Query psy2768
Match_columns 96
No_of_seqs 150 out of 1047
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:39:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axy_A Poly(RC)-binding protei 99.8 5.8E-21 2E-25 111.2 7.5 71 21-92 2-72 (73)
2 1zzk_A Heterogeneous nuclear r 99.8 1.4E-20 4.9E-25 111.6 9.0 73 20-92 3-76 (82)
3 2p2r_A Poly(RC)-binding protei 99.8 8.4E-21 2.9E-25 111.1 7.8 72 22-93 3-75 (76)
4 1wvn_A Poly(RC)-binding protei 99.8 1.8E-20 6.2E-25 111.1 8.5 72 22-93 4-76 (82)
5 1dtj_A RNA-binding neurooncolo 99.8 2.2E-20 7.6E-25 109.1 8.3 70 23-92 2-75 (76)
6 1j5k_A Heterogeneous nuclear r 99.8 3E-20 1E-24 111.8 5.9 75 19-93 9-84 (89)
7 3krm_A Insulin-like growth fac 99.8 2.1E-19 7.2E-24 117.7 9.8 92 2-93 63-157 (163)
8 1ec6_A RNA-binding protein NOV 99.8 5.8E-20 2E-24 110.0 6.1 70 23-92 2-75 (87)
9 2opv_A KHSRP protein; KH domai 99.8 4E-19 1.4E-23 106.0 9.1 74 19-92 9-85 (85)
10 1x4n_A FAR upstream element bi 99.8 1.4E-19 4.9E-24 109.5 7.2 74 20-93 11-85 (92)
11 2hh2_A KH-type splicing regula 99.8 7.3E-19 2.5E-23 109.0 8.2 70 25-94 8-81 (107)
12 1x4m_A FAR upstream element bi 99.8 4.8E-19 1.6E-23 107.5 7.1 77 19-95 10-89 (94)
13 2hh3_A KH-type splicing regula 99.8 3.6E-19 1.2E-23 110.4 6.5 73 21-93 8-81 (106)
14 1we8_A Tudor and KH domain con 99.8 1E-18 3.5E-23 107.8 8.3 73 19-91 10-85 (104)
15 2dgr_A Ring finger and KH doma 99.8 3E-19 1E-23 106.4 5.4 72 19-92 5-76 (83)
16 2jzx_A Poly(RC)-binding protei 99.8 1E-18 3.4E-23 114.2 8.3 91 2-92 62-159 (160)
17 1vig_A Vigilin; RNA-binding pr 99.8 9.4E-19 3.2E-23 101.3 6.6 68 22-90 3-70 (71)
18 2ctm_A Vigilin; K homology typ 99.8 6.2E-19 2.1E-23 107.4 5.3 75 19-93 12-86 (95)
19 2ctl_A Vigilin; K homology typ 99.8 2.4E-18 8.1E-23 105.1 7.1 71 22-92 15-87 (97)
20 2cte_A Vigilin; K homology typ 99.7 3.3E-18 1.1E-22 103.8 6.0 71 21-92 14-84 (94)
21 2ctk_A Vigilin; K homology typ 99.7 5.8E-18 2E-22 104.6 5.6 73 19-92 12-84 (104)
22 2jvz_A KH type-splicing, FAR u 99.7 8.7E-18 3E-22 109.8 6.1 92 2-93 63-161 (164)
23 2anr_A Neuro-oncological ventr 99.7 1.9E-17 6.5E-22 109.8 7.8 92 2-93 68-176 (178)
24 1j4w_A FUSE binding protein; s 99.7 7.3E-17 2.5E-21 106.7 9.7 68 23-90 103-174 (174)
25 3krm_A Insulin-like growth fac 99.7 1.2E-16 4.2E-21 104.5 8.1 70 23-92 2-73 (163)
26 2jvz_A KH type-splicing, FAR u 99.7 1.9E-16 6.5E-21 103.4 8.4 70 24-93 2-74 (164)
27 2anr_A Neuro-oncological ventr 99.7 1.8E-16 6.3E-21 105.0 8.3 72 22-93 4-79 (178)
28 1j4w_A FUSE binding protein; s 99.7 1.7E-16 5.8E-21 104.9 7.2 70 23-92 2-72 (174)
29 2jzx_A Poly(RC)-binding protei 99.7 2.5E-16 8.7E-21 102.7 6.9 70 21-91 2-71 (160)
30 2ctj_A Vigilin; K homology typ 99.6 1.9E-16 6.6E-21 96.3 4.5 75 19-94 12-87 (95)
31 2ctf_A Vigilin; K homology typ 99.6 3.7E-15 1.3E-19 91.7 6.2 66 23-92 26-92 (102)
32 2qnd_A FMR1 protein; KH domain 99.5 9.7E-15 3.3E-19 94.5 6.2 68 25-92 68-142 (144)
33 2cpq_A FragIle X mental retard 99.5 1.6E-14 5.5E-19 87.1 4.5 69 20-92 11-81 (91)
34 3n89_A Defective in GERM LINE 99.4 1.9E-13 6.6E-18 100.1 6.0 71 19-89 25-103 (376)
35 2e3u_A PH-DIM2P, hypothetical 99.4 9.4E-13 3.2E-17 90.5 6.0 85 3-91 5-102 (219)
36 3n89_A Defective in GERM LINE 99.3 3.1E-12 1.1E-16 93.7 8.5 84 4-90 169-259 (376)
37 1k1g_A SF1-BO isoform; splicin 99.3 2.9E-12 9.8E-17 81.9 6.5 71 22-92 5-99 (131)
38 3u1k_A Polyribonucleotide nucl 99.3 6.3E-12 2.1E-16 97.2 6.7 83 3-90 543-629 (630)
39 2yqr_A KIAA0907 protein; struc 99.3 2.6E-11 8.9E-16 76.3 8.1 73 20-92 8-99 (119)
40 2e3u_A PH-DIM2P, hypothetical 99.2 2.6E-11 9E-16 83.3 6.5 53 34-92 139-191 (219)
41 2bl5_A MGC83862 protein, quaki 99.1 2.1E-10 7.1E-15 74.0 6.2 69 24-92 2-101 (140)
42 3v69_A Protein filia; RNA-bind 99.0 6E-10 2E-14 71.2 7.0 69 23-91 55-123 (140)
43 2qnd_A FMR1 protein; KH domain 99.0 2.8E-10 9.6E-15 73.4 4.5 63 22-86 2-64 (144)
44 1tua_A Hypothetical protein AP 99.0 2.5E-10 8.6E-15 77.0 4.2 53 34-92 108-160 (191)
45 4aid_A Polyribonucleotide nucl 99.0 1.1E-10 3.9E-15 91.3 2.6 88 3-95 546-637 (726)
46 1tua_A Hypothetical protein AP 98.9 3.4E-09 1.2E-13 71.4 6.1 63 26-92 6-73 (191)
47 3cdi_A Polynucleotide phosphor 98.4 7E-08 2.4E-12 75.7 1.9 87 3-94 536-626 (723)
48 1e3p_A Guanosine pentaphosphat 98.1 1.5E-07 5.1E-12 74.2 -3.1 83 3-90 575-660 (757)
49 2cxc_A NUSA; transcription ter 96.6 0.0018 6.3E-08 41.6 3.4 40 22-61 34-73 (144)
50 2cxc_A NUSA; transcription ter 95.5 0.0027 9.2E-08 40.8 0.3 39 22-60 101-139 (144)
51 2asb_A Transcription elongatio 95.4 0.013 4.5E-07 40.8 3.4 39 24-62 184-222 (251)
52 1k0r_A NUSA; two component arr 94.5 0.028 9.6E-07 41.0 3.3 39 24-62 307-345 (366)
53 1hh2_P NUSA, N utilization sub 94.4 0.03 1E-06 40.5 3.4 39 23-61 302-340 (344)
54 2pt7_G HP1451, hypothetical pr 92.1 0.086 2.9E-06 34.0 2.4 29 25-53 34-62 (152)
55 1wh9_A 40S ribosomal protein S 91.7 0.089 3E-06 31.1 2.0 28 25-52 36-63 (92)
56 2ba0_A Archeal exosome RNA bin 91.0 0.63 2.2E-05 31.6 6.0 59 26-89 138-196 (229)
57 2asb_A Transcription elongatio 87.1 0.23 7.7E-06 34.5 1.4 29 33-61 126-155 (251)
58 2z0s_A Probable exosome comple 85.4 4.1 0.00014 27.5 7.1 59 26-89 150-209 (235)
59 1k0r_A NUSA; two component arr 84.2 0.4 1.4E-05 35.0 1.6 29 33-61 249-278 (366)
60 3iev_A GTP-binding protein ERA 82.9 0.93 3.2E-05 31.5 3.0 39 22-60 238-285 (308)
61 3gku_A Probable RNA-binding pr 81.3 0.67 2.3E-05 31.6 1.7 59 25-85 93-152 (225)
62 3u5c_D RP13, YS3, 40S ribosoma 79.9 0.74 2.5E-05 31.7 1.6 28 25-52 45-72 (240)
63 3j20_C 30S ribosomal protein S 79.8 0.69 2.4E-05 31.3 1.4 26 26-51 42-67 (210)
64 2xzm_C KH domain containing pr 78.7 1 3.4E-05 31.1 2.0 29 24-52 47-75 (243)
65 3iz6_B 40S ribosomal protein S 76.5 0.74 2.5E-05 31.5 0.8 30 23-52 43-72 (227)
66 2zkq_c 40S ribosomal protein S 74.3 0.92 3.1E-05 31.3 0.8 30 23-52 43-72 (243)
67 1go3_E DNA-directed RNA polyme 73.7 2.7 9.1E-05 27.2 2.9 36 23-61 6-53 (187)
68 3r8n_C 30S ribosomal protein S 73.4 0.8 2.7E-05 30.8 0.3 34 26-59 63-100 (206)
69 1wf3_A GTP-binding protein; GT 72.5 0.75 2.6E-05 32.0 -0.0 35 26-60 232-275 (301)
70 2ja9_A Exosome complex exonucl 71.9 4.6 0.00016 26.2 3.7 55 27-86 94-150 (175)
71 3i1m_C 30S ribosomal protein S 71.4 0.97 3.3E-05 31.0 0.4 31 26-56 64-98 (233)
72 2vqe_C 30S ribosomal protein S 69.6 1.6 5.3E-05 30.1 1.1 27 26-52 64-90 (239)
73 3bbn_C Ribosomal protein S3; s 68.6 1.2 4.1E-05 30.2 0.3 27 26-52 72-98 (218)
74 1ega_A Protein (GTP-binding pr 67.7 6.1 0.00021 27.2 3.8 30 23-52 230-260 (301)
75 1hh2_P NUSA, N utilization sub 63.6 2.6 8.9E-05 30.4 1.3 29 33-61 245-274 (344)
76 2je6_I RRP4, exosome complex R 50.8 4.2 0.00014 27.9 0.5 35 27-61 158-192 (251)
77 3dhx_A Methionine import ATP-b 47.7 35 0.0012 19.8 4.3 60 23-88 21-87 (106)
78 1qd1_A Formiminotransferase-cy 46.9 61 0.0021 23.2 6.1 44 40-83 13-61 (325)
79 2nn6_G Exosome complex exonucl 44.0 6.4 0.00022 27.6 0.6 57 27-88 213-270 (289)
80 1tt9_A Formimidoyltransferase- 42.3 64 0.0022 24.7 5.9 44 40-83 14-62 (541)
