ + LL+ GIGVHHSG++PILKE +E+LF +GLVK
Sbjct: 413 SAIAQLSPEDQK-LPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVK 464
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 158/359 (44%), Positives = 240/359 (66%)
Query: 66 MAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPI 125
MA T+PF+LD FQ ++ LE + V+AHTSAGKT +AEYAIA++ K R IYTSP+
Sbjct: 74 MAKTYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 133
Query: 126 KALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIF 185
KALSNQKYR+ + F+DVGL+TGD ++ ASCLVMTTEILR+MLYRGS+VL+++ +VIF
Sbjct: 134 KALSNQKYRELQHEFKDVGLMTGDVTLSPNASCLVMTTEILRAMLYRGSEVLKEVAWVIF 193
Query: 186 DEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK 245
DE+HY+ D ERG VWEE +I LP + +V LSAT+ N EFA+W+ K +VV T
Sbjct: 194 DEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQPCHVVYTDF 253
Query: 246 RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCR-KQLEKXXXXXXKLNG 304
RP PL+H+ + P + L+L+ + +F ++ ++ + K + K G
Sbjct: 254 RPTPLQHYAF--P-MGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDGKKSANGKSGG 310
Query: 305 PFTRGA----EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK 360
+G + +++ + + + + PV++F+ SR+ C+Q+A ++ +DF+T EK
Sbjct: 311 RGAKGGGGPGDSDVY-KIVKMIMERKFEPVIIFSFSRRECEQHALSMSKLDFNTDEEKEV 369
Query: 361 IHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ + F ++++ L NE+DR+LP ++ + LL+ GI VHHSG+LP++KE+VE+LFQ+GLVK
Sbjct: 370 VEQVFNNAMQCL-NEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVK 427
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 780 (279.6 bits), Expect = 2.4e-77, P = 2.4e-77
Identities = 167/362 (46%), Positives = 234/362 (64%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A T+PF LD FQ AI ++ + V V+AHTSAGKTV+AEYAIA S K R IYTSPIK
Sbjct: 178 ARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK 237
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQK+R+ + F DVGL+TGD IN A CLVMTTEILRSMLYRGS+V+R++ +V+FD
Sbjct: 238 ALSNQKFRELQAIFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMREVAWVVFD 297
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
EVHY+ D RG VWEE +ILLP +V V LSAT+PN +EFA+W+ +VV T R
Sbjct: 298 EVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVYTDFR 357
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKE-VKCRKQLEKXXXXXXKLN-- 303
P PL+H+L+ P + + L+ + +G F + A + + + N
Sbjct: 358 PTPLQHYLF--PA-GGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSGRGNKK 414
Query: 304 GPFTRG-----AEKNLF-ISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATE 357
G +G + +++ I + Y++K PV++F+ S++ C+ A + +DF+T E
Sbjct: 415 GKTNKGRNHQDGKGDIYKIVKMIYMKKYN--PVIVFSFSKRDCESLALKMSKLDFNTDEE 472
Query: 358 KSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGL 417
++ + + F ++I L E DR LPQ+K + LLK GIG+HHSG+LPILKEI+E+LFQ+G
Sbjct: 473 RNSLTQIFYNAIELLP-EADRELPQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGF 531
Query: 418 VK 419
+K
Sbjct: 532 LK 533
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 158/353 (44%), Positives = 224/353 (63%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A T+PFELD FQ AI +E V V+AHTSAGKTVIAEYAIA + ++ R IYTSPIK
Sbjct: 119 AKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIK 178
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
+LSNQKYR+ F DVGL+TGD IN +ASCL+MTTEILR+MLY+ S+++ ++ +VIFD
Sbjct: 179 SLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFD 238
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
EVHY+ D +RG VWEE LILLP + + LSAT+PN L+FA W+ K +VV T R
Sbjct: 239 EVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYR 298
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGPF 306
P PL+HF+Y P + ++++ + + +F T + EV ++ K
Sbjct: 299 PTPLQHFIY--PQ-GADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSK----- 350
Query: 307 TRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQ 366
+ + + +N + ++ P+++F S+K C+ NA +D + K + F
Sbjct: 351 -KVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFD 409
Query: 367 DSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+I L +E+DR L Q + + LL GIG+HHSG+LPILKE+VE+LFQ+GLV+
Sbjct: 410 SAINQL-SEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVR 461
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 756 (271.2 bits), Expect = 1.3e-74, P = 1.3e-74
Identities = 158/360 (43%), Positives = 230/360 (63%)
Query: 67 AHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIK 126
A + F+LD FQ ++ +E V V+AHTSAGKTV+AEYAIA R IYTSPIK
Sbjct: 170 ARKYAFKLDPFQSISVASIERDESVLVSAHTSAGKTVVAEYAIAHCLKRNQRVIYTSPIK 229
Query: 127 ALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
ALSNQK+RDF+ F DVGL+TGD IN TASCLVMTTEILRSMLYRGS++ R++ +V+FD
Sbjct: 230 ALSNQKFRDFQAEFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEITREVGWVVFD 289
Query: 187 EVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
E+HY+ D+ RG VWEE +I+LP +V V LSAT+PN +FA+W+ + +VV T R
Sbjct: 290 EIHYMRDATRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFR 349
Query: 247 PVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNGPF 306
P PL++ YV P + ++++ + +G F + ++ A K + K G
Sbjct: 350 PTPLQN--YVFPA-GGDGIYIMVDEKGVFREKKFMEAIGSIAGKNDDDDSMPRQKGKGK- 405
Query: 307 TRGAEKNL-------FISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKS 359
+ A KN + + + PV++F S++ C+ A + +++F+ +E+
Sbjct: 406 NKKAVKNTVPDSKADITKIIKMIMRRAYHPVIVFNFSKRECENLALKVSTLNFNHESEQK 465
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ F+++I +L +E+D+ LPQ++ L LLK GIGVHHSG+LPILKE +E+LFQ+ L+K
Sbjct: 466 LVEDIFRNAIMSL-SEEDQGLPQIQHLLPLLKKGIGVHHSGLLPILKETIEILFQENLIK 524
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 620 (223.3 bits), Expect = 8.4e-60, P = 8.4e-60
Identities = 139/334 (41%), Positives = 209/334 (62%)
Query: 88 HNHVFVTAHTSAGKTV-IAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLV 146
+N++F A +G T+ + +YAIAL+ K R I+TSPIKALSNQKYR+ E FQDVGL+
Sbjct: 144 NNYMF--ARIWSGSTITLLKYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLM 201
Query: 147 TGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206
TGD IN TASCLVMTTEILRSMLYRGS+V+R++ +VIFDE+HY+ DSE+G+ + ++
Sbjct: 202 TGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSEKGNFEDIFIVA 261
Query: 207 LPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLF 266
+P +++ + FA+ + + K +V+ T RP PL+H+++ P + L
Sbjct: 262 IPGNTLYIIMELSYYLGDGFAEKIIFSIKQPCHVIYTDYRPTPLQHYIF--PA-GGDGLR 318
Query: 267 LIREAEGEFLTRGYLAAKEV-KCRKQLEKXXXXXXKLNGPFTRGAEKNLFISFLNYLRKS 325
L+ + G+F + A +V + L K K G T+G N+F + + +
Sbjct: 319 LVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRK-GG--TKGPS-NVF-KIVKMIMER 373
Query: 326 QNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKR 385
PV++F+ S+K C+ A + +DF+T EK + F ++I L +ED + LPQV+
Sbjct: 374 NFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKK-LPQVEH 432
Query: 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ LLK GIG+HH G+LPILKE +E+LF +GL+K
Sbjct: 433 VLPLLKRGIGIHHGGLLPILKETIEILFSEGLIK 466
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 515 (186.3 bits), Expect = 1.2e-48, P = 1.2e-48
Identities = 132/357 (36%), Positives = 191/357 (53%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSN 130
PF LD FQ++A LE + V V A T AGKTV+ E+A+ L+ ++ YT+P+KALSN
Sbjct: 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSN 74
Query: 131 QKYRDFRETF-QD-VGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEV 188
QK+ D + +D +GL+TGD +N A +VMTTE+LR+MLY S L+ L YV+ DEV
Sbjct: 75 QKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEV 134
Query: 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPV 248
H++ D RG VWEEV++ LP +V +V LSATV N EF W+ + VV RPV
Sbjct: 135 HFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDE-HRPV 193
Query: 249 PLKHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNG---P 305
PL + VG + + I EAEG+ L + + R++ ++ + G P
Sbjct: 194 PLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELL-RHIAHRREADRMADWQPRRRGSGRP 252
Query: 306 -FTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS--MDFSTATEKSKIH 362
F R + I+ L+ LP + F SR CD L + ++ E+++I
Sbjct: 253 GFYRPPGRPEVIAKLD---AEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIA 309
Query: 363 RFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+L + D L + E LL+ G+ HH+G+LP + VE LF GLVK
Sbjct: 310 EVIDHRCGDLADSDLAVLGYYEWREGLLR-GLAAHHAGMLPAFRHTVEELFTAGLVK 365
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 421 (153.3 bits), Expect = 3.2e-38, P = 3.2e-38
Identities = 108/254 (42%), Positives = 154/254 (60%)
Query: 51 DVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA 110
D ++D D + I + F +D FQ+ AI + V V+A TS+GKT+IAE A A
Sbjct: 136 DFGVEMIDIDELISI----YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAE-AAA 190
Query: 111 LSQNHKTRTI-YTSPIKALSNQKYRDFRETFQD--VGLVTGDFQINTTASCLVMTTEILR 167
+S K R + YT+P+KALSNQK+R+FRETF D VGL+TGD IN A ++MTTEILR
Sbjct: 191 VSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILR 250
Query: 168 SMLYRGSDV------LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVP 221
+MLY+ + L ++ ++ DEVHY++D RG VWEE++I PKEV ++ LSATV
Sbjct: 251 NMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVA 310
Query: 222 NTLEFADWVGNTKKTKVYVVSTLKRPVPL------KHFLYVGPVLEKNQLFLIREAEGEF 275
N E A W+G K +V++ +RPVPL KH L P+L++ + + R+ +
Sbjct: 311 NPDELAGWIGEIHG-KTELVTSTRRPVPLTWYFSTKHSLL--PLLDEKGINVNRKLSLNY 367
Query: 276 LTRGYLAAKEVKCR 289
L L+A E + R
Sbjct: 368 LQ---LSASEARFR 378
Score = 257 (95.5 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 84/267 (31%), Positives = 129/267 (48%)
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVY 239
++ ++ DEVHY++D RG VWEE++I PKEV ++ LSATV N E A W+G K
Sbjct: 269 VDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHG-KTE 327
Query: 240 VVSTLKRPVPL------KHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEVKCRKQLE 293
+V++ +RPVPL KH L P+L++ + + R+ +L L+A E + R +
Sbjct: 328 LVTSTRRPVPLTWYFSTKHSLL--PLLDEKGINVNRKLSLNYLQ---LSASEARFRDDDD 382
Query: 294 KXXXXXXKLNGPFT------RGAEKNLFISFLNYLRKSQ--------------N-LPVVL 332
K G T + L + +N +R+SQ N LP +
Sbjct: 383 GYRKRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNMLPAIW 442
Query: 333 FTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKN 392
F +R+ CD + + EKS++ + R L + R + E+ L
Sbjct: 443 FIFNRRGCDAAVQYVENFQLLDDCEKSEVELALK-KFRVLYPDAVR-----ESAEKGLLR 496
Query: 393 GIGVHHSGILPILKEIVEMLFQKGLVK 419
GI HH+G LP+ K +E LFQ+GLVK
Sbjct: 497 GIAAHHAGCLPLWKSFIEELFQRGLVK 523
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 394 (143.8 bits), Expect = 9.0e-36, P = 9.0e-36
Identities = 89/230 (38%), Positives = 135/230 (58%)
Query: 191 INDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL 250
+ DSERG VWEE +ILLP V V LSAT+PN +FA+W+ + K +V+ T RP PL
Sbjct: 1 MRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPL 60
Query: 251 KHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-KCRKQLEKXXXXXXKLNGPFTRG 309
+H+++ P + L L+ + G+F + A +V + L K K G T+G
Sbjct: 61 QHYIF--PA-GGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRK-GG--TKG 114
Query: 310 AEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSI 369
N+F + + + PV++F+ S+K C+ A + +DF+T EK + F ++I
Sbjct: 115 PS-NVF-KIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI 172
Query: 370 RNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L +ED + LPQV+ + LLK GIG+HH G+LPILKE +E+LF +GL+K
Sbjct: 173 DCLSDEDKK-LPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIK 221
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 367 (134.2 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 80/178 (44%), Positives = 113/178 (63%)
Query: 246 RPVPLKHFLYVGPVLE-KNQLFLIREAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKLNG 304
+ V L+H+L+ G + + +LFL+ ++ G F T+GY AA E K + + K
Sbjct: 117 KEVLLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ-- 174
Query: 305 PFTRGA---EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI 361
P +G ++ +++S L LR LPVV+FT SR RCD+ A+ L S+D +T++EKS+I
Sbjct: 175 PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI 234
Query: 362 HRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
H F Q + L+ D R LPQV + +LL G+GVHHSGILPILKEIVEMLF +GLVK
Sbjct: 235 HLFLQRCLARLRGSD-RQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVK 291
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 223 (83.6 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
Identities = 66/187 (35%), Positives = 97/187 (51%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 129
F+ D +Q++ + L+ VFV A TS+GKT I+ YA+ L N IY +P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 130 NQK----YRDFRETFQDVG-----LVTGDFQINTTASCLVMTT--EILRSMLYR---GSD 175
NQ Y F + + G + T D++IN +C V+ T +L+SML + +
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853
Query: 176 VLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTK 234
+ +IFDE+H I E G V E++L+L P C IV LSATV N EF W+ +
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP---CPIVALSATVGNPQEFQVWLSALQ 910
Query: 235 KTKVYVV 241
+ Y +
Sbjct: 911 RAHSYPI 917
Score = 77 (32.2 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 349 SMDFSTATEKSKIHRFFQDSIRNLQNEDDR-ALPQVKRLEQLLKNGIGVHHSGILPILKE 407
S +FS A KS + ++ R+L+ R A+P+ ++ L + GIG+HHSG+ ++
Sbjct: 1183 SPEFSFAGAKSTYGK--EELYRDLEALRRRQAVPEWY-VDALYR-GIGIHHSGLNRRYRQ 1238
Query: 408 IVEMLFQKG 416
IVE+LF+ G
Sbjct: 1239 IVEVLFRCG 1247
Score = 57 (25.1 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 20/94 (21%), Positives = 39/94 (41%)
Query: 303 NGPFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIH 362
N ++ A + L L + LP + F R+ C+ L + F T EK +
Sbjct: 1066 NSAYSLDAISQNLLPMLKDLHSKELLPAICFNYDRQECEY----LAEIVFKTLVEKEREW 1121
Query: 363 RF----FQDSIRNLQNEDDRALPQVKRLEQLLKN 392
R +++ +R + A + K++E+ K+
Sbjct: 1122 RENSEEWKEKMREYKKWQSTANQRAKQMEKFEKS 1155
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 212 (79.7 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 67/183 (36%), Positives = 102/183 (55%)
Query: 70 WPFEL-DVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIA--LSQN--HKTRTIYTS 123
+PFEL + Q ++ + + N +V V+A T +GKT I E AI LSQN + IY +
Sbjct: 249 FPFELFNAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQNTDQNFKVIYVA 308
Query: 124 PIKALSNQKYRDFRETFQDVGL----VTGD-FQINTT----ASCLVMTTEILRSMLYRGS 174
P KAL +++ RD+ F+ + L +TGD F + + A +V T E L S+ R
Sbjct: 309 PTKALCSERARDWESKFRHLNLTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSITRRWE 368
Query: 175 DV--LRDL-EYVIFDEVHYINDSERGHVWEEVLILLPKEVC---IVMLSATVPNTLEFAD 228
D L DL + V+ DEVH++ D+ RG E ++ + +V +V LSATVPN+ + A
Sbjct: 369 DYRKLLDLVQLVLIDEVHFLKDT-RGATLEVLICRMKTQVSNIRVVALSATVPNSEDVAK 427
Query: 229 WVG 231
W+G
Sbjct: 428 WLG 430
Score = 79 (32.9 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 23/92 (25%), Positives = 45/92 (48%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVK 384
SQ P+++F +RK C+ A L + S A +K + +N++ +D
Sbjct: 486 SQKKPIIVFCFTRKSCELTAKKLSQLWISMADDKKP----WPGPGQNMKVTNDG------ 535
Query: 385 RLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
L+Q+++ G+ HH+G+ + VE + +G
Sbjct: 536 -LQQVMQQGVAFHHAGLEQQDRLAVEKAYLEG 566
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 228 DWVGNTKKTKVYVVSTLKR-PVPLK-HFLYVGPV 259
DW G + K+ +TL + HF Y G V
Sbjct: 1026 DWKGRADRAKLIFSATLSSGETEISCHFHYEGLV 1059
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 205 (77.2 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 63/199 (31%), Positives = 102/199 (51%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 129
F D +Q++ + ++ N + A TSAGKT ++ Y I L + +Y +P KAL
Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842
Query: 130 NQK----YRDFRETFQDVGL-----VTGDFQINTTASCLVMTT--EILRS-MLYRGSDVL 177
NQ Y FR G+ +T ++ N C V+ T E L+ ML R V
Sbjct: 843 NQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAM-QCQVLITVPECLQELMLSRTPAVQ 901
Query: 178 R---DLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTK 234
+ ++YV+FDEVH I SE H+WE++L+L+ + + LSAT+ N + +W+ +++
Sbjct: 902 KFVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLHEWLNSSE 959
Query: 235 KTKVYVVSTLKRPVPLKHF 253
+ K S KR V L ++
Sbjct: 960 QAK----SAGKRKVELINY 974
Score = 69 (29.3 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
L +L + GIG HH+G+ + + VE+LF+ G
Sbjct: 1274 LLKLFERGIGYHHAGLNTVERGAVEVLFRSG 1304
