BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2771
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 147 bits (370), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 85/108 (78%), Gaps = 1/108 (0%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT-INYIQTDAA 104
P L LG++AD+R GEFV+AMGSP L NT T GI+S+ QR + LGL +T + YIQTDAA
Sbjct: 108 PTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAA 167
Query: 105 ITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK 152
I FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D EFL ++K
Sbjct: 168 IDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKK 215
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 92/123 (74%), Gaps = 2/123 (1%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 103 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 162
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKGKFCAYS 159
TDA I +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT ++ R+ K A +
Sbjct: 163 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 222
Query: 160 KGK 162
K K
Sbjct: 223 KKK 225
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 92/123 (74%), Gaps = 2/123 (1%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 103 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 162
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKGKFCAYS 159
TDA I +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT ++ R+ K A +
Sbjct: 163 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 222
Query: 160 KGK 162
K K
Sbjct: 223 KKK 225
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 88/115 (76%), Gaps = 2/115 (1%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 103 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 162
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT-NYKRKGK 154
TDA I +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT ++ R+ K
Sbjct: 163 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAK 217
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 120 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 179
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 147
TDA I +GNSGGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT
Sbjct: 180 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 226
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 120 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 179
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLT 147
TDA I +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT
Sbjct: 180 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLT 226
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 35 IILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIIS-NKQRSSETLGLN 93
+I +P L+ G + ++ GE+ IA+G+PL +T T G++S +R + G
Sbjct: 107 VIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSG 166
Query: 94 KTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFL 146
+ IQTDAAI GNSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL
Sbjct: 167 YYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 48 LKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLG----LNKTINYIQTDA 103
+ LG ++D+R G+ V+A+GSPL L T T GI+S R T G N ++ IQTDA
Sbjct: 103 ISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDA 162
Query: 104 AITFGNSGGPLVNLDGEVIGINSMKVTA------------GISFAIPIDYAIEFLTNYKR 151
AI GNSGG LVN + +++G+NS T G+ FAIP+D A
Sbjct: 163 AINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELIS 222
Query: 152 KGKFCAYSKG 161
GK S G
Sbjct: 223 TGKASHASLG 232
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 32 EKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRS 86
E + + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS
Sbjct: 124 ETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRS 183
Query: 87 SETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDY 141
L + N+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 184 D--LNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINM 241
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 32 EKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRS 86
E + + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS
Sbjct: 124 ETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRS 183
Query: 87 SETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDY 141
L + N+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 184 D--LNIEGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINM 241
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 32 EKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRS 86
E + + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS
Sbjct: 124 ETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRS 183
Query: 87 SETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDY 141
L + N+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 184 D--LNIEGVENFIQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINM 241
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 12/120 (10%)
Query: 32 EKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRS 86