81 2qsw_A Methionine import ATP-b 30.5 77 0.0026 17.9 4.5 58 25-88 25-89 (100)
82 2qrr_A Methionine import ATP-b 30.3 78 0.0027 17.9 4.3 58 25-88 25-89 (101)
83 3big_A Fructose-1,6-bisphospha 25.0 1.6E+02 0.0055 21.1 5.3 41 44-85 171-223 (338)
84 3cim_A Carbon dioxide-concentr 23.7 1.2E+02 0.0039 17.7 4.1 45 48-92 22-66 (99)
85 3i96_A Ethanolamine utilizatio 23.3 77 0.0026 19.2 3.0 56 33-91 39-98 (119)
86 1y14_B B16, RPB7, DNA-directed 23.0 7.4 0.00025 24.7 -1.8 27 20-46 20-46 (171)
87 2fgc_A Acetolactate synthase, 22.0 1.7E+02 0.006 19.1 5.3 42 43-88 126-168 (193)
88 2pc6_A Probable acetolactate s 21.9 1.6E+02 0.0054 18.6 5.3 42 43-88 100-142 (165)
89 2a10_A CCMK4, carbon dioxide c 21.7 1.5E+02 0.005 18.1 4.4 44 48-91 24-67 (125)
90 2f1f_A Acetolactate synthase i 21.5 1.6E+02 0.0055 18.5 5.9 42 43-88 99-141 (164)
91 3roj_A D-fructose 1,6-bisphosp 21.0 2.1E+02 0.0072 20.8 5.3 41 44-85 215-267 (379)
92 3ced_A Methionine import ATP-b 20.9 1E+02 0.0035 17.5 3.1 58 25-88 22-87 (98)
93 2y9k_A Protein INVG; protein t 20.1 1.4E+02 0.0048 17.8 3.8 24 66-89 110-133 (137)
No 1
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.84 E-value=5.8e-21 Score=111.20 Aligned_cols=71 Identities=25% Similarity=0.473 Sum_probs=65.8
Q ss_pred CceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 21 ~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..+++++|.||.+.+|.||||||++|++|+++|||+|+|++. +..+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999999985 56789999999999999999999998764
No 2
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.84 E-value=1.4e-20 Score=111.65 Aligned_cols=73 Identities=27% Similarity=0.437 Sum_probs=67.3
Q ss_pred CCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-CCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-FNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 20 ~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..+.++.++.||.+.+|.||||+|++|++|+++|||+|+|++. ++..++.|+|+|+++++..|+.+|.+++.+
T Consensus 3 ~g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 3 MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999984 566789999999999999999999998765
No 3
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=111.09 Aligned_cols=72 Identities=25% Similarity=0.371 Sum_probs=66.8
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecC-CCCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN-SFNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
..++.++.||.+.+|.||||||++|++|+++|||+|+|++ .++..++.|+|+|+++++..|+.+|.+++.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 5788999999999999999999999999999999999998 45678999999999999999999999988753
No 4
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.83 E-value=1.8e-20 Score=111.14 Aligned_cols=72 Identities=28% Similarity=0.402 Sum_probs=65.7
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-CCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-FNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
..++.++.||.+.+|.||||||++|++|+++|||+|+|++. ++..++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999999984 5677999999999999999999999988754
No 5
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.83 E-value=2.2e-20 Score=109.10 Aligned_cols=70 Identities=30% Similarity=0.409 Sum_probs=64.0
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC----CCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS----FNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..+.++.||.+.+|+||||||++|++|++.|||+|+|++. +++.++.|+|+|+++++..|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999984 456789999999999999999999998764
No 6
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.81 E-value=3e-20 Score=111.83 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=68.2
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-CCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-FNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
.....++.++.||.+.+|.||||+|++|++|+++|||+|+|++. ++.+++.|+|+|+++++++|+.+|.+++.+.
T Consensus 9 ~~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 9 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp -CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999999984 5667899999999999999999999988654
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=117.73 Aligned_cols=92 Identities=37% Similarity=0.626 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhcccCCCCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC--CCC-CceEEEEEcCHHH
Q psy2768 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS--FNE-EETNVHIVGSFFS 78 (96)
Q Consensus 2 A~~~I~~k~~e~~~~~~~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~-~~~~v~I~G~~~~ 78 (96)
|+.+|++.|.+.....+......+.++.||.+++|+||||||++|++|++.|||+|+|++. |+. .++.|+|+|++++
T Consensus 63 A~~~I~~~~~e~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 63 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHHHHHHHTTSSCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHH
T ss_pred HHHHHHHHHhcccccccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHH
Confidence 6788999999885544555667889999999999999999999999999999999999874 343 3458999999999
Q ss_pred HHHHHHHHhHHhcCC
Q psy2768 79 VQETLKGCPNIVDQP 93 (96)
Q Consensus 79 v~~A~~~I~~~i~~~ 93 (96)
+..|+.+|.+++++.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 8
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.80 E-value=5.8e-20 Score=110.03 Aligned_cols=70 Identities=30% Similarity=0.409 Sum_probs=64.3
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC----CCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS----FNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..+.++.||.+.+|+||||||++|++|+++|||+|+|++. +++.++.|+|+|+++++..|+.+|.+++.+
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999984 466789999999999999999999998764
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=105.98 Aligned_cols=74 Identities=23% Similarity=0.472 Sum_probs=66.2
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC---CCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS---FNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
.+....+.++.||.+.+|+||||||++||+|+++|||+|+|++. +...++.|+|+|+++++..|+.+|.+++.+
T Consensus 9 ~g~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 9 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSCSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 34557889999999999999999999999999999999999984 245789999999999999999999998753
No 10
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.80 E-value=1.4e-19 Score=109.45 Aligned_cols=74 Identities=28% Similarity=0.410 Sum_probs=67.5
Q ss_pred CCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-CCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-FNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 20 ~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|++. ++..++.|+|+|+++++.+|+.+|.+++++.
