Your job contains 1 sequence.
>psy2768
MAQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLP
NSFNEEETNVHIVGSFFSVQETLKGCPNIVDQPSID
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2768
(96 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 286 2.2e-24 1
UNIPROTKB|K7GM69 - symbol:RFC4 "Uncharacterized protein" ... 157 1.7e-11 1
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 164 2.3e-11 1
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 164 2.5e-11 1
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 164 2.7e-11 1
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 164 2.8e-11 1
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 164 2.8e-11 1
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 164 3.1e-11 1
ZFIN|ZDB-GENE-060503-536 - symbol:igf2bp2b "insulin-like ... 162 3.4e-11 1
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 164 3.4e-11 1
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 164 3.4e-11 1
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 164 3.5e-11 1
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 164 3.5e-11 1
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 164 3.5e-11 1
ZFIN|ZDB-GENE-070912-44 - symbol:igf2bp2a "insulin-like g... 162 5.8e-11 1
UNIPROTKB|F1NWN2 - symbol:IGF2BP2 "Uncharacterized protei... 158 1.3e-10 1
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 158 1.4e-10 1
ZFIN|ZDB-GENE-000308-1 - symbol:igf2bp3 "insulin-like gro... 153 5.1e-10 1
UNIPROTKB|E1BKJ7 - symbol:IGF2BP1 "Uncharacterized protei... 152 6.4e-10 1
UNIPROTKB|E2RTC5 - symbol:IGF2BP1 "Uncharacterized protei... 152 6.4e-10 1
UNIPROTKB|Q9NZI8 - symbol:IGF2BP1 "Insulin-like growth fa... 152 6.4e-10 1
UNIPROTKB|I3L9X2 - symbol:IGF2BP1 "Uncharacterized protei... 152 6.4e-10 1
MGI|MGI:1890357 - symbol:Igf2bp1 "insulin-like growth fac... 152 6.4e-10 1
RGD|708580 - symbol:Igf2bp1 "insulin-like growth factor 2... 152 6.4e-10 1
UNIPROTKB|O42254 - symbol:IGF2BP1 "Insulin-like growth fa... 151 8.2e-10 1
UNIPROTKB|Q5ZLP8 - symbol:IGF2BP3 "Insulin-like growth fa... 147 2.2e-09 1
UNIPROTKB|O57526 - symbol:igf2bp3-b "Insulin-like growth ... 146 3.0e-09 1
UNIPROTKB|O73932 - symbol:igf2bp3-a "Insulin-like growth ... 146 3.0e-09 1
ZFIN|ZDB-GENE-060929-1258 - symbol:igf2bp1 "insulin-like ... 140 1.3e-08 1
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 137 2.6e-08 1
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 137 2.6e-08 1
UNIPROTKB|F1MPB2 - symbol:IGF2BP3 "Uncharacterized protei... 137 2.6e-08 1
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 136 3.4e-08 1
WB|WBGene00010908 - symbol:M88.5 species:6239 "Caenorhabd... 135 7.1e-08 1
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 123 3.0e-07 1
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 123 3.2e-07 1
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 116 4.2e-07 1
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 120 6.6e-07 1
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 112 1.0e-06 1
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 114 1.1e-06 1
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 116 1.6e-06 1
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 116 1.8e-06 1
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 116 2.0e-06 1
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 118 2.1e-06 1
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 116 2.2e-06 1
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 116 2.3e-06 1
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 115 2.3e-06 1
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 115 2.3e-06 1
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 115 2.4e-06 1
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 115 2.6e-06 1
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 111 2.7e-06 1
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 115 2.8e-06 1
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 115 2.8e-06 1
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 115 3.0e-06 1
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 115 3.0e-06 1
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 115 3.1e-06 1
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 115 3.1e-06 1
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 115 3.1e-06 1
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 115 3.1e-06 1
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 115 3.1e-06 1
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 107 3.4e-06 1
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 112 4.5e-06 1
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 112 4.7e-06 1
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 112 5.1e-06 1
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 112 5.1e-06 1
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 112 6.0e-06 1
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 112 6.1e-06 1
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 112 6.1e-06 1
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 112 6.1e-06 1
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 112 6.1e-06 1
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 112 6.1e-06 1
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 112 6.1e-06 1
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 112 6.4e-06 1
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 112 6.4e-06 1
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 111 6.5e-06 1
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 111 7.8e-06 1
UNIPROTKB|B7ZAG4 - symbol:TDRKH "cDNA, FLJ79178, highly s... 99 2.4e-05 1
UNIPROTKB|E9PKN8 - symbol:TDRKH "Tudor and KH domain-cont... 99 2.4e-05 1
DICTYBASE|DDB_G0291059 - symbol:DDB_G0291059 "K homology ... 107 2.4e-05 1
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 108 3.3e-05 1
UNIPROTKB|F8VYI3 - symbol:NOVA1 "RNA-binding protein Nova... 97 3.9e-05 1
UNIPROTKB|I3L2B5 - symbol:NOVA1 "RNA-binding protein Nova... 97 3.9e-05 1
UNIPROTKB|D4A6P7 - symbol:Nova1 "RNA-binding protein Nova... 97 3.9e-05 1
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 97 4.2e-05 1
UNIPROTKB|F8VWX1 - symbol:NOVA1 "RNA-binding protein Nova... 97 4.8e-05 1
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 106 7.4e-05 1
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 104 7.6e-05 1
UNIPROTKB|F8W659 - symbol:NOVA1 "RNA-binding protein Nova... 97 9.2e-05 1
RGD|1311196 - symbol:Tdrkh "tudor and KH domain containin... 99 0.00012 1
UNIPROTKB|E1B8C6 - symbol:E1B8C6 "Uncharacterized protein... 91 0.00017 1
UNIPROTKB|J3KQU3 - symbol:NOVA1 "RNA-binding protein Nova... 97 0.00017 1
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 100 0.00020 1
UNIPROTKB|F8VTZ0 - symbol:PCBP2 "Poly(rC)-binding protein... 90 0.00021 1
UNIPROTKB|G8JLA5 - symbol:NOVA1 "RNA-binding protein Nova... 90 0.00021 1
UNIPROTKB|F1LT74 - symbol:F1LT74 "Uncharacterized protein... 97 0.00022 1
UNIPROTKB|F1LXN9 - symbol:F1LXN9 "Uncharacterized protein... 98 0.00022 1
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 97 0.00022 1
UNIPROTKB|H3BSS4 - symbol:PCBP2 "Poly(rC)-binding protein... 92 0.00023 1
UNIPROTKB|I3LP40 - symbol:TDRKH "Uncharacterized protein"... 100 0.00024 1
UNIPROTKB|F1NP95 - symbol:NOVA1 "Uncharacterized protein"... 97 0.00025 1
