RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2771
(174 letters)
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 177 bits (452), Expect = 6e-56
Identities = 71/122 (58%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
+ P L LG++AD+R GEFV+AMGSP L NT T GI+S+ QR + LGL + YIQ
Sbjct: 104 KEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQ 163
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKGKFCAYSK 160
TDAAI FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D EFL ++K S
Sbjct: 164 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISG 223
Query: 161 GK 162
+
Sbjct: 224 SQ 225
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 173 bits (440), Expect = 5e-54
Identities = 66/112 (58%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 103 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 162
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK 152
TDA I +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT +
Sbjct: 163 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDR 214
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo
sapiens} PDB: 3tjn_A 3nwu_A
Length = 231
Score = 160 bits (408), Expect = 2e-50
Identities = 66/112 (58%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGL-NKTINYIQ 100
Q P L LG+++++R GEFV+A+GSP +L NT T GI+S QR + LGL N ++YIQ
Sbjct: 120 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 179
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFLTNYKRK 152
TDA I +GN+GGPLVNLDGEVIGIN++KVTAGISFAIP D +FLT +
Sbjct: 180 TDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDR 231
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A
{Thermotoga maritima} SCOP: b.47.1.1
Length = 239
Score = 135 bits (341), Expect = 3e-40
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRS-SETLGLNKTINYIQTDAA 104
P L+ G + ++ GE+ IA+G+PL +T T G++S R + G + IQTDAA
Sbjct: 118 PYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAA 177
Query: 105 ITFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFLTNYKRKGK 154
I GNSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL + K
Sbjct: 178 INPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQKK 231
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 135 bits (343), Expect = 1e-39
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRS----SETLGLNKTINY 98
+ + LG ++D+R G+ V+A+GSPL L T T GI+S R E N ++
Sbjct: 98 SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDA 157
Query: 99 IQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA------------GISFAIPIDYAIEFL 146
IQTDAAI GNSGG LVN++ +++G+NS T G+ FAIP+D A
Sbjct: 158 IQTDAAINPGNSGGALVNMNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIA 217
Query: 147 TNYKRKGK 154
GK
Sbjct: 218 DELISTGK 225
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 132 bits (335), Expect = 3e-38
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTI-NYIQ 100
+N + +G +AD+ G+ V A+G+P L++T T G+IS +R + + I + IQ
Sbjct: 111 KNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 170
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKGK 154
TDAAI GNSGGPL++ G +IGIN+ + +G+ F+IP+D + R GK
Sbjct: 171 TDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGK 229
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 132 bits (333), Expect = 3e-37
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ + + + +R G+F +A+G+P L T T GI+S RS L L N+IQTD
Sbjct: 122 SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSG--LNLEGLENFIQTD 179
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKGK 154
A+I GN+GG L+NL+GE+IGIN+ + GI FAIP + A G+
Sbjct: 180 ASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGE 236
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 131 bits (332), Expect = 4e-37
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
N A+K+ + +R G++ +A+G+P L T T GI+S RS L N+IQTD
Sbjct: 145 KNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKGK 154
AAI GN+GG LVNL+GE+IGIN+ + GI FAIP + + G+
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 259
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 128 bits (324), Expect = 1e-36
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ + + + +R G+F +A+G+P L T T GI+S RS L L N+IQTD
Sbjct: 122 SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLEGLENFIQTD 179
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKGK 154
A+I GNSGG L+NL+GE+IGIN+ + GI FAIP + A G+
Sbjct: 180 ASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGE 236
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 126 bits (320), Expect = 3e-36
Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
P + + G+ V+A+G+P L T T GIIS R L N++QTD
Sbjct: 100 GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG--LNPTGRQNFLQTD 157
Query: 103 AAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKGK 154
A+I GNSGG LVN GE++GIN++ + GI FAIP A + + R G+
Sbjct: 158 ASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 217
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase;
2.60A {Escherichia coli}
Length = 245
Score = 123 bits (311), Expect = 1e-35
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ + + + +R G+F +A+G+P L T T GI+S RS L L N+IQTD
Sbjct: 122 SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRS--GLNLEGLENFIQTD 179
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKGK 154
A+I GNSGG L+NL+GE+IGIN+ + GI FAIP + A G+
Sbjct: 180 ASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGE 236
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 127 bits (320), Expect = 3e-35
Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 12/122 (9%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNN-----TNTFGIISNKQRSSETLGLNKTIN 97
N +L +G + + G+FV+A+G+P LN+ + TFGI+S +RS L + N
Sbjct: 135 KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSD--LNIEGVEN 192
Query: 98 YIQTDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 152
+IQTDAAI GNSGG LVN GE+IGIN+ ++ GI FAIPI+ + +
Sbjct: 193 FIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKF 252
Query: 153 GK 154
G
Sbjct: 253 GS 254
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR;
1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A*
3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A
3lgt_A 2r3u_A
Length = 237
Score = 120 bits (304), Expect = 1e-34
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 42 QNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQT 101
P + + G+ V+A+G+P L T T GIIS R L N++QT
Sbjct: 110 TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIG--LNPTGRQNFLQT 167
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSM--------KVTAGISFAIPIDYAIEFLTNYKRKG 153
DA+I GNSGG LVN GE++GIN++ + GI FAIP A + + R G
Sbjct: 168 DASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 227
Query: 154 K 154
+
Sbjct: 228 R 228
>3k6y_A Serine protease, possible membrane-associated serine protease;
oxidative stress, disulfide, BENT helix, HY protease;
1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Length = 237
Score = 111 bits (280), Expect = 4e-31
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSS----ETLGLNKTINYIQT 101
P L A + G V+ +G P N T T I R S T +
Sbjct: 116 PPLVFA-AEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTI 174
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVT--AGISFAIPIDYAIEFLTNYKRKGK 154
A + G+SGGPL++L+G+V+G+ A F + L
Sbjct: 175 RADVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVLTAGEVAGQLAKIGATQP 229
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 109 bits (275), Expect = 1e-30
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 11/114 (9%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAI 105
A D + + + +G PL N+ + + + N + DA I
Sbjct: 101 NVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKD-------NILNFDAYI 153
Query: 106 TFGNSGGPLVNLDGEVIGINSMKVTA----GISFAIPIDYAIEFLTNYKRKGKF 155
GNSG P++N + EVIG+ + +F+ + +
Sbjct: 154 EPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQHHH 207
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 98.4 bits (245), Expect = 5e-26
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ K+G + D+++G+ + +G P ++ S + L ++
Sbjct: 137 DKISPAKIGTSNDLKDGDKLELIGYPF--DHKVNQMHRSE-------IELTTLSRGLRYY 187
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPID 140
GNSG + N +GE++GI+S KV+ I++ + I
Sbjct: 188 GFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIG 230
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 94.9 bits (236), Expect = 6e-25
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAI 105
AA + GE + +G P N + S E + I A
Sbjct: 100 NVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVE-------GSSIVYSAHT 152
Query: 106 TFGNSGGPLVNLDGEVIGINSMKV-----TAGISFAIPIDYAIEFLTNYKRK 152
GNSG P++N + E++GI+ +F+ K
Sbjct: 153 ESGNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAENIDK 204
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 88.2 bits (219), Expect = 2e-22
Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 13/112 (11%)
Query: 46 PALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAI 105
A + + + +G P + +++ DA
Sbjct: 97 NVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISG-------TFMEFDAYA 149