Score = 46 (21.3 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 305 PFTRGAEKNLFI-SFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347
PF + N +I + ++ L++ LP + F R C++ A L
Sbjct: 1120 PFNKEKIANDYIVTLVDDLKEKGELPAICFNDDRHVCEKLAVTL 1163
Score = 38 (18.4 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 338 KRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQ 373
+R ++ N++ M T SK+ R S+ NLQ
Sbjct: 1349 RRGFDHSGNVIFMSIPT----SKVRRLLTASLSNLQ 1380
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 178 (67.7 bits), Expect = 8.1e-14, Sum P(3) = 8.1e-14
Identities = 52/187 (27%), Positives = 95/187 (50%)
Query: 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQK 132
D +Q++ + ++ + + A TS+GKT + Y + L ++++ +Y +P KAL NQ
Sbjct: 357 DTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQV 416
Query: 133 YRDFRETFQ------DV--GLVTGDFQINTTASCLVMTT----EILRSMLYRGSDVLRDL 180
+ + +V G+ T D+ S +++T EIL +R + V R +
Sbjct: 417 AATVQNRYTKNMPAGEVLCGVFTSDYHHEALNSQVLITMPACFEILLLAPHRQNWVKR-I 475
Query: 181 EYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTKKTKVY 239
YVIFDEVH I R +WE +L+++ C + LSAT+ N +W+ + K+
Sbjct: 476 RYVIFDEVHCIGGEIRAEIWEHLLVMIR---CPFLALSATISNPQHLTEWLQSVKRYWKQ 532
Query: 240 VVSTLKR 246
+ ST+++
Sbjct: 533 IDSTMEQ 539
Score = 84 (34.6 bits), Expect = 8.1e-14, Sum P(3) = 8.1e-14
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L++L + GIG HHS + K++VE+LF+KG ++
Sbjct: 845 LKKLARRGIGYHHSSMTNKEKQLVEILFRKGFIR 878
Score = 43 (20.2 bits), Expect = 8.1e-14, Sum P(3) = 8.1e-14
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 309 GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANL 347
G + F + LRK + LP V F S ++ A ++
Sbjct: 700 GQMLDFFPCLVEKLRKMEKLPAVFFLFSLDTVEECAESV 738
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 163 (62.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 25 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 83
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 1279 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1337
Query: 84 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 140
+ ++VFV A T +GKT+ AE+AI L QN + R +Y +P++AL+ Q Y D+ E F
Sbjct: 1338 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKF 1397
Query: 141 QD-----VGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIFDEVH 189
QD V L+TG D ++ S +V T E + S ++ ++++ + DEVH
Sbjct: 1398 QDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1457
Query: 190 YINDSERGHVWEEV 203
I E G V E +
Sbjct: 1458 LIG-GENGPVLEVI 1470
Score = 111 (44.1 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 43/165 (26%), Positives = 80/165 (48%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQI---NTTASCLVMTTEILRSML 170
+ IY +P+++L + F + G+ +TGD Q+ +A+ +++ T ++
Sbjct: 537 KIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDII 596
Query: 171 YR--GSDVLRDL-EYVIFDEVHYINDSERGHVWEEVLI-------LLPKEVCIVMLSATV 220
R G L VI DE+H ++D +RG V E ++ + ++V ++ LSAT+
Sbjct: 597 TRKGGERTYTQLVRLVILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATL 655
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
PN + A ++ ++ RPVPL+ YVG + EK +
Sbjct: 656 PNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQ-TYVG-ITEKKAI 698
Score = 103 (41.3 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQ 382
+ S PV++F SRK+ A ++L+ + + +H +D I L+ D L
Sbjct: 1552 KHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK- 1610
Query: 383 VKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
E LL NG+G H G+ P+ + +VE LF G ++
Sbjct: 1611 ----ETLL-NGVGYLHEGLSPLERRLVEQLFSSGAIQ 1642
Score = 83 (34.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 35/133 (26%), Positives = 61/133 (45%)
Query: 133 YRDFRETF-QDVGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIF 185
Y F++ + V L+TG D ++ S +V T E + S ++ ++++ +
Sbjct: 1394 YEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVV 1453
Query: 186 DEVHYINDSERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKV 238
DEVH I E G V E + + + + IV LS+++ N + A W+G T
Sbjct: 1454 DEVHLIG-GENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG-CSATST 1511
Query: 239 YVVSTLKRPVPLK 251
+ RPVPL+
Sbjct: 1512 FNFHPNVRPVPLE 1524
Score = 72 (30.4 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE-- 387
V++F SRK + A + M EK + F ++ + + A Q K LE
Sbjct: 721 VLVFVHSRKETGKTARAIRDM----CLEKDTLGLFLREGSASTEVLRTEA-EQCKNLELK 775
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
LL G +HH+G+ + + +VE LF
Sbjct: 776 DLLPYGFAIHHAGMTRVDRTLVEDLF 801
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 159 (61.0 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 57/194 (29%), Positives = 94/194 (48%)
Query: 25 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 83
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 1282 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1340
Query: 84 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 140
+ ++VFV A T +GKT+ AE+AI L QN + R +Y +P++AL+ Q Y D+ E F
Sbjct: 1341 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKF 1400
Query: 141 QD-----VGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIFDEVH 189
QD V L+TG D ++ + ++ T E + S ++ ++++ + DEVH
Sbjct: 1401 QDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1460
Query: 190 YINDSERGHVWEEV 203
I E G V E +
Sbjct: 1461 LIG-GENGPVLEVI 1473
Score = 109 (43.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 41/165 (24%), Positives = 80/165 (48%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQI---NTTASCLVMTTEILRSML 170
+ IY +P+++L + F + G+ +TGD Q+ +A+ +++ T ++
Sbjct: 537 KIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDII 596
Query: 171 YR--GSDVLRDL-EYVIFDEVHYINDSERGHVWEEVLI-------LLPKEVCIVMLSATV 220
R G L ++ DE+H ++D +RG V E ++ + ++V ++ LSAT+
Sbjct: 597 TRKGGERTYTQLVRLIVLDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATL 655
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
PN + A ++ ++ RPVPL+ YVG + EK +
Sbjct: 656 PNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQ-TYVG-ITEKKAI 698
Score = 102 (41.0 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQ 382
+ S PV++F SRK+ A ++L+ + + +H +D I L+ D L
Sbjct: 1555 KHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK- 1613
Query: 383 VKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
E LL NG+G H G+ P+ + +VE LF G ++
Sbjct: 1614 ----ETLL-NGVGYLHEGLSPMERRLVEQLFSSGAIQ 1645
Score = 79 (32.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/133 (24%), Positives = 61/133 (45%)
Query: 133 YRDFRETF-QDVGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIF 185
Y F++ + V L+TG D ++ + ++ T E + S ++ ++++ +
Sbjct: 1397 YEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVV 1456
Query: 186 DEVHYINDSERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKV 238
DEVH I E G V E + + + + IV LS+++ N + A W+G T
Sbjct: 1457 DEVHLIG-GENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG-CSATST 1514
Query: 239 YVVSTLKRPVPLK 251
+ RPVPL+
Sbjct: 1515 FNFHPNVRPVPLE 1527
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE-- 387
V++F SRK + A + M EK + F ++ + + A Q K LE
Sbjct: 721 VLVFVHSRKETGKTARAIRDM----CLEKDTLGLFLREGSASTEVLRTEA-EQCKNLELK 775
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
LL G +HH+G+ + + +VE LF
Sbjct: 776 DLLPYGFAIHHAGMTRVDRTLVEDLF 801
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 154 (59.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 56/194 (28%), Positives = 94/194 (48%)
Query: 25 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 83
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 1279 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1337
Query: 84 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 140
+ ++VFV A T +GKT+ AE+AI L Q+ + R +Y +P++AL+ Q Y D+ E F
Sbjct: 1338 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKF 1397
Query: 141 QD-----VGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIFDEVH 189
QD V L+TG D ++ + ++ T E + S ++ ++++ + DEVH
Sbjct: 1398 QDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1457
Query: 190 YINDSERGHVWEEV 203
I E G V E +
Sbjct: 1458 LIG-GENGPVLEVI 1470
Score = 110 (43.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 42/165 (25%), Positives = 80/165 (48%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQI---NTTASCLVMTTEILRSML 170
+ IY +P+++L + F + G+ +TGD Q+ +A+ +++ T ++
Sbjct: 537 KIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDII 596
Query: 171 YR--GSDVLRDL-EYVIFDEVHYINDSERGHVWEEVLI-------LLPKEVCIVMLSATV 220
R G L +I DE+H ++D +RG V E ++ + ++V ++ LSAT+
Sbjct: 597 TRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATL 655
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
PN + A ++ ++ RPVPL+ YVG + EK +
Sbjct: 656 PNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQ-TYVG-ITEKKAI 698
Score = 102 (41.0 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQ 382
+ S PV++F SRK+ A ++L+ + + +H +D I L+ D L
Sbjct: 1552 KHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK- 1610
Query: 383 VKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
E LL NG+G H G+ P+ + +VE LF G ++
Sbjct: 1611 ----ETLL-NGVGYLHEGLSPMERRLVEQLFSSGAIQ 1642
Score = 79 (32.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/133 (24%), Positives = 61/133 (45%)
Query: 133 YRDFRETF-QDVGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIF 185
Y F++ + V L+TG D ++ + ++ T E + S ++ ++++ +
Sbjct: 1394 YEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVV 1453
Query: 186 DEVHYINDSERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKV 238
DEVH I E G V E + + + + IV LS+++ N + A W+G T
Sbjct: 1454 DEVHLIG-GENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG-CSATST 1511
Query: 239 YVVSTLKRPVPLK 251
+ RPVPL+
Sbjct: 1512 FNFHPNVRPVPLE 1524
Score = 72 (30.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE-- 387
V++F SRK + A + M EK + F ++ + + A Q K LE
Sbjct: 721 VLVFVHSRKETGKTARAIRDM----CLEKDTLGLFLREGSASTEVLRTEA-EQCKNLELK 775
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
LL G +HH+G+ + + +VE LF
Sbjct: 776 DLLPYGFAIHHAGMTRVDRTLVEDLF 801
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 167 (63.8 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQK 132
D +Q++ + ++ + + A TS+GKT + Y + L ++++ +Y +P KAL NQ
Sbjct: 761 DTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQV 820
Query: 133 ----YRDFRETFQD----VGLVTGDFQINTTASCLVMTT-----EILRSMLYRGSDVLRD 179
+ F ++ + G+ T D++ + +C V+ T EIL +R + V R
Sbjct: 821 AATVHNRFTKSLPNGEALCGVFTRDYR-HDALNCQVLITVPACFEILLLSPHRQAWVKR- 878
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTK 234
+ YVIFDEVH + VWE +L+++ C + LSAT+ N +W+ + K
Sbjct: 879 IRYVIFDEVHCLGGEIGAEVWEHLLVMIR---CPFLALSATISNPEHLTEWLQSVK 931
Score = 79 (32.9 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L+ L + GIG HHS + K++VE+LF+KG ++
Sbjct: 1249 LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIR 1282
Score = 61 (26.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 313 NLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL-------SMDFSTATEK------S 359
++F + LRK + LP + F + + ++ AA+L +M +K +
Sbjct: 1108 SMFPLLVEKLRKMEKLPALFFLFNLEDVERRAASLRYFLLRKQAMQRPPKADKEAHDLIN 1167
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEM 411
KI + + SI + D+R+L ++++Q L H+ +L IL++ +E+
Sbjct: 1168 KIRKI-RKSIERQKTIDERSLKNPRKMDQKLI--YEAEHNNLLKILEKNLEI 1216
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 167 (63.8 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQK 132
D +Q++ + ++ + + A TS+GKT + Y + L ++++ +Y +P KAL NQ
Sbjct: 764 DTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQV 823
Query: 133 ----YRDFRETFQD----VGLVTGDFQINTTASCLVMTT-----EILRSMLYRGSDVLRD 179
+ F ++ + G+ T D++ + +C V+ T EIL +R + V R
Sbjct: 824 AATVHNRFTKSLPNGEALCGVFTRDYR-HDALNCQVLITVPACFEILLLSPHRQAWVKR- 881
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTK 234
+ YVIFDEVH + VWE +L+++ C + LSAT+ N +W+ + K
Sbjct: 882 IRYVIFDEVHCLGGEIGAEVWEHLLVMIR---CPFLALSATISNPEHLTEWLQSVK 934
Score = 79 (32.9 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L+ L + GIG HHS + K++VE+LF+KG ++
Sbjct: 1252 LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIR 1285
Score = 61 (26.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 313 NLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL-------SMDFSTATEK------S 359
++F + LRK + LP + F + + ++ AA+L +M +K +
Sbjct: 1111 SMFPLLVEKLRKMEKLPALFFLFNLEDVERRAASLRYFLLRKQAMQRPPKADKEAHDLIN 1170
Query: 360 KIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEM 411
KI + + SI + D+R+L ++++Q L H+ +L IL++ +E+
Sbjct: 1171 KIRKI-RKSIERQKTIDERSLKNPRKMDQKLI--YEAEHNNLLKILEKNLEI 1219
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 166 (63.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 46/140 (32%), Positives = 76/140 (54%)
Query: 131 QKYRDFRETFQDVGLVTGDFQINTTASCLVMTT--EILRSMLYRGSDVLRD------LEY 182
+K+R + E+ + T D+++N C ++ T IL+ ML +V + ++
Sbjct: 785 KKFR-YEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIMLLSPPNVEKANSWAHRIKR 843
Query: 183 VIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTKKTKVY-- 239
+IFDEVH I ++ G VWE++L+L P C I+ LSATV N EF W+ ++KTK +
Sbjct: 844 IIFDEVHCIGQAQEGVVWEQLLLLAP---CPIIALSATVGNPQEFVAWLSESQKTKGHDL 900
Query: 240 -VVSTLKRPVPLKHFLYVGP 258
+V R L+ ++Y P
Sbjct: 901 ELVEHKARYSDLRKYIYRPP 920
Score = 107 (42.7 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALS 129
F D +Q++ + ++ + V A TSAGKT I+ YA+ + + +Y +P KAL
Sbjct: 713 FNPDAWQRKVLDAIDAKKSLCVIAPTSAGKTFISFYAMKKVMQSSDNDVLVYVAPTKALV 772
Query: 130 NQ-------KYRD-FR-ETFQDVGLV-TGDFQINTTASCLVMTT--EILRSML 170
NQ +++ FR E + V + T D+++N C ++ T IL+ ML
Sbjct: 773 NQIAAEVQGRFKKKFRYEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIML 825
Score = 75 (31.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 365 FQDSIRNLQNED----DRALPQVKR---LEQLLKNGIGVHHSGILPILKEIVEMLFQKGL 417
F DS R Q ED R+L V + L+ G+GVHH+G+ +++VEML ++G
Sbjct: 1182 FSDS-RKCQREDLEELIRSLNWVNLDPVFIEALRRGVGVHHAGMNRKYRQVVEMLCRRGF 1240
Query: 418 V 418
+
Sbjct: 1241 L 1241
Score = 60 (26.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 16/75 (21%), Positives = 36/75 (48%)
Query: 322 LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQN--EDDRA 379
L + Q LP ++F R +C+ +++S E K + +Q +I++ + +
Sbjct: 1073 LHQRQGLPAIIFNYDRMKCESIMKSVISELKRHELEWKKTSKEWQKTIKDYEKWVKAQEK 1132
Query: 380 LPQVKRLEQLLKNGI 394
+ + K+ + KNG+
Sbjct: 1133 IKETKQGRKQDKNGL 1147
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 137 (53.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 48/177 (27%), Positives = 82/177 (46%)
Query: 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQK 132
+ +Q++ + ++++ + A TS+GKT + Y + L ++ +Y +P K+L Q
Sbjct: 745 NAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQV 804
Query: 133 YRDFRETFQDV--------GLVTGDFQINTTASCLVMTT-----EILRSMLYRGSDVLRD 179
F G T D+ N +C V+ T EIL +R V R
Sbjct: 805 AATVENRFTKTLPAGRTLCGAFTRDYCHNVL-NCQVLITVPECFEILLLAPHRQKWVER- 862
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTKK 235
+ YVIFDEVHY+ WE +L+++ C ++LSAT+ N W+ + K+
Sbjct: 863 IRYVIFDEVHYLGREVGAKFWELLLVIIR---CPFLVLSATINNPNLLTKWLQSVKQ 916
Score = 100 (40.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 346 NLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQV------KRLEQLLKNGIGVHHS 399
NL ++ S + + + RN + +R LP+V K L+ L + GIG HHS
Sbjct: 1191 NLKILEISEDCTYADVKALHTEITRNKDSTLERVLPRVRFTRHGKELKALAQRGIGYHHS 1250
Query: 400 GILPILKEIVEMLFQKGLVK 419
+ KE VE+LF KGL++
Sbjct: 1251 SMYFKEKEFVEILFVKGLIR 1270
Score = 38 (18.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 314 LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIH 362
+F + LR+ LP + F + A ++ + T T KS H
Sbjct: 1093 MFPLLVEKLRQMDKLPAIFFLFKNDDVGKRAGSVCTFLEKTET-KSHPH 1140
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 164 (62.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 50/196 (25%), Positives = 94/196 (47%)
Query: 64 PIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIY 121
P + H P D +Q++ + ++ + + A TS+GKT + Y + L + + +Y
Sbjct: 736 PRVQHFIP---DTWQRELLDAVDNNESAVIVAPTSSGKTYASYYCMEKVLKMSDEGVVVY 792
Query: 122 TSPIKALSNQK----YRDFRETFQD----VGLVTGDFQINTTASCLVMTT-EILRSMLY- 171
+P KAL NQ Y F + D G+ T D++ + S +++T + L ++
Sbjct: 793 VAPTKALVNQVVGSVYSRFTKKLPDGLVVCGVFTRDYRHDVMNSQILVTVPQCLEILMLS 852
Query: 172 -RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADW 229