WARNING: Descriptions of 75 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 286 (105.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 60/85 (70%), Positives = 68/85 (80%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQY+IFEKMREEG G D+VRLT+EL+V SSQVGRIIGKGGQNVRELQR TGS+IKLP
Sbjct: 382 AQYMIFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPE 441
Query: 62 ------SFNEEETNVHIVGSFFSVQ 80
S +EET VHI+G F+SVQ
Sbjct: 442 HALAPPSGGDEETPVHIIGLFYSVQ 466
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 83 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 142
Query: 62 SFN---EEETNVHIVGSFFSVQ 80
EE V I+G FF+ Q
Sbjct: 143 DQTPDENEEVIVRIIGHFFASQ 164
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 164 (62.8 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 366 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 425
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 426 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 459
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 164 (62.8 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 387 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 446
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 447 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 480
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 409 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 468
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 469 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 502
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 413 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 472
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 473 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 506
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 420 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 479
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 480 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 513
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 164 (62.8 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 445 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 504
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 505 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 538
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 162 (62.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VPS+ GR+IGKGG+ V ELQ T + + +P
Sbjct: 333 AQGRIYGKLKEENFFTAKEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPR 392
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G FF+ Q + IV Q
Sbjct: 393 DQTPDENDDVFVKIIGHFFASQTAQRKIREIVQQ 426
Score = 93 (37.8 bits), Expect = 0.00099, P = 0.00099
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 15 LFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL--PNSFNEEETNVHI 72
L G EV + L +P+ VG +IGK GQ+++EL G+ IK+ P S +E E V I
Sbjct: 267 LQGGEQEV---VYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVII 323
Query: 73 VG 74
G
Sbjct: 324 TG 325
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 164 (62.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 481 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 540
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 541 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 574
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 164 (62.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 481 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 540
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 541 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 574
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 164 (62.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 488 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 547
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 548 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 581
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 164 (62.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 488 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 547
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 548 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 581
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 164 (62.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 39/94 (41%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 494 AQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 553
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 554 DQTPDENEEVIVRIIGHFFASQTAQRKIREIVQQ 587
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 162 (62.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 37/94 (39%), Positives = 52/94 (55%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPSS GR+IGKGG+ V ELQ T + + +P
Sbjct: 494 AQGRIFGKLKEENFFTAKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPR 553
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G FF+ Q + I+ Q
Sbjct: 554 DQTPDENDEVFVKISGHFFASQTAQRKIREIIQQ 587
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 158 (60.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPS GR+IGKGG+ V ELQ T + + +P
Sbjct: 439 AQGRIFGKLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPR 498
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 499 DQTPDENEEVIVKIIGHFFASQTAQRKIREIVQQ 532
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPS GR+IGKGG+ V ELQ T + + +P
Sbjct: 461 AQGRIFGKLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPR 520
Query: 62 SFN---EEETNVHIVGSFFSVQETLKGCPNIVDQ 92
EE V I+G FF+ Q + IV Q
Sbjct: 521 DQTPDENEEVIVKIIGHFFASQTAQRKIREIVQQ 554
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 153 (58.9 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ IF K++EE F +EV+L + VPS GR+IGKGG+ V ELQ T + + +P
Sbjct: 469 AQGRIFGKLKEENFFGPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVVVPR 528
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 529 DQTPDENDQVVVKITGHFYASQLAQRKIQEIISQ 562
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 466 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 526 DQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 466 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 526 DQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 466 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 526 DQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 466 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 526 DQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 466 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 526 DQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 466 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 526 DQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 559
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 151 (58.2 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VP+S GR+IGKGG+ V ELQ T + + +P
Sbjct: 465 AQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 524
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E V I+G F++ Q + +I+ Q
Sbjct: 525 DQTPDENEQVIVKIIGHFYASQMAQRKIRDILAQ 558
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VPS GR+IGKGG+ V ELQ T + + +P
Sbjct: 470 AQGRIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 529
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 530 DQTPDENDQVVVKITGHFYACQLAQRKIQEILAQ 563
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 146 (56.5 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VPS GR+IGKGG+ V ELQ T + + +P