Query: 106 TFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRK 152
GNSG P++N E+IGI EF+ N K
Sbjct: 150 QPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLK-EFIQNNIEK 200
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 82.4 bits (204), Expect = 1e-20
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 18/102 (17%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ LKL K + + L + ++ N +
Sbjct: 76 HPTARLKLSK--NPDYSCVTVMAYVNEDLVVSTAAAMVYG--------------NTLSYA 119
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMK--VTAGISFAIPIDYA 142
G SG P+ + V+ ++ T G P D+
Sbjct: 120 VRTQDGMSGAPVCDKYCRVLAVHQTNTGYTGGAVIIDPTDFH 161
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 80.4 bits (198), Expect = 3e-19
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ + DI G+ +G P N + + + ++ + N Q
Sbjct: 131 DLIQPANIPDHIDIAKGDKYSLLGYPY---NYSAYSLYQSQ---------IEMFNDSQYF 178
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVTA-GISFAIPIDYAIE 144
GNSG + NL GE+IGI+S K + + + I
Sbjct: 179 GYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKIS 221
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 70.1 bits (171), Expect = 4e-15
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 41 LQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQ 100
+ + A+ + + + G P + + +K + + G +Q
Sbjct: 108 IGEVVKPATMSNNAETQVNQNITVTGYPG---DKPVATMWESKGKITYLKG-----EAMQ 159
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI 143
D + T GNSG P+ N EVIGI+ V + A+ I+ +
Sbjct: 160 YDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENV 202
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 61.0 bits (148), Expect = 3e-12
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ AA+ G V GS G ++ + G + I+T+
Sbjct: 78 GTVGGQDITSAANATVGMAVTRRGSTTGT----HSGSVTALNATVNYGGGDVVYGMIRTN 133
Query: 103 AAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYA 142
G+SGGPL + IG+ S + G +F P+ A
Sbjct: 134 VCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEA 176
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels,
C-terminal alpha-beta extra domain; 1.90A {Porcine
respiratory and reproductivesyndrome virus} PDB: 3fao_A
Length = 213
Score = 50.9 bits (121), Expect = 2e-08
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 25/105 (23%)
Query: 41 LQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQ 100
Q P + + ++ + G G+I N +
Sbjct: 82 WQGVAPKAQFCEDGWTGRAYWLTSSG--------VEPGVIGN------------GFAFCF 121
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGI-SFAIPIDYAIE 144
T G+SG P++ GE++G+++ G P
Sbjct: 122 TAC----GDSGSPVITEAGELVGVHTGSNKQGGGIVTRPSGQFCN 162
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 42.6 bits (100), Expect = 2e-05
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 103
N + AA+ G+ + GS T G ++ + G N ++T A
Sbjct: 82 NGSTQDISSAANAVVGQAIKKSGS----TTKVTSGTVTAVNVTV-NYGDGPVYNMVRTTA 136
Query: 104 AITFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAIEFL 146
G+SGG +GI+S TAG + P+ A+
Sbjct: 137 CSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEALSAY 182
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 41.5 bits (97), Expect = 3e-05
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 52 KAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSG 111
+ G + G P Q + N GNSG
Sbjct: 117 RQVTNLTGTTIKISGYP----GDKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSG 172
Query: 112 GPLVNLDGEVIGINSMKVTAG-ISFAIPIDYAI-EFLTNYKRK 152
+++ + +++G+++ + G I+ A EF+ K +
Sbjct: 173 SAMLDQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ 215
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 39.1 bits (91), Expect = 2e-04
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 103
N + A + G+ V GS G ++ + IQT+
Sbjct: 75 NGSYQDITTAGNAFVGQAVQRSGS----TTGLRSGSVTGLNATVNYGSSGIVYGMIQTNV 130
Query: 104 AITFGNSGGPLVNLDGEVIGI----NSMKVTAGISFAIPIDYAIEFL 146
G+SGG L +G+ + T G +F P+ A+
Sbjct: 131 CAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALSAY 176
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 39.4 bits (91), Expect = 2e-04
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 41 LQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQ 100
+ + A+ + + + G P + + +K + + G +Q
Sbjct: 108 IGEVVKPATMSNNAETQTNQNITVTGYP---GDKPVATMWESKGKITYLKG-----EAMQ 159
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI 143
D + T GNSG P+ N EVIGI+ V + A+ I+ +
Sbjct: 160 YDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENV 202
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 38.8 bits (90), Expect = 3e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 90 LGLNKTINY--------IQTDAAITFGNSGGPLVNLDGEVIGINS 126
