RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2772
(746 letters)
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 116 bits (292), Expect = 6e-27
Identities = 54/96 (56%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
LK N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I FK
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKS 302
Query: 313 QGRALLGYSHSSGREVSKSVVRH---TKHMPSPAIV 345
++ V T H PS AI
Sbjct: 303 SKFGCRDPVRTNFDAFPDKVAIQLNDT-H-PSLAIP 336
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 114 bits (288), Expect = 2e-26
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
L NDGD+++A AE +++VLYPNDN F GK+LRL Q+YF CA ++ I
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHL 289
Query: 313 QGRAL 317
GR L
Sbjct: 290 AGRKL 294
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 114 bits (287), Expect = 3e-26
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
N + A+++R +I RVLYPND + GK+LR++Q+YF +A+LQ +
Sbjct: 220 YDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLA 279
Query: 313 QGRAL 317
+ L
Sbjct: 280 HHKDL 284
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 112 bits (283), Expect = 1e-25
Identities = 34/65 (52%), Positives = 41/65 (63%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
L N+GDY +V + AE+I+ VLYPNDN GKELRLKQ+YF CAA+L I FK
Sbjct: 290 LNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASLHDILRRFKK 349
Query: 313 QGRAL 317
R
Sbjct: 350 SKRPW 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 7e-12
Identities = 88/560 (15%), Positives = 164/560 (29%), Gaps = 218/560 (38%)
Query: 198 LSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQV-------SITFNLTERNEK 250
+ ++ YVS+ + + Q + L L E E ++ L + N+
Sbjct: 61 VGKFLGYVSSLVEPSKVG------QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 251 IPLK----FVNDGDYIQA--VLDRNLAENISRVLYP--NDNN------FGG--------K 288
+K N YI A + R + + L+ + N FGG +
Sbjct: 115 TLVKTKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 289 EL--------------------RLKQ------------------------------EYFM 298
EL L + + ++
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 299 CAATLQVISLP---------FKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTG 349
+ IS P + + LLG++ R K H++ + + +A T
Sbjct: 232 LSIP---ISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 350 SGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPV 409
S S F SV I++L + +G + + P P
Sbjct: 288 SWE------S-----------FFVSVRKAITVL--FFIG-------VRCYEAYPNTSLPP 321
Query: 410 SPIRIRI----GV---M--IHAISRDQIASKL---------HSR-------GRNICSVQG 444
S + + GV M I ++++Q+ + + G V G
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILA-----HNSKKL 499
+ +L L + A P+ +++ R ER+L L H S L
Sbjct: 382 PPQ-----SLYGLNLTLRKAKA-PSGLDQSR--IPFSERKLKFSNRFLPVASPFH-SHLL 432
Query: 500 EETVAANARLESELVVLRQKLQWSRRE-------VCNGTASLSNGPSVAALEAELRRVQA 552
A+ + +LV + + ++ ++ +G+
Sbjct: 433 VP---ASDLINKDLV--KNNVSFNAKDIQIPVYDTFDGS--------------------- 466
Query: 553 LVGDLQRQRQELSAQ-VKQLT------EKSNSLSQQ--IRPGPTGVAVAGK--SVNRPGP 601
DL+ +S + V + E + + GP G + G N+ G
Sbjct: 467 ---DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG- 522
Query: 602 TGV----AGKVSKSGLDPTG 617
TGV AG + + D G
Sbjct: 523 TGVRVIVAGTLDINPDDDYG 542
Score = 37.7 bits (87), Expect = 0.017
Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 73/199 (36%)
Query: 3 LVV---LRQKLQWSRREVCNGTA--------SLSNGP----------SVAALEAELRRVQ 41
L + ++++Q N SL NG S+ L LR+ +
Sbjct: 339 LSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 42 ALVGDLQ-----RQRQ-ELSAQV---------KQLTEKSNSLSQQIRPGPTGVAGKSAQ- 85
A G Q +R+ + S + L S+ +++ + K Q
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 86 --GSTSPSGRSTAAETGTERTGQTADGEI--QLFESADQARTHWSS------------GP 129
T G++ + G I ++ + + W + GP
Sbjct: 458 PVYDT---------FDGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 130 GSTGVAG------KSAQGS 142
G G +G ++ G+
Sbjct: 507 G--GASGLGVLTHRNKDGT 523
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 7e-09
Identities = 75/603 (12%), Positives = 170/603 (28%), Gaps = 192/603 (31%)
Query: 36 ELRRVQALVGDLQRQRQELSAQVKQLTEKS-----NSLSQQIRPGPTGVAGKSAQGSTSP 90
+ L L +++E V++ E+ L I+ P
Sbjct: 60 AVSGTLRLFWTLLSKQEE---MVQKFVEEVLRINYKFLMSPIKTEQRQ-----------P 105
Query: 91 SGRSTAAETGTERTGQTADGEIQLF--------ESADQARTH---WSSGPGST--GVAGK 137
S + +R + Q+F + + R GV G
Sbjct: 106 SMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG- 160
Query: 138 SAQGSTSPSGRST-AAET-GTERTGQTADGEIQLFESADQARTHWSNPG-------LMCI 188
SG++ A + + + D +I W N ++ +
Sbjct: 161 --------SGKTWVALDVCLSYKVQCKMDFKI-----------FWLNLKNCNSPETVLEM 201
Query: 189 LSSYVY-----YCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVEL----EKQVS 239
L +Y + S + + R+ ++ R L K + + L+ L +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAW 259