Sbjct: 478 AQGRIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 537
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 538 DQTPDENDQVVVKITGHFYASQLAQRKIQEILAQ 571
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 146 (56.5 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + VPS GR+IGKGG+ V ELQ T + + +P
Sbjct: 479 AQGRIYGKLKEENFFGPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 538
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 539 DQTPDENDEVVVKITGHFYASQLAQRKIQEILAQ 572
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 140 (54.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE F +EV+L + V ++ GR+IGKGG+ V ELQ T + + +P
Sbjct: 468 AQGRIYGKLKEENFFGPKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNLTAAEVVVPR 527
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I+G F++ Q + +I+ Q
Sbjct: 528 EQTPDEHDQVIVKIIGHFYASQLAQRKIRDILTQ 561
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE + +EV+L + VPS GR+IGKGG+ V ELQ + + + +P
Sbjct: 466 AQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 526 DQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 559
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE + +EV+L + VPS GR+IGKGG+ V ELQ + + + +P
Sbjct: 466 AQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 526 DQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 559
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE + +EV+L + VPS GR+IGKGG+ V ELQ + + + +P
Sbjct: 467 AQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR 526
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 527 DQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 560
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 136 (52.9 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I+ K++EE + +EV+L + VPS GR+IGKGG+ V ELQ + + + +P
Sbjct: 466 AQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVPR 525
Query: 62 SFNEEETN---VHIVGSFFSVQETLKGCPNIVDQ 92
+E + V I G F++ Q + I+ Q
Sbjct: 526 DQTPDENDQVVVKITGHFYACQVAQRKIQEILTQ 559
>WB|WBGene00010908 [details] [associations]
symbol:M88.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:Z34802 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 PIR:T23837 RefSeq:NP_001022695.1
ProteinModelPortal:Q21605 SMR:Q21605 IntAct:Q21605 STRING:Q21605
PaxDb:Q21605 PRIDE:Q21605 EnsemblMetazoa:M88.5a GeneID:175595
KEGG:cel:CELE_M88.5 UCSC:M88.5a CTD:175595 WormBase:M88.5a
HOGENOM:HOG000021364 InParanoid:Q21605 OMA:FPIHSAS NextBio:888828
ArrayExpress:Q21605 Uniprot:Q21605
Length = 828
Score = 135 (52.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 28/48 (58%), Positives = 37/48 (77%)
Query: 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETN 69
+R+ E+ VP+ +GRIIGKGGQNVRELQR TG+++K+P EEE N
Sbjct: 680 LRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIP----EEERN 723
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 123 (48.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQPS 94
+K C ++D PS
Sbjct: 158 CVKQICVVMLDPPS 171
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 123 (48.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 8 EKMREEGLFAG------ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
+KMREE + + A +T+ LVVP+SQ G +IGKGG ++E++ STG+ +++
Sbjct: 37 KKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 96
Query: 62 SF--NEEETNVHIVGSFFSVQETLKG-CPNIVDQP 93
N E + I G S+ E +K C +++ P
Sbjct: 97 DMLPNSTERAITIAGIPQSIIECVKQICVVMLESP 131
Score = 95 (38.5 bits), Expect = 0.00037, P = 0.00037
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 13 EGLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G +AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 233 KGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 292
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 293 VTITGSAASI 302
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 116 (45.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
Score = 90 (36.7 bits), Expect = 0.00047, P = 0.00047
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 12 EEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVH 71
+ G+ G V LTI L++ +VG IIGK G++V++++ +G+ I + N E +
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIIT 60
Query: 72 IVG 74
+ G
Sbjct: 61 LAG 63
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 120 (47.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ +VVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G+ S+ E
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTPLSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
Score = 91 (37.1 bits), Expect = 0.00098, P = 0.00098
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 12 EEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVH 71
+ G+ G V LTI L++ +VG IIGK G++V++++ +G+ I + N E +
Sbjct: 2 DSGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIIT 60
Query: 72 IVG 74
+ G
Sbjct: 61 LAG 63
Score = 91 (37.1 bits), Expect = 0.00098, P = 0.00098
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 13 EGLFAGADEVRLT--IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 228 QGFTAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQ 287
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 288 VTITGSPASI 297
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 90 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 149
Query: 82 TLK 84
+K
Sbjct: 150 CVK 152
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 19 ADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSF 76
A R+T+ LVVP+SQ G +IGKGG ++E++ STG +++ N E + I G
Sbjct: 81 ASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNSTERAITIAGIP 140
Query: 77 FSVQETLK 84
S+ E +K
Sbjct: 141 QSIIECVK 148
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
Score = 92 (37.4 bits), Expect = 0.00076, P = 0.00076
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 14 GLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNV 70
G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N + V
Sbjct: 229 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 288
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 289 TITGSAASI 297
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 13 EGLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G +AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 241 KGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 300
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 301 VTITGSAASI 310
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LV+P+SQ G +IGKGG ++E++ TG+ +++ N E V I GS ++ +
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQDAIIQ 170
Query: 82 TLKG-CPNIVDQP 93
+K C I++ P
Sbjct: 171 CVKLICTVILESP 183
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 116 (45.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
Score = 92 (37.4 bits), Expect = 0.00088, P = 0.00088
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 14 GLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNV 70
G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N + V
Sbjct: 260 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 319
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 320 TITGSAASI 328
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
Score = 95 (38.5 bits), Expect = 0.00044, P = 0.00044
