RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2764
(419 letters)
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 87.7 bits (216), Expect = 9e-21
Identities = 41/169 (24%), Positives = 82/169 (48%), Gaps = 10/169 (5%)
Query: 73 ELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQK 132
EL Q +A+ K+ ++ + T+AGKT++AE A+ +++Y P++AL+ +K
Sbjct: 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEK 84
Query: 133 YRDFRE-------TFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIF 185
Y F++ G + +V T+E S++ + ++ + ++
Sbjct: 85 YESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144
Query: 186 DEVHYINDSERGHVWE---EVLILLPKEVCIVMLSATVPNTLEFADWVG 231
DE+H ++ +RG E + + K + ++ LSAT PN E A+W+
Sbjct: 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD 193
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 74.2 bits (181), Expect = 2e-15
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 2/139 (1%)
Query: 85 LEEHNHVFVTAHTSAGKT-VIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
+ + H AGKT + + RT+ +P + ++ + R
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 144 GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203
+ +M L + + +I DE H+ + +
Sbjct: 66 QTPAIRAEHTGREIVDLMCHATFTMRLLSPIR-VPNYNLIIMDEAHFTDPASIAARGYIS 124
Query: 204 LILLPKEVCIVMLSATVPN 222
+ E + ++AT P
Sbjct: 125 TRVEMGEAAGIFMTATPPG 143
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 65.9 bits (160), Expect = 4e-13
Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 78 QKQAI-IKLEEHNHVFVTAHTSAGKTVIAEYAI--ALSQNHKTRTIYTSPIKALSNQKYR 134
Q + I + L + ++ A T +GKT + +++N+ I +P + L+ Q
Sbjct: 31 QMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVAD 90
Query: 135 DFRETFQD----VGLVTGDFQINT------TASCLVMTTEILRSMLYRGSDVLRDLEYVI 184
+ + + + G I A+ +V T + + RG+ L++++Y I
Sbjct: 91 EIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFI 150
Query: 185 FDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
DE + + E++L K+ I++ SAT+P +
Sbjct: 151 LDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREIL 191
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 64.5 bits (156), Expect = 1e-12
Identities = 26/174 (14%), Positives = 46/174 (26%), Gaps = 32/174 (18%)
Query: 77 FQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDF 136
QK ++ TA T GKT R P L Q
Sbjct: 47 IQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETI 106
Query: 137 RETFQDVGLVTG-----------------DFQINTTASCLVMTTEILRSMLYRGSDVLRD 179
R+ + G+ T Q ++ TT+ L L
Sbjct: 107 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGH 162
Query: 180 LEYVIFDEVHYINDSERGHVW-----------EEVLILLPKEVCIVMLSATVPN 222
+++ D+V I + + + + C+++ +AT
Sbjct: 163 FDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKK 216
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 60.5 bits (145), Expect = 7e-12
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 2/138 (1%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSNQKYRDFRETFQDV 143
L++ + H AGKT I + RT+ +P + + ++ F
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 144 GLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEV 203
+ M L + + V + E +I DE H+++ +
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRV-VNWEVIIMDEAHFLDPASIAARGWAA 122
Query: 204 LILLPKEVCIVMLSATVP 221
E ++++AT P
Sbjct: 123 HRARANESATILMTATPP 140
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 58.6 bits (140), Expect = 9e-11
Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 12/187 (6%)
Query: 72 FELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALS-QNHKTRTIYTSPIKALSN 130
+ ++Q+ K +E N + T GKT+IA + + + +P K L
Sbjct: 8 IQPRIYQEVIYAKCKETN-CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66
Query: 131 QKYRDFRETFQDVGLVTGDFQINTT----------ASCLVMTTEILRSMLYRGSDVLRDL 180
Q FR F + A +V T + + + L G L D+
Sbjct: 67 QHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDV 126
Query: 181 EYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLEFADWVGNTKKTKVYV 240
++FDE H + K ++ L+A+ +T E V N +
Sbjct: 127 SLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIE 186
Query: 241 VSTLKRP 247
+ P
Sbjct: 187 YRSENSP 193
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 56.8 bits (136), Expect = 4e-10
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 15/170 (8%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
++ D +P L +Q++A+ + + T +GKT +A AI