Query: 240 ITFN------LTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPND------NNFGG 287
FN LT R +++ F++ L ++ S L P++
Sbjct: 260 NAFNLSCKILLTTRFKQV-TDFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDC 313
Query: 288 KELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVR--HTKHMPSPAIV 345
+ L +E + + +S+ + + + KH+ +
Sbjct: 314 RPQDLPRE--VLTTNPRRLSI---------------IAESIRDGLATWDNWKHVNCDKLT 356
Query: 346 ATTGSGPFLGYPKSDNIILPRKQHLFLDSVIW----YIS--LLEVYRLGGPLACGPWKVH 399
S L + + +F ++ +I LL + W
Sbjct: 357 TIIES--SLNVLEPAEY-----RKMFDRLSVFPPSAHIPTILLSLI----------W--- 396
Query: 400 AELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRH 459
++ VM + +KLH V+ Q KE
Sbjct: 397 FDVIKSD-----------VM-------VVVNKLHKY----SLVEKQPKES--------TI 426
Query: 460 KMHGVH---ASPAE---------VERYRRQQRLLERELSRVR------SILAHNSKKLEE 501
+ ++ E V+ Y + +L S + H+ K +E
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE- 485
Query: 502 TVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQR 561
+ + ++ ++ +++ + + + + S+ +L+ + + D +
Sbjct: 486 ----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 562 QEL 564
+ L
Sbjct: 542 ERL 544
Score = 51.0 bits (121), Expect = 1e-06
Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 85/260 (32%)
Query: 448 EMLENALGS--LRHKMHGVHASPAEVERYRRQQRLLERELSR-----VRSILAHNSKKLE 500
+M ++ L + H + S V R L + V +L N K L
Sbjct: 40 DMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQ 560
+ R S + ++ +R+ L N V
Sbjct: 96 SPIKTEQRQPS----MMTRMYIEQRDR------LYNDNQV-------------FAKYNVS 132
Query: 561 RQELSAQVKQLTEKSNSLSQQIRPGPTGVAV-----AGKSVNRPGPTGVAGKVSKSGLDP 615
R + +L + L ++RP V + +GK+ VA V S
Sbjct: 133 RLQ---PYLKLRQA---L-LELRPAK-NVLIDGVLGSGKTW-------VALDVCLS---- 173
Query: 616 TGVAVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAI 675
V ++ ++ W + + ET L+M L I
Sbjct: 174 --YKVQCKMDF------KIF-WLN----------LKNCNSP-----ETVLEMLQKLLYQI 209
Query: 676 ESPCISYPSSPQHMTSSPLP 695
+ + S H ++ L
Sbjct: 210 DPN---WTSRSDHSSNIKLR 226
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 51.0 bits (122), Expect = 1e-06
Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 10/158 (6%)
Query: 425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERE 484
++ + KL + +A+EM + +H A +E + + L+ E
Sbjct: 894 KNLLQEKLQAETEL----YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949
Query: 485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALE 544
+++ + ++LEE AA +L+ E V K++ ++ + + L
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI----LIMED--QNNKLT 1003
Query: 545 AELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
E + ++ V DL E + K LT+ N I
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Score = 49.1 bits (117), Expect = 5e-06
Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
+ K E+ + L ++ S E+E+ +R+ LE E S + +A ++ E A
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRK---LEGESSDLHEQIAELQAQIAELKA 1088
Query: 505 ANARLESELVVLRQKLQWSRREVCNGTASLSNGPS-VAALEAELRRVQALVGDLQRQR-- 561
A+ E EL +L+ + N + S ++ L+ +L +A ++Q+
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 562 --QELSAQVKQLTEKSNSLSQQIR 583
+EL A +L + ++ + Q
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQE 1172
Score = 40.6 bits (95), Expect = 0.002
Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 16/138 (11%)
Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
+ K LE L ++ + A ++ + Q E EL + L + + +
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQA---QIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 505 ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
LES + L++ L+ + E + R + + L+ + ++
Sbjct: 1117 KIRELESHISDLQEDLESEKAA-------------RNKAEKQKRDLSEELEALKTELEDT 1163
Query: 565 SAQVKQLTEKSNSLSQQI 582
E S +
Sbjct: 1164 LDTTATQQELRGSDYKDD 1181
Score = 31.3 bits (71), Expect = 1.5
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELS 486
++L + + +E LE+ + L+ + A+ + E+ Q+R L EL
Sbjct: 1099 AALARLEDETSQKNNALKKIRE-LESHISDLQEDLESEKAARNKAEK---QKRDLSEELE 1154
Query: 487 RVRSILAHNSKKLEETVAANARLESELVVLRQKLQW 522
++ +LE+T+ A + +
Sbjct: 1155 ALK-------TELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 30.2 bits (68), Expect = 3.5
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 1 SELVVLRQKLQWSRREVCNGTASLSNGPS-VAALEAELRRVQALVGDLQRQR----QELS 55
EL +L+ + N + S ++ L+ +L +A ++Q+ +EL
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154
Query: 56 AQVKQLTEKSNSLSQQIR 73
A +L + ++ + Q
Sbjct: 1155 ALKTELEDTLDTTATQQE 1172
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 43.6 bits (102), Expect = 7e-05
Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 5/115 (4%)
Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
E+ ++ R LE EL ++ L+ N RL+ E+ L++KL+ +
Sbjct: 31 DELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD---NQRLKYEVEALKEKLEHQYAQSY 87
Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
+ L + ++ A ++ V +L++ +L + Q++