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 13 EGLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G +AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 272 KGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 331
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 332 VTITGSAASI 341
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 115 (45.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 115 (45.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 115 (45.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 115 (45.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 111 (44.1 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETN--VHIVGSFFSVQE 81
+T+ LV P+SQ G +IGKGG ++E++ STG+ +++ + T V I G+ ++ +
Sbjct: 101 VTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGTPHAITQ 160
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 161 CVKHICTVMLESP 173
Score = 99 (39.9 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 11 REEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNV 70
RE G+ G V LTI L++ +VG IIGK G+ V++++ +G+ I + + + E V
Sbjct: 4 REGGVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSSPERI-V 62
Query: 71 HIVGS 75
I G+
Sbjct: 63 TITGA 67
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQ 159
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 160 CVKQICVVMLESP 172
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQ 159
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 160 CVKQICVVMLESP 172
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 158 CVKQICVVMLESP 170
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 190 CVKQICVVMLESP 202
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 190 CVKQICVVMLESP 202
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 190 CVKQICVVMLESP 202
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 190 CVKQICVVMLESP 202
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/73 (34%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
Query: 82 TLKG-CPNIVDQP 93
+K C +++ P
Sbjct: 190 CVKQICVVMLESP 202
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
Score = 90 (36.7 bits), Expect = 0.00023, P = 0.00023
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 12 EEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVH 71
+ G+ G V LTI L++ +VG IIGK G++V++++ +G+ I + N E +
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIIT 60
Query: 72 IVG 74
+ G
Sbjct: 61 LAG 63
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 112 (44.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 138
Query: 82 TLK 84
+K
Sbjct: 139 CVK 141
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 112 (44.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 99
Query: 82 TLK 84
+K
Sbjct: 100 CVK 102
Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 13 EGLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G +AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 218 KGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 277
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 278 VTITGSAASI 287
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 112 (44.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 95 (38.5 bits), Expect = 0.00036, P = 0.00036
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 13 EGLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G +AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 231 KGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 290
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 291 VTITGSAASI 300
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 112 (44.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 92 (37.4 bits), Expect = 0.00078, P = 0.00078
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 14 GLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNV 70
G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N + V
Sbjct: 233 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 292
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 293 TITGSAASI 301
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 112 (44.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 92 (37.4 bits), Expect = 0.00090, P = 0.00090
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 14 GLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNV 70
G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N + V
Sbjct: 264 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 323
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 324 TITGSAASI 332
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP++Q G +IGKGG ++E++ STG+ +++ N E + I G SV E
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V
Sbjct: 268 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 327
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 328 TITGSAASI 336
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP++Q G +IGKGG ++E++ STG+ +++ N E + I G SV E
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V
Sbjct: 268 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 327
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 328 TITGSAASI 336
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP++Q G +IGKGG ++E++ STG+ +++ N E + I G SV E
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V
Sbjct: 268 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 327
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 328 TITGSAASI 336
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP++Q G +IGKGG ++E++ STG+ +++ N E + I G SV E
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V
Sbjct: 268 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 327
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 328 TITGSAASI 336
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP++Q G +IGKGG ++E++ STG+ +++ N E + I G SV E
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V
Sbjct: 268 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 327
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 328 TITGSAASI 336
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP++Q G +IGKGG ++E++ STG+ +++ N E + I G SV E
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V
Sbjct: 268 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 327
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 328 TITGSAASI 336
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 112 (44.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 112 (44.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E + I G S+ E
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIE 157
Query: 82 TLK 84
+K
Sbjct: 158 CVK 160
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 111 (44.1 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 165
Query: 82 TLK 84
+K
Sbjct: 166 CVK 168
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ LVVP+SQ G +IGKGG ++E++ STG+ +++ N E V I G+ ++ +
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 156
Query: 82 TLK 84
+K
Sbjct: 157 CVK 159
>UNIPROTKB|B7ZAG4 [details] [associations]
symbol:TDRKH "cDNA, FLJ79178, highly similar to Tudor and
KH domain-containing protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:AL589765 UniGene:Hs.144439 HGNC:HGNC:11713
EMBL:AK316279 IPI:IPI00922525 SMR:B7ZAG4 STRING:B7ZAG4
Ensembl:ENST00000525790 Ensembl:ENST00000526413 Uniprot:B7ZAG4
Length = 140
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|E9PKN8 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005739 GO:GO:0003723 EMBL:AL589765 HGNC:HGNC:11713