N T NY Q +A + G+SGG + G+ G+ S
Sbjct: 115 TAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMS 159
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 38.6 bits (89), Expect = 4e-04
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Query: 47 ALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAIT 106
+K + + + G + + G S + + +
Sbjct: 97 GVKSTPLVCPSSKDVITCYGGSSSDCLMSGVGSSSTSEFT----------WKLTHTCPTA 146
Query: 107 FGNSGGPLVNLDGEVIGINSMKVTAG-ISFAIPIDYAIEFL 146
G SG PL + V+G++ G ++ + + Y +L
Sbjct: 147 AGWSGTPLYS-SRGVVGMHVGFEEIGKLNRGVNMFYVANYL 186
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 38.3 bits (89), Expect = 4e-04
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 91 GLNKTINY--------IQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIP 138
LN ++ Y I+T G+SGG L+ + G+ S T G +F P
Sbjct: 110 ALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLLA-GNQAQGVTSGGSGNCRTGGTTFFQP 168
Query: 139 IDYAIEFL 146
++ ++
Sbjct: 169 VNPILQAY 176
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 37.3 bits (86), Expect = 9e-04
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 49 KLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFG 108
A ++ G V+ + + + G + ++ + AA G
Sbjct: 103 HFRDTARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTMPGLFAYKAATRAG 162
Query: 109 NSGGPLVNLDGE---VIGINSMKVTAGISFAIPI 139
+GG ++ DG ++G +S G+ + +
Sbjct: 163 YAGGAVLAKDGADTFIVGTHSAGG-NGVGYCSCV 195
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 34.9 bits (80), Expect = 0.005
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 85 RSSETLGLNKTINY--------IQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAG 132
N+T++Y +T G+SGG ++ + G+ S T G
Sbjct: 110 YCGTIQARNQTVSYPQGTVHSLTRTSVCAEPGDSGGSFIS-GTQAQGVTSGGSGNCRTGG 168
Query: 133 ISFAIPIDYA 142
+F ++
Sbjct: 169 TTFYQEVNPM 178
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 34.8 bits (80), Expect = 0.006
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 91 GLNKTINY--------IQTDAAITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIP 138
N+T+ Y +T A G+SGGP + + G+ S + GI+F P
Sbjct: 113 SKNQTVRYAEGTVTGLTRTTACAEGGDSGGPWLT-GSQAQGVTSGGTGDCRSGGITFFQP 171
Query: 139 IDYA 142
I+
Sbjct: 172 INPL 175
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 31.7 bits (73), Expect = 0.084
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGP+V+ +IG S
Sbjct: 178 GDSGGPIVDSSNTLIGAVS 196
>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral
protease, flavivirus, hydrolase; 1.80A {West nile virus}
PDB: 2ijo_B
Length = 185
Score = 30.7 bits (69), Expect = 0.18
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 78 GIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 124
+ N Q I + D G SG P+V+ +G+VIG+
Sbjct: 103 RNVKNVQTKPGVFKTPEGEIGAVTLD--FPTGTSGSPIVDKNGDVIGL 148
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor; HET:
OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Length = 172
Score = 30.3 bits (68), Expect = 0.19
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 107 FGNSGGPLVNLDGEVIGI--NSMKVTAG 132
G SG P+V+ +G+VIG+ N + + G
Sbjct: 117 TGTSGSPIVDKNGDVIGLYGNGVIMPNG 144
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural
protein 3; viral protease, serine protease, NS3
protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB:
3l6p_A
Length = 236
Score = 30.7 bits (69), Expect = 0.21
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 78 GIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 124
N Q + T + I D G +G P+VN +G+++G+
Sbjct: 154 KNPKNVQTAPGTFKTPEGEVGAIALDFK--PGTAGSPIVNREGKIVGL 199
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor,
catalytic histidine, induced FIT, ATP-binding, capsid
protein, helicase; HET: NKK; 2.45A {West nile virus}
Length = 198
Score = 30.3 bits (68), Expect = 0.22
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 93 NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI--NSMKVTAG 132
I + D G SG P+V+ +G+VIG+ N + + G
Sbjct: 124 EGEIGAVTLD--FPTGTSGSPIVDKNGDVIGLYGNGVIMPNG 163
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2} SCOP:
b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Length = 185
Score = 29.9 bits (67), Expect = 0.26
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 107 FGNSGGPLVNLDGEVIGI 124
G SG P+V+ G+V+G+
Sbjct: 132 PGTSGSPIVDKKGKVVGL 149
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase
inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_B
Length = 191