Sbjct: 50 IEFVDNAADP---IPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI 106
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
T T+ P AL+ Q ++ +T S
Sbjct: 107 ---NELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE----LKPLTVSTYDSA 159
Query: 170 LYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSAT 219
+ +IFDEVH++ + ++ + + L+AT
Sbjct: 160 YVNAEKLGNRFMLLIFDEVHHL----PAESYVQIAQMSIAP-FRLGLTAT 204
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 56.8 bits (136), Expect = 5e-10
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 15/163 (9%)
Query: 78 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYR 134
Q++AI+ + V A + GKT +I T+ + +P + L+ Q +
Sbjct: 39 QQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQK 98
Query: 135 DFRETFQDVGLVTGDFQINTTASC------------LVMTTEILRSMLYRGSDVLRDLEY 182
+G T +V T + ML R + ++
Sbjct: 99 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 158
Query: 183 VIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
+ DE + ++ L +V+LSAT+P+ +
Sbjct: 159 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL 201
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 56.2 bits (134), Expect = 8e-10
Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 25/192 (13%)
Query: 47 AEMLDVSKPVLDFDAKVPIMAHTWPFE-LDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIA 105
AE+L++ ++ T+ ++ Q++ I + V T GK++
Sbjct: 4 AEVLNLESGAKQ------VLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCY 57
Query: 106 EYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTG-----------DFQINT 154
+ T+ SP+ +L + + +
Sbjct: 58 QIPA---LLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG 114
Query: 155 TASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWE----EVLILLPKE 210
L + E L + + + DE H I+ E L
Sbjct: 115 QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT 174
Query: 211 VCIVMLSATVPN 222
+ + L+AT +
Sbjct: 175 LPFMALTATADD 186
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 54.5 bits (130), Expect = 9e-10
Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 10/138 (7%)
Query: 85 LEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVG 144
+ + A T +GK+ A A + + +P A + +
Sbjct: 5 PQSFQVAHLHAPTGSGKSTKVPAAYA---AQGYKVLVLNPSVAATLGFGAYMSKAHGVD- 60
Query: 145 LVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYIN---DSERGHVWE 201
+ T + +T L G + +I DE H + G V +
Sbjct: 61 -PNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119
Query: 202 EVLILLPKEVCIVMLSAT 219
+V+ +AT
Sbjct: 120 --QAETAGARLVVLATAT 135
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 54.4 bits (130), Expect = 4e-09
Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 22/192 (11%)
Query: 50 LDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI 109
+ T + + + V GKT +A A
Sbjct: 38 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 97
Query: 110 ALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSM 169
L+ ++ + P L+ Q Y +FR+ F + + +A T+IL +
Sbjct: 98 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA---KEQTQILAEV 154
Query: 170 LYRGSDVL-------------RDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVML 216
D+L +DL +I DE H G +E + + V I+ L
Sbjct: 155 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH-----RFGVRHKERIKAMRANVDILTL 209
Query: 217 SAT-VPNTLEFA 227
+AT +P TL A
Sbjct: 210 TATPIPRTLNMA 221
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 54.9 bits (131), Expect = 4e-09
Identities = 24/172 (13%), Positives = 59/172 (34%), Gaps = 10/172 (5%)
Query: 58 DFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKT 117
++ +K+ I + E +QK A+ + + + TSAG+++I +
Sbjct: 98 EWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE 157
Query: 118 -RTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASC-----LVMTTEILRSMLY 171
+ + P AL+ Q DF + + + + ++++
Sbjct: 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVK 217
Query: 172 RGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNT 223
+ + ++ DE H G ++ L + LS ++ +
Sbjct: 218 QPKEWFSQFGMMMNDECHLA----TGKSISSIISGLNNCMFKFGLSGSLRDG 265
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 48.6 bits (115), Expect = 5e-07
Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 29/224 (12%)
Query: 40 HVTQTEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSA 99
+ + + + K T + + + + E+ + + +
Sbjct: 56 KEREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGS 115