E + + N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS
Sbjct: 124 ETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRS 183
Query: 87 SETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDY 141
L + N+IQTDAAI GN+GG LVN GE+IGIN+ ++ GI FAIPI+
Sbjct: 184 D--LNIEGVENFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINM 241
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GNSGG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GNSGG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K+ + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 35 IILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNK 94
++ +N + +G +AD+ G+ V A+G+P L++T T G+IS +R + +
Sbjct: 104 VLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGR 163
Query: 95 TI-NYIQTDAAITFGNSGGPLVNLDGEVIGINSM-----KVTAGISFAIPIDYAIEFLTN 148
I + IQTDAAI GNSGGPL++ G +IGIN+ ++G+ F+IP+D +
Sbjct: 164 PIQDVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQ 223
Query: 149 YKRKGKFC 156
R GK
Sbjct: 224 LVRFGKVT 231
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GNSGG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 56 IRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLV 115
+R G+F +A+G+P L T T GI+S RS L L N+IQTDA+I GNSGG L+
Sbjct: 135 LRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTDASINRGNSGGALL 192
Query: 116 NLDGEVIGINSMKV-----TAGISFAIPIDYA 142
NL+GE+IGIN+ + + GI FAIP + A
Sbjct: 193 NLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 56 IRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLV 115
+R G+F +A+G+P L T T GI+S RS L L N+IQTDA+I GNSGG L+
Sbjct: 135 LRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTDASINRGNSGGALL 192
Query: 116 NLDGEVIGINSMKV-----TAGISFAIPIDYA 142
NL+GE+IGIN+ + + GI FAIP + A
Sbjct: 193 NLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 56 IRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLV 115
+R G+F +A+G+P L T T GI+S RS L L N+IQTDA+I GN+GG L+
Sbjct: 135 LRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTDASINRGNAGGALL 192
Query: 116 NLDGEVIGINSMKV-----TAGISFAIPIDYA 142
NL+GE+IGIN+ + + GI FAIP + A
Sbjct: 193 NLNGELIGINTAILAPGGGSVGIGFAIPSNMA 224
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 11/102 (10%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQT 101
N A+K + +R G++ +A+G+P L T T GI+S RS GLN N+IQT
Sbjct: 146 NLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS----GLNAENYENFIQT 201
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIP 138
DAAI GN+GG LVNL+GE+IGIN+ + GI FAIP
Sbjct: 202 DAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 137 GDVVLAIGNPANLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 116 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 171
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 172 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 219
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 111 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 166
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 167 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 214
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 127 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 182
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 183 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 230
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 139 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 194
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 195 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS ++ +GLN T N++QTDA+I GNSGG LVN
Sbjct: 137 GDVVLAIGNPYNLGQTITQGIIS----ATGAIGLNPTGRQNFLQTDASINHGNSGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS ++ +GLN T N++QTDA+I GNSGG LVN
Sbjct: 139 GDVVLAIGNPYNLGQTITQGIIS----ATGAIGLNPTGRQNFLQTDASINHGNSGGALVN 194
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 195 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 137 GDVVLAIGNPANLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINPGNSGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 137 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINPGNSGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 14/105 (13%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 111 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 166
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKG 153
GE++GIN++ + GI FAIP A + + R G
Sbjct: 167 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GN GG LVN
Sbjct: 137 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNXGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GN GG LVN
Sbjct: 139 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNXGGALVN 194
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 195 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 111 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 166
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE+ GIN++ + GI FAIP A + R G+
Sbjct: 167 SLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVI 214
