Query psy2772
Match_columns 746
No_of_seqs 237 out of 638
Neff 2.5
Searched_HMMs 46136
Date Sat Aug 17 00:45:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099|consensus 100.0 2.2E-56 4.8E-61 481.5 5.8 165 227-404 227-396 (843)
2 PF00343 Phosphorylase: Carboh 100.0 5.7E-53 1.2E-57 465.8 0.8 155 227-402 117-276 (713)
3 TIGR02093 P_ylase glycogen/sta 100.0 3.2E-49 6.8E-54 439.9 4.2 156 228-404 201-361 (794)
4 PRK14985 maltodextrin phosphor 100.0 1.8E-48 3.9E-53 433.8 3.4 156 228-404 206-366 (798)
5 cd04300 GT1_Glycogen_Phosphory 100.0 9.7E-48 2.1E-52 428.6 4.3 156 228-404 204-364 (797)
6 PRK14986 glycogen phosphorylas 100.0 2.2E-46 4.8E-51 418.0 4.5 155 229-404 218-377 (815)
7 COG0058 GlgP Glucan phosphoryl 100.0 2.7E-37 5.9E-42 342.9 0.3 142 225-403 179-327 (750)
8 TIGR02094 more_P_ylases alpha- 99.8 2E-20 4.3E-25 205.2 2.8 131 227-402 88-222 (601)
9 cd04299 GT1_Glycogen_Phosphory 99.7 5.1E-18 1.1E-22 191.3 3.1 129 229-401 177-309 (778)
10 PRK11637 AmiB activator; Provi 96.5 0.075 1.6E-06 57.0 15.5 116 406-525 10-131 (428)
11 TIGR02168 SMC_prok_B chromosom 95.9 0.3 6.6E-06 55.9 16.9 25 544-568 816-840 (1179)
12 PRK11637 AmiB activator; Provi 95.9 0.62 1.4E-05 50.1 18.3 91 472-571 162-252 (428)
13 PF04111 APG6: Autophagy prote 95.7 0.21 4.5E-06 52.7 13.5 128 429-573 7-134 (314)
14 PF08317 Spc7: Spc7 kinetochor 95.5 0.48 1E-05 49.7 15.3 120 425-557 143-270 (325)
15 TIGR02169 SMC_prok_A chromosom 95.0 0.62 1.3E-05 53.9 15.6 22 562-583 465-486 (1164)
16 TIGR01843 type_I_hlyD type I s 94.8 1.3 2.7E-05 45.8 15.8 83 436-521 135-220 (423)
17 PHA02562 46 endonuclease subun 94.8 0.91 2E-05 49.3 15.5 91 431-521 255-354 (562)
18 PF09755 DUF2046: Uncharacteri 94.7 1 2.3E-05 48.4 15.2 100 427-526 73-189 (310)
19 PF09726 Macoilin: Transmembra 94.6 1.5 3.4E-05 51.1 17.4 145 420-577 476-644 (697)
20 PF10186 Atg14: UV radiation r 94.5 2.6 5.6E-05 41.8 16.7 92 426-521 16-108 (302)
21 PF07888 CALCOCO1: Calcium bin 94.5 2.4 5.2E-05 48.7 18.2 140 365-523 78-239 (546)
22 COG1196 Smc Chromosome segrega 94.5 0.72 1.6E-05 55.7 15.1 41 541-581 866-906 (1163)
23 KOG0161|consensus 94.4 0.83 1.8E-05 58.4 15.7 92 432-526 944-1035(1930)
24 COG1196 Smc Chromosome segrega 94.3 0.64 1.4E-05 56.1 14.0 97 425-522 187-285 (1163)
25 PF08317 Spc7: Spc7 kinetochor 94.2 2.2 4.7E-05 45.0 16.1 43 479-521 159-201 (325)
26 PHA02562 46 endonuclease subun 94.1 1.4 3.1E-05 47.9 15.0 113 435-560 303-415 (562)
27 PRK02224 chromosome segregatio 94.1 2.7 5.9E-05 48.5 18.0 97 418-517 259-362 (880)
28 TIGR00606 rad50 rad50. This fa 94.0 1.1 2.4E-05 54.8 15.4 146 429-578 693-862 (1311)
29 smart00787 Spc7 Spc7 kinetocho 93.9 1.2 2.5E-05 47.5 13.5 148 425-588 138-293 (312)
30 TIGR01843 type_I_hlyD type I s 93.9 1.4 3E-05 45.6 13.7 86 435-521 141-227 (423)
31 TIGR03185 DNA_S_dndD DNA sulfu 93.7 2.6 5.7E-05 47.9 16.8 139 429-585 382-521 (650)
32 PF00038 Filament: Intermediat 93.5 3 6.6E-05 42.4 15.4 115 438-574 18-132 (312)
33 PRK02224 chromosome segregatio 93.5 2.2 4.7E-05 49.3 15.9 83 436-518 218-300 (880)
34 PF04156 IncA: IncA protein; 93.5 2.1 4.5E-05 41.0 13.3 41 484-524 117-157 (191)
35 COG1579 Zn-ribbon protein, pos 93.5 2.1 4.5E-05 44.6 14.3 78 480-566 93-170 (239)
36 KOG1853|consensus 93.5 7.5 0.00016 41.8 18.3 122 432-563 46-172 (333)
37 PRK03918 chromosome segregatio 93.4 4.5 9.8E-05 46.5 18.1 76 441-516 629-706 (880)
38 PF00038 Filament: Intermediat 93.4 5.3 0.00012 40.7 16.8 83 474-565 207-289 (312)
39 PF04156 IncA: IncA protein; 93.2 5.5 0.00012 38.1 15.6 42 483-524 123-164 (191)
40 PRK09039 hypothetical protein; 93.1 2.7 5.8E-05 45.0 14.8 34 539-572 145-178 (343)
41 TIGR03017 EpsF chain length de 93.0 5.2 0.00011 42.6 16.6 69 426-495 166-234 (444)
42 KOG0971|consensus 92.8 1.9 4E-05 52.2 14.1 144 430-584 272-442 (1243)
43 PF12128 DUF3584: Protein of u 92.8 5.3 0.00012 48.9 18.3 92 430-524 735-836 (1201)
44 PRK04863 mukB cell division pr 92.3 2.3 5.1E-05 53.4 14.9 31 427-457 310-340 (1486)
45 PF14644 DUF4456: Domain of un 92.3 4.5 9.8E-05 40.4 14.2 114 451-572 35-161 (208)
46 PRK09841 cryptic autophosphory 92.0 5.7 0.00012 46.0 16.5 133 426-569 262-401 (726)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.0 8.6 0.00019 35.9 14.8 121 434-569 6-129 (132)
48 KOG0971|consensus 91.9 3.8 8.2E-05 49.8 15.1 80 438-517 332-416 (1243)
49 TIGR03007 pepcterm_ChnLen poly 91.8 5.9 0.00013 43.0 15.6 69 427-497 157-225 (498)
50 PRK11519 tyrosine kinase; Prov 91.7 6.7 0.00015 45.4 16.7 133 426-569 262-401 (719)
51 PF11559 ADIP: Afadin- and alp 91.6 7.3 0.00016 36.5 14.0 113 431-559 35-147 (151)
52 PRK04863 mukB cell division pr 91.4 4.2 9E-05 51.3 15.6 86 424-509 293-381 (1486)
53 TIGR01005 eps_transp_fam exopo 91.3 3.5 7.6E-05 47.3 13.8 62 504-568 345-406 (754)
54 KOG3156|consensus 91.3 1.5 3.3E-05 45.4 9.8 99 419-526 46-145 (220)
55 COG1579 Zn-ribbon protein, pos 91.2 7.1 0.00015 40.9 14.7 51 470-520 53-105 (239)
56 KOG0161|consensus 91.2 2.6 5.7E-05 54.2 13.8 181 392-580 814-1006(1930)
57 PF07888 CALCOCO1: Calcium bin 90.9 9 0.00019 44.3 16.4 48 474-521 218-265 (546)
58 PF07798 DUF1640: Protein of u 90.8 6.9 0.00015 38.1 13.4 84 477-568 52-136 (177)
59 PF15070 GOLGA2L5: Putative go 90.7 3.8 8.2E-05 47.5 13.4 141 433-576 31-205 (617)
60 PF10168 Nup88: Nuclear pore c 90.5 4.7 0.0001 47.4 14.1 81 480-569 583-663 (717)
61 PF12718 Tropomyosin_1: Tropom 90.4 2.5 5.5E-05 40.4 9.9 88 431-518 35-122 (143)
62 TIGR00606 rad50 rad50. This fa 90.2 8.9 0.00019 47.3 16.7 36 481-516 827-862 (1311)
63 PF09726 Macoilin: Transmembra 90.2 5.9 0.00013 46.5 14.5 134 435-581 457-641 (697)
64 KOG0240|consensus 89.6 6.1 0.00013 45.9 13.7 145 417-567 382-539 (607)
65 PRK09039 hypothetical protein; 89.3 24 0.00052 38.0 17.2 76 427-519 77-152 (343)
66 PRK11281 hypothetical protein; 89.2 12 0.00027 46.2 16.7 87 497-583 227-330 (1113)
67 COG5185 HEC1 Protein involved 88.8 16 0.00034 42.2 15.9 192 381-583 237-445 (622)
68 TIGR01010 BexC_CtrB_KpsE polys 88.7 8.3 0.00018 40.5 13.2 146 432-579 171-319 (362)
69 PRK10361 DNA recombination pro 88.6 7.6 0.00017 44.1 13.5 132 448-581 39-187 (475)
70 TIGR02971 heterocyst_DevB ABC 88.4 21 0.00045 36.6 15.4 54 470-523 105-161 (327)
71 PF12128 DUF3584: Protein of u 88.4 7.5 0.00016 47.6 14.2 39 570-609 522-560 (1201)
72 smart00787 Spc7 Spc7 kinetocho 88.2 15 0.00032 39.4 14.7 36 539-574 226-261 (312)
73 TIGR03017 EpsF chain length de 88.0 19 0.00042 38.4 15.5 114 440-567 256-371 (444)
74 TIGR01000 bacteriocin_acc bact 87.4 21 0.00045 39.0 15.6 48 475-522 211-261 (457)
75 TIGR01005 eps_transp_fam exopo 87.4 16 0.00034 42.2 15.3 24 542-565 356-379 (754)
76 COG2433 Uncharacterized conser 87.4 3.4 7.5E-05 48.1 10.0 99 416-521 414-514 (652)
77 PF01576 Myosin_tail_1: Myosin 87.4 0.18 3.8E-06 59.5 0.0 148 431-584 131-282 (859)
78 PF05266 DUF724: Protein of un 87.2 7.4 0.00016 39.1 11.1 102 418-522 63-177 (190)
79 TIGR02231 conserved hypothetic 87.2 2.8 6.1E-05 46.3 9.0 32 430-461 70-101 (525)
80 PF05701 WEMBL: Weak chloropla 87.1 18 0.00038 40.9 15.2 92 428-519 56-152 (522)
81 PF04111 APG6: Autophagy prote 87.1 11 0.00023 40.2 12.8 118 449-579 13-133 (314)
82 PF10473 CENP-F_leu_zip: Leuci 87.0 22 0.00048 34.7 13.8 73 435-517 7-79 (140)
83 PF09755 DUF2046: Uncharacteri 86.8 37 0.00081 37.1 16.6 83 430-521 105-202 (310)
84 PRK10929 putative mechanosensi 86.7 12 0.00025 46.5 14.4 115 468-582 172-309 (1109)
85 PF10168 Nup88: Nuclear pore c 86.5 22 0.00047 42.1 16.0 99 427-525 554-667 (717)
86 PF10498 IFT57: Intra-flagella 86.5 3.7 8.1E-05 44.7 9.3 93 434-526 216-323 (359)
87 PF14988 DUF4515: Domain of un 86.3 18 0.0004 36.7 13.4 138 429-573 38-198 (206)
88 PF13851 GAS: Growth-arrest sp 86.1 37 0.0008 34.2 15.3 130 424-565 41-170 (201)
89 TIGR03007 pepcterm_ChnLen poly 86.1 26 0.00056 38.2 15.4 67 497-566 317-383 (498)
90 KOG0995|consensus 85.8 36 0.00077 39.9 16.8 116 436-557 226-358 (581)
91 TIGR02680 conserved hypothetic 85.6 28 0.00061 43.6 17.1 109 417-525 276-389 (1353)
92 KOG0933|consensus 85.6 21 0.00046 44.1 15.5 104 422-525 229-343 (1174)
93 PF05701 WEMBL: Weak chloropla 85.2 30 0.00066 39.1 15.8 95 427-521 221-319 (522)
94 PRK10929 putative mechanosensi 84.8 8.4 0.00018 47.6 12.0 74 436-512 178-252 (1109)
95 cd09237 V_ScBro1_like Protein- 84.5 22 0.00048 37.9 13.7 149 426-578 75-231 (356)
96 PF01544 CorA: CorA-like Mg2+ 84.1 32 0.0007 33.8 13.7 61 428-500 115-175 (292)
97 TIGR00998 8a0101 efflux pump m 84.1 26 0.00055 35.8 13.4 105 413-521 63-170 (334)
98 PRK10476 multidrug resistance 83.8 37 0.0008 35.4 14.7 106 413-522 69-177 (346)
99 PF10186 Atg14: UV radiation r 83.4 39 0.00085 33.6 14.1 19 553-571 138-156 (302)
100 TIGR02680 conserved hypothetic 83.1 32 0.0007 43.2 16.1 30 543-572 926-955 (1353)
101 COG3206 GumC Uncharacterized p 82.3 26 0.00057 38.2 13.4 84 482-568 319-403 (458)
102 COG4372 Uncharacterized protei 82.1 49 0.0011 37.7 15.4 28 557-584 222-249 (499)
103 KOG0962|consensus 81.4 41 0.00089 42.6 15.9 227 338-572 75-345 (1294)
104 KOG1853|consensus 80.7 30 0.00066 37.4 12.8 82 433-514 61-157 (333)
105 COG0419 SbcC ATPase involved i 80.6 40 0.00088 40.2 15.2 37 415-451 282-318 (908)
106 PRK11281 hypothetical protein; 80.4 53 0.0011 41.0 16.4 31 554-584 222-252 (1113)
107 KOG0976|consensus 80.3 30 0.00065 42.2 13.7 36 412-448 252-287 (1265)
108 COG4942 Membrane-bound metallo 80.0 1.2E+02 0.0025 34.7 18.6 103 430-555 146-248 (420)
109 KOG0977|consensus 79.7 35 0.00077 39.7 13.8 93 423-524 35-133 (546)
110 KOG0963|consensus 79.6 51 0.0011 39.0 15.1 90 434-523 178-268 (629)
111 PRK10884 SH3 domain-containing 79.3 30 0.00065 35.3 11.8 34 488-521 137-170 (206)
112 PRK01156 chromosome segregatio 79.3 49 0.0011 39.0 15.1 95 460-567 651-748 (895)
113 PF10498 IFT57: Intra-flagella 79.2 38 0.00083 37.2 13.3 67 447-513 197-264 (359)
114 COG4942 Membrane-bound metallo 78.6 15 0.00032 41.4 10.2 87 483-581 38-127 (420)
115 PF13514 AAA_27: AAA domain 78.5 55 0.0012 40.0 15.6 45 419-463 731-775 (1111)
116 KOG0996|consensus 78.4 49 0.0011 41.7 15.0 88 434-521 861-966 (1293)
117 PF12325 TMF_TATA_bd: TATA ele 78.4 23 0.0005 33.6 10.0 51 472-526 40-90 (120)
118 PF01576 Myosin_tail_1: Myosin 78.3 0.68 1.5E-05 54.8 0.0 157 426-585 569-740 (859)
119 PF15619 Lebercilin: Ciliary p 77.2 87 0.0019 31.7 17.7 139 420-570 8-150 (194)
120 KOG0946|consensus 77.0 55 0.0012 40.0 14.6 81 506-586 808-889 (970)
121 PF15619 Lebercilin: Ciliary p 76.8 41 0.00089 34.0 11.9 125 428-563 58-189 (194)
122 PF10481 CENP-F_N: Cenp-F N-te 76.7 40 0.00086 36.7 12.3 94 433-526 20-131 (307)
123 KOG0249|consensus 76.5 69 0.0015 38.9 15.1 109 416-524 89-236 (916)
124 COG1842 PspA Phage shock prote 76.4 99 0.0022 32.1 14.7 25 540-564 115-139 (225)
125 PRK03598 putative efflux pump 76.4 46 0.001 34.5 12.5 51 471-521 116-169 (331)
126 PRK13729 conjugal transfer pil 76.2 60 0.0013 37.3 14.1 25 497-521 69-93 (475)
127 PF04012 PspA_IM30: PspA/IM30 76.0 85 0.0018 31.0 14.5 30 539-568 113-142 (221)
128 PF07058 Myosin_HC-like: Myosi 75.8 44 0.00096 36.9 12.5 32 473-504 70-101 (351)
129 PRK10246 exonuclease subunit S 75.6 1E+02 0.0022 37.8 16.8 101 425-525 718-843 (1047)
130 PF00261 Tropomyosin: Tropomyo 75.0 96 0.0021 31.5 14.0 38 484-521 121-158 (237)
131 KOG0239|consensus 74.9 71 0.0015 37.9 14.8 150 427-587 175-327 (670)
132 KOG4674|consensus 74.7 95 0.0021 40.8 16.6 116 434-559 1246-1374(1822)
133 PF11932 DUF3450: Protein of u 74.6 70 0.0015 32.5 13.0 124 428-572 32-155 (251)
134 COG3206 GumC Uncharacterized p 74.6 82 0.0018 34.5 14.4 95 430-524 238-333 (458)
135 PF10473 CENP-F_leu_zip: Leuci 74.6 67 0.0015 31.5 12.2 42 479-520 27-68 (140)
136 COG5185 HEC1 Protein involved 74.5 39 0.00084 39.2 12.1 85 472-570 274-362 (622)
137 PF09787 Golgin_A5: Golgin sub 74.4 45 0.00097 37.6 12.6 22 443-464 279-300 (511)
138 TIGR03794 NHPM_micro_HlyD NHPM 74.0 97 0.0021 33.5 14.5 37 415-452 81-117 (421)
139 PF00261 Tropomyosin: Tropomyo 73.9 1.1E+02 0.0023 31.2 14.6 93 472-570 137-229 (237)
140 TIGR03185 DNA_S_dndD DNA sulfu 73.7 1.1E+02 0.0024 35.2 15.7 48 474-521 207-254 (650)
141 PRK10884 SH3 domain-containing 73.5 34 0.00073 34.9 10.4 31 543-573 137-167 (206)
142 KOG4673|consensus 73.4 1E+02 0.0022 37.5 15.3 145 413-568 482-635 (961)
143 KOG0250|consensus 72.9 93 0.002 39.0 15.4 73 190-278 142-216 (1074)
144 PF09731 Mitofilin: Mitochondr 72.8 1.3E+02 0.0029 33.9 15.7 33 541-573 381-419 (582)
145 PF05667 DUF812: Protein of un 72.6 73 0.0016 37.3 14.0 35 428-462 325-359 (594)
146 KOG4460|consensus 72.5 11 0.00024 44.0 7.4 60 429-488 579-642 (741)
147 PF07889 DUF1664: Protein of u 72.3 65 0.0014 31.1 11.4 83 447-562 38-120 (126)
148 KOG0994|consensus 71.9 60 0.0013 41.2 13.5 80 426-520 1166-1248(1758)
149 KOG4674|consensus 71.8 56 0.0012 42.7 13.8 113 437-572 43-156 (1822)
150 cd07653 F-BAR_CIP4-like The F- 71.7 81 0.0018 31.5 12.5 92 474-574 103-194 (251)
151 PRK01156 chromosome segregatio 71.7 94 0.002 36.7 14.8 6 77-82 26-31 (895)
152 PF06013 WXG100: Proteins of 1 71.2 30 0.00065 27.6 7.8 69 442-511 15-86 (86)
153 TIGR01010 BexC_CtrB_KpsE polys 71.1 39 0.00084 35.7 10.6 108 412-523 182-297 (362)
154 PF10146 zf-C4H2: Zinc finger- 71.0 31 0.00068 35.8 9.7 14 505-518 89-102 (230)
155 PF05384 DegS: Sensor protein 70.9 87 0.0019 31.2 12.2 101 471-582 22-131 (159)
156 PF04849 HAP1_N: HAP1 N-termin 70.5 1.5E+02 0.0032 32.5 14.9 131 435-574 164-305 (306)
157 PF13863 DUF4200: Domain of un 70.4 83 0.0018 28.4 13.0 115 445-586 7-122 (126)
158 PF08826 DMPK_coil: DMPK coile 69.7 27 0.00058 30.0 7.4 47 478-524 13-59 (61)
159 TIGR02231 conserved hypothetic 68.9 10 0.00022 42.1 6.1 31 609-639 232-264 (525)
160 KOG0964|consensus 68.9 78 0.0017 39.5 13.5 87 356-452 118-212 (1200)
161 KOG0239|consensus 68.8 75 0.0016 37.7 13.2 43 476-518 175-217 (670)
162 PF14197 Cep57_CLD_2: Centroso 68.6 36 0.00078 29.6 8.1 43 482-524 25-67 (69)
163 KOG0240|consensus 68.5 78 0.0017 37.4 12.9 46 538-583 463-508 (607)
164 TIGR02473 flagell_FliJ flagell 67.2 37 0.0008 30.6 8.3 40 415-454 11-50 (141)
165 PRK04778 septation ring format 67.2 2.4E+02 0.0051 32.4 17.0 91 476-572 310-410 (569)
166 PF11932 DUF3450: Protein of u 66.8 49 0.0011 33.7 9.9 23 655-677 209-231 (251)
167 PF15070 GOLGA2L5: Putative go 66.7 2.2E+02 0.0047 33.7 16.2 28 461-488 145-172 (617)
168 COG0598 CorA Mg2+ and Co2+ tra 66.7 1.2E+02 0.0027 31.9 13.2 129 435-579 144-273 (322)
169 PF07798 DUF1640: Protein of u 66.3 67 0.0015 31.4 10.4 58 442-501 48-105 (177)
170 PRK11578 macrolide transporter 65.9 19 0.00041 37.9 7.1 35 391-425 57-94 (370)
171 TIGR00634 recN DNA repair prot 65.5 66 0.0014 36.5 11.6 48 436-483 268-315 (563)
172 KOG0995|consensus 65.3 88 0.0019 36.9 12.6 75 424-498 287-361 (581)
173 PRK00409 recombination and DNA 65.3 1.9E+02 0.0041 34.8 15.6 28 430-460 501-528 (782)
174 PRK13169 DNA replication intia 64.7 21 0.00045 33.6 6.4 45 478-522 10-54 (110)
175 cd07596 BAR_SNX The Bin/Amphip 64.6 76 0.0016 29.9 10.2 102 411-522 94-196 (218)
176 PRK00106 hypothetical protein; 64.5 1.8E+02 0.0038 34.0 14.8 42 486-527 121-162 (535)
177 KOG0612|consensus 64.5 96 0.0021 39.4 13.3 94 473-575 505-611 (1317)
178 PF04977 DivIC: Septum formati 64.3 20 0.00044 29.4 5.6 49 423-478 16-64 (80)
179 PF02841 GBP_C: Guanylate-bind 64.2 1.6E+02 0.0034 30.9 13.2 105 427-551 193-297 (297)
180 KOG0996|consensus 64.1 1.1E+02 0.0025 38.7 13.8 12 274-285 187-198 (1293)
181 PF14662 CCDC155: Coiled-coil 64.1 1.3E+02 0.0029 31.1 12.3 41 543-583 100-140 (193)
182 KOG0994|consensus 63.8 69 0.0015 40.7 11.9 49 471-519 1586-1634(1758)
183 PF12718 Tropomyosin_1: Tropom 63.7 1.4E+02 0.0031 28.7 14.4 44 478-521 23-66 (143)
184 KOG2129|consensus 63.6 1.3E+02 0.0029 34.7 13.2 36 485-520 181-224 (552)
185 KOG0964|consensus 63.5 76 0.0016 39.6 12.0 93 471-572 673-768 (1200)
186 PF07106 TBPIP: Tat binding pr 63.3 53 0.0011 31.5 9.0 25 500-524 112-136 (169)
187 cd00176 SPEC Spectrin repeats, 62.9 1.2E+02 0.0026 27.5 17.3 106 445-558 51-156 (213)
188 PF09177 Syntaxin-6_N: Syntaxi 62.6 26 0.00057 31.0 6.4 49 427-475 35-83 (97)
189 PRK11519 tyrosine kinase; Prov 62.5 67 0.0014 37.6 11.2 53 463-520 333-386 (719)
190 KOG4286|consensus 62.4 57 0.0012 39.7 10.6 51 638-692 914-966 (966)
191 KOG1899|consensus 62.3 3.6E+02 0.0078 32.8 17.6 34 712-745 411-444 (861)
192 TIGR02977 phageshock_pspA phag 62.0 1.8E+02 0.004 29.3 14.3 41 539-579 100-140 (219)
193 PF09738 DUF2051: Double stran 62.0 1.3E+02 0.0028 32.7 12.4 72 488-572 82-167 (302)
194 PF04012 PspA_IM30: PspA/IM30 61.9 1.7E+02 0.0037 28.9 15.1 45 472-516 26-70 (221)
195 PRK10361 DNA recombination pro 61.5 1.5E+02 0.0032 34.3 13.3 23 560-582 134-156 (475)
196 PF06008 Laminin_I: Laminin Do 61.5 1.9E+02 0.0042 29.6 13.1 54 471-524 82-140 (264)
197 TIGR03752 conj_TIGR03752 integ 61.4 42 0.0009 38.5 9.1 26 494-519 70-95 (472)
198 PF10146 zf-C4H2: Zinc finger- 61.2 1E+02 0.0022 32.2 11.1 17 478-494 48-64 (230)
199 KOG1029|consensus 61.2 2.1E+02 0.0045 35.5 14.7 144 428-584 328-497 (1118)
200 PRK09343 prefoldin subunit bet 61.2 1.2E+02 0.0026 28.4 10.6 110 468-585 6-118 (121)
201 PRK10780 periplasmic chaperone 61.1 1.2E+02 0.0025 29.3 10.9 56 412-467 24-79 (165)
202 PF13514 AAA_27: AAA domain 61.1 2E+02 0.0043 35.4 15.2 44 28-75 286-329 (1111)
203 PF14362 DUF4407: Domain of un 60.7 2.1E+02 0.0045 29.8 13.3 81 487-568 132-212 (301)
204 KOG0999|consensus 60.6 1.2E+02 0.0025 36.2 12.4 76 443-520 48-123 (772)
205 PF10234 Cluap1: Clusterin-ass 60.6 1.2E+02 0.0027 32.5 11.8 91 481-571 167-258 (267)
206 PF13166 AAA_13: AAA domain 60.4 1.6E+02 0.0036 33.5 13.5 13 509-521 389-401 (712)
207 PF03962 Mnd1: Mnd1 family; I 60.3 68 0.0015 32.1 9.5 20 353-372 29-48 (188)
208 KOG0993|consensus 59.4 1.1E+02 0.0025 35.1 11.8 33 431-463 100-132 (542)
209 PF14817 HAUS5: HAUS augmin-li 59.2 1.9E+02 0.0041 34.4 14.0 158 389-575 2-165 (632)
210 COG2433 Uncharacterized conser 58.9 58 0.0013 38.6 9.8 33 430-462 421-453 (652)
211 PF06156 DUF972: Protein of un 58.6 35 0.00077 31.8 6.7 48 477-524 9-56 (107)
212 COG0419 SbcC ATPase involved i 58.5 2.3E+02 0.005 34.1 14.8 42 543-584 401-442 (908)
213 PF14662 CCDC155: Coiled-coil 58.3 1.2E+02 0.0025 31.6 10.7 89 434-525 98-189 (193)
214 PF06785 UPF0242: Uncharacteri 58.2 86 0.0019 35.2 10.4 119 433-555 129-258 (401)
215 KOG0933|consensus 58.0 1.2E+02 0.0026 38.1 12.4 142 421-579 798-940 (1174)
216 PF14915 CCDC144C: CCDC144C pr 57.9 3E+02 0.0065 30.5 14.9 101 423-523 58-177 (305)
217 TIGR02977 phageshock_pspA phag 57.7 2.2E+02 0.0047 28.8 14.0 34 549-582 96-129 (219)
218 PF12805 FUSC-like: FUSC-like 57.7 1.6E+02 0.0034 30.5 11.8 174 405-581 94-283 (284)
219 PF08202 MIS13: Mis12-Mtw1 pro 57.6 2.1E+02 0.0046 30.5 13.0 90 425-514 158-263 (301)
220 PRK10869 recombination and rep 57.4 1.3E+02 0.0028 34.5 12.2 56 417-475 247-302 (553)
221 PRK10698 phage shock protein P 57.3 2.3E+02 0.005 29.0 14.1 40 540-579 101-140 (222)
222 PF05130 FlgN: FlgN protein; 57.3 58 0.0013 28.5 7.6 122 436-587 3-130 (143)
223 TIGR02971 heterocyst_DevB ABC 57.2 2.4E+02 0.0051 29.1 14.8 88 413-510 37-124 (327)
224 PF06008 Laminin_I: Laminin Do 57.0 2.4E+02 0.0051 29.0 16.4 51 475-525 145-206 (264)
225 PTZ00464 SNF-7-like protein; P 56.8 2.4E+02 0.0053 29.1 13.0 61 434-494 21-86 (211)
226 PF05622 HOOK: HOOK protein; 56.5 3.7 7.9E-05 47.4 0.0 144 434-583 196-349 (713)
227 PF04420 CHD5: CHD5-like prote 55.9 44 0.00096 32.5 7.2 52 472-525 36-87 (161)
228 PF03961 DUF342: Protein of un 55.6 46 0.00099 36.6 8.0 38 427-464 330-367 (451)
229 PF06160 EzrA: Septation ring 55.6 3.7E+02 0.0081 30.9 15.3 154 428-585 191-370 (560)
230 COG4372 Uncharacterized protei 55.6 66 0.0014 36.7 9.2 67 446-515 75-141 (499)
231 PF10174 Cast: RIM-binding pro 55.1 1.5E+02 0.0034 35.9 12.7 80 439-521 11-97 (775)
232 PF07926 TPR_MLP1_2: TPR/MLP1/ 54.9 1.9E+02 0.004 27.2 14.5 27 497-523 59-85 (132)
233 PF07989 Microtub_assoc: Micro 54.8 1.1E+02 0.0023 27.1 8.6 72 433-506 2-73 (75)
234 KOG0977|consensus 54.6 3.2E+02 0.0069 32.3 14.6 19 477-495 163-181 (546)
235 PF14389 Lzipper-MIP1: Leucine 54.3 27 0.00058 31.3 5.0 54 507-560 11-83 (88)
236 PRK15178 Vi polysaccharide exp 53.7 1.6E+02 0.0034 33.6 11.8 127 441-572 245-389 (434)
237 PF03148 Tektin: Tektin family 53.7 2.7E+02 0.0058 30.6 13.3 147 432-583 209-362 (384)
238 PF12329 TMF_DNA_bd: TATA elem 53.7 1.4E+02 0.0031 26.0 9.2 68 429-520 3-70 (74)
239 TIGR00634 recN DNA repair prot 53.5 1.4E+02 0.0031 33.8 11.6 52 432-486 285-339 (563)
240 PF06160 EzrA: Septation ring 53.5 3.4E+02 0.0073 31.3 14.6 37 543-579 456-492 (560)
241 PF13166 AAA_13: AAA domain 53.3 3.7E+02 0.0081 30.8 14.9 11 386-396 234-244 (712)
242 PF12325 TMF_TATA_bd: TATA ele 53.3 2.1E+02 0.0046 27.3 11.8 55 464-518 11-65 (120)
243 PRK10476 multidrug resistance 53.0 3E+02 0.0064 28.9 14.8 48 411-460 61-108 (346)
244 KOG3478|consensus 52.8 1.1E+02 0.0023 29.8 8.9 61 502-571 41-109 (120)
245 PF04977 DivIC: Septum formati 52.7 26 0.00056 28.8 4.4 34 484-517 18-51 (80)
246 TIGR00219 mreC rod shape-deter 52.5 55 0.0012 34.5 7.7 54 486-555 55-108 (283)
247 TIGR00383 corA magnesium Mg(2+ 52.5 2.8E+02 0.0061 28.5 13.4 130 426-579 137-269 (318)
248 PRK09841 cryptic autophosphory 52.3 1.2E+02 0.0026 35.6 11.1 54 463-520 333-386 (726)
249 KOG0972|consensus 52.2 57 0.0012 36.1 7.9 54 476-529 280-333 (384)
250 PF08614 ATG16: Autophagy prot 52.1 1.4E+02 0.003 29.6 10.0 48 478-525 97-144 (194)
251 TIGR01069 mutS2 MutS2 family p 52.1 2.8E+02 0.006 33.4 14.1 28 430-460 496-523 (771)
252 PF10458 Val_tRNA-synt_C: Valy 52.0 89 0.0019 26.3 7.5 59 435-493 1-63 (66)
253 PF04048 Sec8_exocyst: Sec8 ex 51.6 1.3E+02 0.0027 28.7 9.3 103 406-518 18-128 (142)
254 KOG0250|consensus 51.6 3.1E+02 0.0067 34.7 14.5 40 197-245 78-117 (1074)
255 PRK10246 exonuclease subunit S 51.6 3.9E+02 0.0084 33.1 15.5 27 434-460 619-645 (1047)
256 PF14712 Snapin_Pallidin: Snap 51.3 93 0.002 26.9 7.7 68 432-504 15-85 (92)
257 KOG0249|consensus 51.1 2.1E+02 0.0045 35.1 12.6 90 435-524 160-264 (916)
258 PF03938 OmpH: Outer membrane 51.1 2.1E+02 0.0045 26.6 12.4 59 411-469 16-74 (158)
259 KOG0243|consensus 50.9 3.5E+02 0.0076 34.2 14.8 87 429-522 402-494 (1041)
260 PF08614 ATG16: Autophagy prot 50.9 37 0.0008 33.5 5.8 86 435-520 28-118 (194)
261 PF04912 Dynamitin: Dynamitin 50.8 1.3E+02 0.0028 32.7 10.4 40 410-451 242-281 (388)
262 KOG1003|consensus 50.7 3.3E+02 0.007 28.7 13.9 148 434-596 7-167 (205)
263 PF14915 CCDC144C: CCDC144C pr 50.5 2E+02 0.0044 31.7 11.6 94 484-583 64-168 (305)
264 PF05700 BCAS2: Breast carcino 50.4 1.5E+02 0.0033 30.1 10.2 54 470-523 137-215 (221)
265 PF06705 SF-assemblin: SF-asse 50.1 2.6E+02 0.0057 28.5 11.9 91 435-525 31-142 (247)
266 KOG1962|consensus 50.0 89 0.0019 32.7 8.6 43 543-585 170-212 (216)
267 KOG1029|consensus 49.9 6.2E+02 0.013 31.8 16.5 92 477-570 407-518 (1118)
268 PRK13729 conjugal transfer pil 49.5 48 0.001 38.1 7.2 43 479-521 79-121 (475)
269 KOG4643|consensus 49.4 6E+02 0.013 32.5 16.2 48 416-463 393-450 (1195)
270 PRK00888 ftsB cell division pr 49.3 39 0.00085 31.1 5.4 46 433-478 29-74 (105)
271 PLN02939 transferase, transfer 49.1 1.8E+02 0.0039 36.3 12.2 47 479-525 197-254 (977)
272 PF09730 BicD: Microtubule-ass 48.8 5.8E+02 0.013 31.1 16.0 43 539-584 420-462 (717)
273 KOG2129|consensus 48.7 4.9E+02 0.011 30.5 14.5 92 410-506 182-283 (552)
274 PF05622 HOOK: HOOK protein; 48.3 5.9 0.00013 45.8 0.0 41 539-579 385-425 (713)
275 PRK04778 septation ring format 48.2 4.8E+02 0.01 30.0 16.5 40 201-245 23-69 (569)
276 KOG4302|consensus 48.2 1.9E+02 0.0042 34.7 11.8 139 417-585 4-143 (660)
277 KOG0963|consensus 48.2 3.9E+02 0.0084 32.2 14.1 70 479-557 252-336 (629)
278 PF09789 DUF2353: Uncharacteri 48.1 2.5E+02 0.0053 31.1 11.9 105 477-582 66-177 (319)
279 PF12777 MT: Microtubule-bindi 48.1 18 0.0004 38.4 3.6 73 479-578 238-310 (344)
280 PF11559 ADIP: Afadin- and alp 48.1 2.4E+02 0.0053 26.5 14.2 66 448-520 31-96 (151)
281 TIGR00998 8a0101 efflux pump m 47.3 1.4E+02 0.003 30.6 9.5 28 436-463 99-126 (334)
282 PF05557 MAD: Mitotic checkpoi 47.2 1.1E+02 0.0025 35.7 9.9 64 429-492 508-582 (722)
283 PRK15136 multidrug efflux syst 47.2 1.6E+02 0.0034 32.0 10.3 56 469-524 127-185 (390)
284 KOG0804|consensus 47.2 5E+02 0.011 30.4 14.4 30 543-572 419-448 (493)
285 cd07664 BAR_SNX2 The Bin/Amphi 47.2 3.4E+02 0.0074 28.3 12.3 50 472-521 129-183 (234)
286 TIGR00618 sbcc exonuclease Sbc 46.9 6.4E+02 0.014 31.0 18.1 41 542-582 532-572 (1042)
287 PF15456 Uds1: Up-regulated Du 46.0 1.2E+02 0.0027 29.0 8.3 89 425-525 23-116 (124)
288 PF07106 TBPIP: Tat binding pr 45.6 1.3E+02 0.0029 28.8 8.5 78 433-511 81-159 (169)
289 KOG0998|consensus 45.4 6.4E+02 0.014 31.0 15.8 84 541-624 557-642 (847)
290 PF00435 Spectrin: Spectrin re 45.3 1.6E+02 0.0035 23.7 11.9 64 439-502 2-67 (105)
291 PF13094 CENP-Q: CENP-Q, a CEN 45.0 1.4E+02 0.003 28.5 8.5 58 408-465 10-68 (160)
292 cd07666 BAR_SNX7 The Bin/Amphi 45.0 4E+02 0.0088 28.2 12.6 72 427-498 50-125 (243)
293 PF09728 Taxilin: Myosin-like 44.8 4.3E+02 0.0094 28.5 13.7 41 541-581 110-150 (309)
294 PF12761 End3: Actin cytoskele 44.7 3E+02 0.0066 28.6 11.3 84 468-560 95-182 (195)
295 PF05103 DivIVA: DivIVA protei 44.5 17 0.00037 32.6 2.3 41 428-468 22-62 (131)
296 KOG0612|consensus 44.0 4.1E+02 0.0088 34.3 14.0 38 542-579 599-636 (1317)
297 KOG4673|consensus 44.0 3.5E+02 0.0075 33.3 12.9 53 470-522 461-513 (961)
298 KOG4657|consensus 43.4 4.6E+02 0.0099 28.3 13.7 73 479-567 61-133 (246)
299 cd09236 V_AnPalA_UmRIM20_like 42.7 4.7E+02 0.01 28.3 15.1 94 480-577 131-224 (353)
300 PF10267 Tmemb_cc2: Predicted 42.6 3E+02 0.0065 31.1 11.7 110 425-565 206-318 (395)
301 smart00502 BBC B-Box C-termina 42.5 2.2E+02 0.0048 24.5 9.8 101 447-583 2-103 (127)
302 cd07654 F-BAR_FCHSD The F-BAR 42.4 3.4E+02 0.0075 28.7 11.6 64 478-546 112-178 (264)
303 TIGR03495 phage_LysB phage lys 42.4 1.2E+02 0.0025 29.8 7.6 70 440-509 21-94 (135)
304 PF14257 DUF4349: Domain of un 42.3 1E+02 0.0022 31.5 7.6 35 536-570 160-194 (262)
305 PF14988 DUF4515: Domain of un 42.2 4E+02 0.0087 27.3 13.7 83 471-553 42-129 (206)
306 PF04108 APG17: Autophagy prot 42.0 4.2E+02 0.009 29.5 12.7 134 435-574 238-382 (412)
307 PF13600 DUF4140: N-terminal d 42.0 28 0.00061 30.7 3.2 57 404-462 40-101 (104)
308 PF02050 FliJ: Flagellar FliJ 41.1 2.2E+02 0.0048 24.0 11.7 22 429-450 10-31 (123)
309 PF05308 Mito_fiss_reg: Mitoch 41.0 33 0.00073 36.1 4.1 30 463-496 113-142 (253)
310 PTZ00332 paraflagellar rod pro 40.9 6.9E+02 0.015 29.8 14.3 157 433-599 326-524 (589)
311 KOG4637|consensus 40.9 3.3E+02 0.0072 31.3 11.6 115 411-525 118-253 (464)
312 PF01496 V_ATPase_I: V-type AT 40.8 1.5E+02 0.0032 35.0 9.5 80 442-521 198-284 (759)
313 KOG0980|consensus 40.5 7.8E+02 0.017 31.1 15.3 142 423-566 400-554 (980)
314 TIGR03752 conj_TIGR03752 integ 40.4 6.6E+02 0.014 29.4 14.8 57 463-525 52-108 (472)
315 PF08172 CASP_C: CASP C termin 40.1 1.1E+02 0.0025 32.1 7.7 31 489-519 5-35 (248)
316 PF12777 MT: Microtubule-bindi 39.9 1.9E+02 0.0041 31.0 9.5 112 391-521 197-308 (344)
317 COG4026 Uncharacterized protei 39.7 2.4E+02 0.0053 30.5 10.0 68 488-568 140-207 (290)
318 PF05911 DUF869: Plant protein 39.7 3.7E+02 0.008 32.9 12.6 37 540-576 728-764 (769)
319 KOG4572|consensus 39.5 3.6E+02 0.0079 33.8 12.3 112 473-589 992-1115(1424)
320 KOG2629|consensus 39.3 1.8E+02 0.0039 32.0 9.2 68 441-521 125-192 (300)
321 TIGR01069 mutS2 MutS2 family p 39.2 2.2E+02 0.0047 34.3 10.6 27 429-455 513-539 (771)
322 PF06295 DUF1043: Protein of u 39.0 72 0.0016 30.1 5.6 18 448-465 28-45 (128)
323 KOG4643|consensus 38.5 4.1E+02 0.0089 33.8 12.8 47 410-463 250-296 (1195)
324 TIGR01730 RND_mfp RND family e 38.2 1.6E+02 0.0035 29.5 8.1 28 497-524 102-129 (322)
325 PF05667 DUF812: Protein of un 38.2 7.5E+02 0.016 29.4 16.8 7 201-207 197-203 (594)
326 PF13747 DUF4164: Domain of un 38.2 3.1E+02 0.0067 24.9 10.1 47 479-525 35-81 (89)
327 COG3096 MukB Uncharacterized p 38.2 2.8E+02 0.0061 34.5 11.2 102 468-583 552-661 (1480)
328 TIGR00996 Mtu_fam_mce virulenc 37.9 4.6E+02 0.01 26.8 15.1 34 428-463 131-164 (291)
329 PF03961 DUF342: Protein of un 37.6 1.3E+02 0.0029 33.1 8.1 32 434-465 330-361 (451)
330 PF10211 Ax_dynein_light: Axon 37.5 85 0.0018 31.4 6.1 32 432-463 121-152 (189)
331 COG0497 RecN ATPase involved i 37.5 4E+02 0.0086 31.6 12.1 58 416-476 247-304 (557)
332 KOG0018|consensus 37.4 2E+02 0.0043 36.4 10.0 95 417-524 803-897 (1141)
333 COG1463 Ttg2C ABC-type transpo 37.4 5.6E+02 0.012 27.7 13.7 37 422-460 134-170 (359)
334 KOG0980|consensus 37.0 9.5E+02 0.021 30.4 15.3 18 284-301 227-244 (980)
335 PF00846 Hanta_nucleocap: Hant 36.8 2E+02 0.0043 32.9 9.3 26 498-523 3-28 (428)
336 PF14735 HAUS4: HAUS augmin-li 36.7 1.2E+02 0.0026 31.9 7.2 52 445-496 185-236 (238)
337 PF09304 Cortex-I_coil: Cortex 36.7 45 0.00098 31.7 3.8 42 541-582 19-60 (107)
338 cd07651 F-BAR_PombeCdc15_like 36.4 4.6E+02 0.01 26.4 15.1 29 497-525 150-178 (236)
339 PF10475 DUF2450: Protein of u 36.3 5.3E+02 0.011 27.0 13.4 31 491-521 54-84 (291)
340 TIGR00618 sbcc exonuclease Sbc 36.2 9.1E+02 0.02 29.7 15.7 11 300-310 182-192 (1042)
341 PF14992 TMCO5: TMCO5 family 35.8 2.9E+02 0.0064 30.1 10.0 119 419-561 44-174 (280)
342 smart00806 AIP3 Actin interact 35.5 7E+02 0.015 28.8 13.2 31 475-505 154-184 (426)
343 PF01920 Prefoldin_2: Prefoldi 35.5 2.7E+02 0.0059 24.0 8.2 73 429-501 10-94 (106)
344 TIGR02338 gimC_beta prefoldin, 35.3 3.5E+02 0.0076 24.6 12.2 101 468-576 2-105 (110)
345 TIGR01000 bacteriocin_acc bact 35.1 6.6E+02 0.014 27.8 17.6 17 471-487 142-158 (457)
346 PF07111 HCR: Alpha helical co 35.1 9.5E+02 0.021 29.6 16.5 23 435-457 475-497 (739)
347 PF15254 CCDC14: Coiled-coil d 34.8 3.4E+02 0.0073 33.6 11.1 28 539-566 530-557 (861)
348 KOG0742|consensus 34.7 3.8E+02 0.0083 31.6 11.1 66 422-487 99-180 (630)
349 KOG0243|consensus 34.5 7.5E+02 0.016 31.5 14.2 47 474-521 481-527 (1041)
350 PRK00409 recombination and DNA 34.5 2.8E+02 0.0061 33.4 10.6 31 428-458 517-547 (782)
351 TIGR00020 prfB peptide chain r 34.5 5.9E+02 0.013 28.5 12.3 53 433-485 9-65 (364)
352 cd09234 V_HD-PTP_like Protein- 34.4 6.1E+02 0.013 27.2 14.8 92 480-576 128-219 (337)
353 KOG4593|consensus 34.2 5.4E+02 0.012 31.5 12.5 82 489-572 502-596 (716)
354 KOG0979|consensus 34.0 3.6E+02 0.0078 34.1 11.4 37 539-575 686-722 (1072)
355 PF06120 Phage_HK97_TLTM: Tail 33.8 3.9E+02 0.0084 29.3 10.6 23 493-515 130-152 (301)
356 PF13805 Pil1: Eisosome compon 33.7 1.5E+02 0.0032 32.0 7.5 30 431-460 131-160 (271)
357 TIGR01541 tape_meas_lam_C phag 33.3 6.9E+02 0.015 27.5 12.6 26 499-524 81-106 (332)
358 KOG0978|consensus 33.1 9.9E+02 0.022 29.3 15.9 37 31-67 51-87 (698)
359 KOG4571|consensus 33.0 4.7E+02 0.01 28.9 11.0 34 395-428 143-176 (294)
360 PF13949 ALIX_LYPXL_bnd: ALIX 33.0 5.4E+02 0.012 26.2 15.4 87 479-570 80-169 (296)
361 PRK14136 recX recombination re 32.9 2.7E+02 0.0058 30.8 9.3 101 419-524 165-268 (309)
362 PF13801 Metal_resist: Heavy-m 32.7 3.1E+02 0.0066 23.2 10.4 63 499-570 54-116 (125)
363 cd07685 F-BAR_Fes The F-BAR (F 32.7 1.9E+02 0.004 30.9 7.9 59 438-523 98-157 (237)
364 KOG0946|consensus 32.7 7.8E+02 0.017 31.0 13.6 24 497-520 737-760 (970)
365 cd07665 BAR_SNX1 The Bin/Amphi 32.6 3.2E+02 0.007 28.6 9.5 51 471-521 128-183 (234)
366 PRK10869 recombination and rep 32.5 3.5E+02 0.0075 31.2 10.6 27 419-445 210-236 (553)
367 PLN02678 seryl-tRNA synthetase 32.3 2.9E+02 0.0063 31.5 9.8 59 468-526 32-107 (448)
368 KOG1760|consensus 32.3 53 0.0011 32.3 3.6 57 411-478 65-121 (131)
369 COG0497 RecN ATPase involved i 32.2 4.4E+02 0.0095 31.2 11.3 153 421-579 212-388 (557)
370 PF00769 ERM: Ezrin/radixin/mo 32.0 6.1E+02 0.013 26.5 12.8 37 536-572 73-109 (246)
371 PF09787 Golgin_A5: Golgin sub 31.9 8.2E+02 0.018 27.9 18.6 35 449-484 159-193 (511)
372 KOG1937|consensus 31.5 8.4E+02 0.018 28.8 13.1 40 542-581 383-425 (521)
373 PRK06975 bifunctional uroporph 31.5 6.9E+02 0.015 29.6 12.9 132 425-571 358-501 (656)
374 PF08336 P4Ha_N: Prolyl 4-Hydr 31.4 4.3E+02 0.0093 24.6 9.3 79 431-510 15-116 (134)
375 KOG3595|consensus 31.3 2.1E+02 0.0045 36.6 9.3 34 545-578 990-1023(1395)
376 PF07200 Mod_r: Modifier of ru 31.3 4.5E+02 0.0096 24.7 11.0 25 561-585 98-122 (150)
377 PF14257 DUF4349: Domain of un 31.2 2E+02 0.0043 29.3 7.7 21 435-455 136-156 (262)
378 PF13094 CENP-Q: CENP-Q, a CEN 31.2 4.7E+02 0.01 25.0 9.7 49 471-519 22-70 (160)
379 PRK10865 protein disaggregatio 31.1 2.5E+02 0.0054 34.0 9.6 54 432-494 411-464 (857)
380 PF01017 STAT_alpha: STAT prot 31.1 5.3E+02 0.012 25.5 12.4 84 428-515 13-100 (182)
381 PRK03947 prefoldin subunit alp 31.0 4.4E+02 0.0096 24.5 9.5 23 435-457 24-46 (140)
382 PF15030 DUF4527: Protein of u 30.9 2E+02 0.0044 31.2 7.8 50 470-519 17-66 (277)
383 smart00502 BBC B-Box C-termina 30.9 3.5E+02 0.0075 23.3 12.9 27 436-462 5-31 (127)
384 PF04871 Uso1_p115_C: Uso1 / p 30.9 5E+02 0.011 25.1 12.2 82 473-573 31-112 (136)
385 cd07686 F-BAR_Fer The F-BAR (F 30.8 4.4E+02 0.0095 27.8 10.1 94 431-524 87-185 (234)
386 TIGR00996 Mtu_fam_mce virulenc 30.7 6E+02 0.013 26.0 12.9 20 569-588 269-288 (291)
387 TIGR03319 YmdA_YtgF conserved 30.7 9E+02 0.019 28.0 15.1 45 485-529 99-143 (514)
388 PF09325 Vps5: Vps5 C terminal 30.6 3.7E+02 0.0081 26.2 9.1 102 411-522 112-214 (236)
389 TIGR00293 prefoldin, archaeal 30.6 2.2E+02 0.0049 25.8 7.2 19 438-456 20-38 (126)
390 PF05911 DUF869: Plant protein 30.6 8.4E+02 0.018 30.0 13.6 125 443-567 83-226 (769)
391 PF10805 DUF2730: Protein of u 30.5 1.6E+02 0.0034 27.1 6.1 52 427-481 45-98 (106)
392 KOG3156|consensus 30.4 4.6E+02 0.0099 28.0 10.1 133 334-521 30-191 (220)
393 PF13815 Dzip-like_N: Iguana/D 30.2 2.6E+02 0.0056 25.9 7.6 90 419-517 10-114 (118)
394 KOG0976|consensus 30.2 1.1E+03 0.024 29.9 14.3 187 385-579 61-283 (1265)
395 PF06632 XRCC4: DNA double-str 30.1 66 0.0014 35.3 4.3 51 433-483 139-205 (342)
396 PRK14127 cell division protein 30.0 4.2E+02 0.0091 25.2 8.9 38 488-525 28-65 (109)
397 TIGR00019 prfA peptide chain r 30.0 6.7E+02 0.015 28.1 11.8 78 454-558 16-95 (360)
398 PF14362 DUF4407: Domain of un 29.8 6.6E+02 0.014 26.2 11.4 70 433-502 137-215 (301)
399 PF05791 Bacillus_HBL: Bacillu 29.7 1E+02 0.0023 30.5 5.3 19 444-462 102-120 (184)
400 TIGR02209 ftsL_broad cell divi 29.7 1.3E+02 0.0029 25.4 5.3 45 433-478 26-70 (85)
401 PF13125 DUF3958: Protein of u 29.7 5E+02 0.011 24.8 10.9 74 481-566 18-98 (99)
402 PF05761 5_nucleotid: 5' nucle 29.7 1.1E+02 0.0024 34.7 6.0 53 413-466 298-356 (448)
403 KOG1666|consensus 29.6 6.2E+02 0.013 27.0 10.9 29 552-580 153-181 (220)
404 PRK05431 seryl-tRNA synthetase 29.6 6.1E+02 0.013 28.4 11.5 49 451-501 12-60 (425)
405 PRK13922 rod shape-determining 29.5 1.4E+02 0.0029 30.7 6.2 25 497-521 69-93 (276)
406 PF05010 TACC: Transforming ac 29.3 6.7E+02 0.015 26.1 14.4 146 428-578 41-194 (207)
407 KOG0972|consensus 29.2 4.4E+02 0.0095 29.6 10.1 61 461-521 279-352 (384)
408 KOG2185|consensus 29.1 2.3E+02 0.005 32.7 8.3 58 434-498 416-473 (486)
409 KOG3705|consensus 28.9 57 0.0012 37.5 3.6 93 421-521 30-126 (580)
410 KOG1265|consensus 28.8 4.5E+02 0.0096 33.3 10.9 100 483-585 1056-1165(1189)
411 PF04102 SlyX: SlyX; InterPro 28.8 1.6E+02 0.0035 25.2 5.6 33 492-524 20-52 (69)
412 KOG3759|consensus 28.4 3.9E+02 0.0084 31.5 9.9 58 551-619 226-283 (621)
413 PF09731 Mitofilin: Mitochondr 28.1 9.3E+02 0.02 27.4 16.7 23 542-564 330-357 (582)
414 PRK04325 hypothetical protein; 28.1 3.2E+02 0.007 23.9 7.4 34 491-524 24-57 (74)
415 COG4026 Uncharacterized protei 27.8 3.6E+02 0.0079 29.2 9.0 68 431-522 135-202 (290)
416 TIGR00999 8a0102 Membrane Fusi 27.6 2.9E+02 0.0063 27.1 7.9 39 483-521 37-78 (265)
417 cd00890 Prefoldin Prefoldin is 27.6 96 0.0021 27.7 4.2 62 400-465 59-121 (129)
418 PRK10636 putative ABC transpor 27.3 3.6E+02 0.0078 31.3 9.6 28 434-461 559-586 (638)
419 KOG2273|consensus 27.1 9.2E+02 0.02 27.0 14.0 144 424-582 333-487 (503)
420 PF02994 Transposase_22: L1 tr 27.0 1.9E+02 0.0042 31.7 7.2 35 543-577 156-190 (370)
421 PF03962 Mnd1: Mnd1 family; I 27.0 6.7E+02 0.014 25.3 10.7 109 462-584 54-167 (188)
422 PF00769 ERM: Ezrin/radixin/mo 27.0 7.4E+02 0.016 25.9 11.1 30 431-460 5-34 (246)
423 PF02183 HALZ: Homeobox associ 27.0 1.6E+02 0.0035 23.9 4.9 35 480-521 2-36 (45)
424 PF05227 CHASE3: CHASE3 domain 26.7 4.4E+02 0.0096 23.2 11.6 51 446-496 14-66 (138)
425 KOG2264|consensus 26.7 4.4E+02 0.0096 31.9 10.1 67 483-565 82-148 (907)
426 PF02601 Exonuc_VII_L: Exonucl 26.7 7.5E+02 0.016 25.8 13.1 17 299-315 24-40 (319)
427 PRK02119 hypothetical protein; 26.6 4E+02 0.0087 23.4 7.7 41 473-524 17-57 (73)
428 PF07111 HCR: Alpha helical co 26.6 8.5E+02 0.018 30.0 12.5 110 468-577 161-274 (739)
429 KOG2264|consensus 26.5 3.6E+02 0.0077 32.6 9.4 43 483-525 107-149 (907)
430 COG3096 MukB Uncharacterized p 26.5 6.2E+02 0.013 31.8 11.4 106 417-522 355-467 (1480)
431 cd07657 F-BAR_Fes_Fer The F-BA 26.4 7.5E+02 0.016 25.7 12.5 90 473-571 102-191 (237)
432 PF03114 BAR: BAR domain; Int 26.1 5.5E+02 0.012 24.0 12.8 66 499-572 90-155 (229)
433 PF00435 Spectrin: Spectrin re 26.0 3.5E+02 0.0076 21.8 9.3 34 468-501 72-105 (105)
434 KOG4403|consensus 26.0 9.5E+02 0.021 28.4 12.3 114 419-564 247-380 (575)
435 PF15066 CAGE1: Cancer-associa 25.9 3.7E+02 0.0079 31.6 9.2 47 409-455 425-477 (527)
436 PF06120 Phage_HK97_TLTM: Tail 25.9 9.2E+02 0.02 26.6 12.0 70 434-503 84-154 (301)
437 PRK05771 V-type ATP synthase s 25.7 3.2E+02 0.007 31.6 9.0 54 468-521 214-270 (646)
438 PF14282 FlxA: FlxA-like prote 25.7 2.4E+02 0.0052 25.9 6.5 26 470-495 45-70 (106)
439 PRK10807 paraquat-inducible pr 25.6 6.2E+02 0.013 29.4 11.1 24 498-521 501-524 (547)
440 PRK12705 hypothetical protein; 25.6 1.1E+03 0.025 27.5 16.9 42 485-526 93-134 (508)
441 PF05816 TelA: Toxic anion res 25.5 8.7E+02 0.019 26.2 12.9 123 430-584 33-155 (333)
442 PRK00591 prfA peptide chain re 25.5 8.8E+02 0.019 27.2 11.8 58 449-521 10-69 (359)
443 PF10481 CENP-F_N: Cenp-F N-te 25.2 3.7E+02 0.0081 29.7 8.7 32 541-572 102-133 (307)
444 PF07889 DUF1664: Protein of u 25.2 6.4E+02 0.014 24.5 11.3 85 479-579 39-123 (126)
445 PF06637 PV-1: PV-1 protein (P 24.9 9.7E+02 0.021 27.8 12.0 101 426-526 199-321 (442)
446 PF09789 DUF2353: Uncharacteri 24.9 6.7E+02 0.014 27.8 10.6 27 496-522 132-158 (319)
447 PF03980 Nnf1: Nnf1 ; InterPr 24.9 4.3E+02 0.0093 23.8 7.9 29 490-518 80-108 (109)
448 KOG0288|consensus 24.9 8E+02 0.017 28.6 11.4 21 555-575 100-120 (459)
449 KOG4005|consensus 24.7 2.8E+02 0.0061 30.2 7.6 56 468-523 89-144 (292)
450 PF12761 End3: Actin cytoskele 24.6 3.5E+02 0.0075 28.2 8.0 83 439-521 97-184 (195)
451 TIGR01730 RND_mfp RND family e 24.6 4.1E+02 0.009 26.6 8.5 15 412-426 46-60 (322)
452 PRK05729 valS valyl-tRNA synth 24.5 2.4E+02 0.0052 34.0 7.9 59 436-494 809-871 (874)
453 PF03978 Borrelia_REV: Borreli 24.4 6.5E+02 0.014 25.8 9.6 74 444-521 24-98 (160)
454 PRK13182 racA polar chromosome 24.1 2.8E+02 0.006 27.9 7.1 21 496-516 124-144 (175)
455 PRK12704 phosphodiesterase; Pr 23.9 1.2E+03 0.026 27.1 15.1 131 428-574 50-181 (520)
456 PF10458 Val_tRNA-synt_C: Valy 23.9 3.9E+02 0.0084 22.5 6.9 48 469-516 4-65 (66)
457 PF09304 Cortex-I_coil: Cortex 23.9 6.3E+02 0.014 24.4 8.9 69 446-517 10-78 (107)
458 cd07656 F-BAR_srGAP The F-BAR 23.9 3.6E+02 0.0077 28.1 8.0 47 477-523 111-157 (241)
459 COG4678 Muramidase (phage lamb 23.7 1.5E+02 0.0033 30.5 5.2 97 406-523 69-174 (180)
460 PF09728 Taxilin: Myosin-like 23.6 9.6E+02 0.021 26.0 15.0 90 424-523 174-270 (309)
461 PF05557 MAD: Mitotic checkpoi 23.6 69 0.0015 37.4 3.3 63 433-498 366-428 (722)
462 PF15188 CCDC-167: Coiled-coil 23.6 1.1E+02 0.0025 28.0 3.9 52 434-499 8-59 (85)
463 PF06705 SF-assemblin: SF-asse 23.5 8.1E+02 0.017 25.1 15.6 132 430-563 77-222 (247)
464 smart00150 SPEC Spectrin repea 23.5 4E+02 0.0086 21.5 7.5 27 468-494 69-95 (101)
465 PLN02320 seryl-tRNA synthetase 23.3 5.6E+02 0.012 29.9 10.1 74 468-573 92-165 (502)
466 COG3524 KpsE Capsule polysacch 23.3 6.8E+02 0.015 28.3 10.3 94 438-546 223-319 (372)
467 PF10174 Cast: RIM-binding pro 23.2 1.5E+03 0.032 28.0 16.2 24 496-519 435-458 (775)
468 PF09730 BicD: Microtubule-ass 23.2 1.3E+03 0.027 28.4 13.2 80 436-521 357-436 (717)
469 COG3707 AmiR Response regulato 23.2 1.9E+02 0.004 30.1 5.8 51 405-457 104-154 (194)
470 KOG0978|consensus 23.1 1.5E+03 0.032 27.9 15.4 155 418-578 434-606 (698)
471 PF07200 Mod_r: Modifier of ru 23.1 6.3E+02 0.014 23.7 9.1 34 481-514 53-86 (150)
472 PF05400 FliT: Flagellar prote 22.9 4.3E+02 0.0093 21.7 7.7 67 501-575 8-78 (84)
473 TIGR00237 xseA exodeoxyribonuc 22.9 1.1E+03 0.024 26.4 12.9 16 299-314 139-154 (432)
474 PF02090 SPAM: Salmonella surf 22.9 7.2E+02 0.016 25.2 9.4 86 485-582 18-103 (147)
475 KOG1737|consensus 22.8 6.7E+02 0.015 31.1 11.0 30 543-572 288-317 (799)
476 PF05278 PEARLI-4: Arabidopsis 22.7 5.7E+02 0.012 27.9 9.4 87 483-582 159-251 (269)
477 PF10211 Ax_dynein_light: Axon 22.7 8E+02 0.017 24.7 10.0 28 543-570 161-188 (189)
478 PF13747 DUF4164: Domain of un 22.6 1.1E+02 0.0024 27.7 3.6 67 436-506 6-72 (89)
479 COG1842 PspA Phage shock prote 22.4 9.1E+02 0.02 25.3 13.8 34 549-582 96-129 (225)
480 PRK11147 ABC transporter ATPas 22.3 2.9E+02 0.0064 31.8 7.8 16 125-140 340-356 (635)
481 PF08606 Prp19: Prp19/Pso4-lik 22.2 5.8E+02 0.013 23.0 7.8 45 477-521 23-67 (70)
482 PF05546 She9_MDM33: She9 / Md 21.9 9.4E+02 0.02 25.4 10.5 70 446-516 10-79 (207)
483 COG3937 Uncharacterized conser 21.9 2.8E+02 0.0061 26.7 6.3 25 497-521 83-107 (108)
484 KOG2391|consensus 21.8 2.6E+02 0.0056 31.6 6.8 43 477-522 229-278 (365)
485 KOG4593|consensus 21.6 1.6E+03 0.034 27.8 15.0 57 491-557 238-294 (716)
486 PF15188 CCDC-167: Coiled-coil 21.6 1.3E+02 0.0028 27.7 3.8 59 445-518 5-64 (85)
487 PF15393 DUF4615: Domain of un 21.6 1.4E+02 0.0031 28.9 4.4 37 542-578 2-45 (124)
488 PRK04406 hypothetical protein; 21.3 5.8E+02 0.013 22.6 8.0 41 473-524 19-59 (75)
489 PF10828 DUF2570: Protein of u 21.3 6.5E+02 0.014 23.2 8.4 55 506-573 27-81 (110)
490 TIGR01844 type_I_sec_TolC type 21.3 6.5E+02 0.014 26.0 9.3 36 439-474 128-163 (415)
491 PF08172 CASP_C: CASP C termin 21.2 7.2E+02 0.016 26.3 9.7 33 428-460 3-35 (248)
492 KOG0018|consensus 21.2 1.4E+03 0.03 29.5 13.3 43 191-233 77-124 (1141)
493 TIGR03545 conserved hypothetic 21.2 5.7E+02 0.012 30.0 9.7 124 409-555 141-272 (555)
494 COG3883 Uncharacterized protei 21.1 9.5E+02 0.021 26.2 10.6 78 424-504 134-211 (265)
495 PRK07720 fliJ flagellar biosyn 21.1 5.8E+02 0.013 23.8 8.2 36 419-454 18-53 (146)
496 PF06188 HrpE: HrpE/YscL/FliH 21.0 8.6E+02 0.019 24.5 10.4 86 428-525 42-129 (191)
497 PRK06569 F0F1 ATP synthase sub 21.0 8.5E+02 0.019 24.4 12.7 86 469-572 48-134 (155)