Sbjct: 88 KQVSVLED--DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140
Score = 33.9 bits (77), Expect = 0.11
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
E ++ ++ R +L E + LE+EL + + R++
Sbjct: 11 ETAYWKELSMKYKQSFQEAR-------DELVEFQEGSRELEAELEAQLVQAEQRNRDLQA 63
Query: 530 GTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
L +EA +++ +Q L + Q L + +R
Sbjct: 64 DNQRLKY-----EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112
Score = 33.2 bits (75), Expect = 0.16
Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
+ L+ + +L+ K+ + + +Q +LE +LS+ R+I K + E
Sbjct: 63 ADNQRLKYEVEALKEKLE------HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116
Query: 505 ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
AN LE L+ + + A LE+EL ++L+ +QR + E
Sbjct: 117 ANDDLERAKRATIMSLEDFEQRLNQAIERN------AFLESELDEKESLLVSVQRLKDEA 170
Query: 565 SAQVKQLTEKSNSLSQQIR 583
+ L ++ +Q
Sbjct: 171 ----RDLRQELAVRERQQE 185
Score = 27.8 bits (61), Expect = 9.8
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 507 ARLESELVVLRQKLQWSRREVCNGTASL-----SNGPSVAALEAELRRVQALVGDLQRQR 561
+ L+ E ++ ++ L + A LEA+L + + DLQ
Sbjct: 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN 65
Query: 562 QELSAQVKQLTEKSNSLSQQ 581
Q L +V+ L EK Q
Sbjct: 66 QRLKYEVEALKEKLEHQYAQ 85
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 42.9 bits (100), Expect = 7e-05
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 9/136 (6%)
Query: 450 LENALGSLRHKMHGVHASPAEVERYRRQQR-------LLERELSRVRSILAHNSKKLEET 502
LE L + A+ + + + E+ R+R +A ++ +
Sbjct: 18 LEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA 77
Query: 503 VAANARLESELVVLRQKLQWSRREVCNG--TASLSNGPSVAALEAELRRVQALVGDLQRQ 560
+L E+ L L + + L +LR L+ L Q
Sbjct: 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137
Query: 561 RQELSAQVKQLTEKSN 576
+ L + L +S
Sbjct: 138 LKNLKKVMHSLDNEST 153
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 40.1 bits (93), Expect = 7e-04
Identities = 15/114 (13%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
R R+ + + +S++ S+ ++ + ++ + + L+ L+ RR+ +
Sbjct: 28 TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH 87
Query: 530 GTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
+ + L+A + +Q V L+ +++ + K+ + N ++
Sbjct: 88 DSEM------IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135
Score = 31.6 bits (71), Expect = 0.45
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 13/103 (12%)
Query: 481 LERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSV 540
L+++L +L S ++ + + L + +
Sbjct: 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERN------------- 57
Query: 541 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
LE + LQ + +E L +I
Sbjct: 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARIT 100
Score = 28.5 bits (63), Expect = 5.3
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 38/140 (27%)
Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
+ +LEN+ + L+ L R H+S+ + + A
Sbjct: 55 ERNRILENSKSQT-----------------DKDYYQLQAILEAERRDRGHDSEMIGDLQA 97
Query: 505 ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
L+ E+ L+ L+ +E E + Q ++ ++++ L
Sbjct: 98 RITSLQEEVKHLKHNLE--------------------KVEGERKEAQDMLNHSEKEKNNL 137
Query: 565 SAQVK-QLTEKSNSLSQQIR 583
+ +L L Q++
Sbjct: 138 EIDLNYKLKSLQQRLEQEVN 157
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 41.6 bits (98), Expect = 9e-04
Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
VERY++ LE ++ +++ + +K+ + + LE +KL+ S E
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR-SDVERLR 973
Query: 530 GTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
+ + +Q + L+++ + + K + E ++ +
Sbjct: 974 MSEE-----EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Score = 41.6 bits (98), Expect = 0.001
Identities = 25/176 (14%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 412 IRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEV 471
+R + + + +K R S+ Q A + +
Sbjct: 838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897
Query: 472 ERY--RRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
R +R+ + L+ E V ++ ++ + LE++++ L++K+ +E +
Sbjct: 898 RRMMAKRELKKLKIEARSV--------ERYKK---LHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 530 GTASLSNGPSVAALEAELRRVQALVGDLQRQRQE---LSAQVKQLTEKSNSLSQQI 582
++N E ++++ V L+ +E + +V L E+ L +++
Sbjct: 947 LLEKMNN--LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 40.9 bits (95), Expect = 0.001
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 25/140 (17%)
Query: 449 MLENALGSLRHKMHGVHASPAEVERYRRQQRLLER------ELSRVRSILAHNSKKLEET 502
++ + LR + H H E YRR + L E S+ S+ K E
Sbjct: 278 LIRVNMEDLREQTHTRH-----YELYRRCK-LEEMGFKDTDPDSKPFSLQETYEAKRNEF 331
Query: 503 VAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL-RRVQALVGDLQRQR 561
+ + E E+ RQ +E + E EL + L Q ++