IPI:IPI00981760 ProteinModelPortal:E9PKN8 SMR:E9PKN8
Ensembl:ENST00000526378 ArrayExpress:E9PKN8 Bgee:E9PKN8
Uniprot:E9PKN8
Length = 131
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>DICTYBASE|DDB_G0291059 [details] [associations]
symbol:DDB_G0291059 "K homology (KH), type 1 domain
containing-protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR002110 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 PROSITE:PS50088
SMART:SM00248 SMART:SM00322 dictyBase:DDB_G0291059
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003723 EMBL:AAFI02000174 eggNOG:NOG313207
RefSeq:XP_635430.1 ProteinModelPortal:Q54FA7
EnsemblProtists:DDB0233646 GeneID:8627931 KEGG:ddi:DDB_G0291059
InParanoid:Q54FA7 OMA:MKYINEI Uniprot:Q54FA7
Length = 384
Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETL 83
+TI L +P G+IIG+GG+N++EL+ T + I+LP S N + + I G V++
Sbjct: 186 VTILLPIPKVHHGKIIGRGGKNLKELRELTNTQIQLPES-NVTDNKITIKGRKDDVEKAR 244
Query: 84 KGCPNIVDQP 93
+ +IV+ P
Sbjct: 245 QMILDIVNPP 254
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 108 (43.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 5 LIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF- 63
LI +K E + ++ I L+VP+SQ G +IGK G ++E++++TG I++ +
Sbjct: 84 LITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEML 143
Query: 64 -NEEETNVHIVGSFFSVQETL-KGCPNIVDQP 93
N E V + GS + + + + C +++ P
Sbjct: 144 PNSTERAVTLSGSAEQITQCIYQICLVMLESP 175
>UNIPROTKB|F8VYI3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01017995
ProteinModelPortal:F8VYI3 SMR:F8VYI3 PRIDE:F8VYI3
Ensembl:ENST00000483536 ArrayExpress:F8VYI3 Bgee:F8VYI3
Uniprot:F8VYI3
Length = 121
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>UNIPROTKB|I3L2B5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:I3L2B5 SMR:I3L2B5
Ensembl:ENST00000574031 Bgee:I3L2B5 Uniprot:I3L2B5
Length = 152
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>UNIPROTKB|D4A6P7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00951323
Ensembl:ENSRNOT00000066327 ArrayExpress:D4A6P7 Uniprot:D4A6P7
Length = 155
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 87
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 97 (39.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 97 (39.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 51
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 106 (42.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS 75
++ L V +S VGRIIG+GG +RELQ S+G+ IK+ +E E V I GS
Sbjct: 102 SVTLNVENSLVGRIIGRGGAKIRELQESSGASIKITRGAHEAE--VLICGS 150
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 104 (41.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 17 AGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
A A+E +++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 36 APAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 81
>UNIPROTKB|F8W659 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01021871
ProteinModelPortal:F8W659 SMR:F8W659 Ensembl:ENST00000547619
ArrayExpress:F8W659 Bgee:F8W659 Uniprot:F8W659
Length = 211
Score = 97 (39.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>RGD|1311196 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1311196 GO:GO:0003723 EMBL:CH474015 eggNOG:NOG262512
HOGENOM:HOG000037932 OrthoDB:EOG4T4CV4 UniGene:Rn.98848
EMBL:BC059161 IPI:IPI00370637 SMR:Q6PCT7 UCSC:RGD:1311196
HOVERGEN:HBG062756 InParanoid:Q6PCT7 Genevestigator:Q6PCT7
Uniprot:Q6PCT7
Length = 296
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 13 EGLFAGAD-EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE-TNV 70
+G +A D + T EL +P++ +G IIG+ G N+ E+++ + + IK+ N V
Sbjct: 28 KGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGSSGRQV 87
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 88 TITGSAASI 96
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 97 (39.2 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 11 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 47
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 100 (40.3 bits), Expect = 0.00020, P = 0.00020
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSV 79
+E +++++PS G IIGKGGQ + +LQ+ TG+ IKL S + V
Sbjct: 53 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 112
Query: 80 QETLKGCPNIV 90
E L G N +
Sbjct: 113 VEALNGVHNFI 123
>UNIPROTKB|F8VTZ0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01020805
ProteinModelPortal:F8VTZ0 SMR:F8VTZ0 Ensembl:ENST00000550192
ArrayExpress:F8VTZ0 Bgee:F8VTZ0 Uniprot:F8VTZ0
Length = 64
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 12 EEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVH 71
+ G+ G V LTI L++ +VG IIGK G++V++++ +G+ I + N E +
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIIT 60
Query: 72 IVG 74
+ G
Sbjct: 61 LAG 63
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL---PNSFNEEETNVHIVG 74
D ++ ++++VP+S G IIGKGG V+ + +G+ ++L P+ N +E V + G
Sbjct: 23 DRIK-QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG 79
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 29 VVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQETLKG- 85
VVP+SQ G +IGKG ++E++ STG+ ++ + N E + I G S+ E +K
Sbjct: 102 VVPASQCGSLIGKG--TIKEIRESTGAQVQAAGNMLPNSTERAITIAGILPSIIECVKQI 159
Query: 86 CPNIVDQPSI 95
C +++ PS+
Sbjct: 160 CVVMLETPSL 169
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 98 (39.6 bits), Expect = 0.00022, P = 0.00022
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 14 GLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIV 73
G ++ D +T ++ +P G IIG+GGQ ++++ +G+ IK E+ + I
Sbjct: 289 GSYSDLDRHIITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKTDELEGSEDRIIIIT 348
Query: 74 GSFFSVQETLKGCPNIVDQPSI 95
G+ +Q N V Q S+
Sbjct: 349 GTQDQIQNAQYLLQNSVKQYSV 370
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 92 (37.4 bits), Expect = 0.00023, P = 0.00023
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 14 GLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNV 70
G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N + V
Sbjct: 95 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 154
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 155 TITGSAASI 163
>UNIPROTKB|I3LP40 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:FP340554
Ensembl:ENSSSCT00000032144 Uniprot:I3LP40
Length = 558
Score = 100 (40.3 bits), Expect = 0.00024, P = 0.00024
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQESVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DIGDERVLLISG--FPVQ 107
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 71
>UNIPROTKB|C9JSZ1 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 IPI:IPI00641948
ProteinModelPortal:C9JSZ1 SMR:C9JSZ1 STRING:C9JSZ1 PRIDE:C9JSZ1
Ensembl:ENST00000421641 HOGENOM:HOG000110867 ArrayExpress:C9JSZ1
Bgee:C9JSZ1 Uniprot:C9JSZ1
Length = 232
Score = 94 (38.1 bits), Expect = 0.00025, P = 0.00025
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + +Q+ +G I++ P+S E + + G+ SVQ
Sbjct: 121 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA 180
Query: 83 LKGCPNIVDQ 92
+ IV++
Sbjct: 181 KRLLDQIVEK 190
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 101 (40.6 bits), Expect = 0.00027, P = 0.00027
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 10 MREEGLF--AGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN 64
M E+G A + E+R+ L++P+ +G +IGK G NVRE++++ G++IK F+