498 KOG3091|consensus 21.0 1.1E+03 0.024 28.0 11.7 140 413-573 354-498 (508)
499 PF02321 OEP: Outer membrane e 20.9 5.6E+02 0.012 22.3 9.9 71 433-503 117-187 (188)
500 KOG4809|consensus 20.8 1.6E+03 0.034 27.4 14.6 121 429-571 378-519 (654)
No 1
>KOG2099|consensus
Probab=100.00 E-value=2.2e-56 Score=481.49 Aligned_cols=165 Identities=38% Similarity=0.508 Sum_probs=153.4
Q ss_pred hcccccccCCcceeEEeecc--CCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHH
Q psy2772 227 LKRHLVELEKQVSITFNLTE--RNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 304 (746)
Q Consensus 227 ~~~~v~Gye~~~vNtLRLwe--sseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQ 304 (746)
...||.||++.++||||||. +..+|||..||.|+|+.|+..++.||+||+||||||++.+||+||||||||+|||+||
T Consensus 227 YD~PvPGyk~n~vntlRLWsaka~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLq 306 (843)
T KOG2099|consen 227 YDTPVPGYKNNTVNTLRLWSAKAPNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQ 306 (843)
T ss_pred cCCCCCCcccCcceeeeeeccCCCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHH
Confidence 45789999999999999994 5778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---E
Q psy2772 305 VISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---L 381 (746)
Q Consensus 305 DIIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~ 381 (746)
|||||||.+.. ++ -+.+...|++||+|||||+|||||+||||||||||+|.+|++|++| |+|| |
T Consensus 307 DIirRFk~sk~---~~--------r~~~~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~A--Wdit~kT~ 373 (843)
T KOG2099|consen 307 DIIRRFKSSKF---GC--------REPVRTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKA--WDITQKTC 373 (843)
T ss_pred HHHHHHhhccc---Cc--------ccccccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHH--HHHhhhhe
Confidence 99999998763 21 2457788999999999999999999999999999999999999999 9998 9
Q ss_pred eeecccccccccccccccccccc
Q psy2772 382 LEVYRLGGPLACGPWKVHAELPI 404 (746)
Q Consensus 382 aYTNHTILpEALEkWpv~~~l~i 404 (746)
||||||+||||||+||+++.--+
T Consensus 374 AYTNHTVlpEALErWp~~L~e~L 396 (843)
T KOG2099|consen 374 AYTNHTVLPEALERWPVSLMEKL 396 (843)
T ss_pred eeccccccHHHHHHhhHHHHHHh
Confidence 99999999999999999886443
No 2
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=5.7e-53 Score=465.82 Aligned_cols=155 Identities=32% Similarity=0.469 Sum_probs=139.1
Q ss_pred hcccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHH
Q psy2772 227 LKRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 304 (746)
Q Consensus 227 ~~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQ 304 (746)
..++|+||+++++|||||| +++++||++.||.|+|.+|+++++.+|+||+||||||++++||+|||||||||||||||
T Consensus 117 yD~pi~Gy~~~~vn~LRLw~a~~~~~fd~~~fn~gdy~~a~~~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lq 196 (713)
T PF00343_consen 117 YDMPIPGYRTKTVNTLRLWSAEPSEEFDLESFNRGDYIKAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQ 196 (713)
T ss_dssp EEEEEE-SSSS-EEEEEEEEEEESSSTTHHHHHTTCHHHHHHHHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeecCCCCceEEEEEeccCCCcccChhhcCCCcHHHHHHHHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHH
Confidence 4689999999999999999 57999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---E
Q psy2772 305 VISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---L 381 (746)
Q Consensus 305 DIIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~ 381 (746)
|||++|++.+.+ |++||++++||||||||+|+|||+||+|||++|++|++| |+|| |
T Consensus 197 diir~~~~~~~~-------------------~~~~~~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA--~eiv~~~~ 255 (713)
T PF00343_consen 197 DIIRRFKKSHGD-------------------LREFPDKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEA--WEIVRKTF 255 (713)
T ss_dssp HHHHHHHHTTCC-------------------GGGHHHHEEEEEESSTTTTHHHHHHHHHHHTT---HHHH--HHHHHHHE
T ss_pred HHHHHHHHhCCC-------------------hHHCCcceEEeecCCccHHHHHHHHHHHHHHcCCCHHHH--HHHHHhce
Confidence 999999999964 455699999999999999999999999999999999999 9999 9
Q ss_pred eeecccccccccccccccccc
Q psy2772 382 LEVYRLGGPLACGPWKVHAEL 402 (746)
Q Consensus 382 aYTNHTILpEALEkWpv~~~l 402 (746)
+|||||++|||||+||+++..
T Consensus 256 ~fTnHT~vpealE~wp~~l~~ 276 (713)
T PF00343_consen 256 AFTNHTPVPEALEKWPVDLFE 276 (713)
T ss_dssp EEEE--SSGGGS-EEEHHHHH
T ss_pred eeeccccccccccccCHHHHH
Confidence 999999999999999998864
No 3
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=3.2e-49 Score=439.89 Aligned_cols=156 Identities=31% Similarity=0.442 Sum_probs=147.9
Q ss_pred cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772 228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV 305 (746)
Q Consensus 228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD 305 (746)
.++|+||+++++|+|||| ++.+.||++.||.|+|.+|++++..+|+||+||||+|++++||+|||||||||||||+||
T Consensus 201 D~pi~Gy~~~~vn~LRLW~a~~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqd 280 (794)
T TIGR02093 201 DVPVPGYRTDTVNTLRLWSAEAPEEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQD 280 (794)
T ss_pred ceeecCCCCCceEEEEEEEecCccccCHhhccCccHhhhhhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHH
Confidence 688999999999999999 567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772 306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL 382 (746)
Q Consensus 306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a 382 (746)
|||+|++.+.+ |+.||++++||||||||+|+||||||+|+|++|++|++| |+|| |+
T Consensus 281 iir~~~~~~~~-------------------l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~A--w~iv~~~~~ 339 (794)
T TIGR02093 281 IIRRHLETHPD-------------------LSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEA--WDITTKTFA 339 (794)
T ss_pred HHHHHHHhCCC-------------------hhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHH--HHHHHhhee
Confidence 99999998853 556699999999999999999999999999999999999 9998 99
Q ss_pred eecccccccccccccccccccc
Q psy2772 383 EVYRLGGPLACGPWKVHAELPI 404 (746)
Q Consensus 383 YTNHTILpEALEkWpv~~~l~i 404 (746)
|||||++|||||+||+++...+
T Consensus 340 yTnHT~lpealE~wp~~l~~~~ 361 (794)
T TIGR02093 340 YTNHTLLPEALEKWPVDLFQKL 361 (794)
T ss_pred cccCCCChHHhCCcCHHHHHHH
Confidence 9999999999999999887543
No 4
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=1.8e-48 Score=433.78 Aligned_cols=156 Identities=27% Similarity=0.420 Sum_probs=147.7
Q ss_pred cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772 228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV 305 (746)
Q Consensus 228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD 305 (746)
.++|+||+++++|+|||| ++.++||+..||.|||.+|++++..+|+||+||||+|++++||+|||||||||||||+||
T Consensus 206 Dvpi~Gy~~~~~n~LRLW~a~~~~~~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqd 285 (798)
T PRK14985 206 DLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVAD 285 (798)
T ss_pred cccccCCCCCceEEEEEeEcCCCCccCHHHcCCcchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999 467799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772 306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL 382 (746)
Q Consensus 306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a 382 (746)
|||+|++.+.+ |+.||++++||||||||+|+||||||+|+|++|++|++| |+|| |+
T Consensus 286 ilr~~~~~~~~-------------------l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~A--w~iv~~~~~ 344 (798)
T PRK14985 286 ILRRHHLAGRK-------------------LHELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDA--WAITSKTFA 344 (798)
T ss_pred HHHHHHhcCCC-------------------hhhCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHhee
Confidence 99999997753 456699999999999999999999999999999999999 9999 99
Q ss_pred eecccccccccccccccccccc
Q psy2772 383 EVYRLGGPLACGPWKVHAELPI 404 (746)
Q Consensus 383 YTNHTILpEALEkWpv~~~l~i 404 (746)
|||||++|||||+||+++...+
T Consensus 345 yTnHT~lpealE~w~~~l~~~~ 366 (798)
T PRK14985 345 YTNHTLMPEALECWDEKLVKSL 366 (798)
T ss_pred eecCCCChhhhCCCCHHHHHHH
Confidence 9999999999999999887644
No 5
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=9.7e-48 Score=428.56 Aligned_cols=156 Identities=33% Similarity=0.455 Sum_probs=148.2
Q ss_pred cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772 228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV 305 (746)
Q Consensus 228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD 305 (746)
.++|+||+++++|+|||| ++.+.||+..||+|+|.++++++..+|+||+||||+||+++||+|||||||||||||+||
T Consensus 204 Dvpi~Gy~~~~~n~LRLW~a~~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qd 283 (797)
T cd04300 204 DTPIPGYGTNTVNTLRLWSAEASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQD 283 (797)
T ss_pred ceeecCCCCCceEEEEEEEeeCCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHH
Confidence 489999999999999999 578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772 306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL 382 (746)
Q Consensus 306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a 382 (746)
||++|++.+.+ ++.||++++||||||||+|+||||||+|+|++|++|++| |+|| |+
T Consensus 284 ilr~~~~~~~~-------------------~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~A--w~i~~~~~~ 342 (797)
T cd04300 284 IIRRFKKTHGP-------------------LSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEA--WDITTKTFA 342 (797)
T ss_pred HHHHHHHhCCC-------------------hhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHH--HHHHHhhee
Confidence 99999999864 456799999999999999999999999999999999999 9998 99
Q ss_pred eecccccccccccccccccccc
Q psy2772 383 EVYRLGGPLACGPWKVHAELPI 404 (746)
Q Consensus 383 YTNHTILpEALEkWpv~~~l~i 404 (746)
|||||++|||||+||+++...+
T Consensus 343 yTnHT~lpealE~wp~~l~~~~ 364 (797)
T cd04300 343 YTNHTLLPEALEKWPVDLFERL 364 (797)
T ss_pred eecCCCchHHhCccCHHHHHHH
Confidence 9999999999999999887544
No 6
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=2.2e-46 Score=418.01 Aligned_cols=155 Identities=27% Similarity=0.425 Sum_probs=147.1
Q ss_pred ccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHHH
Q psy2772 229 RHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI 306 (746)
Q Consensus 229 ~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQDI 306 (746)
++|+||+++++|+|||| ++.++||++.||.|+|..++.+++.+|+||+||||+|++|+||+|||||||||||||+|||
T Consensus 218 ~pipgy~t~~vn~lRLW~a~~~~~fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di 297 (815)
T PRK14986 218 QIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDI 297 (815)
T ss_pred ccccCCCCCceEEEEEEEeecCcccCHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHH
Confidence 47999999999999999 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Eee
Q psy2772 307 SLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LLE 383 (746)
Q Consensus 307 IRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~aY 383 (746)
||+|++.+.+ ++.||++++||||||||+++||||||+|+|++|++|++| |+|| |+|
T Consensus 298 ~r~~~~~~~~-------------------l~~l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA--~~iv~~~~~f 356 (815)
T PRK14986 298 LSRHYQLHKT-------------------YDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDA--FEVCCQVFSY 356 (815)
T ss_pred HHHHHHhCCC-------------------HhhCCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHH--HHHHHhhEEe
Confidence 9999998863 456699999999999999999999999999999999999 9999 999
Q ss_pred ecccccccccccccccccccc
Q psy2772 384 VYRLGGPLACGPWKVHAELPI 404 (746)
Q Consensus 384 TNHTILpEALEkWpv~~~l~i 404 (746)
||||++|||+|+||+++...+
T Consensus 357 TnHT~lpealE~w~~~l~~~~ 377 (815)
T PRK14986 357 TNHTLMSEALETWPVDMLGKI 377 (815)
T ss_pred ecccCChHHhCcCCHHHHHHH
Confidence 999999999999999887544
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=342.88 Aligned_cols=142 Identities=26% Similarity=0.320 Sum_probs=128.3
Q ss_pred HHhcccccccCCcceeEEeec--cCCC-CCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhh
Q psy2772 225 EELKRHLVELEKQVSITFNLT--ERNE-KIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAA 301 (746)
Q Consensus 225 ~~~~~~v~Gye~~~vNtLRLw--esse-eFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSA 301 (746)
..++++|+||++ .+|+|||| ++.. +|+|..||.| ++...+++||+||||+|| ++|||+||||||||
T Consensus 179 ~~~d~~V~g~~~-~~~~lrlW~a~~~~~~~~l~~~n~~------e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~a 247 (750)
T COG0058 179 VPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVG------ENKNDARNITRVLYPGDS----KELRLKQEYFLGSA 247 (750)
T ss_pred ceeeeeEEeccC-cEEEEEEEEEecCccceEeecCCCc------ccchhhhhHHhhcCCCCc----HHHHHhhhheeeeH
Confidence 467899999999 88999999 5666 8999999999 788899999999999999 99999999999999
Q ss_pred hHHHHHHHH-HHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE
Q psy2772 302 TLQVISLPF-KDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS 380 (746)
Q Consensus 302 SLQDIIRrf-Kkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt 380 (746)
|+|+|++++ ++.+ + ++.+ ++| ||||||+++||||||+|+|++|++|++| |+|+
T Consensus 248 gvq~I~~~~~~~~~-~--------~~~~-----------~~~----lNdtHpa~~i~ElmRll~d~~g~~~~~A--~~~~ 301 (750)
T COG0058 248 GVQDILARGHLEHH-D--------LDVL-----------ADH----LNDTHPALAIPELMRLLIDEEGLSWDEA--WEIV 301 (750)
T ss_pred HHHHHHHHhhhccc-c--------ccch-----------hhh----hcCCChhHhHHHHHHHHHHHhcCCHHHH--HHHH
Confidence 999999995 5555 4 3334 555 9999999999999999999999999999 9998
Q ss_pred ---Eeeeccccccccccccccccccc
Q psy2772 381 ---LLEVYRLGGPLACGPWKVHAELP 403 (746)
Q Consensus 381 ---~aYTNHTILpEALEkWpv~~~l~ 403 (746)
|+|||||++|||+|+||+++..-
T Consensus 302 ~~~~~yTnHTplpeale~wp~~l~~~ 327 (750)
T COG0058 302 RKTFVYTNHTPLPEALETWPVELFKK 327 (750)
T ss_pred hheeeeecCCCchhhhccCCHHHHHH
Confidence 99999999999999999998654
No 8
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.79 E-value=2e-20 Score=205.17 Aligned_cols=131 Identities=13% Similarity=0.137 Sum_probs=110.8
Q ss_pred hcccccccCCcceeEEeeccC-CCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772 227 LKRHLVELEKQVSITFNLTER-NEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV 305 (746)
Q Consensus 227 ~~~~v~Gye~~~vNtLRLwes-seeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD 305 (746)
..+++.| .++++|||.. .+.|++-.|+.++ .++....++||.+|||+| +.+|++|||||++|++++
T Consensus 88 ~~v~i~g----~~~~~rlw~~~~~~v~lylld~~~----~~n~~~~R~it~~LY~~D-----~~~R~~Qe~fl~~a~l~~ 154 (601)
T TIGR02094 88 ISVRIRG----RDVYAKVWRVQVGRVPLYLLDTNI----PENSEDDRWITGRLYGGD-----KEMRIAQEIVLGIGGVRA 154 (601)
T ss_pred EEEecCC----cEEEEEEEEEEeCCCCEEEecCCC----cccchhhcCccCCCCCCC-----HHHHHHHHHHHHHHHHHH
Confidence 3466666 4699999954 3568888888776 556677899999999988 789999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772 306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL 382 (746)
Q Consensus 306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a 382 (746)
|- +-+ -++.+||+||+||+|+++||||+|+ ++++.|++| |+|+ |.
T Consensus 155 l~----~l~-------------------------~~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a--~~~~~~~~v 202 (601)
T TIGR02094 155 LR----ALG-------------------------IDPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEA--WEAVRKSSL 202 (601)
T ss_pred HH----HcC-------------------------CCceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHH--HHhcCCeEE
Confidence 82 111 1568999999999999999999999 789999999 8875 99
Q ss_pred eecccccccccccccccccc
Q psy2772 383 EVYRLGGPLACGPWKVHAEL 402 (746)
Q Consensus 383 YTNHTILpEALEkWpv~~~l 402 (746)
||+||+.++++|+||+++..
T Consensus 203 fTiHt~~~qG~e~f~~~~~~ 222 (601)
T TIGR02094 203 FTTHTPVPAGHDVFPEDLMR 222 (601)
T ss_pred EeCCCchHHHhhhcCHHHHH
Confidence 99999999999999987764
No 9
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.69 E-value=5.1e-18 Score=191.26 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=108.1
Q ss_pred ccccccCCcceeEEeeccC-CCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHHHH
Q psy2772 229 RHLVELEKQVSITFNLTER-NEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVIS 307 (746)
Q Consensus 229 ~~v~Gye~~~vNtLRLwes-seeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQDII 307 (746)
+++.|+. .++|+|.+ ...+++-.|+.+.| ++....+.||.+|||+| +.+||+|||||+.|+++.|
T Consensus 177 v~l~g~~----v~~rvw~~~vg~v~lylLDtd~~----~n~~~~R~iT~~LYg~D-----~~~Rl~Qe~~Lg~agl~~L- 242 (778)
T cd04299 177 VELPGRT----VYARVWKAQVGRVPLYLLDTDIP----ENSPDDRGITDRLYGGD-----QETRIQQEILLGIGGVRAL- 242 (778)
T ss_pred EeeCCCc----eEEEEEEEEcCCCCEEEecCCcc----ccchhhcccccCCCCCc-----HHHHHHHHHHHHHHHHHHH-
Confidence 6666643 57999954 34588888888876 44556689999999987 7899999999999999987
Q ss_pred HHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Eeee
Q psy2772 308 LPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LLEV 384 (746)
Q Consensus 308 RrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~aYT 384 (746)
+.+ + + ++.+||+||+||+|+++|+||+|++++|++|++| |+++ |.||
T Consensus 243 r~l---g---------------------~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A--~e~vr~~tvFT 292 (778)
T cd04299 243 RAL---G---------------------I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEA--LEAVRASTVFT 292 (778)
T ss_pred HHh---C---------------------C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHH--HHhhCCeEEEe
Confidence 432 2 1 3579999999999999999999998889999999 8865 9999
Q ss_pred ccccccccccccccccc
Q psy2772 385 YRLGGPLACGPWKVHAE 401 (746)
Q Consensus 385 NHTILpEALEkWpv~~~ 401 (746)
+||+.++++|.||.++.
T Consensus 293 tHTpvpqG~d~Fp~~l~ 309 (778)
T cd04299 293 THTPVPAGHDRFPPDLV 309 (778)
T ss_pred cCCchHHHhhhCCHHHH
Confidence 99999999999998877
No 10
>PRK11637 AmiB activator; Provisional
Probab=96.53 E-value=0.075 Score=56.96 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=60.4
Q ss_pred cCCCCcceeeecchhhhhhhhhhhhhh------hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHH
Q psy2772 406 VRPVSPIRIRIGVMIHAISRDQIASKL------HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQR 479 (746)
Q Consensus 406 vrp~~p~ri~e~d~d~klSr~ce~dKi------lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQr 479 (746)
.|.+||-|.++.-+... +.+|-.-=+ -.+++.++++++++++++++-+..+..++.... ..++.+..|-.
T Consensus 10 ~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~---~~l~~l~~qi~ 85 (428)
T PRK11637 10 TRAVKPRRFAIRPILYA-SVLSAGVLLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLL---AQLKKQEEAIS 85 (428)
T ss_pred cccccchhhhhhhHHHH-HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 35677777776654433 223311111 134566666666666666666666665554322 22444444445
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
.++++|..+..+|+..-++++.+=.+...+|.++..++..|..+++
T Consensus 86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555554443
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.88 E-value=0.3 Score=55.91 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 544 EAELRRVQALVGDLQRQRQELSAQV 568 (746)
Q Consensus 544 ekELwRIQdVvggLsrQRqeLs~qV 568 (746)
+.++..++.-+..|.++.+++..++
T Consensus 816 ~~~l~~~~~~~~~l~~~~~~l~~~~ 840 (1179)
T TIGR02168 816 NEEAANLRERLESLERRIAATERRL 840 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333344333333333333
No 12
>PRK11637 AmiB activator; Provisional
Probab=95.87 E-value=0.62 Score=50.12 Aligned_cols=91 Identities=23% Similarity=0.280 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQ 551 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQ 551 (746)
..+...+..+=+++...+.+|...-++||+..++...+..++..-+..|+.+...... ..+.|++++...+
T Consensus 162 ~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~---------~l~~L~~~~~~~~ 232 (428)
T PRK11637 162 GYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKK---------TLTGLESSLQKDQ 232 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 3444455556667777777777777777777777777777777777777766643221 3445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2772 552 ALVGDLQRQRQELSAQVKQL 571 (746)
Q Consensus 552 dVvggLsrQRqeLs~qVrqL 571 (746)
..+..|+++.+.|......|
T Consensus 233 ~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 233 QQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555655555555555544
No 13
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.67 E-value=0.21 Score=52.68 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=54.4
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR 508 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR 508 (746)
.|.++..++..+..++.|++.....|..+. ...+.+...+.+...-..|++|-.....+|...-++-++..+|-..
T Consensus 7 ~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 7 TDLLLEQLDKQLEQAEKERDTYQEFLKKLE----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp ---------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999998887 2223345555555555556666666666665555555555555555
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 509 LESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTE 573 (746)
Q Consensus 509 LE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~ 573 (746)
||.+...|.+.-..-. .+...++.++-+.++-...|..|.+-.+++++.|..
T Consensus 83 le~e~~~l~~eE~~~~-------------~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 83 LEEELEELDEEEEEYW-------------REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555543322111 144557777777777777777777777777777753
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.47 E-value=0.48 Score=49.72 Aligned_cols=120 Identities=20% Similarity=0.232 Sum_probs=68.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH----HHHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE----VERYRRQQRLL----ERELSRVRSILAHNS 496 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~----~EKi~~QQrlL----E~eLsrVRaeLSrnS 496 (746)
|+.-.+-|...++..+..|+.|+..|...+..+..-+....+--+. +..++.....+ +.+|...|.+|+...
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~ 222 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQK 222 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence 4455666777778888888888888877776665543333222111 11111112212 245666666666666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDL 557 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggL 557 (746)
.+++.-=.+.+.|+.++..+++++.+--. ++..++.|+...+.+.+..
T Consensus 223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~-------------~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 223 EEIEAKKKELAELQEELEELEEKIEELEE-------------QKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666653321 5555666666666655543
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.99 E-value=0.62 Score=53.90 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhccccccccc
Q psy2772 562 QELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 562 qeLs~qVrqLt~~s~~l~~qi~ 583 (746)
.++..+...+.+....+..++.
T Consensus 465 ~~~~~~l~~~~~~l~~l~~~l~ 486 (1164)
T TIGR02169 465 SKYEQELYDLKEEYDRVEKELS 486 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555554
No 16
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.82 E-value=1.3 Score=45.81 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHH
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESE 512 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~E 512 (746)
.+..+..++..++.|+..+..+..++++... .++.+..|...+++++.+....+.+. ..+++.+-.++..++.+
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~---~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~ 211 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQA---QLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGE 211 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhH
Confidence 3344445555566666666666666555442 34455556666666666665555542 34555555555555555
Q ss_pred HHHHHHHHH
Q psy2772 513 LVVLRQKLQ 521 (746)
Q Consensus 513 V~~LRqkLQ 521 (746)
+..++..+.
T Consensus 212 l~~~~~~l~ 220 (423)
T TIGR01843 212 LGRLEAELE 220 (423)
T ss_pred HHHHHHHHH
Confidence 555555544
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.81 E-value=0.91 Score=49.27 Aligned_cols=91 Identities=9% Similarity=0.168 Sum_probs=51.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhH--h----hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRH--K----MHGVHASPAEVERYRRQQRLLERELSRVRSILAHN---SKKLEE 501 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~q--q----ME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~ 501 (746)
..|++++..+..++.+.+.++..+.-.+. . -....+.|..++.+..|..-|+.+|..+...++.. -.++.+
T Consensus 255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~ 334 (562)
T PHA02562 255 AALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE 334 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555555555521 0 01112238888888888888888888888877733 333444
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q psy2772 502 TVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 502 twaEyaRLE~EV~~LRqkLQ 521 (746)
.-....+|++.+..+|..+.
T Consensus 335 ~~~~i~el~~~i~~~~~~i~ 354 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLI 354 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445545544444443
No 18
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.68 E-value=1 Score=48.42 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=59.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHH--------HHHHHHHhHhhhccCCChHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEML--------ENALGSLRHKMHGVHASPAEVERYRRQ-----QRLLERELSRVRSILA 493 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~L--------EsAL~~L~qqME~~~dqPa~~EKi~~Q-----QrlLE~eLsrVRaeLS 493 (746)
+|--.|-..|=.+|++|+.+|+.| |..-..|..+|.+-++-...+|..-.| =..|+..|.+.+.+..
T Consensus 73 qEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~ 152 (310)
T PF09755_consen 73 QEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS 152 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333445555556777888888877 444455666777776666666555443 2356666666666666
Q ss_pred hhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhh
Q psy2772 494 HNSKKLEETVAANARL----ESELVVLRQKLQWSRRE 526 (746)
Q Consensus 494 rnSkELE~twaEyaRL----E~EV~~LRqkLQaQr~~ 526 (746)
...++||+--+|--.| |+|=+.|=++||-||..
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555444 44444555555555543
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.56 E-value=1.5 Score=51.15 Aligned_cols=145 Identities=22% Similarity=0.249 Sum_probs=107.6
Q ss_pred hhhhhhhhhhhh-hhhhhhhhhhhhhhhHHHHHHHHHHHhHh--hhc-cCCCh---------HHHHHHHHHHHHHHHHHH
Q psy2772 420 IHAISRDQIASK-LHSRGRNICSVQGQAKEMLENALGSLRHK--MHG-VHASP---------AEVERYRRQQRLLERELS 486 (746)
Q Consensus 420 d~klSr~ce~dK-ilqelE~kLq~Lk~DKD~LEsAL~~L~qq--ME~-~~dqP---------a~~EKi~~QQrlLE~eLs 486 (746)
.+.|.+-+.+|| -|+.+|.+|...++-|-.||+=|.--+.. .+. -...| ...|..+.-.+.||.|+.
T Consensus 476 l~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~ 555 (697)
T PF09726_consen 476 LQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELK 555 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHH
Confidence 356788888998 57899999999999999999999887754 222 22334 566777888899999999
Q ss_pred HHHHHHHhh---hHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHH----HHHHHHHHHHH
Q psy2772 487 RVRSILAHN---SKKLEETVAANARL----ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALE----AELRRVQALVG 555 (746)
Q Consensus 487 rVRaeLSrn---SkELE~twaEyaRL----E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLe----kELwRIQdVvg 555 (746)
+.|.+|-.- .-+||.-..++-.. +.|.+.|..+|++-.+. ++.|| .|=|==+||..
T Consensus 556 ~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk-------------~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 556 KLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK-------------NQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHH
Confidence 999999754 45677766666665 66889999988876552 33344 45455578888
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q psy2772 556 DLQRQRQELSAQVKQLTEKSNS 577 (746)
Q Consensus 556 gLsrQRqeLs~qVrqLt~~s~~ 577 (746)
.|-.-|.+|..+-.+|..+-..
T Consensus 623 aLg~akrq~ei~~~~~~~~d~e 644 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKE 644 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777755443
No 20
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.54 E-value=2.6 Score=41.76 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=64.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhH-hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRH-KMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~q-qME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa 504 (746)
-|...+ +-++...|+.++.+++.|..-++.+=. .+.. +....+..+.+...++..+..+|..+.+.-+++++.=+
T Consensus 16 ~C~~~~-L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 16 NCVNNR-LLELRSELQQLKEENEELRRRIEEILESDSNG---QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666 666777777777777776654333221 1212 56677777778888888888888888888888888887
Q ss_pred HHhhhHHHHHHHHHHHH
Q psy2772 505 ANARLESELVVLRQKLQ 521 (746)
Q Consensus 505 EyaRLE~EV~~LRqkLQ 521 (746)
....+-..+...++.|.
T Consensus 92 ~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 92 RLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777776
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.50 E-value=2.4 Score=48.71 Aligned_cols=140 Identities=17% Similarity=0.115 Sum_probs=77.9
Q ss_pred cccCcccccceeEEEEEeeeccccccccccccccccccccccCCCCccee--------eecchhh----------hhhhh
Q psy2772 365 PRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRI--------RIGVMIH----------AISRD 426 (746)
Q Consensus 365 de~gl~wdeAv~wdIt~aYTNHTILpEALEkWpv~~~l~irvrp~~p~ri--------~e~d~d~----------klSr~ 426 (746)
..+-|+=+++ =+.-|-|++|.+.- +-+--|...++-+|+-+ ..+||-+ +|...
T Consensus 78 ~ayyLPk~~~--e~YqfcYv~~~g~V-------~G~S~pFqf~~~~p~eeLvtle~e~~~~DmLvV~~ka~~lQ~qlE~~ 148 (546)
T PF07888_consen 78 QAYYLPKDDD--EFYQFCYVDQKGEV-------RGASTPFQFRAPKPLEELVTLEDEDGNSDMLVVTTKAQLLQNQLEEC 148 (546)
T ss_pred CcccCCCCCC--CeEEEEEECCCccE-------EEecCCcccCCCCccccceeecccCCCcceEEEehhHHHHHHHHHHH
Confidence 3556666556 24558999998652 33556777777677543 1234322 22211
Q ss_pred -hh---hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 427 -QI---ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 427 -ce---~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
.+ +-+....++..+..|+...+.|+..|...+.+ .+++..|..-|....-.+..+......++++.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee----------~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEE----------MEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 11222233333444444444444444444443 44555556666666666666666667777777
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q psy2772 503 VAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 503 waEyaRLE~EV~~LRqkLQaQ 523 (746)
......||.++..|.+++.++
T Consensus 219 ~~ri~~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888777543
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.49 E-value=0.72 Score=55.74 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy2772 541 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ 581 (746)
Q Consensus 541 AqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~q 581 (746)
..++++++.+.+-++.+...+.+|..+++.+...-+.+.++
T Consensus 866 ~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~ 906 (1163)
T COG1196 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEE 906 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777766554444433
No 23
>KOG0161|consensus
Probab=94.37 E-value=0.83 Score=58.44 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHH
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLES 511 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~ 511 (746)
.+.++|..++.++.+|..+|.-|.-|.-+|..-. ....|+-+-.+.||+-+-..=..|..--.+....-...++||+
T Consensus 944 ~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~---e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~ 1020 (1930)
T KOG0161|consen 944 QLEELELTLQKLELEKNAAENKLKNLEEEINSLD---ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQ 1020 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555522 3355555556666666655555566566666777777889999
Q ss_pred HHHHHHHHHHHHHhh
Q psy2772 512 ELVVLRQKLQWSRRE 526 (746)
Q Consensus 512 EV~~LRqkLQaQr~~ 526 (746)
.|..|...|..+...
T Consensus 1021 ~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 1021 QLDDLEVTLEREKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888766543
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.26 E-value=0.64 Score=56.14 Aligned_cols=97 Identities=23% Similarity=0.167 Sum_probs=56.4
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVH--ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~--dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
.+...+.++.+++..|..|++++++.+..+.-.... .... ---.....+..|...++++|...+.++.....+|+++
T Consensus 187 nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 265 (1163)
T COG1196 187 NLERLEDLLEELEKQLEKLERQAEKAERYQELKAEL-RELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA 265 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467778888888888888887777655433322 2111 1123344455556666666666666666666666666
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q psy2772 503 VAANARLESELVVLRQKLQW 522 (746)
Q Consensus 503 waEyaRLE~EV~~LRqkLQa 522 (746)
-.+...|+.++..++..+..
T Consensus 266 ~~~i~~~~~~~~e~~~~~~~ 285 (1163)
T COG1196 266 EKEIEELKSELEELREELEE 285 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555554443
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.17 E-value=2.2 Score=44.98 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
..|++|+..+...++.+..-+....+.++.|+.++..||+...
T Consensus 159 ~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 159 ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555555555555554433
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.12 E-value=1.4 Score=47.85 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=73.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELV 514 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~ 514 (746)
.+.+.+..|+.+++.|+..+..+...++.+...-..+++++..-..+..+|......+.....++|+.-+++..+|.++.
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 35557777888888888888877777776555555556666666666666666666666666777777777777777777
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy2772 515 VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQ 560 (746)
Q Consensus 515 ~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQ 560 (746)
.|.++|.+=.. +.+.+++|..+.+.+-.-|...
T Consensus 383 ~l~~~l~~~~~-------------~~~~~~ke~~~~~~i~~~~~~~ 415 (562)
T PHA02562 383 KLQDELDKIVK-------------TKSELVKEKYHRGIVTDLLKDS 415 (562)
T ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 76666664332 5556677766655443333443
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=94.08 E-value=2.7 Score=48.54 Aligned_cols=97 Identities=14% Similarity=0.012 Sum_probs=52.5
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772 418 VMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK 497 (746)
Q Consensus 418 d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk 497 (746)
+....-.+..+.-+-+..++.+|..+++.++.|+.-+..+...+....+ ...++..++..|+..+..++.+|+...+
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~---~~~~l~~~~~~l~~k~~el~~~l~~~~~ 335 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA---DAEAVEARREELEDRDEELRDRLEECRV 335 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445666677777777777777777777777666632 2344444555555555555555544444
Q ss_pred HHHH-------HHHHHhhhHHHHHHHH
Q psy2772 498 KLEE-------TVAANARLESELVVLR 517 (746)
Q Consensus 498 ELE~-------twaEyaRLE~EV~~LR 517 (746)
++.+ .=..+..||.++..++
T Consensus 336 ~l~~~~~~~e~~~~~~~~le~~~~~l~ 362 (880)
T PRK02224 336 AAQAHNEEAESLREDADDLEERAEELR 362 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3344444444444433
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.04 E-value=1.1 Score=54.84 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=70.7
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP-----------AEVERYRRQQRLLERELSRVRSILAHNSK 497 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP-----------a~~EKi~~QQrlLE~eLsrVRaeLSrnSk 497 (746)
.+.++.+++.++..+...++.++..+.......+....-- ..+..+..+...|+.+|.....+|...-.
T Consensus 693 ~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~ 772 (1311)
T TIGR00606 693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772 (1311)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665555555555554444433333221 12222333334444444444444444433
Q ss_pred HHHHHHHH-------------HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 498 KLEETVAA-------------NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564 (746)
Q Consensus 498 ELE~twaE-------------yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeL 564 (746)
+|+..-.+ ..|+..++.-|+..|......... .....+...|+.|+..++.-+..|.+....+
T Consensus 773 ~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~----~~~~~s~~ele~ei~~~~~el~~l~~~~e~l 848 (1311)
T TIGR00606 773 LLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG----SDLDRTVQQVNQEKQEKQHELDTVVSKIELN 848 (1311)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222 244455555555555543322111 1112355778888888888888874444444
Q ss_pred HHHHHHHhhhcccc
Q psy2772 565 SAQVKQLTEKSNSL 578 (746)
Q Consensus 565 s~qVrqLt~~s~~l 578 (746)
.....++.+.-+.|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.87 E-value=1.2 Score=47.49 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=90.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHh---HhhhccCCC-hHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLR---HKMHGVHAS-PAEVERYRRQQRLL----ERELSRVRSILAHNS 496 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~---qqME~~~dq-Pa~~EKi~~QQrlL----E~eLsrVRaeLSrnS 496 (746)
|+.-.+-|...|+..+..|+.|+..|.+.+..+. .++....+. -..+..++..+..+ +++|.++|..|+..-
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~ 217 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444555666667777777777776665444333 223222222 23333444444444 347888888888888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSN 576 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~ 576 (746)
.+++...++..-++.++..++.++.+--+ .++.++.++.-.+.+.... |.==..-|..|.++.+
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~-------------~k~e~~~~I~~ae~~~~~~---r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTN-------------KKSELNTEIAEAEKKLEQC---RGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 88888888888888888888888875432 5666777766666654432 3223345666777777
Q ss_pred cccccccCCCcc
Q psy2772 577 SLSQQIRPGPTG 588 (746)
Q Consensus 577 ~l~~qi~~~~~~ 588 (746)
.|+.+.+=..++
T Consensus 282 ~Le~l~g~~~~~ 293 (312)
T smart00787 282 LLQSLTGWKITK 293 (312)
T ss_pred HHHHHhCCeeEe
Confidence 777655444443
No 30
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.86 E-value=1.4 Score=45.55 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASP-AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESEL 513 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP-a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV 513 (746)
.+...+..|+.+.+.++.-+..+.++++....+- .+-+.+...+.+++++++.-+..+ ..-.++.++-.++.+++.++
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~-~~~~~~~~~~~~l~~~~~~l 219 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL-ELERERAEAQGELGRLEAEL 219 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 3344444444445444444444444444444332 222345556666654443322222 22334444445555555555
Q ss_pred HHHHHHHH
Q psy2772 514 VVLRQKLQ 521 (746)
Q Consensus 514 ~~LRqkLQ 521 (746)
..++..+.
T Consensus 220 ~~~~~~l~ 227 (423)
T TIGR01843 220 EVLKRQID 227 (423)
T ss_pred HHHHHHHH
Confidence 55554444
No 31
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.74 E-value=2.6 Score=47.89 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=96.1
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR 508 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR 508 (746)
.+.+.......+..|..+...||.-|+.+.++|....+ +..++++...-..+++++..+.+++.....++++...+..+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~-~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 382 IQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS-EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455455567888889999999999999999988774 36888888888889999999999999999999988888888
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccccccCC
Q psy2772 509 LESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ-VKQLTEKSNSLSQQIRPG 585 (746)
Q Consensus 509 LE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q-VrqLt~~s~~l~~qi~~~ 585 (746)
++.++..++.+...... +++-+...+.+..-|..-+..|... +.+|...-+...+++-++
T Consensus 461 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 461 LRKTLDEKTKQKINAFE-----------------LERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888766655553321 3333333444444444545555554 344555545555555443
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.55 E-value=3 Score=42.44 Aligned_cols=115 Identities=26% Similarity=0.296 Sum_probs=78.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772 438 NICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLR 517 (746)
Q Consensus 438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LR 517 (746)
++++.|.+.-..|+.=+..++... ...+.. -...++.+|...|.+|...+++-.+.-.+.+.|..++..+|
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~------~~~~~~---~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKK------GEEVSR---IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HH---HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcc------cccCcc---cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 456677777766666555544432 111111 25567788888888888888888888888888888888888
Q ss_pred HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 518 QKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK 574 (746)
Q Consensus 518 qkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~ 574 (746)
.++.+... ....|+.|+..+...+......|.+|.+++..|.+.
T Consensus 89 ~k~e~e~~-------------~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 89 RKYEEELA-------------ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 88886654 344578888888888888888888888888877753
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=93.54 E-value=2.2 Score=49.35 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=38.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHH
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVV 515 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~ 515 (746)
++..+..+++.++.|++-+..+...+..+...-..++.+..+-..+++.+......+.....++.+.-..+.+|+.++..
T Consensus 218 l~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 218 LDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444334333333334444445555555555555555544455555555555555544444
Q ss_pred HHH
Q psy2772 516 LRQ 518 (746)
Q Consensus 516 LRq 518 (746)
|..