Sbjct: 332 LGELQKKEEEM---RQMFVQRVKE---------KEAELKEAEKELHEKFDRLKKLHQDEK 379
Query: 562 QELSAQVKQLTEKSNSLSQQ 581
++L + K L ++ N+ Q+
Sbjct: 380 KKLEDKKKSLDDEVNAFKQR 399
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 36.8 bits (85), Expect = 0.005
Identities = 18/114 (15%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
+ ++ ++ E +R++ L + + +E L E L+ ++Q + + +
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66
Query: 530 GTASLSN-GPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
+ LEA+++ + + D + EL+A+ ++L ++ + L + I
Sbjct: 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120
Score = 30.2 bits (68), Expect = 0.91
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 30 VAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 72
+A+++ E R++ + + +R+EL ++ L ++ N L Q+
Sbjct: 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV 57
Score = 27.5 bits (61), Expect = 7.1
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 31 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 72
LEA+++ + + D + EL+A+ ++L ++ + L + I
Sbjct: 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 37.7 bits (87), Expect = 0.011
Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
A+ + + + LE EL ++ L +L++ A + +L + +K + +V
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86
Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
+ + E EL R Q + ++ +E + + + +
Sbjct: 87 SLNRRIQL------FEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 34.7 bits (79), Expect = 0.038
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 475 RRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASL 534
R+ +L+E EL R + LA +KLEE A E + V+ + Q +
Sbjct: 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEK-------- 53
Query: 535 SNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK 574
+ E +L+ + + D R+ +E++ ++ +
Sbjct: 54 -----MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 88
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 36.1 bits (82), Expect = 0.048
Identities = 16/162 (9%), Positives = 57/162 (35%), Gaps = 8/162 (4%)
Query: 422 AISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLR------HKMHGVHASPAEVERYR 475
++ + + + + + +E+L+ +L L + + +
Sbjct: 429 SVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSN 488
Query: 476 RQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLS 535
+ L E + R++L + + +V+L + + +A+ +
Sbjct: 489 ELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAI--PSANPA 546
Query: 536 NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 577
+ + L+ + + + +++++R+ L +K + S
Sbjct: 547 KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTS 588
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 34.6 bits (78), Expect = 0.049
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Query: 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGT 531
R R + + L+ L + + K+ EE A LE + L KL+ +++
Sbjct: 25 IRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAK 84
Query: 532 ASLSNGPSV--AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
S S LE + ++ + R +A K+L EK +L I
Sbjct: 85 ESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAI 137
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 34.1 bits (78), Expect = 0.060
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGD 556
+++ + + LE+E +LQ ++ L + + + + V A
Sbjct: 16 QQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQT 75
Query: 557 LQRQRQELSAQVKQLTEKSNSLSQQIRP 584
++ Q + +SN ++
Sbjct: 76 FAQKAQAFE---QDRARRSNEERGKLVT 100
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 35.2 bits (81), Expect = 0.076
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPT 602
+ E+R ++ + Q QELS + + L QQ+ + + +
Sbjct: 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKIS 69
Query: 603 GVAGK----VSKSGLDPTGV 618
+ GK V +G +G+
Sbjct: 70 PITGKDCQQVVDNGGKDSGL 89
Score = 33.6 bits (77), Expect = 0.19
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 33 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 72
+ E+R ++ + Q QELS + + L QQ+
Sbjct: 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 33.4 bits (76), Expect = 0.19
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 14/120 (11%)
Query: 464 VHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS 523
+ A +E + L + + ++ + L + + + + L
Sbjct: 69 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYT----GAEILGL- 123
Query: 524 RREVCNGTASLSN--GPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ 581
+ L G + E+ R A +L L QV+Q + + L
Sbjct: 124 ---IDEKHRELPEDVGLDASTAESFHRVHTAFEREL----HLLGVQVQQFQDVATRLQTA 176
Score = 28.0 bits (62), Expect = 8.7
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 27 GPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ 71
G + E+ R A +L L QV+Q + + L
Sbjct: 136 GLDASTAESFHRVHTAFEREL----HLLGVQVQQFQDVATRLQTA 176
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 32.6 bits (74), Expect = 0.20