R + ++Y+IFDE+H + VWE +L+ + C + LSAT+ N +W
Sbjct: 853 PRCQSWTKRIQYIIFDEIHCLGGEIGAEVWEHLLVTIR---CPFLALSATISNPDHLTEW 909
Query: 230 VGNTKKTKVYVVSTLK 245
+ + K+ +T+K
Sbjct: 910 LQSVKRYWQCADNTIK 925
Score = 68 (29.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ L + GIG HH + ++ VEMLF+ G +K
Sbjct: 1243 QTLARRGIGYHHGAMAMKERQTVEMLFRLGYIK 1275
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 157 (60.3 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 48/176 (27%), Positives = 88/176 (50%)
Query: 75 DVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQK 132
D +Q++ + ++++ + A TS+GKT + Y + L ++ +Y +P KAL NQ
Sbjct: 765 DTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQV 824
Query: 133 YRDFRETFQ------DV--GLVTGDFQINTTASCLVMTT-----EILRSMLYRGSDVLRD 179
+ F +V G+ T +++ + +C V+ T EIL +R + V +
Sbjct: 825 AATVQNRFTKNLPSGEVLCGVFTREYR-HDALNCQVLITVPACFEILLLAPHRQNWV-KK 882
Query: 180 LEYVIFDEVHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTK 234
+ YVIFDEVH + +WE +L+++ C + LSAT+ N +W+ + K
Sbjct: 883 IRYVIFDEVHCLGGEIGAEIWEHLLVMIR---CPFLALSATISNPEHLTEWLQSVK 935
Score = 76 (31.8 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ L+ L + GIG HHS + K++VE+LF+KG ++
Sbjct: 1251 EELKALAERGIGYHHSAMSFKEKQLVEILFRKGYLR 1286
Score = 43 (20.2 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 314 LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLS 349
+F + LRK + LP LF L + +NAA +S
Sbjct: 1113 MFPLLVEKLRKMEKLPA-LFFLFKLGAVENAAESVS 1147
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 132 (51.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 44/146 (30%), Positives = 76/146 (52%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKAL 128
P + VF A+ +++ VFV A T +GKT+ AE+AI L N + R +Y +P++AL
Sbjct: 1326 PIQTQVFN--AVYNSDDN--VFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPMEAL 1381
Query: 129 SNQKYRDFRETFQD-----VGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVL 177
+ Q + D+ + FQ+ V L+TG D ++ +V T + + S ++ +
Sbjct: 1382 AEQVFLDWHQKFQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNV 1441
Query: 178 RDLEYVIFDEVHYINDSERGHVWEEV 203
+++ I DEVH I + G V E +
Sbjct: 1442 QNVSLFIIDEVHLIG-GDNGPVLEVI 1466
Score = 117 (46.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 45/166 (27%), Positives = 79/166 (47%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGLV----TGDFQ-----INTTASCLVMTTEILRS 168
+ IY +P+++L + F + G++ TGD Q IN T +V T E
Sbjct: 534 KIIYIAPMRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINAT-QIIVCTPEKWDI 592
Query: 169 MLYRGSD--VLRDLEYVIFDEVHYINDSERGHVWEEVLI-------LLPKEVCIVMLSAT 219
+ +G + + + +I DE+H ++D +RG V E ++ L ++V ++ LSAT
Sbjct: 593 ITRKGGERTYTQLVRLIIIDEIHLLHD-DRGPVLESLIARTIRNVELTQEDVRLIGLSAT 651
Query: 220 VPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
+PN + A + ++ RPVPL+ YVG + EK +
Sbjct: 652 LPNYEDVATCLRVDPSKGLFYFDNSFRPVPLEQ-TYVG-ITEKKAI 695
Score = 103 (41.3 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 26/98 (26%), Positives = 50/98 (51%)
Query: 322 LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
++ S + PV++F SR++ A ++L+ + + +H +D + ++N D L
Sbjct: 1547 MKHSPSKPVLVFVPSRRQTRLTAIDILTFCAADVVPQRFLHSTEKDLVPFMENLSDVTL- 1605
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ L NG+G H G+ P + IVE LF G ++
Sbjct: 1606 -----KETLSNGVGYLHEGLSPTERRIVEHLFTSGAIQ 1638
Score = 73 (30.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 33/133 (24%), Positives = 61/133 (45%)
Query: 133 YRDFRETF-QDVGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIF 185
++ F+E + V L+TG D ++ +V T + + S ++ ++++ I
Sbjct: 1390 HQKFQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFII 1449
Query: 186 DEVHYINDSERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKV 238
DEVH I + G V E + + + + IV LS+++ N + A W+G T
Sbjct: 1450 DEVHLIG-GDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG-CSTTAT 1507
Query: 239 YVVSTLKRPVPLK 251
+ RPVPL+
Sbjct: 1508 FNFHPNVRPVPLE 1520
Score = 72 (30.4 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE-- 387
V++F SRK + A + M EK + F ++ + + A Q K LE
Sbjct: 718 VLVFVHSRKETGKTARAIRDM----CLEKDTLGLFLREGSASTEVLRTEA-EQCKNLELK 772
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
LL G +HH+G+ + + +VE LF
Sbjct: 773 DLLPYGFAIHHAGMTRVDRTLVEDLF 798
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 135 (52.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 54/187 (28%), Positives = 92/187 (49%)
Query: 90 HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDF-RETFQDVGL- 145
+V + + T +GKTV AE A+ A + ++ +Y +P+KAL ++ D+ R +GL
Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVMDWGRRLTAPMGLK 1209
Query: 146 ---VTGDFQINTT----ASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDS 194
+TGD +T A ++ T E I RS R D +R + VI DE+H +
Sbjct: 1210 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTR--DYVRKVSLVIIDEIHLLG-G 1266
Query: 195 ERGHVWEEVLILL------PK-EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRP 247
+RG + E ++ + K V ++ +S N + A+W+G K +Y RP
Sbjct: 1267 DRGPILEIIVSRMNYIASQSKGSVRLMGMSTACANASDLANWLG--VKEGLYNFRHSVRP 1324
Query: 248 VPLKHFL 254
VPL+ ++
Sbjct: 1325 VPLEIYI 1331
Score = 120 (47.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 146 VTGDFQINT---TASCLVMTTEILRSMLYRGS----DVLRDLEYVIFDEVHYINDSERGH 198
+TGD Q+ + +++TT ++ R S ++++ + +I DEVH ++D ERG
Sbjct: 383 LTGDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQKVRLLIIDEVHMLHD-ERGA 441
Query: 199 VWEEVLILLPKEV-------CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK 251
V E ++ ++V IV LSAT+PN ++ AD++ K ++ + RPVPL+
Sbjct: 442 VIESLVARTQRQVESTQSLIRIVGLSATLPNYVDVADFLKVNKMAGLFFFDSSFRPVPLE 501
Query: 252 -HFLYV----GPVLEKNQLFLIR-EAEGEFLTRGYLAAKEVKCRK 290
HF+ V G ++ + + E + L RG+ V RK
Sbjct: 502 QHFIGVKGKPGSKQSRDNIDTVTFEKVRDMLERGHQVMVFVHSRK 546
Score = 94 (38.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 305 PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
P + + F++ N+ S PV++F SR++ A +L++ + R
Sbjct: 1342 PLMQSMNRPTFLAIKNH---SPEKPVIVFVASRRQTRLTAKDLINF-CGMEDNPRRFVRM 1397
Query: 365 FQDSIR-NLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+D ++ NL+ D AL + L GIG+HH+G++ +++ E LF ++
Sbjct: 1398 SEDDLQLNLERVKDDAL------REALSFGIGLHHAGLVESDRQLAEELFANNKIQ 1447
Score = 56 (24.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSM---DFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRL 386
V++F SRK A L M D A H + +++R++++ RA + L
Sbjct: 538 VMVFVHSRKDTVLTARMLKQMAVQDGCEALFSCHEHENYSNALRDMKHA--RA----REL 591
Query: 387 EQLLKNGIGVHHSGI 401
L +G G HH+G+
Sbjct: 592 RDLFASGFGTHHAGM 606
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 251 KHFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKE 285
KHFL+ G +E ++ G ++ G +A K+
Sbjct: 1520 KHFLHTGFPVESTLHKVLDNHLGAEVSAGTIATKQ 1554
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 140 (54.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 74/337 (21%), Positives = 149/337 (44%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKAL 128
P + +F A +E+ + + A T +GKTVI E I L + +++Y P+KA+
Sbjct: 1373 PIQTQMFH--ATFHTDEN--ILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAI 1428
Query: 129 SNQKYRDFRETFQ-----DVGLVTGDFQIN----TTASCLVMTTEILRSML--YRGSDVL 177
N++Y+ ++ F+ +V +TGD N ++ ++ T E L + ++ +
Sbjct: 1429 VNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLDVITRNWKNKKFV 1488
Query: 178 RDLEYVIFDEVHYINDSERGHVWEEVLIL--------LPKEVCIVMLSATVPNTLEFADW 229
+++ +IFDE+H + RG V E +L+ L K++ ++ L+ + + + W
Sbjct: 1489 KNINLIIFDEIHLLGQENRGGVIE-ILVNRFKNMQNELNKKIRLIGLTTVITSVDDLILW 1547
Query: 230 VGNTKKTKVYVVSTLKRPVPLK-HFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-- 286
+ + K+ ++ + R VP K H L N++ ++ + + + + Y K V
Sbjct: 1548 L-DVKENYLFNFPSSCRIVPCKTHILGFTQKAYCNRMSVMNKNVFDAINQ-YAQTKNVLI 1605
Query: 287 --KCRKQLEKXXXXXXKLNGPFTRGAEKNL-FISFLNYLRKSQNLPVVLFTLSRKRCDQN 343
R+Q LN + NL F+ N L ++ +L T +K+ +N
Sbjct: 1606 FVSSRRQTRLTAYDIISLNL-----SSHNLNFLHVENLLNDKNHIDFLLNT--QKKNKKN 1658
Query: 344 AANLLSMDFSTATEKSKIHRF-FQDSIRNLQNEDDRA 379
N M+ I+ F + + N+ +D+ A
Sbjct: 1659 KINNKDMNEGDNNIAENINTFEYTEYKMNINRKDNIA 1695
Score = 90 (36.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 351 DFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVE 410
D++ SK+ + ++ N+ ++ L + + L+++LK GIG+HH+G+ K IVE
Sbjct: 1772 DYNLLFNNSKLSEEERKNVANILFQNYLNLIENEHLKEILKYGIGIHHAGLNENDKTIVE 1831
Query: 411 MLFQKGLVK 419
LF +++
Sbjct: 1832 YLFLNKIIQ 1840
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 140 (54.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 74/337 (21%), Positives = 149/337 (44%)
Query: 71 PFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKAL 128
P + +F A +E+ + + A T +GKTVI E I L + +++Y P+KA+
Sbjct: 1373 PIQTQMFH--ATFHTDEN--ILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAI 1428
Query: 129 SNQKYRDFRETFQ-----DVGLVTGDFQIN----TTASCLVMTTEILRSML--YRGSDVL 177
N++Y+ ++ F+ +V +TGD N ++ ++ T E L + ++ +
Sbjct: 1429 VNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLDVITRNWKNKKFV 1488
Query: 178 RDLEYVIFDEVHYINDSERGHVWEEVLIL--------LPKEVCIVMLSATVPNTLEFADW 229
+++ +IFDE+H + RG V E +L+ L K++ ++ L+ + + + W
Sbjct: 1489 KNINLIIFDEIHLLGQENRGGVIE-ILVNRFKNMQNELNKKIRLIGLTTVITSVDDLILW 1547
Query: 230 VGNTKKTKVYVVSTLKRPVPLK-HFLYVGPVLEKNQLFLIREAEGEFLTRGYLAAKEV-- 286
+ + K+ ++ + R VP K H L N++ ++ + + + + Y K V
Sbjct: 1548 L-DVKENYLFNFPSSCRIVPCKTHILGFTQKAYCNRMSVMNKNVFDAINQ-YAQTKNVLI 1605
Query: 287 --KCRKQLEKXXXXXXKLNGPFTRGAEKNL-FISFLNYLRKSQNLPVVLFTLSRKRCDQN 343
R+Q LN + NL F+ N L ++ +L T +K+ +N
Sbjct: 1606 FVSSRRQTRLTAYDIISLNL-----SSHNLNFLHVENLLNDKNHIDFLLNT--QKKNKKN 1658
Query: 344 AANLLSMDFSTATEKSKIHRF-FQDSIRNLQNEDDRA 379
N M+ I+ F + + N+ +D+ A
Sbjct: 1659 KINNKDMNEGDNNIAENINTFEYTEYKMNINRKDNIA 1695
Score = 90 (36.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 351 DFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVE 410
D++ SK+ + ++ N+ ++ L + + L+++LK GIG+HH+G+ K IVE
Sbjct: 1772 DYNLLFNNSKLSEEERKNVANILFQNYLNLIENEHLKEILKYGIGIHHAGLNENDKTIVE 1831
Query: 411 MLFQKGLVK 419
LF +++
Sbjct: 1832 YLFLNKIIQ 1840
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 144 (55.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 54/198 (27%), Positives = 97/198 (48%)
Query: 86 EEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKT---------RTIYTSPIKALSNQKYRD 135
E N++ + A T AGKT +A I + +N + + +Y +P+KAL ++ R+
Sbjct: 387 ETDNNLLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQEQMRE 446
Query: 136 FRETFQDV-GLV----TGDFQIN----TTASCLVMTTEILRSMLYRGSDVLRDLEYVIFD 186
F+ V G+V TGD ++ +V T E + + ++ ++ +I D
Sbjct: 447 FQRRLTSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITRKDPSYVKLVKLMIID 506
Query: 187 EVHYINDSERGHVWEEVLI-LLPK------EVCIVMLSATVPNTLEFADWVGNTKKTKVY 239
E+H ++D ERG V E ++ + K ++ IV LSAT+PN + A ++ K ++
Sbjct: 507 EIHLLHD-ERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFI-RAKPEGLF 564
Query: 240 VVSTLKRPVPLKHFLYVG 257
RP PL+ +Y+G
Sbjct: 565 YFDASYRPCPLEQ-VYIG 581
Score = 124 (48.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 42/162 (25%), Positives = 87/162 (53%)
Query: 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKT-RTIYTSPIKALSNQ---KYRDFRETFQ-DV 143
N+VF+ + GKTV+AE AI N+K R +Y +P + L ++ K+ F +++ ++
Sbjct: 1223 NNVFIGSSKGDGKTVLAELAILNHWNNKKGRIVYINPCQELVDKLFKKWSTFFSSYEKEI 1282
Query: 144 GLVTGDFQINTTA---SCLVMTT-EILR--SMLYRGSDVLRDLEYVIFDEVHYI-NDSER 196
+++G+ + ++ + S L++ T E S ++ R ++ I+D++H + +D
Sbjct: 1283 NVLSGNLREDSASVNQSHLILATPEQFNCLSKRWKTRKAFRSIDLFIWDDLHLVGSDVHY 1342
Query: 197 GHVWEEVLILLPK----EVCIVMLSATVPNTLEFADWVGNTK 234
+ V +L + ++ IV LS+ V N+ + A+W+G K
Sbjct: 1343 EMLVTRVRMLTSQWDDYKLRIVALSSPVLNSRDIAEWIGVAK 1384
Score = 83 (34.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 352 FSTAT---EKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEI 408
F+TA EK I Q+ ++ + ++ ++ K L++++ G G+HH+G+ + +
Sbjct: 623 FTTAKYLMEKLDIDIVEQEGVKEILKQEGESMSNPK-LKEVIPRGFGIHHAGLTKKDRGV 681
Query: 409 VEMLFQKGLVK 419
VE LF +G ++
Sbjct: 682 VEDLFAQGYLR 692
Score = 57 (25.1 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 386 LEQLLKNGIGVHHSGILPILKEIVEMLFQ 414
L+ LL GI V +SG+ + + IVE LF+
Sbjct: 1475 LKNLLPKGIAVFYSGMARVDRLIVERLFE 1503
Score = 49 (22.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 359 SKIHRFFQDSIRN-----LQNEDDRALPQVKRLEQLLKNGI-----GVHHSGILPILKEI 408
+ +H FF D++ N QN D L +LLKN V +SGI L E+
Sbjct: 1590 NSLHEFFMDAVANGIIKQRQNCID-VLTFTFFYRRLLKNPSFYDLKEVSNSGISTYLSEL 1648
Query: 409 VEMLF 413
+E +F
Sbjct: 1649 IESVF 1653
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 176 (67.0 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 54/170 (31%), Positives = 92/170 (54%)
Query: 81 AIIKLEEHNHVFVTAHTSAGKTVIAEYAIA----LSQNHKTRTIYTSPIKALSNQKYRDF 136
AI K +++ V + A T +GKTV+ E AI + ++ K + +Y +P K+L ++++RD+
Sbjct: 260 AIYKSDDN--VVIAAPTGSGKTVVMELAICRLLNIRKDKKFKVVYQAPTKSLCSERFRDW 317
Query: 137 RETFQDVGL----VTGDF---QINTTAS--CLVMTTEILRSMLYRGSDVLRDLEYV---I 184
+ F +GL +TGD Q+ + +V T E SM + D +R ++ V +
Sbjct: 318 NQKFHALGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKWDSMTRKWKDHIRLMQPVKLFL 377
Query: 185 FDEVHYINDSERGHVWEEVLILLPK---EVCIVMLSATVPNTLEFADWVG 231
DEVH + ++ RG E V+ + V V LSAT+PN+ + A W+G
Sbjct: 378 IDEVHTLKEA-RGATLEAVVSRMKSIGSNVRFVALSATIPNSEDIATWLG 426
Score = 45 (20.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 353 STATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLKNGIGV--HHSGILPILKEIVE 410
STA E +++ +R + ++ LP VK + + GV HH+G+ + +VE
Sbjct: 496 STAKELARLWSMSSRLVR-MWKGPNKPLP-VKHADLKVTTAAGVAFHHAGLETEDRHLVE 553
Query: 411 MLFQKGLV 418
+ +G +
Sbjct: 554 NGYLQGKI 561
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 152 (58.6 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 45/132 (34%), Positives = 76/132 (57%)
Query: 89 NHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQ--DVG 144
N+V + A T +GKT++AE AI AL+QN K + +Y +P+KAL ++ D+ + FQ +G
Sbjct: 1353 NNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLG 1412
Query: 145 L----VTGDFQINTTA---SCLVMTTE-----ILRSMLYRGSDVLRDLEYVIFDEVHYIN 192
L +TGD + A S L++TT I RS R + ++ + ++ DE+H +
Sbjct: 1413 LKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTR--EYVQHVSLIVIDEIHLLG 1470
Query: 193 DSERGHVWEEVL 204
+ +RG V E ++
Sbjct: 1471 E-DRGPVIEVIV 1481
Score = 72 (30.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRN-LQNEDDRALPQVKRLE 387
P ++F SR++ A +L++ + K +H +D I LQN ++ L+
Sbjct: 1568 PTIVFVSSRRQTRLTALDLITFVAGESNPKQFLH-IPEDEIELILQNIREQ------NLK 1620
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 1621 FCLAFGIGLHHAGLQEQDRKCVEELF 1646
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 102 (41.0 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 31/112 (27%), Positives = 56/112 (50%)
Query: 309 GAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDS 368
G + + + N + + N V++F SRK C+ A ++ + + + F D
Sbjct: 752 GKDPDHIVELCNEVVQEGN-SVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMD- 809
Query: 369 IRNLQNEDDRALPQVKR-LEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
IR+ + R+ V LE+ L +G+ HH+G+ +EIVE ++KGLV+
Sbjct: 810 IRSAIDALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVR 861
Score = 90 (36.7 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 36/149 (24%), Positives = 68/149 (45%)
Query: 70 WPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKT--RTIYTSPIKA 127
+P++++ Q + L++ N V+ A TSAGK+ +AE + L + +T + P +
Sbjct: 516 YPWQVECLQVDGV--LQKRNLVYC-ASTSAGKSFVAE-VLMLRRVIRTGKMALLVLPYVS 571
Query: 128 LSNQKYRDFRETFQDVGLVTGDFQINTTASCL-------VMTTEILRSMLYRGSDV--LR 178
+ +K + +G + N L V T E S++ R + L
Sbjct: 572 ICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLS 631
Query: 179 DLEYVIFDEVHYINDSERGHVWEEVLILL 207
+L ++ DE+H + D RG++ E +L L
Sbjct: 632 ELGIIVIDELHMVGDQHRGYLLELMLTKL 660
Score = 80 (33.2 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 213 IVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIR 269
IV +SAT+PN ADW+ + +Y T RPVPL+ ++ VG + ++ ++R
Sbjct: 692 IVGMSATMPNVGAVADWL----QAALY--QTEFRPVPLEEYIKVGSTIYNKKMEVVR 742
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 148 (57.2 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 57/192 (29%), Positives = 93/192 (48%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYA 108
LD K V + AK + +P+ + Q +A L +V V A T +GKTV+ E A