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 139 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINHGNSGGALVN 194
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE+ GIN++ + GI FAIP A + R G+
Sbjct: 195 SLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVI 242
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++QTDA+I GN GG LVN
Sbjct: 137 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLQTDASINPGNXGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++ TDA+I GNSGG LVN
Sbjct: 137 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLATDASINHGNSGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T T GIIS R +GLN T N++ TDA+I GNSGG LVN
Sbjct: 139 GDVVLAIGNPYNLGQTITQGIISATGR----IGLNPTGRQNFLATDASINHGNSGGALVN 194
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 195 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 14/108 (12%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT--INYIQTDAAITFGNSGGPLVN 116
G+ V+A+G+P L T GIIS R +GLN T N++QTDA+I GNSGG LVN
Sbjct: 137 GDVVLAIGNPYNLGQVITQGIISATGR----IGLNPTGRQNFLQTDASINPGNSGGALVN 192
Query: 117 LDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGKFC 156
GE++GIN++ + GI FAIP A + + R G+
Sbjct: 193 SLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 59.7 bits (143), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 48 LKLGKAADIRNGEFVIAMGSPLTLNNTN-TFGIISNKQRSSETLGLNKTINYIQTDAAIT 106
L+LG +++ V +G PL + + T G++S + +S G + + IQ DAAI
Sbjct: 140 LRLGHLPRLQDS--VTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLG-IQIDAAIN 196
Query: 107 FGNSGGPLVNLDGEVIGIN----SMKVTAGISFAIPIDYAIEFLTNYKRKGKFCAY 158
GNSGGP N GE IG+ + T I + IP FLT+Y+R GK+ Y
Sbjct: 197 PGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGKYTGY 252
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 57 RNGEFVIAMGSPLTLNNTNTFGIISNKQRSS------ETLGLNKTINYIQTDAAITFGNS 110
+ G V+ +G P N T T I R S + + + + I+ D + G+S
Sbjct: 108 KTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD--VEQGDS 165
Query: 111 GGPLVNLDGEVIGI 124
GGPL++L+G+V+G+
Sbjct: 166 GGPLIDLNGQVLGV 179
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 57 RNGEFVIAMGSPLTLNNTNTFGIISNKQRSS------ETLGLNKTINYIQTDAAITFGNS 110
+ G V+ +G P N T T I R S + + + + I+ D + G+S
Sbjct: 126 KTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD--VEQGDS 183
Query: 111 GGPLVNLDGEVIGI 124
GGPL++L+G+V+G+
Sbjct: 184 GGPLIDLNGQVLGV 197
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 53 AADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI--NYIQTDAAITFGNS 110
A D + + + +G PL N+ + E+ G K I N + DA I GNS
Sbjct: 108 AKDAKVDDKIKVIGYPLPAQNS---------FKQFESTGTIKRIKDNILNFDAYIEPGNS 158
Query: 111 GGPLVNLDGEVIGI 124
G P++N + EVIG+
Sbjct: 159 GSPVLNSNNEVIGV 172
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSS-ETLGLNKTINYIQTDAA 104
PA K+G + D+++G+ + +G P ++ RS E L++ + Y
Sbjct: 141 PA-KIGTSNDLKDGDKLELIGYPFDHK-------VNQMHRSEIELTTLSRGLRYY---GF 189
Query: 105 ITFGNSGGPLVNLDGEVIGINSMKVT 130
GNSG + N +GE++GI+S KV+
Sbjct: 190 TVPGNSGSGIFNSNGELVGIHSSKVS 215
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 57 RNGEFVIAMGSPLTLNNTNTFGIISNKQRSS------ETLGLNKTINYIQTDAAITFGNS 110
+ G V+ +G P N T T I R S + + + + I+ D + G++
Sbjct: 106 KTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRAD--VEQGDA 163
Query: 111 GGPLVNLDGEVIGI 124
GGPL++L+G+V+G+
Sbjct: 164 GGPLIDLNGQVLGV 177
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSS-ETLGLNKTINYIQTDAA 104
PA K+G + D+++G+ + +G P ++ RS E L++ + Y
Sbjct: 141 PA-KIGTSNDLKDGDKLELIGYPFDHK-------VNQMHRSEIELTTLSRGLRYY---GF 189
Query: 105 ITFGNSGGPLVNLDGEVIGINSMKVT 130
GN+G + N +GE++GI+S KV+
Sbjct: 190 TVPGNAGSGIFNSNGELVGIHSSKVS 215
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKV 129
A I FG+SGGPL+ DG + GI+S +
Sbjct: 169 AGICFGDSGGPLI-CDGIIQGIDSFVI 194
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 99 IQTDAAITFGNSGGPLVNLDGEVIGIN 125
+Q D + T GNSG P+ N EVIGI+
Sbjct: 158 MQYDLSTTGGNSGSPVFNEKNEVIGIH 184
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 99 IQTDAAITFGNSGGPLVNLDGEVIGIN 125
+Q D + T GNSG P+ N EVIGI+
Sbjct: 158 MQYDLSTTGGNSGSPVFNEKNEVIGIH 184
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 105 ITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDY--AIEFLTNYKRKGKFCAYSKGK 162
I FG G N +GE +G N+ + A ID + F T KR+GK C+ K
Sbjct: 180 IYFGEPRGIKTNENGEEVGFNTE-----VYAAHEIDRIARVAFETARKRRGKLCSVDKAN 234
Query: 163 SDLRTEVLYYRN 174
L +L+ +
Sbjct: 235 V-LEASILWRKR 245
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 GNSGGPLVNLDGEVIGINSMKVTAG 132
G SG P+VN +GE+IG+ V G
Sbjct: 187 GTSGSPIVNSNGEIIGLYGNGVILG 211
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 108 GNSGGPLVNLDGEVIGINSMK 128
GNSG + NL GE+IGI+S K
Sbjct: 184 GNSGSGIFNLKGELIGIHSGK 204
>pdb|1DT2|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 245
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 108 GNSGGPLVNLDGEVIGINSMK 128
GNSG + NL GE+IGI+S K
Sbjct: 183 GNSGSGIFNLKGELIGIHSGK 203
>pdb|4I33|A Chain A, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I33|B Chain B, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 108 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 152
