RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2771
(174 letters)
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 111 bits (278), Expect = 8e-32
Identities = 70/105 (66%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT-INYIQT 101
P L LG++AD+R GEFV+AMGSP L NT T GI+S+ QR + LGL +T + YIQT
Sbjct: 100 EPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQT 159
Query: 102 DAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAIEFL 146
DAAI FGN+GGPLVNLDGEVIG+N+MKVTAGISFAIP D EFL
Sbjct: 160 DAAIDFGNAGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFL 204
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 98.1 bits (243), Expect = 3e-26
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 103
N A+K+ + +R G++ +A+G+P L T T GI+S RS N+IQTDA
Sbjct: 136 NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAE--NYENFIQTDA 193
Query: 104 AITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPIDYAIEFLTNYKRKGK 154
AI GN+GG LVNL+GE+IGIN+ + GI FAIP + + G+
Sbjct: 194 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQ 249
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain
{Thermotoga maritima [TaxId: 2336]}
Length = 228
Score = 96.9 bits (240), Expect = 5e-26
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNK-QRSSETLGLNKTINYIQTD 102
+P L+ G + ++ GE+ IA+G+PL +T T G++S +R + G + IQTD
Sbjct: 116 KFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTD 175
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIEFL 146
AAI GNSGGPL+N+ GEVIGIN+ V + FAIPI+ +FL
Sbjct: 176 AAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 221
Score = 85.5 bits (210), Expect = 1e-21
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 2 PGVEKVTQDICLSTFSFNSLLTLPNIAYYFEKHIILFHCLQNNYPALKLGKAADIRNGEF 61
P + ++ + A ++ + + LG ++D+R G+
Sbjct: 52 PPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQGVSGLTPISLGSSSDLRVGQP 111
Query: 62 VIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKT----INYIQTDAAITFGNSGGPLVNL 117
V+A+GSPL L T T GI+S R T G ++ IQTDAAI GNSGG LVN+
Sbjct: 112 VLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNM 171
Query: 118 DGEVIGINSMKVTA------------GISFAIPIDYAIEFLTNYKRKGK 154
+ +++G+NS T G+ FAIP+D A GK
Sbjct: 172 NAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELISTGK 220
>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus,
strain k1 [TaxId: 1911]}
Length = 185
Score = 74.8 bits (183), Expect = 7e-18
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 43 NNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTD 102
+ AA+ G V GS G ++ + G + I+T+
Sbjct: 78 GTVGGQDITSAANATVGMAVTRRGSTTG----THSGSVTALNATVNYGGGDVVYGMIRTN 133
Query: 103 AAITFGNSGGPLVNLDGEVIGINSMKVT----AGISFAIPIDYAIE 144
G+SGGPL + IG+ S G +F P+ A+
Sbjct: 134 VCAEPGDSGGPLYS-GTRAIGLTSGGSGNCSSGGTTFFQPVTEALS 178
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C)
{Foot-and-mouth disease virus FMDV [TaxId: 12110]}
Length = 199
Score = 74.4 bits (182), Expect = 1e-17
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 45 YPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAA 104
A ++ G V+ + + + G + ++ + AA
Sbjct: 92 DITKHFRDTARMKKGTPVVGVVNNADVGRLIFSGEALTYKDIVVSMDGDTMPGLFAYKAA 151
Query: 105 ITFGNSGGPLV---NLDGEVIGINSMKVTAGISFAIPID 140
G +GG ++ D ++G +S G+ + +
Sbjct: 152 TRAGYAGGAVLAKDGADTFIVGTHSA-GGNGVGYCSCVS 189
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1
[TaxId: 1911]}
Length = 181
Score = 69.0 bits (168), Expect = 9e-16
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 44 NYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDA 103
N + A + G+ V GS L G ++ + IQT+