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGD 556
K+EE ++ N LE+E+ L++ L+ + A LE EL+ V +
Sbjct: 7 DKVEELLSKNYHLENEVARLKKLLERAEERAELSEGK------SAELEEELKTVTNNLKS 60
Query: 557 LQRQRQELSAQVKQLTEKSNSLSQQIR 583
L+ Q ++ S + + E+ LS +++
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLK 87
Score = 31.5 bits (71), Expect = 0.47
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 476 RQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLS 535
+ LE E++R++ +L ++ E + +A LE EL + L+ E S
Sbjct: 14 SKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLK--SLEAQAEKYS-- 69
Query: 536 NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
E E++ + + + + + + V +L + + L ++
Sbjct: 70 --QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115
Score = 29.9 bits (67), Expect = 1.4
Identities = 22/152 (14%), Positives = 59/152 (38%), Gaps = 18/152 (11%)
Query: 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE----RYRRQQRLL 481
+ +++ + + + +A E+ E L ++ V + +E +Y +++
Sbjct: 17 YHLENEVARLKKLLERAEERA-ELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKY 75
Query: 482 ERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVA 541
E E+ + L + E + +LE + L +L + +
Sbjct: 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK-------------YK 122
Query: 542 ALEAELRRVQALVGDLQRQRQELSAQVKQLTE 573
A+ E+++++ V +L + L +V +L +
Sbjct: 123 AISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 28.4 bits (63), Expect = 5.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 33 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 73
LE EL+ V + L+ Q ++ S + + E+ LS +++
Sbjct: 47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 87
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 32.1 bits (72), Expect = 0.21
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 16/131 (12%)
Query: 454 LGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESEL 513
LGSL +++ + A + L+ + + ++ L+ +++ A+
Sbjct: 3 LGSLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELR 62
Query: 514 VVLRQKLQWSRREVCNGTASLSNGPS----------------VAALEAELRRVQALVGDL 557
++ +EV + TASL + + L +LR L+ L
Sbjct: 63 TKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTL 122
Query: 558 QRQRQELSAQV 568
Q + L +
Sbjct: 123 TLQLKNLKKVM 133
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 31.8 bits (72), Expect = 0.22
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASL-----SNGPSVAALEAELRRVQ 551
++ + A N RL+ E+ L++KL+ + + L L +R ++
Sbjct: 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62
Query: 552 ALVGDLQRQRQELSAQVKQLTEKSNSL 578
DL+R ++ ++ ++ N
Sbjct: 63 QANDDLERAKRATIVSLEDFEQRLNQA 89
Score = 27.2 bits (60), Expect = 7.2
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRL----LERELSRVRSILAHNSKKLE 500
+ L + A ++ +Y R+ LER L ++L
Sbjct: 28 HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87
Query: 501 ETVAANARLESELV---VLRQKLQ 521
+ + NA LESEL L +Q
Sbjct: 88 QAIERNAFLESELDEKESLLVSVQ 111
>2wpq_A Trimeric autotransporter adhesin fragment; hydrophobic core, ION
coordination, protein export, TAA, membrane protein,
polar core; 1.85A {Salmonella enterica subsp}
Length = 99
Score = 31.0 bits (69), Expect = 0.36
Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 498 KLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDL 557
K+EE ++ +E+E+ +++ + + +V TA ++ + ++ + ++
Sbjct: 7 KIEEILSKIYHIENEIARIKKLIFDTNEKVDQNTADITT--NTNSINQNTTDIATNTTNI 64
Query: 558 QRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVA 590
LS +KQ+ +K + +I +A
Sbjct: 65 ----NNLSDSMKQIEDKIEEILSKIYHIENEIA 93
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 30.6 bits (69), Expect = 0.41
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ 521
++ + +Q R+ E +V L + L A+ ESE+ L +++Q
Sbjct: 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 30.6 bits (69), Expect = 0.49
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 448 EMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANA 507
E E + + E + +++ + E E+ + + +KLE+
Sbjct: 26 EQAEADKKQAEDRCKQLEE---EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82
Query: 508 RLESELVVLRQKLQ 521
E+E+ L +++Q
Sbjct: 83 DAEAEVASLNRRIQ 96
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 31.8 bits (72), Expect = 0.78
Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 464 VHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA---NARLESELVVLRQKL 520
+++ ++ + L + + ++ ++ L + + ++ K
Sbjct: 74 INSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKH 133
Query: 521 QWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQ 580
+ E+ G +E R D+ Q L QV+QL E + L
Sbjct: 134 KKLPEEL---------GRDQNTVETLQRMHTTFEHDI----QALGTQVRQLQEDAARLQA 180
Query: 581 Q 581
Sbjct: 181 A 181
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 31.8 bits (72), Expect = 0.97
Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 423 ISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLR-HKMHGVHASPAEVERYRRQQRLL 481
I+ DQ+ K+H G + + +++E +++ + L H S E+++ ++ L
Sbjct: 411 IAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ----L 466
Query: 482 ERELSRVRSILAHNSKKLEETVAANARLESELVV 515
+ E + S + L+ T + ++++
Sbjct: 467 KDETGELSSADEKRYRALKRTAERELLMNADVIC 500
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.4 bits (70), Expect = 1.3
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 62 TEKSNSLSQQIRPGPTGVAG-KSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQ 120
E + S G + + + SG S TG G + G ++
Sbjct: 248 NEITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPG-- 305
Query: 121 ARTHWSSGPGSTGVAGKSAQGSTSP----SGRSTAAETGTERTGQTADG 165
SSGPGSTG + G+ S G TGT G + G
Sbjct: 306 -----SSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERG 349
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; 2.20A {Hantaan virus}
Length = 113
Score = 29.3 bits (65), Expect = 1.5
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 496 SKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG 555
S +EE E +LV+ RQK++ + ++ L N ++ E +QA +
Sbjct: 21 SMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDEL-NKRTLTDREGVAVSIQAKID 79
Query: 556 DLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGV 589
+L+RQ + A K L ++ + PTGV
Sbjct: 80 ELKRQLADRIATGKNLGKEQD---------PTGV 104
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative-
strand viruses, antiparallel coiled coil, viral protein;
2.00A {Sin nombre virus}
Length = 96
Score = 28.5 bits (63), Expect = 2.2
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558
L+E E LV RQKL+ + R V + N ++ + A + ++ +G+L+
Sbjct: 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV-NKSTLQSRRAAVSALETKLGELK 65
Query: 559 RQRQELSAQVKQ 570
R+ +L A K
Sbjct: 66 RELADLIAAQKL 77
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 30.6 bits (69), Expect = 2.3
Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 423 ISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLR-HKMHGVHASPAEVERYRRQQRLL 481
I+ DQ+ K+H G + + +++E +++ + L H S E+++ ++ L
Sbjct: 235 IAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ----L 290
Query: 482 ERELSRVRSILAHNSKKLEETVAANARLESELVV 515
+ E + S + L+ T + ++++
Sbjct: 291 KDETGELSSADEKRYRALKRTAERELLMNADVIC 324
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 28.1 bits (63), Expect = 2.4
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 37 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 73
L + + ++R+ + L ++ L QQ+R
Sbjct: 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78
Score = 28.1 bits (63), Expect = 2.4
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 547 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
L + + ++R+ + L ++ L QQ+R
Sbjct: 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78
Score = 27.3 bits (61), Expect = 5.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 33 LEAELRRVQALVGDLQRQRQELSAQVKQL 61
+ + Q + DL+RQ L QV+ L
Sbjct: 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80
Score = 27.3 bits (61), Expect = 5.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 543 LEAELRRVQALVGDLQRQRQELSAQVKQL 571
+ + Q + DL+RQ L QV+ L
Sbjct: 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 28.0 bits (63), Expect = 2.6
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 470 EVERYRRQ-------QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ 518
E+ RRQ + +E E + + +KL+E + E+ L RQ
Sbjct: 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 56
Score = 28.0 bits (63), Expect = 3.0
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 24/86 (27%)
Query: 497 KKLEETVAANARLESEL-----VV--LRQKLQ--WSRREVCNGTASLSNGPSVAALEAEL 547
+++++ AR+E E + LR+KLQ +RE E L
Sbjct: 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE---------------EAENTL 51
Query: 548 RRVQALVGDLQRQRQELSAQVKQLTE 573
+ + V + R +L +V+ L E
Sbjct: 52 QSFRQDVDNASLARLDLERKVESLQE 77
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 2.10A {Salmonella typhimurium}
Length = 463
Score = 30.3 bits (67), Expect = 2.8
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 23 SLSNGP-SVAALEAELRRVQALV-------GDLQRQRQELSAQVKQLTEKSNSLSQQI 72
+L + AA +A + + + LV L+ Q ++++ + + N+ ++QI
Sbjct: 55 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQI 112
Score = 30.3 bits (67), Expect = 2.8
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 533 SLSNGP-SVAALEAELRRVQALV-------GDLQRQRQELSAQVKQLTEKSNSLSQQI 582
+L + AA +A + + + LV L+ Q ++++ + + N+ ++QI
Sbjct: 55 TLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQI 112
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
jelly- roll topology, structural protein; 1.36A
{Bacillus anthracis}
Length = 220
Score = 29.6 bits (66), Expect = 3.0
Identities = 25/94 (26%), Positives = 28/94 (29%), Gaps = 28/94 (29%)