Sbjct: 260 LDSLKAVTEIPAKFRSVFKEFPY-FNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELA 318
Query: 109 IA--LSQN----HKTRTIYTSPIKALSNQKYRDFRETFQDVGL----VTGD------FQI 152
I L + + +Y +PIKAL +Q++ D++E F +GL +TGD F+I
Sbjct: 319 ITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEI 378
Query: 153 NTTASCLVMTTEILRSML--YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKE 210
A ++ T E SM +R + +++ + + DEVH + D RG E +++ +
Sbjct: 379 QH-AHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLE---VVVSRM 434
Query: 211 VCIVMLSATVPN 222
+ LS V N
Sbjct: 435 KTVQFLSHAVEN 446
Score = 69 (29.3 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMD---FSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
S P ++F +RK Q AA++L D T +K ++H+ SIR+
Sbjct: 527 SDQKPTLVFCATRKGVQQ-AASILVKDAKFIMTVEQKQRLHKCAY-SIRD---------- 574
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L LL +G+ HH+G+ +++VE F G
Sbjct: 575 --SKLRDLLIHGVAYHHAGMELSDRKVVEGAFTVG 607
Score = 43 (20.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 222 NTLEFADWVGNTKKTKVYVVSTL 244
N +E A + +T+KTK+ +TL
Sbjct: 1280 NLIEIASFSADTEKTKIGFGNTL 1302
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 57/194 (29%), Positives = 94/194 (48%)
Query: 25 EVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAII 83
E +P+ LP K+ TE ++ + L A + +PF + Q Q
Sbjct: 113 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 171
Query: 84 KL-EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRTIYTSPIKALSNQKYRDFRETF 140
+ ++VFV A T +GKT+ AE+AI L QN + R +Y +P++AL+ Q Y D+ E F
Sbjct: 172 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKF 231
Query: 141 QD-----VGLVTG----DFQINTTASCLVMTTEI--LRSMLYRGSDVLRDLEYVIFDEVH 189
QD V L+TG D ++ + ++ T E + S ++ ++++ + DEVH
Sbjct: 232 QDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 291
Query: 190 YINDSERGHVWEEV 203
I E G V E +
Sbjct: 292 LIG-GENGPVLEVI 304
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 120 (47.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 39/130 (30%), Positives = 69/130 (53%)
Query: 88 HNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRE-----TF 140
++ VFV + T +GKTV+AE AI A ++ ++ +Y +P+KAL ++ D+RE T
Sbjct: 1129 NSSVFVGSPTGSGKTVVAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWRERICKNTS 1188
Query: 141 QDVGLVTGD----FQINTTASCLVMTTEILR--SMLYRGSDVLRDLEYVIFDEVHYINDS 194
+ +TGD Q A ++ T E S ++ ++ + VI DE+H + S
Sbjct: 1189 HRLVELTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDEIHLLA-S 1247
Query: 195 ERGHVWEEVL 204
+RG + E ++
Sbjct: 1248 DRGPILEMIV 1257
Score = 105 (42.0 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 32/120 (26%), Positives = 65/120 (54%)
Query: 146 VTGDFQINTTA---SCLVMTT----EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
+TGD Q+ + +++TT +++ S+++ ++ +I DEVH +++ +RG
Sbjct: 351 LTGDMQLTRQEIINTQIIVTTPEKWDVVTRKSTGDSELVAKVKLLIIDEVHLLHE-DRGS 409
Query: 199 VWEEVLILLPKEV-------CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK 251
V E ++ ++V +V LSAT+PN ++ AD++G + ++ RPVPL+
Sbjct: 410 VIETLVARTLRQVESTQSMIRVVGLSATLPNYMDVADFLGVNRSVGMFYFDQSFRPVPLQ 469
Score = 99 (39.9 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQ-DSIRNLQNEDDRALPQV 383
+Q L V++F SRK A + M + +S+I + DS + E +
Sbjct: 501 NQGLQVMVFVHSRKDTVNTARTFIRM--AVEYGESEIFNCSEADSYEKYKREASNK-NRS 557
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
K L++L +G GVHH+G+L + + E +F+ G +K
Sbjct: 558 KELKELFVHGFGVHHAGMLRSDRNLTEKMFESGAIK 593
Score = 98 (39.6 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 28/103 (27%), Positives = 54/103 (52%)
Query: 317 SFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNED 376
+F+ + S N PV++F SR++ A +L+ + +S RF + S LQ+
Sbjct: 1332 AFMAIKQHSPNKPVLIFVASRRQTRLTALDLIHL----CGMESNPRRFLKISDDELQDIL 1387
Query: 377 DRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ RL L+ G+G+HH+G++ ++I LF++G ++
Sbjct: 1388 ENVKDDTLRLS--LQFGMGLHHAGLVESDRQISHKLFEQGKIQ 1428
Score = 78 (32.5 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 177 LRDLEYVIFDEVHYINDSERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADW 229
++ + VI DE+H + S+RG + E ++ + K + ++ +S V N + A W
Sbjct: 1231 VQQVSLVIMDEIHLLA-SDRGPILEMIVSRMNYISSQTKKPIRLLGMSTAVSNAFDMAGW 1289
Query: 230 VGNTKKTKVYVVSTLKRPVPLKHFL 254
+G K ++ RPVPL+ ++
Sbjct: 1290 LG--VKNGLFNFPQSVRPVPLQMYI 1312
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 25 EVDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDA-KVPIMAHTWPFELDVFQK 79
+ D+ +L I +T+ + VT+T E DVS + D+D K+ +A ++ +K
Sbjct: 283 KTDVALLTILHTINQFVTETV-TEDGDVSVDI-DYDEFKIVYVAPLKALAAEIVEK 336
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 88 HNHVFVTAHTSAGKTVIAEYAIALSQNH-KTRTI 120
+ ++ V A T AGKT +A I + N T T+
Sbjct: 270 NENMLVCAPTGAGKTDVALLTILHTINQFVTETV 303
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 134 (52.2 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 57/200 (28%), Positives = 97/200 (48%)
Query: 86 EEHNHVFVTAHTSAGKTVIAEYAIA--LSQN---------HKTRTIYTSPIKALSNQKYR 134
+ + ++ ++A T AGKT IA I + N + IY +P+KAL+++
Sbjct: 496 KSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVE 555
Query: 135 DFRETFQDVGLV----TGDFQINTT----ASCLVMTTEILRSMLYRGSDV-LRDL-EYVI 184
F + + +G+V TGD Q+ +V T E + + SDV L L +I
Sbjct: 556 KFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLII 615
Query: 185 FDEVHYINDSERGHVWEEVLILLPKEV-------CIVMLSATVPNTLEFADWVGNTKKTK 237
DE+H +++ ERG V E ++ ++V IV LSAT+PN + A ++ +
Sbjct: 616 IDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI-RAPASG 673
Query: 238 VYVVSTLKRPVPL-KHFLYV 256
+ + RPVPL ++F+ V
Sbjct: 674 THFFDSSYRPVPLTQNFIGV 693
Score = 122 (48.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 49/186 (26%), Positives = 89/186 (47%)
Query: 37 LPKH--VTQTEWAEMLDVSKPVL---DFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHV 91
LP+ V TE ++ + K L DF++ +H P + VF +N+V
Sbjct: 1291 LPQQDRVVNTELLDLQPLPKEALKNKDFESLFKF-SHFNPIQTQVFHTLYYT----NNNV 1345
Query: 92 FVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD-VG--LV 146
+ + T +GKT+ AE A+ + +Y +P+KAL ++ D++ FQ+ +G LV
Sbjct: 1346 LLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLV 1405
Query: 147 --TGDFQINTTA--SCLVMTTEILR----SMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
TGD+ N A + ++TT + S ++ + + +I DE+H I + RG
Sbjct: 1406 ELTGDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGEL-RGP 1464
Query: 199 VWEEVL 204
+ E ++
Sbjct: 1465 ILEVIV 1470
Score = 84 (34.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQL 389
V++F SRK ++A L M A EK H F + + + + + K + L
Sbjct: 724 VMIFVHSRKDTVKSAEILSDM----AKEK---HFRFSNEEPSFGAKKEFEKVKSKEIRSL 776
Query: 390 LKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++GI VHH+G+L + +VE F G +K
Sbjct: 777 FQHGISVHHAGLLRSDRNVVEKYFANGTIK 806
Score = 72 (30.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 317 SFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNED 376
SF S PV++F SR++ A +L+S + + ++ Q + E
Sbjct: 1545 SFAAIATYSPKKPVLIFVSSRRQTRLTALDLISY---LVVDNDPL-QWIQ---KGFDIEP 1597
Query: 377 DRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
A + + L L GIG+HH+G+ + IVE LF + ++
Sbjct: 1598 TLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQ 1640
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 150 (57.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 64/209 (30%), Positives = 100/209 (47%)
Query: 19 SGSNRREVDI---PILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELD 75
S S RE DI P +++ P H Q LD K V + AK + +P+ +
Sbjct: 229 SASEIRE-DIFKGPTFSVASQ-P-HEVQGVTENDLDSLKAVTEIPAKFRSIFKEFPY-FN 284
Query: 76 VFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIA--LSQN----HKTRTIYTSPIKA 127
Q +A L + N V + A T +GKTV+ E AI L + + +Y +PIKA
Sbjct: 285 YIQSKAFDDLLYTDRNFV-ICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKA 343
Query: 128 LSNQKYRDFRETFQDVGL----VTGD------FQINTTASCLVMTTEILRSML--YRGSD 175
L +Q++ D++E F +GL +TGD F+I A ++ T E SM +R +
Sbjct: 344 LCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQH-AHIIMTTPEKWDSMTRKWRDNS 402
Query: 176 VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
+++ + + DEVH + D RG E V+
Sbjct: 403 LVQLVRLFLIDEVHVVKDENRGPTLEVVV 431
Score = 63 (27.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMD--FSTATEKSKIHRFFQDSIRNLQNEDDRALPQ 382
S P ++F +RK Q AA++L D F A E+ + + + SIR+
Sbjct: 526 SDQKPTLVFCATRKGVQQ-AASVLVKDAKFIMAVEQKQRLQKYAYSIRD----------- 573
Query: 383 VKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L +L +G+ HH+G+ +++VE F G
Sbjct: 574 -SKLRDILIHGVAYHHAGMELSDRKVVEGAFTVG 606
Score = 41 (19.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 341 DQNAANLLSM-DFSTATEKSKIHRF 364
D + NLL + FS +TEK+K F
Sbjct: 1273 DFDDENLLEVTSFSASTEKTKTSGF 1297
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 150 (57.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 64/209 (30%), Positives = 100/209 (47%)
Query: 19 SGSNRREVDI---PILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELD 75
S S RE DI P +++ P H Q LD K V + AK + +P+ +
Sbjct: 229 SASEIRE-DIFKGPTFSVASQ-P-HEVQGVTENDLDSLKAVTEIPAKFRSIFKEFPY-FN 284
Query: 76 VFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIA--LSQN----HKTRTIYTSPIKA 127
Q +A L + N V + A T +GKTV+ E AI L + + +Y +PIKA
Sbjct: 285 YIQSKAFDDLLYTDRNFV-ICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKA 343
Query: 128 LSNQKYRDFRETFQDVGL----VTGD------FQINTTASCLVMTTEILRSML--YRGSD 175
L +Q++ D++E F +GL +TGD F+I A ++ T E SM +R +
Sbjct: 344 LCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQH-AHIIMTTPEKWDSMTRKWRDNS 402
Query: 176 VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
+++ + + DEVH + D RG E V+
Sbjct: 403 LVQLVRLFLIDEVHVVKDENRGPTLEVVV 431
Score = 63 (27.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMD--FSTATEKSKIHRFFQDSIRNLQNEDDRALPQ 382
S P ++F +RK Q AA++L D F A E+ + + + SIR+
Sbjct: 526 SDQKPTLVFCATRKGVQQ-AASVLVKDAKFIMAVEQKQRLQKYAYSIRD----------- 573
Query: 383 VKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L +L +G+ HH+G+ +++VE F G
Sbjct: 574 -SKLRDILIHGVAYHHAGMELSDRKVVEGAFTVG 606
Score = 41 (19.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 341 DQNAANLLSM-DFSTATEKSKIHRF 364
D + NLL + FS +TEK+K F
Sbjct: 1317 DFDDENLLEVTSFSASTEKTKTSGF 1341
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 159 (61.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 65/218 (29%), Positives = 105/218 (48%)
Query: 26 VDIPILKISNTLPKHVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL 85
+ P+ +++ P H Q + LD K V + AK + +P+ + Q +A L
Sbjct: 238 IKAPLFPVASQ-P-HTVQGVTEKSLDSLKAVTEIPAKFRSIFKEFPY-FNYIQSKAFDDL 294
Query: 86 --EEHNHVFVTAHTSAGKTVIAEYAIA--LSQN----HKTRTIYTSPIKALSNQKYRDFR 137
+ N V + A T +GKTV+ E AI L + + +Y +PIKAL +Q++ D++
Sbjct: 295 LYTDRNFV-ICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWK 353
Query: 138 ETFQDVGL----VTGD------FQINTTASCLVMTTEILRSML--YRGSDVLRDLEYVIF 185
+ F +GL +TGD F+I A ++ T E SM +R + ++ + +
Sbjct: 354 KKFGPIGLNCKELTGDTVMDDLFEIQH-AHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLI 412
Query: 186 DEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223
DEVH + D RG E V++ K V I LS V NT
Sbjct: 413 DEVHVVKDENRGPTLE-VVVSRMKTVQI--LSPAVENT 447
Score = 52 (23.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMD---FSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
S P ++F +RK Q AA++L D T +K ++ + SI+ D L
Sbjct: 527 SDQKPTLVFCATRKGVQQ-AASVLVKDAKFIMTVEQKQRLQKCAY-SIK------DSKL- 577
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
R++ L+ +G+ HH+G+ +++VE F G
Sbjct: 578 ---RVDILI-HGVAYHHAGMELSDRKVVEGAFTVG 608
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 145 (56.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 55/190 (28%), Positives = 94/190 (49%)
Query: 54 KPVLDFDAKVPIMAHTWPFELDVFQKQAIIKL--EEHNHVFVTAHTSAGKTVIAEYAIA- 110
K V + AK + +P+ + Q +A L + N V + A T +GKTV+ E AI
Sbjct: 262 KAVTEIPAKFRSIFKEFPY-FNYIQSKAFDDLLYTDRNFV-ICAPTGSGKTVVFELAITR 319
Query: 111 -LSQNH----KTRTIYTSPIKALSNQKYRDFRETFQDVGL----VTGD------FQINTT 155
L + + +Y +PIKAL +Q++ D++E F +GL +TGD F+I
Sbjct: 320 LLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQH- 378
Query: 156 ASCLVMTTEILRSML--YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCI 213
A ++ T E SM +R + +++ + + DEVH + D RG E +++ + +
Sbjct: 379 AHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLE---VVVSRMKTV 435
Query: 214 VMLSATVPNT 223
+S T+ NT
Sbjct: 436 QSVSQTLKNT 445
Score = 66 (28.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMD---FSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
S P ++F +RK Q AA++L D T +K ++ ++ S+R+
Sbjct: 525 SDQKPTLVFCATRKGVQQ-AASVLVKDAKFIMTVEQKQRLQKYAY-SVRD---------- 572
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L +LK+G HH+G+ +++VE F G
Sbjct: 573 --SKLRDILKDGAAYHHAGMELSDRKVVEGAFTVG 605
Score = 46 (21.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 341 DQNAANLLSMDFSTATEKSKIHRF 364
D + NL FST TEK+KI F
Sbjct: 1273 DFDDENLEVTSFSTDTEKTKISGF 1296
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 116 (45.9 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 57/199 (28%), Positives = 91/199 (45%)
Query: 84 KLEEHNHVFVTAHTSAGKTVIAEYAIALSQN--HKTRTIYTSPIKALSNQKYR---DFRE 138
+L + + ++ T AGKT+IAE + L + K I P A+ +K F +
Sbjct: 180 RLLDGENCILSLPTGAGKTLIAE-VLMLREAIVRKRNAILVLPYVAIVQEKISALAPFED 238
Query: 139 TF----QDVGLVTGDF---QINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDE 187
F ++ G F + S V T E ++ S++ +G L + V+ DE
Sbjct: 239 AFGINIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQ--LDRVGMVVVDE 296
Query: 188 VHYINDSERGHVWEEVLI-LLPKEVC-IVMLSATVPNT--LEFADWVGNTKKTKVYVVST 243
+H I D RG + E++L L K IV +SAT+PN L+FA + +V ST
Sbjct: 297 LHMIGDGGRGAILEQLLAKFLYKGTGQIVGMSATLPNIDDLKFA--------LRAFVYST 348
Query: 244 LKRPVPLKHFLYVGPVLEK 262
RPV L F+ +G + +
Sbjct: 349 NFRPVELTEFVKIGQTMHQ 367
Score = 92 (37.4 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 331 VLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRN--LQNEDDRALPQVKRLEQ 388
V+F ++K C+ N A L++ ++K R D+ L + DD + V L+Q
Sbjct: 407 VIFCPNKKNCE-NVAVLIAKTLPAHIRQAK--RAESDAFLQSYLSDNDDERMDAV--LKQ 461
Query: 389 LLKNGIGVHHSGILPILKEIVEMLFQKGLV 418
+ +G+ HHSG+ ++ VE F +GL+
Sbjct: 462 CILSGVAYHHSGLTQDERKCVEAAFMEGLI 491
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 154 (59.3 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 51/153 (33%), Positives = 76/153 (49%)
Query: 70 WPFELDVFQKQAIIKLEEHNHVFVT-AHTSAGKTVIAEYAI------ALSQNHKTRTIYT 122
+P+ + Q QA+ + N FV A T +GKTV+ E AI A H R +Y
Sbjct: 9 FPY-FNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHNVRAVYM 67
Query: 123 SPIKALSNQKYRDFRETFQDVGL----VTGDFQINT-----TASCLVMTTEILRSMLYRG 173
+PIKAL +Q+Y ++++ F +GL +TGD +I+ A + T E SM R
Sbjct: 68 APIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWDSMTRRW 127
Query: 174 SD--VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
D +L + + DEVH + D RG E V+
Sbjct: 128 KDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVV 160
Score = 51 (23.0 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 385 RLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L L GIG HH+G+ ++I E F G
Sbjct: 304 KLRDLFVYGIGYHHAGMDVSDRKITENAFTVG 335
Score = 40 (19.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNG 393
+ D+++ ++NE P VKRL+ ++ NG
Sbjct: 911 YLDNLK-MRNEKLCETP-VKRLKMMMNNG 937
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 138 (53.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 48/154 (31%), Positives = 79/154 (51%)
Query: 87 EHNHVFVTAHTSAGKTVIAEYAIA--LSQNH----KTRTIYTSPIKALSNQKYRDFRETF 140
+ N V + A T +GKTV+ E AI L + + +Y +PIKAL +Q++ D++E F
Sbjct: 27 DRNFV-ICAPTGSGKTVVFELAITRLLMEAPLPWLNMKVVYMAPIKALCSQRFDDWKEKF 85
Query: 141 QDVGL----VTGD------FQINTTASCLVMTTEILRSML--YRGSDVLRDLEYVIFDEV 188
+GL +TGD F+I A+ ++ T E SM +R + ++ + + DEV
Sbjct: 86 GPIGLTCKELTGDTVMDDLFEIQH-ANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLIDEV 144
Query: 189 HYINDSERGHVWEEVLILLPKEVCIVMLSATVPN 222
H I D RG E +++ + + LS T+ N
Sbjct: 145 HVIKDENRGPTLE---VVVSRMKTVQSLSKTLEN 175
Score = 67 (28.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 26/93 (27%), Positives = 45/93 (48%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFS-TATEKSKIHRFFQDSIRNLQNEDDRALPQV 383
S P ++F +RK Q AA++L D T + K+ Q S ++++
