RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2768
(96 letters)
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 56.7 bits (137), Expect = 5e-13
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQE 81
V LTI L++ +VG IIGK G++V++++ +G+ I + N E + + G ++ +
Sbjct: 2 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-NCPERIITLAGPTNAIFK 60
Query: 82 TLK 84
Sbjct: 61 AFA 63
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 53.2 bits (128), Expect = 1e-11
Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 21 EVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQ 80
+ + + + +P +IGK G+ +++L+ T + I++P ++ + I G+ ++
Sbjct: 7 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP-DDPSNQIKITGTKEGIE 65
Query: 81 ETLKGCPNIVDQ 92
+ I +
Sbjct: 66 KARHEVLLISAE 77
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2,
nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 52.1 bits (125), Expect = 3e-11
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 22 VRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNS----FNEEETNVHIVGSFF 77
++ +E+ VP + VG I+GKGG+ + E Q TG+ I++ V I GS
Sbjct: 1 MKELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPA 60
Query: 78 SVQE 81
+ Q
Sbjct: 61 ATQA 64
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 51.8 bits (124), Expect = 3e-11
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF-NEEETNVHIVGSFFSVQE 81
+ T EL +P++ +G IIG+ G N+ E+++ +G+ IK+ N V I GS S+
Sbjct: 1 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISL 60
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 51.8 bits (124), Expect = 5e-11
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNE-EETNVHIVGSFFSVQETL 83
I++ +P VG +IG+ G+ ++++Q G I+ E I G Q
Sbjct: 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAA 63
Query: 84 KGCPNIVDQ 92
+ +++
Sbjct: 64 EIITDLLRS 72
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 79
Score = 51.4 bits (123), Expect = 5e-11
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF-NEEETNVHIVGSFFSVQETL 83
T E VP VG IIG+GG+ + +Q+ +G I++ E + + G+ SVQ
Sbjct: 9 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 68
Query: 84 KGCPNIVDQ 92
+ IV++
Sbjct: 69 RLLDQIVEK 77
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 51.4 bits (123), Expect = 6e-11
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLK 84
+ ++ + RIIG G+ +R++ I+ P S + V + G +V+E +
Sbjct: 11 SEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAID 70
Query: 85 GCPNIVDQ 92
N+ ++
Sbjct: 71 HILNLEEE 78
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 51.0 bits (122), Expect = 1e-10
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLK 84
TIE+ VP +IG+ G +R++ I +P + + I G ++
Sbjct: 11 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP-ELQSDIIAITGLAANLDRAKA 69
Query: 85 GCPNIVDQP 93
G V +
Sbjct: 70 GLLERVKEL 78
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 50.3 bits (120), Expect = 1e-10
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF-NEEETNVHIVGSFFSVQE 81
+T ++ +P G IIGKGGQ +++++ +G+ IK+ E+ + I G+ +Q
Sbjct: 3 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQN 62
Query: 82 TLKGCPNIVDQPS 94
N V Q S
Sbjct: 63 AQYLLQNSVKQYS 75
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 50.1 bits (120), Expect = 2e-10
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQE 81
+E+ + +IGK G N+ ++ +++P + + I G VQ+
Sbjct: 6 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNL-IRIEGDPQGVQQ 61
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 49.8 bits (119), Expect = 3e-10
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLP--NSFNEEETNVHIVGSFFSVQET 82
+ + V +IIG+ G + +++ I+ P + N+ + + I G + +
Sbjct: 11 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAA 70
Query: 83 LKGCPNIVDQP 93
IV +
Sbjct: 71 RDAILRIVGEL 81
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 48.4 bits (115), Expect = 7e-10
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFN----EEETNVHIVGSFFSVQ 80
+VP+ + G IIGKGG+ ++ + + +G+ I+L + I G+ +
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 61
Query: 81 E 81
Sbjct: 62 Y 62
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 47.3 bits (112), Expect = 3e-09
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 18 GADEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF---NEEETNVHIVG 74
G E+++P+S+ G +IGKGG+ +++LQ G + + + + I G
Sbjct: 2 GDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG 61
Query: 75 SFFSVQE 81
+ VQ+
Sbjct: 62 DPYKVQQ 68
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 46.5 bits (110), Expect = 9e-09
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSF---NEEETNVHIVGSFFSVQE 81
+L VP VGRIIG+GG+ +R + +++G+ I + I G+ V
Sbjct: 16 FEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 75
Query: 82 TLK 84
Sbjct: 76 AKH 78
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 41.8 bits (98), Expect = 4e-07
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLK 84
+E+ +P+ +IG G+ +R + G + V I G V++ K
Sbjct: 11 EVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKK 70
Query: 85 GCPNIVDQP 93
++ ++
Sbjct: 71 QLLHLAEEK 79
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 6 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 54
Score = 38.9 bits (91), Expect = 3e-06
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS 75