Sbjct: 75 NGSYQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNATVNYGSSGIVYGMIQTNV 130
Query: 104 AITFGNSGGPLVNLDGEVIGINS----MKVTAGISFAIPIDYAIE 144
G+SGG L +G+ S T G +F P+ A+
Sbjct: 131 CAQPGDSGGSLFA-GSTALGLTSGGSGNCRTGGTTFYQPVTEALS 174
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus
[TaxId: 1280]}
Length = 246
Score = 68.4 bits (166), Expect = 4e-15
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 17/131 (12%)
Query: 27 IAYYFEKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRS 86
+A K + + DI G+ +G P + + +
Sbjct: 115 LAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQ-------- 166
Query: 87 SETLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA-----GISFAIPIDY 141
+ N Q GNSG + NL GE+IGI+S K G+ F I
Sbjct: 167 ----SQIEMFNDSQYFGYTEVGNSGSGIFNLKGELIGIHSGKGGQHNLPIGVFFNRKISS 222
Query: 142 AIEFLTNYKRK 152
+
Sbjct: 223 LYSVDNTFGDT 233
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A
{Staphylococcus aureus [TaxId: 1280]}
Length = 242
Score = 64.6 bits (156), Expect = 1e-13
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 41 LQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQ 100
L + K+G + D+++G+ + +G P Q + L ++
Sbjct: 135 LGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVN---------QMHRSEIELTTLSRGLR 185
Query: 101 TDAAITFGNSGGPLVNLDGEVIGINSMKVT-----AGISFAIPI-DYAIEFL 146
GNSG + N +GE++GI+S KV+ I++ + I +Y +
Sbjct: 186 YYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGIGNYVKRII 237
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 62.0 bits (150), Expect = 6e-13
Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
Query: 26 NIAYYFEKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQR 85
+ +I+ ++ P + K + + E + + + T + S
Sbjct: 71 QQHLIDGRDMIIIRMPKDFPPFPQKLKFREPQREERICLVTTN-----FQTKSMSSMVSD 125
Query: 86 SSETLGLNKTINYIQTDAAITFGNSGGPLVNL-DGEVIGINSMKVTA---GISFAIPIDY 141
+S T + + + G G PLV+ DG ++GI+S ++P ++
Sbjct: 126 TSCTFPSSDG-IFWKHWIQTKDGQCGSPLVSTRDGFIVGIHSASNFTNTNNYFTSVPKNF 184
Query: 142 AIEFLTNYKRK 152
+E LTN + +
Sbjct: 185 -MELLTNQEAQ 194
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 60.7 bits (146), Expect = 1e-12
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 8/117 (6%)
Query: 35 IILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNK 94
+ Q P + G + G A+G+ + + T + T +
Sbjct: 66 WVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAE 125
Query: 95 TI--NYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA------GISFAIPIDYAI 143
Q +A + G+SGG + G+ G+ S GI +
Sbjct: 126 GAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGIPASQRSSLFE 182
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 210
Score = 60.2 bits (144), Expect = 3e-12
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 34 HIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLN 93
+L P + + G+ V+A+G+P L T T GIIS R L
Sbjct: 85 LAVLKINATGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRI--GLNPT 142
Query: 94 KTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTA--------GISFAIPIDYAIEF 145
N++QTDA+I GNSGG LVN GE++GIN++ GI FAIP A +
Sbjct: 143 GRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKI 202
Query: 146 LTNYKRKG 153
+ R G
Sbjct: 203 MDKLIRDG 210
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus
[TaxId: 1280]}
Length = 216
Score = 57.3 bits (137), Expect = 3e-11
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 97 NYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYAI-EFLTN 148
+Q D + T GNSG P+ N EVIGI+ V + A+ I+ + FL
Sbjct: 156 EAMQYDLSTTGGNSGSPVFNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQ 208