Sbjct: 255 SDQKPTLVFCATRKGVQQ-AASVLVKDAKFIITVEQKLR--LQKSAYSIRDS-------- 303
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L+ L G+G HH+G+ +++VE LF G
Sbjct: 304 -KLKDTLVYGVGYHHAGMELSDRKLVEELFTSG 335
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 126 (49.4 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 50/182 (27%), Positives = 90/182 (49%)
Query: 42 TQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQ--KQAIIKLEEHN--HVFVTAHT 97
T++ + ++L++ +P+ K PI+ H + F + I H +V + + T
Sbjct: 1120 TESVYTDLLNL-QPLPIGALKNPILEHVYAQRFQYFNPMQTQIFHTLYHTPANVLLGSPT 1178
Query: 98 SAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETF-QDVGL----VTGDF 150
+GKTV AE A+ A + ++ +Y +P+KAL ++ +D+ Q +GL +TGD
Sbjct: 1179 GSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVKDWGARLAQPMGLKLVELTGDN 1238
Query: 151 QINTT----ASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEE 202
+T A ++ T E I RS RG +R + VI DE+H + +RG + E
Sbjct: 1239 TPDTRTIKDADVIITTPEKWDGISRSWQTRG--YVRQVSLVIIDEIHLLA-GDRGPILEI 1295
Query: 203 VL 204
++
Sbjct: 1296 IV 1297
Score = 114 (45.2 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 38/125 (30%), Positives = 65/125 (52%)
Query: 147 TGDFQINTT----ASCLVMTTEILRSMLYRGS---DVLRDLEYVIFDEVHYINDSERGHV 199
TGD + T +V T E + +G+ ++++ + +I DEVH ++D ERG V
Sbjct: 390 TGDMHLTKTEIVQTQIIVTTPEKWDVVTRKGTGDTELVQKVRLLIIDEVHMLHD-ERGAV 448
Query: 200 WEEVLILLPKEV-------CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK- 251
E ++ ++V IV LSAT+PN ++ AD++ + ++ RPVPL+
Sbjct: 449 LESLVARTERQVESTQSLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPLEQ 508
Query: 252 HFLYV 256
HF+ V
Sbjct: 509 HFIGV 513
Score = 86 (35.3 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 305 PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
P + + F++ N+ S PV++F SR++ A +L++M E + RF
Sbjct: 1363 PLMQSMNRPTFLAVKNH---SPTKPVIVFVPSRRQTRLTAKDLINM---CGMEDNP-RRF 1415
Query: 365 FQDSIRNLQNEDDRA-LPQVK--RLEQLLKNGIGVHHSGILPILKEIVEMLF 413
N+ +D + L +VK L++ + GIG+HH+G++ +++ E LF
Sbjct: 1416 L-----NMDEDDLQLNLTRVKDDALKEAISFGIGLHHAGLVESDRQLAEELF 1462
Score = 74 (31.1 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ + L L+ G+G+HH+G+ + ++E LF +G++K
Sbjct: 593 KARELRDLVPKGMGIHHAGMTRSDRNLMERLFAEGVLK 630
Score = 41 (19.5 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 83 IKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETF 140
I + + ++ V A T AGKT A I A+ Q Y +P L N DF
Sbjct: 302 IAYKTNENMLVCAPTGAGKTDAAMLTILHAIGQ-------YVTP-NPLQNTTATDFAVHT 353
Query: 141 QDVGLV 146
+D +V
Sbjct: 354 EDFKIV 359
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 127 (49.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 63/211 (29%), Positives = 103/211 (48%)
Query: 86 EEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRT----------IYTSPIKALSNQKY 133
E +++ + A T +GKT IA + ALS ++ +T +Y +P+KAL ++
Sbjct: 512 EGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQV 571
Query: 134 RDFRETFQDVGL----VTGDF-----QINTTASCLVMTTEILRSMLYRGSDVLRDLEYV- 183
R+F+ +G+ +TGD QI+ T LV T E + R S+ L +E V
Sbjct: 572 REFQRRLAFLGIKVAELTGDSRLSRKQIDET-QVLVSTPEKW-DITTRNSNNLAIVELVR 629
Query: 184 --IFDEVHYINDSERGHVWEEVLILL------PKEVC-IVMLSATVPNTLEFADWVGNTK 234
I DE+H ++D +RG V E ++ +E I+ LSAT+PN + ++ K
Sbjct: 630 LLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPK 688
Query: 235 KTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
+ Y S+ RP PL + G + E+N L
Sbjct: 689 EGLFYFDSSF-RPCPLSQ-QFCG-IKERNSL 716
Score = 81 (33.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQL 389
+++F SRK + A L F+ K+ + S + L+ E L L +L
Sbjct: 740 IIVFVHSRKETSRTAT-WLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDP--SLRKL 796
Query: 390 LKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+++GIG HH+G+ + + E LF GL++
Sbjct: 797 IESGIGTHHAGLTRSDRSLSEDLFADGLLQ 826
Score = 57 (25.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 332 LFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQLLK 391
+F SRK C + A+ M FS A E ++ + + ++ D L LK
Sbjct: 1583 VFLPSRKDCMEVASAF--MKFSKAIEWDMLNVEEEQIVPYIEKLTDG------HLRAPLK 1634
Query: 392 NGIGVHHSGILPILKEIVEMLFQKGLV 418
+G+G+ + G+ + IV+ L++ G V
Sbjct: 1635 HGVGILYKGMASNDERIVKRLYEYGAV 1661
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 119 (46.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 45/177 (25%), Positives = 84/177 (47%)
Query: 146 VTGDFQINTT---ASCLVMTT----EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
+TGD Q+ A+ +++TT +++ +D++ ++ +I DEVH +++ +RG
Sbjct: 380 LTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHE-DRGS 438
Query: 199 VWEEVLILLPKEV-------CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK 251
V E ++ ++V I+ LSAT+PN ++ AD++G ++ ++ RP PL+
Sbjct: 439 VIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLE 498
Query: 252 HFLY-----VGPVLEKNQLFLIR-EAEGEFLTRGYLAAKEVKCRKQLEKXXXXXXKL 302
L G K + + + E + RGY V RK+ K KL
Sbjct: 499 QQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKL 555
Score = 117 (46.2 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 42/156 (26%), Positives = 77/156 (49%)
Query: 64 PIMAHTWPFE-LDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRT 119
P++ +PF+ + Q L N + FV + T +GKT++AE AI A +
Sbjct: 1129 PLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKI 1188
Query: 120 IYTSPIKALSNQKYRDFRE-----TFQDVGLVTGDFQINTT----ASCLVMTTEILR--S 168
+Y +P+KAL ++ D+R+ T V +TGD + A+ ++ T E S
Sbjct: 1189 VYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGIS 1248
Query: 169 MLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVL 204
++ ++D+ +I DE+H + S+RG + E ++
Sbjct: 1249 RNWQTRKFVQDVSLIIMDEIHLLA-SDRGPILEMIV 1283
Score = 86 (35.3 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQL 389
V++F SRK ++A N + + A ++ F D I + + K ++++
Sbjct: 535 VMVFVHSRKETVKSARNFIKL----AESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEI 590
Query: 390 LKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ G G+HH+G+ + + E +F+ G +K
Sbjct: 591 FQFGFGIHHAGMARSDRNLTEKMFKDGAIK 620
Score = 80 (33.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/116 (25%), Positives = 53/116 (45%)
Query: 305 PFTRGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
P + K +F++ + S + P ++F SR++ A +L+ + E + RF
Sbjct: 1350 PLMKTMNKPVFMAIKQH---SPDKPALIFVASRRQTRLTALDLIHL---CGMEDNP-RRF 1402
Query: 365 FQ-DSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
D LQ + +L L+ GIG+HH+G++ + I LFQK ++
Sbjct: 1403 LNIDDEEELQYYLSQVTDDTLKLS--LQFGIGLHHAGLVQKDRSISHQLFQKNKIQ 1456
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 148 (57.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 56/227 (24%), Positives = 106/227 (46%)
Query: 52 VSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIAL 111
VS ++D+ A+ I A + +++DV + + E H+ +A TSAGK+++AE
Sbjct: 12 VSSKIIDYYAEQNIKA-LFDWQIDVLNEA---RQFEDQHLIFSAPTSAGKSIVAELLSWK 67
Query: 112 SQNHKTRTIYTSPIKALSNQKYRDFRETFQ--DVGLVTGDF--QINTTASCL--VMTTEI 165
+ + ++ P +++ +K + ++ D+ V G Q + L V T E
Sbjct: 68 VASTGRKVLFVLPYISVAREKLHQIQRCWRRDDIS-VCGFIGPQASNPNEWLGAVCTIEK 126
Query: 166 LRSMLYRG--SDVLRDLEYVIFDEVHYINDSERG----HVWEEVLILLP---KEVCIVML 216
S+ R D ++ ++ DE+H + DS RG H+ +VL+ ++V I+ +
Sbjct: 127 AASLTNRALSEDWFEEIGMIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGM 186
Query: 217 SATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKN 263
SAT+P W+ K V RP+ L++ + +G L K+
Sbjct: 187 SATIPELYRIGKWLDGAK-----VFEARFRPIVLQNHIVIGSELRKS 228
Score = 51 (23.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 20/100 (20%), Positives = 47/100 (47%)
Query: 320 NYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRA 379
++ R SQ L ++ L ++ N A+ T + +I + + + +++ +R
Sbjct: 249 SFRRNSQTLVMISSKLDAEKTALNIASRFHEINKTDSSLLEILKERANGLLFIKHGLERN 308
Query: 380 LPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF-QKGLV 418
+ + + L G+ HH+G+ +E +E+ F +K +V
Sbjct: 309 GCKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNIV 348
Score = 42 (19.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 312 KNLFISFL-NYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIR 370
+ LFI+ N L + + L L+ D N NL++ D E S F +D+++
Sbjct: 1434 RQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEELSIQWNFPRDAVK 1493
Query: 371 NL 372
L
Sbjct: 1494 QL 1495
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 113 (44.8 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 44/165 (26%), Positives = 77/165 (46%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQIN----TTASCLVMTTEILRSM 169
+ +Y SP+KAL ++ +F G+ +TGD Q+ +V T E +
Sbjct: 590 KIVYISPLKALVQEQVENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVI 649
Query: 170 LYRGSDV--LRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV-------CIVMLSATV 220
+ S+ + + +I DE+H ++D ERG V E ++ ++V IV LSAT+
Sbjct: 650 TRKASETSYTKLVRLIIIDEIHLLHD-ERGPVIESIVSRTIRQVEQTGDAVRIVGLSATL 708
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
PN + A ++ ++ RP PLK ++G V +K +
Sbjct: 709 PNYRDVASFLRVDPAKGLFHFDGSYRPCPLKQE-FIG-VTDKKPI 751
Score = 106 (42.4 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 41/152 (26%), Positives = 72/152 (47%)
Query: 70 WPFELDVFQKQAIIKL-EEHNHVFVTAHTSAGKTVIAEYAIAL--SQNHKTRTIYTSPIK 126
W + + Q Q L E ++VF+ A T +GKTV AE AI ++ R +Y +P +
Sbjct: 1381 WEY-FNKIQTQTFKTLFESDDNVFIGAPTGSGKTVCAELAILRHWAKEDSGRAVYVAPFQ 1439
Query: 127 ALSNQKYRDFRETFQDV----------GLVTGDFQINTTASCLVMTT----EILRSMLYR 172
L + + D+++ + G +T D +I S LV+ T ++L +
Sbjct: 1440 ELIDSRLEDWKKRLSGLAGGKSIAKLTGEMTADLKI-LAGSDLVLATPTQWDVLSRQWQK 1498
Query: 173 GSDVLRDLEYVIFDEVHYINDSERGHVWEEVL 204
+V R +E + DE+H + G+V+E V+
Sbjct: 1499 RKNV-RAVELFVADELHMLG-GYGGYVYEVVV 1528
Score = 101 (40.6 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 38/119 (31%), Positives = 60/119 (50%)
Query: 144 GLVTGDFQINTTASCLVMTT----EILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHV 199
G +T D +I S LV+ T ++L + +V R +E + DE+H + G+V
Sbjct: 1467 GEMTADLKI-LAGSDLVLATPTQWDVLSRQWQKRKNV-RAVELFVADELHMLG-GYGGYV 1523
Query: 200 WEEVL-----ILLPKE--VCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK 251
+E V+ I L E + IV LS + N + +W+G +K T +Y S RPVPL+
Sbjct: 1524 YEVVVSRMHSIALQTESGMRIVGLSVPLSNARDIGEWIGASKHT-IYNFSPHARPVPLE 1581
Score = 82 (33.9 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 317 SFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNED 376
++L+ L+ S + P ++F +RK+ A +LL+ + + + + RF I LQ
Sbjct: 1603 AYLSILQLSADKPALIFVPNRKQTRATAIDLLT---ACSIDDDE-DRFLHADIEELQPLL 1658
Query: 377 DRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
R + L + L +GIG +H + K IV L+ G ++
Sbjct: 1659 GRV--HERTLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQ 1699
Score = 68 (29.0 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 25/103 (24%), Positives = 52/103 (50%)
Query: 319 LNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQ-DSI-RNLQNED 376
+ ++ +++N +++F SRK + A L A E I + + DS R + E+
Sbjct: 766 IEHVGQNRN-QMLIFVHSRKETAKTAKYLRDK----ALEMETIGQILKSDSASRAILAEE 820
Query: 377 DRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ L+ +L G G+HH+G+ ++ V+ LF+ G ++
Sbjct: 821 AESVNDAA-LKDILPYGFGIHHAGLSLADRDSVQALFKDGSIQ 862
Score = 65 (27.9 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 86 EEHNHVFVTAHTSAGKTVIAEYAIA--LSQNHKTRT----------IYTSPIKALSNQKY 133
++ ++ V A T +GKT +A +I + +N ++T +Y SP+KAL ++
Sbjct: 546 QDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKIVYISPLKALVQEQV 605
Query: 134 RDFRETFQDVGL----VTGDFQI 152
+F G+ +TGD Q+
Sbjct: 606 ENFGRRLAPYGIKVAELTGDRQL 628
Score = 43 (20.2 bits), Expect = 9.4e-07, Sum P(4) = 9.4e-07
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 32 KISNTLPKHVTQTEWAEMLDVSKPVLDFDAK 62
+I + L + E+ E++++ K + D+DA+
Sbjct: 170 EIDDLLGTSLDPKEFNELVNLGKKITDYDAQ 200
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 133 (51.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 55/209 (26%), Positives = 97/209 (46%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNH----------KTRTIYTSPIKALSNQKY 133
L H+ + A T AGKT +A + NH + + +Y +P+K+L +
Sbjct: 487 LRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMV 546
Query: 134 RDFRETFQDVGL----VTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRD--LEYV 183
F + G+ +TGD Q++ +V T E + +G + + + +
Sbjct: 547 GSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLL 606
Query: 184 IFDEVHYINDSERGHVWEEVLILLPKEV------C-IVMLSATVPNTLEFADWVGNTKKT 236
I DE+H ++D +RG V E +++ +++ C +V LSAT+PN + A ++ K
Sbjct: 607 IIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFL-RVKPE 664
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
++ RPVPL+ Y+G V EK L
Sbjct: 665 HLHFFDNSYRPVPLEQ-QYIG-VTEKKAL 691
Score = 68 (29.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/103 (26%), Positives = 49/103 (47%)
Query: 314 LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD---SIR 370
++ + + KSQ V++F SRK + A + EK + F ++ S
Sbjct: 701 VYDKIMEHAGKSQ---VLVFVHSRKETAKTAKAIRD----ACLEKDTLSAFMREGSASTE 753
Query: 371 NLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
L+ E ++A + L+ LL G +HH+G+ + + +VE LF
Sbjct: 754 ILRTEAEQA--KNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLF 794
Score = 60 (26.2 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIR 370
E+ ++ + + K + P ++F R++ A LL+M + K RF +R
Sbjct: 1537 ERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPK----RF----LR 1588
Query: 371 NLQNEDD-RALP---QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+++D +AL + + L + + G+G H G P IV+ LF+ ++
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQ 1641
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 133 (51.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 55/209 (26%), Positives = 97/209 (46%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNH----------KTRTIYTSPIKALSNQKY 133
L H+ + A T AGKT +A + NH + + +Y +P+K+L +
Sbjct: 487 LRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMV 546
Query: 134 RDFRETFQDVGL----VTGDFQINT----TASCLVMTTEILRSMLYRGSDVLRD--LEYV 183
F + G+ +TGD Q++ +V T E + +G + + + +
Sbjct: 547 GSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLL 606
Query: 184 IFDEVHYINDSERGHVWEEVLILLPKEV------C-IVMLSATVPNTLEFADWVGNTKKT 236
I DE+H ++D +RG V E +++ +++ C +V LSAT+PN + A ++ K
Sbjct: 607 IIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFL-RVKPE 664
Query: 237 KVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
++ RPVPL+ Y+G V EK L
Sbjct: 665 HLHFFDNSYRPVPLEQ-QYIG-VTEKKAL 691
Score = 68 (29.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/103 (26%), Positives = 49/103 (47%)
Query: 314 LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD---SIR 370
++ + + KSQ V++F SRK + A + EK + F ++ S
Sbjct: 701 VYDKIMEHAGKSQ---VLVFVHSRKETAKTAKAIRD----ACLEKDTLSAFMREGSASTE 753
Query: 371 NLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
L+ E ++A + L+ LL G +HH+G+ + + +VE LF
Sbjct: 754 ILRTEAEQA--KNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLF 794
Score = 60 (26.2 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIR 370
E+ ++ + + K + P ++F R++ A LL+M + K RF +R
Sbjct: 1537 ERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPK----RF----LR 1588
Query: 371 NLQNEDD-RALP---QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+++D +AL + + L + + G+G H G P IV+ LF+ ++
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQ 1641
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 127 (49.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 51/168 (30%), Positives = 84/168 (50%)
Query: 113 QNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQIN----TTASCLVMTTE 164
QN K +Y +P+KAL + +F + + +TGD Q+ + +V T E
Sbjct: 573 QNFKI--VYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPE 630
Query: 165 ILRSMLYRGSDV--LRDLEYVIFDEVHYINDSERGHVWEEVLILLPK-------EVCIVM 215
+ + +D+ + + VI DEVH ++D ERG V E ++ + + +V +V
Sbjct: 631 KWDIITRKANDLSYVNLVRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVG 689
Query: 216 LSATVPNTLEFADWVG-NTKKTKVYVVSTLKRPVPLKHFLYVGPVLEK 262
LSAT+PN + A ++ + KK Y ST RP PLK ++G + EK
Sbjct: 690 LSATLPNYTDVASFLHVDPKKGLFYFDSTY-RPCPLKQE-FIG-ITEK 734
Score = 73 (30.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 312 KNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRN 371
K ++ S N++ SQ ++FT RK Q A +L++ FS A E + ++ N
Sbjct: 1582 KPIYRSLKNFI--SQRKSTIVFTPDRKVAKQLAFDLVT--FSMADEDEYLFSLMENEAFN 1637