Sbjct: 43 MDEDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFD 99
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 101 (40.6 bits), Expect = 0.00027, P = 0.00027
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 10 MREEGLF--AGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN 64
M E+G A + E+R+ L++P+ +G +IGK G NVRE++++ G++IK F+
Sbjct: 43 MDEDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFD 99
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
+T+ ++VPS Q+G +IGKGG ++ L+ T + I++ N
Sbjct: 73 VTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRN 110
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 96 (38.9 bits), Expect = 0.00030, P = 0.00030
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 28 LVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQETLKG 85
LVVP Q G +IGKGG ++E++ +TG+ +++ N E I G S+ E +K
Sbjct: 102 LVVPDCQCGSLIGKGGCKIKEIRENTGAQVQVAGHMLPNSTEWAFTIAGIPQSIIECVKQ 161
Query: 86 -CPNIVDQPSI 95
C +++ PS+
Sbjct: 162 FCVVMLEIPSL 172
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+E +++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 1 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 43
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 98 (39.6 bits), Expect = 0.00030, P = 0.00030
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL--PNSFNEEETNVHIVGS 75
LT ++ +P+ VG IIGKGG + E++ +GS+IK+ P N E V I G+
Sbjct: 391 LTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-NSNERLVTITGT 443
>MGI|MGI:1919884 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing protein"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 MGI:MGI:1919884 GO:GO:0005739
GO:GO:0003723 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00530000063224 CTD:11022 eggNOG:NOG262512
HOGENOM:HOG000037932 HOVERGEN:HBG055309 OMA:FHADEYL
OrthoDB:EOG4T4CV4 EMBL:BC049363 IPI:IPI00330464 RefSeq:NP_082583.1
UniGene:Mm.331198 UniGene:Mm.470795 PDB:1WE8 PDBsum:1WE8
ProteinModelPortal:Q80VL1 SMR:Q80VL1 STRING:Q80VL1
PhosphoSite:Q80VL1 PaxDb:Q80VL1 PRIDE:Q80VL1
Ensembl:ENSMUST00000045245 Ensembl:ENSMUST00000166032 GeneID:72634
KEGG:mmu:72634 UCSC:uc008qge.1 InParanoid:Q80VL1
EvolutionaryTrace:Q80VL1 NextBio:336631 Bgee:Q80VL1
CleanEx:MM_TDRKH Genevestigator:Q80VL1
GermOnline:ENSMUSG00000041912 Uniprot:Q80VL1
Length = 560
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|G3V8T7 [details] [associations]
symbol:Tdrkh "RCG51933, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 RGD:1311196 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH474015
GeneTree:ENSGT00530000063224 CTD:11022 EMBL:AC133978
RefSeq:NP_001014060.2 UniGene:Rn.98848 PRIDE:G3V8T7
Ensembl:ENSRNOT00000028299 GeneID:310652 KEGG:rno:310652
NextBio:662332 Uniprot:G3V8T7
Length = 560
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|Q9Y2W6 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH471121 EMBL:AL589765
EMBL:AF119121 EMBL:AF227192 EMBL:BC022467 IPI:IPI00009982
IPI:IPI01013931 RefSeq:NP_001077432.1 RefSeq:NP_001077433.1
RefSeq:NP_001077434.1 RefSeq:NP_006853.2 UniGene:Hs.144439 PDB:2DIQ
PDB:3FDR PDBsum:2DIQ PDBsum:3FDR ProteinModelPortal:Q9Y2W6
SMR:Q9Y2W6 DIP:DIP-59459N STRING:Q9Y2W6 PhosphoSite:Q9Y2W6
DMDM:39932455 PaxDb:Q9Y2W6 PRIDE:Q9Y2W6 DNASU:11022
Ensembl:ENST00000368822 Ensembl:ENST00000368824
Ensembl:ENST00000368825 Ensembl:ENST00000368827
Ensembl:ENST00000458431 GeneID:11022 KEGG:hsa:11022 UCSC:uc001eyy.2
CTD:11022 GeneCards:GC01M151745 HGNC:HGNC:11713 HPA:HPA016419
HPA:HPA019625 MIM:609501 neXtProt:NX_Q9Y2W6 PharmGKB:PA36431
eggNOG:NOG262512 HOGENOM:HOG000037932 HOVERGEN:HBG055309
InParanoid:Q9Y2W6 OMA:FHADEYL OrthoDB:EOG4T4CV4 PhylomeDB:Q9Y2W6
EvolutionaryTrace:Q9Y2W6 GenomeRNAi:11022 NextBio:41878
ArrayExpress:Q9Y2W6 Bgee:Q9Y2W6 CleanEx:HS_TDRKH
Genevestigator:Q9Y2W6 GermOnline:ENSG00000182134 Uniprot:Q9Y2W6
Length = 561
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|E2RBJ9 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00530000063224
CTD:11022 EMBL:AAEX03011058 EMBL:AAEX03011059 RefSeq:XP_851426.2
Ensembl:ENSCAFT00000020405 GeneID:609125 KEGG:cfa:609125
Uniprot:E2RBJ9
Length = 563
Score = 99 (39.9 bits), Expect = 0.00031, P = 0.00031
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|F1MUI1 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:DAAA02007247
IPI:IPI00703713 Ensembl:ENSBTAT00000028777 Uniprot:F1MUI1
Length = 566
Score = 99 (39.9 bits), Expect = 0.00031, P = 0.00031
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGANIKQLRKKTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DIGDERVLLISG--FPVQ 107
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 98 (39.6 bits), Expect = 0.00031, P = 0.00031
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+E +++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 59 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 101
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVG 74
+T+ LV+P+SQ G +IGK G ++E++ +TG+ +++ N E V + G
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 98 (39.6 bits), Expect = 0.00033, P = 0.00033
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+E +++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 29 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 71
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 99 (39.9 bits), Expect = 0.00033, P = 0.00033
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 1 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 60
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 61 KMMLDDIVSR 70
>UNIPROTKB|J9P0T0 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 Pfam:PF01281 GO:GO:0003723
Pfam:PF00567 SMART:SM00333 PROSITE:PS50304 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020070 SUPFAM:SSF55658
GeneTree:ENSGT00530000063224 EMBL:AAEX03011058 EMBL:AAEX03011059
Ensembl:ENSCAFT00000048274 Uniprot:J9P0T0
Length = 605
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 4 YLIFEKMREEGL-FAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
Y + + REE L F G D++ IE+ VP V IIG+ G N+++L++ TG+ I +
Sbjct: 34 YRRYRESREERLTFVGEDDIE--IEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTE 91
Query: 63 FNEEETNVHIVGSFFSVQ 80
+E + I G F VQ
Sbjct: 92 DVGDERVLLISG--FPVQ 107
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 98 (39.6 bits), Expect = 0.00034, P = 0.00034
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
E+++P+S+VG +IGKGG+ +++LQ TG MI + + + + I G F VQ+
Sbjct: 155 EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAFKVQQ 212
>UNIPROTKB|F8VRH0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022901
Ensembl:ENST00000553064 ArrayExpress:F8VRH0 Bgee:F8VRH0
Uniprot:F8VRH0
Length = 310
Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 13 EGLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETN 69
+G +AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N +
Sbjct: 116 KGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 175
Query: 70 VHIVGSFFSV 79
V I GS S+
Sbjct: 176 VTITGSAASI 185
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 98 (39.6 bits), Expect = 0.00037, P = 0.00037
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
E+++P+S+VG +IGKGG+ +++LQ TG MI + + + + I G F VQ+
Sbjct: 184 EILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAFKVQQ 241
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+E +++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 91 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 133