T Consensus 298 l~~ 300 (880)
T PRK02224 298 LLA 300 (880)
T ss_pred HHH
Confidence 333
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.52 E-value=2.1 Score=40.98 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 484 ELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
++...+.++...-.+|...+..|..++.++..|++.++..+
T Consensus 117 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 157 (191)
T PF04156_consen 117 DLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSR 157 (191)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333455666667777888888888888888886666554
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.51 E-value=2.1 Score=44.64 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
-|+.|+.-.-..+.....+|.+.-.++.+|+.+...|+..+..+..+-. -..+.++.|+.-|.+.+-+++.
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~---------e~~~~~e~e~~~i~e~~~~~~~ 163 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA---------EAEARLEEEVAEIREEGQELSS 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444455555555566666666666666665553211 1333345555555555555555
Q ss_pred HHHHHHH
Q psy2772 560 QRQELSA 566 (746)
Q Consensus 560 QRqeLs~ 566 (746)
+|.+|..
T Consensus 164 ~~~~L~~ 170 (239)
T COG1579 164 KREELKE 170 (239)
T ss_pred HHHHHHH
Confidence 5555543
No 36
>KOG1853|consensus
Probab=93.48 E-value=7.5 Score=41.79 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=77.3
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh--HHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP--AEVERYRRQQRLLERELSRVRSI---LAHNSKKLEETVAAN 506 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP--a~~EKi~~QQrlLE~eLsrVRae---LSrnSkELE~twaEy 506 (746)
|-.++|..|++|+..--+||+--..|+-+.+..++-- ++++- .+|-..|+.||++.|+. |-+-..|||++-...
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~-y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF-YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3456677777777777777776666666655544332 22332 24557899999998875 444567888886666
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 507 ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQE 563 (746)
Q Consensus 507 aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqe 563 (746)
.|-++--..+-..+...+ |++- -..|+||+||--=|-+++-+||-|.|
T Consensus 125 ErakRati~sleDfeqrL-nqAI--------ErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 125 ERAKRATIYSLEDFEQRL-NQAI--------ERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHhhhhhhhhHHHHHHHH-HHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 655554333333333222 2221 24678999999999999999887766
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=93.39 E-value=4.5 Score=46.54 Aligned_cols=76 Identities=26% Similarity=0.250 Sum_probs=33.9
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHH
Q psy2772 441 SVQGQAKEMLENALGSLRHKMHGVH--ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVL 516 (746)
Q Consensus 441 q~Lk~DKD~LEsAL~~L~qqME~~~--dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~L 516 (746)
..++.+.+.|+.-+..+..+++... -++...+.++..-.-|++++..++..+...-+++++...+...++.++..+
T Consensus 629 ~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444332 334444444444445555555444444444444444444444444444433
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.38 E-value=5.3 Score=40.73 Aligned_cols=83 Identities=30% Similarity=0.324 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHH
Q psy2772 474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQAL 553 (746)
Q Consensus 474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdV 553 (746)
-.....-+..|+...|..|....++|+..=+.++.||..|..|...+...+.... ..-..++.||..++.-
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~---------~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ---------AEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH---------HhhhccchhHHHHHHH
Confidence 3444566788888888888888999998889999999999999988887775422 2556678888777777
Q ss_pred HHHHHHHHHHHH
Q psy2772 554 VGDLQRQRQELS 565 (746)
Q Consensus 554 vggLsrQRqeLs 565 (746)
|....+.-++|-
T Consensus 278 ~~~~~~ey~~Ll 289 (312)
T PF00038_consen 278 MARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666666654
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.20 E-value=5.5 Score=38.13 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 483 RELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 483 ~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
.++......+...-...++.-.+...|.+++..++..++..+
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444455555555555443
No 40
>PRK09039 hypothetical protein; Validated
Probab=93.10 E-value=2.7 Score=45.04 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
+-+.|++-|-++|..+....++-.+...++..|.
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555444444444444
No 41
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.97 E-value=5.2 Score=42.60 Aligned_cols=69 Identities=10% Similarity=0.014 Sum_probs=43.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN 495 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn 495 (746)
.....+...-++..|..++++-+..|.+|...+++-.-..-+ ...+-...|-..|+.+|..+++++...
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD-ERLDVERARLNELSAQLVAAQAQVMDA 234 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888889999999999999999988883222110 111222234455666666666665443
No 42
>KOG0971|consensus
Probab=92.82 E-value=1.9 Score=52.19 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=85.7
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL 509 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL 509 (746)
.|||+.+-..-..|++.+...+.|++.-.+-++--.|-...+|- -.|+.|+.--|++==+ -|+|-.-..++.|
T Consensus 272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm-----aTldKEmAEERaesLQ--~eve~lkEr~del 344 (1243)
T KOG0971|consen 272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM-----ATLDKEMAEERAESLQ--QEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 45555555555556666666666655544433322222222222 1344444444444322 3556666677777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCC------------------------C---CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 510 ESELVVLRQKLQWSRREVCNGTASLS------------------------N---GPSVAALEAELRRVQALVGDLQRQRQ 562 (746)
Q Consensus 510 E~EV~~LRqkLQaQr~~~~~~~~~~~------------------------~---~qekAqLekELwRIQdVvggLsrQRq 562 (746)
|-||+.||..++++.- +..... + -+...-+.+||.+-..=+.-|.++|.
T Consensus 345 etdlEILKaEmeekG~----~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE 420 (1243)
T KOG0971|consen 345 ETDLEILKAEMEEKGS----DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE 420 (1243)
T ss_pred HHHHHHHHHHHHhcCC----CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788887777775531 110000 0 13444567888888888899999999
Q ss_pred HHHHHHHHHhhhcccccccccC
Q psy2772 563 ELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 563 eLs~qVrqLt~~s~~l~~qi~~ 584 (746)
-|+.+++++-..-..|++|++.
T Consensus 421 ~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 421 RLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888764
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.77 E-value=5.3 Score=48.86 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=67.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHH-
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAA- 505 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaE- 505 (746)
+.|-+.++..-+..++++..||.++. +++..-+-+|..+.+++.+-..|+.+|.+|...=+.+. +-|+..|..
T Consensus 735 ~~i~~~i~~~~~~~~~~~~~le~~~~---~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~ 811 (1201)
T PF12128_consen 735 EQIKQEIAAAKQEAKEQLKELEQQYN---QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKV 811 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 34444455555555566666666543 66777889999999999999999999999987776665 778888986
Q ss_pred ------HhhhHHHHHHHHHHHHHHH
Q psy2772 506 ------NARLESELVVLRQKLQWSR 524 (746)
Q Consensus 506 ------yaRLE~EV~~LRqkLQaQr 524 (746)
...|+.++..++++++.-.
T Consensus 812 ~~~~~~~~~l~~~~~~~~~~~~~l~ 836 (1201)
T PF12128_consen 812 DELREEKPELEEQLRDLEQELQELE 836 (1201)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6677777777766655433
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.31 E-value=2.3 Score=53.43 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=19.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSL 457 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L 457 (746)
-+.+.++.+++.++..|++++++.+.-+...
T Consensus 310 ~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 310 VEMARELAELNEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777777777777766655443
No 45
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=92.26 E-value=4.5 Score=40.38 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=79.8
Q ss_pred HHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 451 ENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS---------KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 451 EsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---------kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
...|...++|++.|. -.+...++.|=..|++.|..|...+-... ..|.+.+.++.+..+.+..+|++=.
T Consensus 35 ~~~l~~~~~qa~~y~--~~~~~elR~qv~~l~~~l~~v~~lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~ 112 (208)
T PF14644_consen 35 VQKLQSYQEQADEYH--NSCLQELRNQVERLEELLPKVPELVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHE 112 (208)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445554 24677788888888999998888776643 4566667777777777777777766
Q ss_pred HHHhhhccCCCCCCCCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 522 WSRREVCNGTASLSNGPSVAAL----EAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 522 aQr~~~~~~~~~~~~~qekAqL----ekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
-+++ +.+..++-..+| ++|=.|..+.+.+++..++.|-..+++-.
T Consensus 113 ~~Lr------P~LghP~~~~eL~~L~~~E~~R~~~~~~~I~~~~~~l~~~~~~~a 161 (208)
T PF14644_consen 113 QQLR------PNLGHPDNRQELESLCEREEKRQKEHQEAIQNFWEKLLEEVRKEA 161 (208)
T ss_pred HhCC------CcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553 334455555555 78999999999999999999887776544
No 46
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.96 E-value=5.7 Score=46.04 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=81.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------H
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK-------K 498 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk-------E 498 (746)
.....+-+.-++++|..|+++-++.|.+|...+++=.-.. --...+.+..|-..|+.+|...+.+++..+. +
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d-~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~ 340 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVD-LNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPT 340 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCch
Confidence 4456677788888899999999999999988888722221 1123333334444455555555544433332 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK 569 (746)
Q Consensus 499 LE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVr 569 (746)
+.+.=+..+.|++++..+++.+...-. ...+-..|++|..--+++-..|-.+++|++.+..
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~~~p~----------~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLNKRVSAMPS----------TQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222333345566666555555442211 2245567888888889999999999999866643
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.95 E-value=8.6 Score=35.86 Aligned_cols=121 Identities=23% Similarity=0.225 Sum_probs=72.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHhhhH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRV---RSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrV---RaeLSrnSkELE~twaEyaRLE 510 (746)
..++..++.++...+..+..+..++..|+. ..+.+..=|.-.|+||+.- -..|+.+-+++...=.+...|.
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~------q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLES------QAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777776666653 3344555566678887642 2233333344444445555555
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 511 SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK 569 (746)
Q Consensus 511 ~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVr 569 (746)
.++...+..|...... -..++..|++|+.-++.=+.+|..|-.=|=.|+.
T Consensus 80 ~~~~~a~~~l~~~e~s---------w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 80 AEAESAKAELEESEAS---------WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555444321 1247788888888888777777777777666654
No 48
>KOG0971|consensus
Probab=91.90 E-value=3.8 Score=49.78 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=59.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHhHhhhccCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy2772 438 NICSVQGQAKEMLENALGSLRHKMHGVHAS-----PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESE 512 (746)
Q Consensus 438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-----Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~E 512 (746)
..+-.||+--|.||.=|+-|+.+|+--++. --..-.+.+|-.-|-+-|+|.|-..|+....--++..|..++-.|
T Consensus 332 ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 446678888999999999999999866543 245667888888899999999999887765555555555555555
Q ss_pred HHHHH
Q psy2772 513 LVVLR 517 (746)
Q Consensus 513 V~~LR 517 (746)
+..||
T Consensus 412 ~~eL~ 416 (1243)
T KOG0971|consen 412 LEELR 416 (1243)
T ss_pred HHHHH
Confidence 55544
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.82 E-value=5.9 Score=43.01 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=44.3
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK 497 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk 497 (746)
.......+-++..+..++++-++.|.+|...+++=.- ..|.....+..+-..|+.+|..++++++....
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a 225 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGG--ILPDQEGDYYSEISEAQEELEAARLELNEAIA 225 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--cCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888888888888888888888766221 13444444555566666666666666555443
No 50
>PRK11519 tyrosine kinase; Provisional
Probab=91.69 E-value=6.7 Score=45.39 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=83.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------H
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK-------K 498 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk-------E 498 (746)
.....+.+.-++.++..|+++-+..|.+|...+++ +..-+-....+....|-..|+.+|..+..+++..++ .
T Consensus 262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~-~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~ 340 (719)
T PRK11519 262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD-KDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPA 340 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence 34455677888889999999999999999888877 222222344555555556666666666555554432 2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK 569 (746)
Q Consensus 499 LE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVr 569 (746)
|...-+..+.|++++..++..+..-- ...++-..|++|..--+.+-..|-.+++|++.+..
T Consensus 341 v~~l~~~~~~L~~~~~~l~~~~~~lp----------~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a 401 (719)
T PRK11519 341 YRTLLEKRKALEDEKAKLNGRVTAMP----------KTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEA 401 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 33333334445555555554443211 01235567899999999999999999999865543
No 51
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.63 E-value=7.3 Score=36.51 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=70.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE 510 (746)
.|+.-+-+.|+.-.+|.+..|...+.++.--......-..++++..|-..+|+++........+..+++......+..+-
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666665555554433333334456666666777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 511 SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 511 ~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
.||.-|+..+|. .+++.+-|++|-+-=+..|+.
T Consensus 115 ee~~klk~~~~~----------------~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 115 EELQKLKNQLQQ----------------RKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 777666666662 334466666666666655544
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.41 E-value=4.2 Score=51.34 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=48.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772 424 SRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE---RYRRQQRLLERELSRVRSILAHNSKKLE 500 (746)
Q Consensus 424 Sr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E---Ki~~QQrlLE~eLsrVRaeLSrnSkELE 500 (746)
.+..+.-|.|.+-+.++..+.+.-+.|+.-|..|..+.+.+..--...+ ++.++...++.+|.....++.....+++
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLe 372 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVE 372 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777777777777777777777777655553322222 2334444455555555555555555555
Q ss_pred HHHHHHhhh
Q psy2772 501 ETVAANARL 509 (746)
Q Consensus 501 ~twaEyaRL 509 (746)
+...+...+
T Consensus 373 eleeeleel 381 (1486)
T PRK04863 373 EADEQQEEN 381 (1486)
T ss_pred HHHHHHHHH
Confidence 544443333
No 53
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.30 E-value=3.5 Score=47.29 Aligned_cols=62 Identities=6% Similarity=0.032 Sum_probs=39.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 504 AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQV 568 (746)
Q Consensus 504 aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qV 568 (746)
++|+.+.+.+..|+..+......... ......+-..|++|..-.+++-..|-.+++|...+.
T Consensus 345 ~~~~~a~~~~~~L~~~l~~~~~~~~~---~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 345 MQADAAQARESQLVSDVNQLKAASAQ---AGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555543322111 001235677889999999999999999999987665
No 54
>KOG3156|consensus
Probab=91.28 E-value=1.5 Score=45.41 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=72.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN-SK 497 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn-Sk 497 (746)
--+.+.|.-|+-.+=..+-+.|=.+ +-.++.+....+.+.--..+..+++.|||+ .+|.++|.+|--. =.
T Consensus 46 dt~alvr~LE~~Gf~~kQAETIt~a------iT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~---~~f~kiRsel~S~e~s 116 (220)
T KOG3156|consen 46 DTHALVRSLEAAGFDSKQAETITSA------ITTVLNDSLETVSKELVTKAQQEKVSYQQK---VDFAKIRSELVSIERS 116 (220)
T ss_pred hHHHHHHHHHHcCCChhhHHHHHHH------HHHHHcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3456666666555544444444332 334566666666666677888899999986 6899999887433 57
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 498 KLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 498 ELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
|+-+.=+||.+|=+||+.+|+.|.++..+
T Consensus 117 EF~~lr~e~EklkndlEk~ks~lr~ei~~ 145 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKSSLRHEISK 145 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999854
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.24 E-value=7.1 Score=40.86 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHhhhHHHHHHHHHHH
Q psy2772 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEET--VAANARLESELVVLRQKL 520 (746)
Q Consensus 470 ~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t--waEyaRLE~EV~~LRqkL 520 (746)
+++.+..|-..+|.+|..+|..+++...+|-.+ =.+|.-|++|+..+++..
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888888888888777332 256777777776665543
No 56
>KOG0161|consensus
Probab=91.22 E-value=2.6 Score=54.18 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=108.8
Q ss_pred cccccccccccccccCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHh----HhhhccCCC
Q psy2772 392 ACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLR----HKMHGVHAS 467 (746)
Q Consensus 392 ALEkWpv~~~l~irvrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~----qqME~~~dq 467 (746)
.|-.||- +.||.+|+||=.+.+.+--+--|=.-+...+..++..|.....|.+..++++.-+..|- ++++-..+.
T Consensus 814 ~lr~w~W-~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~a 892 (1930)
T KOG0161|consen 814 KLRTWPW-WRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEA 892 (1930)
T ss_pred hhccCHH-HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567886 67899999998877766554444333444444444444444444444444444333333 333334444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH--------HHhhhccCCCCCCCCcc
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW--------SRREVCNGTASLSNGPS 539 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa--------Qr~~~~~~~~~~~~~qe 539 (746)
-...++.......||.+|.-...++..+..+....-.++-.+|+++.-|+..++. +++.+. ....
T Consensus 893 ee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~-------~e~~ 965 (1930)
T KOG0161|consen 893 EELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNA-------AENK 965 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 4445566677778888888777777776655555555555555555555443331 022111 1234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy2772 540 VAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQ 580 (746)
Q Consensus 540 kAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~ 580 (746)
-..|+.|+...++..+-|.+.|.+|..+.++|.+..+....
T Consensus 966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ee 1006 (1930)
T KOG0161|consen 966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEE 1006 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888999999999999999999988866554443
No 57
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.91 E-value=9 Score=44.26 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.+...+.||.++..+....-...++++..-.-...+|+.-..|++.|+
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk 265 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLK 265 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777666666644444444444444444444444445554
No 58
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.77 E-value=6.9 Score=38.06 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772 477 QQRLLERELSRVRSILAHNS-KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnS-kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg 555 (746)
+..++..++..+|.+|...- .++.+.-+++.+|.+|+..|++.|.+......+. .+..|.-|=-||.+...
T Consensus 52 ~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~--------~klD~n~eK~~~r~e~~ 123 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAE--------VKLDLNLEKGRIREEQA 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHH
Confidence 44555667777888887653 6677888999999999999999999887532221 22222222236666666
Q ss_pred HHHHHHHHHHHHH
Q psy2772 556 DLQRQRQELSAQV 568 (746)
Q Consensus 556 gLsrQRqeLs~qV 568 (746)
.+...-+++.+.+
T Consensus 124 ~~~~ki~e~~~ki 136 (177)
T PF07798_consen 124 KQELKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555554443
No 59
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.71 E-value=3.8 Score=47.48 Aligned_cols=141 Identities=26% Similarity=0.254 Sum_probs=72.6
Q ss_pred hhhhhhhhhhhhhhHH-------HHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKE-------MLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA 505 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD-------~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE 505 (746)
++.+.+.|..|+.+|+ .||+-|.-|+.+|..-. .|.....-..-...|+.++-+.|.++.....+++.-+.+
T Consensus 31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ 109 (617)
T PF15070_consen 31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVEN 109 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888876 57888888888877654 222111111111233444444444444444333333333
Q ss_pred Hhhh--------------HHHHHHH------HHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 506 NARL--------------ESELVVL------RQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELS 565 (746)
Q Consensus 506 yaRL--------------E~EV~~L------RqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs 565 (746)
|..| |..|..+ +.+|-+++.+-.. +.|.. ..+..+|+.-|--.|+..--|+...-||-
T Consensus 110 ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~-t~SRA-lsQN~eLK~QL~Elq~~Fv~ltne~~elt 187 (617)
T PF15070_consen 110 NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKA-TASRA-LSQNRELKEQLAELQDAFVKLTNENMELT 187 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-HHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 3322 2222222 2233333332111 01111 14556888889999998888888876654
Q ss_pred HH-------HHHHhhhcc
Q psy2772 566 AQ-------VKQLTEKSN 576 (746)
Q Consensus 566 ~q-------VrqLt~~s~ 576 (746)
.+ .|.|+.+-+
T Consensus 188 ~~lq~Eq~~~keL~~kl~ 205 (617)
T PF15070_consen 188 SALQSEQHVKKELQKKLG 205 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 33 357874433
No 60
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.47 E-value=4.7 Score=47.39 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
.|+++.-.++..-.+.-.++|+++.....|++-+..+.+.++.+.-. .+..-..+.+||+++++.+.+|+.
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~---------LS~AEr~~~~EL~~~~~~l~~l~~ 653 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV---------LSEAEREFKKELERMKDQLQDLKA 653 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555556788889988888988888888877643211 122235688999999998877765
Q ss_pred HHHHHHHHHH
Q psy2772 560 QRQELSAQVK 569 (746)
Q Consensus 560 QRqeLs~qVr 569 (746)
.=.++...++
T Consensus 654 si~~lk~k~~ 663 (717)
T PF10168_consen 654 SIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.37 E-value=2.5 Score=40.38 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=59.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE 510 (746)
.=+..|..+++.|..+-|+++.-|..+...++.....-...+.+-.--.+||++|-....-|.....+|+++=..-..+|
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33455666666777777777777777777766665555555656556667778887777777777777777777777777
Q ss_pred HHHHHHHH
Q psy2772 511 SELVVLRQ 518 (746)
Q Consensus 511 ~EV~~LRq 518 (746)
+-|..|-+
T Consensus 115 Rkv~~le~ 122 (143)
T PF12718_consen 115 RKVKALEQ 122 (143)
T ss_pred HHHHHHHh
Confidence 76666544
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.22 E-value=8.9 Score=47.28 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHH
Q psy2772 481 LERELSRVRSILAHNSKKLEETVAANARLESELVVL 516 (746)
Q Consensus 481 LE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~L 516 (746)
||.++..+..+|....++++....++.+++.++..|
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555555554444
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.15 E-value=5.9 Score=46.54 Aligned_cols=134 Identities=26% Similarity=0.310 Sum_probs=84.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHH----HHHHHHHHHHHHHHHHHHHHh----hhHH--------
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVER----YRRQQRLLERELSRVRSILAH----NSKK-------- 498 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EK----i~~QQrlLE~eLsrVRaeLSr----nSkE-------- 498 (746)
.+...|++||+|-|.|++-|..|-+.-++.+.+-+.+|| -+.|+-.||.+|..-|..=-+ ....
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 344568999999999999999998888888777666665 355667788888776643111 0000
Q ss_pred HHHHH---HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHH-----------HHHHHHHHHHHHHH--
Q psy2772 499 LEETV---AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELR-----------RVQALVGDLQRQRQ-- 562 (746)
Q Consensus 499 LE~tw---aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELw-----------RIQdVvggLsrQRq-- 562 (746)
=|.+= ..-..||.|+-.||..|...-+ +..+||+|++ .++.||..|+.-+.
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee-------------~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEE-------------QIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN 603 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 01111 1235588888888888775433 2233444332 36667777766543
Q ss_pred -------------------HHHHHHHHHhhhccccccc
Q psy2772 563 -------------------ELSAQVKQLTEKSNSLSQQ 581 (746)
Q Consensus 563 -------------------eLs~qVrqLt~~s~~l~~q 581 (746)
.|+.+-|||......+.++
T Consensus 604 ~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~ 641 (697)
T PF09726_consen 604 QHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKK 641 (697)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888776666553
No 64
>KOG0240|consensus
Probab=89.61 E-value=6.1 Score=45.88 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=95.3
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhh----hhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHH
Q psy2772 417 GVMIHAISRDQIASKLHSRGRNICSVQG----QAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRV 488 (746)
Q Consensus 417 ~d~d~klSr~ce~dKilqelE~kLq~Lk----~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrV 488 (746)
+|.+.-++-.....-++.+.+..|..++ +++|.++.-+..|.||+.+..++ -+..+++.+|-..=++=|+..
T Consensus 382 ~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~ 461 (607)
T KOG0240|consen 382 EDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSST 461 (607)
T ss_pred chhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555555555555555566677777776 89999999999999987666543 566677777666656666777
Q ss_pred HHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 489 RSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPS-----VAALEAELRRVQALVGDLQRQRQE 563 (746)
Q Consensus 489 RaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qe-----kAqLekELwRIQdVvggLsrQRqe 563 (746)
|+++.....+|-+.-.++..-+++|..+-++|.+-..+..- ..++ ..-+++||-..|..+++-++.=.+
T Consensus 462 ~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~------~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~ 535 (607)
T KOG0240|consen 462 RRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQ------KSEEKESKLSQNLKSELQSLQEPSEHQSKRITE 535 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHhhhhhhhhHHHHHhhhhcccchhHHHHH
Confidence 88777777777777777777777777777777654443110 1111 111678888888887776666555
Q ss_pred HHHH
Q psy2772 564 LSAQ 567 (746)
Q Consensus 564 Ls~q 567 (746)
|-..
T Consensus 536 ~~~~ 539 (607)
T KOG0240|consen 536 LLSE 539 (607)
T ss_pred HHHH
Confidence 5443
No 65
>PRK09039 hypothetical protein; Validated
Probab=89.30 E-value=24 Score=38.03 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=34.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
...+..+.+++..+..++..++.||+.+.+.. .+..-+|..+.....+|+...++..++-.+.
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~-----------------~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V 139 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQALLAELA-----------------GAGAAAEGRAGELAQELDSEKQVSARALAQV 139 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------hhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444455555555555555555555554221 0112233333333344444444444444555
Q ss_pred hhhHHHHHHHHHH
Q psy2772 507 ARLESELVVLRQK 519 (746)
Q Consensus 507 aRLE~EV~~LRqk 519 (746)
.+|-+++..||..
T Consensus 140 ~~L~~qI~aLr~Q 152 (343)
T PRK09039 140 ELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 66
>PRK11281 hypothetical protein; Provisional
Probab=89.20 E-value=12 Score=46.21 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc--------cCC--CCCCCC-------cchHHHHHHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSRREVC--------NGT--ASLSNG-------PSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~--------~~~--~~~~~~-------qekAqLekELwRIQdVvggLsr 559 (746)
+..+..-.+..++|+++..|...+-.+|...+ ... ...+.. ....+|-.+|-..-+-|+.|.+
T Consensus 227 ~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~ 306 (1113)
T PRK11281 227 KQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQ 306 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777776665443211 000 000000 1122333344444444555555
Q ss_pred HHHHHHHHHHHHhhhccccccccc
Q psy2772 560 QRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 560 QRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
+.....++.+++++.-.++.+||.
T Consensus 307 ~~~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 307 QNLRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566655555555553
No 67
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.75 E-value=16 Score=42.18 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=110.3
Q ss_pred EeeeccccccccccccccccccccccCCCCcceeeecc----------hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy2772 381 LLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGV----------MIHAISRDQIASKLHSRGRNICSVQGQAKEML 450 (746)
Q Consensus 381 ~aYTNHTILpEALEkWpv~~~l~irvrp~~p~ri~e~d----------~d~klSr~ce~dKilqelE~kLq~Lk~DKD~L 450 (746)
|.-+||..|.+.=+.=|.+-|+-.++.- -+-+---| ..-|++--.+.|.-.+.+++|-+.|++|--++
T Consensus 237 ~~~~Y~~fl~~~~~~~~~e~Elk~~f~~--~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~ 314 (622)
T COG5185 237 FTESYKSFLKLEDNYEPSEQELKLGFEK--FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKY 314 (622)
T ss_pred HHHHHHHHhcCCCccCchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4457788887776666666555544432 11111122 33445555556667889999999999999999
Q ss_pred HHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 451 ENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 451 EsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
+++.-+++++|+.+-.- ..++++...|-..|+......|.+|-.- ..+.|.-.+|-.+|-+||.-+.-+--.=
T Consensus 315 ~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L 394 (622)
T COG5185 315 ENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKL 394 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999987522 3345555666666666666666666542 3566777777777777666554433322
Q ss_pred HhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 524 RREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 524 r~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
+-. ...++...|.=..-+++.+-++-.-+++++.---|+....+-..-.|+
T Consensus 395 ~k~---------V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN 445 (622)
T COG5185 395 TKS---------VKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKIN 445 (622)
T ss_pred HHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeec
Confidence 211 111223333333344444444444444444433444444444443443
No 68
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.75 E-value=8.3 Score=40.52 Aligned_cols=146 Identities=17% Similarity=0.106 Sum_probs=80.2
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE-VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~-~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE 510 (746)
-+.-++..+..++++-+..|.+|..-+.+=.-. +|.. ......+-..|+.+|..++++|+....-+.+.=-+.-.|+
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~--d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVF--DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Confidence 334444555555555555555554444441111 4543 4445566677777777777777755443333333455678
Q ss_pred HHHHHHHHHHHHHHhhhccCCC-CCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 511 SELVVLRQKLQWSRREVCNGTA-SLS-NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 511 ~EV~~LRqkLQaQr~~~~~~~~-~~~-~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
.++..|+..+++...+...+.. .+. ...+-..|++|+.-.+++...+-.+.++...+..+=.-....+.
T Consensus 249 ~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~~vi~ 319 (362)
T TIGR01010 249 ARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYLEVIS 319 (362)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeee
Confidence 8888888888876543222100 000 11334467777777777777777777777655444333333333
No 69
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.63 E-value=7.6 Score=44.07 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q psy2772 448 EMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREV 527 (746)
Q Consensus 448 D~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~ 527 (746)
..+...|+.++.++.+....-...+....+-..++.++...++++++..+.||..-.....--..+...++.|..+-.+-
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 39 EEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544333445556666667777778888888888888888777776666667888888888777664
Q ss_pred ccCCCCCC------CCcc-------hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccccccc
Q psy2772 528 CNGTASLS------NGPS-------VAALEAELRRVQALVGDL----QRQRQELSAQVKQLTEKSNSLSQQ 581 (746)
Q Consensus 528 ~~~~~~~~------~~qe-------kAqLekELwRIQdVvggL----srQRqeLs~qVrqLt~~s~~l~~q 581 (746)
++- -+. ..+. -..|+..|.+.+.-|..+ .+.|.+|..++++|.+.+..+.+.
T Consensus 119 A~~--ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~e 187 (475)
T PRK10361 119 ANR--IFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQE 187 (475)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 331 000 0011 122345555555555544 467899999999999877776643
No 70
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=88.45 E-value=21 Score=36.62 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 470 EVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 470 ~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
.++.+..+-.+.++++.|.+.+..+.. .+++++-.+|..++.++..++..+..+
T Consensus 105 ~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~ 161 (327)
T TIGR02971 105 TLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQ 161 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777788888887777763 788888888888888888888777633
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.36 E-value=7.5 Score=47.64 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHhhhcccccccccCCCccccccccccCCCCCCCcccccc
Q psy2772 570 QLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVS 609 (746)
Q Consensus 570 qLt~~s~~l~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (746)
++.+....|..++.|.+-..- .=-.-|.||=..--|||.
T Consensus 522 ~~~~~~~~l~~~L~p~~gSL~-~fL~~~~p~We~tIGKVi 560 (1201)
T PF12128_consen 522 ELRAQIAELQRQLDPQKGSLL-EFLRKNKPGWEQTIGKVI 560 (1201)
T ss_pred HHHHHHHHHHHhhCCCCCcHH-HHHHhCCCcHHHHhHhhC
Confidence 344556677777877765432 122457888888888885
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.16 E-value=15 Score=39.40 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK 574 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~ 574 (746)
.-.+++.+|..+.+.++....+++++-.+++.+...
T Consensus 226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577888888888888888888888888877653
No 73
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.04 E-value=19 Score=38.41 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=65.8
Q ss_pred hhhhhhhHHHHHHHHHHHhHhhhccCC-ChHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772 440 CSVQGQAKEMLENALGSLRHKMHGVHA-SPAEVERYRRQQRLLERELSRVRS-ILAHNSKKLEETVAANARLESELVVLR 517 (746)
Q Consensus 440 Lq~Lk~DKD~LEsAL~~L~qqME~~~d-qPa~~EKi~~QQrlLE~eLsrVRa-eLSrnSkELE~twaEyaRLE~EV~~LR 517 (746)
++.|+.+...+|.-|..++.. |.+ +|... .++.|...|++.|..-.+ ..+...++++.+-+..+.|+..+..++
T Consensus 256 i~~l~~~l~~le~~l~~l~~~---y~~~hP~v~-~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 331 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQR---LGPNHPQYK-RAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQK 331 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666665544 443 35443 455555555555433211 122223444555555666666666666
Q ss_pred HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 518 QKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ 567 (746)
Q Consensus 518 qkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q 567 (746)
+.+..--. ...+-..|++|+.-.+++-..|-.+++|...+
T Consensus 332 ~~~~~l~~----------~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 332 AKVLELNR----------QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65552211 12355678999999999999999999888654
No 74
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.43 E-value=21 Score=39.02 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772 475 RRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQW 522 (746)
Q Consensus 475 ~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQa 522 (746)
..+.+.++.++...+.++.+. +.++.+...++++|+.++..++..+.+
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 211 QSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555655555543332 125666677777888887777777664
No 75
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.43 E-value=16 Score=42.17 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 542 ALEAELRRVQALVGDLQRQRQELS 565 (746)
Q Consensus 542 qLekELwRIQdVvggLsrQRqeLs 565 (746)
.|++.|..++.-+..+..+..+|.
T Consensus 356 ~L~~~l~~~~~~~~~~~~~~~e~~ 379 (754)
T TIGR01005 356 QLVSDVNQLKAASAQAGEQQVDLD 379 (754)
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHH
Confidence 344444444444444444444333
No 76
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=3.4 Score=48.13 Aligned_cols=99 Identities=21% Similarity=0.168 Sum_probs=67.0
Q ss_pred ecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 416 IGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN 495 (746)
Q Consensus 416 e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn 495 (746)
..|..+...++-...+.++.++..++.|+..-+.|++-+.-|+.+++.++ +=.++.....+++..-...|...
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~-------r~~~~~~~~~rei~~~~~~I~~L 486 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR-------REVRDKVRKDREIRARDRRIERL 486 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555666666666666666666655555555544444444444433 33346677778888888888999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH--HHHH
Q psy2772 496 SKKLEETVAANARLESELVVLR--QKLQ 521 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~LR--qkLQ 521 (746)
-++|++.-.+-..||+++..|| ++|.
T Consensus 487 ~~~L~e~~~~ve~L~~~l~~l~k~~~lE 514 (652)
T COG2433 487 EKELEEKKKRVEELERKLAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999 5555
No 77
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.38 E-value=0.18 Score=59.47 Aligned_cols=148 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE----RYRRQQRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E----Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
..+.++...|.+|++.|.+||+.=..+..++..-..+-.... .+..+.+.||.+|..++..+......+-..-...
T Consensus 131 ~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k 210 (859)
T PF01576_consen 131 DAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQK 210 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888765544444433333322211 2234577899999999999999988888888999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 507 ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 507 aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
.||+.|+..|...|.+....... ....+..|+..|--++.-+..-++.|..|..++++|..-.+.|..++.-
T Consensus 211 ~kL~~E~~eL~~qLee~e~~~~~------l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee 282 (859)
T PF01576_consen 211 AKLQSENSELTRQLEEAESQLSQ------LQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE 282 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999876533222 3357788999999999999999999999999999999888888777653
No 78
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.23 E-value=7.4 Score=39.08 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=71.5
Q ss_pred chhhhhhhhhhhhhhhhhhhh----------hhh---hhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHH
Q psy2772 418 VMIHAISRDQIASKLHSRGRN----------ICS---VQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERE 484 (746)
Q Consensus 418 d~d~klSr~ce~dKilqelE~----------kLq---~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~e 484 (746)
.+|.=.+.+....|.+.+||. +|. ++|.+..++-.-+..+..+|+.. -+...++...-..||..
T Consensus 63 ~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~---~~~~~~~e~~i~~Le~k 139 (190)
T PF05266_consen 63 QIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK---EAELKELESEIKELEMK 139 (190)
T ss_pred ccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHH
Confidence 344445666667777776663 233 33444444444445555666555 33456677778889999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772 485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW 522 (746)
Q Consensus 485 LsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa 522 (746)
|...+.+.+...+++|...+|.+||+.++..+.+.+..
T Consensus 140 i~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 140 ILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888763
No 79
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=87.16 E-value=2.8 Score=46.35 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=18.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKM 461 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqM 461 (746)
+.-+++++++|..|++++..++..+..+..++
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666665555555554
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.11 E-value=18 Score=40.90 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=60.0
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERY-----RRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi-----~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
+..++|.+|+..-.-..+-|.+||.++..-++-++....-..-+..+ ..-...++++|-.+|.+.+.+..+|.-+
T Consensus 56 ~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~ 135 (522)
T PF05701_consen 56 EKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSV 135 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777765444333222111111111 1113337888999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHH
Q psy2772 503 VAANARLESELVVLRQK 519 (746)
Q Consensus 503 waEyaRLE~EV~~LRqk 519 (746)
..|..+|.+|+.-+...
T Consensus 136 k~EL~~lr~e~~~~~~~ 152 (522)
T PF05701_consen 136 KQELEKLRQELASALDA 152 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877543
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.07 E-value=11 Score=40.25 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHhhhccCCChHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 449 MLENALGSLRHKMHGVHASPAEVE---RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 449 ~LEsAL~~L~qqME~~~dqPa~~E---Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
.|+.-++.+..+...|..=-..++ .....-..++++|..+..+-...-++|++.=.|...|++|+..|...+.+.-+
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp -----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555543322222 12222334455555555555555555555555555555555444443332111
Q ss_pred hhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 526 EVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 526 ~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
+-...-++..-.+.-+..+...|++|.+|.+.+.++-+.|.
T Consensus 93 -------------eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 93 -------------EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333445555777888889999998888888887
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.99 E-value=22 Score=34.68 Aligned_cols=73 Identities=21% Similarity=0.222 Sum_probs=43.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELV 514 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~ 514 (746)
..+++|..-+.+||.|+.=..++.+.+++...+ +..+..|.-.-++++...-.+|+....+..+|+.||.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~----------~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQEN----------KECLILDAENSKAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999998888888888877766 3333333334444444444444444444444444444
Q ss_pred HHH
Q psy2772 515 VLR 517 (746)
Q Consensus 515 ~LR 517 (746)
-+|
T Consensus 77 ~l~ 79 (140)
T PF10473_consen 77 TLR 79 (140)
T ss_pred HHH
Confidence 333
No 83
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.77 E-value=37 Score=37.08 Aligned_cols=83 Identities=25% Similarity=0.205 Sum_probs=48.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHH-----
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK---KLEE----- 501 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk---ELE~----- 501 (746)
--+..+|..+|.+|+++|..||.+|+.=+ -.++.++..+=.-|+.+....+..|.+.-. +||+
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~Le~Eq---------E~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~E 175 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQLEQEQ---------EYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQE 175 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Confidence 45667888999999999999999987422 223444444444444444433333333321 2333
Q ss_pred -------HHHHHhhhHHHHHHHHHHHH
Q psy2772 502 -------TVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 502 -------twaEyaRLE~EV~~LRqkLQ 521 (746)
-|.--++|+.|=-.|..+|.
T Consensus 176 QE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 176 QEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36666777776444444443
No 84
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.73 E-value=12 Score=46.46 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccC---------C
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNS-------KKLEETVAANARLESELVVLRQKLQWSRREVCNG---------T 531 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnS-------kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~---------~ 531 (746)
++...++.-++..|+-++.--++++.-++ +..+-.-.+..++|+++..|++.+-.+|...+-. .
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~ 251 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAE 251 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333444444455555555555544443 3445566777888888888888877766432100 0
Q ss_pred CCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy2772 532 ASLSNG-------PSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 532 ~~~~~~-------qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi 582 (746)
...+.+ +...+|=.+|-..-+-|..|.++.....++..++++.-+++.+||
T Consensus 252 ~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 252 QSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 122333444555555555566666666666666666666666665
No 85
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.52 E-value=22 Score=42.13 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=63.3
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHNS------ 496 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrnS------ 496 (746)
..++++-.+++.++..|+..|++-=.-|..+.++++.-.+. -.-.|.|...|+.|.+-+-++...+....
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A 633 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA 633 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 34677777888888888888887555555555554444322 13467778889999888888877765522
Q ss_pred -----HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 497 -----KKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 497 -----kELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
+||+..=.+...|-..+.++|.+++.|..
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555666667777766554
No 86
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.48 E-value=3.7 Score=44.68 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=64.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC-hHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS-PAEVERY--------------RRQQRLLERELSRVRSILAHNSKK 498 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-Pa~~EKi--------------~~QQrlLE~eLsrVRaeLSrnSkE 498 (746)
++=...|.+.++-+..+++++...+.++.....+ -..+||| ..+-+.++++|+.++....+.|.-
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4445556666666666776666666666555443 2223333 344566677777777777777888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 499 LEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 499 LE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
..+-.+++++|=.++++.|+.|++....
T Consensus 296 V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 296 VSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888889999999999999999987653
No 87
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=86.29 E-value=18 Score=36.69 Aligned_cols=138 Identities=23% Similarity=0.229 Sum_probs=76.9
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRL-------LERELSRVRSILAHNSKKLEE 501 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrl-------LE~eLsrVRaeLSrnSkELE~ 501 (746)
.++++.+-..++..|+..--.-++-+..+++++. .+.-|+..+.. |++++.+++++-+..--+|+-
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq-------~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~ 110 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQ-------ALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES 110 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444555555555543 34444444444 555555555555555555543
Q ss_pred -HHHHHhhhHHHHHHHHHHHHHHHhhhcc----------CCCCCC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 502 -TVAANARLESELVVLRQKLQWSRREVCN----------GTASLS-----NGPSVAALEAELRRVQALVGDLQRQRQELS 565 (746)
Q Consensus 502 -twaEyaRLE~EV~~LRqkLQaQr~~~~~----------~~~~~~-----~~qekAqLekELwRIQdVvggLsrQRqeLs 565 (746)
-..|-++||.++..++-.+-+.+.+.-. +..+++ ...+..+|.++|...-.=...|...|..|.
T Consensus 111 qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le 190 (206)
T PF14988_consen 111 QFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLE 190 (206)
T ss_pred HHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999885555444333332220 000011 125666778888777777777777887777
Q ss_pred HHHHHHhh
Q psy2772 566 AQVKQLTE 573 (746)
Q Consensus 566 ~qVrqLt~ 573 (746)
.+-.+|..
T Consensus 191 ~qk~~L~~ 198 (206)
T PF14988_consen 191 KQKQQLQQ 198 (206)
T ss_pred HHHHHHHH
Confidence 77777753
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.15 E-value=37 Score=34.22 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=83.6
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772 424 SRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503 (746)
Q Consensus 424 Sr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw 503 (746)
.+.+..+|.|.+.......|.+--.+++.=...|+.++..|..+-+....+..+...++.+|...+-+-.-....+
T Consensus 41 k~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~---- 116 (201)
T PF13851_consen 41 KKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF---- 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4667788999999999999999888888889999999999988888888888888888887777665544444333
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 504 AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELS 565 (746)
Q Consensus 504 aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs 565 (746)
.+||+|-..|.++.........- -++-....||+-|.-+.+.++.-.+|-.++-
T Consensus 117 ---~kle~ErdeL~~kf~~~i~evqQ-----k~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 117 ---EKLEQERDELYRKFESAIQEVQQ-----KTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433322210000 0111334467666666666666555555543
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.15 E-value=26 Score=38.24 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSA 566 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~ 566 (746)
..+.++-++++.|+..+..|++.+.+....... ..+...+-..|++|+.--+.+...|..++++...
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRT---IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667777777777777776655433221 0112356667888888888888888888777544
No 90
>KOG0995|consensus
Probab=85.85 E-value=36 Score=39.89 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=74.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhh
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS-------KKLEETVAANAR 508 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS-------kELE~twaEyaR 508 (746)
++.....+-.+-+.|++..+.|-.+|......|...+..+.-...||.|+.--++-+++.- ++|+.-=.|..+
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~ 305 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEE 305 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3344444555778888888888888887788899999999999999999998888776652 334444445555
Q ss_pred hHHHHHHHHH---HHHHHHhhhccCCCCCCCC-------cchHHHHHHHHHHHHHHHHH
Q psy2772 509 LESELVVLRQ---KLQWSRREVCNGTASLSNG-------PSVAALEAELRRVQALVGDL 557 (746)
Q Consensus 509 LE~EV~~LRq---kLQaQr~~~~~~~~~~~~~-------qekAqLekELwRIQdVvggL 557 (746)
-|.|.+.|++ .|+.|.++..- ++ ++..+|++||.+|+-=..+|
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~i------S~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGI------SGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 35555543221 22 44555555555555444444
No 91
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.65 E-value=28 Score=43.64 Aligned_cols=109 Identities=18% Similarity=0.153 Sum_probs=66.4
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy2772 417 GVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE-----RYRRQQRLLERELSRVRSI 491 (746)
Q Consensus 417 ~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E-----Ki~~QQrlLE~eLsrVRae 491 (746)
...+..-.....+-.-+...+..+..++++.+.||.-+..++.+++...++|++-. .++.|=+.+++.+......
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~ 355 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQA 355 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555666667777777788888888888889999998888732 2223444444455555555
Q ss_pred HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 492 LAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 492 LSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
+...-..+++.-.+..+++..+..+...|++.++
T Consensus 356 ~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~ 389 (1353)
T TIGR02680 356 IREAESRLEEERRRLDEEAGRLDDAERELRAARE 389 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666666666666666555543
No 92
>KOG0933|consensus
Probab=85.64 E-value=21 Score=44.09 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=68.1
Q ss_pred hhhhhhhhhhhhhhhhhh---hhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHH--------HHHHHHHHHHHH
Q psy2772 422 AISRDQIASKLHSRGRNI---CSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQ--------RLLERELSRVRS 490 (746)
Q Consensus 422 klSr~ce~dKilqelE~k---Lq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQ--------rlLE~eLsrVRa 490 (746)
.+||+|++-.-++..+-+ .-.+.+.|+.+....+.+.+-+....+=--.+.+|.+|+ +.|+..|...+.
T Consensus 229 ~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~ 308 (1174)
T KOG0933|consen 229 RLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQN 308 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 578888887755544332 233444555555544444333322222222233333332 589999999999
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 491 ILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 491 eLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
++.+.++.+..........|.++..++..+.+++.
T Consensus 309 ~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~ 343 (1174)
T KOG0933|consen 309 EITREETSLNLKKETLNGEEEKLEEIRKNIEEDRK 343 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999988888877664
No 93
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.23 E-value=30 Score=39.12 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=53.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHH---HHHHHHhHhhhccCCChHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLE---NALGSLRHKMHGVHASPAEVE-RYRRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LE---sAL~~L~qqME~~~dqPa~~E-Ki~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
.+..+-+..|...+...++-+-+|. .-+..|+.+|..+..+....+ .....-..++..|.++..+|...-..|+.+
T Consensus 221 eeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~ 300 (522)
T PF05701_consen 221 EEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKA 300 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555555555 446677788888776322211 122333445555666666666666666666
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q psy2772 503 VAANARLESELVVLRQKLQ 521 (746)
Q Consensus 503 waEyaRLE~EV~~LRqkLQ 521 (746)
-+|-..|-..|.-||..|.
T Consensus 301 k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555554
No 94
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.80 E-value=8.4 Score=47.58 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=38.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhhHHH
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN-SKKLEETVAANARLESE 512 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn-SkELE~twaEyaRLE~E 512 (746)
+......|+...+.+|..|.+..+..+=++-+ .+-...|+..||.++..++..|++- =++-|++.++-.++..+
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q---~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~ 252 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLR---SELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQ 252 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34455567777777777777666655544433 1223333333444444444444332 24555666666666333
No 95
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=84.53 E-value=22 Score=37.92 Aligned_cols=149 Identities=11% Similarity=0.110 Sum_probs=86.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA 505 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE 505 (746)
+...+++.+.....|..-.++-+.=++.-..+|.+.-..|..|.-.... ..|..++..+|.-|.+.+.-=+....-
T Consensus 75 ~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~Wtr~~S~~~~----~~l~~~~~k~~~~L~~A~~SD~~l~~~ 150 (356)
T cd09237 75 LELLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILAKWTQSPSSSLT----ASLREDLVKLKKSLVEASASDEKLFSL 150 (356)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhh----HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344455555555555545554554555556777754445443222221 267788999999998888666666666
Q ss_pred HhhhHHHHHHHHHHHHHHHhh---hcc--CC-CCCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy2772 506 NARLESELVVLRQKLQWSRRE---VCN--GT-ASLS--NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 577 (746)
Q Consensus 506 yaRLE~EV~~LRqkLQaQr~~---~~~--~~-~~~~--~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~ 577 (746)
|...+.++.+|......-..- .+. .. ..+| ..+..+.+...+++++.++..|..-+.+=..-+..|.++++.
T Consensus 151 ~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~ 230 (356)
T cd09237 151 VDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHN 230 (356)
T ss_pred HHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666777888886544432221 111 00 1111 112222367788999999888887777777777777666554
Q ss_pred c
Q psy2772 578 L 578 (746)
Q Consensus 578 l 578 (746)
-
T Consensus 231 D 231 (356)
T cd09237 231 D 231 (356)
T ss_pred c
Confidence 3
No 96
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=84.12 E-value=32 Score=33.77 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE 500 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE 500 (746)
..+.++......+..+.++-+.||..+ ....++.....+.. |+++|.++|..+...-.-+.
T Consensus 115 il~~~~~~~~~~l~~l~~~l~~le~~~--------~~~~~~~~~~~l~~----l~~~l~~l~~~l~~~~~~l~ 175 (292)
T PF01544_consen 115 ILDEIVDDYFEVLEELEDELDELEDEL--------DDRPSNELLRELFD----LRRELSRLRRSLSPLREVLQ 175 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------THTTTHHHCCHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccccchhhHHHHHH----HHHHHHHHHHHhhhHHHHHH
Confidence 456677777777777777777777766 22233444444433 66777777777666554444
No 97
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=84.08 E-value=26 Score=35.81 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=68.8
Q ss_pred eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSIL 492 (746)
Q Consensus 413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeL 492 (746)
++..||+..+|...... .-+...+..+..++.....++..+..+..++.... +.++.+..+-...+.++.|...+.
T Consensus 63 ~V~kGq~L~~ld~~~~~-~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~a~~~l~~a~~~~~r~~~L~ 138 (334)
T TIGR00998 63 YVKQGDVLVRLDPTNAE-LALAKAEANLAALVRQTKQLEITVQQLQAKVESLK---IKLEQAREKLLQAELDLRRRVPLF 138 (334)
T ss_pred EEcCCCEEEEECchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44566777777644332 23455566666666666666665555555554332 456667777778888888888887
Q ss_pred Hhhh---HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 493 AHNS---KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 493 SrnS---kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.+.. .+++++-.+|...+.++..+++.++
T Consensus 139 ~~g~is~~~~~~a~~~~~~a~~~l~~~~~~~~ 170 (334)
T TIGR00998 139 KKGLISREELDHARKALLSAKAALNAAIQEQL 170 (334)
T ss_pred HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7763 6788888888888888777776433
No 98
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=83.83 E-value=37 Score=35.45 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=55.8
Q ss_pred eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSIL 492 (746)
Q Consensus 413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeL 492 (746)
++..+|+..+|.....+ --+...+..+...+...+.++.-+..-..+++. .-+.+++.+.+..+.++++.|.+.++
T Consensus 69 ~VkkGq~L~~ld~~~~~-~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~---~~~~i~~a~~~l~~a~~~~~R~~~L~ 144 (346)
T PRK10476 69 AVKKGDLLFRIDPRPYE-LTVAQAQADLALADAQIMTTQRSVDAERSNAAS---ANEQVERARANAKLATRTLERLEPLL 144 (346)
T ss_pred EEcCCCEEEEECcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777643222 123333344443333333332222211111111 11234445555666677777777777
Q ss_pred Hhhh---HHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772 493 AHNS---KKLEETVAANARLESELVVLRQKLQW 522 (746)
Q Consensus 493 SrnS---kELE~twaEyaRLE~EV~~LRqkLQa 522 (746)
.+.. .++|++-.+|...+.++..++..+..
T Consensus 145 ~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 145 AKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA 177 (346)
T ss_pred HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 67777777777777777776666553
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.38 E-value=39 Score=33.63 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2772 553 LVGDLQRQRQELSAQVKQL 571 (746)
Q Consensus 553 VvggLsrQRqeLs~qVrqL 571 (746)
+-..+...|..|-+++..+
T Consensus 138 l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444556666666665554
No 100
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.12 E-value=32 Score=43.17 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
++.+|..+..=+..+.+++.++..++..+.
T Consensus 926 l~a~L~e~r~rL~~l~~el~~~~~~~~~a~ 955 (1353)
T TIGR02680 926 IRARLAETRAALASGGRELPRLAEALATAE 955 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333
No 101
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=82.25 E-value=26 Score=38.24 Aligned_cols=84 Identities=23% Similarity=0.238 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy2772 482 ERELSRVRSILAHNSKKLEETV-AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQ 560 (746)
Q Consensus 482 E~eLsrVRaeLSrnSkELE~tw-aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQ 560 (746)
++++.-++..+....+.+...- +++..|++.+..|.+.+..-....... ....++-..|++|+.-.+.+.+.|-.+
T Consensus 319 ~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~---~~~~~~l~~L~Re~~~~r~~ye~lL~r 395 (458)
T COG3206 319 EAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL---PKLQVQLRELEREAEAARSLYETLLQR 395 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc---hHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333332 234555555555554444222111110 012356677888888888888888888
Q ss_pred HHHHHHHH
Q psy2772 561 RQELSAQV 568 (746)
Q Consensus 561 RqeLs~qV 568 (746)
++|+..+-
T Consensus 396 ~qe~~~~~ 403 (458)
T COG3206 396 YQELSIQE 403 (458)
T ss_pred HHHHHHhh
Confidence 88887765
No 102
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.08 E-value=49 Score=37.68 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 557 LQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 557 LsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
+..++|.+.+...|+-.+.+.+.|+|--
T Consensus 222 r~aa~Qq~~q~i~qrd~~i~q~~q~iaa 249 (499)
T COG4372 222 RAAAAQQTAQAIQQRDAQISQKAQQIAA 249 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666777777777777777643
No 103
>KOG0962|consensus
Probab=81.35 E-value=41 Score=42.58 Aligned_cols=227 Identities=16% Similarity=0.192 Sum_probs=134.8
Q ss_pred CCCCceEEEecCCCCc-cchhhhhhhhcccc--CcccccceeEEEE----------Eeee-----ccccccccc------
Q psy2772 338 HMPSPAIVATTGSGPF-LGYPKSDNIILPRK--QHLFLDSVIWYIS----------LLEV-----YRLGGPLAC------ 393 (746)
Q Consensus 338 ~fp~kvaIQiNDTHPs-LaIPELmRIL~de~--gl~wdeAv~wdIt----------~aYT-----NHTILpEAL------ 393 (746)
..--.|..+.||.|-. |++|--|-+..-.. .+.+.+.|+|.|. |+-. -|.+.+-|.