>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces
griseus [TaxId: 1911]}
Length = 187
Score = 55.0 bits (131), Expect = 2e-10
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 30 YFEKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSET 89
+ + + +G + + + T + T
Sbjct: 61 NDYGIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVT 120
Query: 90 LGLNKTI--NYIQTDAAITFGNSGGPLVNLDGEVIGINSMKV----TAGISFAIPIDYAI 143
+ N ++T A G+SGG +GI+S TAG + P+ A+
Sbjct: 121 VNYGDGPVYNMVRTTACSAGGDSGGAHFA-GSVALGIHSGSSGCSGTAGSAIHQPVTEAL 179
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius
[TaxId: 1400]}
Length = 215
Score = 38.9 bits (89), Expect = 1e-04
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 4/114 (3%)
Query: 29 YYFEKHIILFHCLQNNYPALKLGKAADIRNGEFVIAMGSPLTLNNTNTFGIISNKQRSSE 88
++ +I N + + G + G P + Q
Sbjct: 94 SQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTG----KVSQWEMS 149
Query: 89 TLGLNKTINYIQTDAAITFGNSGGPLVNLDGEVIGINSMKVTAGISFAIPIDYA 142
+ N GNSG +++ + +++G+++ + G P A
Sbjct: 150 GSVTREDTNLAYYTIDTFSGNSGSAMLDQNQQIVGVHNAGYSNGTINGGPKATA 203
>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human
rhinovirus 2 [TaxId: 12130]}
Length = 180
Score = 32.5 bits (74), Expect = 0.014
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 59 GEFVIAMGSPLTLNNTNTFGIISNKQRSSETLGLNKTINYIQTDAAITFGNSGGPLVNLD 118
+A+ + G + + L N+T ++ G GG L
Sbjct: 98 PNCNLALLANQPEPTIINVGDVVSYGNI--LLSGNQTARMLKYSYPTKSGYCGGVLYK-I 154
Query: 119 GEVIGINSM 127
G+V+GI+
Sbjct: 155 GQVLGIHVG 163
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2
[TaxId: 11060]}
Length = 150
Score = 28.5 bits (64), Expect = 0.22
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 108 GNSGGPLVNLDGEVIGI--NSMKVTAGI 133
G SG P+V+ G+V+G+ N + +G
Sbjct: 116 GTSGSPIVDKKGKVVGLYGNGVVTRSGA 143
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId:
11082]}
Length = 152
Score = 28.1 bits (63), Expect = 0.31
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 108 GNSGGPLVNLDGEVIGI 124
G SG P+V+ +G+VIG+
Sbjct: 115 GTSGSPIVDKNGDVIGL 131
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum)
[TaxId: 5507]}
Length = 224
Score = 26.2 bits (56), Expect = 2.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 107 FGNSGGPLVNLDGEVIGINS 126
G+SGGP+V+ +IG S
Sbjct: 177 QGDSGGPIVDSSNTLIGAVS 196
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 25.7 bits (55), Expect = 3.5
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 124 INSMKVTAGISFAIPIDYAIEFLTNYKRKGKF 155
+ + V I I+ + FL Y +K
Sbjct: 7 MRELHVKPSIDPKQEIEDRVNFLKQYVKKTGA 38
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 133
Score = 24.2 bits (52), Expect = 6.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 45 YPALKLGKAADIRNGEFV 62
YPA + A ++ E V
Sbjct: 6 YPATAVSVAKNLAANEPV 23
>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces
cerevisiae virus L-A [TaxId: 11008]}
Length = 651
Score = 24.6 bits (53), Expect = 8.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 32 EKHIILFHCLQNNYPALKLGKAADIR 57
+I F ++ YP L G AA I+
Sbjct: 319 LVNIPKFGSIRGRYPFLLSGDAALIQ 344
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus
aureus [TaxId: 1280]}
Length = 232
Score = 24.3 bits (53), Expect = 9.1
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 99 IQTDAAITFGNSG-GPLVNLDGEVIGINS 126
+ + GN G L DGEVI ++
Sbjct: 21 ATINELLEHGNLGIATLTGSDGEVIFLDG 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 623,175
Number of extensions: 26536
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 25
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)