Query: 372 LQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+D AL +Q LK+GI + IV+ L++ GL+K
Sbjct: 1638 --KVEDAAL------QQSLKHGIAYISEITSSNDQNIVQYLYRHGLIK 1677
Score = 60 (26.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 31/120 (25%), Positives = 51/120 (42%)
Query: 305 PFTRGAEKN--LFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKI- 361
PF R N + + + K+Q V++F SRK + A + A E+ I
Sbjct: 736 PFKRMQTTNEACYEKVMQHAGKNQ---VLIFVHSRKETAKTARFIRDK----ALEEETIG 788
Query: 362 HRFFQDSIRN--LQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
H D+ L+ E D + L+ LL G +HH+G+ ++ E LF G ++
Sbjct: 789 HLLRSDAASREILRAEADSTSDE--NLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQ 846
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 134 (52.2 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 55/199 (27%), Positives = 96/199 (48%)
Query: 25 EVDIPILKISNTLPKHVTQTEWAEMLDVSK-PVLDFDAKV--PIMAHTWPFELDVFQKQA 81
E P+ +SN + H E+LD+ P+ V I A + F + Q Q
Sbjct: 1086 ETVTPV-SLSNVV-FHDDSNPITELLDLQPLPITALHDPVLEGICAKRFSF-FNAVQTQF 1142
Query: 82 IIKL-EEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDF-R 137
+ ++FV A T +GKT+ AE A AL K++ +Y +P+KAL ++ +D+
Sbjct: 1143 FHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGH 1202
Query: 138 ETFQDVGL----VTGDFQIN----TTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIF 185
+ +G+ +TGD + T A+ ++ T E I RS ++ ++D+ +I
Sbjct: 1203 RLVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKWDGITRS--WKSRKYVQDVSLIIL 1260
Query: 186 DEVHYINDSERGHVWEEVL 204
DE+H + S+RG V E ++
Sbjct: 1261 DEIHLLG-SDRGPVLEMIV 1278
Score = 121 (47.7 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 40/124 (32%), Positives = 65/124 (52%)
Query: 146 VTGDFQINTT----ASCLVMTTE---ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
+TGD Q+ T LV T E ++ + + + VI DEVH ++D ERG
Sbjct: 374 LTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHD-ERGA 432
Query: 199 VWEEV------LILLPKEVC-IVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK 251
V E + L+ +++ IV LSAT+PN L+ AD++G + ++ S+ RP P++
Sbjct: 433 VIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIE 492
Query: 252 -HFL 254
HF+
Sbjct: 493 QHFI 496
Score = 81 (33.6 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQL 389
V++F SRK N+A L F E + + Q + ++ + K L++L
Sbjct: 527 VMIFVHSRKETI-NSAKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKS--KNKELKEL 583
Query: 390 LKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
K +G+H++G+L + + E LF G++K
Sbjct: 584 FKYSMGIHNAGMLRSDRHLTERLFSMGILK 613
Score = 63 (27.2 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF-FQDSIRNLQNEDDRALPQV 383
S PV++F SR++ A +L++ F + + RF + D + E + + +V
Sbjct: 1360 SPTQPVLIFVSSRRQTRLTAKDLIA--FCGLEDNPR--RFLYMD-----EEELEMIVSEV 1410
Query: 384 --KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
K L+ L GI +HH+G+ ++I E LF V+
Sbjct: 1411 EDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQ 1448
Score = 42 (19.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQN-AANLLSM 350
RG + +S +NY+ N V + LS + N AN L++
Sbjct: 1270 RGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNI 1313
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 83 IKLEEHNHVFVTAHTSAGKTVIAEYAI 109
I + + ++ + A T AGKT +A A+
Sbjct: 288 IAYKTNENMLICAPTGAGKTDVALLAM 314
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 132 (51.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 55/218 (25%), Positives = 99/218 (45%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
LE N V+ +A TSAGKT++AE I + + ++ P +++ +K + FQ+V
Sbjct: 106 LEGKNLVY-SAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 164
Query: 144 GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLR--------DL-EYVIFDEVHYINDS 194
G+ + +T+ S + +I + R + ++ DL V+ DE+H + DS
Sbjct: 165 GIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDS 224
Query: 195 ERGHVWEEVL-----ILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK---- 245
RG++ E +L I C L++++ N ++ ++ V S L
Sbjct: 225 HRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLEL-VASWLNAELY 283
Query: 246 ----RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279
RPVPL + VG + + + L+RE E +G
Sbjct: 284 HTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKG 321
Score = 67 (28.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 29/122 (23%), Positives = 63/122 (51%)
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK--IHRFF 365
+G E ++ +S L Y N V+LF S+K C++ A++++ +F +++ +
Sbjct: 320 KGDEDHV-VS-LCYETICDNHSVLLFCPSKKWCEK-LADIIAREFYNLHHQAEGLVKPSE 376
Query: 366 QDSIRNLQNEDDRALPQVKRL----EQLLKN----GIGVHHSGILPILKEIVEMLFQKGL 417
+ Q E + Q++RL + +L+ G+ HH+G+ ++I+E F++GL
Sbjct: 377 CPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGL 436
Query: 418 VK 419
++
Sbjct: 437 IR 438
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 123 (48.4 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 54/198 (27%), Positives = 97/198 (48%)
Query: 89 NHVFVTAHTSAGKTVIAEYAIA--LSQNH-----KTRT-----IYTSPIKALSNQKYRDF 136
N++ ++A TS+GKT +A I + +N K R +Y +P+K+L + +F
Sbjct: 568 NNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNF 627
Query: 137 RETFQDVGLV----TGDFQINT---TASCLVMTTEILRSMLYR--GSDVLRDL-EYVIFD 186
+ + G+V TGD + + + +++TT ++ R G L + +I D
Sbjct: 628 SKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIID 687
Query: 187 EVHYINDSERGHVWE----EVLILLPKE---VCIVMLSATVPNTLEFADWVGNTKKTKVY 239
E+H ++D ERG V E L ++ V +V LSAT+PN + A ++ + V+
Sbjct: 688 EIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATFL-RVEPDGVF 745
Query: 240 VVSTLKRPVPLKHFLYVG 257
+ RP+PL+ Y+G
Sbjct: 746 YFDSSYRPIPLEQ-QYIG 762
Score = 115 (45.5 bits), Expect = 9.4e-05, Sum P(3) = 9.4e-05
Identities = 39/135 (28%), Positives = 70/135 (51%)
Query: 86 EEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETF--- 140
+ +++ F++A T++GKTV AE A+ QN K + +Y +P++ L++ + +D+ F
Sbjct: 1411 QSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVK 1470
Query: 141 QDVGLV----TGDFQINTTA---SCLVMTT----EILRSMLYRGSDVLRDLEYVIFDEVH 189
GLV TGD + S +++T +IL S ++ L+ + +I DE+H
Sbjct: 1471 SPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDIL-SRKWKQRKALQSINLLIVDELH 1529
Query: 190 YINDSERGHVWEEVL 204
I E G E V+
Sbjct: 1530 LIG-GEYGPTMEIVV 1543
Score = 81 (33.6 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 316 ISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD-SIRNLQN 374
I+F + + +++F SR+ + +L A E I R+ +D + R +
Sbjct: 777 ITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDR----AVEDQSIDRYIRDPASREILR 832
Query: 375 EDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
Q L+ LL GIG+HH+G+ + +VE LF
Sbjct: 833 ATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLF 871
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 22/96 (22%), Positives = 48/96 (50%)
Query: 324 KSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQV 383
K++N ++F +RK AA++++ S +K + ++ + ED +
Sbjct: 1624 KNKNQQSIVFVPTRKLSRSLAADIIANVSSFEDTLTKPYLVCEEHVLTPYLEDVDSFA-- 1681
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
L+Q L+ G+ +H G+ + +VE+LF+ G ++
Sbjct: 1682 --LKQSLQMGVAFYHDGLTERERRVVEILFRSGSIR 1715
Score = 39 (18.8 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 31 LKISNTLPKHVTQTEWAEMLDVSKPVLDF 59
++IS L K + +AE+ + K + DF
Sbjct: 183 IEISKLL-KGLNDVSFAELTQLGKQITDF 210
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 145 (56.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 59/215 (27%), Positives = 106/215 (49%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK-TRTIYTSPIKALSNQK--Y-RD----- 135
L EH ++ +A TSAGKT+++E + + + + + P ++ +K Y +D
Sbjct: 246 LFEHCNLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPA 305
Query: 136 -FR-ETFQDVGLVTGDFQINTTASCLV-MTTEILRSMLYRGSDVLRDLEYVIFDEVHYIN 192
+R E F G F+ A C + I+ ++ +G L + V+ DEVH I+
Sbjct: 306 GYRVEGFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQGK--LETIGMVVVDEVHLIS 363
Query: 193 DSERGHVWEEVL--ILLPK-----EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK 245
D RG++ E +L IL ++ ++ +SAT+ N W+ ++Y+ T
Sbjct: 364 DKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWLD----AELYI--TNY 417
Query: 246 RPVPLKHFLYVGPVLEKNQLFLIRE-AEGEFLTRG 279
RPV LK + VG V+ ++L L+R+ A+ + L +G
Sbjct: 418 RPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLLKG 452
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 25/103 (24%), Positives = 48/103 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATE-KSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
V++F S+ C+ L++ +TA + K +R N + RA+ +VK+ +
Sbjct: 474 VIVFCPSKDWCEN-----LAVQLATAIHVQIKSETVLGQRLRT--NLNPRAIAEVKQQLR 526
Query: 389 LLKNGI-GV-----------HHSGILPILKEIVEMLFQKGLVK 419
+ G+ GV HH+G+ ++I+E F+ G +K
Sbjct: 527 DIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALK 569
Score = 39 (18.8 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLLSMD--FSTATEKSKIHR---FFQDSIRNLQNEDD 377
+K+ L V+ T + D+N AN M+ ++K R D++ + N+
Sbjct: 1069 QKNPRLETVVDTQRGYKVDKNIANQSKMNPNLKEIDAQNKARRNSTAHMDNLNPISNDPC 1128
Query: 378 RALPQVKRLEQLLKN 392
+ VK + ++ N
Sbjct: 1129 QNNVNVKTAQPIISN 1143
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 109 (43.4 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 32/114 (28%), Positives = 61/114 (53%)
Query: 103 VIAEYAIALSQ-NHKT-RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQINTT- 155
VI Y + N K + +Y SP+KAL N++ + F + + + +TGD ++T
Sbjct: 755 VINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKE 814
Query: 156 ---ASCLVMTTEILRSMLYRGSD--VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
+ +VMT E + + ++ +L ++ +IFDE+H +N+ RG+V E ++
Sbjct: 815 LDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEM-RGNVLESII 867
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 308 RGAEKNLFISFLNY---LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
+G +K ++ L Y L ++ +++F SRK + LL F + SK
Sbjct: 1017 KGIKKYALMNELTYEKVLEEAGKNQILIFVHSRKET-YRTSKLLIDRFMKSDNLSKFLID 1075
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
+ S L +E + + + L+++L G G+HH+G+ + +++VE LF
Sbjct: 1076 KKISSEILLSEKEHVINE--ELKEILPFGFGIHHAGLKRLDRKLVEDLF 1122
Score = 71 (30.1 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 370 RNLQNEDDRALPQV--KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
RN +NE+ + K L Q +K GI H+ + I K+IVE+LF K ++
Sbjct: 2282 RNNKNEE-HVFDYINDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQ 2332
Score = 71 (30.1 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 213 IVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267
+ + S ++ N+ +FA+W+G KK Y + R +P++ +L+ ++ K ++
Sbjct: 2025 LCLSSCSLYNSKDFAEWIG-CKKNDYYNFLSTVRDIPIEIYLHAVNIMNKQNRYI 2078
Score = 51 (23.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 191 INDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL 250
+N + E + + K++ +V LSAT+PN + ++ + ++ RPV +
Sbjct: 947 VNSVRQNKYGENHISIRRKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQI 1006
Query: 251 KHFLYVGPVLEK 262
+ Y+G + EK
Sbjct: 1007 EQH-YIG-IKEK 1016
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLL 348
+K QN V++F +K C A +L+
Sbjct: 2098 KKMQN--VIIFVTDQKLCKTLALDLI 2121
Score = 37 (18.1 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
+KN I+F NYL + N + +F K+ +N L+
Sbjct: 1543 KKN--ITFKNYLTMNLNEYITIF--KNKKIAKNIYKLV 1576
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 109 (43.4 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 32/114 (28%), Positives = 61/114 (53%)
Query: 103 VIAEYAIALSQ-NHKT-RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQINTT- 155
VI Y + N K + +Y SP+KAL N++ + F + + + +TGD ++T
Sbjct: 755 VINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKE 814
Query: 156 ---ASCLVMTTEILRSMLYRGSD--VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
+ +VMT E + + ++ +L ++ +IFDE+H +N+ RG+V E ++
Sbjct: 815 LDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEM-RGNVLESII 867
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 308 RGAEKNLFISFLNY---LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRF 364
+G +K ++ L Y L ++ +++F SRK + LL F + SK
Sbjct: 1017 KGIKKYALMNELTYEKVLEEAGKNQILIFVHSRKET-YRTSKLLIDRFMKSDNLSKFLID 1075
Query: 365 FQDSIRNLQNEDDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
+ S L +E + + + L+++L G G+HH+G+ + +++VE LF
Sbjct: 1076 KKISSEILLSEKEHVINE--ELKEILPFGFGIHHAGLKRLDRKLVEDLF 1122
Score = 71 (30.1 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 370 RNLQNEDDRALPQV--KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
RN +NE+ + K L Q +K GI H+ + I K+IVE+LF K ++
Sbjct: 2282 RNNKNEE-HVFDYINDKMLRQFMKKGICYLHNNMTEIEKKIVEILFDKKTIQ 2332
Score = 71 (30.1 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 213 IVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 267
+ + S ++ N+ +FA+W+G KK Y + R +P++ +L+ ++ K ++
Sbjct: 2025 LCLSSCSLYNSKDFAEWIG-CKKNDYYNFLSTVRDIPIEIYLHAVNIMNKQNRYI 2078
Score = 51 (23.0 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 191 INDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPL 250
+N + E + + K++ +V LSAT+PN + ++ + ++ RPV +
Sbjct: 947 VNSVRQNKYGENHISIRRKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQI 1006
Query: 251 KHFLYVGPVLEK 262
+ Y+G + EK
Sbjct: 1007 EQH-YIG-IKEK 1016
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 323 RKSQNLPVVLFTLSRKRCDQNAANLL 348
+K QN V++F +K C A +L+
Sbjct: 2098 KKMQN--VIIFVTDQKLCKTLALDLI 2121
Score = 37 (18.1 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 311 EKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLL 348
+KN I+F NYL + N + +F K+ +N L+
Sbjct: 1543 KKN--ITFKNYLTMNLNEYITIF--KNKKIAKNIYKLV 1576
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 121 (47.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 66/222 (29%), Positives = 102/222 (45%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR--TIYTSPIKALSNQKYRDFRETFQD 142
LE N V+ +A TSAGKT++AE I L + +TR ++ P +++ +K + FQ+
Sbjct: 107 LEGKNLVY-SAPTSAGKTLVAELLI-LKRVLETRKKALFILPFVSVAKEKKYYLQSLFQE 164
Query: 143 VGLVTGDFQINTTA----SCL---VMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYIND 193
VG+ + +T+ S L V T E ++ R + + L V+ DE+H + D
Sbjct: 165 VGIKVDGYMGSTSPTGRFSSLDVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGD 224
Query: 194 SERGHVWEEVLILLPKEVCIVM-----LSATVPNTLEFA-DWVGN--TKKTKVYVVSTLK 245
S RG++ E +LL K VC V A + L A VG T V S L
Sbjct: 225 SHRGYLLE---LLLTK-VCFVTRKSASCQADSASALACAVQIVGMSATLPNLQLVASWLN 280
Query: 246 --------RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279
RPVPL + VG + + + L+RE + +G
Sbjct: 281 AELYHTDFRPVPLLESIKVGNSIYDSSMKLVREFQPLLQVKG 322
Score = 75 (31.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 32/123 (26%), Positives = 64/123 (52%)
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK--IHRF- 364
+G E ++ +S L Y N V++F S+K C++ A++++ +F + + +
Sbjct: 321 KGDEDHI-VS-LCYETVRDNHSVLVFCPSKKWCEK-VADIIAREFYNLHHQPEGLVKSSE 377
Query: 365 FQDSIRNLQNEDDRALPQVKR----LEQLLKN----GIGVHHSGILPILKEIVEMLFQKG 416
F I + Q + Q+KR L+ +LKN G+ HH+G+ ++I+E F++G
Sbjct: 378 FPPVILD-QKSLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQG 436
Query: 417 LVK 419
L++
Sbjct: 437 LIR 439
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 121 (47.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 66/222 (29%), Positives = 102/222 (45%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR--TIYTSPIKALSNQKYRDFRETFQD 142
LE N V+ +A TSAGKT++AE I L + +TR ++ P +++ +K + FQ+
Sbjct: 107 LEGKNLVY-SAPTSAGKTLVAELLI-LKRVLETRKKALFILPFVSVAKEKKYYLQSLFQE 164
Query: 143 VGLVTGDFQINTTA----SCL---VMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYIND 193
VG+ + +T+ S L V T E ++ R + + L V+ DE+H + D
Sbjct: 165 VGIKVDGYMGSTSPTGRFSSLDVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGD 224
Query: 194 SERGHVWEEVLILLPKEVCIVM-----LSATVPNTLEFA-DWVGN--TKKTKVYVVSTLK 245
S RG++ E +LL K VC V A + L A VG T V S L
Sbjct: 225 SHRGYLLE---LLLTK-VCFVTRKSASCQADSASALACAVQIVGMSATLPNLQLVASWLN 280
Query: 246 --------RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279
RPVPL + VG + + + L+RE + +G
Sbjct: 281 AELYHTDFRPVPLLESIKVGNSIYDSSMKLVREFQPLLQVKG 322
Score = 75 (31.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 32/123 (26%), Positives = 64/123 (52%)
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK--IHRF- 364
+G E ++ +S L Y N V++F S+K C++ A++++ +F + + +