T Consensus 75 ev~AqvkL~f~~~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIF 154 (1294)
T KOG0962|consen 75 EVRAQVKLAFTDVNGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIF 154 (1294)
T ss_pred hhhheeeeeeecCCCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHHHhhhhe
Confidence 3444567778888754 55566665554322 4556666667664 2211 122222222
Q ss_pred -----cccccccccccccC------CCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772 394 -----GPWKVHAELPIRVR------PVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMH 462 (746)
Q Consensus 394 -----EkWpv~~~l~irvr------p~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME 462 (746)
-.||..=-.-++-+ -.++++ --|..-|+-.+|.++ ++..+..|..|+.+|+.-|..=...|+-..
T Consensus 155 cHQEdS~WPLsEp~~LKkkfD~IF~~tky~K--Ald~~kk~rkd~~~e--vk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ 230 (1294)
T KOG0962|consen 155 CHQEDSTWPLSEPKNLKKKFDDIFSATKYTK--ALDSLKKLRKDQSQE--VKTKKQELEHLKTLKERAEVLRLNIHSGQR 230 (1294)
T ss_pred ecccCCCCCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13665422211110 001111 124455666666665 344455566677677666666666666666
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc-cCCCCCC------
Q psy2772 463 GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC-NGTASLS------ 535 (746)
Q Consensus 463 ~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~-~~~~~~~------ 535 (746)
++......++++..+-+-.++.+.-||-. .++++++-.+-.+|+.+...+...+..++.... ....+..
T Consensus 231 ki~~~ke~v~e~e~e~~~~~~~i~ei~~~----~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~ 306 (1294)
T KOG0962|consen 231 KIEKSKEEVSELENELGPIEAKIEEIEKS----LKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELL 306 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Confidence 66666677777777777777766666544 478888888899999999888888887775422 0000000
Q ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 536 --NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 536 --~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
+.+....++..+.+++-=+++|..+|..|+++-..|.
T Consensus 307 ~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~ 345 (1294)
T KOG0962|consen 307 SNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELD 345 (1294)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245555777888888888899988888888766655
No 104
>KOG1853|consensus
Probab=80.75 E-value=30 Score=37.44 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=55.8
Q ss_pred hhhhhhhhhhhhh----hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhH
Q psy2772 433 HSRGRNICSVQGQ----AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAH-----------NSK 497 (746)
Q Consensus 433 lqelE~kLq~Lk~----DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSr-----------nSk 497 (746)
.++++...|.|+- .||++|.----.-+|+.+-.++-.++..|..|++--=++|-.---.|-+ --.
T Consensus 61 nrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeq 140 (333)
T KOG1853|consen 61 NRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQ 140 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHH
Confidence 4567777777765 4666666555555678888899999999999998877777654333322 124
Q ss_pred HHHHHHHHHhhhHHHHH
Q psy2772 498 KLEETVAANARLESELV 514 (746)
Q Consensus 498 ELE~twaEyaRLE~EV~ 514 (746)
+|-+|...||=||.||.
T Consensus 141 rLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 141 RLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56667777777777765
No 105
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.59 E-value=40 Score=40.15 Aligned_cols=37 Identities=14% Similarity=-0.070 Sum_probs=16.4
Q ss_pred eecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy2772 415 RIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLE 451 (746)
Q Consensus 415 ~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LE 451 (746)
....+..++.++++..+=+.+++..+..+....+.++
T Consensus 282 ~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~ 318 (908)
T COG0419 282 LLEELEEKIERLEELEREIEELEEELEGLRALLEELE 318 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544444444444333333333
No 106
>PRK11281 hypothetical protein; Provisional
Probab=80.40 E-value=53 Score=41.02 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 554 VGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 554 vggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
.+=++.||..+..++.++...-..|+..|+.
T Consensus 222 ~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 222 QDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666665555555555544
No 107
>KOG0976|consensus
Probab=80.27 E-value=30 Score=42.23 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=22.3
Q ss_pred ceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy2772 412 IRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKE 448 (746)
Q Consensus 412 ~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD 448 (746)
-+|.|-|||+-.|-..+..| |++++.+-+.|.++|-
T Consensus 252 s~i~E~d~~lq~sak~ieE~-m~qlk~kns~L~~ElS 287 (1265)
T KOG0976|consen 252 SMIEEQDMDLQASAKEIEEK-MRQLKAKNSVLGDELS 287 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Confidence 36888999998887666554 3445544444444443
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.01 E-value=1.2e+02 Score=34.68 Aligned_cols=103 Identities=23% Similarity=0.195 Sum_probs=69.8
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL 509 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL 509 (746)
+++..=+......+.+..+.|+.+|..+... -+.|+.||..|+.-+...+.+..+....+++--....+|
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~----------~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l 215 (420)
T COG4942 146 VRLAIYYGALNPARAERIDALKATLKQLAAV----------RAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL 215 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566677777778888877776543 456778888888888888888877776666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772 510 ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555 (746)
Q Consensus 510 E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg 555 (746)
+.++...+++|.+-.. ....|+.++-+++.=.+
T Consensus 216 ~~~l~~~q~~l~eL~~-------------~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 216 NSELSADQKKLEELRA-------------NESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHH
Confidence 6666666666665443 34457777777775444
No 109
>KOG0977|consensus
Probab=79.65 E-value=35 Score=39.65 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=73.3
Q ss_pred hhhhhhhhhhh------hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 423 ISRDQIASKLH------SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 423 lSr~ce~dKil------qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
.||..|+.-|. -.-=+|++.|..+--.|+.=|..++.--.....++ ...-|-||..+|..|...-
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~i---------k~~ye~El~~ar~~l~e~~ 105 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGI---------KAKYEAELATARKLLDETA 105 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcch---------hHHhhhhHHHHHHHHHHHH
Confidence 46777765542 22335678888888888888888887776665554 3346889999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
++-.++-.++.+|+.||..||.++....
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988773
No 110
>KOG0963|consensus
Probab=79.58 E-value=51 Score=38.98 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhcc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGV-HASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESE 512 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~-~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~E 512 (746)
|+.-++.-.|++.+.++-.-|.-+..+|-.- .++-.+--..-.+...-++|+.--+++++-+.++||.|=.-.--||.|
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555554333 222222222333334447788999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2772 513 LVVLRQKLQWS 523 (746)
Q Consensus 513 V~~LRqkLQaQ 523 (746)
+++||+.|...
T Consensus 258 ~e~L~~ql~~~ 268 (629)
T KOG0963|consen 258 VEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHhh
Confidence 99999999844
No 111
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.30 E-value=30 Score=35.31 Aligned_cols=34 Identities=6% Similarity=-0.068 Sum_probs=16.9
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 488 VRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 488 VRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
+..+.++..++|+.+=+++..||.++..++...+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555444
No 112
>PRK01156 chromosome segregation protein; Provisional
Probab=79.29 E-value=49 Score=38.95 Aligned_cols=95 Identities=21% Similarity=0.385 Sum_probs=57.2
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHH---HHHHHhhhccCCCCCCC
Q psy2772 460 KMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQK---LQWSRREVCNGTASLSN 536 (746)
Q Consensus 460 qME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqk---LQaQr~~~~~~~~~~~~ 536 (746)
+++....+=..++.+...-..+++.+.+++..+.....+++..=.+.++|+..+..++.. |.+.+..
T Consensus 651 ~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~---------- 720 (895)
T PRK01156 651 KIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIND---------- 720 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----------
Confidence 333333333333444444456667777777777777788888888888888888877775 3333321
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 537 GPSVAALEAELRRVQALVGDLQRQRQELSAQ 567 (746)
Q Consensus 537 ~qekAqLekELwRIQdVvggLsrQRqeLs~q 567 (746)
......++.++...+..|.+-|.-|..+
T Consensus 721 ---~~~~~~~l~~~~~~~~~l~~~r~~l~k~ 748 (895)
T PRK01156 721 ---INETLESMKKIKKAIGDLKRLREAFDKS 748 (895)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1112234666667777777777766654
No 113
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.19 E-value=38 Score=37.17 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhHhhhccC-CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Q psy2772 447 KEMLENALGSLRHKMHGVH-ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESEL 513 (746)
Q Consensus 447 KD~LEsAL~~L~qqME~~~-dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV 513 (746)
|-.+|+|+-.|+-.+.... |=-.|++.....+..++..+..++..|.+..+++.++-.....-|.-+
T Consensus 197 klEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i 264 (359)
T PF10498_consen 197 KLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI 264 (359)
T ss_pred HHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888865544444 337899999999999999999999999999999988887766666544
No 114
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.61 E-value=15 Score=41.43 Aligned_cols=87 Identities=22% Similarity=0.325 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH---HHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 483 RELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ---WSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 483 ~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ---aQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
+.|..++.+|++.++++...|.+-++||.++-.++..+- +++.. +.-.-..+++.+..+..-++.|+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~---------s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE---------TADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHHHhhHHHHHHHHHHHHH
Confidence 446666666666666666666666666666665554432 22211 111333355555555555555555
Q ss_pred HHHHHHHHHHHHhhhccccccc
Q psy2772 560 QRQELSAQVKQLTEKSNSLSQQ 581 (746)
Q Consensus 560 QRqeLs~qVrqLt~~s~~l~~q 581 (746)
|+ ..+=+.|++.-+.+++.
T Consensus 109 q~---r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 109 QE---REQRRRLAEQLAALQRS 127 (420)
T ss_pred HH---HHHHHHHHHHHHHHHhc
Confidence 54 33444455444444443
No 115
>PF13514 AAA_27: AAA domain
Probab=78.48 E-value=55 Score=40.01 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=32.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHG 463 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~ 463 (746)
....+....+..+=+..++.+|..++++.+.++.-+..+-..+.-
T Consensus 731 ~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 731 ALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 334445556666777778888888888888888877777766555
No 116
>KOG0996|consensus
Probab=78.42 E-value=49 Score=41.71 Aligned_cols=88 Identities=25% Similarity=0.269 Sum_probs=60.1
Q ss_pred hhhhhhhhhhhhhHHHH-HHHH-----HHHhHhh-----hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q psy2772 434 SRGRNICSVQGQAKEML-ENAL-----GSLRHKM-----HGVHASPAEVERYRRQQRLLERELSRVRSILAHN------- 495 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~L-EsAL-----~~L~qqM-----E~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn------- 495 (746)
.+++.+|..|+++-|.| |++. ..++.+| +.++-|-..++++-.|-.-|+-++.+.-+.+..+
T Consensus 861 ~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~ 940 (1293)
T KOG0996|consen 861 KELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKA 940 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHH
Confidence 45555566666666666 3333 3555553 3445677889999999999999999888776654
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 496 SKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.+++.++-.++.++|.++..|...+.
T Consensus 941 q~~l~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 941 QKKLSELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777777666655
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.36 E-value=23 Score=33.64 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
.++..|++.|.+||++. .....+++....+...|+.++..|..+.+.-+.-
T Consensus 40 ~~l~~~r~~l~~Eiv~l----~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 40 ARLEAERDELREEIVKL----MEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788888888873 3344556777788889999999999988888763
No 118
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=78.30 E-value=0.68 Score=54.77 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHH--------------HHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLE--------------NALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSI 491 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LE--------------sAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRae 491 (746)
..++-|-++.+...|.-|+.+-|.-. +-+..|..+++.... ..+.+...++.+|.||.-+...
T Consensus 569 ~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~---~~~~a~r~rk~aE~el~e~~~~ 645 (859)
T PF01576_consen 569 NEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELRE---ALEQAERARKQAESELDELQER 645 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666655554444322 223334444444443 3444555688899999999998
Q ss_pred HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 492 LAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTA-SLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 492 LSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~-~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrq 570 (746)
|+..++.-....++-.+||.+|..|...|-+...+...... .--...+.+.|..||.--|+....|.+.|..|-.||+.
T Consensus 646 ~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~ke 725 (859)
T PF01576_consen 646 LNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKE 725 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777888899999999999999887754322100 00123677889999999999999999999999999999
Q ss_pred HhhhcccccccccCC
Q psy2772 571 LTEKSNSLSQQIRPG 585 (746)
Q Consensus 571 Lt~~s~~l~~qi~~~ 585 (746)
|..+-..+.+...++
T Consensus 726 Lq~rl~e~E~~~~~~ 740 (859)
T PF01576_consen 726 LQARLEEAEQSALKG 740 (859)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhhhcc
Confidence 999888887555443
No 119
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.24 E-value=87 Score=31.75 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=94.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 420 IHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHN 495 (746)
Q Consensus 420 d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrn 495 (746)
-.++.+.-++--.+.++..+++.|..|-..|...--.-..-+..|.++ |.-+.+-..--+.|...|-+........
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666788888888888888777777655533337777544 7777777777788888888888888888
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 496 SKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrq 570 (746)
+.+|=.+=.+.-+++.++..|++-.... .. .+...|+++|-.++..|.+--+.=++|..+++-
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~L~~dk----nL--------~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKKLSEDK----NL--------AEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----Cc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777777777766543311 11 255667777777777776666666666655543
No 120
>KOG0946|consensus
Probab=77.03 E-value=55 Score=40.04 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=59.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhccCCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 506 NARLESELVVLRQKLQWSRREVCNGTASLSN-GPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 506 yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~-~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
+.-++.++..+++..|+-....++.+++++. +.+-.-+-.|+.+|+.-...|+..=+++.+-+..|||+-.+|.+|-..
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
Confidence 5666777777777777666554554444443 234445678999999988899988999999999999998888866655
Q ss_pred CC
Q psy2772 585 GP 586 (746)
Q Consensus 585 ~~ 586 (746)
..
T Consensus 888 e~ 889 (970)
T KOG0946|consen 888 ET 889 (970)
T ss_pred hH
Confidence 53
No 121
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.83 E-value=41 Score=34.00 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred hhhhhhhhhhhhhhhhhhhHHH-------HHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEM-------LENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE 500 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~-------LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE 500 (746)
+...||+.-.+.|+.|+...-+ ++.=|--...+|..-.+.-.+.+++..-++|.|++= .-..|+...++|+
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eRee--L~~kL~~~~~~l~ 135 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREE--LQRKLSQLEQKLQ 135 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH--HHHHHHHHHHHHH
Confidence 3445555555555555544333 333333344445555566667777777777776642 2456777778888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQE 563 (746)
Q Consensus 501 ~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqe 563 (746)
.+=..+..||..+...-...+.|... ...-+..++.|+...+.=+..|...-+|
T Consensus 136 ~~~~ki~~Lek~leL~~k~~~rql~~---------e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 136 EKEKKIQELEKQLELENKSFRRQLAS---------EKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777666655532 1123444555665555555555544443
No 122
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.71 E-value=40 Score=36.74 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=59.6
Q ss_pred hhhhhhhhhhhhhhH-------HHHHHHHHHHhHhhhccCCChHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Q psy2772 433 HSRGRNICSVQGQAK-------EMLENALGSLRHKMHGVHASPAEVE-----------RYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 433 lqelE~kLq~Lk~DK-------D~LEsAL~~L~qqME~~~dqPa~~E-----------Ki~~QQrlLE~eLsrVRaeLSr 494 (746)
++++|..+..|+.|+ |.||-||.--+++.+....+-+.+. .+...+.-|.-||-.--.++.=
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 467777777787775 7899999999999887766544432 2233333333333332222322
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 495 NSKKLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 495 nSkELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
.-..|..+-....+||+|+..+|..|.-+...
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666667788999999999888855443
No 123
>KOG0249|consensus
Probab=76.47 E-value=69 Score=38.86 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=73.6
Q ss_pred ecchhhhhh-hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhH-------------hh-------hccCCChHHHHHH
Q psy2772 416 IGVMIHAIS-RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRH-------------KM-------HGVHASPAEVERY 474 (746)
Q Consensus 416 e~d~d~klS-r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~q-------------qM-------E~~~dqPa~~EKi 474 (746)
+.|..-||. -+..+|-.|.-.++++.+|++--+.+|.-|...+. .| ++...-|..++|.
T Consensus 89 ~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl 168 (916)
T KOG0249|consen 89 IHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKL 168 (916)
T ss_pred cccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 345555554 34567888888888888888877777665554432 11 2233346677777
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 475 RRQQRLLERELSRVRSILA------------------HNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 475 ~~QQrlLE~eLsrVRaeLS------------------rnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
..|-.-|--||-|.|..+- -.+||.-.|-.+-.||++++..+|+.|.+-+
T Consensus 169 ~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~ 236 (916)
T KOG0249|consen 169 EEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMR 236 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776442 2347777888888999999999999887654
No 124
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.45 E-value=99 Score=32.11 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 540 VAALEAELRRVQALVGDLQRQRQEL 564 (746)
Q Consensus 540 kAqLekELwRIQdVvggLsrQRqeL 564 (746)
...|++.+.+.+.-+..+..++..|
T Consensus 115 ~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 115 VEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444443
No 125
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=76.39 E-value=46 Score=34.47 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNS---KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.+.+..+-...++++.|.+.+..+.. .++|++-++|...+.++..+++.+.
T Consensus 116 l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~ 169 (331)
T PRK03598 116 VKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLS 169 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666677766666652 7888888888888888888887776
No 126
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.17 E-value=60 Score=37.34 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.+|++.=+..+.||.++..||+.++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556667888888877776
No 127
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.98 E-value=85 Score=31.00 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQV 568 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qV 568 (746)
....|+..|.+++.-+..|...|..|..+.
T Consensus 113 ~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 113 QVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555443
No 128
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=75.80 E-value=44 Score=36.88 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVA 504 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twa 504 (746)
.+-.-.++|||||.|+..--.|+.+-..|-|-
T Consensus 70 elneEkrtLeRELARaKV~aNRVA~vvANEWK 101 (351)
T PF07058_consen 70 ELNEEKRTLERELARAKVSANRVATVVANEWK 101 (351)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 33445789999999999999999888887775
No 129
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.58 E-value=1e+02 Score=37.75 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=58.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh----hhc-----------cCCChHHHHHHHHHHHHHHHHHHHHH
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHK----MHG-----------VHASPAEVERYRRQQRLLERELSRVR 489 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq----ME~-----------~~dqPa~~EKi~~QQrlLE~eLsrVR 489 (746)
..+...+-+..++..+..+......++..+..+... |.. ..-++..++.++.+...+++.+...+
T Consensus 718 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 797 (1047)
T PRK10246 718 NWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQ 797 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544444444444333332 221 22356677788888888889888888
Q ss_pred HHHHhhhHHHHH----H------HHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 490 SILAHNSKKLEE----T------VAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 490 aeLSrnSkELE~----t------waEyaRLE~EV~~LRqkLQaQr~ 525 (746)
..+++.-+.|++ . -.+...|+..+..+++.+.+...
T Consensus 798 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 843 (1047)
T PRK10246 798 TLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTT 843 (1047)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888777666665 2 22445566677766666665543
No 130
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=75.02 E-value=96 Score=31.54 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 484 ELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
-|..+...|.+.-..++.+......||.+|..+.+.|.
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 131
>KOG0239|consensus
Probab=74.93 E-value=71 Score=37.86 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=91.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhH---hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRH---KMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~q---qME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw 503 (746)
-+.++.+.++....+.|...+++.+.+...++. +...+.++....+..+.+=.-|+.....++..|.....+|+..-
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~ 254 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELK 254 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655555 23333333222233333445566777777777888888888888
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 504 AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 504 aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
++...|+.++..+.+.+|+.+..... ....|..+-..+.+.. .=..+|..|-+++-+|.-+--. +-.++
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV-~CRvR 323 (670)
T KOG0239|consen 255 AELKELNDQVSLLTREVQEALKESNT---------LQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRV-FCRVR 323 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceE-EEEec
Confidence 88888888888888888888763221 2233333333333333 3347788888888888765433 33455
Q ss_pred CCCc
Q psy2772 584 PGPT 587 (746)
Q Consensus 584 ~~~~ 587 (746)
|.-.
T Consensus 324 P~~~ 327 (670)
T KOG0239|consen 324 PLLP 327 (670)
T ss_pred CCCc
Confidence 5433
No 132
>KOG4674|consensus
Probab=74.66 E-value=95 Score=40.82 Aligned_cols=116 Identities=24% Similarity=0.268 Sum_probs=82.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC--h----HHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS--P----AEVERYRRQQRLLE-------RELSRVRSILAHNSKKLE 500 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq--P----a~~EKi~~QQrlLE-------~eLsrVRaeLSrnSkELE 500 (746)
+++.++|+.|+.++.-|+..|..+..+|..-... . ++--|.|+ |++++ +++-+.-.++++...||+
T Consensus 1246 qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~-q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1246 QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN-QDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888777775543311 1 11223333 33444 367777779999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 501 ~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
+.=+.++-|+.++..+|.+++.+...- -.+.+.+.+++.++.++-.-|-.
T Consensus 1325 ~ke~~~~el~~~~~~~q~~~k~qld~l---------~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1325 EKENLIAELKKELNRLQEKIKKQLDEL---------NNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888642 24777788888777776555443
No 133
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.64 E-value=70 Score=32.54 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=84.4
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANA 507 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEya 507 (746)
..-++-+....++..+.++|..|+.-+..+..+++. +..+.+.|++.+...+.+|+...+++++.-....
T Consensus 32 ~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~----------L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 32 QWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIEN----------LEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556667788888888888877777776654 4556888888888999999999999988888888
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 508 RLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 508 RLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
.|.--+..+-..|+.-.. + |.+-. .+.-..||+.+-.-|.+---.++...|.+=
T Consensus 102 ~l~p~m~~m~~~L~~~v~---~-----d~Pf~---~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vl 155 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQFVE---L-----DLPFL---LEERQERLARLRAMLDDADVSLAEKFRRVL 155 (251)
T ss_pred HHHHHHHHHHHHHHHHHh---c-----CCCCC---hHHHHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence 888888888888876543 2 12211 223355666666656555555555555553
No 134
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=74.62 E-value=82 Score=34.52 Aligned_cols=95 Identities=20% Similarity=0.107 Sum_probs=63.3
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQ-QRLLERELSRVRSILAHNSKKLEETVAANAR 508 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~Q-QrlLE~eLsrVRaeLSrnSkELE~twaEyaR 508 (746)
+..+.++...++.-+......+..|..+.+......+..+-.+.+.-+ -..|.++...++.+++..++++-..=.+-..
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~ 317 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVA 317 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHh
Confidence 556666777777788888888888888888887777544444444443 4445555577777777777776666566666
Q ss_pred hHHHHHHHHHHHHHHH
Q psy2772 509 LESELVVLRQKLQWSR 524 (746)
Q Consensus 509 LE~EV~~LRqkLQaQr 524 (746)
++.++..+++.+++-.
T Consensus 318 ~~~q~~~~~~~~~~e~ 333 (458)
T COG3206 318 LEAQLAELRQQIAAEL 333 (458)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665544
No 135
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.56 E-value=67 Score=31.45 Aligned_cols=42 Identities=31% Similarity=0.225 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkL 520 (746)
..||+||-.+-..+..+..+.|++=++...|+.++.++.+.|
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el 68 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSEL 68 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=74.50 E-value=39 Score=39.21 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHH
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN----ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL 547 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy----aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekEL 547 (746)
+...-|-+-|.+....++ .|++.-+.|++-|++. -++|+-+..|++|.|+-.. --.+|+.|+
T Consensus 274 ~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g-------------~l~kl~~ei 339 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG-------------KLEKLKSEI 339 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch-------------HHHHHHHHH
Confidence 333444555555555544 5677788899999875 4688899999999985432 345689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 548 RRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 548 wRIQdVvggLsrQRqeLs~qVrq 570 (746)
--.+.=+..|+.++.+|-.||+.
T Consensus 340 e~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 340 ELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999998874
No 137
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.42 E-value=45 Score=37.60 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHHHhHhhhcc
Q psy2772 443 QGQAKEMLENALGSLRHKMHGV 464 (746)
Q Consensus 443 Lk~DKD~LEsAL~~L~qqME~~ 464 (746)
|+.|++.+..=+..+..||++.
T Consensus 279 l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 279 LKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 138
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=73.98 E-value=97 Score=33.48 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=20.4
Q ss_pred eecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy2772 415 RIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLEN 452 (746)
Q Consensus 415 ~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEs 452 (746)
..+|+...|+-.... .=+...+.++.+++...+.|+.
T Consensus 81 ~kGq~L~~l~~~~~~-~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 81 KKGQVVARLFQPELR-ERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CCCCEEEEECcHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444332 2245667777777777766664
No 139
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=73.86 E-value=1.1e+02 Score=31.18 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQ 551 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQ 551 (746)
+.+...=.-||++|..|...|-.....-+++-..-..+|..+..|.++|.+.- .+.. +.-.....|++++-+++
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE-~Rae-----~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE-NRAE-----FAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHH
Confidence 34444555677777777666666555556666666888888999999988654 2222 12245566788888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2772 552 ALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 552 dVvggLsrQRqeLs~qVrq 570 (746)
+=+.........++.-+++
T Consensus 211 ~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766644
No 140
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.66 E-value=1.1e+02 Score=35.23 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
+..+...|+.++.....++.....++++.=++..+++.++..+++.+.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444333
No 141
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.49 E-value=34 Score=34.93 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTE 573 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~ 573 (746)
|+.|..+.+.-++.++....+|..+.+.+.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555556555555544
No 142
>KOG4673|consensus
Probab=73.45 E-value=1e+02 Score=37.52 Aligned_cols=145 Identities=19% Similarity=0.102 Sum_probs=85.0
Q ss_pred eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhh--------hccCCChHHHHHHHHHHHHHHHH
Q psy2772 413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKM--------HGVHASPAEVERYRRQQRLLERE 484 (746)
Q Consensus 413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqM--------E~~~dqPa~~EKi~~QQrlLE~e 484 (746)
||.+.+.-++ ..-++=+.|+..+++|.+..++|+..|+.+.-.--+| +-|...-+-++.+.-|-.-+|.-
T Consensus 482 k~ke~etl~~--K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat 559 (961)
T KOG4673|consen 482 KIKEAETLEE--KKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQAT 559 (961)
T ss_pred HhhhhhHHHH--HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 4555553332 2345566788888888888888888888765432222 22333345556666666666666
Q ss_pred HHHHHHHH-HhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 485 LSRVRSIL-AHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQE 563 (746)
Q Consensus 485 LsrVRaeL-SrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqe 563 (746)
+-..|..| -+|--|=+++-++-.-|=+.|.-||++|+--- ++.. -.--+|.-|+.-+|.-+..-.+.-+|
T Consensus 560 ~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E--q~aa-------rrEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 560 NDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE--QQAA-------RREDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred hhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666645 44555556777777778888889999998332 1110 12234455544444444444455566
Q ss_pred HHHHH
Q psy2772 564 LSAQV 568 (746)
Q Consensus 564 Ls~qV 568 (746)
|.++|
T Consensus 631 l~q~v 635 (961)
T KOG4673|consen 631 LIQQV 635 (961)
T ss_pred HHhhc
Confidence 66665
No 143
>KOG0250|consensus
Probab=72.85 E-value=93 Score=38.98 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=46.0
Q ss_pred hhhhhHHhHHHHHHHHHhhhccCCChhhhHHHHHHHHhcccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHH
Q psy2772 190 SSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLD 267 (746)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~ 267 (746)
++-.||..-++-=|-||.+-.||.+- ++-.+++|- |-+..- +.+.+| |.+||+++-++-|.+
T Consensus 142 ~~S~~~~~~~~~grvVStKk~dl~~v--------v~~f~I~ve-------NP~~~lsQD~aR~F-L~~~~p~dkYklfmk 205 (1074)
T KOG0250|consen 142 SSSTYYLLRSANGRVVSTKKEDLDTV--------VDHFNIQVE-------NPMFVLSQDAARSF-LANSNPKDKYKLFMK 205 (1074)
T ss_pred ccchHHHHhhccCccccccHHHHHHH--------HHHhCcCCC-------CcchhhcHHHHHHH-HhcCChHHHHHHHHH
Confidence 34455554466677788877776542 344555552 332222 445556 889999998888887
Q ss_pred HHhccccceec
Q psy2772 268 RNLAENISRVL 278 (746)
Q Consensus 268 r~~AEnITrVL 278 (746)
--.-++|+.-|
T Consensus 206 aT~L~qi~~~~ 216 (1074)
T KOG0250|consen 206 ATQLEQITESY 216 (1074)
T ss_pred HhHHHHHHHHH
Confidence 77777777653
No 144
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=72.81 E-value=1.3e+02 Score=33.89 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhh
Q psy2772 541 AALEAELRRVQALVGDLQ------RQRQELSAQVKQLTE 573 (746)
Q Consensus 541 AqLekELwRIQdVvggLs------rQRqeLs~qVrqLt~ 573 (746)
..|...|..++.++.+.. ++-|.|..++..|..
T Consensus 381 ~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~ 419 (582)
T PF09731_consen 381 AELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKS 419 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666555543 223444445544443
No 145
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.64 E-value=73 Score=37.28 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMH 462 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME 462 (746)
++.+=++++...|+.|..+.+.++..+..+..+|.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~ 359 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLK 359 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544444444433
No 146
>KOG4460|consensus
Probab=72.48 E-value=11 Score=44.02 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=27.5
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRV 488 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrV 488 (746)
+|++.-++..-+-.|++-||+=-.-|.-++++++..+.+ ..-.|++.|-|++|++-+-+.
T Consensus 579 ~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 579 QDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344544555555555555554444444444444433332 122344555555555544443
No 147
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.28 E-value=65 Score=31.08 Aligned_cols=83 Identities=17% Similarity=0.344 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 447 KEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 447 KD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
|-.|.+|...+-.||++.. +.++-.++-|. ..|.++..+|++.-+-...+..||..+|..+-
T Consensus 38 rr~m~~A~~~v~kql~~vs------~~l~~tKkhLs-------qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~----- 99 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVS------ESLSSTKKHLS-------QRIDRVDDKLDEQKEISKQIKDEVTEVREDVS----- 99 (126)
T ss_pred HHhHHHHHHHHHHHHHHHH------HHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-----
Confidence 3445556555555555544 22333333222 33456667777777777777777766665544
Q ss_pred hccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 527 VCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQ 562 (746)
Q Consensus 527 ~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRq 562 (746)
++..|+..|+.+|.+|.-.=.
T Consensus 100 ---------------~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 100 ---------------QIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888865433
No 148
>KOG0994|consensus
Probab=71.95 E-value=60 Score=41.22 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=45.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHH
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS---KKLEET 502 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~t 502 (746)
|.--|.||++|..+...|-.--..|+.. . .+..++---.-+|+-|..||..|+.-| ..+|+.
T Consensus 1166 F~~WD~il~~L~~rt~rl~~~A~~l~~t-----------G----v~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l 1230 (1758)
T KOG0994|consen 1166 FQTWDAILQELALRTHRLINRAKELKQT-----------G----VLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQL 1230 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------c----CchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4567999999999988886654444431 1 111222223456777888888885543 234444
Q ss_pred HHHHhhhHHHHHHHHHHH
Q psy2772 503 VAANARLESELVVLRQKL 520 (746)
Q Consensus 503 waEyaRLE~EV~~LRqkL 520 (746)
..+...|+..|-.++.+|
T Consensus 1231 ~~~~~~lr~~l~~~~e~L 1248 (1758)
T KOG0994|consen 1231 ASATESLRRQLQALTEDL 1248 (1758)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 444444444444444443
No 149
>KOG4674|consensus
Probab=71.82 E-value=56 Score=42.71 Aligned_cols=113 Identities=24% Similarity=0.238 Sum_probs=79.7
Q ss_pred hhhhhhhhhh-HHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHH
Q psy2772 437 RNICSVQGQA-KEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVV 515 (746)
Q Consensus 437 E~kLq~Lk~D-KD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~ 515 (746)
-.+..+..++ +..||+=+..|.++|..+. .|-.+|+.+|.-+|.+|...+.+..+.--+.+++...+.+
T Consensus 43 ~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~----------~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~ 112 (1822)
T KOG4674|consen 43 DGKTEVNHEQQLSELEKKILRLEQRLSDLS----------RQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQ 112 (1822)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHH
Confidence 3445555555 6667777777777776654 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 516 LRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 516 LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
||++.-+-.. ++.+|...|.|.++=+++|.--=..|..|+.-++
T Consensus 113 l~~~~se~~~-------------qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~ 156 (1822)
T KOG4674|consen 113 LRRAKSELQE-------------QKRQLMELLERQKAELEALESENKDLNDQLKSST 156 (1822)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987653321 5666666666666555555444444444444444
No 150
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=71.72 E-value=81 Score=31.50 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHH
Q psy2772 474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQAL 553 (746)
Q Consensus 474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdV 553 (746)
.+.+.+.++++...+...+...-++|+.+...|.++..|....++++..--. +.....+.++|=-.+++.-
T Consensus 103 ~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~---------~~~~s~~~~eK~~~k~~k~ 173 (251)
T cd07653 103 LRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADA---------DMNLTKADVEKAKANANLK 173 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhccchhhHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999874221 1122334455544555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy2772 554 VGDLQRQRQELSAQVKQLTEK 574 (746)
Q Consensus 554 vggLsrQRqeLs~qVrqLt~~ 574 (746)
...+..-|.+...+|..+...
T Consensus 174 ~~~~~~a~~~Y~~~l~~~N~~ 194 (251)
T cd07653 174 TQAAEEAKNEYAAQLQKFNKE 194 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888877543
No 151
>PRK01156 chromosome segregation protein; Provisional
Probab=71.72 E-value=94 Score=36.72 Aligned_cols=6 Identities=33% Similarity=0.529 Sum_probs=2.3
Q ss_pred cccccc
Q psy2772 77 TGVAGK 82 (746)
Q Consensus 77 ~~~~g~ 82 (746)
|.+.|.
T Consensus 26 ~~I~G~ 31 (895)
T PRK01156 26 NIITGK 31 (895)
T ss_pred EEEECC
Confidence 333333
No 152
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=71.23 E-value=30 Score=27.56 Aligned_cols=69 Identities=9% Similarity=0.171 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHhHh---hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHH
Q psy2772 442 VQGQAKEMLENALGSLRHK---MHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLES 511 (746)
Q Consensus 442 ~Lk~DKD~LEsAL~~L~qq---ME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~ 511 (746)
.++.-.+.|+..+..++.. |...|. -.+.+.+......+...+.+++..|....+.|..+-..|..-|+
T Consensus 15 ~~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~d~ 86 (86)
T PF06013_consen 15 QLQAQADELQSQLQQLESSIDSLQASWQ-GEAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQNYEQADQ 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333333344444444433 233343 44667777778899999999999999999999999888876653
No 153
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=71.09 E-value=39 Score=35.69 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=69.2
Q ss_pred ceeeecchhhhhhhhhhhhhhhhh------hhhhhhhhhhhHHHHHHHHHHHhHhhhccCC-ChHHHHHHHHHHHHHHHH
Q psy2772 412 IRIRIGVMIHAISRDQIASKLHSR------GRNICSVQGQAKEMLENALGSLRHKMHGVHA-SPAEVERYRRQQRLLERE 484 (746)
Q Consensus 412 ~ri~e~d~d~klSr~ce~dKilqe------lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~d-qPa~~EKi~~QQrlLE~e 484 (746)
.+-.-...+.+|..|..+..++.- ....++.|+.+.-.+|.-|..++. .|.+ +|. +..++.|...|++.
T Consensus 182 ~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~---~~~~~~P~-v~~l~~~i~~l~~~ 257 (362)
T TIGR01010 182 AEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS---ITPEQNPQ-VPSLQARIKSLRKQ 257 (362)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCc-hHHHHHHHHHHHHH
Confidence 444455566667777766666531 234467777777777776666554 3444 454 44556666777777
Q ss_pred HHHHHHHHHhh-hHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 485 LSRVRSILAHN-SKKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 485 LsrVRaeLSrn-SkELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
|...+..+... ...|-..-.+|.+|++|++..++.++.-
T Consensus 258 i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~ 297 (362)
T TIGR01010 258 IDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAA 297 (362)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555443 3456777789999999999988777643
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.00 E-value=31 Score=35.79 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=6.3
Q ss_pred HHhhhHHHHHHHHH
Q psy2772 505 ANARLESELVVLRQ 518 (746)
Q Consensus 505 EyaRLE~EV~~LRq 518 (746)
||.+|-.+|..+|.
T Consensus 89 ey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 89 EYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 155
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=70.85 E-value=87 Score=31.19 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCC------CcchHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSN------GPSVAALE 544 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~------~qekAqLe 544 (746)
.|.++....-|++||..|+.+++++. .+-++||..--..|+.|-+==.+-.. +.. -.+...+|
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I-------~evD~Le~~er~aR~rL~eVS~~f~~----ysE~dik~AYe~A~~lQ 90 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVI-------EEVDKLEKRERQARQRLAEVSRNFDR----YSEEDIKEAYEEAHELQ 90 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcc----cCHHHHHHHHHHHHHHH
Confidence 35556666677777777777776655 45567888888888888532211111 000 03445577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcccccccc
Q psy2772 545 AELRRVQALVGDLQRQRQELSAQVKQLT---EKSNSLSQQI 582 (746)
Q Consensus 545 kELwRIQdVvggLsrQRqeLs~qVrqLt---~~s~~l~~qi 582 (746)
.+|--.+.=...|...|.+|....++|- ++.+.|.-||
T Consensus 91 ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 91 VRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888889999999988888776 5555555444
No 156
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.53 E-value=1.5e+02 Score=32.54 Aligned_cols=131 Identities=20% Similarity=0.207 Sum_probs=75.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHhhhHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLE---RELSRVRSILAHNSKKLEETVAANARLES 511 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE---~eLsrVRaeLSrnSkELE~twaEyaRLE~ 511 (746)
.|..||+.|.++-..|..--..|...-..|..+ .|| |+. ++|.....+|+..|.+|.+-..+|.|...
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek--------Eqq-Lv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEK--------EQQ-LVLDCVKQLSEANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH--------HHH-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777776666666666554444422 222 333 77888888888888888888888888888
Q ss_pred HHHHHHHHHHHH-HhhhccCCC------CCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 512 ELVVLRQKLQWS-RREVCNGTA------SLS-NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK 574 (746)
Q Consensus 512 EV~~LRqkLQaQ-r~~~~~~~~------~~~-~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~ 574 (746)
||..|...+-.- ..-...+.- .+. .-....+|..||.-.|+--+.+..-=+|.-..+|+|+.+
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 888776543211 110001000 000 001123366777777766666666656666666666543
No 157
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.35 E-value=83 Score=28.37 Aligned_cols=115 Identities=16% Similarity=0.256 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHhHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 445 QAKEMLENALGSLRHKMHGVHAS-PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 445 ~DKD~LEsAL~~L~qqME~~~dq-Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
++-..++.+|+.-+..++.-... -..-+.+...+..|+++++....-|..|-.+..+|.. .+=++.
T Consensus 7 re~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k-------------~a~~e~ 73 (126)
T PF13863_consen 7 REMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEK-------------RAEEEK 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------------HHHHHH
Confidence 33344455555555544333322 3344455666666677666666666666555554422 222222
Q ss_pred HhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q psy2772 524 RREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGP 586 (746)
Q Consensus 524 r~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~~ 586 (746)
..+...+.|+.++..-++.|...++.+...|.++.-.-+=|..-+.+.|
T Consensus 74 --------------k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~ 122 (126)
T PF13863_consen 74 --------------KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSP 122 (126)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2455678899999999999999999999999999888777776555554
No 158
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.68 E-value=27 Score=30.04 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
+-.|++||..|+..--....+|..+=.-|.-|+++|..|+..|.+.+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999999999999999999999997654
No 159
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.89 E-value=10 Score=42.11 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=17.4
Q ss_pred ccCCCCCCccccccCCCCCCCC--cCCCCCCCC
Q psy2772 609 SKSGLDPTGVAVDTRIPNPCSL--SLGLYPWDD 639 (746)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 639 (746)
-.+|.|-.+|.+-----+|+.- .-=|+||.-
T Consensus 232 Q~TGeDW~~V~LtLsTa~P~~~~~~P~L~~w~i 264 (525)
T TIGR02231 232 QSTGEDWSDIPLVLSTAQPSLGGRIPELGPLYA 264 (525)
T ss_pred eCCCCCCCCCcEEEeccCCCCCCCCCccccEEE
Confidence 4688888888665444444431 123566643
No 160
>KOG0964|consensus
Probab=68.89 E-value=78 Score=39.55 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=61.7
Q ss_pred hhhhhhhhccccCcccccceeEEEE-EeeeccccccccccccccccccccccCCCCcceeeecchhhhhhhhhh------
Q psy2772 356 YPKSDNIILPRKQHLFLDSVIWYIS-LLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQI------ 428 (746)
Q Consensus 356 IPELmRIL~de~gl~wdeAv~wdIt-~aYTNHTILpEALEkWpv~~~l~irvrp~~p~ri~e~d~d~klSr~ce------ 428 (746)
=-|+|+||- --|++..-- ++|+ =.-+|-+..+.--|+. .+ .+-+--.|+++-+-..-|+.|.|
T Consensus 118 k~evvnLLE-SAGFSrsNP--YyIV~QGkI~~La~akD~eRL--~L-----LkeVaGtrvYeerreeSlkim~ET~qK~e 187 (1200)
T KOG0964|consen 118 KGEVVNLLE-SAGFSRSNP--YYIVPQGKINELANAKDSERL--EL-----LKEVAGTRVYEERREESLKIMEETKQKRE 187 (1200)
T ss_pred HHHHHHHHH-hcCcccCCC--ceEeechhhHHhhcCCcHHHH--HH-----HHHhcccchhHHhHHHHHHHHHHHhhhHH
Confidence 348899885 578888887 8888 3333333333222222 22 23455678888888888888876
Q ss_pred -hhhhhhhhhhhhhhhhhhHHHHHH
Q psy2772 429 -ASKLHSRGRNICSVQGQAKEMLEN 452 (746)
Q Consensus 429 -~dKilqelE~kLq~Lk~DKD~LEs 452 (746)
.+.+|+.++++|+.|.++|+.|+.
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~ 212 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEK 212 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 467999999999999999999986
No 161
>KOG0239|consensus
Probab=68.84 E-value=75 Score=37.69 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 476 RQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ 518 (746)
Q Consensus 476 ~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRq 518 (746)
.+...++.|+.....+|-++....++.+.+-.++..+-..|..
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~ 217 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLAD 217 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4445555555555555555555555544444443333333333
No 162
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.60 E-value=36 Score=29.59 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 482 ERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 482 E~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
+.++.+++.+=......|=.+-.++.+|=.|++.||+.|.+.+
T Consensus 25 ~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 25 EIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677778888888888899999999999999999999998765
No 163
>KOG0240|consensus
Probab=68.49 E-value=78 Score=37.40 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 538 PSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 538 qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
..-..++.|+|+||..+..-...=.|.-++..+|+++-+...++..
T Consensus 463 ~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~ 508 (607)
T KOG0240|consen 463 RLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKE 508 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 4455679999999996655444444555667777766555554443
No 164
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=67.22 E-value=37 Score=30.64 Aligned_cols=40 Identities=15% Similarity=-0.129 Sum_probs=20.5
Q ss_pred eecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy2772 415 RIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENAL 454 (746)
Q Consensus 415 ~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL 454 (746)
+....|.+...+-.+-.-++..+.+|..|.+.++.....+
T Consensus 11 r~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~ 50 (141)
T TIGR02473 11 REKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQA 50 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555666655555554433
No 165
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.17 E-value=2.4e+02 Score=32.40 Aligned_cols=91 Identities=13% Similarity=0.242 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----------HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHH
Q psy2772 476 RQQRLLERELSRVRSILAHNSKKLEETVAA----------NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEA 545 (746)
Q Consensus 476 ~QQrlLE~eLsrVRaeLSrnSkELE~twaE----------yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLek 545 (746)
+-+..+...|.+++.+.-...+|++..-.. ...++.++..|...+..-...... ....-..++.
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~------~~~~ysel~e 383 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAE------QEIAYSELQE 383 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCHHHHHH
Confidence 334445555555555555555555444444 334555555555544432211111 1112334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 546 ELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 546 ELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
++..+..-+..+..++.++...+..|+
T Consensus 384 ~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 384 ELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444444444443
No 166
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.76 E-value=49 Score=33.67 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=15.5
Q ss_pred cCCCCcccccccccccccccccC
Q psy2772 655 KTSHGWLETDLDMNSTLDVAIES 677 (746)
Q Consensus 655 ~~~~~w~etdld~~~~~d~~~~~ 677 (746)
....+|..-|-+....+..|+.-
T Consensus 209 ~~~~~W~~l~~~~~~~i~~ai~i 231 (251)
T PF11932_consen 209 PATGQWQWLPDSYRREIRKAIRI 231 (251)
T ss_pred CCCCCCeECCHHHHHHHHHHHHH
Confidence 44458888766777777776654
No 167
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=66.68 E-value=2.2e+02 Score=33.71 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=15.1
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHH
Q psy2772 461 MHGVHASPAEVERYRRQQRLLERELSRV 488 (746)
Q Consensus 461 ME~~~dqPa~~EKi~~QQrlLE~eLsrV 488 (746)
++.-.++.+.+-++..|-+-|.++|.-.
T Consensus 145 Le~lqsdk~t~SRAlsQN~eLK~QL~El 172 (617)
T PF15070_consen 145 LEQLQSDKATASRALSQNRELKEQLAEL 172 (617)
T ss_pred HhhhcccchHHHHHHHhHHHHHHHHHHH
Confidence 3444455556666666666555555443
No 168
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=66.67 E-value=1.2e+02 Score=31.92 Aligned_cols=129 Identities=17% Similarity=0.040 Sum_probs=68.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANA-RLESEL 513 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEya-RLE~EV 513 (746)
=++..+..+-.--+++|..++.+..++.....+ +...+=..|+++|+..|.-|+-+..-+-..-.... .+..|.
T Consensus 144 lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~-----~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~ 218 (322)
T COG0598 144 LLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN-----EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEED 218 (322)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHH
Confidence 344444455555555555555555565555544 44555667888888888888776554444443332 333333
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 514 VVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 514 ~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
..+=+.++..... .......+...|..+.|+..++-.+++ ..-|+.||--+--+-
T Consensus 219 ~~~l~dv~~~~~~---------~~~~~~~~~~~l~~l~d~~~s~is~~~--N~imk~LTi~s~ifl 273 (322)
T COG0598 219 REYLRDVLDHLTQ---------LIEMLEALRERLSSLLDAYLSLINNNQ--NEIMKILTIVSTIFL 273 (322)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 2222222211110 011334456666666666666665543 456777776666655
No 169
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.27 E-value=67 Score=31.38 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=41.3
Q ss_pred hhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2772 442 VQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEE 501 (746)
Q Consensus 442 ~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~ 501 (746)
.+......++.++..++.+|.... -.+...++.+-..|++|+-.++++|.....+|..
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~--k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSR--KSEFAELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677888888877643 3467778888888888888888887776665555
No 170
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=65.93 E-value=19 Score=37.88 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=18.7
Q ss_pred ccccccccccccccccCCC---Ccceeeecchhhhhhh
Q psy2772 391 LACGPWKVHAELPIRVRPV---SPIRIRIGVMIHAISR 425 (746)
Q Consensus 391 EALEkWpv~~~l~irvrp~---~p~ri~e~d~d~klSr 425 (746)
++.+.|.+.+...=++.-+ .=-++..+|+...|.-
T Consensus 57 ~~~~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 57 DALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EeeeEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 5667777776655433221 1234555666666643
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.55 E-value=66 Score=36.46 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=31.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHH
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLER 483 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~ 483 (746)
+++....|..-...||.+-..++..++....+|...+.+...-..++.
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 344455555556667777777777777778889998886555444444
No 172
>KOG0995|consensus
Probab=65.30 E-value=88 Score=36.86 Aligned_cols=75 Identities=24% Similarity=0.242 Sum_probs=43.3
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772 424 SRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKK 498 (746)
Q Consensus 424 Sr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkE 498 (746)
++.+..++.|..+...|-.-..+-+.|-.--+.||.+++.-+=+++.++++..-+.-|+++|-.|-.++.+.+++
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~ 361 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKE 361 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455556666666666667777777777777777777776666666554
No 173
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.26 E-value=1.9e+02 Score=34.81 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
..|+.+-+..+ .++..++|..|..|.++
T Consensus 501 ~~ii~~A~~~~---~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 501 ENIIEEAKKLI---GEDKEKLNELIASLEEL 528 (782)
T ss_pred HHHHHHHHHHH---hhhhhHHHHHHHHHHHH
Confidence 45555555443 45666777776666554
No 174
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.71 E-value=21 Score=33.63 Aligned_cols=45 Identities=29% Similarity=0.251 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772 478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW 522 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa 522 (746)
=..||..|-.+-.+|+..-+.|.+...||++|.-|-..||..|.+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777778888888888889999999999999999999999985
No 175
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.58 E-value=76 Score=29.94 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=61.6
Q ss_pred cceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 411 PIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRS 490 (746)
Q Consensus 411 p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRa 490 (746)
|++-+.+.+..--..+-..++++++.+...+.|..-+.+++++-.. ...+|.-++++..+=..+|+.+...+.
T Consensus 94 ~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~-------~~~~~~ki~~l~~~i~~~e~~~~~~~~ 166 (218)
T cd07596 94 PLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAA-------PGIKPAKVEELEEELEEAESALEEARK 166 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555444444444444443221 224677888888888888888888888
Q ss_pred HHHhhhHHHHHHHHHHhhhHHH-HHHHHHHHHH
Q psy2772 491 ILAHNSKKLEETVAANARLESE-LVVLRQKLQW 522 (746)
Q Consensus 491 eLSrnSkELE~twaEyaRLE~E-V~~LRqkLQa 522 (746)
.....+..|. .|+.|++.+ +.-+|..|+.
T Consensus 167 ~~~~i~~~~~---~El~~f~~~~~~dlk~~l~~ 196 (218)
T cd07596 167 RYEEISERLK---EELKRFHEERARDLKAALKE 196 (218)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 8888876554 566666653 4456666653
No 176
>PRK00106 hypothetical protein; Provisional
Probab=64.52 E-value=1.8e+02 Score=33.97 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q psy2772 486 SRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREV 527 (746)
Q Consensus 486 srVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~ 527 (746)
..-...|.+--++|+.-..++.+++.++..+++.....++..
T Consensus 121 ekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 121 SSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555666666666666666666556543
No 177
>KOG0612|consensus
Probab=64.47 E-value=96 Score=39.44 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhhhccCCCCCCC-------CcchHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL---ESELVVLRQKLQWSRREVCNGTASLSN-------GPSVAA 542 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL---E~EV~~LRqkLQaQr~~~~~~~~~~~~-------~qekAq 542 (746)
..+.+.+.|++++.... .+||.+-..++.+ ...|..||..|.++..-... .+.+. .--.-+
T Consensus 505 ~~~~~~~~l~~~~~~~~-------eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~--e~~~~~kl~~~~~e~~~~ 575 (1317)
T KOG0612|consen 505 EEEAKKRKLEALVRQLE-------EELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRA--ESEDAGKLRKHSKELSKQ 575 (1317)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhh--hHHHHhhHhhhhhhhhHH
Confidence 33344444444444444 3444444444444 55566777777765532110 00000 011223
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2772 543 LEAELR---RVQALVGDLQRQRQELSAQVKQLTEKS 575 (746)
Q Consensus 543 LekELw---RIQdVvggLsrQRqeLs~qVrqLt~~s 575 (746)
|+.|+. -.++-+..|+.-...|+.--++|+...