Query: 100 GKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCL 159
GKTV+A+ AI + +T + P L+ Q YR E+F + A+
Sbjct: 116 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF---NIHVALLIGATTP 172
Query: 160 VMTTEILR-------------SMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLIL 206
+I L + ++L VI DE H G E L+
Sbjct: 173 SEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRF-----GVKQREALMN 227
Query: 207 LPKEVCIVMLSAT-VPNTLEFADWVGNTKKTKVYVVSTLKRPVP 249
K V +++SAT +P ++ A V+ + P
Sbjct: 228 KGKMVDTLVMSATPIPRSMALA-------FYGDLDVTVIDEMPP 264
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 46.9 bits (110), Expect = 1e-06
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 14/162 (8%)
Query: 78 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIA---LSQNHKTRTIYTSPIKALSNQKYR 134
Q++AI + A GKT + +K + + P + L+ Q +
Sbjct: 28 QEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQ 87
Query: 135 DFRETFQDVGLVTGDFQ-----------INTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183
R + G+ +N T LV T + + R L D
Sbjct: 88 VVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLF 147
Query: 184 IFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
I DE + + + E++L LP ++ SAT P T++
Sbjct: 148 IMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVK 189
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 46.5 bits (109), Expect = 1e-06
Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 78 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFR 137
Q+++I + A GK+ + + K I I + +
Sbjct: 30 QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 89
Query: 138 ETFQDVGLVTGDFQ---------------INTTASCLVMTTEILRSMLYRGSDVLRDLEY 182
Q + G ++ T ++ T + ++ +G + ++
Sbjct: 90 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQM 149
Query: 183 VIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
++ DE + + + E++++ LPK I++ SAT P +++
Sbjct: 150 IVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQ 192
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 46.0 bits (108), Expect = 2e-06
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 13/161 (8%)
Query: 78 QKQAIIKLEEHNHVFVTAHTSAGKTV---IAEYAIALSQNHKTRTIYTSPIKALSNQKYR 134
Q++AI+ + E + V A + GKT IA + + + +P + L+ Q +
Sbjct: 37 QQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQK 96
Query: 135 DFRETFQDVGLVTGDFQINTTASC----------LVMTTEILRSMLYRGSDVLRDLEYVI 184
+ + T+ +V T + + R ++ I
Sbjct: 97 VVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 156
Query: 185 FDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
DE + S ++ LLP +V+LSAT+PN +
Sbjct: 157 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVL 197
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 45.6 bits (107), Expect = 3e-06
Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 78 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAI---ALSQNHKTRTIYTSPIKALSNQKYR 134
Q + I + V A + GKT + A + + + L+ Q +
Sbjct: 28 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 87
Query: 135 DFRE-----TFQDVGLVTGDFQIN--------TTASCLVMTTEILRSMLYRGSDVLRDLE 181
++ V + G I +V T + ++ S L+ ++
Sbjct: 88 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 147
Query: 182 YVIFDEVHYINDS-ERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
+ I DE + + + +E+ + P E ++M SAT+ +
Sbjct: 148 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 192
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 41.8 bits (97), Expect = 6e-05
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 325 SQNLPVVLFTLSRKRCDQNAANLLSMDFSTATEKSKIHRFFQDSIRNLQNEDDRALPQVK 384
++N V++F +R+ ++ A L ++ + +++ +
Sbjct: 38 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEG----------EMSR 87
Query: 385 RLEQLLKNGIGVHHSGILPILKEIVEMLFQKG 416
+L + ++ G HH+G+L + +VE F++G
Sbjct: 88 KLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 119
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 41.8 bits (97), Expect = 7e-05
Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 14/162 (8%)
Query: 78 QKQAIIKLEEHNHVFVTAHTSAGKTVIAEY--------------AIALSQNHKTRTIYTS 123
Q++AI ++ + V + + GKT A+ L+ +
Sbjct: 44 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 103
Query: 124 PIKALSNQKYRDFRETFQDVGLVTGDFQINTTASCLVMTTEILRSMLYRGSDVLRDLEYV 183
+ AL + + +++ + T + M+ R S R ++ +
Sbjct: 104 GLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 163