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 138 GSSGGPLLCPSGHVVGIFKAAVCTRGVAKAVDFIPVESMETTMRASKKK 186
>pdb|4I32|A Chain A, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I32|B Chain B, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 108 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 152
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVVFIPVESMETTMRASKKK 186
>pdb|4I31|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
pdb|4I31|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
Length = 187
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 108 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 152
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 138 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMETTMRASKKK 186
>pdb|3P8N|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8N|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8O|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
pdb|3P8O|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
Length = 186
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 108 GNSGGPLVNLDGEVIGINSMKV-TAGISFA---IPIDYAIEFLTNYKRK 152
G+SGGPL+ G V+GI V T G++ A IP++ + K+K
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMETTMRASKKK 185
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 95 TINYI-----QTDAAITFGNSGGPLVNLDGEVIGI 124
TIN+I + DA GNSG P++N E+IGI
Sbjct: 134 TINHISGTFMEFDAYAQPGNSGSPVLNSKHELIGI 168
>pdb|3SGA|E Chain E, Structures Of Product And Inhibitor Complexes Of
Streptomyces Griseus Protease A At 1.8 Angstroms
Resolution. A Model For Serine Protease Catalysis
pdb|4SGA|E Chain E, Structures Of Product And Inhibitor Complexes Of
Streptomyces Griseus Protease A At 1.8 Angstroms
Resolution. A Model For Serine Protease Catalysis
pdb|5SGA|E Chain E, Structures Of Product And Inhibitor Complexes Of
Streptomyces Griseus Protease A At 1.8 Angstroms
Resolution. A Model For Serine Protease Catalysis
pdb|1SGC|A Chain A, The 1.8 Angstroms Structure Of The Complex Between
Chymostatin And Streptomyces Griseus Protease A. A Model
For Serine Protease Catalytic Tetrahedral Intermediates
pdb|2SGA|A Chain A, Electron Density Calculations As An Extension Of Protein
Structure Refinement. Streptomyces Griseus Protease At
1.5 Angstroms Resolution
Length = 181
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 85 RSSETLGLNKTINY---------IQTDAAITFGNSGGPLVNLDGEVIGINSMKV----TA 131
RS GLN T+NY IQT+ G+SGG L +G+ S T
Sbjct: 103 RSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPGDSGGSLF-AGSTALGLTSGGSGNCRTG 161
Query: 132 GISFAIPIDYAIE 144
G +F P+ A+
Sbjct: 162 GTTFYQPVTEALS 174
>pdb|3HVN|A Chain A, Crystal Structure Of Cytotoxin Protein Suilysin From
Streptococcus Suis
Length = 508
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 56 IRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLV 115
I G+ +++ P L N ++ ++++ RS+ G+N ++ A +GN+ L
Sbjct: 123 IARGDLTLSLNLP-GLANGDSHTVVNSPTRSTVRTGVNNLLSKWNNTYAGEYGNTQAELQ 181
Query: 116 NLDGEVIGINSMKVTAGISF---AIPID 140
+ ++ +K G SF A+P+D
Sbjct: 182 YDETMAYSMSQLKTKFGTSFEKIAVPLD 209
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 30/109 (27%)
Query: 43 NNYPALKLGKAADIRNGEFV-------------------IAMGS----PLTLNNTNTFGI 79
+ Y AL++G D+RN +F+ +A+G PL + N GI
Sbjct: 68 DRYAALEVG---DVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 80 ISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMK 128
+ R + + L+K I + +A FGN V+ + E I IN+ K
Sbjct: 125 L----RLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKK 169
>pdb|1DY8|A Chain A, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY8|B Chain B, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY9|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DY9|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DXP|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1DXP|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1W3C|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|1W3C|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|3OYP|A Chain A, Hcv Ns34A IN COMPLEX WITH LIGAND 3
pdb|3OYP|B Chain B, Hcv Ns34A IN COMPLEX WITH LIGAND 3
Length = 187
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 108 GNSGGPLVNLDGEVIGINSMKV-TAGISFAI 137
G+SGGPL+ G V+GI V T G++ A+
Sbjct: 137 GSSGGPLLCPSGHVVGIFRAAVCTRGVAKAV 167
>pdb|3URE|A Chain A, Repack Mutant (T181i, W199l, Q210i) Of Alpha-Lytic
Protease
pdb|3URE|B Chain B, Repack Mutant (T181i, W199l, Q210i) Of Alpha-Lytic
Protease
Length = 198
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 93 NKTINY--------IQTDAAITFGNSGGPLVNLDGEVIGINS 126
N T NY IQ +A + G+SGG L+ G+ IG+ S
Sbjct: 118 NVTANYAEGAVRGLIQGNACMGRGDSGGSLITSAGQAIGVMS 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,806,877
Number of Sequences: 62578
Number of extensions: 181551
Number of successful extensions: 683
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 78
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)