>UNIPROTKB|F1Q3T8 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0048027 GO:GO:0003730
GeneTree:ENSGT00530000063171 EMBL:AAEX03009368 EMBL:AAEX03009369
EMBL:AAEX03009370 Ensembl:ENSCAFT00000004436 Uniprot:F1Q3T8
Length = 169
Score = 89 (36.4 bits), Expect = 0.00039, P = 0.00039
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL 59
T+ L +P+ VG IIGK GQ++++L R G+ IK+
Sbjct: 16 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 50
>RGD|1306512 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1306512
GO:GO:0003723 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HSSP:Q9UNW9 EMBL:AY325199 IPI:IPI00382225 UniGene:Rn.100446
STRING:Q7TP50 Ensembl:ENSRNOT00000050994 UCSC:RGD:1306512
HOGENOM:HOG000202688 NextBio:664798 Genevestigator:Q7TP50
Uniprot:Q7TP50
Length = 169
Score = 89 (36.4 bits), Expect = 0.00039, P = 0.00039
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL 59
T+ L +P+ VG IIGK GQ++++L R G+ IK+
Sbjct: 16 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 50
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 97 (39.2 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 87
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 97 (39.2 bits), Expect = 0.00040, P = 0.00040
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 87
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 97 (39.2 bits), Expect = 0.00041, P = 0.00041
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 99 (39.9 bits), Expect = 0.00041, P = 0.00041
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 106 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 165
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 166 KMMLDDIVSR 175
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 99 (39.9 bits), Expect = 0.00041, P = 0.00041
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 145 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 204
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 205 KMMLDDIVSR 214
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 99 (39.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 146 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 205
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 206 KMMLDDIVSR 215
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 99 (39.9 bits), Expect = 0.00043, P = 0.00043
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 142 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 201
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 202 KMMLDDIVSR 211
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 97 (39.2 bits), Expect = 0.00044, P = 0.00044
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 97 (39.2 bits), Expect = 0.00044, P = 0.00044
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 97 (39.2 bits), Expect = 0.00044, P = 0.00044
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 97 (39.2 bits), Expect = 0.00044, P = 0.00044
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 88
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 145 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 204
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 205 KMMLDDIVSR 214
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + G+ SVQ+
Sbjct: 146 MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKA 205
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 206 KMMLDDIVSR 215
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 12 EEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL 59
+ G+ G V LTI L++ +VG IIGK G++V++++ +G+ I +
Sbjct: 2 DTGVTEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI 49
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 97 (39.2 bits), Expect = 0.00045, P = 0.00045
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS 62
+++++PS G IIGKGGQ + +LQ+ TG+ IKL S
Sbjct: 59 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKS 95
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 97 (39.2 bits), Expect = 0.00048, P = 0.00048
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
EL++P+S+VG +IGKGG+ +++LQ TG M+ + + + + I G F VQ+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQ 223
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 97 (39.2 bits), Expect = 0.00048, P = 0.00048
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN 64
E ++T +L+VPS Q+G I+G+GGQ V+ ++ TG+ I++ N
Sbjct: 144 EKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRN 187
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 97 (39.2 bits), Expect = 0.00051, P = 0.00051
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
EL++P+S+VG +IGKGG+ +++LQ TG M+ + + + + I G F VQ+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQ 223
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 97 (39.2 bits), Expect = 0.00051, P = 0.00051
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
EL++P+S+VG +IGKGG+ +++LQ TG M+ + + + + I G F VQ+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQ 223
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 95 (38.5 bits), Expect = 0.00051, P = 0.00051
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 324 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 383
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 384 QYLLQNSVKQYS 395
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 95 (38.5 bits), Expect = 0.00056, P = 0.00056
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 351 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 410
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 411 QYLLQNSVKQYS 422
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00056
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 411
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 412 QYLLQNSVKQYS 423
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00056
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 411
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 412 QYLLQNSVKQYS 423
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00057
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 353 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 412
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 413 QYLLQNSVKQYS 424
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00057
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 415
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 416 QYLLQNSVKQYS 427
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 95 (38.5 bits), Expect = 0.00059, P = 0.00059
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 423
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 424 QYLLQNSVKQYS 435
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 97 (39.2 bits), Expect = 0.00060, P = 0.00060
Identities = 18/59 (30%), Positives = 39/59 (66%)
Query: 15 LFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIV 73
L+ G + T+E+ +P++ VG+++G+GG N+ ++R +G+MI++ +S N V ++
Sbjct: 566 LYGGLPQ-STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALI 623
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 95 (38.5 bits), Expect = 0.00060, P = 0.00060
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 369 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 428
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 429 QYLLQNSVKQYS 440
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 95 (38.5 bits), Expect = 0.00063, P = 0.00063