Query: 184 IFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSATVPNTLE 225
+ DE + + +V LP +V++SAT+P+ +
Sbjct: 164 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEIL 205
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 37.6 bits (86), Expect = 0.002
Identities = 37/227 (16%), Positives = 78/227 (34%), Gaps = 43/227 (18%)
Query: 35 NTLPKHVTQTEWAEMLDVSKPVLDFD---------AKVPIMAHTWPFELDVFQKQAIIKL 85
+++P VT ++ + + +FD + + ++ P + QK AI +
Sbjct: 3 DSIPVSVTGPDY----SATNVIENFDELKLDPTIRNNILLASYQRPTPI---QKNAIPAI 55
Query: 86 EEHNHVFVTAHTSAGKTVIAEYAI------------ALSQNHKTRTIYTSPIKALSNQKY 133
EH + A T +GKT I S+ + + +P + L+ Q
Sbjct: 56 LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115
Query: 134 RDFRETFQDVGLVTG-----------DFQINTTASCLVMTTEILRSMLYRGSDVLRDLEY 182
+ ++ + L + ++ LV T L + + L +Y
Sbjct: 116 SESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175
Query: 183 VIFDEVHYINDSERGHVWEEVLILL----PKEVCIVMLSATVPNTLE 225
++ DE + D +++ +M SAT P ++
Sbjct: 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQ 222
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 35.8 bits (81), Expect = 0.005
Identities = 26/200 (13%), Positives = 69/200 (34%), Gaps = 25/200 (12%)
Query: 44 TEWAEMLDVSKPVLDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTV 103
T++ +++ + P E Q++ I + + T GKT
Sbjct: 1 TQFTR-FPFQPFIIEAIKT---LRFYKPTE---IQERIIPGALRGESMVGQSQTGTGKTH 53
Query: 104 ---IAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF---------- 150
+ + + + + T+P + L+ Q Y + + +
Sbjct: 54 AYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDK 113
Query: 151 -----QINTTASCLVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLI 205
++N ++ T + + + + ++ DE + D +++
Sbjct: 114 QKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAA 173
Query: 206 LLPKEVCIVMLSATVPNTLE 225
+PK++ +++ SAT+P L+
Sbjct: 174 RMPKDLQMLVFSATIPEKLK 193
>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 136
Score = 27.5 bits (60), Expect = 1.5
Identities = 18/143 (12%), Positives = 33/143 (23%), Gaps = 21/143 (14%)
Query: 57 LDFDAKVPIMAHTWPFELDVFQKQAIIKLEEHNHVFVTAHTSAGKTVIAEYAIALSQNHK 116
L A P D++ V T A + S
Sbjct: 8 LSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAA 67
Query: 117 TRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDF--QINTTASCLVMTTEILRSMLYRGS 174
I G++ D+ + ++
Sbjct: 68 KHFIDVGA-------------------GVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQ 108
Query: 175 DVLRDLEYVIFDEVHYINDSERG 197
+ + Y +EV ++D+ERG
Sbjct: 109 LICERIFYPEIEEVQALDDTERG 131
>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 206
Score = 27.3 bits (60), Expect = 2.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 117 TRTIYTSPIKALSNQKYRDF 136
TR IYT+P+ + +R
Sbjct: 9 TREIYTNPVLENFDGSFRGM 28
>d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis tenebrionis, CRYIIIA
(BT13) [TaxId: 1444]}
Length = 210
Score = 26.1 bits (57), Expect = 6.8
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 117 TRTIYTSPIKALSNQKYRDFRETFQDV 143
TR + T PI ++N R + TF ++
Sbjct: 11 TRDVLTDPIVGVNN--LRGYGTTFSNI 35
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 25.8 bits (56), Expect = 7.3
Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 24/140 (17%)
Query: 99 AGKTVIAEYAIALSQNHKTRTIYTSPIKALSNQKYRDFRETFQDVGLVTGDFQINTTASC 158
AGKT I + + K + + ++ + T+
Sbjct: 13 AGKT---AELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQS-----------RTGTSLPS 58
Query: 159 LVMTTEILRSMLYRGSDVLRDLEYVIFDEVHYINDSERGHVWEEVLILLPKEVCIVMLSA 218
+ + + + + + + DEV + +D +L V I L
Sbjct: 59 VEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVAN--ILAENGFVVIISGLDK 116
Query: 219 T--------VPNTLEFADWV 230
+ +AD +
Sbjct: 117 NFKGEPFGPIAKLFTYADKI 136
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.1 bits (56), Expect = 8.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 221 PNTLEFADWVGN---TKKTKVYVVSTLKRPVPLKHFLYVGP 258
P TL+ +++G +K +VY+ + R PL+H L GP
Sbjct: 5 PKTLD--EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGP 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,528,920
Number of extensions: 70263
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 30
Length of query: 419
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,199,356
Effective search space: 396986836
Effective search space used: 396986836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)