T Consensus 576 iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~ 611 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSLLEESKSKLSKENKKLRSEL 611 (1317)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 666777777777666666555555433
No 178
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.32 E-value=20 Score=29.45 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHH
Q psy2772 423 ISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQ 478 (746)
Q Consensus 423 lSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQ 478 (746)
+++.....+-+.+++..+..|+++.++|+ .+++..+.+|.++|+++.-+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~-------~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELK-------EEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHH
Confidence 34444455555556666666666655554 55666656999999998743
No 179
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=64.15 E-value=1.6e+02 Score=30.89 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=49.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
+..|+-|.+.+..+...+...+.++.-+..+..+.. ...+.+..|++.+| ..+.+...+||..-...
T Consensus 193 lq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~------~~~~~le~~~~~~e-------e~~~~L~ekme~e~~~~ 259 (297)
T PF02841_consen 193 LQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQK------EQEQMLEQQERSYE-------EHIKQLKEKMEEEREQL 259 (297)
T ss_dssp HHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 456777777777777666666666665555554322 12223333333333 33344445666655532
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy2772 507 ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQ 551 (746)
Q Consensus 507 aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQ 551 (746)
.. |++- .|.++|++|......+ .......|++|++..|
T Consensus 260 ~~-e~e~-~l~~k~~eq~~~l~e~-----~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 260 LQ-EQER-LLEQKLQEQEELLKEG-----FQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HH-HHHH-HHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHH
T ss_pred HH-HHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcC
Confidence 22 1111 2345555544321221 2245556677766543
No 180
>KOG0996|consensus
Probab=64.08 E-value=1.1e+02 Score=38.72 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=7.0
Q ss_pred cceecccCCCCc
Q psy2772 274 ISRVLYPNDNNF 285 (746)
Q Consensus 274 ITrVLYPDDSt~ 285 (746)
|++.-|-|.|..
T Consensus 187 ItRtA~~~NsSk 198 (1293)
T KOG0996|consen 187 ITRTAFRDNSSK 198 (1293)
T ss_pred EEehhhhCCCce
Confidence 666666665543
No 181
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.05 E-value=1.3e+02 Score=31.12 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
|..++--.|+=-+-|...+..|..+..+|......|+-|+.
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLC 140 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence 44444444454555556666666666666666666666654
No 182
>KOG0994|consensus
Probab=63.80 E-value=69 Score=40.73 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQK 519 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqk 519 (746)
++-+..-+++-|+.|..|+.+++.+-+.+-+|-...+.||.-|+.||.+
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHK 1634 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444777888888888888888888888888888888888887754
No 183
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=63.71 E-value=1.4e+02 Score=28.73 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
-+.|+.++...-.+|....+++..+=.+.++++..|..++.+|.
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433344444444443333333
No 184
>KOG2129|consensus
Probab=63.55 E-value=1.3e+02 Score=34.68 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhHHHHH--------HHHHHhhhHHHHHHHHHHH
Q psy2772 485 LSRVRSILAHNSKKLEE--------TVAANARLESELVVLRQKL 520 (746)
Q Consensus 485 LsrVRaeLSrnSkELE~--------twaEyaRLE~EV~~LRqkL 520 (746)
|-..|.+.-+.-+.||+ .|...++||+|-..|--||
T Consensus 181 leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556555555444443 4778888888876666666
No 185
>KOG0964|consensus
Probab=63.48 E-value=76 Score=39.64 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH---HHHhhhccCCCCCCCCcchHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ---WSRREVCNGTASLSNGPSVAALEAEL 547 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ---aQr~~~~~~~~~~~~~qekAqLekEL 547 (746)
+.+++.|-.-||+.|--+|.+|-.-.+|.++..++.-++|.+....++.-. ..+++ ..+++.++++.+
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~---------~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNT---------IKGEKSRVQESL 743 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHh
Confidence 345556666777777777777777777777777777777766555444322 22211 335778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 548 RRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 548 wRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
-.++..++++-..|+.+..+.+.+-
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888888888888888777776554
No 186
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.30 E-value=53 Score=31.50 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 500 EETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 500 E~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
++.-.....|+.|+..|..+|+.=+
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777777544
No 187
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=62.87 E-value=1.2e+02 Score=27.48 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 445 ~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
.-+..++.+....+.=++... .....|...-..|+..-..++..+..-.+.|+.+..-...++.-.. +.+-|....
T Consensus 51 ~~~~~~~~l~~~~~~L~~~~~---~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e 126 (213)
T cd00176 51 AHEERVEALNELGEQLIEEGH---PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKE 126 (213)
T ss_pred HCHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344555555544443344433 5678888888899999999999999999999998877666654333 444444333
Q ss_pred hhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy2772 525 REVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 525 ~~~~~~~~~~~~~qekAqLekELwRIQdVvggLs 558 (746)
...... ........+++-+...+.+...+.
T Consensus 127 ~~l~~~----~~~~~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 127 AALASE----DLGKDLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHhcCc----ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 221111 111133445555555555555554
No 188
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=62.63 E-value=26 Score=31.03 Aligned_cols=49 Identities=22% Similarity=0.132 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYR 475 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~ 475 (746)
.+.+.+-+++...|+.++.+-+.||.++.....-..+|+-.+.++..=+
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr 83 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRR 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHH
Confidence 3556778899999999999999999999988777777665555544433
No 189
>PRK11519 tyrosine kinase; Provisional
Probab=62.45 E-value=67 Score=37.56 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=37.1
Q ss_pred ccCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 463 GVHA-SPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 463 ~~~d-qPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkL 520 (746)
.|.+ +|.. ..+..|+..|++++...+.+++... +.=.+|.+||+|+...+...
T Consensus 333 ~y~~~hP~v-~~l~~~~~~L~~~~~~l~~~~~~lp----~~e~~~~~L~Re~~~~~~lY 386 (719)
T PRK11519 333 LYTKEHPAY-RTLLEKRKALEDEKAKLNGRVTAMP----KTQQEIVRLTRDVESGQQVY 386 (719)
T ss_pred HhcccCcHH-HHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHH
Confidence 3554 4554 4567778888988888887777644 33468899999988766543
No 190
>KOG4286|consensus
Probab=62.40 E-value=57 Score=39.70 Aligned_cols=51 Identities=29% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCcC-CcccCCCCcccccccccccccccccCCCC-CCCCCCCCCCCC
Q psy2772 638 DDTEDSSDGAGPVG-AKRKTSHGWLETDLDMNSTLDVAIESPCI-SYPSSPQHMTSS 692 (746)
Q Consensus 638 ~~~~~~~~~~g~~~-~k~~~~~~w~etdld~~~~~d~~~~~~~~-~~~~~~~~~~~~ 692 (746)
.+++|+++|+|-.+ ++++++-+ ++.+. ..+-++.++-|. .-|+++|++++|
T Consensus 914 G~~~d~s~~a~dll~~p~d~SV~-l~~~M---e~l~~afeSv~~S~V~s~~qq~~ds 966 (966)
T KOG4286|consen 914 GSQTDDSMGEEDLLSPPQDTSVG-LEEVM---EQLNNSFPSVRGSNVPSEPQQEDDS 966 (966)
T ss_pred CCCCCcccccccccCCCcccccc-hHHHH---HHHHhhcchhccCCCCCchhhhccC
Confidence 46788888866555 45666666 66544 566677777776 678889988865
No 191
>KOG1899|consensus
Probab=62.28 E-value=3.6e+02 Score=32.84 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=26.2
Q ss_pred CceeeecCcccccccccccCccccccccccccCC
Q psy2772 712 GTDVKLNGKTGRFGNTETNGTSAEIGRAEATSSG 745 (746)
Q Consensus 712 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (746)
++..+-||..|.|-|...|+..+-.+.+.++.++
T Consensus 411 l~e~kr~~~~g~~~~~~sn~~~a~ap~~~~~~sa 444 (861)
T KOG1899|consen 411 LDELKRNGNEGANHNYSSNSLPAGAPKASSTLSA 444 (861)
T ss_pred hhhccccCCcccccccCcCcCcccCCCcccccCC
Confidence 6777888888888888888887777777666554
No 192
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.02 E-value=1.8e+02 Score=29.31 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
....|+.++-..+..+..|..+-.+|...+..+..+-+.|.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666666666665555443
No 193
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=61.98 E-value=1.3e+02 Score=32.67 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=51.0
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHhhhccCCCCCCCCcchHHHH-------HHHHHHHHH
Q psy2772 488 VRSILAHNSKKLEETVAANARLES-------ELVVLRQKLQWSRREVCNGTASLSNGPSVAALE-------AELRRVQAL 553 (746)
Q Consensus 488 VRaeLSrnSkELE~twaEyaRLE~-------EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLe-------kELwRIQdV 553 (746)
+|-.|+.+=-|.-+|.-.||-|.+ +|..||++|.+.-+ +-++++ +||.|....
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE-------------~~~~~~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEE-------------TLAQLQREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 377778777788888888887776 58889999876654 233444 456677777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy2772 554 VGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 554 vggLsrQRqeLs~qVrqLt 572 (746)
...|+.++.+|..++++.-
T Consensus 149 ~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 149 HDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776653
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.92 E-value=1.7e+02 Score=28.94 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHH
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVL 516 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~L 516 (746)
.-+.+.-+-++++|..++..++++...-...=.++..++.++..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555443333334444444444333
No 195
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.53 E-value=1.5e+02 Score=34.28 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhcccccccc
Q psy2772 560 QRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 560 QRqeLs~qVrqLt~~s~~l~~qi 582 (746)
+++.|..-+.=|.++-+...+++
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445555554555444444443
No 196
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.52 E-value=1.9e+02 Score=29.62 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----HHhhhHHHHHHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVA-----ANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa-----EyaRLE~EV~~LRqkLQaQr 524 (746)
++.....=..|+..+..++..|-....+++..-. ....|.+.+...+..|++=+
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444444433 34455555555555555443
No 197
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.41 E-value=42 Score=38.54 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 494 HNSKKLEETVAANARLESELVVLRQK 519 (746)
Q Consensus 494 rnSkELE~twaEyaRLE~EV~~LRqk 519 (746)
++-++|+..-.+|.+|-.|-+.||+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555666666555555543
No 198
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.16 E-value=1e+02 Score=32.22 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2772 478 QRLLERELSRVRSILAH 494 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSr 494 (746)
+.-+.++|-.|++.|..
T Consensus 48 r~~h~eeLrqI~~DIn~ 64 (230)
T PF10146_consen 48 RMAHVEELRQINQDINT 64 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555554444
No 199
>KOG1029|consensus
Probab=61.16 E-value=2.1e+02 Score=35.53 Aligned_cols=144 Identities=22% Similarity=0.225 Sum_probs=76.5
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN----SKKLEETV 503 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn----SkELE~tw 503 (746)
|++|=-|.+++.-|.=++++++.|+.=. .+-+-+--|+=+++|.-||++|-+-|-.=.+- -|++|+-=
T Consensus 328 ELerRRq~leeqqqreree~eqkEreE~--------ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rE 399 (1118)
T KOG1029|consen 328 ELERRRQALEEQQQREREEVEQKEREEE--------EKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERRE 399 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566556666666666667777776533 33344555667788888888887776433321 13333322
Q ss_pred HHHhhhHH--HHHH---HHHHHHHHHhhhccCCCCCCC---CcchHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy2772 504 AANARLES--ELVV---LRQKLQWSRREVCNGTASLSN---GPSVAALEAELR-----------RVQALVGDLQRQRQEL 564 (746)
Q Consensus 504 aEyaRLE~--EV~~---LRqkLQaQr~~~~~~~~~~~~---~qekAqLekELw-----------RIQdVvggLsrQRqeL 564 (746)
+.-..||. .|+. -|+.|+.|++.-.- .. -.-+.+|+-||. |||||-.++..||+++
T Consensus 400 aar~ElEkqRqlewErar~qem~~Qk~reqe-----~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~i 474 (1118)
T KOG1029|consen 400 AAREELEKQRQLEWERARRQEMLNQKNREQE-----WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEI 474 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHH
Confidence 22222221 1111 12344444432100 00 023456666664 6778888888899988
Q ss_pred HHHHHH---HhhhcccccccccC
Q psy2772 565 SAQVKQ---LTEKSNSLSQQIRP 584 (746)
Q Consensus 565 s~qVrq---Lt~~s~~l~~qi~~ 584 (746)
..--.| ....-+.|+++|.-
T Consensus 475 e~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 475 EEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Confidence 653322 22344667888874
No 200
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.15 E-value=1.2e+02 Score=28.43 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALE 544 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLe 544 (746)
|..++....+-..||.++..+..+.+.. -.+.+.+-.|...|+.+-.+-|..=--=.. .+-.-.+..++
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~--------qd~~e~~~~l~ 77 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVK--------VDKTKVEKELK 77 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhh--------ccHHHHHHHHH
Confidence 4444444444555555555444444433 356677888888888776665532000000 00112334467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q psy2772 545 AELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPG 585 (746)
Q Consensus 545 kELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~ 585 (746)
+.+..|+.-+..|.++...|..++..+.++-..+.++..|+
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777888888888888888888888888777777665554
No 201
>PRK10780 periplasmic chaperone; Provisional
Probab=61.07 E-value=1.2e+02 Score=29.30 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=49.2
Q ss_pred ceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC
Q psy2772 412 IRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS 467 (746)
Q Consensus 412 ~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq 467 (746)
-||+.-|++.-+.-+-+..++..+++......+.+.+.++..|....++++.....
T Consensus 24 ~KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ 79 (165)
T PRK10780 24 DKIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGST 79 (165)
T ss_pred cCeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 48999999988899999999999999999999999999999999888888776433
No 202
>PF13514 AAA_27: AAA domain
Probab=61.05 E-value=2e+02 Score=35.41 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=28.3
Q ss_pred cchHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccccccccC
Q psy2772 28 PSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPG 75 (746)
Q Consensus 28 ~~~a~LeseL~Rvq~lVGD~QrQR~eLs~~VrQLTe~s~~l~qqi~~~ 75 (746)
.....|...+..++....|+.+-+.++.....++.+ +.++|+|+
T Consensus 286 ~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~----~~~~lg~~ 329 (1111)
T PF13514_consen 286 AEIEALEEQRGEYRKARQDLPRLEAELAELEAELRA----LLAQLGPD 329 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCC
Confidence 344567777777777777777777777666655544 45566644
No 203
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=60.71 E-value=2.1e+02 Score=29.77 Aligned_cols=81 Identities=23% Similarity=0.197 Sum_probs=49.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 487 RVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSA 566 (746)
Q Consensus 487 rVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~ 566 (746)
....++++...++...=+++..+|.++..+++.++.+....+ ++.-...++.....+..+.+.+.-+..++.++.+...
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~-~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 210 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTG-GTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIA 210 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566677777777777788888899999999999987764321 1122223344444555555555555555555444444
Q ss_pred HH
Q psy2772 567 QV 568 (746)
Q Consensus 567 qV 568 (746)
++
T Consensus 211 ~l 212 (301)
T PF14362_consen 211 AL 212 (301)
T ss_pred HH
Confidence 43
No 204
>KOG0999|consensus
Probab=60.60 E-value=1.2e+02 Score=36.21 Aligned_cols=76 Identities=25% Similarity=0.224 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 443 QGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 443 Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkL 520 (746)
|++.-+.||.-++.+|++|++-.. +-.+--..+++.-.-++.+--..|-.-+.+=+.-......||+||-++|+-|
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtke--al~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKE--ALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666654321 1111122233333334444444444444443444444444444444444444
No 205
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=60.55 E-value=1.2e+02 Score=32.51 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCC-CCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 481 LERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLS-NGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 481 LE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~-~~qekAqLekELwRIQdVvggLsr 559 (746)
|++-+..+..+++...+.|++.-++-+.||..+..-|+.|.-....-.+-+.-.+ .--+--.||.||...=+.--.-=|
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555554444444421111000000000 113555677777776655444445
Q ss_pred HHHHHHHHHHHH
Q psy2772 560 QRQELSAQVKQL 571 (746)
Q Consensus 560 QRqeLs~qVrqL 571 (746)
+..=|..|.+..
T Consensus 247 Nl~yLe~qle~~ 258 (267)
T PF10234_consen 247 NLDYLEHQLEEY 258 (267)
T ss_pred hHHHHHHHHHHH
Confidence 555555554443
No 206
>PF13166 AAA_13: AAA domain
Probab=60.38 E-value=1.6e+02 Score=33.55 Aligned_cols=13 Identities=38% Similarity=0.394 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q psy2772 509 LESELVVLRQKLQ 521 (746)
Q Consensus 509 LE~EV~~LRqkLQ 521 (746)
++.+...++..++
T Consensus 389 ~~~~~~~~~~~~~ 401 (712)
T PF13166_consen 389 LKKEQNELKDKLW 401 (712)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 207
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.34 E-value=68 Score=32.11 Aligned_cols=20 Identities=0% Similarity=-0.207 Sum_probs=14.1
Q ss_pred ccchhhhhhhhccccCcccc
Q psy2772 353 FLGYPKSDNIILPRKQHLFL 372 (746)
Q Consensus 353 sLaIPELmRIL~de~gl~wd 372 (746)
.|.+-|++-.|+|+--+..+
T Consensus 29 ~~~VKdvlq~LvDDglV~~E 48 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVE 48 (188)
T ss_pred hhhHHHHHHHHhccccchhh
Confidence 58889999999985333333
No 208
>KOG0993|consensus
Probab=59.36 E-value=1.1e+02 Score=35.11 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHG 463 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~ 463 (746)
.+.+.+|-...+++++-+++|+-+..|++-+..
T Consensus 100 q~~~~leqertq~qq~~e~~erEv~~l~~llsr 132 (542)
T KOG0993|consen 100 QMCQNLEQERTQLQQNEEKLEREVKALMELLSR 132 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356678888888999988888888888877665
No 209
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=59.21 E-value=1.9e+02 Score=34.38 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=95.5
Q ss_pred ccccccccccc-cccccccCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhH--HHHHHHHHHHhHhhhccC
Q psy2772 389 GPLACGPWKVH-AELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAK--EMLENALGSLRHKMHGVH 465 (746)
Q Consensus 389 LpEALEkWpv~-~~l~irvrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DK--D~LEsAL~~L~qqME~~~ 465 (746)
+|++|-+|-.+ |.+|-.-.| -+.-|-|+|.-. ...--.-.|+.-+-++ .++..=|.. ....
T Consensus 2 ~a~el~~Wa~eEmg~p~~~~P----------~~~~lrrlC~G~-~~~IWkfli~~V~s~rtV~~iRgNl~~-----~~~~ 65 (632)
T PF14817_consen 2 LAEELKRWAQEEMGYPPASLP----------SDDYLRRLCRGN-MAPIWKFLIQHVRSQRTVRKIRGNLLW-----YGHQ 65 (632)
T ss_pred chHHHHHHHHHHhCCCCCCCC----------CHHHHHHHhccC-ChHHHHHHHHHcCcHhHHHHHHcceee-----cccc
Confidence 57788888776 666644333 245677888652 3333344444444332 122221211 1111
Q ss_pred CCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHH
Q psy2772 466 ASP---AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAA 542 (746)
Q Consensus 466 dqP---a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAq 542 (746)
+++ ..-|....-++.|+.++.+.|++|.+.=++++.+=.|.++-|.+..+..+++...+. ..+.
T Consensus 66 ~~~~~~~~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~-------------k~~L 132 (632)
T PF14817_consen 66 QSKERKKSRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH-------------KQLL 132 (632)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 222 133334445789999999999999999999999999999999999998888876552 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKS 575 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~~s 575 (746)
|++==.+.+.--..|+.--+-|..+|.+|.+-.
T Consensus 133 L~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~ 165 (632)
T PF14817_consen 133 LEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQ 165 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555566666666543
No 210
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.94 E-value=58 Score=38.64 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=18.4
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMH 462 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME 462 (746)
.|-+..+++++..|+++-..|+.-|+.++..++
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie 453 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIE 453 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666555555555554443
No 211
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.62 E-value=35 Score=31.78 Aligned_cols=48 Identities=31% Similarity=0.354 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
+=..||..|-..-.+|+..-+.|.....||++|.-|-..||..|...-
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888888889999999999999999999999998654
No 212
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.45 E-value=2.3e+02 Score=34.08 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
+.+.+..++.-+..+.+.+.++.....++++.-..+..+++-
T Consensus 401 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555556666666666666666555544
No 213
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=58.26 E-value=1.2e+02 Score=31.59 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=66.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAANARLE 510 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaEyaRLE 510 (746)
|-+...|..|++++.+|-.=.+++..++++-.+.++ .+..|-+.-+.-+.+.-+.++.++ .+|..++.||..+=
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~---~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~t 174 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKA---TLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSIT 174 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888877765433 333444456666777778888876 56666778998888
Q ss_pred HHHHHHHHHHHHHHh
Q psy2772 511 SELVVLRQKLQWSRR 525 (746)
Q Consensus 511 ~EV~~LRqkLQaQr~ 525 (746)
++|-.=+..|.+|+.
T Consensus 175 eeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 175 EELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888874
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=58.22 E-value=86 Score=35.20 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhh-----hccCCChHHHHHHHHHHHHHHHH---HHHHHHHHHhh---hHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKM-----HGVHASPAEVERYRRQQRLLERE---LSRVRSILAHN---SKKLEE 501 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqM-----E~~~dqPa~~EKi~~QQrlLE~e---LsrVRaeLSrn---SkELE~ 501 (746)
.+.+|+.+.++++++-.||--|+.+.|+. |.-.=|-...|.++|||.|.++- ++--|.+|-.- --|||.
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEs 208 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLES 208 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772 502 TVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555 (746)
Q Consensus 502 twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg 555 (746)
-|.+.--==+-|.||-...++.+ -+++...+.-...+|-.||..|--.|+
T Consensus 209 KVqDLm~EirnLLQle~~~~e~~----p~~~~~~s~~v~~ql~selkkivf~~e 258 (401)
T PF06785_consen 209 KVQDLMYEIRNLLQLESDMKESM----PSTPSPSSQDVPKQLVSELKKIVFKVE 258 (401)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcC----CCCCcchhhhhHHHHHHHHHHHHHHHh
No 215
>KOG0933|consensus
Probab=57.99 E-value=1.2e+02 Score=38.12 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=73.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772 421 HAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE 500 (746)
Q Consensus 421 ~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE 500 (746)
.+.-|..+..+.+..-+...+.|+-+-|.|++.+..+.++|++ ...|++.|+.++...++.+..+-.+.+
T Consensus 798 ~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~----------~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 798 TAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQ----------LEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 3444444555555555555555555555555555555555544 334577777777777766666544444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASL-SNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 501 ~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~-~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
.+- .+|...+.++-.+=-..+....+. -+.+++..++-|+...+.=+.-|++.....+..|+.|..+..-+.
T Consensus 868 ~~~-------~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 868 KAQ-------AELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHH-------HHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 332 333333333322210000000000 012455555666666666666677777777777887777766554
No 216
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=57.94 E-value=3e+02 Score=30.47 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=61.4
Q ss_pred hhhhhhhhhhhh----hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHH-HHHHHHHHH--------------
Q psy2772 423 ISRDQIASKLHS----RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERY-RRQQRLLER-------------- 483 (746)
Q Consensus 423 lSr~ce~dKilq----elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi-~~QQrlLE~-------------- 483 (746)
++..+.+=.+|. .|.-+|..=|+.|+.||.=+++.|.++-..-.+....++- +.....+|+
T Consensus 58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~ 137 (305)
T PF14915_consen 58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNS 137 (305)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 444555555554 2344555667888888888888777754433222222222 111222222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 484 ELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
|++.++..---.|..|-+|=.....||.++..+|.+|.+-
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEK 177 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREK 177 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444334457889999999999999999999999854
No 217
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.69 E-value=2.2e+02 Score=28.79 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy2772 549 RVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 549 RIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi 582 (746)
..+..+..|+.+...+..+|.+|..+-..|..+|
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444
No 218
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=57.68 E-value=1.6e+02 Score=30.46 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=84.3
Q ss_pred ccCCCCcceeeecchhhhhhhhhhhh-hhh-----hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH---HHHHH
Q psy2772 405 RVRPVSPIRIRIGVMIHAISRDQIAS-KLH-----SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE---VERYR 475 (746)
Q Consensus 405 rvrp~~p~ri~e~d~d~klSr~ce~d-Kil-----qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~---~EKi~ 475 (746)
+.+|-+|+|-.-.++-..+..++... +.. .+.|.....|-+..-++-.+++.+|+.+...+. +.+ ..+.+
T Consensus 94 ~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~~~r~-~~~~~~~~~~~ 172 (284)
T PF12805_consen 94 PLRPYRPVRQALAECYRALADYLRAKARFFDPDQHDDDEQLRIELAQQQIKVNEALEQARELLLRRRR-SGRGKPSTYGR 172 (284)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCCCCcHHH
Confidence 67899999999999999999998872 222 344554444555555566666666666544422 111 11112
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHH
Q psy2772 476 RQQRLLERELSRVRSILAHNS---KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQA 552 (746)
Q Consensus 476 ~QQrlLE~eLsrVRaeLSrnS---kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQd 552 (746)
.+-..+ -+++.++-.+.-.- .+|-+... +..+......+=.++-+..++-+..--.....+....++.++..+++
T Consensus 173 ~ll~~~-~~a~Dl~E~~~as~~~y~~l~~~f~-~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~ 250 (284)
T PF12805_consen 173 RLLLLF-FEAVDLFERALASHYDYEELREQFK-HSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEE 250 (284)
T ss_pred HHHHHH-HHHHHHHHHHHhccccHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHH
Confidence 222211 12222222222111 23333222 22222222222222222222111000000123456668888888888
Q ss_pred HHHHHHHH----HHHHHHHHHHHhhhccccccc
Q psy2772 553 LVGDLQRQ----RQELSAQVKQLTEKSNSLSQQ 581 (746)
Q Consensus 553 VvggLsrQ----RqeLs~qVrqLt~~s~~l~~q 581 (746)
-+..+..+ ..+.-..+++|-++-.++.+|
T Consensus 251 ~l~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~q 283 (284)
T PF12805_consen 251 SLEFLRQQDQPENREALLALRNLLDNLRNIDRQ 283 (284)
T ss_pred HHHHHHHhcCccCHHHHHHHHHHHHHHHHHHhh
Confidence 88887775 234445566666655554443
No 219
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=57.62 E-value=2.1e+02 Score=30.50 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=68.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhH----------------hhhccCCChHHHHHHHHHHHHHHHHHHHH
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRH----------------KMHGVHASPAEVERYRRQQRLLERELSRV 488 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~q----------------qME~~~dqPa~~EKi~~QQrlLE~eLsrV 488 (746)
+..+-++-+.+++++|..|+.++.....+|.-... ++.....+|...++|...+..++.+|.-+
T Consensus 158 kNi~N~~~i~~Lee~I~rLk~E~~~W~~~l~~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~le~~ 237 (301)
T PF08202_consen 158 KNIENEENIAELEEKIKRLKEERQAWAQLLKPYQDPDKEWSKIESSRDSEAKIDSVLEDPETYSKILQRLSQVQSDLEFK 237 (301)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhccCcccccccccccccccccccccccChhHHHHHHHHhhhHHHHHHHH
Confidence 45566778889999999999999999999943333 23333444544466666677788888888
Q ss_pred HHHHHhhhHHHHHHHHHHhhhHHHHH
Q psy2772 489 RSILAHNSKKLEETVAANARLESELV 514 (746)
Q Consensus 489 RaeLSrnSkELE~twaEyaRLE~EV~ 514 (746)
=-+|+..+..|+..+....++...+.
T Consensus 238 iD~L~~~vH~L~~~~~~~~~~~~~~l 263 (301)
T PF08202_consen 238 IDELADSVHKLEQRSEAAGEEADQKL 263 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888888887777
No 220
>PRK10869 recombination and repair protein; Provisional
Probab=57.44 E-value=1.3e+02 Score=34.50 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=33.3
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHH
Q psy2772 417 GVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYR 475 (746)
Q Consensus 417 ~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~ 475 (746)
+.+..+|+..+..|.-+ ++....|..-...||.+...+++.++....+|...+.+.
T Consensus 247 ~~~~~~l~~~~~~d~~~---~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie 302 (553)
T PRK10869 247 YSAKQLLSELIGMDSKL---SGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELE 302 (553)
T ss_pred HHHHHHHHHHhhhCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 34455555555555433 344444555555667777777777776677777766654
No 221
>PRK10698 phage shock protein PspA; Provisional
Probab=57.31 E-value=2.3e+02 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 540 VAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 540 kAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
.+.|+.++-..+..+..|..+-..|...+..+..+-+.|.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444443
No 222
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=57.26 E-value=58 Score=28.51 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=60.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccC-CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHhhh
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVH-ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE-----ETVAANARL 509 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~-dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE-----~twaEyaRL 509 (746)
.+..+..|+++.+.++..+..+.++-+--. .++..++.+..+...|=.+|..+.....+...++- .++.++..
T Consensus 3 ~~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~- 81 (143)
T PF05130_consen 3 IEELIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE- 81 (143)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh-
Confidence 345566666777777776666666633222 24666666655555554444444433333322221 11111111
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCc
Q psy2772 510 ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPT 587 (746)
Q Consensus 510 E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~~~ 587 (746)
....+..=...++.++..++..-.....-+++.-+..+.+...+.+...
T Consensus 82 -----------------------------~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l~~l~~~~~ 130 (143)
T PF05130_consen 82 -----------------------------EREELQALWRELRELLEELQELNERNQQLLEQALEFVQQLLNLLQPARK 130 (143)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH---
T ss_pred -----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2233433344566666666666666666666555555555555555443
No 223
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.25 E-value=2.4e+02 Score=29.11 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=40.2
Q ss_pred eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSIL 492 (746)
Q Consensus 413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeL 492 (746)
++..||+..+|........-+...+..+.+++...+.++.-+.... ...+.+..+...++.+|....+.+
T Consensus 37 ~V~~G~~L~~ld~~~~~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 106 (327)
T TIGR02971 37 RVQAGQVLAELDSRPERTAELDVARTQLDEAKARLAQVRAGAKKGE----------IAAQRAARAAAKLFKDVAAQQATL 106 (327)
T ss_pred EecCCcEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH----------HHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3456777777765433222233334444444433333322111100 112223334445555666666666
Q ss_pred HhhhHHHHHHHHHHhhhH
Q psy2772 493 AHNSKKLEETVAANARLE 510 (746)
Q Consensus 493 SrnSkELE~twaEyaRLE 510 (746)
...-..++.+=.+|.|.+
T Consensus 107 ~~~~~~l~~a~~~~~R~~ 124 (327)
T TIGR02971 107 NRLEAELETAQREVDRYR 124 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555655555555554
No 224
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.02 E-value=2.4e+02 Score=29.00 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 475 RRQQRLLERELSRVRSILAHNSKKL-----------EETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 475 ~~QQrlLE~eLsrVRaeLSrnSkEL-----------E~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
..|+..-+.||......|+++=+.+ +..|...+..+..|.-||..|++-..
T Consensus 145 ~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 145 TPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888887776 55555566666777777777775543
No 225
>PTZ00464 SNF-7-like protein; Provisional
Probab=56.81 E-value=2.4e+02 Score=29.10 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=45.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHA-----SPAEVERYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~d-----qPa~~EKi~~QQrlLE~eLsrVRaeLSr 494 (746)
..++.++..|..-..+|+.=|...+.+|...+. ....+=.+.++.+.+|..|.++...+..
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~n 86 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFN 86 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888899988889888876653 2334445778999999988877666543
No 226
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.45 E-value=3.7 Score=47.43 Aligned_cols=144 Identities=22% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVH---ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~---dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE 510 (746)
.+++..+..|.++|+.|-.-+..+..+..+.. ..|.. -...+...|+..|-+.|.++-+....++..=.+...+|
T Consensus 196 ~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le 273 (713)
T PF05622_consen 196 HELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQ--HLSVELADLRAQLRRLREELERLEEQRDDLKIELEELE 273 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888777766666655433 22221 11122222333344444443333333333333445666
Q ss_pred HHHHHHHHHHHHHHhhhccCCC---CCCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 511 SELVVLRQKLQWSRREVCNGTA---SLSN----GPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 511 ~EV~~LRqkLQaQr~~~~~~~~---~~~~----~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
.+|.-||+..++=.....-... -+|. .-....++.++-+-..-+.++. .|..+|+.|.+.+..|.+++.
T Consensus 274 ~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~----~lk~qvk~Lee~N~~l~e~~~ 349 (713)
T PF05622_consen 274 KEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLE----DLKRQVKELEEDNAVLLETKA 349 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665433211110000 0111 1122334555555544444443 344566666666665555443
No 227
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=55.91 E-value=44 Score=32.48 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
-+...+++.|+.|+..++.|++..|. -..-|.|+||++.+..|...|++..+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~--qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISA--QDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-T--TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999998863 23577788888888888888775543
No 228
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=55.58 E-value=46 Score=36.65 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=28.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhcc
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGV 464 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~ 464 (746)
-+..+-+++++..++.++.+.++|++.|..+...-...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~ 367 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQG 367 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 34456668888889999999999999888887754333
No 229
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=55.57 E-value=3.7e+02 Score=30.95 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=76.3
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh--------------hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHK--------------MHGVHASPAEVERYRRQQRLLERELSRVRSILA 493 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq--------------ME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLS 493 (746)
++.+++..++..+..|++.-+.+=.-+..++.. |..-+=.-.| -.+..+-..+++.|......|+
T Consensus 191 ~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~-~~i~~~i~~i~~~l~~~~~~L~ 269 (560)
T PF06160_consen 191 EAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEH-LDIEEEIEQIEEQLEEALALLK 269 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888877776665555554432 2221111111 1233333444444444444443
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCC--------CCcchHHHHHHHHHHHHHH----HHHHHHH
Q psy2772 494 HNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLS--------NGPSVAALEAELRRVQALV----GDLQRQR 561 (746)
Q Consensus 494 rnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~--------~~qekAqLekELwRIQdVv----ggLsrQR 561 (746)
.. +|+++-..+..++.++..|-+.|+.............+ .-....+|..|+-||+.-- +.+...
T Consensus 270 ~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~- 346 (560)
T PF06160_consen 270 NL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV- 346 (560)
T ss_pred cC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-
Confidence 33 45555555666666666665555544432110000000 0134556777777776521 123333
Q ss_pred HHHHHHHHHHhhhcccccccccCC
Q psy2772 562 QELSAQVKQLTEKSNSLSQQIRPG 585 (746)
Q Consensus 562 qeLs~qVrqLt~~s~~l~~qi~~~ 585 (746)
++|..++.+|..+-+.+.+.|..+
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~ 370 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQ 370 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455566666666666666555544
No 230
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=55.56 E-value=66 Score=36.72 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHH
Q psy2772 446 AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVV 515 (746)
Q Consensus 446 DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~ 515 (746)
.-|+|-.-|..++.+++.......++|.- +.---.||..+|.+=-.+-+++-.+-.+|++--+|+..
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~e---r~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar 141 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETE---REAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443322222111 11112244444444444444444444444444444433
No 231
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=55.14 E-value=1.5e+02 Score=35.88 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=40.4
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHhhhHH
Q psy2772 439 ICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSIL-------AHNSKKLEETVAANARLES 511 (746)
Q Consensus 439 kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeL-------SrnSkELE~twaEyaRLE~ 511 (746)
-.-.|+++.|...+-|+.+...|..+|+. .+++-+...+...-+|++...+| .+.-.++++.=.+. |...
T Consensus 11 E~e~L~~ele~~~~~l~~~~~~i~~fwsp--Elkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~ 87 (775)
T PF10174_consen 11 ENERLRRELERKQSKLGSSMNSIKTFWSP--ELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQR 87 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHhcccch--hhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhh
Confidence 33445555555555666666666666644 44555555544444444444444 44444444444444 4555
Q ss_pred HHHHHHHHHH
Q psy2772 512 ELVVLRQKLQ 521 (746)
Q Consensus 512 EV~~LRqkLQ 521 (746)
|+..|++.+.
T Consensus 88 e~~rL~~~~e 97 (775)
T PF10174_consen 88 ELNRLQQELE 97 (775)
T ss_pred HHHHHHHHhh
Confidence 5554544443
No 232
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=54.90 E-value=1.9e+02 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
++|...=.++..+..++..|+..+...
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555554444444433
No 233
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=54.78 E-value=1.1e+02 Score=27.13 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=48.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
|+++|..|..|+.+-=.|-==+--|..++. ..-|...+.+..+---|..++...+.+|..--+.|.++....
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~--~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQ--KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888888876665544444555555 334667777777766677777777777766666666665543
No 234
>KOG0977|consensus
Probab=54.57 E-value=3.2e+02 Score=32.27 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy2772 477 QQRLLERELSRVRSILAHN 495 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrn 495 (746)
=-+.||.|+.+++++.++.
T Consensus 163 r~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3445555555555544443
No 235
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=54.29 E-value=27 Score=31.28 Aligned_cols=54 Identities=35% Similarity=0.362 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhc-----cC--CCCC-----CCC-------cchHHHHHHHHHHHHHHHHHHHH
Q psy2772 507 ARLESELVVLRQKLQWSRREVC-----NG--TASL-----SNG-------PSVAALEAELRRVQALVGDLQRQ 560 (746)
Q Consensus 507 aRLE~EV~~LRqkLQaQr~~~~-----~~--~~~~-----~~~-------qekAqLekELwRIQdVvggLsrQ 560 (746)
..||+||..|+..||.+..-+. .+ ..+. ..+ .+-|.+|.|+-+.+.=|-.|.++
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887765431 00 0011 111 44566677777766666666554
No 236
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=53.70 E-value=1.6e+02 Score=33.61 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=72.3
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhccCC-----Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHh
Q psy2772 441 SVQGQAKEMLENALGSLRHKMHGVHA-----SP-AEVERYRRQQRLLERELSRVRSILAHNS-------KKLEETVAANA 507 (746)
Q Consensus 441 q~Lk~DKD~LEsAL~~L~qqME~~~d-----qP-a~~EKi~~QQrlLE~eLsrVRaeLSrnS-------kELE~twaEya 507 (746)
.-.+++-+.-|.-|...++.|..|+. +| +..+.+..+=-.||.+|...+++|+... -.+...-++.+
T Consensus 245 ~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~ 324 (434)
T PRK15178 245 LWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIK 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Confidence 34455556666666667777776663 24 4455566666789999999999888663 33444444444
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCCCCCCC---cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 508 RLESELVVLRQKLQWSRREVCNGTASLSNG---PSVAALEAEL--RRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 508 RLE~EV~~LRqkLQaQr~~~~~~~~~~~~~---qekAqLekEL--wRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
.||+.+..+|++|=.. .+.+++... -+...++.|+ ...+.-+..|..-|-|-..|.+.|.
T Consensus 325 aLe~QIa~er~kl~~~-----~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL~ 389 (434)
T PRK15178 325 VLEKQIGEQRNRLSNK-----LGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLL 389 (434)
T ss_pred HHHHHHHHHHHHhhcC-----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 4555555444444211 010111111 1334445554 2345567788888888888877775
No 237
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=53.69 E-value=2.7e+02 Score=30.64 Aligned_cols=147 Identities=19% Similarity=0.193 Sum_probs=81.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC--hHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS--PAEVERYRRQ---QRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq--Pa~~EKi~~Q---QrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
.++.-+.-++.-++=-+.++.+|......|..-.+. -+-..+|..= ..-||.+|..|..+|+...+.++..=...
T Consensus 209 ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai 288 (384)
T PF03148_consen 209 NIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAI 288 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555666666666655443321 2222222221 23577777777777776665555544444
Q ss_pred hhhHHHHH--HHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 507 ARLESELV--VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 507 aRLE~EV~--~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
.--+.-+. +.|-....+|-+.-+ -.| +.-..|-.|+..|+.-+..|+.+-.+.....+.|-..-..|...|.
T Consensus 289 ~~k~~~lkvaqTRL~~R~~RP~vEl---crD--~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 289 RDKEGPLKVAQTRLENRTQRPNVEL---CRD--PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHhhHHHHHHHHhhHhcCCchHH---HHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 333222222211000 011 3445688899999999999998888888888888776666665554
No 238
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=53.67 E-value=1.4e+02 Score=26.02 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=40.2
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR 508 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR 508 (746)
..+.|.+=+++|.+|.++=++|.+ |+..+.+-+-..|+.+..+-+.+...=...+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk------------------------~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSK------------------------KELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH------------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888877666654 34444444445555555555555555555555
Q ss_pred hHHHHHHHHHHH
Q psy2772 509 LESELVVLRQKL 520 (746)
Q Consensus 509 LE~EV~~LRqkL 520 (746)
+|.++..|++.|
T Consensus 59 ~e~~~~~l~~~l 70 (74)
T PF12329_consen 59 LEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 239
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.53 E-value=1.4e+02 Score=33.85 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhhhhhH---HHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHH
Q psy2772 432 LHSRGRNICSVQGQAK---EMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELS 486 (746)
Q Consensus 432 ilqelE~kLq~Lk~DK---D~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLs 486 (746)
+..+++..++.|--|- +.||.-|..+++-..+|+.++..+- .....++.+|.
T Consensus 285 ~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~---~~~~~l~~eL~ 339 (563)
T TIGR00634 285 ATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVL---EYAEKIKEELD 339 (563)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHH---HHHHHHHHHHH
Confidence 3333444444443333 5566667777777888887655443 33334444443
No 240
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=53.51 E-value=3.4e+02 Score=31.30 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
+..+|.++.-=|..++++=.+....|..|.++.+.+.
T Consensus 456 l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 456 LSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544555666666777777777777766654
No 241
>PF13166 AAA_13: AAA domain
Probab=53.33 E-value=3.7e+02 Score=30.79 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=5.0
Q ss_pred ccccccccccc
Q psy2772 386 RLGGPLACGPW 396 (746)
Q Consensus 386 HTILpEALEkW 396 (746)
+.+-....+.|
T Consensus 234 ~l~~~~~~~~W 244 (712)
T PF13166_consen 234 ELINNLGNSDW 244 (712)
T ss_pred HHHhccchhhH
Confidence 33333344556
No 242
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.29 E-value=2.1e+02 Score=27.34 Aligned_cols=55 Identities=31% Similarity=0.237 Sum_probs=46.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 464 VHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ 518 (746)
Q Consensus 464 ~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRq 518 (746)
...+.+.++++.-+=|.+|-|+...+.+|++..++=+.+-+|..+|-.+.+.++.
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999988777777777777766666644
No 243
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=53.00 E-value=3e+02 Score=28.95 Aligned_cols=48 Identities=0% Similarity=-0.134 Sum_probs=24.8
Q ss_pred cceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 411 PIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 411 p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
-|.+.++|.--|=-.+...|. .+++..+.+++.+.+..+..|..+..+
T Consensus 61 ~v~V~~G~~VkkGq~L~~ld~--~~~~~~l~~a~a~l~~a~a~l~~~~~~ 108 (346)
T PRK10476 61 ELAVTENQAVKKGDLLFRIDP--RPYELTVAQAQADLALADAQIMTTQRS 108 (346)
T ss_pred EEEeCCCCEEcCCCEEEEECc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566766655555555553 233445555555555555555544433
No 244
>KOG3478|consensus
Probab=52.75 E-value=1.1e+02 Score=29.82 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=35.1
Q ss_pred HHHHHhhhHHHHH--------HHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 502 TVAANARLESELV--------VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQL 571 (746)
Q Consensus 502 twaEyaRLE~EV~--------~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqL 571 (746)
--+|.+.||.|-. .+||.|.+.+.|. ...-..|.+|+.|+++-+.++++.=..-...|-++
T Consensus 41 V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV---------~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 41 VLEELDLLEEDSNVYKLIGPVLVKQELEEARTNV---------GKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred HHHHHHHhcccchHHHHhcchhhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555532 3456666555431 22445678999999988888776544443344333
No 245
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.74 E-value=26 Score=28.81 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772 484 ELSRVRSILAHNSKKLEETVAANARLESELVVLR 517 (746)
Q Consensus 484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LR 517 (746)
.+.++++++++..+++++.-.++..|+.++..|+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788889999999999999999999999883
No 246
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=52.51 E-value=55 Score=34.49 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=39.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772 486 SRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555 (746)
Q Consensus 486 srVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg 555 (746)
.+.-..+...-+.+.+..+||.+|..++..|++.++...+ .+++|..|.+.+++
T Consensus 55 ~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~----------------~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 55 REVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQ----------------NLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhc
Confidence 3445566667778888999999999999999887774432 27778777766554
No 247
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=52.47 E-value=2.8e+02 Score=28.54 Aligned_cols=130 Identities=16% Similarity=0.016 Sum_probs=72.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA 505 (746)
Q Consensus 426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE 505 (746)
....|.++......+..+.++-|.||..+... .+...+ .+=-.|+++|.++|..|..+-.-++...+.
T Consensus 137 ~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~--------~~~~~l----~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 137 YDIFDAIIDSYFPLLENIEDELEELEDEIISG--------PTSTLM----DEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHhcC--------CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777777778888888888887755321 122233 334457778888887777666555554433
Q ss_pred Hh--hh-HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 506 NA--RL-ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 506 ya--RL-E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
.. .+ +..-..+|.-+. +... . ......+...+..+.+.-.++..+|+ ...|+.||--+--+-
T Consensus 205 ~~~~~~~~~~~~~~~dv~~-~~~~-l--------~~~~~~~~e~l~~l~d~~~~~~s~~~--N~~mk~LTvvt~Ifl 269 (318)
T TIGR00383 205 THLPIQTEEVREYLRDIYD-HILS-L--------LEMIETYRELLSSLMDLYLSLVNNKM--NEIMKILTVVSTIFI 269 (318)
T ss_pred CCcccCCHHHHHHHHHHHH-HHHH-H--------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 21 12 222223333221 1110 0 01233355666777777777776654 467888886665555
No 248
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.25 E-value=1.2e+02 Score=35.58 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=38.7
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 463 GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 463 ~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkL 520 (746)
.|.++=-.+.++..|+..|++++..++.++++... .=.+|.+||+|+...|...
T Consensus 333 ~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~----~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 333 LYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPS----TQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred HhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHH
Confidence 35644334477888889999999999888876543 3447888888888776554
No 249
>KOG0972|consensus
Probab=52.22 E-value=57 Score=36.07 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q psy2772 476 RQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529 (746)
Q Consensus 476 ~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~ 529 (746)
+|-|-++-+|+.+|----+.+--|+.-.++..+.=-|++++||.|.++....+.
T Consensus 280 q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msD 333 (384)
T KOG0972|consen 280 QKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSD 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 344444444555555555556667777888888888999999999988865444
No 250
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=52.07 E-value=1.4e+02 Score=29.55 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
--.+..+|...+..+....+.|...-.++..|+.++..|...|.+...
T Consensus 97 L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 97 LVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666777777777777777777777777777777776543
No 251
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.06 E-value=2.8e+02 Score=33.43 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
..|+.+-+..+. +++.++|..|..|.++
T Consensus 496 ~~ii~~A~~~~~---~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 496 HFIIEQAKTFYG---EFKEEINVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 556666666654 4555666666655543
No 252
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=51.96 E-value=89 Score=26.26 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=38.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccC----CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVH----ASPAEVERYRRQQRLLERELSRVRSILA 493 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~----dqPa~~EKi~~QQrlLE~eLsrVRaeLS 493 (746)
|.+..+..|..+.++|+.-+..+..+|..-. ..|.-+++-+.+...++.++..+...|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888888888888888875322 3445556666666666666666655554
No 253
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=51.64 E-value=1.3e+02 Score=28.66 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=68.8
Q ss_pred cCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh--------hhccCCChHHHHHHHHH
Q psy2772 406 VRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHK--------MHGVHASPAEVERYRRQ 477 (746)
Q Consensus 406 vrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq--------ME~~~dqPa~~EKi~~Q 477 (746)
..+..||..+..=+|-- | -.++.+.+.+++.++.++.+|+.+=++ |..|..=-..+..-..+
T Consensus 18 ~~~~~pv~~al~~ld~s-s---------~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~ 87 (142)
T PF04048_consen 18 TDDFNPVELALSLLDDS-S---------VGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQER 87 (142)
T ss_pred cCCCcHHHHHHHhcCCC-C---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776665444420 0 024456777778888888888765333 44444444455556666
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ 518 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRq 518 (746)
=+.|-+.|...+..|.-.+++|.+-|.+..+...=+..|.+
T Consensus 88 i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~ 128 (142)
T PF04048_consen 88 IRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQ 128 (142)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888988899999999998887766666543
No 254
>KOG0250|consensus
Probab=51.63 E-value=3.1e+02 Score=34.74 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhhccCCChhhhHHHHHHHHhcccccccCCcceeEEeec
Q psy2772 197 VLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLT 245 (746)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gye~~~vNtLRLw 245 (746)
+|.|..--+-+|-.+.+ |-..|+.|-.-| .+.-++++.|-
T Consensus 78 IltAl~lglG~rAs~tn---RgsslK~lIK~G------~~~A~IsItL~ 117 (1074)
T KOG0250|consen 78 ILTALTLGLGGRASATN---RGSSLKDLIKDG------CSSAKISITLS 117 (1074)
T ss_pred HHHHHHHhhcccccccc---chhhHHHHHhCC------CcceEEEEEEe
Confidence 34444444444444443 334444443322 33344566665
No 255
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=51.55 E-value=3.9e+02 Score=33.06 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=14.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
+.++..+..++...+.++..+..+..+
T Consensus 619 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (1047)
T PRK10246 619 HELQGQIAAHNQQIIQYQQQIEQRQQQ 645 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555
No 256
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=51.26 E-value=93 Score=26.94 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=43.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCC--ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHA--SPA-EVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~d--qPa-~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa 504 (746)
.+.++...|+.|.+.-+.|-..++.+..++....+ ++. .++.+.|..+ |.++|..+......|.+.=.
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~K-----L~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKK-----LVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777778888877755553 333 4455556655 45666666666666655433
No 257
>KOG0249|consensus
Probab=51.08 E-value=2.1e+02 Score=35.14 Aligned_cols=90 Identities=18% Similarity=0.089 Sum_probs=60.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccC-------CChHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVH-------ASPAEVE--------RYRRQQRLLERELSRVRSILAHNSKKL 499 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~-------dqPa~~E--------Ki~~QQrlLE~eLsrVRaeLSrnSkEL 499 (746)
..+++++.|...-+.+-.-|..++++.++.- ++-.+.. .+..-...|+++|-.++.+|...-++=
T Consensus 160 ~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k 239 (916)
T KOG0249|consen 160 NIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDK 239 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666655555555666666544322 1111211 122234568999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 500 EETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 500 E~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
|+-.+++.+|-+++.+||...+.+.
T Consensus 240 ~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 240 DKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999997666655
No 258
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=51.08 E-value=2.1e+02 Score=26.60 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=47.8
Q ss_pred cceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChH
Q psy2772 411 PIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPA 469 (746)
Q Consensus 411 p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa 469 (746)
+.||+.-|++.-+.-.-...++...++.+...++.+-+.++..|..+.++++.....+.
T Consensus 16 ~~kIa~Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls 74 (158)
T PF03938_consen 16 SPKIAVVDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLS 74 (158)
T ss_dssp --CEEEE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----S
T ss_pred cCcEEEeeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999999999999999999999999999999999999888765433
No 259
>KOG0243|consensus
Probab=50.90 E-value=3.5e+02 Score=34.23 Aligned_cols=87 Identities=20% Similarity=0.104 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChH------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPA------EVERYRRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa------~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
.|.+|+|+-..|-.||+| |.-.|.+---|-++-. +......|-.-|+++|-..+.+|...+-.+-+-
T Consensus 402 K~~llKd~~~EIerLK~d-------l~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~ 474 (1041)
T KOG0243|consen 402 KKTLLKDLYEEIERLKRD-------LAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ 474 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 356777776666666655 3333433222222211 122333344445555555555555554444444
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q psy2772 503 VAANARLESELVVLRQKLQW 522 (746)
Q Consensus 503 waEyaRLE~EV~~LRqkLQa 522 (746)
...|..|=.++..|+.+||.