T Consensus 11 ~~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 11 QRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999985 4567899999999999999999999987654
No 11
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=7.3e-19 Score=109.02 Aligned_cols=70 Identities=20% Similarity=0.454 Sum_probs=64.1
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCC----CCCceEEEEEcCHHHHHHHHHHHhHHhcCCC
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF----NEEETNVHIVGSFFSVQETLKGCPNIVDQPS 94 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~----~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 94 (96)
+.+|.||.+++|+||||+|++||+|+++|||+|+|++.. +..++.|+|+|+++++.+|+.+|.+++.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999852 3467999999999999999999999987753
No 12
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.78 E-value=4.8e-19 Score=107.52 Aligned_cols=77 Identities=21% Similarity=0.407 Sum_probs=69.0
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCC---CCCceEEEEEcCHHHHHHHHHHHhHHhcCCCC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF---NEEETNVHIVGSFFSVQETLKGCPNIVDQPSI 95 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 95 (96)
.....++.+|.||.+++|+||||+|++||+|+++|||+|+|++.. ...++.|+|+|+++++..|+.+|.+++.++..
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 89 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGS 89 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCSS
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 345678999999999999999999999999999999999999842 34689999999999999999999999988653
No 13
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=110.39 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=63.7
Q ss_pred CceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-CCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-FNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 21 ~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
....++++.||.+++|+||||+|++||+|+++|||+|+|+++ ++..++.|+|+|+++++++|+.+|++++.+.
T Consensus 8 ~~~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 8 RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp ----CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 345688999999999999999999999999999999999864 4557899999999999999999999988654
No 14
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.78 E-value=1e-18 Score=107.78 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=66.7
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCC---CCceEEEEEcCHHHHHHHHHHHhHHhc
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN---EEETNVHIVGSFFSVQETLKGCPNIVD 91 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~---~~~~~v~I~G~~~~v~~A~~~I~~~i~ 91 (96)
+...+.+.+|.||.+++|.||||||++|++|+++|||+|+|++... ..++.|+|+|+++++.+|+.+|.+++.
T Consensus 10 s~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 10 TENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp SSSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999998432 258999999999999999999999875
No 15
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=106.39 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=64.2
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
......+.++.||.+++|.||||+|++||+|+++|||+|+|++.. .++.++|+|+++++++|+.+|.+++..
T Consensus 5 ~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 5 SSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 344678999999999999999999999999999999999999633 268899999999999999999997653
No 16
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=114.18 Aligned_cols=91 Identities=32% Similarity=0.446 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHhcccCC-----CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecC--CCCCCceEEEEEc
Q psy2768 2 AQYLIFEKMREEGLFAG-----ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN--SFNEEETNVHIVG 74 (96)
Q Consensus 2 A~~~I~~k~~e~~~~~~-----~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~--~~~~~~~~v~I~G 74 (96)
|+.+|.++|.++...+. ....+.+.++.||.+++|+||||||++|++|++.|||+|+|++ .|+..++.|+|+|
T Consensus 62 A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G 141 (160)
T 2jzx_A 62 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 141 (160)
T ss_dssp HHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE
T ss_pred HHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc
Confidence 67889999988743211 2345789999999999999999999999999999999999987 3567789999999
Q ss_pred CHHHHHHHHHHHhHHhcC
Q psy2768 75 SFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 75 ~~~~v~~A~~~I~~~i~~ 92 (96)
+++++..|+.+|.+++.+
T Consensus 142 ~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 142 IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999997643
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.77 E-value=9.4e-19 Score=101.31 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=62.1
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHh
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIV 90 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 90 (96)
...+.++.||.+++|.|||+||++|++|+++|||+|+|+++. ..++.|+|+|+++++++|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999854 35789999999999999999999875
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.76 E-value=6.2e-19 Score=107.37 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=67.2
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
.....++.++.||.+++|.|||+||++|++|+++|||+|+|++..+.+++.|+|+|++++++.|+.+|..+++++
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999865445679999999999999999999987653
No 19
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.75 E-value=2.4e-18 Score=105.10 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=64.3
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCC--CCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..++.+|.||.+++|.||||||++|++|+++|||+|+|++.. +..++.|+|+|+++++..|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999853 33678999999999999999999998754
No 20
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.74 E-value=3.3e-18 Score=103.84 Aligned_cols=71 Identities=17% Similarity=0.366 Sum_probs=64.1
Q ss_pred CceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 21 ~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
...++.++.||.+.+|.|||+||++||+|+++|||+|+|++.. ..++.|+|+|+++++.+|+.+|..++.+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999999999999999999743 2357999999999999999999998764
No 21
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.72 E-value=5.8e-18 Score=104.58 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=65.8
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
+...+.+.+|.||.+++|.|||+||++|++|+++|||+|+|++... ..+.|+|+|++++++.|+.+|..++++
T Consensus 12 ~~~ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 12 EALVPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-QSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CCSSCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-TCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HhhCCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-CcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4566899999999999999999999999999999999999998533 346999999999999999999998765
No 22
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=109.80 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhcccC---C---CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-CCCCceEEEEEc
Q psy2768 2 AQYLIFEKMREEGLFA---G---ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-FNEEETNVHIVG 74 (96)
Q Consensus 2 A~~~I~~k~~e~~~~~---~---~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~~~~v~I~G 74 (96)
|+.+|.+.+.+..... . ......+.++.||.+++|+||||+|++|++|+++|||+|+|++. ++..++.|+|+|
T Consensus 63 A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G 142 (164)
T 2jvz_A 63 ACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG 142 (164)
T ss_dssp HHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEES
T ss_pred HHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEc
Confidence 6778888887653211 1 11113568899999999999999999999999999999999874 344579999999
Q ss_pred CHHHHHHHHHHHhHHhcCC
Q psy2768 75 SFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 75 ~~~~v~~A~~~I~~~i~~~ 93 (96)
+++++..|+.+|.++++++
T Consensus 143 ~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 143 PPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988754
No 23
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.72 E-value=1.9e-17 Score=109.81 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcccC--------------CCCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCC---C
Q psy2768 2 AQYLIFEKMREEGLFA--------------GADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF---N 64 (96)
Q Consensus 2 A~~~I~~k~~e~~~~~--------------~~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~ 64 (96)
|..+|.+++.+..... .......+.++.||.+++|+||||+|++|++|++.|||+|+|++.+ +
T Consensus 68 A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~ 147 (178)
T 2anr_A 68 VHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN 147 (178)
T ss_dssp HHHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----
T ss_pred HHHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC
Confidence 5677777776642110 0122357899999999999999999999999999999999998753 4
Q ss_pred CCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 65 EEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 65 ~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
..++.|+|+|+++++..|+.+|.+++.+.
T Consensus 148 ~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 148 LQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred CCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999977654
No 24
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.71 E-value=7.3e-17 Score=106.72 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=61.6
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCC----CCCceEEEEEcCHHHHHHHHHHHhHHh
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF----NEEETNVHIVGSFFSVQETLKGCPNIV 90 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~----~~~~~~v~I~G~~~~v~~A~~~I~~~i 90 (96)
..+.++.||.+++|+||||+|++|++|++.|||+|+|++.. +..++.|+|+|+++++..|+.+|.++|
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999998742 356899999999999999999999864
No 25
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=104.48 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=64.4
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC--CCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS--FNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
+-+++|.||.+.+|.||||+|++|++|+++|||+|+|++. ++..++.|+|+|+++++..|+.+|.+++.+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e 73 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKE 73 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4588999999999999999999999999999999999983 577899999999999999999999986653
No 26
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=103.40 Aligned_cols=70 Identities=24% Similarity=0.498 Sum_probs=63.8
Q ss_pred eEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC---CCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS---FNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 24 ~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
.+.+|.||.+.+|.||||+|++|++|+++|||+|++++. ++..++.|+|+|+++++..|+.+|.+++.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRER 74 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999763 3456899999999999999999999988754
No 27
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.67 E-value=1.8e-16 Score=105.05 Aligned_cols=72 Identities=29% Similarity=0.431 Sum_probs=65.8
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC----CCCCceEEEEEcCHHHHHHHHHHHhHHhcCC
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS----FNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 93 (96)
..++++|.||.+.+|.||||+|++|++|+++|||+|+|++. ++..+|.|+|+|+++++.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999873 4578899999999999999999999987653
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.66 E-value=1.7e-16 Score=104.95 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=64.0
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecC-CCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN-SFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..+++|.||.+.+|.||||+|++|++|+++|||+|+|++ .++..++.|+|+|+++++.+|+.+|.+++.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRS 72 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999986 4566789999999999999999999997754
No 29
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=102.70 Aligned_cols=70 Identities=26% Similarity=0.472 Sum_probs=64.0
Q ss_pred CceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhc
Q psy2768 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVD 91 (96)
Q Consensus 21 ~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 91 (96)
..+++++|.||.+.+|.||||||++|++|+++|||+|+|++. +..++.|+|+|+++++.+|+.+|.+++.