Query: 75 GPTGVAGKSAQGSTSPSGRS--TAAETGTERTGQTADGEIQLFESADQARTHWSSGPGST 132
GPT T P+G + T T TG T G T
Sbjct: 9 GPTLPPIPPFTLPTGPTGPTGPTGPTGPTGPTGPT----------------------GDT 46
Query: 133 GVAGKSAQGSTSPSG--RSTAAETGTERTGQTAD 164
G G G T P+G T A T TG T
Sbjct: 47 GTTG--PTGPTGPTGPTGPTGATGLTGPTGPTGP 78
>3zxu_B CTF19; cell cycle, COMA complex, protein complex, cell division;
3.70A {Kluyveromyces lactis}
Length = 270
Score = 29.8 bits (66), Expect = 3.0
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 13 SRREVCNGTASLSNGPSVAALEA-ELRRVQALVGDLQRQRQELSAQVKQ--------LTE 63
R N + S+ V E +L ++Q +L RQR EL Q+ Q +
Sbjct: 13 ERNTGSNDSDEPSSHSDVIETEELKLIKLQEHKNNLLRQRSELLDQLSQTRVVEPRSVQL 72
Query: 64 KSNSLSQQIRPGPTGVAGKSAQGSTSPSGRSTAA 97
L + +R V+ S+Q S +P R +
Sbjct: 73 DDKLLLKLLRRNDNAVSD-SSQSSNNPLPRVLPS 105
>3iyn_N Protein IIIA, peripentonal hexon-associated protein; cryoem, 3D
reconstruction, FULL-ATOM model interaction network,
capsid protein, hexon protein; 3.60A {Human adenovirus
5}
Length = 585
Score = 30.2 bits (67), Expect = 3.0
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 635 YPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAIESPCISYPSSPQHMTSSPL 694
+ WDD +DS P E L S + S ++P+ SSP
Sbjct: 410 FLWDDIDDSVFSPQPQTLLELQQREQAEAALRKESFRRPSSLSD--LGAAAPRSDASSPF 467
Query: 695 PSSPTSTSIP 704
PS S +
Sbjct: 468 PSLIGSLTST 477
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.9 bits (68), Expect = 3.5
Identities = 11/69 (15%), Positives = 30/69 (43%)
Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTG 588
G + P + + ELR+++ + L+ +++ ++ V+ L ++ Q P
Sbjct: 61 KGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQS 120
Query: 589 VAVAGKSVN 597
+ G+ +
Sbjct: 121 LRARGREIR 129
Score = 29.5 bits (67), Expect = 4.0
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 19 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQL 61
G + P + + ELR+++ + L+ +++ ++ V+ L
Sbjct: 61 KGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative-
strand viruses, antiparallel coiled coil, viral protein;
1.15A {Sin nombre virus}
Length = 78
Score = 27.4 bits (60), Expect = 4.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ 558
L+E E LV RQKL+ + R V + N ++ + A + ++ +G+L+
Sbjct: 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV-NKSTLQSRRAAVSALETKLGELK 65
Query: 559 RQRQELSAQVK 569
R+ +L A K
Sbjct: 66 RELADLIAAQK 76
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.7 bits (62), Expect = 4.3
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 37 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 73
L++ A + +Q + Q+L ++ L ++ L ++
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83
Score = 27.7 bits (62), Expect = 4.3
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 547 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
L++ A + +Q + Q+L ++ L ++ L ++
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83
Score = 26.9 bits (60), Expect = 6.7
Identities = 7/29 (24%), Positives = 21/29 (72%)
Query: 33 LEAELRRVQALVGDLQRQRQELSAQVKQL 61
++AE +++ + L+++R++L +++QL
Sbjct: 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85
Score = 26.9 bits (60), Expect = 6.7
Identities = 7/29 (24%), Positives = 21/29 (72%)
Query: 543 LEAELRRVQALVGDLQRQRQELSAQVKQL 571
++AE +++ + L+++R++L +++QL
Sbjct: 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 29.8 bits (66), Expect = 4.8
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 420 IHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQR 479
I +I ++ R G++ + + V E E + + +
Sbjct: 802 IKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMK 861
Query: 480 LLERELSRVRSILAHNSKKLEE---TVAANARLESELVVLRQKLQ 521
++ +++ S NS +LEE + L ++ L++K+
Sbjct: 862 KIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKIS 906
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 27.2 bits (61), Expect = 5.4
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRRE 526
++ + + Q E +L + LA +A E E+ +R ++Q E
Sbjct: 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLA---EKEREMAEMRARMQQQLDE 57
Score = 26.8 bits (60), Expect = 6.9
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 441 SVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE 500
+Q Q E L L + E + RR ERE++ +R+ + + +
Sbjct: 7 QLQCQ-LAAKEAKLRDLEDSLA------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59
Query: 501 ETVAANARLESE 512
E + L+ E
Sbjct: 60 ELLDIKLALDME 71
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 29.2 bits (66), Expect = 5.4
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 32/102 (31%)
Query: 445 QAKEMLENALGSL---------RHKM-------HGVHASP-----------AEVER-YRR 476
+ + L +L K HG+ A P E +R +
Sbjct: 108 DSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 477 QQRLLER----ELSRVRSILAHNSKKLEETVAANARLESELV 514
+ + + S + + E+ A L E V