T Consensus 475 ~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 475 LEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555543
No 260
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=50.88 E-value=37 Score=33.47 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=1.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhH-----hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRH-----KMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL 509 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~q-----qME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL 509 (746)
.|-+++..|+.....|......+.. .-......++.+.....+---|+.||...+..-+.+...|-.+-.+...|
T Consensus 28 ~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l 107 (194)
T PF08614_consen 28 RLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQEL 107 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 3444555555555555543222222 11111222333334444445566777766666666665555555555555
Q ss_pred HHHHHHHHHHH
Q psy2772 510 ESELVVLRQKL 520 (746)
Q Consensus 510 E~EV~~LRqkL 520 (746)
+.++......|
T Consensus 108 ~~~~~~~~~~l 118 (194)
T PF08614_consen 108 EKELSEKERRL 118 (194)
T ss_dssp ------HHHHH
T ss_pred hhhHHHHHHHH
Confidence 55444443333
No 261
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=50.85 E-value=1.3e+02 Score=32.73 Aligned_cols=40 Identities=13% Similarity=-0.071 Sum_probs=22.6
Q ss_pred CcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy2772 410 SPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLE 451 (746)
Q Consensus 410 ~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LE 451 (746)
+||-........|++-+.. .=|...+.+++.|..+-+.|+
T Consensus 242 ~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~L~~~~~~l~ 281 (388)
T PF04912_consen 242 SPLLPALNELERQLSLLDP--AKLDSIERRLKSLLSELEELA 281 (388)
T ss_pred chHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666532 235555666666666555544
No 262
>KOG1003|consensus
Probab=50.75 E-value=3.3e+02 Score=28.75 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=79.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHH------HHHHHHHHHHHHHHHHHHHhh-------hHHHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERY------RRQQRLLERELSRVRSILAHN-------SKKLE 500 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi------~~QQrlLE~eLsrVRaeLSrn-------SkELE 500 (746)
..+-.+|+.|+++-|.-+.=|..+.++++...-.-...+.. +-|| +++..--..++|... -.|.|
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~k--dEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQK--LEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667889999888888888888888865443222212211 1222 233333333344333 33444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy2772 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQ 580 (746)
Q Consensus 501 ~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~ 580 (746)
+-..-..=+|++|+..-....+-- ..-.+|+-|++-+..=..-|++.=+.+++..+..-..-..+..
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~E-------------s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd 151 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAE-------------SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD 151 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445555544433333211 2345577777777776666666655555555544444444444
Q ss_pred cccCCCcccccccccc
Q psy2772 581 QIRPGPTGVAVAGKSV 596 (746)
Q Consensus 581 qi~~~~~~~~~~~~~~ 596 (746)
+++-..+.+-.+.++|
T Consensus 152 KLkEaE~rAE~aERsV 167 (205)
T KOG1003|consen 152 KLKEAETRAEFAERRV 167 (205)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 5555556565555555
No 263
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=50.46 E-value=2e+02 Score=31.71 Aligned_cols=94 Identities=24% Similarity=0.295 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHH-------HHHHHHHH-
Q psy2772 484 ELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL-------RRVQALVG- 555 (746)
Q Consensus 484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekEL-------wRIQdVvg- 555 (746)
+|.-.-++-+....|||+-=-.-.|||.||+-.|..|-+-...+.- +...+.-++.-+ -|+||-|.
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dq------sq~skrdlelafqr~rdEw~~lqdkmn~ 137 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQ------SQTSKRDLELAFQRARDEWVRLQDKMNS 137 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHhhHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3455556777777888888888899999999998888766543211 111222333333 34555543
Q ss_pred ---HHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 556 ---DLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 556 ---gLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
.|.-+=.-||+|.-.--.++++|..+.+
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh 168 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELH 168 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667776666666666665444
No 264
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.40 E-value=1.5e+02 Score=30.11 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHH-----------HhhhHHHHHHHHHHHHHH
Q psy2772 470 EVERYRRQQRLLERELSRVRSILAHNS--------------KKLEETVAA-----------NARLESELVVLRQKLQWS 523 (746)
Q Consensus 470 ~~EKi~~QQrlLE~eLsrVRaeLSrnS--------------kELE~twaE-----------yaRLE~EV~~LRqkLQaQ 523 (746)
+.+-+....+.||.+|..+|.++-.+- +.||+.|.+ ..+||+||..||++..++
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555444332 356666654 345556666665555543
No 265
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=50.15 E-value=2.6e+02 Score=28.51 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=46.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHh-hhccCCC--------h-----------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHK-MHGVHAS--------P-----------AEVERYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qq-ME~~~dq--------P-----------a~~EKi~~QQrlLE~eLsrVRaeLSr 494 (746)
..+.+++.+++.-.+||++|..--++ .+....= . ...+.+...=..|...+..++..|..
T Consensus 31 ~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~e 110 (247)
T PF06705_consen 31 QEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQE 110 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777643322 2222110 0 12222333334455555555555555
Q ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHHHHh
Q psy2772 495 NSKKLEETVAAN-ARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 495 nSkELE~twaEy-aRLE~EV~~LRqkLQaQr~ 525 (746)
...+....+... ..|..+|..|+.++...+.
T Consensus 111 e~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~ 142 (247)
T PF06705_consen 111 EKEERPQDIEELNQELVRELNELQEAFENERN 142 (247)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555432 2456666666666665543
No 266
>KOG1962|consensus
Probab=50.01 E-value=89 Score=32.74 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPG 585 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~ 585 (746)
.+++|.+.|.=+..|.+|=+++..--+.|.|.+..|+.||.-+
T Consensus 170 ~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 170 KQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 4678888888889999999999999999999999999888644
No 267
>KOG1029|consensus
Probab=49.86 E-value=6.2e+02 Score=31.75 Aligned_cols=92 Identities=30% Similarity=0.376 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---hHHHHHHHHHHHHHHHhhhccCCCCCCCC----------------
Q psy2772 477 QQRLLERELSRVRSILAHNSKKLEETVAANAR---LESELVVLRQKLQWSRREVCNGTASLSNG---------------- 537 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR---LE~EV~~LRqkLQaQr~~~~~~~~~~~~~---------------- 537 (746)
-||.||=|=.|+-.++.+--+|=|..+-.|++ |+.|++-|--++|+=-...+.. -.+..
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dv--r~~~tt~kt~ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDV--RVDITTQKTEIEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--eeccchHHHHHHHhhhHHHHH
Confidence 46778888888888999888888888888776 6788888877777421110000 00011
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 538 -PSVAALEAELRRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 538 -qekAqLekELwRIQdVvggLsrQRqeLs~qVrq 570 (746)
.+..+|+.+|.-.|..+.-|---||+|..|.+|
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344455666666666555555566666655544
No 268
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.53 E-value=48 Score=38.06 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
..||.+|...|.++...+++++..=+....||.|+..|++.+.
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766666665555566677788877777763
No 269
>KOG4643|consensus
Probab=49.40 E-value=6e+02 Score=32.54 Aligned_cols=48 Identities=19% Similarity=-0.045 Sum_probs=23.8
Q ss_pred ecchhhhhhhhhhhhhhhh-------hhhhhhhhhhhhHH---HHHHHHHHHhHhhhc
Q psy2772 416 IGVMIHAISRDQIASKLHS-------RGRNICSVQGQAKE---MLENALGSLRHKMHG 463 (746)
Q Consensus 416 e~d~d~klSr~ce~dKilq-------elE~kLq~Lk~DKD---~LEsAL~~L~qqME~ 463 (746)
.+++.-++|.+-+..|..+ .+|++|.+|.+-|- .+|+.|..=..+|+.
T Consensus 393 sss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~ 450 (1195)
T KOG4643|consen 393 SSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE 450 (1195)
T ss_pred hhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555444 44555555544443 334444444444443
No 270
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.31 E-value=39 Score=31.09 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=37.6
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQ 478 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQ 478 (746)
..+++..+..++++.++|+.--..|+.+++..++++.++|+++..+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~ 74 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNE 74 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 5667788888888888888888888999999988888888777543
No 271
>PLN02939 transferase, transferring glycosyl groups
Probab=49.07 E-value=1.8e+02 Score=36.28 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 479 RLLERELSRVRSILAH-----------NSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 479 rlLE~eLsrVRaeLSr-----------nSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
++||++|...|.+|++ .++||.-.-.||--|-.++.-||.+|-+.-+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (977)
T PLN02939 197 EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAE 254 (977)
T ss_pred hhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999987 3688888899999999999999999987654
No 272
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.85 E-value=5.8e+02 Score=31.11 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
....||+||.-...+.++-+ ..|+.+-+.|..-|+.|.|-.++
T Consensus 420 ri~~LE~ELr~l~~~A~E~q---~~LnsAQDELvtfSEeLAqLYHH 462 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQ---GSLNSAQDELVTFSEELAQLYHH 462 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788877777777643 34666666677666666655444
No 273
>KOG2129|consensus
Probab=48.68 E-value=4.9e+02 Score=30.46 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred CcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHH------HhHhhh----ccCCChHHHHHHHHHHH
Q psy2772 410 SPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGS------LRHKMH----GVHASPAEVERYRRQQR 479 (746)
Q Consensus 410 ~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~------L~qqME----~~~dqPa~~EKi~~QQr 479 (746)
+-.|+.--++.-+|. +|+.-|+-.|=.+++.|.+||+-|-.-|+- +-+-|- ...|.| +.++ .--+
T Consensus 182 eQLRre~V~lentlE--QEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a-~~~~--~hi~ 256 (552)
T KOG2129|consen 182 EQLRREAVQLENTLE--QEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEA-AAEK--LHID 256 (552)
T ss_pred HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchH-HHHH--HHHH
Confidence 333444444444443 444455555556666666666666555531 111111 111222 2222 2345
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
.|+.|..|.|-.|++.-|+-.+-...|
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998865544433333
No 274
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.30 E-value=5.9 Score=45.79 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
..-.++-|+.+.+.-+..|.+.|..|......|.+....|.
T Consensus 385 ~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 385 RADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457788888888888888888888777777776655553
No 275
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.23 E-value=4.8e+02 Score=30.00 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred HHHHHHhhhccCCChh-------hhHHHHHHHHhcccccccCCcceeEEeec
Q psy2772 201 YIRYVSARLADLETPK-------RMEHLQKLEELKRHLVELEKQVSITFNLT 245 (746)
Q Consensus 201 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~Gye~~~vNtLRLw 245 (746)
|-|+...++.+||.-| =-+.|.|+..| +++| ++-.+++-|
T Consensus 23 ~rr~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l--~l~G---es~~~f~~w 69 (569)
T PRK04778 23 LRKRNYKRIDELEERKQELENLPVNDELEKVKKL--NLTG---QSEEKFEEW 69 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcC--CCCc---ccHHHHHHH
Confidence 3355555565555422 22344555544 5566 444466777
No 276
>KOG4302|consensus
Probab=48.22 E-value=1.9e+02 Score=34.68 Aligned_cols=139 Identities=18% Similarity=0.165 Sum_probs=78.3
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhh-hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 417 GVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKM-HGVHASPAEVERYRRQQRLLERELSRVRSILAHN 495 (746)
Q Consensus 417 ~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqM-E~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn 495 (746)
+++++++...-.-+-.+.+|..+=..+-+.++..++.|..+++.. +-|. .-++.++.=+.-|..+
T Consensus 4 ~~~~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~---~kve~a~~~~~~L~~~----------- 69 (660)
T KOG4302|consen 4 MDSEVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYK---RKVEEASESKARLLQE----------- 69 (660)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----------
Confidence 344555544444456777777777777777777777777777663 3332 2222222222222222
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2772 496 SKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKS 575 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s 575 (746)
.+-+|.|+.-|-+.|-..... +. ..+ +.---|.-+|-+|.-++++|.+|..|=-++.+.+-.+-
T Consensus 70 ----------ia~~eael~~l~s~l~~~~~~---~~-~~~--k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 70 ----------IAVIEAELNDLCSALGEPSII---GE-ISD--KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred ----------HHHHHHHHHHHHHHhCCcccc---cc-ccc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333333222110 00 000 11224899999999999999999988888888777777
Q ss_pred ccccccccCC
Q psy2772 576 NSLSQQIRPG 585 (746)
Q Consensus 576 ~~l~~qi~~~ 585 (746)
..|...|.-.
T Consensus 134 e~l~~~l~g~ 143 (660)
T KOG4302|consen 134 EKLCEELGGP 143 (660)
T ss_pred HHHHHHhcCC
Confidence 7777666544
No 277
>KOG0963|consensus
Probab=48.21 E-value=3.9e+02 Score=32.16 Aligned_cols=70 Identities=31% Similarity=0.388 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhh--hHHHH-------------HHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHH
Q psy2772 479 RLLERELSRVRSILAHN--SKKLE-------------ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAAL 543 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrn--SkELE-------------~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqL 543 (746)
..||++....|.+++.+ +++++ .-=.++++|=.||..++..+++-|+.+++ +-..|
T Consensus 252 ~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~---------qI~~l 322 (629)
T KOG0963|consen 252 VFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA---------QISAL 322 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence 46899999999888876 34444 22357788888888888888888876554 44555
Q ss_pred HHHHHHHHHHHHHH
Q psy2772 544 EAELRRVQALVGDL 557 (746)
Q Consensus 544 ekELwRIQdVvggL 557 (746)
+++|.---.+++-|
T Consensus 323 e~~l~~~~~~leel 336 (629)
T KOG0963|consen 323 EKELKAKISELEEL 336 (629)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444433333
No 278
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.12 E-value=2.5e+02 Score=31.06 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy2772 477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGD 556 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvgg 556 (746)
.+..|..-|...|.+--+...|++.--..+.-+..|.-+||.++..++... .+..+..++.++..|-.+|+.++.-...
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~-~~~~~~~~~~ere~lV~qLEk~~~q~~q 144 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD-EGIGARHFPHEREDLVEQLEKLREQIEQ 144 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh-ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555666666666666777777777766554321 2222222335666665555554443333
Q ss_pred HHH-------HHHHHHHHHHHHhhhcccccccc
Q psy2772 557 LQR-------QRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 557 Lsr-------QRqeLs~qVrqLt~~s~~l~~qi 582 (746)
|++ -++||-.-=+-...+.|.|.+++
T Consensus 145 Le~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 145 LERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 12333333333445566665555
No 279
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.10 E-value=18 Score=38.45 Aligned_cols=73 Identities=27% Similarity=0.384 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLs 558 (746)
...+.+|..+...|+..-++++.+..+-.+||.++.....+ |.|.+.++.+|+
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k---------------------------l~rA~~Li~~L~ 290 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK---------------------------LERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------hccHHHHHhhhc
Confidence 34445555555555555555555555555555555444444 445556666666
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q psy2772 559 RQRQELSAQVKQLTEKSNSL 578 (746)
Q Consensus 559 rQRqeLs~qVrqLt~~s~~l 578 (746)
..|..=+.++.+|.++..+|
T Consensus 291 ~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 291 GEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHCCHCHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHhccc
Confidence 66665555555555544444
No 280
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.07 E-value=2.4e+02 Score=26.53 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 448 EMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 448 D~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkL 520 (746)
+....++..++.=|.++..+- .++..|...+.+.+.++.+.....+..-...+.+|+++..+..+.
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~-------~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~ 96 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDM-------EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKE 96 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333 345555555555555555555555555555555555555444433
No 281
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.27 E-value=1.4e+02 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=13.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhc
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHG 463 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~ 463 (746)
++..++.++.+.+.++..+...+.++..
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~a~~~l~~ 126 (334)
T TIGR00998 99 LEITVQQLQAKVESLKIKLEQAREKLLQ 126 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555444
No 282
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.20 E-value=1.1e+02 Score=35.68 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=41.4
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHH---------HhHhhhccCCChHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGS---------LRHKMHGVHASPAEVERYRRQQ--RLLERELSRVRSIL 492 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~---------L~qqME~~~dqPa~~EKi~~QQ--rlLE~eLsrVRaeL 492 (746)
..+=+.+|+..+..|+++++.||.-|+. .+.++-++++||++......++ ..|+.|--..++.|
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888888888877775 3356888999999887744432 34444444444444
No 283
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=47.19 E-value=1.6e+02 Score=32.01 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 469 AEVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 469 a~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
+.++....+-...++++.|.+.+..+.. .+||++-+++...+.++...++.|....
T Consensus 127 a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l~~~~ 185 (390)
T PRK15136 127 ANIELQKTALAQAQSDLNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQQYNANQ 185 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667778888888888887763 6889998888888888888888776543
No 284
>KOG0804|consensus
Probab=47.17 E-value=5e+02 Score=30.40 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
+++.-.|-......+..+-++|..|+|-|.
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 455555666777788888888999999887
No 285
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.16 E-value=3.4e+02 Score=28.28 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 472 ERYRRQQRLLERELSRVRSILAHN-----SKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 472 EKi~~QQrlLE~eLsrVRaeLSrn-----SkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
-++-++....+.+|.+.|+.+++. +.|++++=.|+..+|.-+.+.+...+
T Consensus 129 ~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe 183 (234)
T cd07664 129 MKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFE 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788889999999999998775 45899999999999999998888666
No 286
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.85 E-value=6.4e+02 Score=31.00 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy2772 542 ALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 542 qLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi 582 (746)
....++..++.++..+..+..++-.+..+|.+.-..+.++|
T Consensus 532 ~~~~~~~~L~~~~~~l~~ql~~l~~q~~~lq~ql~ql~~ql 572 (1042)
T TIGR00618 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555777777777777776666666665555544443
No 287
>PF15456 Uds1: Up-regulated During Septation
Probab=45.99 E-value=1.2e+02 Score=28.97 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=66.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEV-----ERYRRQQRLLERELSRVRSILAHNSKKL 499 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~-----EKi~~QQrlLE~eLsrVRaeLSrnSkEL 499 (746)
-..+..|=++-|+.+|..+++. -.||+-+-.+.+.|..+...|... +.+. ..-.+|+...++.
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~k-l~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~-----------~~eeel~~~~rk~ 90 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRK-LALESKIRDAAHSLSRLYSSSSRRARFSRESSL-----------KAEEELAESDRKC 90 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccccCCCcchHH-----------HHHHHHHHHHhhH
Confidence 3456677788888999998765 448888888888887776554421 1122 2234677788999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 500 EETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 500 E~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
|+...+..++|+-+..+|++|-+...
T Consensus 91 ee~~~eL~~le~R~~~~~~rLLeH~A 116 (124)
T PF15456_consen 91 EELAQELWKLENRLAEVRQRLLEHTA 116 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986653
No 288
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.57 E-value=1.3e+02 Score=28.84 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS-KKLEETVAANARLES 511 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS-kELE~twaEyaRLE~ 511 (746)
+.++.+.+..|+.+.-.|+.-|..|...+--.. =...++.+..+-..|+..|...|..-..+| .++++.-.+|.++..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-l~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEE-LREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 556666677777776666666666665532111 123344444455555555555555333333 344444444444433
No 289
>KOG0998|consensus
Probab=45.40 E-value=6.4e+02 Score=31.00 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccccccccC-CCccccccccccCCCCCCCcccccccCCCCCCcc
Q psy2772 541 AALEAELRRVQALVGDLQRQRQELSAQVK-QLTEKSNSLSQQIRP-GPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGV 618 (746)
Q Consensus 541 AqLekELwRIQdVvggLsrQRqeLs~qVr-qLt~~s~~l~~qi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (746)
+.|+.=+...+.....|...++....+.. ..++-..-+.-.|.+ +.-.+-...|.-|.....-..+++.+...+.+-.
T Consensus 557 ~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~~l~~~~e~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~~ 636 (847)
T KOG0998|consen 557 TLLDDSFKVGMELFEQLLKGSKLVNGKDQNSSTELAGYLEGTINGKGLETSMDDSKEQKNEDDKKSELSTDPEENPDSYS 636 (847)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhcccccccccccccccchhhcccccccccccccCcccCCcccc
Confidence 33444443344444444444444443333 444444445555554 2333444455555555555556666555555555
Q ss_pred ccccCC
Q psy2772 619 AVDTRI 624 (746)
Q Consensus 619 ~~~~~~ 624 (746)
-+.+..
T Consensus 637 ~~~~~~ 642 (847)
T KOG0998|consen 637 SVPSAS 642 (847)
T ss_pred cccccc
Confidence 555555
No 290
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=45.26 E-value=1.6e+02 Score=23.72 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=50.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhhhcc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 439 ICSVQGQAKEMLENALGSLRHKMHGV--HASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 439 kLq~Lk~DKD~LEsAL~~L~qqME~~--~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
.++...++.+.|..-|......|... ..++.+++....+.+.+++++...+..|..+...-...
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L 67 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQL 67 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888887333 46789999999999999999999888888776544444
No 291
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.97 E-value=1.4e+02 Score=28.55 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=34.3
Q ss_pred CCCcce-eeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC
Q psy2772 408 PVSPIR-IRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVH 465 (746)
Q Consensus 408 p~~p~r-i~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~ 465 (746)
|+.|-. =..-|++.-+.+-+.+.+-|.....-|..|++++++.|.+|..-...|++..
T Consensus 10 ~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le 68 (160)
T PF13094_consen 10 PFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELE 68 (160)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 2344556566666666666666666666777777777766666655555544
No 292
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.96 E-value=4e+02 Score=28.18 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=42.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHH
Q psy2772 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQ----QRLLERELSRVRSILAHNSKK 498 (746)
Q Consensus 427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~Q----QrlLE~eLsrVRaeLSrnSkE 498 (746)
-..|+--.+..+.+..|.+.--.||++...+-++...|.+.-....++-.= -.-|.+-|..+-.-+-+.+++
T Consensus 50 ~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~ 125 (243)
T cd07666 50 KNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKA 125 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 346666777777777777777777777777776665665555555555443 222444454444444433333
No 293
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.83 E-value=4.3e+02 Score=28.51 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy2772 541 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ 581 (746)
Q Consensus 541 AqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~q 581 (746)
..++.-|+.|+..|+.=...+..+..--..|+++-..|..|
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQ 150 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQ 150 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888766666655555555555555544443
No 294
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.71 E-value=3e+02 Score=28.61 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-h-h--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAH-N-S--KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAAL 543 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSr-n-S--kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqL 543 (746)
+-+.-+++.|-..|+..|..+...-.. . . .++.-.= .-||+=|.=-++.|+...++.+ ..+.--.-+
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk---~e~EqLL~YK~~ql~~~~~~~~------~~~~~l~~v 165 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVK---REFEQLLDYKERQLRELEEGRS------KSGKNLKSV 165 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHH---HHHHHHHHHHHHHHHhhhccCC------CCCCCHHHH
Confidence 345666666666677776666665554 1 1 0111000 1234444444555554432111 233445568
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2772 544 EAELRRVQALVGDLQRQ 560 (746)
Q Consensus 544 ekELwRIQdVvggLsrQ 560 (746)
..+|.-|++=|.+|+..
T Consensus 166 ~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 166 REDLDTIEEQVDGLESH 182 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999998764
No 295
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.50 E-value=17 Score=32.60 Aligned_cols=41 Identities=5% Similarity=0.051 Sum_probs=27.2
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP 468 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP 468 (746)
+-|..|..+...+..|.++...|..-+..|..++..+....
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~ 62 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEE 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 55777788888888888888888888888888888876543
No 296
>KOG0612|consensus
Probab=43.99 E-value=4.1e+02 Score=34.35 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 542 ALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 542 qLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
.+-+|..-++.-.....++|.+++..+.-|.+.-.+|+
T Consensus 599 ~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~ 636 (1317)
T KOG0612|consen 599 KLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLE 636 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555556666666666777776666666665555554
No 297
>KOG4673|consensus
Probab=43.96 E-value=3.5e+02 Score=33.30 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW 522 (746)
Q Consensus 470 ~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa 522 (746)
+=||+.+||--=..-+...||.+-.+=+=+++-=.-...|+.|...||+.|..
T Consensus 461 EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~ 513 (961)
T KOG4673|consen 461 EGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRD 513 (961)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 34556666555555555556555444333333333445677777777776653
No 298
>KOG4657|consensus
Probab=43.41 E-value=4.6e+02 Score=28.34 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLs 558 (746)
..|...|...-.+|.+..+=+++-=++-+++|+|+--+++.|..-+.+... ++.|+- |..+=++
T Consensus 61 e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~-------------lkeE~d---d~keiIs 124 (246)
T KOG4657|consen 61 ENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQL-------------LKEEKD---DSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhh---hHHHHHH
Confidence 345555666666677766666777778889999999999988866543111 344444 6677778
Q ss_pred HHHHHHHHH
Q psy2772 559 RQRQELSAQ 567 (746)
Q Consensus 559 rQRqeLs~q 567 (746)
.+|+-|+.+
T Consensus 125 ~kr~~~~Ka 133 (246)
T KOG4657|consen 125 QKRQALSKA 133 (246)
T ss_pred HHHHHHHHH
Confidence 888755543
No 299
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=42.73 E-value=4.7e+02 Score=28.31 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
.|-.++...|.-|.+.+.-=+..+..|...+..+.+|.....+-... .|+...+.....+...++++..+++.|..
T Consensus 131 ~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~----~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~ 206 (353)
T cd09236 131 KLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENF----VPSSRRPSIPPELERHVRALRVSLEELDR 206 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHh----CCCCCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 56678888888888777555555555666667777774433221110 01111111112467788888888887777
Q ss_pred HHHHHHHHHHHHhhhccc
Q psy2772 560 QRQELSAQVKQLTEKSNS 577 (746)
Q Consensus 560 QRqeLs~qVrqLt~~s~~ 577 (746)
-+.+=..-+..|.++++.
T Consensus 207 l~~eR~~~~~~Lk~k~~~ 224 (353)
T cd09236 207 LESRRRRKVERARTKARA 224 (353)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666655444
No 300
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.62 E-value=3e+02 Score=31.14 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=60.6
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa 504 (746)
......-.++.+-+.|..+++....|+.-++.|+.++.+ .+.+.-.-||+|--|. +.||+-+|
T Consensus 206 ~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~---------e~~~~~~~LqEEr~R~--------erLEeqlN 268 (395)
T PF10267_consen 206 VSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQR---------EYQFILEALQEERYRY--------ERLEEQLN 268 (395)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHH--------HHHHHHHH
Confidence 334444555566666777888888888888888876432 2234444555554443 23555555
Q ss_pred HHhhhH-HHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy2772 505 ANARLE-SELVVLRQKLQWSRREVCNGTASLSNGPSVAALE--AELRRVQALVGDLQRQRQELS 565 (746)
Q Consensus 505 EyaRLE-~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLe--kELwRIQdVvggLsrQRqeLs 565 (746)
|.--|= +|+..|||.|.- ++ ++.+-+ .=.+-|+++|+-+|..=..|.
T Consensus 269 d~~elHq~Ei~~LKqeLa~-~E-------------EK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 269 DLTELHQNEIYNLKQELAS-ME-------------EKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh-HH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 554442 356666666531 11 122111 123456677777776655555
No 301
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.51 E-value=2.2e+02 Score=24.49 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 447 KEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 447 KD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
|+.|...|..++.+++...+. +..+......|++....++. .+..+...|++.|.+...
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~---~~~l~~~~~~l~~~~~~~~~-----------------~I~~~f~~l~~~L~~~e~- 60 (127)
T smart00502 2 REALEELLTKLRKKAAELEDA---LKQLISIIQEVEENAADVEA-----------------QIKAAFDELRNALNKRKK- 60 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH-
Confidence 667777777777766554422 33333333333333333333 334444555555554332
Q ss_pred hccCCCCCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772 527 VCNGTASLSNGPSVAALEAELRRVQ-ALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 527 ~~~~~~~~~~~qekAqLekELwRIQ-dVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
.|-.+|.++. ..+..|..|.+.|...+.+|..-.....+.+.
T Consensus 61 ---------------~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 61 ---------------QLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333333322 34455666666666666666655555444443
No 302
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.38 E-value=3.4e+02 Score=28.73 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH---HHhhhccCCCCCCCCcchHHHHHH
Q psy2772 478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW---SRREVCNGTASLSNGPSVAALEAE 546 (746)
Q Consensus 478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa---Qr~~~~~~~~~~~~~qekAqLekE 546 (746)
.+.-.+++..+..+|-...++|+.+-..|...|+++..-|+++++ +. +.+. .+..+.++.++|.
T Consensus 112 ~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~~~~-~k~~----~~~~~sk~~~eK~ 178 (264)
T cd07654 112 LKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQARE-ARSD----LSIFQSRTSLQKA 178 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cccc----ccccchHHHHHHH
Confidence 344456777777788888899999999999999999999999985 22 1121 2345677777776
No 303
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=42.37 E-value=1.2e+02 Score=29.80 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=40.0
Q ss_pred hhhhhhhHHHHHHHHHHHhHhhhccCCChHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772 440 CSVQGQAKEMLENALGSLRHKMHGVHASPAE----VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL 509 (746)
Q Consensus 440 Lq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~----~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL 509 (746)
++.|+.+-+.-..++...++.+.+-..+-.. .++=..+|..|-.++..+.+.+++--+++|+.-+||..|
T Consensus 21 ~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 21 LRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3445555555555555555555555544322 233345666676677777777777767777666666554
No 304
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=42.29 E-value=1e+02 Score=31.46 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 536 NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 536 ~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrq 570 (746)
...+...+|+||.|||.=++.+..|++.|..+|.-
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 44677789999999999999999999999998864
No 305
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=42.18 E-value=4e+02 Score=27.34 Aligned_cols=83 Identities=25% Similarity=0.243 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHhhhHHHHHHHHHHHHHHHhhhccCC--CCCCCCcchHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKL---EETVAANARLESELVVLRQKLQWSRREVCNGT--ASLSNGPSVAALEA 545 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkEL---E~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~--~~~~~~qekAqLek 545 (746)
+..+..|-..|+.+|..-+.+++..=.+| +..-.-=...|.++.-|+..+......+.... .-..+.++++.|++
T Consensus 42 ~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEk 121 (206)
T PF14988_consen 42 VSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEK 121 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777776666666665444 22222223344444444444433222111000 00013489999999
Q ss_pred HHHHHHHH
Q psy2772 546 ELRRVQAL 553 (746)
Q Consensus 546 ELwRIQdV 553 (746)
|+....-+
T Consensus 122 e~~e~~i~ 129 (206)
T PF14988_consen 122 EASELKIL 129 (206)
T ss_pred HHHHhhHH
Confidence 99444433
No 306
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=42.02 E-value=4.2e+02 Score=29.46 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=66.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE----VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~----~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE 510 (746)
+..+-++.|+.|=..|+.|+..++..++.-..+..+ +....-.-..+-..+..+-..|..+.+.|=.-++-...++
T Consensus 238 e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~ 317 (412)
T PF04108_consen 238 ERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFE 317 (412)
T ss_pred HHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777666665555555555 2222222233333333333344443333333444444444
Q ss_pred HHHHHHHHHHHHHHhhh-------ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 511 SELVVLRQKLQWSRREV-------CNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK 574 (746)
Q Consensus 511 ~EV~~LRqkLQaQr~~~-------~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~ 574 (746)
..+...+..++...... ..+. ..=.-|=.|+-|=+.+-.-+.+-=+++..++.+|++.
T Consensus 318 ~~~~~~~~~i~~~~~~l~~L~~~Y~~F~------~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~ee 382 (412)
T PF04108_consen 318 ERWEEEKESIQAYIDELEQLCEFYEGFL------SAYDSLLLEVERRRAVRDKMKKIIREANEELDKLREE 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444343333211 0110 0111255677777777666666667777777777753
No 307
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=42.02 E-value=28 Score=30.67 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=38.3
Q ss_pred cccCCCCcceeeecchhhhhhhh-----hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772 404 IRVRPVSPIRIRIGVMIHAISRD-----QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMH 462 (746)
Q Consensus 404 irvrp~~p~ri~e~d~d~klSr~-----ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME 462 (746)
|+|+..++++| .++.++.... .....-+++++++|+.|++++..++..+..++.++.
T Consensus 40 l~V~~~g~~~i--~~v~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 40 LRVSGEGGVTI--LSVRFRRDFLPEPEKESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred EEEEecCCEEE--EEEEEEEeccCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444 3333333222 345667888899999999999999988888888764
No 308
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=41.10 E-value=2.2e+02 Score=24.03 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhhhhhhHHHH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEML 450 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~L 450 (746)
+...+...+..|..|...++.+
T Consensus 10 ~~~~~~~~~~~l~~L~~~~~~~ 31 (123)
T PF02050_consen 10 AQQELQEAEEQLEQLQQERQEY 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 309
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=40.99 E-value=33 Score=36.09 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=24.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 463 GVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 463 ~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
.-..++++++||. -||.||.+.|++||..-
T Consensus 113 ~~~~~~~AlqKIs----ALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 113 DLPANEAALQKIS----ALEDELSRLRAQIAKIV 142 (253)
T ss_pred ccCCCHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3446788888885 69999999999999864
No 310
>PTZ00332 paraflagellar rod protein; Provisional
Probab=40.93 E-value=6.9e+02 Score=29.78 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhH-HHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------
Q psy2772 433 HSRGRNICSVQGQAK-EMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA------ 505 (746)
Q Consensus 433 lqelE~kLq~Lk~DK-D~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE------ 505 (746)
+++||..||.|.++. +..|+-|..-.++=...-+--.-++-..+|...|+.=|-..-+-+ +..+-|++.|.|
T Consensus 326 I~eLer~Lq~l~~eR~~eV~rRIe~~~rEekRr~~yeqFl~~asQHkqrL~~tv~Ncd~a~-~~~~~lee~V~egc~~i~ 404 (589)
T PTZ00332 326 IQDLERQLQRLGTERFEEVKRRIEENDREEKRRVEYQQFLEVAGQHKKLLELTVYNCDLAL-RCTGLVEELVSEGCAAVK 404 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_pred --HhhhHHHHHHHHHHHHHHHhh------------------------hccCCCCCCCCcchHHHHHHH---------HHH
Q psy2772 506 --NARLESELVVLRQKLQWSRRE------------------------VCNGTASLSNGPSVAALEAEL---------RRV 550 (746)
Q Consensus 506 --yaRLE~EV~~LRqkLQaQr~~------------------------~~~~~~~~~~~qekAqLekEL---------wRI 550 (746)
|.++=+++..++..++..+-. +.- ....+++|+ ..-
T Consensus 405 ~r~DK~~q~L~elll~V~ke~Le~FR~lYltlGeL~yKKErRLEeLDRqI---------R~~hiqrE~amETlDPNAKky 475 (589)
T PTZ00332 405 ARHDKTNQDLAALRLQVHKEHLEYFRMLYLTLGSLIYKKEKRLEEIDRNI---------RTTHIQLEFCVETFDPNAKKH 475 (589)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHhcCcchHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCccccccccccCCC
Q psy2772 551 QALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRP 599 (746)
Q Consensus 551 QdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~~~~~~~~~~~~~~~ 599 (746)
-+--..|-.+|++.+.++..|.++.+.-.+-+.|..-.+-.||....-|
T Consensus 476 seakkeLl~~r~~Ve~eI~~L~~Kq~~alE~F~pTE~aL~~AGveFVHP 524 (589)
T PTZ00332 476 ADMKKELYKLRQGVEEELAMLKEKQAQALEMFKESEEALDAAGIEFVHP 524 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhCCCccCH
No 311
>KOG4637|consensus
Probab=40.86 E-value=3.3e+02 Score=31.28 Aligned_cols=115 Identities=12% Similarity=0.047 Sum_probs=68.1
Q ss_pred cceeeecchhhhhh-hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC--------hHHHHHHHHHHHHH
Q psy2772 411 PIRIRIGVMIHAIS-RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS--------PAEVERYRRQQRLL 481 (746)
Q Consensus 411 p~ri~e~d~d~klS-r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq--------Pa~~EKi~~QQrlL 481 (746)
||-.+--|-.+|=- -.|-.++=+++.-..+|.+.++-|.+-.-....||+|++-+.- .---+++-.|-.++
T Consensus 118 PVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ 197 (464)
T KOG4637|consen 118 PVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLS 197 (464)
T ss_pred hHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333344444433 4455566566666667888888888888888899998876522 11123455566677
Q ss_pred HHHHHHHHHHH-Hhhh--HHHHHHHHHHhhhH-------HHHHHHHHHHHH--HHh
Q psy2772 482 ERELSRVRSIL-AHNS--KKLEETVAANARLE-------SELVVLRQKLQW--SRR 525 (746)
Q Consensus 482 E~eLsrVRaeL-SrnS--kELE~twaEyaRLE-------~EV~~LRqkLQa--Qr~ 525 (746)
+..+-++|.+- ++.. +++..+-+.|.+++ .++.-|.++|++ |+-
T Consensus 198 ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~ 253 (464)
T KOG4637|consen 198 KAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQAL 253 (464)
T ss_pred HHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77777888772 1111 33344444444444 466777777777 553
No 312
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=40.81 E-value=1.5e+02 Score=34.98 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=49.0
Q ss_pred hhhhhHHHHHHHHHHHhHhhhccCCC---h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHhhhHHHHH
Q psy2772 442 VQGQAKEMLENALGSLRHKMHGVHAS---P-AEVERYRRQQRLLERELSRVRSILAHNSKKLE---ETVAANARLESELV 514 (746)
Q Consensus 442 ~Lk~DKD~LEsAL~~L~qqME~~~dq---P-a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE---~twaEyaRLE~EV~ 514 (746)
..++++++++++|...+-+.-...+. | ...+.+..+-..|++++..+..+|.+..++.. ..|.+|-+.|.++.
T Consensus 198 ~~~~~~~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~ 277 (759)
T PF01496_consen 198 SGKELEEKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIY 277 (759)
T ss_dssp EEGGGHHHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchhhHHHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788887777764443332 2 45566777777788888888777776654433 35677777777776
Q ss_pred HHHHHHH
Q psy2772 515 VLRQKLQ 521 (746)
Q Consensus 515 ~LRqkLQ 521 (746)
.....+.
T Consensus 278 ~~~~~~~ 284 (759)
T PF01496_consen 278 EALNKFA 284 (759)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 6666655
No 313
>KOG0980|consensus
Probab=40.47 E-value=7.8e+02 Score=31.07 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=88.1
Q ss_pred hhhhhhhhhh--hhhhhhhhhhhhhhHHHHHHHHHHHhHh----hhccCC-------ChHHHHHHHHHHHHHHHHHHHHH
Q psy2772 423 ISRDQIASKL--HSRGRNICSVQGQAKEMLENALGSLRHK----MHGVHA-------SPAEVERYRRQQRLLERELSRVR 489 (746)
Q Consensus 423 lSr~ce~dKi--lqelE~kLq~Lk~DKD~LEsAL~~L~qq----ME~~~d-------qPa~~EKi~~QQrlLE~eLsrVR 489 (746)
.+|.+-.+-. +++.|.+....+..-++|-.++.-+++. +.+|.+ .-..+++...+-..|...|..+-
T Consensus 400 a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 400 ASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 6788888777777666666666666554 344432 22334456666667777777777
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 490 SILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSA 566 (746)
Q Consensus 490 aeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~ 566 (746)
.+..+.-+|.|.--.-+..||+|+..|--.++..-++..+. ......+.++|+..|.-=..+++.+-.+++|.++
T Consensus 480 ~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~--~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~ 554 (980)
T KOG0980|consen 480 RAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNL--AQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA 554 (980)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777778888777665555433221110 0012357777887777777778888777776655
No 314
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.45 E-value=6.6e+02 Score=29.37 Aligned_cols=57 Identities=26% Similarity=0.250 Sum_probs=38.8
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 463 GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 463 ~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
-..|.|... -+.|=-++..+|.+|..+-++=+.--.||.||-+.-..+.+.++..++
T Consensus 52 iegDTP~DT------lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~ 108 (472)
T TIGR03752 52 IEGDTPADT------LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQ 108 (472)
T ss_pred CCCCCccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345566543 345555666677777777777777888888888877777777775553
No 315
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.10 E-value=1.1e+02 Score=32.07 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=23.4
Q ss_pred HHHHHhhhHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 489 RSILAHNSKKLEETVAANARLESELVVLRQK 519 (746)
Q Consensus 489 RaeLSrnSkELE~twaEyaRLE~EV~~LRqk 519 (746)
..+|+....++|+.-.=+++||.||..+-+.
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666777788888889999999877654
No 316
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.93 E-value=1.9e+02 Score=31.04 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=72.7
Q ss_pred ccccccccccccccccCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH
Q psy2772 391 LACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE 470 (746)
Q Consensus 391 EALEkWpv~~~l~irvrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~ 470 (746)
..|=.|=..+..+..|.= +|.-|.....++..-+...+..|...+..-..|+.-|..|..+.+
T Consensus 197 ~~Lc~WV~A~~~Y~~v~~---------~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~-------- 259 (344)
T PF12777_consen 197 GSLCKWVRAMVKYYEVNK---------EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE-------- 259 (344)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334466666655554431 122245555666667777777777777777777777777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
....++..||.+...+..-|.+..+=+...-.|..|-+..+..++..+.
T Consensus 260 --~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 260 --EAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 3445566677777766666777666666666778888888887777665
No 317
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.72 E-value=2.4e+02 Score=30.46 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=47.6
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 488 VRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ 567 (746)
Q Consensus 488 VRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q 567 (746)
++--|-..-+|=|+.-.++.+||.+++.++..|..-. .++++|+.++.+..+-+.+|...=.||---
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le-------------~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE-------------VENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3333444455666666777788888887777776333 277888888888888888888887777654
Q ss_pred H
Q psy2772 568 V 568 (746)
Q Consensus 568 V 568 (746)
|
T Consensus 207 ~ 207 (290)
T COG4026 207 V 207 (290)
T ss_pred c
Confidence 4
No 318
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.67 E-value=3.7e+02 Score=32.88 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2772 540 VAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSN 576 (746)
Q Consensus 540 kAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~ 576 (746)
+..-++||-..-.-++.+|.==..|+.|.+-|+.-.+
T Consensus 728 k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~~d 764 (769)
T PF05911_consen 728 KIKQEKEIAAAAEKLAECQETIASLGKQLKSLATPED 764 (769)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3444789999999999999999999999988875443
No 319
>KOG4572|consensus
Probab=39.54 E-value=3.6e+02 Score=33.80 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQA 552 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQd 552 (746)
..+.|-+.+|-+..--|.++-..+||+|..-++...||.++.|.+.+=-.-..- +.++.++..++|+.|+--|+.
T Consensus 992 a~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~ef-----ka~d~Sd~r~kie~efAa~ea 1066 (1424)
T KOG4572|consen 992 AFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEF-----KALDESDPRAKIEDEFAAIEA 1066 (1424)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHh-----hhccccCcchhHHHHHHHHHh
Confidence 456677788888889999999999999999999999999999988652211221 234567777777766655554
Q ss_pred HHHH------HHHHHHHH------HHHHHHHhhhcccccccccCCCccc
Q psy2772 553 LVGD------LQRQRQEL------SAQVKQLTEKSNSLSQQIRPGPTGV 589 (746)
Q Consensus 553 Vvgg------LsrQRqeL------s~qVrqLt~~s~~l~~qi~~~~~~~ 589 (746)
-|.. +.+.+|-+ -.-..+|+..-..|.+.|...|.|-
T Consensus 1067 emdeik~~~~edrakqkei~k~L~ehelenLrnEieklndkIkdnne~~ 1115 (1424)
T KOG4572|consen 1067 EMDEIKDGKCEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEGD 1115 (1424)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 4432 22332221 1223345444455666777666653
No 320
>KOG2629|consensus
Probab=39.30 E-value=1.8e+02 Score=32.00 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=38.2
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 441 SVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 441 q~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkL 520 (746)
.+|.+.-++++++|.-+-.+.- .-.+++..||+-|=++|.++-.-|... -+...+||.|+.-+|+-|
T Consensus 125 ~~Ld~~~~~~~~~~~~l~~~va------~v~q~~~~qq~Els~~L~~l~~~~~~~-------s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 125 RQLDDQFDKAAKSLNALMDEVA------QVSQLLATQQSELSRALASLKNTLVQL-------SRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHH
Confidence 3344444444444444433322 233566777775555555554444422 455567889999999777
Q ss_pred H
Q psy2772 521 Q 521 (746)
Q Consensus 521 Q 521 (746)
-
T Consensus 192 l 192 (300)
T KOG2629|consen 192 L 192 (300)
T ss_pred h
Confidence 6
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.24 E-value=2.2e+02 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=12.7
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHH
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALG 455 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~ 455 (746)
.++++.+++...+.+.+.++.+++.+.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~ 539 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLK 539 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444454444444444444444433
No 322
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.00 E-value=72 Score=30.10 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhHhhhccC
Q psy2772 448 EMLENALGSLRHKMHGVH 465 (746)
Q Consensus 448 D~LEsAL~~L~qqME~~~ 465 (746)
.+||+-|+..++++++|+
T Consensus 28 ~~l~~eL~~~k~el~~yk 45 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYK 45 (128)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 323
>KOG4643|consensus
Probab=38.47 E-value=4.1e+02 Score=33.82 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=36.2
Q ss_pred CcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc
Q psy2772 410 SPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHG 463 (746)
Q Consensus 410 ~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~ 463 (746)
.--|.+.||.|.=.+|.. ++++-=++|.++|+.||.-|..++.|=++
T Consensus 250 ~~ykerlmDs~fykdRve-------elkedN~vLleekeMLeeQLq~lrarse~ 296 (1195)
T KOG4643|consen 250 TTYKERLMDSDFYKDRVE-------ELKEDNRVLLEEKEMLEEQLQKLRARSEG 296 (1195)
T ss_pred CccchhhhhhHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 344667888877777754 45666788999999999999999988766
No 324
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=38.24 E-value=1.6e+02 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
.+++++..++..++..+..++..|+.-.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655555555433
No 325
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=38.19 E-value=7.5e+02 Score=29.36 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=3.0
Q ss_pred HHHHHHh
Q psy2772 201 YIRYVSA 207 (746)
Q Consensus 201 ~~~~~~~ 207 (746)
|+.+|.+
T Consensus 197 ~l~~v~~ 203 (594)
T PF05667_consen 197 YLPPVTA 203 (594)
T ss_pred hCCCccc
Confidence 4444443
No 326
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=38.17 E-value=3.1e+02 Score=24.86 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
.-|+.++.++...-++.-.+|.++=+.-.+||.--.-+...|-.-+.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888777777777765554
No 327
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.16 E-value=2.8e+02 Score=34.47 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCc-----chHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGP-----SVAA 542 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~q-----ekAq 542 (746)
|+++|.+..-+. ++|-..|+++++++..-..|-++.++|....|.-... . |.--..| -..|
T Consensus 552 ae~lE~~~~e~e----------al~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~--A--P~Wl~Aq~ALe~L~eQ 617 (1480)
T COG3096 552 AEELEALHQELE----------ALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQR--A--PVWLAAQNALEQLSEQ 617 (1480)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c--cHHHHHHHHHHHHHHh
Confidence 666655544433 3455567889999999999999999888888744321 1 0000000 0111
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccccccccc
Q psy2772 543 LEAELRRVQALVGDLQRQ---RQELSAQVKQLTEKSNSLSQQIR 583 (746)
Q Consensus 543 LekELwRIQdVvggLsrQ---RqeLs~qVrqLt~~s~~l~~qi~ 583 (746)
--.++-.-||||+-||.+ -.|+..+-++|.++-..|..||.
T Consensus 618 SGe~~~dSq~V~~~MQ~~L~~Ere~t~~rD~l~~~r~~ld~qI~ 661 (1480)
T COG3096 618 SGEEFTDSQDVTEYMQQLLEREREATVERDELGARKNALDEEIE 661 (1480)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124677788999988865 23555556666666666666653
No 328
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.88 E-value=4.6e+02 Score=26.81 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHG 463 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~ 463 (746)
..+.+++.+...++.+ +.++|+..|..+.+.+..
T Consensus 131 ~l~~ll~~~~~ll~~~--~~~~l~~~l~~l~~~l~~ 164 (291)
T TIGR00996 131 EIDDLLGSLTRLLNGL--DPEKLNAILNALAEALAG 164 (291)
T ss_pred cHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhCC
Confidence 3466666666666665 345688888777776653
No 329
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.60 E-value=1.3e+02 Score=33.15 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=21.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVH 465 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~ 465 (746)
.++..+++.|+++...+..-|..+++.|....
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556667777777777777777777655544
No 330
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.55 E-value=85 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHG 463 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~ 463 (746)
.+.+++.+|..|+.+++.|+.-+..++.+++.
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777666666555443
No 331
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.54 E-value=4e+02 Score=31.58 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=38.8
Q ss_pred ecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHH
Q psy2772 416 IGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRR 476 (746)
Q Consensus 416 e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~ 476 (746)
++.....|...|+.|--+ ++.+..|.+--..||.|...+++-|+...-+|..++++..
T Consensus 247 l~~a~~~l~~~~~~d~~l---~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~ 304 (557)
T COG0497 247 LGRALEALEDLSEYDGKL---SELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEE 304 (557)
T ss_pred HHHHHHHHHHhhccChhH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 344455555566666533 3344445555667888888888888888888988887754
No 332
>KOG0018|consensus
Probab=37.42 E-value=2e+02 Score=36.44 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=76.3
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 417 GVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 417 ~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
.|.+-++.|.. +-+++++.-+-.|+.+.+.+++.++.. .+|+. ++ ..-=+..+.|+..++-.+.+..
T Consensus 803 ~d~~~~ve~~~---~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~--------k~~~~~~~~e~~e~~k~~~~~~ 869 (1141)
T KOG0018|consen 803 KDTQRRVERWE---RSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN--------KSKFEKKEDEINEVKKILRRLV 869 (1141)
T ss_pred ccHHHHHHHHH---HHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777754 557888888899999999999999998 88888 32 2223457889999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
++|.+.=.+...+|.+++.+...-+.=+
T Consensus 870 ~~~tkl~~~i~~~es~ie~~~~er~~lL 897 (1141)
T KOG0018|consen 870 KELTKLDKEITSIESKIERKESERHNLL 897 (1141)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999988876655544
No 333
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.42 E-value=5.6e+02 Score=27.69 Aligned_cols=37 Identities=8% Similarity=-0.112 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 422 AISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 422 klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
.-+.-|+.+.++..+-..+..+..++ ++.+|..+.+-
T Consensus 134 ~t~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~ 170 (359)
T COG1463 134 RTQVPIDLEDLLGDLLLLLGGLDPDR--LNAILNEAAAA 170 (359)
T ss_pred CCcCcccHHHHHHHHHHHhccCCchh--hHHHHHHHHHH
Confidence 55556666666666655555544432 33444333333
No 334
>KOG0980|consensus
Probab=36.96 E-value=9.5e+02 Score=30.38 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=13.4
Q ss_pred Ccccchhhhhhhhhhhhh
Q psy2772 284 NFGGKELRLKQEYFMCAA 301 (746)
Q Consensus 284 t~eGKeLRLKQQYFfVSA 301 (746)
-|.+.-.||||.|-=||+
T Consensus 227 Rf~~qf~rLk~FY~~~S~ 244 (980)
T KOG0980|consen 227 RFHTQFERLKQFYADCSN 244 (980)
T ss_pred HHHHHHHHHHHHHHhcch
Confidence 356677888988877775
No 335
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=36.83 E-value=2e+02 Score=32.90 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 498 KLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 498 ELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
.||+.-.|+.+.|+.|...||||+.-
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da 28 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDA 28 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778888899999999988743
No 336
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=36.73 E-value=1.2e+02 Score=31.87 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 445 ~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
..+..+|..+..+.+.++.|..-..+.+.|+.|-.-|+.++...|=.|.+.+
T Consensus 185 ~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie~k~Wal~e~~ 236 (238)
T PF14735_consen 185 EAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIENKRWALEEFS 236 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444445555667777777777777777777777777776666554
No 337
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=36.71 E-value=45 Score=31.75 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy2772 541 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 541 AqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi 582 (746)
+-|+.+|--..-=-+-|.+||.+|.+++++|.....+.++.|
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~ 60 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRI 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666677788888888888777666665544
No 338
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=36.44 E-value=4.6e+02 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
+++|++-+.+.+.+.++...+...+...+
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~ 178 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVK 178 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666555543
No 339
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.26 E-value=5.3e+02 Score=27.02 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=16.0
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 491 ILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 491 eLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
+|+++|...-.+......|+.+|...-...+
T Consensus 54 ~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~ 84 (291)
T PF10475_consen 54 EISEKSDSFFQAMSSVQELQDELEEALVICK 84 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544433333
No 340
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.25 E-value=9.1e+02 Score=29.74 Aligned_cols=11 Identities=9% Similarity=-0.191 Sum_probs=4.3
Q ss_pred hhhHHHHHHHH
Q psy2772 300 AATLQVISLPF 310 (746)
Q Consensus 300 SASLQDIIRrf 310 (746)
+.-+.+..+..
T Consensus 182 ~~~~~~~~~~~ 192 (1042)
T TIGR00618 182 ALMEFAKKKSL 192 (1042)
T ss_pred HHHHHHHHHHH
Confidence 33334433333
No 341
>PF14992 TMCO5: TMCO5 family
Probab=35.76 E-value=2.9e+02 Score=30.11 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=57.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH-------hHhh-hcc----CCChHHHHHHHHHHHHHHHHHH
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSL-------RHKM-HGV----HASPAEVERYRRQQRLLERELS 486 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L-------~qqM-E~~----~dqPa~~EKi~~QQrlLE~eLs 486 (746)
+|+-+-|-.+.|.+.-+-+.-++.|..++++||.-=+-+ ..++ ++. .++|+.