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLAGPTNAIFKAFAMIIDKLE 71 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-TTTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-CCCceEEEEEeCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999985 4568999999999999999999988654
No 30
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.63 E-value=1.9e-16 Score=96.32 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=66.3
Q ss_pred CCCceeEEEEEeecCccceeeccchhHHHHHHHHh-CCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcCCC
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRST-GSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQPS 94 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~t-g~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 94 (96)
.-...++..|.||.++++.|||+||++|++|+++| ||+|+|++. +...+.|+|+|+.+++++|+.+|..++.++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999 999999974 3446789999999999999999999887543
No 31
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.58 E-value=3.7e-15 Score=91.67 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=60.4
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHH-hCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRS-TGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~-tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..+.++.||..+++.|||++|++|++|+++ ++++|++|+ .++.|+|.|+++.|.+|+..|..++++
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----~~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----GEDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----SSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----CCCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 599999997 357999999999999999999988753
No 32
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.54 E-value=9.7e-15 Score=94.54 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=59.1
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHhCC-eEEecCCCCC----Cc--eEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGS-MIKLPNSFNE----EE--TNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~-~I~i~~~~~~----~~--~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..++.||.+++|.+|||+|.+|+.+++.||+ +|+|+..++. .+ ..|+|+|++++++.|+.+|...+++
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999997 9999873221 22 3589999999999999999998865
No 33
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=1.6e-14 Score=87.12 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCceeEEEEEeecCccceeeccchhHHHHHHHHhCCe-EEecCCCCCCceEEEEEc-CHHHHHHHHHHHhHHhcC
Q psy2768 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSM-IKLPNSFNEEETNVHIVG-SFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 20 ~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~-I~i~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~ 92 (96)
-..++...|.||.+.+|.+||+||++|++|+++||++ |+|.+. ++.|+|+| +.+++++|+.+|..+.+.
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----dG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----TGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----TTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----CCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 3467899999999999999999999999999999998 999852 48999999 789999999999887554
No 34
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.42 E-value=1.9e-13 Score=100.12 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=63.5
Q ss_pred CCCceeEEEEEeecCccceeeccch--hHHHHHHHHhCCeEEecCCC--C----CCceEEEEEcCHHHHHHHHHHHhHH
Q psy2768 19 ADEVRLTIELVVPSSQVGRIIGKGG--QNVRELQRSTGSMIKLPNSF--N----EEETNVHIVGSFFSVQETLKGCPNI 89 (96)
Q Consensus 19 ~~~~~~~~~~~ip~~~vg~iIGkgG--~~Ik~i~~~tg~~I~i~~~~--~----~~~~~v~I~G~~~~v~~A~~~I~~~ 89 (96)
.....+|+++.||..+++.|||||| ++|++|+++|||+|++|+.. . .....|+|+|.+++|++|+.+|.++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 4567999999999999999999999 99999999999999999843 1 3446799999999999999999875
No 35
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.36 E-value=9.4e-13 Score=90.48 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcc-----cCC---CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEc
Q psy2768 3 QYLIFEKMREEGL-----FAG---ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVG 74 (96)
Q Consensus 3 ~~~I~~k~~e~~~-----~~~---~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G 74 (96)
+.+|+.|++.+.- .+. +...+.+.++.||.+.+|.|||+||.+|+.|+++|||+|+++.. ++.|+|.|
T Consensus 5 ~~~~~~k~~~~~~~~~~~~pr~e~s~~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----~g~V~I~~ 80 (219)
T 2e3u_A 5 FEKLMKKFENVNKDGEIVEDEDEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE----TGEVWITS 80 (219)
T ss_dssp ----------------------------CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT----TCEEEEEE
T ss_pred HHHHHHHHHhhcccCCCCCCccccCCCCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC----CCEEEEec
Confidence 5678888887421 111 45677888999999999999999999999999999999999843 56788887
Q ss_pred C-----HHHHHHHHHHHhHHhc
Q psy2768 75 S-----FFSVQETLKGCPNIVD 91 (96)
Q Consensus 75 ~-----~~~v~~A~~~I~~~i~ 91 (96)
+ ++++.+|+.+|..+..
T Consensus 81 ~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 81 TKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 5 6999999999999873
No 36
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.35 E-value=3.1e-12 Score=93.71 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcccCCCCCceeEEEEEeecCccceeeccch--hHHHHHHHHhCCeEEecCCCC-----CCceEEEEEcCH
Q psy2768 4 YLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGG--QNVRELQRSTGSMIKLPNSFN-----EEETNVHIVGSF 76 (96)
Q Consensus 4 ~~I~~k~~e~~~~~~~~~~~~~~~~~ip~~~vg~iIGkgG--~~Ik~i~~~tg~~I~i~~~~~-----~~~~~v~I~G~~ 76 (96)
..+++++.++ .......++.++.||..+++.|||++| ..|++|+++|||+|.+|+..+ .....|+|+|+.
T Consensus 169 ~~Ll~~l~~~---e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~ 245 (376)
T 3n89_A 169 KRLNEILFRE---SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI 245 (376)
T ss_dssp HHHHHHHCC-----CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH
T ss_pred HHHHHHHHhh---hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH
Confidence 3455555443 123456899999999999999999999 566999999999999997432 235689999999
Q ss_pred HHHHHHHHHHhHHh
Q psy2768 77 FSVQETLKGCPNIV 90 (96)
Q Consensus 77 ~~v~~A~~~I~~~i 90 (96)
++|..|+..|.++|
T Consensus 246 e~V~~Ark~I~~lL 259 (376)
T 3n89_A 246 DNVLKARRYIMDLL 259 (376)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999875
No 37
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=2.9e-12 Score=81.90 Aligned_cols=71 Identities=18% Similarity=0.401 Sum_probs=60.7
Q ss_pred ceeEEEEEeecC------ccceeeccchhHHHHHHHHhCCeEEecCCC-----------------CCCceEEEEEc-CHH
Q psy2768 22 VRLTIELVVPSS------QVGRIIGKGGQNVRELQRSTGSMIKLPNSF-----------------NEEETNVHIVG-SFF 77 (96)
Q Consensus 22 ~~~~~~~~ip~~------~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~-----------------~~~~~~v~I~G-~~~ 77 (96)
..++.++.||.+ ++|.|||++|.+||+|+++|||+|.|.... ...+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468899999988 889999999999999999999999997521 11256788988 569
Q ss_pred HHHHHHHHHhHHhcC
Q psy2768 78 SVQETLKGCPNIVDQ 92 (96)
Q Consensus 78 ~v~~A~~~I~~~i~~ 92 (96)
.+.+|+.+|..++..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999875
No 38
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.27 E-value=6.3e-12 Score=97.21 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcccCC---CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcC-HHH
Q psy2768 3 QYLIFEKMREEGLFAG---ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS-FFS 78 (96)
Q Consensus 3 ~~~I~~k~~e~~~~~~---~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~-~~~ 78 (96)
...|++.|++....+. +...+....+.||.+.+|.+||+||++||.|+++|||+|+|.+ +..|.|.|+ +++
T Consensus 543 ~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----~G~V~I~~~~~~~ 617 (630)
T 3u1k_A 543 KKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-----EETFSVFAPTPSA 617 (630)
T ss_dssp HHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----SSEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----CcEEEEEeCCHHH
Confidence 4568888888765443 6777999999999999999999999999999999999999985 588999986 589
Q ss_pred HHHHHHHHhHHh
Q psy2768 79 VQETLKGCPNIV 90 (96)
Q Consensus 79 v~~A~~~I~~~i 90 (96)
..+|+.+|..++
T Consensus 618 ~~~A~~~I~~i~ 629 (630)
T 3u1k_A 618 MHEARDFITEIC 629 (630)
T ss_dssp HHHHHHHTTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 39
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=76.30 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCceeEEEEEeecC-------ccceeeccchhHHHHHHHHhCCeEEecCCC-----------CCCceEEEEEc-CHHHHH
Q psy2768 20 DEVRLTIELVVPSS-------QVGRIIGKGGQNVRELQRSTGSMIKLPNSF-----------NEEETNVHIVG-SFFSVQ 80 (96)
Q Consensus 20 ~~~~~~~~~~ip~~-------~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~-----------~~~~~~v~I~G-~~~~v~ 80 (96)
.-..++.++.||.+ ++|.|||++|.+||+|+++|||+|.|.... ...+-.|.|++ ++++++
T Consensus 8 ~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~ 87 (119)
T 2yqr_A 8 GMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLA 87 (119)
T ss_dssp CCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHH
T ss_pred CeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHH
Confidence 33467788888875 789999999999999999999999997421 11345677776 579999
Q ss_pred HHHHHHhHHhcC
Q psy2768 81 ETLKGCPNIVDQ 92 (96)
Q Consensus 81 ~A~~~I~~~i~~ 92 (96)
+|+.+|.+++..