Score = 29.9 bits (67), Expect = 0.27
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 78 GIISNKQRSSETLGL-NKTINYIQTDAAITFGNSGGPLVNLDGEVIGI 124
N Q T I I D G SG P++N +G+V+G+
Sbjct: 113 KNPKNFQTMPGTFQTTTGEIGAIALDFK--PGTSGSPIINREGKVVGL 158
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral
protein, hydrolase; 1.70A {Tobacco vein mottling virus}
Length = 241
Score = 29.9 bits (67), Expect = 0.34
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 99 IQTDAAITFGNSGGPLVNL-DGEVIGINSMKVTAGIS--FA-IPIDYAIEFLTN 148
I T G +G PLV++ DG ++GI+S+ T S F P + +L
Sbjct: 144 ITTKD----GQAGSPLVSIIDGNILGIHSLTHTTNGSNYFVEFPEKFVATYLDA 193
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 29.1 bits (66), Expect = 0.38
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 132 GISFAIPIDYAIEFLTNYKRKGK 154
G+ FAIP + AI + ++ GK
Sbjct: 3 GLGFAIPANDAINIIEQLEKNGK 25
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta
barrel, chymotrypsin-type cystein protease, enzyme-
peptide complex; 1.80A {Tobacco etch virus} SCOP:
b.47.1.3 PDB: 1lvb_A 1q31_A
Length = 229
Score = 29.5 bits (66), Expect = 0.41
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 72 NNTNTFGIISNKQRSSETLGLNKTINY---IQTDAAITFGNSGGPLVNL-DGEVIGINSM 127
N T + S +S T + I + IQT G G PLV+ DG ++GI+S
Sbjct: 122 TNFQTKSMSSMVSDTSCTFPSSDGIFWKHWIQTKD----GQCGSPLVSTRDGFIVGIHSA 177
Query: 128 KVTAGIS--FAIPIDYAIEFLTN 148
+ F +E LTN
Sbjct: 178 SNFTNTNNYFTSVPKNFMELLTN 200
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 29.7 bits (66), Expect = 0.45
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 97 NYIQTDAAITFGNSGGPLV---NLDGEVIGINS 126
+ +T G+SGGP G NS
Sbjct: 156 STQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNS 188
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 29.1 bits (66), Expect = 0.59
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 108 GNSGGPLVNLDG--EVIGINSMKVTAGISFAIP 138
G+SGGPL DG V+G+ S V++G+ +P
Sbjct: 189 GDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLP 221
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 28.7 bits (65), Expect = 0.90
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPLV +G IGI S
Sbjct: 176 GDSGGPLV-ANGAQIGIVS 193
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPL +G GI S
Sbjct: 176 GDSGGPLN-YNGLTYGITS 193
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 27.9 bits (63), Expect = 1.4
Identities = 5/17 (29%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 108 GNSGGPLVNLDGEVIGI 124
G++G P V ++G+
Sbjct: 181 GDAGDPTVQ-QDTLVGV 196
>1ze3_H FIMH protein; soluble domain, ternary complex with chaperone and
pilus subunit; 1.84A {Escherichia coli} SCOP: b.2.3.2
Length = 122
Score = 27.4 bits (61), Expect = 1.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 66 GSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGN 109
G+ + NNT + G + S+ +LGL T NY +T +T GN
Sbjct: 72 GTIIPANNTVSLGAVGT---SAVSLGL--TANYARTGGQVTAGN 110
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine
proteinase, chymotrypsin-like proteinase, collapsed O
HOLE, transferase; 2.00A {Equine arteritis virus} SCOP:
b.47.1.3
Length = 198
Score = 27.5 bits (60), Expect = 2.0
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 98 YIQTDAAITF---GNSGGPLVNLDGEVIGINS 126
+ + + + G+SG +V V+G+++
Sbjct: 99 LLSGEVCLAWTTSGDSGSAVVQ-GDAVVGVHT 129
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 27.7 bits (61), Expect = 2.2
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 108 GNSGGPLVNLDGEVIGI--NSMKVTAGISFAIPIDYAIEFLTNYKRKGKFCAYSKGKSDL 165
G+SGGPL+ G +GI ++ T G++ A+ E + R F S +
Sbjct: 172 GSSGGPLLCPSGHAVGIFRAAV-CTRGVAKAVDFVPV-ESMETTMRSPVFTDNSSPPAVP 229
Query: 166 RT 167
++
Sbjct: 230 QS 231
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 27.2 bits (61), Expect = 2.6
Identities = 6/17 (35%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 108 GNSGGPLVNLDGEVIGI 124
G++G P V +G ++G+
Sbjct: 184 GDAGDPAVQ-NGTLVGV 199
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5'
exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB:
3cm5_A 3cm6_A
Length = 308
Score = 27.3 bits (60), Expect = 2.8
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 120 EVIGINSMKVTAGISFAIPIDYAIEFLTNYKRKGKFCAY-SKGKSDLRTEVLYY 172
+ GI + +F + + ++L + A+ + DL Y
Sbjct: 80 DFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQ 133
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 27.2 bits (61), Expect = 3.1
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 108 GNSGGPLV-NLDGEVIGINS 126
G+SGGP V + +IG+ S
Sbjct: 178 GDSGGPFVLSDKNLLIGVVS 197