I + +P ++G +IG Q + ++Q TG+ I + E++ ++I +
Sbjct: 4 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITI-----EDDGTIYIGAA 49
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 38.6 bits (90), Expect = 7e-06
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHI 72
I + V ++G +IG G+ E+ R TG++I + E + V +
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVIT----VDTENSMVIV 47
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754
{Aeropyrum pernix [TaxId: 56636]}
Length = 104
Score = 37.4 bits (87), Expect = 3e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 35 VGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVDQP 93
GRIIG+GG+ R ++ T + I + E V I+G + + + +
Sbjct: 24 KGRIIGEGGRARRTIEEMTDTYINV------GEYEVAIIGDYERAMAAKQAIEMLAEGR 76
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA,
C-terminal domains {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 67
Score = 35.8 bits (83), Expect = 5e-05
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMI 57
D+ +VVP Q+ IGK GQN R R TG I
Sbjct: 22 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRI 59
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein
1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 35.9 bits (83), Expect = 8e-05
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 30 VPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLK 84
+ ++V R+IGK G ++ L+ I + + + + G V +
Sbjct: 7 INPARVPRVIGKKGSMIKLLKSELDVQIVV-----GQNGLIWVNGDRRKVSIAEE 56
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation
syndrome related protein 1, FXR1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 78
Score = 34.9 bits (80), Expect = 1e-04
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 23 RLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMI 57
E VV +G IG G N+++ ++ G
Sbjct: 7 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTA 41
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein
1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 34.3 bits (79), Expect = 2e-04
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 5/46 (10%)
Query: 30 VPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEETNVHIVGS 75
+ +V R+IGK L +G I + +
Sbjct: 7 IMPVKVPRVIGKNKSMYETLTSKSGCSIFV-----ANNGRIWATCP 47
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA,
C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Length = 68
Score = 34.3 bits (79), Expect = 2e-04
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMI 57
D+ ++VP +Q+ IGKGGQN R + TG I
Sbjct: 23 DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKI 60
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 34.4 bits (79), Expect = 3e-04
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQ-RSTGSMIKLPN 61
+ PS IIGK GQN+ ++ + I+
Sbjct: 22 VSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE 59
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein
1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 33.1 bits (76), Expect = 8e-04
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 30 VPSSQVGRIIGKGGQNVRELQRSTGSMI 57
+ ++V R+IG+ ++ L+ T I
Sbjct: 7 ISPAKVPRVIGRKMSMLKTLEEKTECKI 34
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 30.2 bits (68), Expect = 0.021
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 35 VGRIIGKGGQNVRELQRSTGSMIKL 59
VGRI+G G ++L+ TG I +
Sbjct: 19 VGRILGPRGLTAKQLEAETGCKIMV 43
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 27.5 bits (61), Expect = 0.15
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 35 VGRIIGKGGQNVRELQRSTGSMIKL 59
VG +IG G ++ +++ + I +
Sbjct: 20 VGLLIGPRGNTLKNIEKECNAKIMI 44
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 92
Score = 26.6 bits (59), Expect = 0.26
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 26 IELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPN 61
E+++ +++ ++G+ G+ +REL P
Sbjct: 37 TEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPE 72
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 105
Score = 26.3 bits (58), Expect = 0.37
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 20 DEVRLTIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE 67
D V +T+ + P G +IG+GG+ +R L+ + + N +E
Sbjct: 61 DNVAVTVHVAKP----GVVIGRGGERIRVLREELAKLTGKNVALNVQE 104
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.2 bits (55), Expect = 0.88
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 25 TIELVVPSSQVGRIIGKGGQNVRELQRSTGSMIKLPNSFNEEE 67
+I + + +++ G +IGK G++V +L++ + +P N E
Sbjct: 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAE 104
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain
3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 23.1 bits (50), Expect = 5.4
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 47 RELQRSTGSMIKLPNSFNEEETNVHIVGSFFSVQETLKGCPNIVD 91
R++QR ++ F +G ++ET+KG I+
Sbjct: 51 RKIQRFLSQPFQVAEVFT------GHLGKLVPLKETIKGFQQILA 89
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 118
Score = 22.9 bits (49), Expect = 7.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 33 SQVGRIIGKGGQNVREL 49
SQ +IG+GG+ ++E+
Sbjct: 60 SQKAIVIGEGGRKIKEI 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.375
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,150
Number of extensions: 12925
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 37
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)