T Consensus 88 ~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 88 AAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999998764
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.21 E-value=2.6e-11 Score=83.26 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=49.4
Q ss_pred ccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 34 QVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 34 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
.+|+||||+|++|+.|++.|||+|.|++ +.|+|.|++++++.|+.+|.+++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999984 5699999999999999999998855
No 41
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.09 E-value=2.1e-10 Score=73.96 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=54.3
Q ss_pred eEEEEEeecCc------cceeeccchhHHHHHHHHhCCeEEecCCCC-------------------CCceEEEEEcC-HH
Q psy2768 24 LTIELVVPSSQ------VGRIIGKGGQNVRELQRSTGSMIKLPNSFN-------------------EEETNVHIVGS-FF 77 (96)
Q Consensus 24 ~~~~~~ip~~~------vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-------------------~~~~~v~I~G~-~~ 77 (96)
++.++.||.+. +|.|||++|.++|+|+++|||+|.|..... ..+--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46678888655 899999999999999999999999986321 01126778884 33
Q ss_pred -----HHHHHHHHHhHHhcC
Q psy2768 78 -----SVQETLKGCPNIVDQ 92 (96)
Q Consensus 78 -----~v~~A~~~I~~~i~~ 92 (96)
.+..|+.+|..++..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999998764
No 42
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=99.05 E-value=6e-10 Score=71.25 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=62.2
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhc
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVD 91 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 91 (96)
.-.+.|.+....++.|+|++|+.|+.|+..|++.|++.....+.+..|+|+|++..-..|+.+|..+.+
T Consensus 55 ~dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 55 EDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp SSCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999655678999999999999999999988753
No 43
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.01 E-value=2.8e-10 Score=73.43 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=48.8
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHH
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGC 86 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I 86 (96)
..++.+|.||.+.+|++||++|++|+.|++++| |++....+..+..+...++|+.+..|+.++
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~~~~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDEDTCTFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCCchheeeccCCHHHHHHHHHhh
Confidence 367899999999999999999999999999999 555443233455555566899999987643
No 44
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.00 E-value=2.5e-10 Score=76.96 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=49.3
Q ss_pred ccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 34 QVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 34 ~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..|+||||+|++++.|+..|||+|.|++ ..|.|.|++++++.|...|++++..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGE------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECS------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcC------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999985 4899999999999999999998764
No 45
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.00 E-value=1.1e-10 Score=91.34 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcccCC---CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcC-HHH
Q psy2768 3 QYLIFEKMREEGLFAG---ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS-FFS 78 (96)
Q Consensus 3 ~~~I~~k~~e~~~~~~---~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~-~~~ 78 (96)
...|++.|++....+. +...+....+.||.+.++.+||+||.+||+|+++||++|+|.+ +..|.|.+. .++
T Consensus 546 ~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-----dG~v~I~~~~~~~ 620 (726)
T 4aid_A 546 RAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-----DGVVKVSASDGAK 620 (726)
T ss_dssp HHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------CCSCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----CceEEEEeCCHHH
Confidence 4568888888765332 5677889999999999999999999999999999999999985 577888875 699
Q ss_pred HHHHHHHHhHHhcCCCC
Q psy2768 79 VQETLKGCPNIVDQPSI 95 (96)
Q Consensus 79 v~~A~~~I~~~i~~~~~ 95 (96)
.++|+.+|..++.++.+
T Consensus 621 ~~~A~~~i~~i~~~~~v 637 (726)
T 4aid_A 621 IKAAIDWIKSITDEAEV 637 (726)
T ss_dssp HHHHHHC----------
T ss_pred HHHHHHHHHHHhhhhcC
Confidence 99999999998876543
No 46
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.88 E-value=3.4e-09 Score=71.42 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=56.9
Q ss_pred EEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEE-----cCHHHHHHHHHHHhHHhcC
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIV-----GSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~i~~ 92 (96)
..+.||.+.+|.|||++|++++.|++.+|++|.++.. ++.++|. |++.++.+|..+|..+...
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE----NSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----TTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999853 6778888 9999999999999876653
No 47
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.41 E-value=7e-08 Score=75.72 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcccCC---CCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCH-HH
Q psy2768 3 QYLIFEKMREEGLFAG---ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSF-FS 78 (96)
Q Consensus 3 ~~~I~~k~~e~~~~~~---~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~-~~ 78 (96)
...|++.|++....+. +...+....+.||.+.++.+||+||.+|++|.++||+.|+|.. +..+.|.+.. ..
T Consensus 536 ~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----dg~v~I~~~~~~~ 610 (723)
T 3cdi_A 536 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----DGTVKIAATDGEK 610 (723)
T ss_dssp HHHHHHHHHHHCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----CccEEEecCCHHH
Confidence 3467888888654332 5677889999999999999999999999999999999999985 5678887754 78
Q ss_pred HHHHHHHHhHHhcCCC
Q psy2768 79 VQETLKGCPNIVDQPS 94 (96)
Q Consensus 79 v~~A~~~I~~~i~~~~ 94 (96)
..+|..+|..+..++.
T Consensus 611 ~~~a~~~i~~i~~~~~ 626 (723)
T 3cdi_A 611 AKHAIRRIEEITAEIE 626 (723)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHhhhhh
Confidence 8888888887765543
No 48
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.06 E-value=1.5e-07 Score=74.20 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcccC--CCCCceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcC-HHHH
Q psy2768 3 QYLIFEKMREEGLFA--GADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS-FFSV 79 (96)
Q Consensus 3 ~~~I~~k~~e~~~~~--~~~~~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~-~~~v 79 (96)
...|++.|++....+ .+...+....+.||.+.+|.+||+||.+||+|+++||+.|+|.+ +..|.|++. ....
T Consensus 575 ~~~I~~~m~~al~~~~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----dG~v~Is~~~~~~~ 649 (757)
T 1e3p_A 575 RLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----DGTIYIGAADGPAA 649 (757)
T ss_dssp HHHHHHHHHHHCSSCCCCCTTSCBCCCC------------------CTTCCCCCSCC-------------CCCBSSHHHH
T ss_pred HHHHHHHHHHHhcccccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----CceEEEecCCHHHH
Confidence 456788888765322 25566778889999999999999999999999999999999985 567788764 4777
Q ss_pred HHHHHHHhHHh
Q psy2768 80 QETLKGCPNIV 90 (96)
Q Consensus 80 ~~A~~~I~~~i 90 (96)
+.|..+|..+.
T Consensus 650 ~~a~~~i~~i~ 660 (757)
T 1e3p_A 650 EAARATINGIA 660 (757)
T ss_dssp CC---------
T ss_pred HHHHHHHHHhc
Confidence 78877777765
No 49
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.58 E-value=0.0018 Score=41.56 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=35.5
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecC
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~ 61 (96)
..-.+.+.|+...+|+.||++|++++.++++.|-+|+|-.
T Consensus 34 ~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 34 ENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp GGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CCCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 3456788999999999999999999999999999998843
No 50
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=95.51 E-value=0.0027 Score=40.77 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=35.2
Q ss_pred ceeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEec
Q psy2768 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLP 60 (96)
Q Consensus 22 ~~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~ 60 (96)
......+.||.+..+..|||+|.+++-..+-||.+|+|.
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 456778899999999999999999999999999988775
No 51
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.37 E-value=0.013 Score=40.76 Aligned_cols=39 Identities=38% Similarity=0.467 Sum_probs=36.0
Q ss_pred eEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC
Q psy2768 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62 (96)
Q Consensus 24 ~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~ 62 (96)
....+.||.++.+.-|||+|.+++--.+-||.+|+|...
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 467899999999999999999999999999999999763
No 52
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.49 E-value=0.028 Score=41.03 Aligned_cols=39 Identities=38% Similarity=0.467 Sum_probs=36.0
Q ss_pred eEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC
Q psy2768 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62 (96)
Q Consensus 24 ~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~ 62 (96)
....+.||.+..+..|||+|.+++-..+-||.+|+|...