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 448 QYLLQNSVKQYS 459
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 95 (38.5 bits), Expect = 0.00063, P = 0.00063
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 448 QYLLQNSVKQYS 459
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 95 (38.5 bits), Expect = 0.00063, P = 0.00063
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 83 LKGCPNIVDQPS 94
N V Q S
Sbjct: 448 QYLLQNSVKQYS 459
>UNIPROTKB|E2RCG0 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014980 ProteinModelPortal:E2RCG0 PRIDE:E2RCG0
Ensembl:ENSCAFT00000010995 NextBio:20853046 Uniprot:E2RCG0
Length = 291
Score = 92 (37.4 bits), Expect = 0.00065, P = 0.00065
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 14 GLFAGADEVRLTI--ELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNV 70
G AG D T EL +P+ +G IIG+ G + E+++ +G+ IK+ N + V
Sbjct: 97 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 156
Query: 71 HIVGSFFSV 79
I GS S+
Sbjct: 157 TITGSAASI 165
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 89 (36.4 bits), Expect = 0.00066, P = 0.00066
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 14 GLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIV 73
G+ G V LTI L++ +VG IIGK G++V++++ +G+ I + N E + +
Sbjct: 1 GVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLA 59
Query: 74 G 74
G
Sbjct: 60 G 60
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 95 (38.5 bits), Expect = 0.00068, P = 0.00068
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
E+++P+S+VG +IGKGG+ +++LQ TG M+ + + + + I G F VQ+
Sbjct: 166 EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQ 223
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 91 (37.1 bits), Expect = 0.00071, P = 0.00071
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 5 LIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN 64
L F + E + G V LTI L++ +VG IIGK G+ V++++ +G+ I + N
Sbjct: 25 LHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG-N 83
Query: 65 EEETNVHIVG 74
E V I G
Sbjct: 84 CPERIVTITG 93
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 96 (38.9 bits), Expect = 0.00073, P = 0.00073
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS 75
E + L+ P+ +VG +IGKGG VR LQ +G+ IK+ + ++ E + ++ +
Sbjct: 273 EEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISA 327
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 97 (39.2 bits), Expect = 0.00074, P = 0.00074
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL-PNSFNEEETNVHIVGSFFSVQET 82
+T E VP VG IIG+GG+ + ++Q+ +G +++ P+S E +V + GS +VQ+
Sbjct: 209 VTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKA 268
Query: 83 LKGCPNIVDQ 92
+IV +
Sbjct: 269 KLMLDDIVSR 278
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 96 (38.9 bits), Expect = 0.00076, P = 0.00076
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 6 IFEKMREEGLFAGADEVRLTI-ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKL---P 60
I EK R F D +++ E+++P+S+ G +IGKGG+ +++LQ G M+ + P
Sbjct: 156 IVEKGRPSPAFHHNDGPGMSVHEMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP 215
Query: 61 NSFNEEETNVHIVGSFFSVQE 81
+ ++ + I G F VQ+
Sbjct: 216 QNTGADKP-LRISGDPFKVQQ 235
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 95 (38.5 bits), Expect = 0.00079, P = 0.00079
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 27 ELVVPSSQVGRIIGKGGQNVRELQRSTG-SMIKLPNSF--NEEETNVHIVGSFFSVQE 81
E+++P+S+VG +IGKGG+ +++LQ TG M+ + + + + I G F VQ+
Sbjct: 166 EILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQ 223
>UNIPROTKB|I3LIY5 [details] [associations]
symbol:I3LIY5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:CU571146
Ensembl:ENSSSCT00000028696 Uniprot:I3LIY5
Length = 548
Score = 95 (38.5 bits), Expect = 0.00079, P = 0.00079
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I K++EE +EV+L +P+S GR+ K G V ELQ + + +P
Sbjct: 438 AQGSIAGKLKEENFPGSKEEVKLEPHFRMPASAAGRVTSKSGAMVNELQNLMVAEVVVPR 497
Query: 62 SF--NEEETNVHIVGSFFSVQ 80
++++ V I+G F + Q
Sbjct: 498 DQTPDDDQVIVKIIGHFHASQ 518
>UNIPROTKB|F1RMH0 [details] [associations]
symbol:F1RMH0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:CU571146
Ensembl:ENSSSCT00000002047 Uniprot:F1RMH0
Length = 557
Score = 95 (38.5 bits), Expect = 0.00081, P = 0.00081
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 2 AQYLIFEKMREEGLFAGADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
AQ I K++EE +EV+L +P+S GR+ K G V ELQ + + +P
Sbjct: 447 AQGSIAGKLKEENFPGSKEEVKLEPHFRMPASAAGRVTSKSGAMVNELQNLMVAEVVVPR 506
Query: 62 SF--NEEETNVHIVGSFFSVQ 80
++++ V I+G F + Q
Sbjct: 507 DQTPDDDQVIVKIIGHFHASQ 527
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 94 (38.1 bits), Expect = 0.00081, P = 0.00081
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN-EEETNVHIVGSFFSVQET 82
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Query: 83 LKGCPNIVDQ 92
N V Q
Sbjct: 448 QYLLQNSVKQ 457
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 94 (38.1 bits), Expect = 0.00085, P = 0.00085
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIK-----LPN---SFNEEETNVHIVGS 75
+T+ ++VPS Q+G +IGKGGQ ++ L+ T + I+ LP + + +E + I+G
Sbjct: 146 VTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLL-IIGE 204
Query: 76 FFSVQETLKGCPNIV-DQPS 94
V+E L +++ D PS
Sbjct: 205 PLVVREALYQVASLLHDNPS 224
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 94 (38.1 bits), Expect = 0.00092, P = 0.00092
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL 59
+++++PS G IIGKGGQ + +LQ+ TG+ IKL
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 85
>UNIPROTKB|F8VW64 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 HGNC:HGNC:7886
ChiTaRS:NOVA1 EMBL:AL079343 EMBL:AL132716 IPI:IPI01020950
ProteinModelPortal:F8VW64 SMR:F8VW64 Ensembl:ENST00000549146
ArrayExpress:F8VW64 Bgee:F8VW64 Uniprot:F8VW64
Length = 96
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKL---PNSFNEEE 67
++++VP+S G IIGKGG V+ + +G+ ++L P+ N +E
Sbjct: 52 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQE 96
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 91 (37.1 bits), Expect = 0.00094, P = 0.00094
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 29 VVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQETLKG- 85
VVP+SQ G +IGKG ++E++ STG+ ++ + N E + I G S+ E +K
Sbjct: 99 VVPASQCGSLIGKG--KIKEIRESTGAQVQAAGNMLPNSTERAITIAGILPSIIECVKQI 156
Query: 86 CPNIVDQP 93
C +++ P
Sbjct: 157 CVVMLETP 164
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 93 (37.8 bits), Expect = 0.00094, P = 0.00094
Identities = 18/73 (24%), Positives = 45/73 (61%)
Query: 24 LTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF--NEEETNVHIVGSFFSVQE 81
+T+ ++VP++Q G +IGKGG +++++ +TG+ I++ + + E V + G+ ++
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINL 212
Query: 82 TL-KGCPNIVDQP 93
+ + C +++ P
Sbjct: 213 CMTQVCQILLEAP 225
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.136 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 96 96 0.00091 102 3 11 22 0.40 30
29 0.43 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 175
No. of states in DFA: 474 (50 KB)
Total size of DFA: 88 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.32u 0.13s 10.45t Elapsed: 00:00:00
Total cpu time: 10.33u 0.13s 10.46t Elapsed: 00:00:00
Start: Thu Aug 15 17:55:07 2013 End: Thu Aug 15 17:55:07 2013
WARNINGS ISSUED: 1