Sbjct: 321 KGDEDHI-VS-LCYETVRDNHSVLVFCPSKKWCEK-VADIIAREFYNLHHQPEGLVKSSE 377
Query: 365 FQDSIRNLQNEDDRALPQVKR----LEQLLKN----GIGVHHSGILPILKEIVEMLFQKG 416
F I + Q + Q+KR L+ +LKN G+ HH+G+ ++I+E F++G
Sbjct: 378 FPPVILD-QKSLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQG 436
Query: 417 LVK 419
L++
Sbjct: 437 LIR 439
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 124 (48.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 54/218 (24%), Positives = 98/218 (44%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQ-NHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
LE N V+ +A TSAGKT++AE I + + ++ P +++ +K + FQ+V
Sbjct: 238 LEGKNLVY-SAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEV 296
Query: 144 GLVTGDFQINTTA----SCL---VMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYINDS 194
G+ + +T+ S L V T E ++ R + + L V+ DE+H + DS
Sbjct: 297 GIKVDGYMGSTSPTRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDS 356
Query: 195 ERGHVWE----EVLILLPKEV-CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK---- 245
RG++ E ++ + K C L+ + N ++ ++ V S L
Sbjct: 357 HRGYLLELLLTKICYITQKSASCQADLAIPLSNAVQIVGMSATLPNLEL-VASWLNAELY 415
Query: 246 ----RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279
RPVPL + +G + + + L+RE + +G
Sbjct: 416 HTDFRPVPLLESIKIGNSIYDSSMKLVREFQPMLQVKG 453
Score = 72 (30.4 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 29/124 (23%), Positives = 65/124 (52%)
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQD 367
+G E ++ +S L Y N V+LF S+K C++ A++++ +F + ++++ +
Sbjct: 452 KGDEDHV-VS-LCYETVRDNHSVLLFCPSKKWCEK-LADIIAREFYSLHHQAEVTGLVRS 508
Query: 368 S-IRNLQNEDD---RALPQVKR----LEQLLKN----GIGVHHSGILPILKEIVEMLFQK 415
S + + E + Q+KR L+ +L+ G+ HH+G+ ++I+E F++
Sbjct: 509 SELPPVMLEQKGLLEVMDQLKRSPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQ 568
Query: 416 GLVK 419
G ++
Sbjct: 569 GQIR 572
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 107 (42.7 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 44/162 (27%), Positives = 79/162 (48%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGLV----TGDFQIN---TTASCLVMTTEILRSML 170
+ +Y +P+KAL + + +D G++ +GD + + +++TT ++
Sbjct: 561 KIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDII 620
Query: 171 YR--GSDVLRDL-EYVIFDEVHYINDSERGHVWEEVL------ILLPKE-VCIVMLSATV 220
R G L +I DE+H ++D+ RG V E ++ I KE + +V LSAT+
Sbjct: 621 TRKSGDRTYTQLVRLLIIDEIHLLHDN-RGPVLESIVARTLRQIETTKENIRLVGLSATL 679
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEK 262
PN + A ++ K ++ RPVPL H Y+G ++K
Sbjct: 680 PNYEDVALFLRVDLKKGLFKFDRSYRPVPL-HQQYIGISVKK 720
Score = 106 (42.4 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 52/218 (23%), Positives = 99/218 (45%)
Query: 7 PHSLGRVLRGQNSGSNRREVDIPILKISNTLP-KHVTQTEWAEMLDVSKPVL---DFDAK 62
P RV+ + GS E +P+ LP K+ TE ++ + L +++
Sbjct: 1288 PQYFVRVVSDKWLGS---ETVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEIL 1344
Query: 63 VPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK-----T 117
H P + VF + +++V V A T +GKT+ AE+AI L +H+
Sbjct: 1345 YQDFKHFNPVQTQVFT----VLYNTNDNVLVAAPTGSGKTICAEFAI-LRNHHEGPDATM 1399
Query: 118 RTIYTSPIKALSNQKYRDFRETF-QDVGL----VTG----DFQINTTASCLVMTTEILRS 168
R +Y +P++A++ +++R + F + +GL +TG D ++ ++ T E +
Sbjct: 1400 RVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDA 1459
Query: 169 MLYRGSD--VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
+ R ++ + I DE+H I + G V E ++
Sbjct: 1460 LSRRWKQRKYVQQVSLFIVDELHLIG-GQHGPVLEVIV 1496
Score = 88 (36.0 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFF-QDSIRN--LQNEDDRALPQVKRL 386
V++F SRK + A + TA + RF +DS+ L + +D + + L
Sbjct: 745 VLIFVHSRKETSKTARAIRD----TAMANDTLSRFLKEDSVTRDVLHSHED--IVKNSDL 798
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ +L G +HH+G+ +EIVE LF +G V+
Sbjct: 799 KDILPYGFAIHHAGLSRGDREIVETLFSQGHVQ 831
Score = 70 (29.7 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKR--L 386
P ++F +RK A +L++ + F + L D + Q++ L
Sbjct: 1584 PAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPD---FLLGKLEEL----DPFVEQIREETL 1636
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ L +GIG H G+ + +EIV LF+ G ++
Sbjct: 1637 KETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQ 1669
Score = 44 (20.5 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1 MWGEVLPHSLG-RVLRGQ 17
+WG++ P S G RV +G+
Sbjct: 46 LWGKIDPRSFGDRVAKGR 63
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 144 (55.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 64/213 (30%), Positives = 104/213 (48%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR--TIYTSPIKALSNQKYRDFRETFQD 142
LE N V+ +A TSAGKT+++E I L + +TR ++ P +++ +K + FQ+
Sbjct: 313 LEGQNLVY-SAPTSAGKTLVSELLI-LKRVLETRQKAMFILPFVSVAREKMFYLQNVFQE 370
Query: 143 VGLVTGDFQINTTA----SCL---VMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYIND 193
G+ + +T+A S L V T E ++ R D L L V+ DE+H + D
Sbjct: 371 AGIRVEGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDLLGTVVVDELHMVGD 430
Query: 194 SERGHVWEEVLI----LLPKE------------VCIVMLSATVPNTLEFADWVGNTKKTK 237
S RG++ E +L + K V I+ +SAT+PN A W+ +
Sbjct: 431 SGRGYLLELLLTKIRYIAQKTATRNSGQSTSTGVQIIGMSATLPNLDLLARWLS----AE 486
Query: 238 VYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIRE 270
+Y ST RPVPL ++ +G + L L+R+
Sbjct: 487 LY--STNYRPVPLMEWVKIGTNIYDGSLNLVRQ 517
Score = 55 (24.4 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 24/97 (24%), Positives = 45/97 (46%)
Query: 331 VLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKR----L 386
+LF S+ C++ A+ + +F K SI Q L Q+KR L
Sbjct: 546 LLFCPSKNWCEK-LADSIGREFYNLHHKEMQSGSGGQSISLNQEGLLDVLAQLKRTPAGL 604
Query: 387 EQLLKN----GIGVHHSGILPILKEIVEMLFQKGLVK 419
+ +L+ G+ HH+G+ ++I+E F++G ++
Sbjct: 605 DHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGYIR 641
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 9 SLGRVLRGQN 18
+LG+VL GQN
Sbjct: 308 TLGKVLEGQN 317
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 111 (44.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 55/195 (28%), Positives = 88/195 (45%)
Query: 89 NHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL--- 145
N +T GK + + I +Q+ K IY +P+K+L + +F L
Sbjct: 511 NVALLTMMREIGKHINEDGTIN-AQDFKI--IYVAPMKSLVQEMVGNFGRRLACYNLTVS 567
Query: 146 -VTGDFQIN----TTASCLVMTTEILRSMLYRGSD--VLRDLEYVIFDEVHYINDSERGH 198
+TGD Q+ +V T E + +G + + + VI DE+H ++D ERG
Sbjct: 568 ELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHD-ERGP 626
Query: 199 VWEEVLI-------LLPKEVCIVMLSATVPNTLEFADWVGNTKKTK-VYVVSTLKRPVPL 250
V E ++ +EV +V LSAT+PN + A ++ K K ++ RPV L
Sbjct: 627 VLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFL-RVKPDKGLFYFDNSYRPVSL 685
Query: 251 KHFLYVGPVLEKNQL 265
+ Y+G V EK L
Sbjct: 686 EQ-QYIG-VTEKKAL 698
Score = 86 (35.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 322 LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFST-ATEKSKIHRFFQDSIRNLQNEDDRAL 380
L+ S + PV++F SRK+ A L ++D T A + +RFF +++ +R
Sbjct: 1550 LKYSAHKPVIVFVSSRKQ-----ARLTAIDVLTYAASDLQPNRFFHAEEEDIKPFLERMT 1604
Query: 381 PQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
K L++ L G+ H G+ +VE LF G V+
Sbjct: 1605 D--KTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQ 1641
Score = 74 (31.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKR--LE 387
V++F SRK + A + M E+ + F ++ +++ A QVK L+
Sbjct: 721 VLVFVHSRKETGKTARAVRDM----CLEQDTLGSFLKEGSASMEVLRTEA-EQVKNTELK 775
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
+LL G +HH+G+ + + +VE LF
Sbjct: 776 ELLPYGFAIHHAGMTRVDRTLVEDLF 801
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 309 GAEKNLFISFLNYLRKSQNLP 329
GAE L +SF + + +N+P
Sbjct: 1277 GAETQLPVSFRHLILPEKNMP 1297
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 114 (45.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 39/127 (30%), Positives = 70/127 (55%)
Query: 93 VTAHTSAGKTVIAEYAI-ALSQNHK-TRTIYTSPIKALSNQKYRDFRETFQD-VGL---- 145
+ A T +GKT+ AE A+ L Q+H + +Y +P+K+L ++ D+++ F+D +G
Sbjct: 1200 IGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVE 1259
Query: 146 VTGDFQINT---TASCLVMTTE-----ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERG 197
V+GD + AS +++TT I RS R + +R + ++ DEVH + +RG
Sbjct: 1260 VSGDVTPDPEELAASSILITTPEKWDGISRSWATR--EYVRRVGLIVLDEVHLLG-VDRG 1316
Query: 198 HVWEEVL 204
V E ++
Sbjct: 1317 AVLEAIV 1323
Score = 102 (41.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 47/158 (29%), Positives = 78/158 (49%)
Query: 76 VFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTR---------TIYTSP 124
VF+ QA K +E+ + + A T AGKT IA I + ++ +R IY +P
Sbjct: 319 VFE-QAY-KTKEN--LLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAP 374
Query: 125 IKALSNQKYRDFRETFQDVGL----VTGDFQI--NTTASC--LVMTTE---ILRSMLYRG 173
+KAL+ + F + +GL +TGD Q+ N A LV+T E ++
Sbjct: 375 MKALATEMTESFGKRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSD 434
Query: 174 SDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEV 211
+ ++ + +I DEVH ++D ERG V E ++ ++V
Sbjct: 435 NSLINVVRLLIIDEVHLLHD-ERGPVIETLVARTLRQV 471
Score = 76 (31.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 322 LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
L S PV++F SR++ A +++ + K ++ D L+ ED A
Sbjct: 1406 LTYSPRKPVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLN---MDM---LELEDLMAAI 1459
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLF 413
+ + L+ L GIG+HH+G+ + IVE LF
Sbjct: 1460 KDENLKLTLPFGIGMHHAGLSAHERAIVEQLF 1491
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 137 (53.3 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 54/194 (27%), Positives = 89/194 (45%)
Query: 97 TSAGKTVIAEYAI---ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGL-VTGDFQI 152
TS GKT++AE + L +N K+ I+ P ++ +K E + + V G
Sbjct: 479 TSGGKTLVAEIILFRNLLIKNKKSLFIF--PFVSIVCEKTESMHEFSSALQIPVEGYHGC 536
Query: 153 NTTAS---------CLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203
N T C + I+ + L +L D+ V+ DE+H I D ERG + E +
Sbjct: 537 NGTIPVLPGKRLLICTIEKANIIVNQLIEDGRLL-DIGCVVVDEIHMIGDGERGQLLEVL 595
Query: 204 ---LILLPK-EVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV 259
L+ + K ++ I+ +SAT+PN W + VY T RPVPL ++ +G
Sbjct: 596 ISKLLYMSKGQIQIIGMSATIPNIDNLQKWF----RGGVYQ-GTF-RPVPLTEYIKIGDK 649
Query: 260 LEKNQLFLIREAEG 273
L + L++ +G
Sbjct: 650 LYDKENNLVKSLQG 663
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 118 (46.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGD------FQINTTASCLVMTTEILR 167
+ +Y +PIKAL +Q++ D++E F +GL +TGD F+I A ++ T E
Sbjct: 11 KIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQH-AHIIMTTPEKWD 69
Query: 168 SML--YRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223
SM +R + +++ + + DEVH + D RG E +++ + + +S T+ NT
Sbjct: 70 SMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLE---VVVSRMKTVQSVSQTLKNT 124
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMD---FSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
S P ++F +RK Q AA++L D T +K ++ ++ S+R+
Sbjct: 204 SDQKPTLVFCATRKGVQQ-AASVLVKDAKFIMTVEQKQRLQKYAY-SVRD---------- 251
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L +LK+G HH+G+ +++VE F G
Sbjct: 252 --SKLRDILKDGAAYHHAGMELSDRKVVEGAFTVG 284
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 112 (44.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 136 FRETFQD----VGLVTGDFQINTTASCLVMTT----EILRSMLYRGSDVLRDLEYVIFDE 187
FR+ D G+ T D++ + S +++T EIL +R + V R + YVIFDE
Sbjct: 826 FRKNLPDGEALCGVFTRDYRHDALNSQILITVPACFEILLLAPHRQAWVKR-IRYVIFDE 884
Query: 188 VHYINDSERGHVWEEVLILLPKEVC-IVMLSATVPNTLEFADWVGNTKK 235
VH + +WE +L+++ C + LSAT+ N +W+ + K+
Sbjct: 885 VHCLGGEIGAEIWEHLLVMIR---CPFLALSATISNPEHLTEWLQSVKR 930
Score = 76 (31.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 370 RNLQNEDDRALPQVK--RLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
+ LQ DR K L+ L G+G HHS + K++VE+LF+KG ++
Sbjct: 1228 QTLQTVFDRVKLTRKGAELKALAARGVGYHHSSLNFKEKQLVEILFRKGFIR 1279
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 132 (51.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 47/159 (29%), Positives = 79/159 (49%)
Query: 112 SQNHKTRTIYTSPIKALSNQKYRDFRETFQD--VGLVTGD---FQINTTASC-LVMTTEI 165
S + T+ IY +P K+L + Y+++ +F + VG++T D + C +++TT
Sbjct: 184 SDTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPE 243
Query: 166 LRSMLYRG-SDVLRDLEYV---IFDEVHYINDSERGHVWEEVLILLP---KEVCIVMLSA 218
+L R SD R E V + DE+H I + +RG E +L + + + V LSA
Sbjct: 244 KWDLLTRRWSDYSRLFELVKLVLVDEIHTIKE-KRGASLEVILTRMNTMCQNIRFVALSA 302
Query: 219 TVPNTLEFADWVGNTKKTKVYVVSTLK--RPVPLKHFLY 255
TVPN + A W+ + ++S + R V L F+Y
Sbjct: 303 TVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVY 341
Score = 122 (48.0 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 44/149 (29%), Positives = 75/149 (50%)
Query: 73 ELDVFQKQAIIKLEEHN-HVFVTAHTSAGKTVIAEYAIAL------SQNHKTRTIYTSPI 125
E + Q +A + E N + +++ T +GKTV+ E AI S + T+ IY +P
Sbjct: 138 EFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPT 197
Query: 126 KALSNQKYRDFRETFQD--VGLVTGD---FQINTTASC-LVMTTEILRSMLYRG-SDVLR 178
K+L + Y+++ +F + VG++T D + C +++TT +L R SD R
Sbjct: 198 KSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSR 257
Query: 179 DLEYV---IFDEVHYINDSERGHVWEEVL 204
E V + DE+H I + +RG E +L
Sbjct: 258 LFELVKLVLVDEIHTIKE-KRGASLEVIL 285
Score = 53 (23.7 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 381 PQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLV 418
P K L + ++ GI HH+GI + VE F G +
Sbjct: 408 PSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSI 445
Score = 40 (19.1 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 332 LFTLSRKRCDQNAAN 346
+F+ S+KRC+ N ++
Sbjct: 396 IFSKSKKRCNHNPSD 410
Score = 37 (18.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 262 KNQLFLIREAEGEFLTRGYLAAKEVK 287
KN LFL+R G + +++K
Sbjct: 759 KNTLFLLRSLNGHCWENTPMVLRQLK 784
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 110 (43.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 42/165 (25%), Positives = 80/165 (48%)
Query: 118 RTIYTSPIKALSNQKYRDFRETFQDVGL----VTGDFQI---NTTASCLVMTTEILRSML 170
+ IY +P+++L + F + G+ +TGD Q+ +A+ +++ T ++
Sbjct: 537 KIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDII 596
Query: 171 YR--GSDVLRDL-EYVIFDEVHYINDSERGHVWEEVLI-------LLPKEVCIVMLSATV 220
R G L +I DE+H ++D +RG V E ++ + ++V ++ LSAT+
Sbjct: 597 TRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATL 655
Query: 221 PNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQL 265
PN + A ++ ++ RPVPL+ YVG + EK +
Sbjct: 656 PNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQ-TYVG-ITEKKAI 698
Score = 72 (30.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLE-- 387
V++F SRK + A + M EK + F ++ + + A Q K LE
Sbjct: 721 VLVFVHSRKETGKTARAIRDM----CLEKDTLGLFLREGSASTEVLRTEA-EQCKNLELK 775
Query: 388 QLLKNGIGVHHSGILPILKEIVEMLF 413
LL G +HH+G+ + + +VE LF
Sbjct: 776 DLLPYGFAIHHAGMTRVDRTLVEDLF 801
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 112 (44.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 45/180 (25%), Positives = 85/180 (47%)
Query: 48 EMLDVSK-PVL-----DFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGK 101
E+LD+ PV+ ++ H P + VF + ++V V A T +GK
Sbjct: 1325 ELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFT----VLYNTSDNVVVAAPTGSGK 1380
Query: 102 TVIAEYAIALSQNH------KTRTIYTSPIKALSNQKYRDFRETF-QDVGL----VTG-- 148
T+ AE+AI +NH R +Y +P++A++ +++RD+ + F + +GL +TG
Sbjct: 1381 TICAEFAIL--RNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGET 1438
Query: 149 --DFQINTTASCLVMTTEILRSMLYRGSD--VLRDLEYVIFDEVHYINDSERGHVWEEVL 204
D ++ ++ T E ++ R ++ + I DE+H I + G V E ++
Sbjct: 1439 LLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIG-GQGGQVLEVIV 1497
Score = 109 (43.4 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 118 RTIYTSPIKALS-------NQKYRDFRETFQDVG---LVTGDFQINTTASCLVMTTEILR 167
+ +Y +P+KAL +Q+ +DF T +++ +TG +I T +++TT
Sbjct: 562 KIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQ-EIKETQ--IIVTTPEKW 618
Query: 168 SMLYR--GSDVLRDL-EYVIFDEVHYINDSERGHVWEEVL------ILLPKE-VCIVMLS 217
++ R G L +I DE+H ++D+ RG V E ++ I KE + +V LS
Sbjct: 619 DIITRKSGDRTYTQLVRLLIIDEIHLLDDN-RGPVLESIVARTLRQIESTKEHIRLVGLS 677
Query: 218 ATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEK 262
AT+PN + A ++ K +++ RPVPL Y+G ++K
Sbjct: 678 ATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQ-QYIGINVKK 721