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 467899999999999999999999999999999999764
No 53
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.45 E-value=0.03 Score=40.54 Aligned_cols=39 Identities=36% Similarity=0.528 Sum_probs=35.9
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~ 61 (96)
.....+.||.++.+.-|||+|.+++--.+-||.+|+|..
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 456889999999999999999999999999999999864
No 54
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=92.15 E-value=0.086 Score=33.97 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=25.1
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHh
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRST 53 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~t 53 (96)
++.+.+-.+..|.+|||.|.+++.||--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 46677788899999999999999998766
No 55
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=91.72 E-value=0.089 Score=31.09 Aligned_cols=28 Identities=21% Similarity=0.568 Sum_probs=22.3
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHH
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
..++.|....-|.+||++|+.|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4567777778899999999999877553
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=91.05 E-value=0.63 Score=31.56 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=46.0
Q ss_pred EEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHH
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNI 89 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 89 (96)
.-+.++...+.+++|+++..+..|.+.+++.|-+-. +..|-|.++......+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----CcEEEEeCCchhHHHHHHHHHHH
Confidence 345788888889999999999999999999999976 46777888876555555555443
No 57
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=87.06 E-value=0.23 Score=34.51 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=25.5
Q ss_pred CccceeeccchhHHHHH-HHHhCCeEEecC
Q psy2768 33 SQVGRIIGKGGQNVREL-QRSTGSMIKLPN 61 (96)
Q Consensus 33 ~~vg~iIGkgG~~Ik~i-~~~tg~~I~i~~ 61 (96)
+-+|+.||++|++|+.+ ++..|-+|+|-.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 45799999999999999 888899999943
No 58
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=85.41 E-value=4.1 Score=27.51 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=46.1
Q ss_pred EEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEc-CHHHHHHHHHHHhHH
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVG-SFFSVQETLKGCPNI 89 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 89 (96)
+-+.++...+.+++|++|..+..|.+.+++.|-+-. +..|-|.+ +++....+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----CCEEEEecCCHHHHHHHHHHHHHH
Confidence 456788889999999999999999989999999986 46677775 556666555555554
No 59
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=84.23 E-value=0.4 Score=34.96 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.9
Q ss_pred CccceeeccchhHHHHHHHHh-CCeEEecC
Q psy2768 33 SQVGRIIGKGGQNVRELQRST-GSMIKLPN 61 (96)
Q Consensus 33 ~~vg~iIGkgG~~Ik~i~~~t-g~~I~i~~ 61 (96)
+-+|+.||++|++|+.|.++. |-+|+|-.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 567999999999999999998 99999843
No 60
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=82.95 E-value=0.93 Score=31.47 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=28.2
Q ss_pred ceeEEEEEeec-CccceeeccchhHHHHH--------HHHhCCeEEec
Q psy2768 22 VRLTIELVVPS-SQVGRIIGKGGQNVREL--------QRSTGSMIKLP 60 (96)
Q Consensus 22 ~~~~~~~~ip~-~~vg~iIGkgG~~Ik~i--------~~~tg~~I~i~ 60 (96)
..+...+.|.. ++-+.|||++|+.||+| ++.+|++|.+.
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 35666777775 46699999999999865 44567776653
No 61
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=81.27 E-value=0.67 Score=31.59 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=36.1
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCC-CceEEEEEcCHHHHHHHHHH
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNE-EETNVHIVGSFFSVQETLKG 85 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~-~~~~v~I~G~~~~v~~A~~~ 85 (96)
.+.+.+..+..|.+|||.|.+++.||--+..-++-. .+. ..-.+-+.|-.+.-...+..
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~--~~~~~rv~LDi~~YR~rR~e~L~~ 152 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKS--SSDYIRVKLDTENYRERRKETLET 152 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHT--CSSCCEEEEESTTHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhc--CCCceEEEEecchHHHHHHHHHHH
Confidence 345556677899999999999999998876444322 211 12334444544554444433
No 62
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=79.87 E-value=0.74 Score=31.74 Aligned_cols=28 Identities=18% Similarity=0.503 Sum_probs=22.4
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHH
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
..++.|....-|.+||++|+.|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567777788899999999999877543
No 63
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.76 E-value=0.69 Score=31.25 Aligned_cols=26 Identities=35% Similarity=0.797 Sum_probs=21.0
Q ss_pred EEEEeecCccceeeccchhHHHHHHH
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQR 51 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~ 51 (96)
.++.|....-|.+||++|+.|++|+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHH
Confidence 45666777789999999999988754
No 64
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=78.66 E-value=1 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=23.6
Q ss_pred eEEEEEeecCccceeeccchhHHHHHHHH
Q psy2768 24 LTIELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 24 ~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
...++.|-...-|.+||++|+.|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45667777788899999999999887664
No 65
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=76.54 E-value=0.74 Score=31.46 Aligned_cols=30 Identities=20% Similarity=0.572 Sum_probs=23.9
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHH
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
+...++.|....-|.+||++|+.|++|+..
T Consensus 43 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 43 PMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TTEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CCcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 345677788888899999999999887543
No 66
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=74.32 E-value=0.92 Score=31.31 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=24.0
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHH
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
+...++.|....-|.+||++|+.|++|+..
T Consensus 43 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 43 PTRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TTEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CCcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 345567777788899999999999988764
No 67
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=73.74 E-value=2.7 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.390 Sum_probs=29.6
Q ss_pred eeEEEEEeecCccceeeccchhHHHHH-HHHh--------CC---eEEecC
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVREL-QRST--------GS---MIKLPN 61 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i-~~~t--------g~---~I~i~~ 61 (96)
.+...+.||.+..|.+|| .+|+++ ++++ |+ .+.+.+
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 466789999999999999 689995 9999 87 566654
No 68
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=73.38 E-value=0.8 Score=30.82 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=24.3
Q ss_pred EEEEeecCccceeeccchhHHHHHH----HHhCCeEEe
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQ----RSTGSMIKL 59 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~----~~tg~~I~i 59 (96)
.++.|-...-|.+||++|+.|++|+ +.++..+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 4556666777999999999998765 456655443
No 69
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=72.50 E-value=0.75 Score=32.01 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=24.4
Q ss_pred EEEEee-cCccceeeccchhHHHHH--------HHHhCCeEEec
Q psy2768 26 IELVVP-SSQVGRIIGKGGQNVREL--------QRSTGSMIKLP 60 (96)
Q Consensus 26 ~~~~ip-~~~vg~iIGkgG~~Ik~i--------~~~tg~~I~i~ 60 (96)
..+.|. .++.+.|||++|+.||+| ++-.|+++.+.
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 344554 466699999999999865 45566766653
No 70
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=71.93 E-value=4.6 Score=26.22 Aligned_cols=55 Identities=5% Similarity=-0.017 Sum_probs=40.7
Q ss_pred EEEeecCccceeeccchh-HHHHHHHHhCCeEEecCCCCCCceEEEEEc-CHHHHHHHHHHH
Q psy2768 27 ELVVPSSQVGRIIGKGGQ-NVRELQRSTGSMIKLPNSFNEEETNVHIVG-SFFSVQETLKGC 86 (96)
Q Consensus 27 ~~~ip~~~vg~iIGkgG~-~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G-~~~~v~~A~~~I 86 (96)
-+.||...+.+++|+.|. .++.|.+.+++.|-+-. +..|-|.+ ++.....+...|
T Consensus 94 l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~-----NG~IWi~~~~~~~~~~v~~aI 150 (175)
T 2ja9_A 94 IIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL-----NGKIWVKCEELSNTLACYRTI 150 (175)
T ss_dssp EEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET-----TTEEEEECSSHHHHHHHHHHH
T ss_pred EEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC-----CcEEEEecCCHHHHHHHHHHH
Confidence 478999999999998888 89999989999999987 35566765 444433333333
No 71
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=71.35 E-value=0.97 Score=30.99 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=23.0
Q ss_pred EEEEeecCccceeeccchhHHHHHHH----HhCCe
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQR----STGSM 56 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~----~tg~~ 56 (96)
+++.|-...-|.+||++|+.|++|+. .++..
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~ 98 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVP 98 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCc
Confidence 45566667789999999999987754 45543
No 72
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=69.64 E-value=1.6 Score=30.06 Aligned_cols=27 Identities=30% Similarity=0.682 Sum_probs=20.8
Q ss_pred EEEEeecCccceeeccchhHHHHHHHH
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
+++.|-...-|.+||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 345556677799999999999887654
No 73
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=68.64 E-value=1.2 Score=30.16 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEeecCccceeeccchhHHHHHHHH
Q psy2768 26 IELVVPSSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 26 ~~~~ip~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
+++.|....-|.+||++|+.|++|+..