T Consensus 44 ~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~---------------- 107 (280)
T PF14992_consen 44 MDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQL---------------- 107 (280)
T ss_pred HccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccch----------------
Confidence 344444445556666666666677777777777633333 1111 111 112221
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy2772 487 RVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQR 561 (746)
Q Consensus 487 rVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQR 561 (746)
+...+-|+ .+|+.+..+.+++|.++.-+-+..+. ..+.+. |....-..++..|.||++=.+-+-=.|
T Consensus 108 ~~~lq~sk--~~lqql~~~~~~qE~ei~kve~d~~~-v~~l~e-----Dq~~~i~klkE~L~rmE~ekE~~lLe~ 174 (280)
T PF14992_consen 108 SQSLQFSK--NKLQQLLESCASQEKEIAKVEDDYQQ-VHQLCE-----DQANEIKKLKEKLRRMEEEKEMLLLEK 174 (280)
T ss_pred hcccHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222 55666666666666666666444332 111111 111244567778888887555444433
No 342
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=35.48 E-value=7e+02 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 475 RRQQRLLERELSRVRSILAHNSKKLEETVAA 505 (746)
Q Consensus 475 ~~QQrlLE~eLsrVRaeLSrnSkELE~twaE 505 (746)
...-+.|.+||.-+|+.-+...+.+..+...
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~ 184 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKD 184 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999888877654
No 343
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.48 E-value=2.7e+02 Score=23.97 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=46.2
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc------------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHG------------VHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~------------~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
.-.=++.+...++.|..++..++.|+..|..--.. ..+-+...+.+..+...|+.++..+...+....
T Consensus 10 l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446677778888888888888887776542111 112355667777777777777766666665555
Q ss_pred HHHHH
Q psy2772 497 KKLEE 501 (746)
Q Consensus 497 kELE~ 501 (746)
++|++
T Consensus 90 ~~l~~ 94 (106)
T PF01920_consen 90 KKLKE 94 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 344
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.27 E-value=3.5e+02 Score=24.65 Aligned_cols=101 Identities=24% Similarity=0.288 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALE 544 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLe 544 (746)
|..++....+-..|+.++..+..+++.. -.|.+.+-.|...|+.+-.+.|.- +..-...+-.-....|+
T Consensus 2 ~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~V--------G~vlv~~~~~e~~~~l~ 73 (110)
T TIGR02338 2 PPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSV--------GNLLVKTDKEEAIQELK 73 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh--------chhhheecHHHHHHHHH
Confidence 3445555555555565555555544443 245555556666665555444421 00000000112334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2772 545 AELRRVQALVGDLQRQRQELSAQVKQLTEKSN 576 (746)
Q Consensus 545 kELwRIQdVvggLsrQRqeLs~qVrqLt~~s~ 576 (746)
+.+.-++..+..|..+...|..++..+..+-.
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777777777766655433
No 345
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=35.11 E-value=6.6e+02 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSR 487 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsr 487 (746)
.+.+..|+..++.+...
T Consensus 142 ~~~~~~q~~~~~~~~~~ 158 (457)
T TIGR01000 142 FNGYLAQVESLTSETQQ 158 (457)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444455555554443
No 346
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=35.08 E-value=9.5e+02 Score=29.62 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSL 457 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L 457 (746)
+++..|++|+++-|.|-.=|.-+
T Consensus 475 dL~~ELqqLReERdRl~aeLqlS 497 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLS 497 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888999999999988877743
No 347
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=34.78 E-value=3.4e+02 Score=33.59 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSA 566 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~ 566 (746)
+-.|=.+|+.|..++.-+||.--..|..
T Consensus 530 tlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 530 TLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334578999999999999976555444
No 348
>KOG0742|consensus
Probab=34.66 E-value=3.8e+02 Score=31.57 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=38.2
Q ss_pred hhhhhhhhhhhh--------------hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChH--HHHHHHHHHHHHHHHH
Q psy2772 422 AISRDQIASKLH--------------SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPA--EVERYRRQQRLLEREL 485 (746)
Q Consensus 422 klSr~ce~dKil--------------qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa--~~EKi~~QQrlLE~eL 485 (746)
-|.|++|+-+.. |.-.++++.+.+|.-+|-.-=...++++-.|.|+-+ ..+.=-.+|+.+.+||
T Consensus 99 el~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~larkr~~~e~e~qr~~n~El 178 (630)
T KOG0742|consen 99 ELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDKLARKRYEDELEAQRRLNEEL 178 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 366777765542 122344555556665555555566677777777632 3344445667777777
Q ss_pred HH
Q psy2772 486 SR 487 (746)
Q Consensus 486 sr 487 (746)
++
T Consensus 179 vr 180 (630)
T KOG0742|consen 179 VR 180 (630)
T ss_pred HH
Confidence 65
No 349
>KOG0243|consensus
Probab=34.52 E-value=7.5e+02 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
+......|+..|.....+|+..=+|+.++.+. .++|.++....-++.
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~-l~~~e~ii~~~~~se 527 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKAT-LKEEEEIISQQEKSE 527 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34445566666666666666666666665555 344444444333333
No 350
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.49 E-value=2.8e+02 Score=33.37 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHh
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLR 458 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~ 458 (746)
..++++.+++...+.+++.++.+|+.+.-+.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~ 547 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAE 547 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666554433
No 351
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=34.47 E-value=5.9e+02 Score=28.53 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=34.4
Q ss_pred hhhhhhhhhhhh--hhHHHHHHHHHHHhHhhhc--cCCChHHHHHHHHHHHHHHHHH
Q psy2772 433 HSRGRNICSVQG--QAKEMLENALGSLRHKMHG--VHASPAEVERYRRQQRLLEREL 485 (746)
Q Consensus 433 lqelE~kLq~Lk--~DKD~LEsAL~~L~qqME~--~~dqPa~~EKi~~QQrlLE~eL 485 (746)
+.++..+++.|. -+-+.++.-+..|.++|.. .+++|....++.++-..|+.-+
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v 65 (364)
T TIGR00020 9 IEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVL 65 (364)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHH
Confidence 555666666665 3556666667777777754 4578888888776665555443
No 352
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=34.40 E-value=6.1e+02 Score=27.23 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
.|..++.+.|.-|.+.++-=...+..+..-+..+..|..-+.+ +.+........+.. ..+..+++++.++..|..
T Consensus 128 ~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~-l~~~iPs~~~~~~~----~~~~~v~~Lr~ll~kl~~ 202 (337)
T cd09234 128 ELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDE-LQKKLPSPSLLDRP----EDEAIEKELKRILNKVNE 202 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH-HHhhCCCccccCCc----ccHHHHHHHHHHHHHHHH
Confidence 4667777777777776643333333333344455555433221 11100000011111 234456666666665554
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy2772 560 QRQELSAQVKQLTEKSN 576 (746)
Q Consensus 560 QRqeLs~qVrqLt~~s~ 576 (746)
-+.+=..-+.+|.++++
T Consensus 203 lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 203 MRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44444444444544433
No 353
>KOG4593|consensus
Probab=34.21 E-value=5.4e+02 Score=31.48 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCC---CC-------CcchHHHHHHHHHHHHHHHHHH
Q psy2772 489 RSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASL---SN-------GPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 489 RaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~---~~-------~qekAqLekELwRIQdVvggLs 558 (746)
+.-+....++++..=.||.||+ -...++.||.-.+....-...+ ++ -....+|++|+.|+...+.+|.
T Consensus 502 ~e~i~~~~ke~~~Le~En~rLr--~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le 579 (716)
T KOG4593|consen 502 REKIEQYLKELELLEEENDRLR--AQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALE 579 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666666666666666 3445555654332211100000 11 0334578999999999777776
Q ss_pred HH---HHHHHHHHHHHh
Q psy2772 559 RQ---RQELSAQVKQLT 572 (746)
Q Consensus 559 rQ---RqeLs~qVrqLt 572 (746)
.. +.....+|+-++
T Consensus 580 ~~~~~~~d~~i~~~s~~ 596 (716)
T KOG4593|consen 580 GDKMQFRDGEIAVHSLL 596 (716)
T ss_pred ccCCcccchhhHHhhhh
Confidence 53 344444444433
No 354
>KOG0979|consensus
Probab=34.01 E-value=3.6e+02 Score=34.14 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2772 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKS 575 (746)
Q Consensus 539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s 575 (746)
+..-.+....||+.++..|.+|+.|+...+.++-...
T Consensus 686 ~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~~ 722 (1072)
T KOG0979|consen 686 ELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILDT 722 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5666888899999999999999999999998876443
No 355
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=33.83 E-value=3.9e+02 Score=29.29 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=9.5
Q ss_pred HhhhHHHHHHHHHHhhhHHHHHH
Q psy2772 493 AHNSKKLEETVAANARLESELVV 515 (746)
Q Consensus 493 SrnSkELE~twaEyaRLE~EV~~ 515 (746)
+.++.++.++..+.++.|..|.+
T Consensus 130 ~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 130 ADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 356
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=33.66 E-value=1.5e+02 Score=32.03 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=24.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
|-+++.|+.|+..++.|++|-.-+..|+++
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I~kLk~k 160 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEIAKLKYK 160 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHhc
Confidence 667888888899999998888888777654
No 357
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=33.35 E-value=6.9e+02 Score=27.46 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 499 LEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 499 LE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
.-+-.++-.++|++-..-+..|..+.
T Consensus 81 ~~~r~~~~~~i~~~~~~q~~~l~~~~ 106 (332)
T TIGR01541 81 QRERLDARLQIDRTFRKQQRDLNKAM 106 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444555444444444443
No 358
>KOG0978|consensus
Probab=33.10 E-value=9.9e+02 Score=29.26 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Q psy2772 31 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 67 (746)
Q Consensus 31 a~LeseL~Rvq~lVGD~QrQR~eLs~~VrQLTe~s~~ 67 (746)
..|..|-++.|.++-++|+-=++++.+..-|+++-..
T Consensus 51 ~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~ 87 (698)
T KOG0978|consen 51 DELAEENEKLQNLADHLQEKHATLSEQISELLDKIST 87 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999887543
No 359
>KOG4571|consensus
Probab=33.02 E-value=4.7e+02 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=21.9
Q ss_pred ccccccccccccCCCCcceeeecchhhhhhhhhh
Q psy2772 395 PWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQI 428 (746)
Q Consensus 395 kWpv~~~l~irvrp~~p~ri~e~d~d~klSr~ce 428 (746)
-|..+.+++=-+-...|+.-.-+++=..|.+.|+
T Consensus 143 ~~~~s~~~~~e~~~~~~~~~~~s~~l~~i~~~C~ 176 (294)
T KOG4571|consen 143 DPFCSLELVHERCSMEPNQQEKSTILEEIVRECE 176 (294)
T ss_pred CcccccCCCccccccccccchhhHHHHHHHHHHH
Confidence 3555555544444556666666777777888887
No 360
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=33.01 E-value=5.4e+02 Score=26.17 Aligned_cols=87 Identities=24% Similarity=0.335 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH---HHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ---KLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRq---kLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg 555 (746)
..|..+|.+.+.-|.+.+.-=.....-+...+..+..|-. .|.+.+-.... ... ......-++|...-.-+.
T Consensus 80 ~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~----~~~-~~~~~~i~~L~~ll~~l~ 154 (296)
T PF13949_consen 80 ASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSP----SDS-PQVSEVIRQLRELLNKLE 154 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-------SS-GSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCc----ccc-cchhHHHHHHHHHHHHHH
Confidence 3566667777776666665555555555555555555533 34444422110 011 222444556666666667
Q ss_pred HHHHHHHHHHHHHHH
Q psy2772 556 DLQRQRQELSAQVKQ 570 (746)
Q Consensus 556 gLsrQRqeLs~qVrq 570 (746)
.|..+|+.+-.+++.
T Consensus 155 ~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 155 ELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 778888888888877
No 361
>PRK14136 recX recombination regulator RecX; Provisional
Probab=32.88 E-value=2.7e+02 Score=30.76 Aligned_cols=101 Identities=13% Similarity=0.016 Sum_probs=75.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN--S 496 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn--S 496 (746)
...+|.-+.-.++--.|+..||+...-+.+.+|.||+-|.. +.|-|+-...+.+...+. -...-.+|+.+|.+- +
T Consensus 165 k~kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke--~gYLDDeRFAesyVr~R~-~kkGp~rIrqELrQKGId 241 (309)
T PRK14136 165 KGRALGYLSRREYSRAELARKLAPYADESDSVEPLLDALER--EGWLSDARFAESLVHRRA-SRVGSARIVSELKRHAVG 241 (309)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCcCHHHHHHHHHHHHh-hchhHHHHHHHHHHcCCC
Confidence 34566666678888899999999988899999999999987 466677788888875532 235788899999875 4
Q ss_pred H-HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 497 K-KLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 497 k-ELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
. -+|++++++. |.+++.+++.++...
T Consensus 242 ~eLIEqALeeie--EDE~E~A~~L~eKK~ 268 (309)
T PRK14136 242 DALVESVGAQLR--ETEFERAQAVWRKKF 268 (309)
T ss_pred HHHHHHHHHhcc--HhHHHHHHHHHHHHh
Confidence 4 4577777773 566777777776444
No 362
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=32.74 E-value=3.1e+02 Score=23.23 Aligned_cols=63 Identities=25% Similarity=0.308 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 499 LE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrq 570 (746)
+++...+...+.+++..+|..|.+.+.. .......++.-+.+|.++...|.+.|.+.-..++.
T Consensus 54 ~~~~~~~~~~~r~~~~~~r~~l~~ll~~---------~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~ 116 (125)
T PF13801_consen 54 MDEFRQEMRALRQELRAARQELRALLAA---------PPPDEAAIEALLEEIREAQAELRQERLEHLLEIRA 116 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC---------SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556667777788888877742 22355679999999999999999999888777765
No 363
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=32.68 E-value=1.9e+02 Score=30.91 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=42.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhHHHHHHH
Q psy2772 438 NICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS-KKLEETVAANARLESELVVL 516 (746)
Q Consensus 438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS-kELE~twaEyaRLE~EV~~L 516 (746)
.+|..|..+|+.+-+++...+++++ .++.+.+ .++|++=.+|..+=++++..
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~---------------------------~e~~~~t~~eveK~Kk~Y~~~c~~~e~A 150 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLK---------------------------QEYTKTTQQDIEKLKSQYRSLAKDSAQA 150 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666554 3334555 47888888888888888888
Q ss_pred HHHHHHH
Q psy2772 517 RQKLQWS 523 (746)
Q Consensus 517 RqkLQaQ 523 (746)
|++.+++
T Consensus 151 R~K~eka 157 (237)
T cd07685 151 KRKYQEA 157 (237)
T ss_pred HHHHHhc
Confidence 8888864
No 364
>KOG0946|consensus
Probab=32.67 E-value=7.8e+02 Score=30.96 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKL 520 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkL 520 (746)
++|-.+--||.+|+++...|-..|
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667778888887766665555
No 365
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=32.64 E-value=3.2e+02 Score=28.62 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNS-----KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnS-----kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
-.++-++...++.+|.+.|..+++.. -|+-++=.|+..+|+.|.+.+..-+
T Consensus 128 R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe 183 (234)
T cd07665 128 RMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFE 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999877763 4888888999999999998888655
No 366
>PRK10869 recombination and repair protein; Provisional
Probab=32.51 E-value=3.5e+02 Score=31.22 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=21.6
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQ 445 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~ 445 (746)
...++.|+.-..||++.+...++.|..
T Consensus 210 L~~e~~~L~n~e~i~~~~~~~~~~L~~ 236 (553)
T PRK10869 210 IDEEYKRLANSGQLLTTSQNALQLLAD 236 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567778888888888888888888854
No 367
>PLN02678 seryl-tRNA synthetase
Probab=32.33 E-value=2.9e+02 Score=31.47 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------------HHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKL-----------------EETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkEL-----------------E~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
..++-++-.+.+.|+.++-..|++...+||++ -+...+...||.++..+.++|.+-+..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666666666666666666544 334567777888888888888876644
No 368
>KOG1760|consensus
Probab=32.26 E-value=53 Score=32.25 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=39.9
Q ss_pred cceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHH
Q psy2772 411 PIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQ 478 (746)
Q Consensus 411 p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQ 478 (746)
+|+..+|||=+-.++ +...-+|.+.|+.|++.++++..+++.....-+++-++-|+.
T Consensus 65 ~Ip~~vGdvF~~~~~-----------~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 65 DIPFKVGDVFIHVKL-----------DKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAK 121 (131)
T ss_pred ccceehhhhheeccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666543332 223345788899999999999999888887777777777764
No 369
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.22 E-value=4.4e+02 Score=31.24 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=83.6
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhHH--HHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772 421 HAISRDQIASKLHSRGRNICSVQGQAKE--MLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKK 498 (746)
Q Consensus 421 ~klSr~ce~dKilqelE~kLq~Lk~DKD--~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkE 498 (746)
-...|++..+||.+....-++.|..|-| .+-..|....+.++...+.+.....+...-..-..+|.-+..+|.+....
T Consensus 212 ~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~ 291 (557)
T COG0497 212 EERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDE 291 (557)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777778888777777777764322 34445555566666545444444444444444444444444444444322
Q ss_pred HH-------HH----------HHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHH----HHHHH
Q psy2772 499 LE-------ET----------VAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQA----LVGDL 557 (746)
Q Consensus 499 LE-------~t----------waEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQd----VvggL 557 (746)
+| +. -+.|..-=.+|...++++++++..-.+ ......+|++++.+.+. .-..|
T Consensus 292 le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~------~~~~~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 292 LEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDN------SEESLEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 21 122222223666777788888764322 22346678888877654 44678
Q ss_pred HHHHHHHHHHHHH-Hhhhccccc
Q psy2772 558 QRQRQELSAQVKQ-LTEKSNSLS 579 (746)
Q Consensus 558 srQRqeLs~qVrq-Lt~~s~~l~ 579 (746)
++.|+..+..... +++.-+.|+
T Consensus 366 s~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 366 SAIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888876665543 333334444
No 370
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.01 E-value=6.1e+02 Score=26.48 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 536 NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 536 ~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
...++..|+.++...+..+..|...++....-+.+|.
T Consensus 73 ~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 73 QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888877776665555555
No 371
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.89 E-value=8.2e+02 Score=27.93 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHH
Q psy2772 449 MLENALGSLRHKMHGVHASPAEVERYRRQQRLLERE 484 (746)
Q Consensus 449 ~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~e 484 (746)
.|..-|.-+...+.....+ +......+..++|+.+
T Consensus 159 sL~ekl~lld~al~~~~~~-~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 159 SLQEKLSLLDEALKREDGN-AITAVVEFLKRTLKKE 193 (511)
T ss_pred hHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHH
Confidence 3444444555555555544 2333344555555554
No 372
>KOG1937|consensus
Probab=31.53 E-value=8.4e+02 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhccccccc
Q psy2772 542 ALEAELRRVQALVGDLQRQRQELSA---QVKQLTEKSNSLSQQ 581 (746)
Q Consensus 542 qLekELwRIQdVvggLsrQRqeLs~---qVrqLt~~s~~l~~q 581 (746)
+...=..||..++|-..+|+++.-. --|+|.-.-|+++.+
T Consensus 383 ~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~ 425 (521)
T KOG1937|consen 383 QRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEA 425 (521)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456777777777777776532 234444444444433
No 373
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.49 E-value=6.9e+02 Score=29.58 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504 (746)
Q Consensus 425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa 504 (746)
|....|-..++.....+++++-..+++.-|..|..++.. ...||..||.-+ ++|+++-.+---+=+
T Consensus 358 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~----------~~~~~~~L~~~~----~~l~~~r~dW~laEa 423 (656)
T PRK06975 358 RQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLAD----------AQSAQQALEQQY----QDLSRNRDDWMIAEV 423 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH----HHHhcChhhhHHHHH
Q ss_pred HH--------hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy2772 505 AN--------ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQAL----VGDLQRQRQELSAQVKQL 571 (746)
Q Consensus 505 Ey--------aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdV----vggLsrQRqeLs~qVrqL 571 (746)
|| ..||++|.-....|+.= +.+=.....-........|-+|+-+++.+ +.||--+=..|.++|++|
T Consensus 424 e~Ll~lA~q~L~l~~dv~~A~~~L~~A-D~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~L 501 (656)
T PRK06975 424 EQMLSSASQQLQLTGNVQLALIALQNA-DARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDAL 501 (656)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhC
No 374
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=31.41 E-value=4.3e+02 Score=24.64 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhc-------cCCChHHH--------------HHHHHHHHHHHHHHHHHH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHG-------VHASPAEV--------------ERYRRQQRLLERELSRVR 489 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~-------~~dqPa~~--------------EKi~~QQrlLE~eLsrVR 489 (746)
.++..++.-+..+++.-+.|++.+..++.+.++ |-.||-.. +++.++. .-++.+..+.
T Consensus 15 ~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~-~~~~~~~~~~ 93 (134)
T PF08336_consen 15 ELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQP-VGQEQLQNLQ 93 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHh-hhHHHHHHHH
Confidence 445555555555555555555655555555444 44566543 3344433 2333555555
Q ss_pred HHHHhh--hHHHHHHHHHHhhhH
Q psy2772 490 SILAHN--SKKLEETVAANARLE 510 (746)
Q Consensus 490 aeLSrn--SkELE~twaEyaRLE 510 (746)
...... ...|+.|.....||+
T Consensus 94 ~~~~~~Pt~~Dl~gA~~~l~RLQ 116 (134)
T PF08336_consen 94 ELRSKLPTEEDLEGAAEGLLRLQ 116 (134)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 555443 466777766666664
No 375
>KOG3595|consensus
Probab=31.31 E-value=2.1e+02 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy2772 545 AELRRVQALVGDLQRQRQELSAQVKQLTEKSNSL 578 (746)
Q Consensus 545 kELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l 578 (746)
..+.|+..++.+|+.-+.....+.++++..-..|
T Consensus 990 ~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l 1023 (1395)
T KOG3595|consen 990 LKLLRAEELIQGLSGEKERWSETSEQFSKQYSRL 1023 (1395)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhh
Confidence 3444555666666666666666666666444333
No 376
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.27 E-value=4.5e+02 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhcccccccccCC
Q psy2772 561 RQELSAQVKQLTEKSNSLSQQIRPG 585 (746)
Q Consensus 561 RqeLs~qVrqLt~~s~~l~~qi~~~ 585 (746)
+..|..++.+.-+.|..|.++.-.|
T Consensus 98 ~~~L~~~~~e~eeeSe~lae~fl~g 122 (150)
T PF07200_consen 98 LARLQAAASEAEEESEELAEEFLDG 122 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHC-S-SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456666666666676666555443
No 377
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.19 E-value=2e+02 Score=29.34 Aligned_cols=21 Identities=14% Similarity=-0.092 Sum_probs=11.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALG 455 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~ 455 (746)
|++.+|..|+...+.|...|.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 378
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.16 E-value=4.7e+02 Score=25.01 Aligned_cols=49 Identities=27% Similarity=0.219 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQK 519 (746)
Q Consensus 471 ~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqk 519 (746)
.+++-...+-||+.|.-..-.|+-.-+|+++..+.|.+-+..+..|+.+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~ 70 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKN 70 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554444443333333333333333333333333333333
No 379
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.12 E-value=2.5e+02 Score=34.02 Aligned_cols=54 Identities=13% Similarity=0.002 Sum_probs=26.7
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSr 494 (746)
.+.+++.++..|+.+++.|+.- +....-...++++.+...+|+++...+.++..
T Consensus 411 ~L~rLer~l~~L~~E~e~l~~e---------~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~ 464 (857)
T PRK10865 411 ELDRLDRRIIQLKLEQQALMKE---------SDEASKKRLDMLNEELSDKERQYSELEEEWKA 464 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666677777666665431 10001122344555555555555544444443
No 380
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=31.11 E-value=5.3e+02 Score=25.52 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP----AEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP----a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw 503 (746)
...+-+++.|..++.|++..|.+. --.+.|+.....| +.-+.++.++..++.-+..+-..-..+..+|.+++
T Consensus 13 ~l~~~vq~~e~~~k~Le~~QE~f~----~~~q~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~R~~lv~~l~~~~ 88 (182)
T PF01017_consen 13 DLRNRVQETENDIKSLEDLQEEFD----FQYQTLQQLQETEQNSNALKEQLKQEQQQLQQMLNELDQKRKELVSKLKETL 88 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCTTTTT--STTTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555443332 2223344443332 22233555566666644444444444455677777
Q ss_pred HHHhhhHHHHHH
Q psy2772 504 AANARLESELVV 515 (746)
Q Consensus 504 aEyaRLE~EV~~ 515 (746)
..+..|-.+|..
T Consensus 89 ~~~~~lq~~ll~ 100 (182)
T PF01017_consen 89 NCLEQLQSQLLD 100 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776655543
No 381
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.03 E-value=4.4e+02 Score=24.53 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=10.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Q psy2772 435 RGRNICSVQGQAKEMLENALGSL 457 (746)
Q Consensus 435 elE~kLq~Lk~DKD~LEsAL~~L 457 (746)
.+...+..|......++.+++.+
T Consensus 24 ~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 24 ALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 382
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=30.90 E-value=2e+02 Score=31.21 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQK 519 (746)
Q Consensus 470 ~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqk 519 (746)
.+..+.+|-..||-+|----..-...-..+++|..=.+.|..+++.|+.+
T Consensus 17 ~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk 66 (277)
T PF15030_consen 17 RVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKK 66 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777876654322222222345566666666666666655443
No 383
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=30.86 E-value=3.5e+02 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMH 462 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME 462 (746)
+...+..|+...+.++.++..+...+.
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~ 31 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQ 31 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444445555444444433
No 384
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=30.85 E-value=5e+02 Score=25.08 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQA 552 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQd 552 (746)
...++...|+.+.-.++.......+.++..-.....|+.....|+. .. ...+++|+--.=-
T Consensus 31 ~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~----E~---------------~~~~q~EldDLL~ 91 (136)
T PF04871_consen 31 SLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKE----EA---------------RKEAQSELDDLLV 91 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---------------HHhhhhhHHHHHH
Confidence 3444444555555555555555555566655555555554444432 11 1237889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy2772 553 LVGDLQRQRQELSAQVKQLTE 573 (746)
Q Consensus 553 VvggLsrQRqeLs~qVrqLt~ 573 (746)
|+++|...+..+...++.|.+
T Consensus 92 ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 92 LLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HHHhHHHHHHHHHHHHHHcCC
Confidence 999999999999998888764
No 385
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=30.85 E-value=4.4e+02 Score=27.79 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=64.6
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHA--SPAEVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAA 505 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~d--qPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaE 505 (746)
-+-...=..|..|..+|..+-+.....+++|+.-.. .-..++|....=+.+..+....|.-..... ++-+++=+-
T Consensus 87 ~l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k 166 (234)
T cd07686 87 ELNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARER 166 (234)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 344444466778888889999999999988887663 345677777777777777777777665542 355667777
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q psy2772 506 NARLESELVVLRQKLQWSR 524 (746)
Q Consensus 506 yaRLE~EV~~LRqkLQaQr 524 (746)
|.+-+.++...|+.---..
T Consensus 167 ~~~~~~km~~~kN~Yll~i 185 (234)
T cd07686 167 YDKATMKLHMLHNQYVLAV 185 (234)
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 7777777777765544443
No 386
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=30.74 E-value=6e+02 Score=26.00 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=10.4
Q ss_pred HHHhhhcccccccccCCCcc
Q psy2772 569 KQLTEKSNSLSQQIRPGPTG 588 (746)
Q Consensus 569 rqLt~~s~~l~~qi~~~~~~ 588 (746)
+.|+.+++.|.+-+..-|+.
T Consensus 269 ~~l~~~~~~l~~~l~~~p~~ 288 (291)
T TIGR00996 269 TLLVDYHPELEQLLHLLPTY 288 (291)
T ss_pred HHHHhcchhHHHHHHhcchh
Confidence 44445666665555544543
No 387
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.65 E-value=9e+02 Score=28.01 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q psy2772 485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529 (746)
Q Consensus 485 LsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~ 529 (746)
|..-..+|.+-.++|++--++..+++.++..+++..+..+++.++
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444445566666667777777777777777777777777765444
No 388
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=30.60 E-value=3.7e+02 Score=26.25 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=58.1
Q ss_pred cceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 411 PIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRS 490 (746)
Q Consensus 411 p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRa 490 (746)
|++-+...++.-...+-..++++.+++.-.+.|..-|+.++++...-.. .+..++.+..+-..+++-....+.
T Consensus 112 ~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~-------~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 112 PLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKN-------RQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh-------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666667777777777777777777777766544221 234444444444444444445555
Q ss_pred HHHhhhHHHHHHHHHHhhhHHH-HHHHHHHHHH
Q psy2772 491 ILAHNSKKLEETVAANARLESE-LVVLRQKLQW 522 (746)
Q Consensus 491 eLSrnSkELE~twaEyaRLE~E-V~~LRqkLQa 522 (746)
.+...|+. ...|..|.+.+ +.-+|..|..
T Consensus 185 ~~~~is~~---~k~E~~rf~~~k~~d~k~~l~~ 214 (236)
T PF09325_consen 185 EFEEISEN---IKKELERFEKEKVKDFKSMLEE 214 (236)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555433 45566666654 3445666653
No 389
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.58 E-value=2.2e+02 Score=25.85 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=7.3
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q psy2772 438 NICSVQGQAKEMLENALGS 456 (746)
Q Consensus 438 ~kLq~Lk~DKD~LEsAL~~ 456 (746)
..++.|......++.++..
T Consensus 20 ~~i~~l~~~i~e~~~~~~~ 38 (126)
T TIGR00293 20 AQIAALRALIAELETAIET 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 390
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=30.57 E-value=8.4e+02 Score=30.00 Aligned_cols=125 Identities=25% Similarity=0.298 Sum_probs=75.7
Q ss_pred hhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 443 QGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQR----LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ 518 (746)
Q Consensus 443 Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQr----lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRq 518 (746)
...-|-.||.=|..+.+++........++-+...-+. -|.+...++-+++......||-+-.||+-|-.||.+|--
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~k 162 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSK 162 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555566665444433333333333332 345555666677777788999999999999999999888
Q ss_pred HHHHHHhhhccCCCCCC--------CCcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy2772 519 KLQWSRREVCNGTASLS--------NGPSVAALEAELRRVQALV-------GDLQRQRQELSAQ 567 (746)
Q Consensus 519 kLQaQr~~~~~~~~~~~--------~~qekAqLekELwRIQdVv-------ggLsrQRqeLs~q 567 (746)
.|...-..+-....+++ +..--+-||.|-.|...+| ++|.+-|.|....
T Consensus 163 eleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 163 ELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 88743322211111112 2245567888888888887 6777777665443
No 391
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.48 E-value=1.6e+02 Score=27.14 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHH
Q psy2772 427 QIASKLHSRGRNICSVQ--GQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLL 481 (746)
Q Consensus 427 ce~dKilqelE~kLq~L--k~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlL 481 (746)
...|+=|+.+|.++.+| ++|-++|+-.+..++-+|..-. +.++.+.+|.++|
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~---~~l~~v~~~~~lL 98 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS---ARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence 33455555566666666 5565566555555554443333 2344444444443
No 392
>KOG3156|consensus
Probab=30.42 E-value=4.6e+02 Score=27.98 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=69.6
Q ss_pred ecccCCCCc-eEEEecCCCCccchhhhhhhhccccCcccccceeEEEEEeeeccccccccccccccccccccccCCCCcc
Q psy2772 334 RHTKHMPSP-AIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPI 412 (746)
Q Consensus 334 Ihi~~fp~k-vaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt~aYTNHTILpEALEkWpv~~~l~irvrp~~p~ 412 (746)
+++...+.. =.-+.+||| -|.|.|- ..|++=+.|. .|+=+-| +++-++|+.
T Consensus 30 r~~~~~~~~~~r~~~~dt~------alvr~LE-~~Gf~~kQAE--TIt~aiT--~v~ndsl~~----------------- 81 (220)
T KOG3156|consen 30 RQSSQLSGFGRRKFPFDTH------ALVRSLE-AAGFDSKQAE--TITSAIT--TVLNDSLET----------------- 81 (220)
T ss_pred ehhhhcCcccccccchhHH------HHHHHHH-HcCCChhhHH--HHHHHHH--HHHcccHHH-----------------
Confidence 334433333 334556777 3677774 6788888882 2331111 233333332
Q ss_pred eeeecchhhhhhhhh-hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 413 RIRIGVMIHAISRDQ-IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSI 491 (746)
Q Consensus 413 ri~e~d~d~klSr~c-e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRae 491 (746)
..|..... ++++++.-+..-+..++.+-..+|+ .+...++.+-.-|-+||-++|..
T Consensus 82 -------vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~----------------sEF~~lr~e~EklkndlEk~ks~ 138 (220)
T KOG3156|consen 82 -------VSKELVTKAQQEKVSYQQKVDFAKIRSELVSIER----------------SEFANLRAENEKLKNDLEKLKSS 138 (220)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333 4667777777766666666555554 23334444444444444444443
Q ss_pred HH---------------------------hhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 492 LA---------------------------HNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 492 LS---------------------------rnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
|- ++.+.-|.. .+|++||.-||-.|.
T Consensus 139 lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s----~kId~Ev~~lk~qi~ 191 (220)
T KOG3156|consen 139 LRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEIS----TKIDQEVTNLKTQIE 191 (220)
T ss_pred HHHHHHhcchhceeecchhhccccchhhhcchhHhHHH----HHHHHHHHHHHHHHH
Confidence 33 333333333 788899988886554
No 393
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.24 E-value=2.6e+02 Score=25.88 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=39.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHH-----HhHhhhccCCChHHHHHHHH----------HHHHHHH
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGS-----LRHKMHGVHASPAEVERYRR----------QQRLLER 483 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~-----L~qqME~~~dqPa~~EKi~~----------QQrlLE~ 483 (746)
+|-++---+.-|+|+++. |-+.|+..+.. +...-...-.+|..+.-++- .|.-|..
T Consensus 10 iDWr~i~~iDvd~i~~~~---------Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~ 80 (118)
T PF13815_consen 10 IDWRLISAIDVDRIVREL---------DIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSS 80 (118)
T ss_pred CcHHHHhccCHHHHHhcc---------CHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344456666553 44455554442 22222223455665554444 4444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772 484 ELSRVRSILAHNSKKLEETVAANARLESELVVLR 517 (746)
Q Consensus 484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LR 517 (746)
.+......+.....+.++.-..+.+++.++..||
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433
No 394
>KOG0976|consensus
Probab=30.23 E-value=1.1e+03 Score=29.92 Aligned_cols=187 Identities=18% Similarity=0.113 Sum_probs=98.1
Q ss_pred ccccccccccccccccccccccCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhcc
Q psy2772 385 YRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGV 464 (746)
Q Consensus 385 NHTILpEALEkWpv~~~l~irvrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~ 464 (746)
.-+.+.+|+++=.+-.+---+| .+--.||+-.|+-.-=.-.-+...-++.|..+|+.|.-+|-+|-.+..++..++-
T Consensus 61 he~lvdkaglneSviie~sk~v-stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~k-- 137 (1265)
T KOG0976|consen 61 HESLVDKAGLNESVIIEQSKKV-STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKK-- 137 (1265)
T ss_pred HHHHHHHhhccchhhhhhcchh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3456666776666655544332 2344555555543211111122223344445555555555555544444443322
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-
Q psy2772 465 HASPAEVERYRRQQRLLERELSRVRSILAHN------------------SKKLEETVAANARLESELVVLRQKLQWSRR- 525 (746)
Q Consensus 465 ~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn------------------SkELE~twaEyaRLE~EV~~LRqkLQaQr~- 525 (746)
.+-.++|...---+.|+.+|+.-+-+|-.. -++|+++-.+|--||.-+.++|.+|-+--+
T Consensus 138 -e~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~ 216 (1265)
T KOG0976|consen 138 -ENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQK 216 (1265)
T ss_pred -HHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 223344444444555555555555544332 245566666666666666666655432100
Q ss_pred ------------h-----hccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772 526 ------------E-----VCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 526 ------------~-----~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~ 579 (746)
+ +... +..+.-..+.+..-+|+..+.+|+.--.++-.-||||.-+..+|-
T Consensus 217 sle~~~~q~~tq~vl~ev~QLs----s~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~ 283 (1265)
T KOG0976|consen 217 SLELHKDQENTQKVLKEVMQLS----SQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLG 283 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0010 011333445778888999999999999999999999886655554
No 395
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=30.10 E-value=66 Score=35.33 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH----------------HHHHHHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE----------------RYRRQQRLLER 483 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E----------------Ki~~QQrlLE~ 483 (746)
+.+++.++++|+++-+.|+.....+..|+|.+-....+.| |||.||++|..
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~ 205 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLAS 205 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 396
>PRK14127 cell division protein GpsB; Provisional
Probab=30.02 E-value=4.2e+02 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 488 VRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 488 VRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
|-.=|-++.+++|..-.|+.+|+.++..|+.+|.+-..
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888889999999888888875543
No 397
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=30.01 E-value=6.7e+02 Score=28.13 Aligned_cols=78 Identities=10% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHhHhhh--ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCC
Q psy2772 454 LGSLRHKMH--GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGT 531 (746)
Q Consensus 454 L~~L~qqME--~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~ 531 (746)
+..+..+|. .++++|....++.++...|+. .-++|.++..++.++..|+.-+++ .
T Consensus 16 ~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~---------------~v~~~~~~~~~~~~~~~~~el~~~--~------ 72 (360)
T TIGR00019 16 YEELEALLSDPEVISDQDKLRKLSKEYSQLEE---------------IVDCYREYQQAQEDIKEAKEILEE--S------ 72 (360)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhc--c------
Confidence 444444544 567888888877665544433 334566677777777777766643 1
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy2772 532 ASLSNGPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 532 ~~~~~~qekAqLekELwRIQdVvggLs 558 (746)
|. .-..+++.|+..+...+..|.
T Consensus 73 ---D~-e~~~~a~~e~~~l~~~~~~~e 95 (360)
T TIGR00019 73 ---DP-EMREMAKEELEELEEKIEELE 95 (360)
T ss_pred ---CH-HHHHHHHHHHHHHHHHHHHHH
Confidence 11 123455666655555444443
No 398
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.81 E-value=6.6e+02 Score=26.17 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC-C--------ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVH-A--------SPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET 502 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~-d--------qPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t 502 (746)
++.+...+..|+.+.+.+++.+..+.+.+..-- . .-...+....|...++.+|..+++.+...-.+++.+
T Consensus 137 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 215 (301)
T PF14362_consen 137 IARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQ 215 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 344455555666666666666655555422111 1 112344445555666677777766666555555533
No 399
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=29.74 E-value=1e+02 Score=30.47 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHhHhhh
Q psy2772 444 GQAKEMLENALGSLRHKMH 462 (746)
Q Consensus 444 k~DKD~LEsAL~~L~qqME 462 (746)
+++|+++-..|..|+.++.
T Consensus 102 ~~~~~~~~~~i~~L~~~i~ 120 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQ 120 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 4566666666666655443
No 400
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.72 E-value=1.3e+02 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=33.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQ 478 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQ 478 (746)
.+.....++.++++.++++.--+.|+.++.... +|..+|+++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~-~~~rIe~~Ar~~ 70 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS-RHERIEKIAKKQ 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHh
Confidence 446677777788888888888888888877655 488888887654
No 401
>PF13125 DUF3958: Protein of unknown function (DUF3958)
Probab=29.72 E-value=5e+02 Score=24.79 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHH
Q psy2772 481 LERELSRVRSILAHNSKKLEETVAANAR-------LESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQAL 553 (746)
Q Consensus 481 LE~eLsrVRaeLSrnSkELE~twaEyaR-------LE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdV 553 (746)
-|.+---.+-.=++.=+.+-.||-.=.- .=+|+-.+.+++...+++ +|-.|.+|-++.-|+
T Consensus 18 ~E~df~E~~~r~~rLF~ril~tWh~Dre~s~fF~n~~qe~~~ieRk~t~eLE~------------qkE~LlkEkR~L~d~ 85 (99)
T PF13125_consen 18 AEQDFHEWRNRSNRLFNRILETWHGDREMSHFFMNMLQEAQHIERKLTFELEE------------QKETLLKEKRDLSDL 85 (99)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 3444444444444445555666643211 224566667777777764 788999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2772 554 VGDLQRQRQELSA 566 (746)
Q Consensus 554 vggLsrQRqeLs~ 566 (746)
=++|+.||+.|+.
T Consensus 86 E~~l~yq~q~L~r 98 (99)
T PF13125_consen 86 ENDLSYQQQQLAR 98 (99)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999863
No 402
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=29.66 E-value=1.1e+02 Score=34.65 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=35.6
Q ss_pred eeeecc------hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCC
Q psy2772 413 RIRIGV------MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHA 466 (746)
Q Consensus 413 ri~e~d------~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~d 466 (746)
=.+.|| .+.|+..-+.-=-|+.|||..|..+.+.++.-+. |..|...++...+
T Consensus 298 VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~ 356 (448)
T PF05761_consen 298 VLYFGDHIYGDILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEE-LQELEELLEELQD 356 (448)
T ss_dssp EEEEESSTTTTHHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHC
T ss_pred EEEECCchhhhhhhhccccceEEEEEehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHH
Confidence 366666 3455555555556899999999999999887776 6666666554443
No 403
>KOG1666|consensus
Probab=29.63 E-value=6.2e+02 Score=27.03 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy2772 552 ALVGDLQRQRQELSAQVKQLTEKSNSLSQ 580 (746)
Q Consensus 552 dVvggLsrQRqeLs~qVrqLt~~s~~l~~ 580 (746)
.++.+|..||+.|.++-..|.+-+..|..
T Consensus 153 ~IL~dL~~QRe~L~rar~rL~~td~~lgk 181 (220)
T KOG1666|consen 153 EILEDLHGQREQLERARERLRETDANLGK 181 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhH
Confidence 47899999999999999999987776653
No 404
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.63 E-value=6.1e+02 Score=28.40 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2772 451 ENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEE 501 (746)
Q Consensus 451 EsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~ 501 (746)
|.+-..++.+- +..+...+-++..|++.|+.++-..|++...+||++-.
T Consensus 12 ~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 12 EAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444441 22356777788899999999999999999999999854
No 405
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.52 E-value=1.4e+02 Score=30.68 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
..+.+.-+||.+|++|+..|+..++
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665555
No 406
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.26 E-value=6.7e+02 Score=26.09 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHH
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS-PAEVERYRRQQRLLERELSRVRSILAHNS-------KKL 499 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-Pa~~EKi~~QQrlLE~eLsrVRaeLSrnS-------kEL 499 (746)
+..+||.+.|..|+++=.++++--.....--+++..-+|+ -+++..+..---.|-+-.-+.+..+..-- +.+
T Consensus 41 ~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~ 120 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCI 120 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy2772 500 EETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSL 578 (746)
Q Consensus 500 E~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l 578 (746)
++....+...|+--..||.--.+++ +.+|- -..+.....+.|+-..|..+--.+-+.++|-.++.|-|.....|
T Consensus 121 ~ey~~~l~~~eqry~aLK~hAeekL-~~ANe----ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 121 EEYEERLKKEEQRYQALKAHAEEKL-EKANE----EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>KOG0972|consensus
Probab=29.21 E-value=4.4e+02 Score=29.59 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=38.0
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-------------hhHHHHHHHHHHHH
Q psy2772 461 MHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANA-------------RLESELVVLRQKLQ 521 (746)
Q Consensus 461 ME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEya-------------RLE~EV~~LRqkLQ 521 (746)
|.+|+.--...-.+++-+..++.+.+.--++|++++-|+|.--.|.. ++-+.|.-||+.+|
T Consensus 279 ~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~ 352 (384)
T KOG0972|consen 279 MQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQ 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHH
Confidence 44555444555666677777777777777777777776666555433 35555666666555
No 408
>KOG2185|consensus
Probab=29.10 E-value=2.3e+02 Score=32.70 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=32.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKK 498 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkE 498 (746)
=+.++.|+.||+|--+|+.+|.. .+.+....+++..|-+--+.+|.+++++.+..|+|
T Consensus 416 v~~edeirrlkrdm~klkq~l~R-------N~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~e 473 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNR-------NKGDLVVSEALQERLKEVRKALASLLAQEAALSNE 473 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45667777777777777666543 22344444555445555555555555555555443
No 409
>KOG3705|consensus
Probab=28.90 E-value=57 Score=37.46 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=56.1
Q ss_pred hhhhhhhhhh----hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 421 HAISRDQIAS----KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 421 ~klSr~ce~d----KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
++|++.+.+. +-++..-+.|..||+.-|.|.+.|+.+++.-. .|+ .++-.|-+.||+++..-....-.+-
T Consensus 30 ~~L~n~q~~~~~s~R~~sq~l~~le~l~qqNEdLk~~~e~lr~~~~--~d~----~~am~~v~~Le~~~~npk~~~~E~~ 103 (580)
T KOG3705|consen 30 SQLSNNQSQGGDSIRAWSQTLEALEKLQQQNEDLKSILEKLRQERN--DDH----KKAMEQVHQLEPNPENPKLPKPEPV 103 (580)
T ss_pred eeecccCCCCcccHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccc--cch----hhHHHHHhhCCCCcCCcCcCCCCch
Confidence 4566665521 11222223455677888888888888887532 222 3455667778888777665555666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
||.-.-|+-.+...+|| +|..++
T Consensus 104 k~~~r~~n~lg~~dhE~--~rRri~ 126 (580)
T KOG3705|consen 104 KEIIRKPNILGPVDHEV--QRRRID 126 (580)
T ss_pred HHHhcCCccCCCccHHH--HHHHHH
Confidence 77777777766655543 444444
No 410
>KOG1265|consensus
Probab=28.83 E-value=4.5e+02 Score=33.31 Aligned_cols=100 Identities=20% Similarity=0.158 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHH---H--HHHH
Q psy2772 483 RELSRVRSILAHNSKKLEETVA-----ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL---R--RVQA 552 (746)
Q Consensus 483 ~eLsrVRaeLSrnSkELE~twa-----EyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekEL---w--RIQd 552 (746)
....+++++++..-+=|.++-. =-+.+|.|--.||.+|+.-+.+...+ ...-..++++++++ . .|+.
T Consensus 1056 ~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~---~~~~kdK~e~er~~rE~n~s~i~~ 1132 (1189)
T KOG1265|consen 1056 LKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV---DKVIKDKAERERRKRELNSSNIKE 1132 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccccccHHHHHHHHHHHHHHHHHH
Confidence 3345666666666655554432 24678999999999999877654331 11234566665544 3 4788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q psy2772 553 LVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPG 585 (746)
Q Consensus 553 VvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~ 585 (746)
+|+-..|--+-.+...+||+++....-+||.-.
T Consensus 1133 ~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~ 1165 (1189)
T KOG1265|consen 1133 FVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEE 1165 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888888888999998888777776543
No 411
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.79 E-value=1.6e+02 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=23.2
Q ss_pred HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 492 LAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 492 LSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
|...+..+.+-+.+.++|+..|..|+++|.+..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334566677788899999999999999999755
No 412
>KOG3759|consensus
Probab=28.38 E-value=3.9e+02 Score=31.53 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCccccccccccCCCCCCCcccccccCCCCCCccc
Q psy2772 551 QALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGVA 619 (746)
Q Consensus 551 QdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (746)
+++|+.|+-|=+.|..-+.=|.+..-.-+ +.|+ ++-++++++.+|--++.|+--+|..
T Consensus 226 eQLV~QLkTQItDLErFInFlQ~e~~e~s----~~p~-------~~~g~hs~~~sg~kt~nG~~~tgs~ 283 (621)
T KOG3759|consen 226 EQLVDQLKTQITDLERFINFLQDEVGENS----NQPL-------QTRGGHSEPKSGGKTGNGSFRTGSS 283 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCC-------CCCCCCCCccccccCCCCccccccc
Confidence 45666666666666655554442111100 1122 2456777787777777777666653
No 413
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.15 E-value=9.3e+02 Score=27.38 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHH
Q psy2772 542 ALEAELRRVQAL-----VGDLQRQRQEL 564 (746)
Q Consensus 542 qLekELwRIQdV-----vggLsrQRqeL 564 (746)
.|+.||.|-... -..|..|+.||
T Consensus 330 ~L~~eL~~~~~~~~~~l~~~l~~~~~e~ 357 (582)
T PF09731_consen 330 ELRQELKRQEEAHEEHLKNELREQAIEL 357 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566654433 34556666666
No 414
>PRK04325 hypothetical protein; Provisional
Probab=28.07 E-value=3.2e+02 Score=23.95 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 491 ILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 491 eLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
-|...++.+-+-+.+.++|+..|..|+++|.+..
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444566777788888999999999999997653
No 415
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.82 E-value=3.6e+02 Score=29.21 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=47.5
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE 510 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE 510 (746)
...-++.+|++.++.+|+.|-.-|..+..+.+ -+++.|.+++.+.|+.-. ...+|+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~e-----------------e~~erlk~le~E~s~LeE-------~~~~l~ 190 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYE-----------------EVQERLKRLEVENSRLEE-------MLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH-------HHHhch
Confidence 44567788899999999988887777665543 355667777777776543 345677
Q ss_pred HHHHHHHHHHHH
Q psy2772 511 SELVVLRQKLQW 522 (746)
Q Consensus 511 ~EV~~LRqkLQa 522 (746)
.+|.-||..+-+
T Consensus 191 ~ev~~L~~r~~E 202 (290)
T COG4026 191 GEVYDLKKRWDE 202 (290)
T ss_pred hHHHHHHHHHHH
Confidence 777777777653
No 416
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=27.65 E-value=2.9e+02 Score=27.15 Aligned_cols=39 Identities=13% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 483 RELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 483 ~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
+++-|...+..++ -.+++++..++..++.++..++++|.
T Consensus 37 ~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (265)
T TIGR00999 37 KTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSELR 78 (265)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 26778887888888777777777665
No 417
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.59 E-value=96 Score=27.66 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=44.9
Q ss_pred cccccccCCCCcceeeec-chhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC
Q psy2772 400 AELPIRVRPVSPIRIRIG-VMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVH 465 (746)
Q Consensus 400 ~~l~irvrp~~p~ri~e~-d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~ 465 (746)
++.|-++.+-..|-+.+| ++=+..+. +.....++.++..|+...++|++.+..++.+|+...
T Consensus 59 ~~~~~~i~~~~~v~v~iG~~~~ve~~~----~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 59 LFVKAEVKDDDKVLVDLGTGVYVEKSL----EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred eEEEEEECCCCEEEEEecCCEEEEecH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777 66666554 345677788888888888888888888887776654
No 418
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=27.32 E-value=3.6e+02 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhh
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKM 461 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqM 461 (746)
+.++.++..|.+..++||.-+..+..+|
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555555555555555
No 419
>KOG2273|consensus
Probab=27.10 E-value=9.2e+02 Score=26.99 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--
Q psy2772 424 SRDQIASKLHSRGRNICSVQ--GQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKL-- 499 (746)
Q Consensus 424 Sr~ce~dKilqelE~kLq~L--k~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkEL-- 499 (746)
+.+-...++...++..+..+ ++|-..+...|.-+-+-++..........++.+.-..++++|...+..+..-.+..
T Consensus 333 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 412 (503)
T KOG2273|consen 333 EALSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRS 412 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q ss_pred -------HHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 500 -------EETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 500 -------E~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
..+-.++..++..+..+.+.|+.+.-.... -...+..|+.|-+. .+++++...+....
T Consensus 413 ~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~~~e~~~f~~------~~~~d~~~~~~~~~ 477 (503)
T KOG2273|consen 413 SFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDE---------ISERIRAELERFEE------SRRQDFKESLKKYA 477 (503)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---------HHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q ss_pred hhcccccccc
Q psy2772 573 EKSNSLSQQI 582 (746)
Q Consensus 573 ~~s~~l~~qi 582 (746)
+..=.+.+++
T Consensus 478 d~~i~~~~~~ 487 (503)
T KOG2273|consen 478 DLHVEYAEQI 487 (503)
T ss_pred HHHHHHHHHH
No 420
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.03 E-value=1.9e+02 Score=31.66 Aligned_cols=35 Identities=17% Similarity=0.458 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 577 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~ 577 (746)
|+..+-.|++.+..+.++-..|...++-|-++|..
T Consensus 156 lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 156 LEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 56666666666666665555566666666555433
No 421
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.98 E-value=6.7e+02 Score=25.31 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=55.8
Q ss_pred hccCCChHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcch
Q psy2772 462 HGVHASPAEV-ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSV 540 (746)
Q Consensus 462 E~~~dqPa~~-EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qek 540 (746)
.=||+=|... .+...+-.-|+.++..++..++..-.+++.+-. .| +-..-|..+-+.+.. ...+.