Score = 76 (31.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQV--KRL 386
P ++F +RK A +L++ + K F + NL+ E + L Q+ + L
Sbjct: 1585 PAIVFVPTRKHVRLTAVDLIAYSHM---DNMKSPDFL---LGNLE-ELEPFLIQICEETL 1637
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLVK 419
++ L++GIG H G+ + +EIV LF+ G ++
Sbjct: 1638 KETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQ 1670
Score = 73 (30.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRA-LPQVKRLEQ 388
V++F SRK + A + TA + RF ++ ++ + A L + L++
Sbjct: 746 VLIFVHSRKETAKTARAIRD----TAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKE 801
Query: 389 LLKNGIGVHHSGILPILKEIVEMLFQKG 416
LL G +HH+G+ +EIVE F+ G
Sbjct: 802 LLPYGFAIHHAGLTRTDREIVENQFRWG 829
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 97 (39.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 35/126 (27%), Positives = 61/126 (48%)
Query: 137 RETFQDVGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYIN 192
++ + G VT D + A +V T E + RS ++ + ++ + +I DE+H +
Sbjct: 14 KKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVKQVTILIIDEIHLLG 71
Query: 193 DSERGHVWEEVLILL-------PKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK 245
+ ERG V E ++ K V IV LS + N + ADW+ N ++ ++
Sbjct: 72 E-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIRQMGLFNFRPSV 129
Query: 246 RPVPLK 251
RPVPL+
Sbjct: 130 RPVPLE 135
Score = 68 (29.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
PV++F SR++ A L++ ATE+ D R ++N + L+
Sbjct: 169 PVLIFVSSRRQTRLTALELIAF---LATEEDPKQWLNMDE-REMENIIGTI--RDSNLKL 222
Query: 389 LLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 223 TLAFGIGMHHAGLHERDRKTVEELF 247
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 115 (45.5 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 60/221 (27%), Positives = 102/221 (46%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR--TIYTSPIKALSNQKYRDFRETFQD 142
LE N V+ +A TSAGKT++AE I L + +TR ++ P +++ +K + FQ+
Sbjct: 71 LEGKNLVY-SAPTSAGKTLVAELLI-LKRVLETRKKALFILPFVSVAKEKKCYLQALFQE 128
Query: 143 VGLVTGDFQ--INTTA--SCL---VMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYIND 193
V + G + I+ S L V T E ++ R + + L V+ DE+H + D
Sbjct: 129 VDMRVGGYMGSISPAGRFSLLDVAVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGD 188
Query: 194 SERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVG-------NTKKTKVYVVSTLK- 245
S RG++ E +LL K I +A ++ + G T + S L
Sbjct: 189 SHRGYLLE---LLLTKVRYITEKAAKRKTKMKSPGFGGIQVVGMSATLPNLGLLASWLDA 245
Query: 246 -------RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279
RPVPLK ++ +G + + + L+RE + + +G
Sbjct: 246 ELYCTDFRPVPLKEWVKIGNNIYDSSMNLVREFQPKLQLKG 286
Score = 60 (26.2 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 22/100 (22%), Positives = 49/100 (49%)
Query: 330 VVLFTLSRKRCDQNAANLLSMDFSTA--TEKSKIHRFFQDSIRNLQNEDDRALPQVKR-- 385
V+LF S+ C++ A++++ +F + EK + + D L Q++R
Sbjct: 305 VLLFCPSKNWCEK-LADIIAREFYSLQQAEKGSAKNSSLSPVVVDREGIDEVLDQLRRSL 363
Query: 386 --LEQLLKN----GIGVHHSGILPILKEIVEMLFQKGLVK 419
L+ +L+ G+ HH+G+ ++I+E F++ ++
Sbjct: 364 SGLDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQSTIR 403
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 124 (48.7 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 53/219 (24%), Positives = 101/219 (46%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQ--NHKTRTIYTSPIKALSNQKYRDFRETFQD 142
LE N V+ +A TSAGKT++AE + L + + + ++ P +++ +K + FQ+
Sbjct: 15 LEGKNLVY-SAPTSAGKTLVAEL-LMLKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQE 72
Query: 143 VGLVTGDFQINTTA----SCL---VMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYIND 193
+G+ + +T+ S L V T E ++ R + + L V+ DE+H + D
Sbjct: 73 IGINVDGYMGSTSPTGHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGD 132
Query: 194 SERGHVWE----EVLILLPKEV-CIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLK--- 245
S RG++ E ++ + K C L++ + N ++ ++ V S L
Sbjct: 133 SHRGYLLELLLTKICYITHKSASCQADLASPLSNAVQIVGMSATLPNLEI-VASWLNAEL 191
Query: 246 -----RPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRG 279
RPVPL + +G + + + L+RE + +G
Sbjct: 192 YHTNFRPVPLLESVKIGNSIYDSSMKLVREFQPNLQVKG 230
Score = 57 (25.1 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 28/122 (22%), Positives = 63/122 (51%)
Query: 308 RGAEKNLFISFLNYLRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSK-IHRFFQ 366
+G E ++ +S L Y N V++F S+K C++ A++++ +F ++ + R +
Sbjct: 229 KGDEDHV-VS-LCYETICDNHSVLIFCPSKKWCEK-LADIIACEFYNLHHQATGLVRSSE 285
Query: 367 DSIRNLQNEDD-RALPQVKR----LEQLLKN----GIGVHHSGILPILKEIVEMLFQKGL 417
L+ + + Q+KR L+ +L+ G+ HH+G+ ++I+E F++G
Sbjct: 286 LPPVVLEQKGLLEVMDQLKRSPSGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQ 345
Query: 418 VK 419
++
Sbjct: 346 IR 347
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 113 (44.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/186 (25%), Positives = 88/186 (47%)
Query: 37 LP-KHVTQTEWAEMLDVSKPVLDFDAKVPI--MAHTWPFELDVFQKQAIIKLEEHNHVFV 93
LP +H TE ++ + L +A + +H P + +F + + N V +
Sbjct: 1292 LPERHPPHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHT---LYHTDCN-VLL 1347
Query: 94 TAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--------- 142
A T +GKTV AE AI ++ ++ +Y +P+KAL ++ D++ ++
Sbjct: 1348 GAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIEL 1407
Query: 143 VGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
G VT D + A +V T E + RS ++ + ++ + +I DE+H + + ERG
Sbjct: 1408 TGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVKQVTILIIDEIHLLGE-ERGP 1464
Query: 199 VWEEVL 204
V E ++
Sbjct: 1465 VLEVIV 1470
Score = 68 (29.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
PV++F SR++ A L++ ATE+ D R ++N + L+
Sbjct: 1557 PVLIFVSSRRQTRLTALELIAF---LATEEDPKQWLNMDE-REMENIIGTL--RDSNLKL 1610
Query: 389 LLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 1611 TLAFGIGMHHAGLHERDRKTVEELF 1635
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 114 (45.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 47/186 (25%), Positives = 88/186 (47%)
Query: 37 LP-KHVTQTEWAEMLDVSKPVLDFDAKVPI--MAHTWPFELDVFQKQAIIKLEEHNHVFV 93
LP +H TE ++ + L +A + +H P + +F + + N V +
Sbjct: 1292 LPERHPPHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHT---LYHTDCN-VLL 1347
Query: 94 TAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--------- 142
A T +GKTV AE AI ++ ++ +Y +P+KAL ++ D++ ++
Sbjct: 1348 GAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIEL 1407
Query: 143 VGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
G VT D + A +V T E + RS ++ + ++ + +I DE+H + + ERG
Sbjct: 1408 TGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVKQVTILIIDEIHLLGE-ERGP 1464
Query: 199 VWEEVL 204
V E ++
Sbjct: 1465 VLEVIV 1470
Score = 68 (29.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
PV++F SR++ A L++ ATE+ D R ++N + L+
Sbjct: 1557 PVLIFVSSRRQTRLTALELIAF---LATEEDPKQWLNMDE-REMENIIGTI--RDSNLKL 1610
Query: 389 LLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 1611 TLAFGIGMHHAGLHERDRKTVEELF 1635
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 110 (43.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 36/130 (27%), Positives = 67/130 (51%)
Query: 90 HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----- 142
+V + A T +GKTV AE AI ++ ++ +Y +P+KAL ++ D++ ++
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1403
Query: 143 ----VGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDS 194
G VT D + A +V T E + RS ++ + ++ + +I DE+H + +
Sbjct: 1404 VIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVQQVTILIIDEIHLLGE- 1460
Query: 195 ERGHVWEEVL 204
ERG V E ++
Sbjct: 1461 ERGPVLEVIV 1470
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
PV++F SR++ A L++ ATE+ D R ++N A + L+
Sbjct: 1557 PVLIFVSSRRQTRLTALELIAF---LATEEDPKQWLNMDE-REMENII--ATVRDSNLKL 1610
Query: 389 LLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 1611 TLAFGIGMHHAGLHERDRKTVEELF 1635
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 113 (44.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 47/186 (25%), Positives = 88/186 (47%)
Query: 37 LP-KHVTQTEWAEMLDVSKPVLDFDAKVPI--MAHTWPFELDVFQKQAIIKLEEHNHVFV 93
LP +H TE ++ + L +A + +H P + +F + + N V +
Sbjct: 1292 LPERHPPHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHT---LYHTDCN-VLL 1347
Query: 94 TAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD--------- 142
A T +GKTV AE AI ++ ++ +Y +P+KAL ++ D++ ++
Sbjct: 1348 GAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIEL 1407
Query: 143 VGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGH 198
G VT D + A +V T E + RS ++ + ++ + +I DE+H + + ERG
Sbjct: 1408 TGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVKQVTILIIDEIHLLGE-ERGP 1464
Query: 199 VWEEVL 204
V E ++
Sbjct: 1465 VLEVIV 1470
Score = 68 (29.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
PV++F SR++ A L++ ATE+ D R ++N + L+
Sbjct: 1557 PVLIFVSSRRQTRLTALELIAF---LATEEDPKQWLNMDE-REMENIIGTL--RDSNLKL 1610
Query: 389 LLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 1611 TLAFGIGMHHAGLHERDRKTVEELF 1635
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 109 (43.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 90 HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----- 142
+V + A T +GKTV AE AI ++ ++ +Y +P+KAL ++ D++ ++
Sbjct: 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKK 1404
Query: 143 ----VGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDS 194
G VT D + A +V T E + RS ++ ++ + +I DE+H + +
Sbjct: 1405 VIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRS--WQNRSYVQQVNILIIDEIHLLGE- 1461
Query: 195 ERGHVWEEVL 204
ERG V E ++
Sbjct: 1462 ERGPVLEVIV 1471
Score = 70 (29.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVK--RL 386
PV++F SR++ A L++ ATE+ D + E D + V+ L
Sbjct: 1558 PVLIFVSSRRQTRLTALELIAF---LATEEDPKQWLNMD-----EQEMDNIIGTVRDSNL 1609
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLF 413
+ L GIG+HH+G+ ++ VE LF
Sbjct: 1610 KLTLAFGIGMHHAGLHERDRKTVEELF 1636
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 87 (35.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 46/194 (23%), Positives = 81/194 (41%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTR---TIYTSPIKALSNQKYRDFRETFQ 141
++E ++ + TS GKT++AE I + Q R + P A+ +K
Sbjct: 308 VQERKNLIYSLPTSGGKTLVAE--ILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGI 365
Query: 142 DVGLVTGDF----------QINTTASCLVMTTEILRSMLYRGSDVLR--DLEYVIFDEVH 189
++G ++ + S + T E S++ + R L V+ DE+H
Sbjct: 366 ELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELH 425
Query: 190 YINDSERGHVWEEVL---ILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
I + RG + E L + K I+ +SAT+ N + ++ K + Y ++ R
Sbjct: 426 MIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFL----KAEYY--TSQFR 479
Query: 247 PVPLKHFLYVGPVL 260
PV LK FL V +
Sbjct: 480 PVELKEFLKVNDTI 493
Score = 86 (35.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 327 NLPVVLFTLSRKRCDQNAANL---LSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQV 383
N ++F S+K C+ A L LS D+ EK K S+RN+ N + P +
Sbjct: 536 NYSCLVFCPSKKNCENVAEMLCKFLSKDYLNHREKEKCEVI--KSLRNIGN--GKVCPVL 591
Query: 384 KRLEQLLKNGIGVHHSGILPILKEIVEMLFQKGLV 418
KR GI HHSG+ ++++E + G++
Sbjct: 592 KRTVPF---GIAYHHSGLTSEERKLLEEAYSTGVL 623
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 116 (45.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 37/130 (28%), Positives = 66/130 (50%)
Query: 90 HVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQD----- 142
+V + A T +GKTV AE AI ++ ++ +Y +P+KAL ++ D++ ++
Sbjct: 1353 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKK 1412
Query: 143 ----VGLVTGDFQINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVHYINDS 194
G VT D + A +V T E + RS ++ ++ + +I DE+H + D
Sbjct: 1413 VVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRS--WQNRSYVQKVSILIIDEIHLLGD- 1469
Query: 195 ERGHVWEEVL 204
ERG V E ++
Sbjct: 1470 ERGPVLEVIV 1479
Score = 62 (26.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 329 PVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRLEQ 388
PV++F SR++ + +L++ ATE D R + D + L+
Sbjct: 1566 PVLIFVSSRRQTRLTSLDLIAF---LATEDDPKQWLKMDE-REMN--DIIGTVRDSNLKL 1619
Query: 389 LLKNGIGVHHSGILPILKEIVEMLF 413
L GIG+HH+G+ ++ VE LF
Sbjct: 1620 TLAFGIGMHHAGLHERDRKTVEELF 1644
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 88 (36.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 43/190 (22%), Positives = 82/190 (43%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTS-PIKALSNQKYRDFRETFQDV 143
L++ ++ + TS GKT++AE I + + + P A+ +K ++
Sbjct: 256 LQQRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSSFGIEL 315
Query: 144 GLVTGDF----------QINTTASCLVMTTE----ILRSMLYRGSDVLRDLEYVIFDEVH 189
G + ++ + S + T E ++ S++ +D + DL V+ DE+H
Sbjct: 316 GFLVEEYAGSKGRFPPIKRRIKKSLYIATIEKGHALVNSLIE--TDRIDDLGLVVVDELH 373
Query: 190 YINDSERGHVWEEVL---ILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYVVSTLKR 246
I + RG V E L + K +V +SAT+ N + ++ TK + R
Sbjct: 374 MIGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDLQKFLQAEYYTKNF------R 427
Query: 247 PVPLKHFLYV 256
PV LK ++ +
Sbjct: 428 PVELKEYIKI 437
Score = 84 (34.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 331 VLFTLSRKRCDQNAANL----LSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVKRL 386
++F ++K C+ N A + L+ +F EK K QD I+NL++ + ++ V L
Sbjct: 488 LIFCPTKKNCE-NVATMVCKYLNKEFRAHREKEK-----QDLIKNLKDIGNGSICPV--L 539
Query: 387 EQLLKNGIGVHHSGILPILKEIVEMLFQKGLV 418
Q + G+ HHSG+ ++ +E + +G++
Sbjct: 540 RQTIPFGVAYHHSGLTNDERKSIEEAYSRGVL 571
>DICTYBASE|DDB_G0278827 [details] [associations]
symbol:DDB_G0278827 "Probable ATP-dependent RNA
helicase DDX60" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
Length = 1816
Score = 127 (49.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 37/128 (28%), Positives = 61/128 (47%)
Query: 143 VGLVTGDFQINT-TASCLVMTTEILRSMLYR--GSDVLRDLEYVIFDEVHYINDSERGHV 199
VG+ T DF++N T L+ + L + + ++ Y+IFDEVH I S G +
Sbjct: 903 VGVFTRDFRLNIETCQILITVPQCLEILFLSIMNTHFIQRCRYIIFDEVHQIASSVDGAI 962
Query: 200 WEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKT-KVYVVSTLKRPVPLKHFLYVGP 258
WE +L+ P + LSAT+ N +F +++ KV ++ R LK+F
Sbjct: 963 WERLLVFNPAP--FLALSATLGNLTDFHNFLKKIDPNRKVSLIHYQSRFNDLKNFFLCQT 1020
Query: 259 VLEKNQLF 266
+ N+ F
Sbjct: 1021 PAKDNKSF 1028
Score = 47 (21.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 23/99 (23%), Positives = 36/99 (36%)
Query: 320 NYLRKSQNLPVVL--F--TLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNE 375
N + + + L +V+ F +L R D + M+ K + + NL +
Sbjct: 1191 NIIEEKKQLDLVIERFQKSLGRALADLEPNDPEKMELERLKAKRASLDYLKPQFGNLLSS 1250
Query: 376 DDRALPQVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQ 414
D + L L GI HH G VE LF+
Sbjct: 1251 DIDEKVKKDPLAPALTQGIAAHHGGCDKNYLRNVEYLFR 1289
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 114 (45.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 43/142 (30%), Positives = 72/142 (50%)
Query: 90 HVFVTAHTSAGKTVIAEYAI------ALSQN----HKT---RTIYTSPIKALSNQKYRDF 136
++ ++A T +GKTV+ E I ++S+ H +T+Y SP KAL +K RD+
Sbjct: 42 NMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDW 101
Query: 137 RETFQDVGL----VTGDFQINTTASC----LVMTT-EILRSML-YR----GSDVLRDLEY 182
+ F G+ +TGD + +T + +++TT E ++ YR G D+
Sbjct: 102 NQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIAL 161
Query: 183 VIFDEVHYINDSERGHVWEEVL 204
V+ DEVH +ND RG E ++
Sbjct: 162 VLIDEVHLLNDP-RGAALEAIV 182
Score = 56 (24.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 322 LRKSQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALP 381
++ S+ ++F +RK Q AA L+ TA + F + + + + +
Sbjct: 269 MQYSKGKSALVFCSTRKGA-QEAAQKLAQ---TAMTYGYSNPFIKSREQLERLREASPMC 324
Query: 382 QVKRLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
K+++ + G+G H+ G+ + +VE LF G
Sbjct: 325 SDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNG 359
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 419 413 0.00080 118 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 117
No. of states in DFA: 614 (65 KB)
Total size of DFA: 250 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.33u 0.18s 33.51t Elapsed: 00:00:02
Total cpu time: 33.37u 0.18s 33.55t Elapsed: 00:00:02
Start: Thu Aug 15 17:39:09 2013 End: Thu Aug 15 17:39:11 2013
WARNINGS ISSUED: 1