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 345556666789999999999887653
No 74
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=67.71 E-value=6.1 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred eeEEEEEee-cCccceeeccchhHHHHHHHH
Q psy2768 23 RLTIELVVP-SSQVGRIIGKGGQNVRELQRS 52 (96)
Q Consensus 23 ~~~~~~~ip-~~~vg~iIGkgG~~Ik~i~~~ 52 (96)
.+...+.|. .++-+.+||++|+.||+|...
T Consensus 230 ~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ 260 (301)
T 1ega_A 230 DINGLILVEREGQKKMVIGNKGAKIKTIGIE 260 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEEEECCceEEEECCCcHHHHHHHHH
Confidence 344556664 456699999999999876543
No 75
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=63.62 E-value=2.6 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.554 Sum_probs=25.2
Q ss_pred CccceeeccchhHHHHHHHHh-CCeEEecC
Q psy2768 33 SQVGRIIGKGGQNVRELQRST-GSMIKLPN 61 (96)
Q Consensus 33 ~~vg~iIGkgG~~Ik~i~~~t-g~~I~i~~ 61 (96)
+-+|+.+|.+|++|+.+.++. |-+|++-.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 457999999999999999888 89998843
No 76
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=50.82 E-value=4.2 Score=27.89 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=27.8
Q ss_pred EEEeecCccceeeccchhHHHHHHHHhCCeEEecC
Q psy2768 27 ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61 (96)
Q Consensus 27 ~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~ 61 (96)
-+.++...+.+++|+++..+..|.+.+++.|-+-.
T Consensus 158 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~ 192 (251)
T 2je6_I 158 VIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN 192 (251)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTTC---CEECT
T ss_pred EEEECHHHhHHHhcCcchHHHHhcccCCeEEEEEC
Confidence 45778888899999999999999989999998876
No 77
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=47.68 E-value=35 Score=19.82 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=42.4
Q ss_pred eeEEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-----CCC--CceEEEEEcCHHHHHHHHHHHhH
Q psy2768 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-----FNE--EETNVHIVGSFFSVQETLKGCPN 88 (96)
Q Consensus 23 ~~~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~--~~~~v~I~G~~~~v~~A~~~I~~ 88 (96)
...+++..+.+.+ ..--|.++-+++|..++|-.. .+. ..-.+.+.|+.+++.+|+..+.+
T Consensus 21 ~~lvrL~f~g~~~------~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 21 VPMLRLEFTGQSV------DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp EEEEEEEEEEECT------TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCcc------ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3455666555432 345899999999999998652 122 33457789999999999988776
No 78
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=46.94 E-value=61 Score=23.19 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHH----hCCeE-EecCCCCCCceEEEEEcCHHHHHHHH
Q psy2768 40 GKGGQNVRELQRS----TGSMI-KLPNSFNEEETNVHIVGSFFSVQETL 83 (96)
Q Consensus 40 GkgG~~Ik~i~~~----tg~~I-~i~~~~~~~~~~v~I~G~~~~v~~A~ 83 (96)
||.-..|..|.+. .|+++ ++..+++.+...+|+.|.++.+..|.
T Consensus 13 GR~~~vIe~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~vg~pe~v~eaa 61 (325)
T 1qd1_A 13 GKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEGA 61 (325)
T ss_dssp SSCHHHHHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEEECHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEccChHHHHHHH
Confidence 7777777777554 46665 56556667778899999998877765
No 79
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=43.99 E-value=6.4 Score=27.63 Aligned_cols=57 Identities=5% Similarity=-0.003 Sum_probs=42.6
Q ss_pred EEEeecCccceeeccchhHHHHHHHHhCCeEEecCCCCCCceEEEEEc-CHHHHHHHHHHHhH
Q psy2768 27 ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVG-SFFSVQETLKGCPN 88 (96)
Q Consensus 27 ~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~ 88 (96)
-|.||..++.+++|+.+..++.|.+.+++.|-+-. +..|-|.+ +++....+...|..
T Consensus 213 l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~-----NG~IWI~~~~~~~~~~i~~aI~~ 270 (289)
T 2nn6_G 213 LFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGM-----NGRIWVKAKTIQQTLILANILEA 270 (289)
T ss_dssp EECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEET-----TTEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEChHHhhhhhcCchhHHHHhcccCCeEEEEEC-----CcEEEEecCChhHHHHHHHHHHH
Confidence 47788889999999999999999888999999986 35566765 44554444444443
No 80
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=42.33 E-value=64 Score=24.69 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHh----CCeE-EecCCCCCCceEEEEEcCHHHHHHHH
Q psy2768 40 GKGGQNVRELQRST----GSMI-KLPNSFNEEETNVHIVGSFFSVQETL 83 (96)
Q Consensus 40 GkgG~~Ik~i~~~t----g~~I-~i~~~~~~~~~~v~I~G~~~~v~~A~ 83 (96)
||.-..|..|.+.. |+++ ++..+++.+...+|+.|.++.+..|.
T Consensus 14 gR~~~~i~~I~~a~~~~~gv~lld~~~d~~~NRtv~T~vg~p~~v~~a~ 62 (541)
T 1tt9_A 14 GNNQEVIDAISQAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEGA 62 (541)
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCCeeEEcCCcHHHHHHH
Confidence 77888887776553 6655 55556667778899999998877765
No 81
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=30.55 E-value=77 Score=17.91 Aligned_cols=58 Identities=7% Similarity=0.129 Sum_probs=41.8
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-----CCC--CceEEEEEcCHHHHHHHHHHHhH
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-----FNE--EETNVHIVGSFFSVQETLKGCPN 88 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~--~~~~v~I~G~~~~v~~A~~~I~~ 88 (96)
-+++..+.+.+ ..--|.++-+.+|..++|-.. .+. ..-.+.+.|..+++.+|+..+.+
T Consensus 25 lv~l~f~g~~~------~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (100)
T 2qsw_A 25 IVRLLFHGEQA------KLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 89 (100)
T ss_dssp EEEEEEESCSC------SSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCc------CchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 56677666543 356789999999999998662 222 33456679999999999988765
No 82
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=30.29 E-value=78 Score=17.92 Aligned_cols=58 Identities=7% Similarity=0.037 Sum_probs=42.1
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-----CCC--CceEEEEEcCHHHHHHHHHHHhH
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-----FNE--EETNVHIVGSFFSVQETLKGCPN 88 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~--~~~~v~I~G~~~~v~~A~~~I~~ 88 (96)
-+++..+.+.+ ..--|.++-+.+|..++|-.. .+. ..-.+.+.|..+++.+|+..+.+
T Consensus 25 lv~l~f~g~~~------~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATV------DAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSC------SSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCc------CchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 57777776643 356789999999999998662 122 33456679999999999988765
No 83
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, hydrolase manganese; 1.85A {Escherichia coli} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A*
Probab=25.00 E-value=1.6e+02 Score=21.12 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=30.0
Q ss_pred hHHHHHHHHhCCeEEecCC-----------CC-CCceEEEEEcCHHHHHHHHHH
Q psy2768 44 QNVRELQRSTGSMIKLPNS-----------FN-EEETNVHIVGSFFSVQETLKG 85 (96)
Q Consensus 44 ~~Ik~i~~~tg~~I~i~~~-----------~~-~~~~~v~I~G~~~~v~~A~~~ 85 (96)
.-|++||+ +|++|+.-.+ ++ .-+-.+-|-|.|+.|-.|..+
T Consensus 171 ~lI~eiR~-~GArI~li~DGDVa~ai~~~~~~sgvD~~~GiGGAPEGVlaAaAl 223 (338)
T 3big_A 171 AVIAEMQQ-LGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVI 223 (338)
T ss_dssp HHHHHHHH-HTCEEEEESSCSHHHHHHTTCTTSSCCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEeCCccHHHHHHHhcCCCCeeEEEECCCChHHHHHHHHH
Confidence 56788865 9999998652 22 345566688899999888754
No 84
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=23.71 E-value=1.2e+02 Score=17.67 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=30.3
Q ss_pred HHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhcC
Q psy2768 48 ELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQ 92 (96)
Q Consensus 48 ~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 92 (96)
..-+.+++.+---+..+.....+.++|+-.+|+.|.....+..++
T Consensus 22 ~a~KAA~V~lv~~~~~~~G~~~vii~GdVsaV~~Av~ag~~~~~~ 66 (99)
T 3cim_A 22 SMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVSAGIEAANR 66 (99)
T ss_dssp HHHHHSSEEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCcEEEEEEecCCcEEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 344555666644443333467899999999999999887765443
No 85
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=23.32 E-value=77 Score=19.24 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=38.2
Q ss_pred Cccceeeccchh-HH---HHHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhc
Q psy2768 33 SQVGRIIGKGGQ-NV---RELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVD 91 (96)
Q Consensus 33 ~~vg~iIGkgG~-~I---k~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 91 (96)
..+|.|-.+++. .| -..-+.+++.+-.-+.-. ..+.|+|+..+|+.|.....+.++
T Consensus 39 ~AIGiie~~~~~~~I~AAD~a~KAA~Vel~~~~~~~---G~vii~GdVsaV~aAvea~~~~~~ 98 (119)
T 3i96_A 39 GAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFS---GALVIYGSVGAVEEALSQTVSGLG 98 (119)
T ss_dssp SEEEEEEEESTTHHHHHHHHHHHHSSEEEEEECTTT---CEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHhhhcCcEEEEEEecc---cEEEEEECHHHHHHHHHHHHHHHh
Confidence 566777777665 22 445566677775544321 378999999999999988777553
No 86
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=22.99 E-value=7.4 Score=24.74 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=22.0
Q ss_pred CCceeEEEEEeecCccceeeccchhHH
Q psy2768 20 DEVRLTIELVVPSSQVGRIIGKGGQNV 46 (96)
Q Consensus 20 ~~~~~~~~~~ip~~~vg~iIGkgG~~I 46 (96)
...+-.+...++.+..|.+||++|..|
T Consensus 20 ~~~p~~i~~~i~~~~i~~vig~~G~~I 46 (171)
T 1y14_B 20 PRMKQYLKTKLLEEVEGSCTGKFGYIL 46 (171)
T ss_dssp TTHHHHHHHHHHHHHTTEEETTTEEEE
T ss_pred ChHHHHHHHHHHHHHcCcCcCCceEEE
Confidence 344556677889999999999999888
No 87
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=22.00 E-value=1.7e+02 Score=19.10 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhCCeE-EecCCCCCCceEEEEEcCHHHHHHHHHHHhH
Q psy2768 43 GQNVRELQRSTGSMI-KLPNSFNEEETNVHIVGSFFSVQETLKGCPN 88 (96)
Q Consensus 43 G~~Ik~i~~~tg~~I-~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 88 (96)
-..|.+|-+.+.++| ++.+ ..-.+.++|+++.+..-+.++..