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 26.4 bits (59), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPL+ +GE+ GI +
Sbjct: 178 GDSGGPLI-CNGEMHGIVA 195
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 26.6 bits (58), Expect = 4.5
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 26 NIAYYFEKHIILFHCLQNNYPALKLGK----------AADIRNGEFVIAMGSPLTLNNTN 75
N A ++ F ++N A+ LGK ADI +G + + + N
Sbjct: 334 NKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMN 393
Query: 76 TFGIISNKQRSSET 89
+ + R +T
Sbjct: 394 ITKTLHSLSRGGKT 407
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 26.3 bits (59), Expect = 5.6
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGP+V +GE+ G+ S
Sbjct: 174 GDSGGPVVC-NGELQGVVS 191
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 26.0 bits (58), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPL+ +G GI S
Sbjct: 102 GDSGGPLIC-NGMWQGITS 119
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPL+ DG + GI+S
Sbjct: 174 GDSGGPLI-CDGIIQGIDS 191
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 26.0 bits (58), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPL+ +G+ GI S
Sbjct: 175 GDSGGPLI-CNGQFQGILS 192
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition,
structures of 3'- exonuclease and ITS RNA complex,
hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Length = 299
Score = 26.1 bits (57), Expect = 7.1
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 120 EVIGINSMKVTAGISFAIPIDYAIEFLTNYK--RKGKFCAYSKGKSDLRT 167
+ GI +V +F + I+ + + K K+ + G D+
Sbjct: 138 SLTGITQDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSK 187
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 26.1 bits (58), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 111 GGPLVNLDGEVIG-INSMK--------VTAGISFAIPID 140
G PL+N DGE +G + SM+ + G A+ I
Sbjct: 494 GYPLMNDDGETVGTVESMQDKGENLKSASRGQKVAMAIK 532
>3jwn_H FIMH protein; fimbria, cell adhesion, FIMC, FIMF,FIMG, chaperone,
FI immunoglobulin domain, fimbrium, periplasm, disulfide
bond; 2.69A {Escherichia coli} PDB: 1klf_B* 1qun_B
1kiu_B* 3rfz_A 3mcy_A*
Length = 279
Score = 25.9 bits (56), Expect = 8.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 66 GSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGN 109
G+ + NNT + G + S+ +LGL T NY +T +T GN
Sbjct: 229 GTIIPANNTVSLGAVGT---SAVSLGL--TANYARTGGQVTAGN 267
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 25.6 bits (57), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGPL+ +G+ GI S
Sbjct: 182 GDSGGPLI-CNGQFQGIAS 199
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 25.6 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 108 GNSGGPLV--NLDG--EVIGINS 126
G+SGGPL +G +V GI S
Sbjct: 186 GDSGGPLNCQGANGQWQVHGIVS 208
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 24.8 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 108 GNSGGPLV-NLDG--EVIGINS 126
G+SGGPLV +G ++GI S
Sbjct: 45 GDSGGPLVCKKNGAWTLVGIVS 66
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 25.6 bits (57), Expect = 8.4
Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGP+V +G++ G+ S
Sbjct: 179 GDSGGPVVC-NGQLQGVVS 196
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 26.0 bits (57), Expect = 8.9
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 108 GNSGGPLVNLDGEVIGINSMKVTAGI-SF 135
G+SGGPL + V GI S
Sbjct: 316 GDSGGPLQAPAQYLGEYAPKMVEFGIVSQ 344
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 25.6 bits (57), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 108 GNSGGPLV-NLDG--EVIGINS 126
G+SGGPL ++G V G+ S
Sbjct: 185 GDSGGPLNCQVNGSYYVHGVTS 206
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 25.6 bits (57), Expect = 9.3
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G++GGPLV G + G+ +
Sbjct: 181 GDAGGPLVC-GGVLEGVVT 198
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 25.5 bits (57), Expect = 9.4
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 108 GNSGGPLVNLDGEVIGINS 126
G+SGGP+V G++ GI S
Sbjct: 175 GDSGGPVVC-SGKLQGIVS 192
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A
{Homo sapiens} SCOP: c.55.3.5
Length = 204
Score = 25.5 bits (56), Expect = 9.9
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 120 EVIGINSMKVTAGISFAIPIDYAIEFLTNYK--RKGKFCAYSKGKSDLRT 167
+ GI +V +F + I+++ + K K+ + G D+
Sbjct: 70 SLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSK 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,575,446
Number of extensions: 143454
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 84
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)