Sbjct: 168 LKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADILGLPVEEV 209
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 27.2 bits (60), Expect = 5.8
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGD 556
++L+E RL EL + ++ +R+ V ++ ++AE R+
Sbjct: 11 RELKELALEEERLIQEL----EDVEKNRKVVAE---------NLEKVQAEAERLDQEEAQ 57
Query: 557 LQRQRQELSAQVKQLTEKSNSLSQQIR 583
QR+ E Q +L ++ S+ Q+R
Sbjct: 58 YQREYSEFKRQQLELDDELKSVENQMR 84
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 27.6 bits (62), Expect = 5.9
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 39/117 (33%)
Query: 474 YRRQQR--------LLERELSRVRSILAHNSKKLEETVAANARLESEL-----VV--LRQ 518
+ L E E+ +R +++++ AR+E E + LR+
Sbjct: 3 HHHHHHSHMSRLGDLYEEEMRELR-------RQVDQLTNDKARVEVERDNLAEDIMRLRE 55
Query: 519 KLQ--WSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTE 573
KLQ +RE E L+ + V + R +L +V+ L E
Sbjct: 56 KLQEEMLQRE---------------EAENTLQSFRQDVDNASLARLDLERKVESLQE 97
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 26.9 bits (59), Expect = 5.9
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLR 517
+R + LE ++ ++ + + + + ++ +LE EL +L+
Sbjct: 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 27.2 bits (61), Expect = 6.5
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 28/90 (31%)
Query: 485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAAL- 543
+ +VR LE+ N L +EL L+ + + L
Sbjct: 22 IDKVRF--------LEQ---QNKILLAELEQLKGQ----------------GKSRLGDLY 54
Query: 544 EAELRRVQALVGDLQRQRQELSAQVKQLTE 573
E E+R ++ V L + + + L E
Sbjct: 55 EEEMRELRRQVDQLTNDKARVEVERDNLAE 84
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein,
GAT domain, intracellular trafficking, protein
transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Length = 112
Score = 27.6 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 29 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKS 65
V L+ LR+ + + +QEL +KQ +E S
Sbjct: 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS 43
Score = 27.6 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKS 575
V L+ LR+ + + +QEL +KQ +E S
Sbjct: 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 29.0 bits (64), Expect = 8.2
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 420 IHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQR 479
I +I ++ R G++ + + V E E + + +
Sbjct: 704 IKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMK 763
Query: 480 LLERELSRVRSILAHNSKKLEE---TVAANARLESELVVLRQKLQ 521
++ +++ S NS +LEE + L ++ L++K+
Sbjct: 764 KIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKIS 808
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 28.4 bits (63), Expect = 8.8
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 10/118 (8%)
Query: 464 VHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWS 523
+ A +E + L + + ++ + L + + R + +
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLH-RYFYTGAEILGLIDEK 236
Query: 524 RREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ 581
RE+ G + E+ R A D+ QV+Q + + L
Sbjct: 237 HRELPE-----DVGLDASTAESFHRVHTAFERDVHLLGV----QVQQFQDVATRLQTA 285
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; HET: SSA; 2.60A
{Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A*
2zr3_A
Length = 455
Score = 28.7 bits (65), Expect = 8.8
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 5 VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ---- 60
+++ L +R + + L+ E R + L+ +R +++ ++ +
Sbjct: 13 LVKNDLI--KR---GELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK 67
Query: 61 ------LTEKSNSLSQQI 72
L KS + ++I
Sbjct: 68 GEPVDELLAKSREIVKRI 85
Score = 28.7 bits (65), Expect = 8.8
Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 515 VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ---- 570
+++ L +R + + L+ E R + L+ +R +++ ++ +
Sbjct: 13 LVKNDLI--KR---GELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK 67
Query: 571 ------LTEKSNSLSQQI 582
L KS + ++I
Sbjct: 68 GEPVDELLAKSREIVKRI 85
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 28.5 bits (64), Expect = 9.9
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 471 VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNG 530
+ + + ++L ELS V + L A + LR +L ++ +
Sbjct: 276 TDLFLKDIQVLVSELSMVEATPEL--LALVGEEGAAEPYRYLMKNLRSRLMATQAWL--- 330
Query: 531 TASLSNGPSVAALEAELRRVQALVGDLQRQRQELSA 566
A L L + + L L Q L A
Sbjct: 331 EARLKGEELPKPEGL-LTQNEELWEPLYACYQSLQA 365
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,816,114
Number of extensions: 653321
Number of successful extensions: 1235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 121
Length of query: 746
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 645
Effective length of database: 3,881,772
Effective search space: 2503742940
Effective search space used: 2503742940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.7 bits)