T Consensus 126 r~ei~~i~~~fra~ivDv~~----~s~~iE~tG~~~ki~a~i~~l~~ 168 (193)
T 2fgc_A 126 KQEIFQLVEIFRGKIIDVSR----EGAIIEITGARSKVEAFINLLPQ 168 (193)
T ss_dssp HHHHHHHHHHTTCEEEEECS----SEEEEEEEECHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHcCCEEEEEcC----CEEEEEEcCCHHHHHHHHHHhhh
Confidence 478999999999987 5543 25778899999999988887765
No 88
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=21.93 E-value=1.6e+02 Score=18.63 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhCCeE-EecCCCCCCceEEEEEcCHHHHHHHHHHHhH
Q psy2768 43 GQNVRELQRSTGSMI-KLPNSFNEEETNVHIVGSFFSVQETLKGCPN 88 (96)
Q Consensus 43 G~~Ik~i~~~tg~~I-~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 88 (96)
-..|.++-+.++++| ++.+ ..-.+.++|+++.+..-+.++..
T Consensus 100 r~~i~~~~~~fra~ivdv~~----~~~~ie~tg~~~ki~~~~~~l~~ 142 (165)
T 2pc6_A 100 REEMKRLADIFRGNIIDVTN----ELYTIELTGTRSKLDGFLQAVDC 142 (165)
T ss_dssp HHHHHHHHHHTTCEEEEEET----TEEEEEEEECHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHcCCEEEEEcC----CEEEEEEcCCHHHHHHHHHHhhh
Confidence 367899999999987 5554 25778899999999988877765
No 89
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=21.69 E-value=1.5e+02 Score=18.10 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=31.2
Q ss_pred HHHHHhCCeEEecCCCCCCceEEEEEcCHHHHHHHHHHHhHHhc
Q psy2768 48 ELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVD 91 (96)
Q Consensus 48 ~i~~~tg~~I~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 91 (96)
..-+.+++.+---...+.....+.|+|+-.+|+.|.....+..+
T Consensus 24 aavKAAnVelv~~e~~~~G~~~vii~GDVsaV~aAveag~~~~~ 67 (125)
T 2a10_A 24 AMVKAGRITIVGYIRAGSARFTLNIRGDVQEVKTAMAAGIDAIN 67 (125)
T ss_dssp HHHHHSSCEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCcEEEEEEecCCCEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 44555667665544334456789999999999999988776544
No 90
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=21.52 E-value=1.6e+02 Score=18.54 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhCCeE-EecCCCCCCceEEEEEcCHHHHHHHHHHHhH
Q psy2768 43 GQNVRELQRSTGSMI-KLPNSFNEEETNVHIVGSFFSVQETLKGCPN 88 (96)
Q Consensus 43 G~~Ik~i~~~tg~~I-~i~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 88 (96)
-..|.++-+.++++| ++.+ ..-.+.++|+++.+..-+.++..
T Consensus 99 r~~i~~~~~~fra~ivdv~~----~~~~ie~tg~~~ki~~~~~~l~~ 141 (164)
T 2f1f_A 99 RDEVKRNTEIFRGQIIDVTP----SLYTVQLAGTSGKLDAFLASIRD 141 (164)
T ss_dssp HHHHHHHHHHTTCEEEEECS----SEEEEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECC----CEEEEEEeCCHHHHHHHHHHHHh
Confidence 367899999999987 4543 25778899999999988887765
No 91
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase; fructose-1,6-/sedoheptulose-1,7-bisphosphatase, hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB: 3rpl_A*
Probab=21.03 E-value=2.1e+02 Score=20.84 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=29.9
Q ss_pred hHHHHHHHHhCCeEEecCC-----------CCC-CceEEEEEcCHHHHHHHHHH
Q psy2768 44 QNVRELQRSTGSMIKLPNS-----------FNE-EETNVHIVGSFFSVQETLKG 85 (96)
Q Consensus 44 ~~Ik~i~~~tg~~I~i~~~-----------~~~-~~~~v~I~G~~~~v~~A~~~ 85 (96)
.-|++||+ +|++|+.-.+ +++ -+-.+-|-|.|+.|-.|..+
T Consensus 215 ~lI~eiR~-~GARV~LI~DGDVa~ai~~~~~~sgvD~~mGiGGAPEGVlaAaAl 267 (379)
T 3roj_A 215 ELIQEIRN-AGARVRLISDGDVSAAISCAFSGTNIHALMGIGAAPEGVISAAAM 267 (379)
T ss_dssp HHHHHHHH-HTCEEEEESSCHHHHHHHTTSBTSSCCEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEeCcCcHHHHHHHhcCCCCeeEEEECCCChHHHHHHHHH
Confidence 56788865 9999998663 233 35556677899999888754
No 92
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.94 E-value=1e+02 Score=17.50 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=40.3
Q ss_pred EEEEEeecCccceeeccchhHHHHHHHHhCCeEEecCC-----CCC--CceEEEEEc-CHHHHHHHHHHHhH
Q psy2768 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS-----FNE--EETNVHIVG-SFFSVQETLKGCPN 88 (96)
Q Consensus 25 ~~~~~ip~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~--~~~~v~I~G-~~~~v~~A~~~I~~ 88 (96)
-+++..+.+.+ ..--|.++-+.+|..++|-.. .+. ..-.+.+.| ..+++.+|+..+.+
T Consensus 22 lvrL~f~g~~~------~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTT------TEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESC------HHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCcc------CchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 56666665533 345689999999998888652 222 334466789 88889999987765
No 93
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=20.09 E-value=1.4e+02 Score=17.83 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.3
Q ss_pred CceEEEEEcCHHHHHHHHHHHhHH
Q psy2768 66 EETNVHIVGSFFSVQETLKGCPNI 89 (96)
Q Consensus 66 ~~~~v~I~G~~~~v~~A~~~I~~~ 89 (96)
....+.|+|++..++.....+..+
T Consensus 110 ~tn~l~v~g~~~~v~~v~~~i~~l 133 (137)
T 2y9k_A 110 RKGTFYVSGPPVYVDMVVNAATMM 133 (137)
T ss_dssp STTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHh
Confidence 356788999999999888877654
Done!