T Consensus 54 n~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~--~r---~~~~eR~~~l~~l~~---------l~~~~ 119 (188)
T PF03962_consen 54 NYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK--GR---EESEEREELLEELEE---------LKKEL 119 (188)
T ss_pred eEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc---cccHHHHHHHHHHHH---------HHHHH
Confidence 3455555443 333444466777777777777777777776621 11 111223333322221 11133
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 541 AALEAELRRVQ----ALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 541 AqLekELwRIQ----dVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
..|++||.... ..+..|.+.-+.+-.++..-||+-..|..-+..
T Consensus 120 ~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 120 KELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444443221 234445555555666777788888777755543
No 422
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.96 E-value=7.4e+02 Score=25.87 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=20.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 431 KLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
+--++++.+|.+++++-..-..+|.-....
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~ 34 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEET 34 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888877777776666655543
No 423
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.95 E-value=1.6e+02 Score=23.92 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.||+|--..++.--... ++|.+|.+|...|+..++
T Consensus 2 QlE~Dy~~LK~~yd~Lk-------~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 2 QLERDYDALKASYDSLK-------AEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred chHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 35555555555444443 445555555444444444
No 424
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=26.70 E-value=4.4e+02 Score=23.16 Aligned_cols=51 Identities=29% Similarity=0.453 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 446 AKEMLENALGSLRHKMHGVH--ASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 446 DKD~LEsAL~~L~qqME~~~--dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
.-+.|+..|.....-+-.|- .+|.+++.+..-...++..|.+++..+..+.
T Consensus 14 ~~~~l~~~l~~~e~~~RgYlltgd~~~l~~y~~~~~~~~~~l~~L~~l~~~~p 66 (138)
T PF05227_consen 14 AIEQLESALLDQESALRGYLLTGDPEFLEPYQEARARLEKALAQLRQLVQDNP 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTT-H
T ss_pred HHHHHHHHHHHHHHHhhHHHHcCCHhhhchHHHHHHHHHHHHHHHHHHhcCCH
Confidence 33445555554444455554 5788888888888888888888887775444
No 425
>KOG2264|consensus
Probab=26.69 E-value=4.4e+02 Score=31.92 Aligned_cols=67 Identities=28% Similarity=0.330 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 483 RELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQ 562 (746)
Q Consensus 483 ~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRq 562 (746)
+|+.||+ +-+|-||.+.=..-.+|-.|+++++++..|=-+ .--+-|-||.+.+-+++.-|+|-.
T Consensus 82 ~e~~RI~---~sVs~EL~ele~krqel~seI~~~n~kiEelk~-------------~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 82 REQKRIL---ASVSLELTELEVKRQELNSEIEEINTKIEELKR-------------LIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHhHHHHHHHHHH
Confidence 3445554 445556655555666677777777777664332 111234566777777776666655
Q ss_pred HHH
Q psy2772 563 ELS 565 (746)
Q Consensus 563 eLs 565 (746)
||-
T Consensus 146 El~ 148 (907)
T KOG2264|consen 146 ELR 148 (907)
T ss_pred HHH
Confidence 553
No 426
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.68 E-value=7.5e+02 Score=25.83 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHcCC
Q psy2772 299 CAATLQVISLPFKDQGR 315 (746)
Q Consensus 299 VSASLQDIIRrfKkrg~ 315 (746)
.+|+++||++..++++.
T Consensus 24 ~gAa~~D~~~~~~~r~~ 40 (319)
T PF02601_consen 24 TGAAIQDFLRTLKRRNP 40 (319)
T ss_pred chHHHHHHHHHHHHhCC
Confidence 37999999999988763
No 427
>PRK02119 hypothetical protein; Provisional
Probab=26.60 E-value=4e+02 Score=23.37 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
|+++|.++++ ..+..+-+-|.+.++|+..|..|++.|.+..
T Consensus 17 rla~QE~tie-----------~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 17 KIAFQENLLE-----------ELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555554 4556677778888999999999999998643
No 428
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.56 E-value=8.5e+02 Score=29.99 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhhccCCCCCCCCcch-HHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS---RREVCNGTASLSNGPSV-AAL 543 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQ---r~~~~~~~~~~~~~qek-AqL 543 (746)
-+++..+..+=+.||+.|...-...+...++|-.+-.|-+-|.++|...+.+|.+| ..+..+..+....+..+ ..-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 34566667777788888877777777778899999999999999999999999887 22222221122222111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy2772 544 EAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 577 (746)
Q Consensus 544 ekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~ 577 (746)
+.|=.++.+-|..|+.-|..|...+.=|.-+-++
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343455566677777777777666555544444
No 429
>KOG2264|consensus
Probab=26.49 E-value=3.6e+02 Score=32.64 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772 483 RELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 483 ~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~ 525 (746)
.|+..++.-+-..-+++++.--|..+|+.++++....+.|-|+
T Consensus 107 seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 107 SEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3333333333333444555555666778888777777666654
No 430
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.47 E-value=6.2e+02 Score=31.79 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=67.6
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 417 GVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVH--ASPAEVERYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 417 ~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~--dqPa~~EKi~~QQrlLE~eLsrVRaeLSr 494 (746)
.|+.----|+.||.-++.+-.+.+-.-+..-+.-|--.+.++.|+-.|. =+-+.+-.+.|||-+--=|-.+.--.|+.
T Consensus 355 ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~d 434 (1480)
T COG3096 355 ADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPD 434 (1480)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4444445567777777777777766666666666777788888887776 23556677888887654443343344566
Q ss_pred hhHHHHHHHHHH-----hhhHHHHHHHHHHHHH
Q psy2772 495 NSKKLEETVAAN-----ARLESELVVLRQKLQW 522 (746)
Q Consensus 495 nSkELE~twaEy-----aRLE~EV~~LRqkLQa 522 (746)
.+.+=-++|.+- ..+-.+|..|.++|--
T Consensus 435 Lt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~ 467 (1480)
T COG3096 435 LTADSAEEWLETFQAKEEEATEKLLSLEQKMSM 467 (1480)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 666655566543 3344567778888763
No 431
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=26.43 E-value=7.5e+02 Score=25.71 Aligned_cols=90 Identities=10% Similarity=0.135 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQA 552 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQd 552 (746)
..+...+...++...+..+|....++|+++=..|.++.+|++..|++++..-.. .....+.+||==.+.+.
T Consensus 102 ~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~---------~~~~~~~~eKak~k~~~ 172 (237)
T cd07657 102 DKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVK---------GGRGGRKLDKARDKYQK 172 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cccchhhHHHHHHHHHH
Confidence 344455666677777777888888999999999999999999999999866432 11234555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2772 553 LVGDLQRQRQELSAQVKQL 571 (746)
Q Consensus 553 VvggLsrQRqeLs~qVrqL 571 (746)
-.-.|..-|.|-..++..-
T Consensus 173 ~~~k~~~akNeY~l~l~~a 191 (237)
T cd07657 173 ACRKLHLCHNDYVLALLEA 191 (237)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 432
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=26.07 E-value=5.5e+02 Score=24.00 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 499 LE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
+.++...+.+..+++...+..+..+....- ..+-+. +-+++..|++++.-+.+-|.+.-.+-+.+.
T Consensus 90 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~v-------i~pl~~-~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~ 155 (229)
T PF03114_consen 90 LGNALEKFGEAMQEIEEARKELESQIESTV-------IDPLKE-FLKEFKEIKKLIKKREKKRLDYDSARSKLE 155 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888887765311 112222 338888888888888887777766555544
No 433
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.97 E-value=3.5e+02 Score=21.78 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEE 501 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~ 501 (746)
|.....|......|+.....++..+..--..||+
T Consensus 72 ~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 72 PEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 7777788877777777777777777766666654
No 434
>KOG4403|consensus
Probab=25.96 E-value=9.5e+02 Score=28.38 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhh-------HHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHH----
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQA-------KEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSR---- 487 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~D-------KD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsr---- 487 (746)
|--+|.-++-+..-++|+..+|..-+++ |-.||+-|. +..+++.=+..+|++.++
T Consensus 247 m~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~--------------ea~rl~elreg~e~e~~rkelE 312 (575)
T KOG4403|consen 247 MMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD--------------EAPRLSELREGVENETSRKELE 312 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh--------------hhhhhhhhhcchhHHHHHHHHH
Q ss_pred -HHHHHHhhhHHHHHH--------HHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy2772 488 -VRSILAHNSKKLEET--------VAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 488 -VRaeLSrnSkELE~t--------waEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLs 558 (746)
+|.+|.+.=+|||-- -.-..+|-.||++ +-++.+|.+ -+++|.-..+-.+-|+
T Consensus 313 ~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~--q~~~kkrqn----------------aekql~~Ake~~eklk 374 (575)
T KOG4403|consen 313 QLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEV--QYYNKKRQN----------------AEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH--HHHHHHhhh----------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy2772 559 RQRQEL 564 (746)
Q Consensus 559 rQRqeL 564 (746)
+.|-.+
T Consensus 375 KKrssv 380 (575)
T KOG4403|consen 375 KKRSSV 380 (575)
T ss_pred Hhhcch
No 435
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.91 E-value=3.7e+02 Score=31.60 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCcceeeecchh------hhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Q psy2772 409 VSPIRIRIGVMI------HAISRDQIASKLHSRGRNICSVQGQAKEMLENALG 455 (746)
Q Consensus 409 ~~p~ri~e~d~d------~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~ 455 (746)
..+|+.+|.-|- .-+|..-|.||.|..-|+.|..||+-|-.||+|.-
T Consensus 425 ~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~ 477 (527)
T PF15066_consen 425 ANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATT 477 (527)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 356777766543 45678889999999999999999999999997653
No 436
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.88 E-value=9.2e+02 Score=26.56 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=29.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP-AEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP-a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw 503 (746)
.++...|..|++..+.|+..+.....++..+...+ ..+--...++....++|.....+|+..-.+||++.
T Consensus 84 ~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~ 154 (301)
T PF06120_consen 84 AAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQ 154 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445544544444433333222 11111112244445555555555554444444443
No 437
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.73 E-value=3.2e+02 Score=31.62 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHhhhHHHHHHHHHHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLE---ETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE---~twaEyaRLE~EV~~LRqkLQ 521 (746)
...++++..+...+++++..+..+|.+..++.+ .+|.+|...|.+.......+.
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 270 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL 270 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666666677777777777777666543 335555555555555555443
No 438
>PF14282 FlxA: FlxA-like protein
Probab=25.67 E-value=2.4e+02 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 470 EVERYRRQQRLLERELSRVRSILAHN 495 (746)
Q Consensus 470 ~~EKi~~QQrlLE~eLsrVRaeLSrn 495 (746)
-.+....|+.+|+.++.-+.++|++.
T Consensus 45 ~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 45 DAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555788899999999998888764
No 439
>PRK10807 paraquat-inducible protein B; Provisional
Probab=25.61 E-value=6.2e+02 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 498 KLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 498 ELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
+|.++..+..|+=+|+..|=..|.
T Consensus 501 ~l~~tl~~l~~~~r~lr~l~~~L~ 524 (547)
T PRK10807 501 KMVADMQRLDQVLRELQPVLKTLN 524 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 440
>PRK12705 hypothetical protein; Provisional
Probab=25.60 E-value=1.1e+03 Score=27.52 Aligned_cols=42 Identities=26% Similarity=0.167 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 485 LsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
|.+-...|.+...+|++.-......+.++..+++.+...++.
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ 134 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYR 134 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444443
No 441
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=25.51 E-value=8.7e+02 Score=26.17 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL 509 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL 509 (746)
|++|.....+ |-..+-..|..|...|... +|..... ......|-+ .+.+.-..+++....|..+
T Consensus 33 ~~iL~~v~~~------d~~~vg~~L~~L~~~~~~~--dp~~~~~-~~~~~~l~k-------lf~k~~~~~~~~~~ky~sv 96 (333)
T PF05816_consen 33 DRILDRVRNK------DSGEVGELLNELRKEMDEL--DPSELKD-EKKKGFLGK-------LFGKAKNSLERYFAKYQSV 96 (333)
T ss_pred HHHHHHHHHh------ccchHhHHHHHHHHHHHhC--Chhhhhh-hhhhhHHHH-------hhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772 510 ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584 (746)
Q Consensus 510 E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~ 584 (746)
+..|..+-..|...... |.++.--++.+-..+..--++|...+--....-+.+..++-|
T Consensus 97 ~~qId~I~~~L~~~~~~----------------L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~ 155 (333)
T PF05816_consen 97 QSQIDKIIAELESGQDE----------------LLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLP 155 (333)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
No 442
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=25.48 E-value=8.8e+02 Score=27.20 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHhhh--ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 449 MLENALGSLRHKMH--GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 449 ~LEsAL~~L~qqME--~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
.+++-+..+..+|. .++++|....++.++...|+.- -++|.++..++.++..++.-++
T Consensus 10 ~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~---------------v~~~~~~~~~~~~~~~~~~l~~ 69 (359)
T PRK00591 10 ALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPI---------------VEAYREYKQAQEDLEEAKEMLE 69 (359)
T ss_pred HHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444555554 4668999988887666555433 3566777778888888887765
No 443
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.25 E-value=3.7e+02 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 541 AALEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 541 AqLekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
.+|.+.=..|+.+-..|.+-|-||...-.-..
T Consensus 102 gQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 102 GQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455566666666677777665433333
No 444
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.22 E-value=6.4e+02 Score=24.53 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy2772 479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558 (746)
Q Consensus 479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLs 558 (746)
|.|.+-...|=.+|-++|..|..|=. .|-+.+.-|=.+|.++.+ ...+++.|+--|+.=++.+.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKk---hLsqRId~vd~klDe~~e-------------i~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKK---HLSQRIDRVDDKLDEQKE-------------ISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHH-------------HHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444444444444432 244555666667776665 23445666655555555555
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q psy2772 559 RQRQELSAQVKQLTEKSNSLS 579 (746)
Q Consensus 559 rQRqeLs~qVrqLt~~s~~l~ 579 (746)
.-=+++-..|+.|-.+-..+.
T Consensus 103 ~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 103 DDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555566677777776655543
No 445
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=24.94 E-value=9.7e+02 Score=27.78 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=62.3
Q ss_pred hhhhhhhhhhhhhhhh-----h-----hhhhHHHHHHHHHHHhHhh--hccCCC-------h--HHHHHHHHHHHHHHHH
Q psy2772 426 DQIASKLHSRGRNICS-----V-----QGQAKEMLENALGSLRHKM--HGVHAS-------P--AEVERYRRQQRLLERE 484 (746)
Q Consensus 426 ~ce~dKilqelE~kLq-----~-----Lk~DKD~LEsAL~~L~qqM--E~~~dq-------P--a~~EKi~~QQrlLE~e 484 (746)
-|..-+..+.+|..|. - +.=|||++|.-|..+=+.- -..-|+ | -++++|+.==+.|=..
T Consensus 199 ~C~k~re~q~qe~QLae~~lq~vq~~C~pLDkdk~~~~l~~lWRDSii~R~Ld~~~y~ly~~l~~el~siRr~Cd~lP~~ 278 (442)
T PF06637_consen 199 ECGKAREQQQQERQLAEEQLQKVQALCLPLDKDKFETDLRNLWRDSIIPRSLDNLGYSLYHPLGPELESIRRTCDHLPKI 278 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCcchHHHHHHHHhhchHH
Confidence 4555555555554433 2 2348899998887766552 111111 1 3466666655555555
Q ss_pred HHHHHHHHHhh-hHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772 485 LSRVRSILAHN-SKKLEETVAANARLESELVVLRQKLQWSRRE 526 (746)
Q Consensus 485 LsrVRaeLSrn-SkELE~twaEyaRLE~EV~~LRqkLQaQr~~ 526 (746)
.+.-=.+|++- =...|+.-+||++|+..=+.+-+.||+..+.
T Consensus 279 m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qea 321 (442)
T PF06637_consen 279 MTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEA 321 (442)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555554 3566777889999998888888888877653
No 446
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.94 E-value=6.7e+02 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772 496 SKKLEETVAANARLESELVVLRQKLQW 522 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~LRqkLQa 522 (746)
-..||+++..+..||.|+-.+-.-.++
T Consensus 132 V~qLEk~~~q~~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 132 VEQLEKLREQIEQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555444443
No 447
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=24.93 E-value=4.3e+02 Score=23.78 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=19.8
Q ss_pred HHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 490 SILAHNSKKLEETVAANARLESELVVLRQ 518 (746)
Q Consensus 490 aeLSrnSkELE~twaEyaRLE~EV~~LRq 518 (746)
.++.+....|.++=++|.+|..+|..+|+
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555566777777778888777777664
No 448
>KOG0288|consensus
Probab=24.92 E-value=8e+02 Score=28.63 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy2772 555 GDLQRQRQELSAQVKQLTEKS 575 (746)
Q Consensus 555 ggLsrQRqeLs~qVrqLt~~s 575 (746)
--|+.|+-|..+++..|.+.-
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~ 120 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMR 120 (459)
T ss_pred HHHHHhhhhhccchhhHHHHH
Confidence 345555556665555555443
No 449
>KOG4005|consensus
Probab=24.72 E-value=2.8e+02 Score=30.15 Aligned_cols=56 Identities=27% Similarity=0.197 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
.+-++++.||-+.|++|=-+.+.+=-..=.+=|..+++|-.|-++++.||+.|-+.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 57788999999999998888877776666777888999999999999888888544
No 450
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.64 E-value=3.5e+02 Score=28.22 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=48.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhhhc-cCCChHHHHHHHHH-HHHH---HHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Q psy2772 439 ICSVQGQAKEMLENALGSLRHKMHG-VHASPAEVERYRRQ-QRLL---ERELSRVRSILAHNSKKLEETVAANARLESEL 513 (746)
Q Consensus 439 kLq~Lk~DKD~LEsAL~~L~qqME~-~~dqPa~~EKi~~Q-QrlL---E~eLsrVRaeLSrnSkELE~twaEyaRLE~EV 513 (746)
..-.|+++-..||.-|..+.++-+. ..+.+....-|++| +-|| +++|.....--+.+++.|...-++..-+|+.|
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445677777777777777777665 23333344444444 2222 23333322223344677777777888888888
Q ss_pred HHHHHHHH
Q psy2772 514 VVLRQKLQ 521 (746)
Q Consensus 514 ~~LRqkLQ 521 (746)
..|..-|.
T Consensus 177 ~~Le~~L~ 184 (195)
T PF12761_consen 177 DGLESHLS 184 (195)
T ss_pred HHHHHHHH
Confidence 88877764
No 451
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=24.56 E-value=4.1e+02 Score=26.58 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=9.1
Q ss_pred ceeeecchhhhhhhh
Q psy2772 412 IRIRIGVMIHAISRD 426 (746)
Q Consensus 412 ~ri~e~d~d~klSr~ 426 (746)
-++..+|....|+..
T Consensus 46 ~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 46 QKVKKGQVLARLDDD 60 (322)
T ss_pred CEEcCCCEEEEECCH
Confidence 455566766666543
No 452
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=24.45 E-value=2.4e+02 Score=33.99 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=40.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhc--c--CCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHG--V--HASPAEVERYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~--~--~dqPa~~EKi~~QQrlLE~eLsrVRaeLSr 494 (746)
.+..+..|+.+.++||+-++.+..+|.. | +..|.-+++-+.....++.+|..+...|+.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~ 871 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLAR 871 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888888888888764 3 345566666666667777777776666654
No 453
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=24.38 E-value=6.5e+02 Score=25.77 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 444 GQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRV-RSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 444 k~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrV-RaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
-.||..+++.+............ ..-..+..+-..|.++|--+ .|||-.--.+|++.|.+ +||..+.+||.+=|
T Consensus 24 v~eKK~Insl~~~v~~l~nk~d~--~~yknyk~ki~eLke~lK~~~NAEleekll~lq~lfq~--Kl~aKL~aLKAak~ 98 (160)
T PF03978_consen 24 VEEKKEINSLIEDVSKLNNKSDA--EAYKNYKKKINELKEDLKDVSNAELEEKLLKLQKLFQD--KLEAKLAALKAAKQ 98 (160)
T ss_pred HHHHHHHHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 56888888888888776554443 47788888899999999887 46888888888888864 78888888887544
No 454
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.05 E-value=2.8e+02 Score=27.92 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHH
Q psy2772 496 SKKLEETVAANARLESELVVL 516 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~L 516 (746)
=.|||+-....-+||+-|..+
T Consensus 124 r~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888877663
No 455
>PRK12704 phosphodiesterase; Provisional
Probab=23.93 E-value=1.2e+03 Score=27.14 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhh-hhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 428 IASKLHSRGRNIC-SVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 428 e~dKilqelE~kL-q~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
++....++..... ..+++-|..+|+-+...++++.+-... +++=..+-..-++.|..-..+|.+--++|++--.++
T Consensus 50 eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~r---L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eL 126 (520)
T PRK12704 50 EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR---LLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 507 ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK 574 (746)
Q Consensus 507 aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~ 574 (746)
.+++.++..+++.....++..++ |-.|=-|=+.+=.-=..-|+|.+.-+|+.-+.
T Consensus 127 e~~~~~~~~~~~~~~~~l~~~a~-------------lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~ 181 (520)
T PRK12704 127 EKKEEELEELIEEQLQELERISG-------------LTAEEAKEILLEKVEEEARHEAAVLIKEIEEE 181 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.89 E-value=3.9e+02 Score=22.51 Aligned_cols=48 Identities=35% Similarity=0.502 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHhhhHHHHHHH
Q psy2772 469 AEVERYRRQQRLLERELSRVRSILAH--------------NSKKLEETVAANARLESELVVL 516 (746)
Q Consensus 469 a~~EKi~~QQrlLE~eLsrVRaeLSr--------------nSkELE~twaEyaRLE~EV~~L 516 (746)
++++++..+..-|+.++.++...|+. .-.+|++.-.+..+|+.-+..|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777764 2245555555555555554444
No 457
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.89 E-value=6.3e+02 Score=24.36 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772 446 AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLR 517 (746)
Q Consensus 446 DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LR 517 (746)
.+..|++-|.+|...||+++ ...+.+..|.+.|+.-+-.++++-...++.....=+.++-+...|+--|
T Consensus 10 s~~el~n~La~Le~slE~~K---~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEK---TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp ----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH---hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554 2234446677777777777777766666666655555555555555443
No 458
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.85 E-value=3.6e+02 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
..+-..++...++.+|-++.++|+.+...|.++..|-...+.++++-
T Consensus 111 ~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~a 157 (241)
T cd07656 111 ISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEA 157 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777778888999999999999999999999998743
No 459
>COG4678 Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]
Probab=23.73 E-value=1.5e+02 Score=30.46 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=71.9
Q ss_pred cCCCCcceeeec---chhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHH
Q psy2772 406 VRPVSPIRIRIG---VMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLE 482 (746)
Q Consensus 406 vrp~~p~ri~e~---d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE 482 (746)
..|.+=|.|-.. +|--+--|.+..++--.+...++.= || =.|+.-+++++|+-.=-
T Consensus 69 ~HP~~~v~i~~~~ng~cSTAAGrYQ~L~~tW~~~~~~l~l----~d-----------------F~P~~QD~va~~~i~d~ 127 (180)
T COG4678 69 DHPRKCVTIPTGPNGLCSTAAGRYQLLNRTWDDYAPQLHL----KD-----------------FSPESQDAVAYRWIRDR 127 (180)
T ss_pred hCChhhEEeecCCCCccccchhhHHHHHhHHHHhhhhcCc----cc-----------------CChhhhhHHHHHHHHhc
Confidence 345555555554 7888888999888888877766643 21 46899999999885443
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHH-----HHhhhHHHHHHHHHHHHHH
Q psy2772 483 RELSRVRS-ILAHNSKKLEETVA-----ANARLESELVVLRQKLQWS 523 (746)
Q Consensus 483 ~eLsrVRa-eLSrnSkELE~twa-----EyaRLE~EV~~LRqkLQaQ 523 (746)
.=|.-|++ -|.++-.|+-++|+ ||.+.|+.+..|+|+++.-
T Consensus 128 ~al~~i~aG~i~qal~k~s~~WaSL~g~~ynq~~~sl~~L~~k~l~~ 174 (180)
T COG4678 128 DALADIQAGRIDQALRKLSNTWASLYGIEYNQIERSLPELYQKYLQE 174 (180)
T ss_pred ChHhHHhcccHHHHHHHhcchhhcccccccCcchhhHHHHHHHHHHh
Confidence 44455554 47778889999995 8999999999999999853
No 460
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=23.62 E-value=9.6e+02 Score=25.99 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=60.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhh-------hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772 424 SRDQIASKLHSRGRNICSVQGQ-------AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496 (746)
Q Consensus 424 Sr~ce~dKilqelE~kLq~Lk~-------DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS 496 (746)
.++..+...+.....+...+++ .-..+-..-..|+.|+..|.+ | -..+|.=|..-......--
T Consensus 174 AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~------K----f~efq~tL~kSNe~F~tfk 243 (309)
T PF09728_consen 174 AKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSE------K----FEEFQDTLNKSNEVFETFK 243 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHhHHHHHHHH
Confidence 3455556666666666666666 444455555566666666543 2 3345555565566666666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQWS 523 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQaQ 523 (746)
+|||+.....-+||.|-..+|.+-..+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~ 270 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKS 270 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987744
No 461
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=23.61 E-value=69 Score=37.40 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKK 498 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkE 498 (746)
+.+++..++.|..++..+..-+..++..+... -....++.+|.-++.+|.-..|++|..--++
T Consensus 366 ~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~---~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 366 LRELEEEIQELEQEKEQLLKEIEELEASLEAL---KKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444555555544444444444443322 2345566777777777777777777654433
No 462
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.61 E-value=1.1e+02 Score=27.96 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=33.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2772 434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKL 499 (746)
Q Consensus 434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkEL 499 (746)
..+|++|.+.+++-|.+|+-|-+ ..=.| .+++.||+|+..|...|..+=++|
T Consensus 8 d~lEekl~~cr~~le~ve~rL~~-------~eLs~-------e~R~~lE~E~~~l~~~l~~~E~eL 59 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLRR-------RELSP-------EARRSLEKELNELKEKLENNEKEL 59 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcc-------cCCCh-------HHHHHHHHHHHHHHHHhhccHHHH
Confidence 45788888888888888875532 11122 247778888877777766553333
No 463
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=23.55 E-value=8.1e+02 Score=25.09 Aligned_cols=132 Identities=11% Similarity=0.142 Sum_probs=76.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhh
Q psy2772 430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN-SKKLEETVAANAR 508 (746)
Q Consensus 430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn-SkELE~twaEyaR 508 (746)
+++-.....+..+++..-+.|..-+..|+..+..-... -.+.|.+....|.++|...+..+-.- ...+++--.=+.|
T Consensus 77 ~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~--r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr 154 (247)
T PF06705_consen 77 ERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE--RPQDIEELNQELVRELNELQEAFENERNEREEREENILKR 154 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677777777777777777777776666544 34455666777777777777666544 2334444444555
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCC-------------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 509 LESELVVLRQKLQWSRREVCNGTA-------------SLSNGPSVAALEAELRRVQALVGDLQRQRQE 563 (746)
Q Consensus 509 LE~EV~~LRqkLQaQr~~~~~~~~-------------~~~~~qekAqLekELwRIQdVvggLsrQRqe 563 (746)
|+.++..+++++..-...+-.... .....+=+..+-.||.-|+.-+.--++.|..
T Consensus 155 l~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~ 222 (247)
T PF06705_consen 155 LEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQ 222 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655555555544322110000 0011133445666777777777777777754
No 464
>smart00150 SPEC Spectrin repeats.
Probab=23.54 E-value=4e+02 Score=21.50 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAH 494 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSr 494 (746)
|.+...|......|+..-..++..+..
T Consensus 69 ~~~~~~i~~~~~~l~~~w~~l~~~~~~ 95 (101)
T smart00150 69 HPDAEEIEERLEELNERWEELKELAEE 95 (101)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655555555555444443
No 465
>PLN02320 seryl-tRNA synthetase
Probab=23.34 E-value=5.6e+02 Score=29.93 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHH
Q psy2772 468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL 547 (746)
Q Consensus 468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekEL 547 (746)
-..+-.+-.+++.|+.++-..|++...+||++-... +. .+...|..|+
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~------~~--------------------------~~~~~l~~~~ 139 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKGKL------EP--------------------------SERQALVEEG 139 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------CC--------------------------CCHHHHHHHH
Confidence 556667778888999999999999999999874310 00 1223355556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 548 RRVQALVGDLQRQRQELSAQVKQLTE 573 (746)
Q Consensus 548 wRIQdVvggLsrQRqeLs~qVrqLt~ 573 (746)
..+.+-+..|..+-.++..+..++--
T Consensus 140 k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 140 KNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665555443
No 466
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=23.30 E-value=6.8e+02 Score=28.33 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhhHHHHH
Q psy2772 438 NICSVQGQAKEMLENALGSLRHKMHGVHAS-PAEVERYRRQQRLLERELSRVRSILAHN--SKKLEETVAANARLESELV 514 (746)
Q Consensus 438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-Pa~~EKi~~QQrlLE~eLsrVRaeLSrn--SkELE~twaEyaRLE~EV~ 514 (746)
..+..|+.+--+++.-|+.++..|.-..-+ |.-..+| ..|+.+|.+-+..|+.+ |+.|-+--+||.||+=|-+
T Consensus 223 ~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkari----eSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~ 298 (372)
T COG3524 223 SLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARI----ESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENT 298 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHH----HHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCcchHHHHHH
Q psy2772 515 VLRQKLQWSRREVCNGTASLSNGPSVAALEAE 546 (746)
Q Consensus 515 ~LRqkLQaQr~~~~~~~~~~~~~qekAqLekE 546 (746)
..-+++-+-+ .+-++|-+|..
T Consensus 299 fAekay~AAl-----------~SlEsArieAd 319 (372)
T COG3524 299 FAEKAYAAAL-----------TSLESARIEAD 319 (372)
T ss_pred HHHHHHHHHH-----------HHHHHHhhhhh
No 467
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=23.18 E-value=1.5e+03 Score=28.02 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 496 SKKLEETVAANARLESELVVLRQK 519 (746)
Q Consensus 496 SkELE~twaEyaRLE~EV~~LRqk 519 (746)
..+||++-.|+.|+=..|..+|..
T Consensus 435 ~~~lEea~~eker~~e~l~e~r~~ 458 (775)
T PF10174_consen 435 LETLEEALREKERLQERLEEQRER 458 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888887776666555433
No 468
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.18 E-value=1.3e+03 Score=28.43 Aligned_cols=80 Identities=23% Similarity=0.240 Sum_probs=46.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHH
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVV 515 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~ 515 (746)
++.++...-.+...|-.-|..|+.++..+.. ++..+...++.++......|..-.+.....=.....||.||-.
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~------~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~ 430 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEE------RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRA 430 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3445555555555555556666665554442 4555556666666666666666666555555566677777766
Q ss_pred HHHHHH
Q psy2772 516 LRQKLQ 521 (746)
Q Consensus 516 LRqkLQ 521 (746)
++..-.
T Consensus 431 l~~~A~ 436 (717)
T PF09730_consen 431 LSKLAG 436 (717)
T ss_pred HHHHHH
Confidence 655443
No 469
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=23.15 E-value=1.9e+02 Score=30.12 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=36.5
Q ss_pred ccCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q psy2772 405 RVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSL 457 (746)
Q Consensus 405 rvrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L 457 (746)
-|.|++|.|.. ...|++.|||.+-+|+-++++..=..|-+.| .||+|=+-|
T Consensus 104 ivkpi~~~rl~-p~L~vA~srf~~~~~L~~el~~~k~~L~~rK-~ierAKglL 154 (194)
T COG3707 104 IVKPLDESRLL-PILDVAVSRFEERRALRRELAKLKDRLEERK-VIERAKGLL 154 (194)
T ss_pred EecCcchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35666666654 3589999999999999888887766666655 356665555
No 470
>KOG0978|consensus
Probab=23.14 E-value=1.5e+03 Score=27.93 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=76.9
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC-CC-hHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy2772 418 VMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVH-AS-PAEVER--YRRQQRLLERELSRVRSILA 493 (746)
Q Consensus 418 d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~-dq-Pa~~EK--i~~QQrlLE~eLsrVRaeLS 493 (746)
+++.-++-+.-.-+-...+...++.....-+..+....-|-+|...-. .| .++.++ +.+-.++|.+++.-..-+++
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~ 513 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQIL 513 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444434444444555555555555555555555555543322 22 333333 33444566666655555554
Q ss_pred hhh----------HHHHH----HHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772 494 HNS----------KKLEE----TVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR 559 (746)
Q Consensus 494 rnS----------kELE~----twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr 559 (746)
... .+||+ -...-.+|+.|+..+.++|.....+. .+..+.-..|+.++-+.+.-|.+++.
T Consensus 514 ~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~------~e~~~~~~~Lq~~~ek~~~~le~i~~ 587 (698)
T KOG0978|consen 514 TLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKA------QEAKQSLEDLQIELEKSEAKLEQIQE 587 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 22222 22233456666666666666444321 12334555566666666666666666
Q ss_pred HHHHHHHHHHHHhhhcccc
Q psy2772 560 QRQELSAQVKQLTEKSNSL 578 (746)
Q Consensus 560 QRqeLs~qVrqLt~~s~~l 578 (746)
+=.+++.-+..++.+--.|
T Consensus 588 ~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRL 606 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666655555555443333
No 471
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.07 E-value=6.3e+02 Score=23.67 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Q psy2772 481 LERELSRVRSILAHNSKKLEETVAANARLESELV 514 (746)
Q Consensus 481 LE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~ 514 (746)
+|.+|...|.++.....++...-.+|..++++..
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555555555555555554443
No 472
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=22.89 E-value=4.3e+02 Score=21.66 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2772 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRV----QALVGDLQRQRQELSAQVKQLTEKS 575 (746)
Q Consensus 501 ~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRI----QdVvggLsrQRqeLs~qVrqLt~~s 575 (746)
..|.+...|+.+=..|=+.|.+. .. .........+..-|.+| +.++.-|+..+.+|+..++++..+.
T Consensus 8 ~dWe~l~~l~~~R~~ll~~l~~~--~~------~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~ 78 (84)
T PF05400_consen 8 GDWEELEELLDERQELLERLFEE--QA------ALSPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQLRKGR 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHC--HT------TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhc--cc------cCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777655555555540 00 11223333344444445 5678889999999999999987543
No 473
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=22.88 E-value=1.1e+03 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHcC
Q psy2772 299 CAATLQVISLPFKDQG 314 (746)
Q Consensus 299 VSASLQDIIRrfKkrg 314 (746)
.+|+++||++...++.
T Consensus 139 ~~aa~~D~~~~~~~r~ 154 (432)
T TIGR00237 139 TGAALADILHILKRRD 154 (432)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 3799999999888876
No 474
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=22.88 E-value=7.2e+02 Score=25.19 Aligned_cols=86 Identities=26% Similarity=0.254 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564 (746)
Q Consensus 485 LsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeL 564 (746)
.++-.+-|.+.+.+.+..=++-+-+|-.+.-||.=|..++.+.+- .-..||.-+.--.+=+.+|.+||
T Consensus 18 ~~rCe~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~v------------l~r~~L~allRkqAVvRrqi~eL 85 (147)
T PF02090_consen 18 QSRCEQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCV------------LSREELYALLRKQAVVRRQIQEL 85 (147)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHcccc------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777788888888889999999988753111 12345666666667778888888
Q ss_pred HHHHHHHhhhcccccccc
Q psy2772 565 SAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 565 s~qVrqLt~~s~~l~~qi 582 (746)
..+-.++-++--.+.+++
T Consensus 86 ~lq~~~i~ekR~~l~ke~ 103 (147)
T PF02090_consen 86 NLQEQQIQEKRRQLEKEK 103 (147)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888887777666555443
No 475
>KOG1737|consensus
Probab=22.81 E-value=6.7e+02 Score=31.05 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
...+.+|+++-..+|-.|..+|+.+++-..
T Consensus 288 ~~~q~~~l~~~l~~le~q~~~le~a~~~~~ 317 (799)
T KOG1737|consen 288 ESEQRIRLQEALSALENQNTDLEVALRRAH 317 (799)
T ss_pred hhhhhhhhhhHHHHHHhhhhhHHHHHhHhh
Confidence 566788999999999999999988876554
No 476
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.70 E-value=5.7e+02 Score=27.85 Aligned_cols=87 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH------HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy2772 483 RELSRVRSILAHNSKKLEETVAA------NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGD 556 (746)
Q Consensus 483 ~eLsrVRaeLSrnSkELE~twaE------yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvgg 556 (746)
.||.++...+.-.-++|++.-.. +...|.+-...+.+|..... +-..++.||.+.+.=+..
T Consensus 159 ~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~-------------ELe~~~EeL~~~Eke~~e 225 (269)
T PF05278_consen 159 KDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKE-------------ELEELEEELKQKEKEVKE 225 (269)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccc
Q psy2772 557 LQRQRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 557 LsrQRqeLs~qVrqLt~~s~~l~~qi 582 (746)
++.+=.+....+.+|-.++..|.+-|
T Consensus 226 ~~~~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 226 IKERITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.66 E-value=8e+02 Score=24.72 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 543 LEAELRRVQALVGDLQRQRQELSAQVKQ 570 (746)
Q Consensus 543 LekELwRIQdVvggLsrQRqeLs~qVrq 570 (746)
++.+-.+-++=+..|.++-+.|.++..+
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566677777777777777776654
No 478
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.57 E-value=1.1e+02 Score=27.65 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=31.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772 436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN 506 (746)
Q Consensus 436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy 506 (746)
++.-+..|..--|.||+++..-.-.......--..++++-.-+.-|..+|-...+.. .+||.+-+|-
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~----~~Le~~~~Ev 72 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARA----NRLEEANREV 72 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHH----HHHHHHHHHH
Confidence 344444445555555555544433333333334444555555555555555544443 3445544443
No 479
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.43 E-value=9.1e+02 Score=25.29 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy2772 549 RVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582 (746)
Q Consensus 549 RIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi 582 (746)
..++.+.+++.+-+++..+|.+|..+...|..+|
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=22.31 E-value=2.9e+02 Score=31.78 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=8.9
Q ss_pred ccCCCCC-CcccccCCC
Q psy2772 125 WSSGPGS-TGVAGKSAQ 140 (746)
Q Consensus 125 ~~~~~~~-~~~~~~~~~ 140 (746)
|.-.+|. .|+.|.+..
T Consensus 340 l~i~~Ge~~~l~G~NGs 356 (635)
T PRK11147 340 AQVQRGDKIALIGPNGC 356 (635)
T ss_pred EEEcCCCEEEEECCCCC
Confidence 4445663 567776543
No 481
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=22.18 E-value=5.8e+02 Score=23.00 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
-.-.|...|-.+|.|||+.-=+-+-|.+=.+||=.|...+|..|.
T Consensus 23 E~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 23 ENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 345566778888888888888888889999999999888888876
No 482
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.92 E-value=9.4e+02 Score=25.43 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHH
Q psy2772 446 AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVL 516 (746)
Q Consensus 446 DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~L 516 (746)
-.|.|...+..+.+.++..-. =..+|++..+=..+|.+|-..|..+...-+..+.+++.-+.--.||..|
T Consensus 10 ~~d~lq~~i~~as~~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 10 YMDSLQETIFTASQALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444332 3456666666677777777777766666666666666666666666554
No 483
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=2.8e+02 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772 497 KKLEETVAANARLESELVVLRQKLQ 521 (746)
Q Consensus 497 kELE~twaEyaRLE~EV~~LRqkLQ 521 (746)
++|...-.+..+||+.|..|.+++|
T Consensus 83 ~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 83 SEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888889999999998888876
No 484
>KOG2391|consensus
Probab=21.79 E-value=2.6e+02 Score=31.57 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHH-------HHHHHHHHH
Q psy2772 477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESEL-------VVLRQKLQW 522 (746)
Q Consensus 477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV-------~~LRqkLQa 522 (746)
++--+|++|.|...+|....+||+. +-.+||+++ ++|+.+.++
T Consensus 229 ~~~aeq~slkRt~EeL~~G~~kL~~---~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 229 RLQAEQESLKRTEEELNIGKQKLVA---MKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3556788999999999999999874 556777765 466777776
No 485
>KOG4593|consensus
Probab=21.65 E-value=1.6e+03 Score=27.78 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy2772 491 ILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDL 557 (746)
Q Consensus 491 eLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggL 557 (746)
+|.+.+++|-.-.-|-.+||+.+.+++..+-..++++.+ .-.|+.|+.+.|.-++-+
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~t----------v~~LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRET----------VGLLQEELEGLQSKLGRL 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHHH
Confidence 445555666666777788888888888888877765443 223555555555544443
No 486
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.59 E-value=1.3e+02 Score=27.67 Aligned_cols=59 Identities=36% Similarity=0.443 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSR-VRSILAHNSKKLEETVAANARLESELVVLRQ 518 (746)
Q Consensus 445 ~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsr-VRaeLSrnSkELE~twaEyaRLE~EV~~LRq 518 (746)
.+-|.||..|...+.+++... .++=-++|+. -|..|- +|++..-.--...|.++..||+
T Consensus 5 ~eId~lEekl~~cr~~le~ve------------~rL~~~eLs~e~R~~lE---~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVE------------SRLRRRELSPEARRSLE---KELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHH------------HHHcccCCChHHHHHHH---HHHHHHHHHhhccHHHHHHHHH
Confidence 345556666655555554332 2222233333 233333 5555555666677777777776
No 487
>PF15393 DUF4615: Domain of unknown function (DUF4615)
Probab=21.56 E-value=1.4e+02 Score=28.94 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHHHHH-HHHHHHHHHHH------HHHHHHHHHHHHHhhhcccc
Q psy2772 542 ALEAEL-RRVQALVGDLQ------RQRQELSAQVKQLTEKSNSL 578 (746)
Q Consensus 542 qLekEL-wRIQdVvggLs------rQRqeLs~qVrqLt~~s~~l 578 (746)
+++.|| |=||+|--||+ +|.+|...+++.|.....-|
T Consensus 2 qfe~EL~WCI~QLelgl~~~k~t~kq~ee~~k~i~~L~S~k~pl 45 (124)
T PF15393_consen 2 QFERELDWCIQQLELGLQRQKLTPKQIEEASKAIRTLKSNKAPL 45 (124)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCcc
Confidence 456666 77777777776 56677777777777544443
No 488
>PRK04406 hypothetical protein; Provisional
Probab=21.33 E-value=5.8e+02 Score=22.61 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772 473 RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR 524 (746)
Q Consensus 473 Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr 524 (746)
++++|.++++ ..++.+-+-|.+.++|+..|..|++.|.+..
T Consensus 19 ~lAfQE~tIe-----------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 19 QLAFQEQTIE-----------ELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556665554 4556667778888999999999999997643
No 489
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.30 E-value=6.5e+02 Score=23.17 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=36.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772 506 NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTE 573 (746)
Q Consensus 506 yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~ 573 (746)
+++|+.+...+-+.++.|-. ....|..-+-..+.+|..++++.+++..+..+..+
T Consensus 27 i~~L~a~n~~q~~tI~qq~~-------------~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e 81 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQED-------------ANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556654432 23336666777889999999999998877765554
No 490
>TIGR01844 type_I_sec_TolC type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa).
Probab=21.26 E-value=6.5e+02 Score=25.97 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=17.1
Q ss_pred hhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHH
Q psy2772 439 ICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERY 474 (746)
Q Consensus 439 kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi 474 (746)
.+..+++..+.++..+...+.+.+....++..+-++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~s~~dl~~a 163 (415)
T TIGR01844 128 ILALAEANLAALKEQLDLARARFDVGLGTRTDVLQA 163 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 344444444555555555555555555444333333
No 491
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.22 E-value=7.2e+02 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.079 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh
Q psy2772 428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHK 460 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq 460 (746)
++.+=+..++.++..+++-.++||.=|..+.+.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556777777888888888888877777644
No 492
>KOG0018|consensus
Probab=21.18 E-value=1.4e+03 Score=29.54 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=27.9
Q ss_pred hhhhHH-hHHHHHHHHH----hhhccCCChhhhHHHHHHHHhcccccc
Q psy2772 191 SYVYYC-VLSAYIRYVS----ARLADLETPKRMEHLQKLEELKRHLVE 233 (746)
Q Consensus 191 ~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~G 233 (746)
-|.+-| ..-.|-|-|. .-.-|-++--+-+.+.+|+.+++-|-+
T Consensus 77 ~Y~~~dg~~~~F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkA 124 (1141)
T KOG0018|consen 77 KYEEGDGETRRFTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKA 124 (1141)
T ss_pred eeecCCchhhhhhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeee
Confidence 455666 5566666553 234566777777888888877766644
No 493
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.17 E-value=5.7e+02 Score=29.99 Aligned_cols=124 Identities=9% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH--hHhhhccCCChHHHHHHHHHHHHHHH---
Q psy2772 409 VSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSL--RHKMHGVHASPAEVERYRRQQRLLER--- 483 (746)
Q Consensus 409 ~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L--~qqME~~~dqPa~~EKi~~QQrlLE~--- 483 (746)
++.+.+...|++--|.+.--+-. ++.++.-+.+++-......+...| +++++.|..+-.++++ .
T Consensus 141 ~~~~~~~lp~~~eil~~~~L~T~--~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~---------~~ik 209 (555)
T TIGR03545 141 LKKVDSQLPDPRALLKGEDLKTV--ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK---------KDIK 209 (555)
T ss_pred hccccccCCCHHHHhccCCCCcH--HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh---------ccCC
Q ss_pred ---HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772 484 ---ELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555 (746)
Q Consensus 484 ---eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg 555 (746)
++...-.++.++-++++..-+.+..|=+||...+..|+.+... -+++=+.++.|+....+
T Consensus 210 ~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~------------lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 210 NPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAE------------LKKAPQNDLKRLENKYA 272 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------------HHhccHhHHHHHHHHhC
No 494
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=9.5e+02 Score=26.15 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=42.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772 424 SRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503 (746)
Q Consensus 424 Sr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw 503 (746)
||.--...|+.-=-++|.++++||..||..=..+..+++..- ++...+..|+..|+.+...--..++..-.+.-.+-
T Consensus 134 sRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~---al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~ 210 (265)
T COG3883 134 SRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLV---ALQNELETQLNSLNSQKAEKNALIAALAAKEASAL 210 (265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444445556666667788888888888876555554444332 33444444555555555444444444433333333
Q ss_pred H
Q psy2772 504 A 504 (746)
Q Consensus 504 a 504 (746)
+
T Consensus 211 ~ 211 (265)
T COG3883 211 G 211 (265)
T ss_pred H
Confidence 3
No 495
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=21.08 E-value=5.8e+02 Score=23.84 Aligned_cols=36 Identities=19% Similarity=-0.026 Sum_probs=18.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy2772 419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENAL 454 (746)
Q Consensus 419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL 454 (746)
.+.+...+-.+-+-++..+.+|..|.+.++..+..+
T Consensus 18 ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~ 53 (146)
T PRK07720 18 KEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAK 53 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555444
No 496
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=21.04 E-value=8.6e+02 Score=24.49 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhh--hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772 428 IASKLHSRGRNICSVQGQ--AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA 505 (746)
Q Consensus 428 e~dKilqelE~kLq~Lk~--DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE 505 (746)
++++|+++-+..-..+++ ..+..+.+..... +.+..+..|.+.|+..++.....+-..+ |++-..+
T Consensus 42 qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~----------~ll~~~~~~~e~l~~~l~~~~~~ll~~a--l~~lL~e 109 (191)
T PF06188_consen 42 QAEQILQQAEEEAEALLEQAYEQAEAQFWQQAN----------ALLQEWQQQREQLLQQLEEQAEELLSQA--LERLLDE 109 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHc
Q ss_pred HhhhHHHHHHHHHHHHHHHh
Q psy2772 506 NARLESELVVLRQKLQWSRR 525 (746)
Q Consensus 506 yaRLE~EV~~LRqkLQaQr~ 525 (746)
...-|.--..+|+-+..+.+
T Consensus 110 ~~~~qrv~aLlr~l~~~~~~ 129 (191)
T PF06188_consen 110 TPDQQRVAALLRQLLASQRQ 129 (191)
T ss_pred CCchHHHHHHHHHHHHhccc
No 497
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.01 E-value=8.5e+02 Score=24.43 Aligned_cols=86 Identities=10% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHH
Q psy2772 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA-NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL 547 (746)
Q Consensus 469 a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE-yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekEL 547 (746)
..++.+...+...+.-......+|+...+|..+.-.| -++|+.|...=|.++.+.+.+ . |..|+
T Consensus 48 ~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~--~-------------~~~~~ 112 (155)
T PRK06569 48 DNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN--S-------------INQNI 112 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772 548 RRVQALVGDLQRQRQELSAQVKQLT 572 (746)
Q Consensus 548 wRIQdVvggLsrQRqeLs~qVrqLt 572 (746)
..|-.+.. .-|.+.+.++-+|+
T Consensus 113 ~~~~~~~~---~~~~~~~~~~i~~~ 134 (155)
T PRK06569 113 EDINLAAK---QFRTNKSEAIIKLA 134 (155)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHH
No 498
>KOG3091|consensus
Probab=20.98 E-value=1.1e+03 Score=27.95 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHh--hhccCCC-hHHHHHHHHHHHHHHHHHHHHH
Q psy2772 413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHK--MHGVHAS-PAEVERYRRQQRLLERELSRVR 489 (746)
Q Consensus 413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qq--ME~~~dq-Pa~~EKi~~QQrlLE~eLsrVR 489 (746)
||++.-+-.++++++ ..=+..--.+.+.-.+.++.=++.|-++..+ +.++.-. -..-|+++.|-+.|..+|..=-
T Consensus 354 r~ri~~i~e~v~eLq--k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pn 431 (508)
T KOG3091|consen 354 RIRINAIGERVTELQ--KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPN 431 (508)
T ss_pred HHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChH
Q ss_pred HHHHhhhHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 490 SILAHNSKKLEETVAA--NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ 567 (746)
Q Consensus 490 aeLSrnSkELE~twaE--yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q 567 (746)
..=+|+..=||..=+- -.+++.++-+-.+++++++++ |..|..+|..++.=|.+.-..+.
T Consensus 432 q~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~----------------lt~~~e~l~~Lv~Ilk~d~edi~-- 493 (508)
T KOG3091|consen 432 QLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEH----------------LTQEQEALTKLVNILKGDQEDIK-- 493 (508)
T ss_pred HHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHH----------------HHHHHHHHHHHHHHHHhHHHHHH--
Q ss_pred HHHHhh
Q psy2772 568 VKQLTE 573 (746)
Q Consensus 568 VrqLt~ 573 (746)
.+|.|
T Consensus 494 -~~l~E 498 (508)
T KOG3091|consen 494 -HQLIE 498 (508)
T ss_pred -HHHHh
No 499
>PF02321 OEP: Outer membrane efflux protein; InterPro: IPR003423 The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm. Examples include the Escherichia coli TolC outer membrane protein, which is required for proper expression of outer membrane protein genes; the Rhizobium nodulation protein; and the Pseudomonas FusA protein, which is involved in resistance to fusaric acid.; GO: 0005215 transporter activity, 0006810 transport; PDB: 3PIK_A 1YC9_A 3D5K_C 1WP1_B 2XMN_C 2WMZ_B 1EK9_B 2VDD_C 1TQQ_A 2VDE_B ....
Probab=20.87 E-value=5.6e+02 Score=22.28 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772 433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503 (746)
Q Consensus 433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw 503 (746)
+......+..+++..+.++..+.....+.+....+....-.+..+....+.++...+..+...-.+|+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 187 (188)
T PF02321_consen 117 LLQAQEQLEIAEEQLELAKEQLEIAEKRYEAGLISELDLLQAQAQLLQAQLQLIQAQNDLQIALAQLKRLL 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>KOG4809|consensus
Probab=20.76 E-value=1.6e+03 Score=27.36 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772 429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR 508 (746)
Q Consensus 429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR 508 (746)
.|+=|+++|--|.+-+++--++|+-|--.|......+-+|...+.|++ ||.+-+.++-++..+-.+--+-..=.+.
T Consensus 378 ~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~----le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 378 RDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQ----LEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHH---------------------HHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772 509 LESE---------------------LVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ 567 (746)
Q Consensus 509 LE~E---------------------V~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q 567 (746)
.|++ |.-|+-+=|.... ..+++=.|+.|=+|+|.+=|.+=|
T Consensus 454 veneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekk-------------k~aq~lee~rrred~~~d~sqhlq----- 515 (654)
T KOG4809|consen 454 VENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKK-------------KNAQLLEEVRRREDSMADNSQHLQ----- 515 (654)
T ss_pred HHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHH-------------HHHHHHHHHHHHHhhhcchHHHHH-----
Q ss_pred HHHH
Q psy2772 568 VKQL 571 (746)
Q Consensus 568 VrqL 571 (746)
++.|
T Consensus 516 ~eel 519 (654)
T KOG4809|consen 516 IEEL 519 (654)
T ss_pred HHHH
Done!