RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2772
(746 letters)
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 72.4 bits (177), Expect = 1e-13
Identities = 36/130 (27%), Positives = 47/130 (36%), Gaps = 30/130 (23%)
Query: 244 LTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATL 303
+ L N+GDY +V + AE+I+ VLYPNDN GKELRLKQ+YF CAA+L
Sbjct: 278 QARPTTEFDLNKFNNGDYKNSVAQQQRAESITAVLYPNDNFAQGKELRLKQQYFWCAASL 337
Query: 304 QVISLPFKDQGRALL------------------------------GYSHSSGREVSKSVV 333
I FK R ++
Sbjct: 338 HDILRRFKKSKRPWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIVTKTF 397
Query: 334 RHTKHMPSPA 343
+T H
Sbjct: 398 AYTNHTVMQE 407
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 67.0 bits (163), Expect = 5e-12
Identities = 48/92 (52%), Positives = 52/92 (56%)
Query: 246 ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV 305
+ LK N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ
Sbjct: 236 KAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQD 295
Query: 306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTK 337
I FK ++ V
Sbjct: 296 IIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLN 327
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 65.9 bits (160), Expect = 1e-11
Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 30/129 (23%)
Query: 245 TERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 304
L NDGD+++A AE +++VLYPNDN F GK+LRL Q+YF CA ++
Sbjct: 222 ATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVA 281
Query: 305 VISLPFKDQGRALL------------------------------GYSHSSGREVSKSVVR 334
I GR L S ++
Sbjct: 282 DILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFA 341
Query: 335 HTKHMPSPA 343
+T H P
Sbjct: 342 YTNHTLMPE 350
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 28.7 bits (64), Expect = 0.71
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 37 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 73
L++ A + +Q + Q+L ++ L ++ L ++
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83
Score = 28.7 bits (64), Expect = 0.71
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 547 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
L++ A + +Q + Q+L ++ L ++ L ++
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83
Score = 27.2 bits (60), Expect = 1.9
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 425 RDQIASKLHSRGRNICSVQGQAK----EMLENALGSLRHKMHGVHASPAEVERYRRQQRL 480
R+++ + I ++ K +L+ A + +E + R+++
Sbjct: 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQ 77
Query: 481 LERELSRVRS 490
L+ +L ++
Sbjct: 78 LKHKLEQLGG 87
Score = 26.4 bits (58), Expect = 3.9
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 30 VAALEAELRRVQALVGDLQRQRQELSAQVKQL 61
+ +++AE +++ + L+++R++L +++QL
Sbjct: 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85
Score = 26.4 bits (58), Expect = 3.9
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 540 VAALEAELRRVQALVGDLQRQRQELSAQVKQL 571
+ +++AE +++ + L+++R++L +++QL
Sbjct: 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 28.3 bits (63), Expect = 0.76
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 37 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 72
L + + + L+ ++ Q+ QL + L +Q+
Sbjct: 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77
Score = 28.3 bits (63), Expect = 0.76
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 547 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
L + + + L+ ++ Q+ QL + L +Q+
Sbjct: 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 27.9 bits (62), Expect = 1.1
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 425 RDQIASKLHSRGRNICSVQGQAK---EMLENALGSLRHKMHGVHASPAEVERYRRQQRLL 481
RD I HS ++ S+QG+ ++L+ A +++ H +++ +RQ LL
Sbjct: 14 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73
Query: 482 ERELSRVR 489
E+++ +
Sbjct: 74 EQQVRALG 81
Score = 27.9 bits (62), Expect = 1.1
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 37 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 73
L + + ++R+ + L ++ L QQ+R
Sbjct: 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78
Score = 27.9 bits (62), Expect = 1.1
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 547 LRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
L + + ++R+ + L ++ L QQ+R
Sbjct: 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366
{Methanococcus jannaschii [TaxId: 2190]}
Length = 82
Score = 27.8 bits (62), Expect = 1.2
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 217 RMEHLQKLE-ELKRHLVELEKQVSITFNLTERNEKIPLKF 255
++E+++ ++ + R +E EK+ + LTE E I +
Sbjct: 27 KLENVENVDIDTLRRAIEAEKKYKRSITLTEEEEVIIQRL 66
>d1qbea_ d.85.1.1 (A:) Qbeta coat protein {Bacteriophage Qbeta
[TaxId: 39803]}
Length = 132
Score = 28.2 bits (62), Expect = 2.1
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 19 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK 59
NG ASLS +V ALE +RV V R R+ QVK
Sbjct: 30 NGVASLSQAGAVPALE---KRVTVSVSQPSRNRKNYKVQVK 67
Score = 28.2 bits (62), Expect = 2.1
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK 569
NG ASLS +V ALE +RV V R R+ QVK
Sbjct: 30 NGVASLSQAGAVPALE---KRVTVSVSQPSRNRKNYKVQVK 67
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney
murine leukemia virus, MoMLV [TaxId: 11801]}
Length = 255
Score = 28.7 bits (63), Expect = 2.4
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Query: 150 TAAETGTERTGQTADGEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARL 209
A E G + + + L L+ + ++YV L
Sbjct: 145 FAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLL 204
Query: 210 ADLETPKRMEHLQKLEELKRHL 231
+ ++ Q L + L
Sbjct: 205 LAATS--ELDCQQGTRALLQTL 224
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.0 bits (60), Expect = 3.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 32 ALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 67
L +LR++Q L + Q++ L+E ++S
Sbjct: 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS 40
Score = 27.0 bits (60), Expect = 3.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 542 ALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS 577
L +LR++Q L + Q++ L+E ++S
Sbjct: 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDS 40
Score = 25.8 bits (57), Expect = 8.5
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 50 QRQELSAQVKQLTEKSNSLSQQIR 73
+ + L+ ++QL E L +
Sbjct: 2 RLEGLTQDLRQLQESEQQLDHLMN 25
Score = 25.8 bits (57), Expect = 8.5
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 560 QRQELSAQVKQLTEKSNSLSQQIR 583
+ + L+ ++QL E L +
Sbjct: 2 RLEGLTQDLRQLQESEQQLDHLMN 25
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 3.8
Identities = 11/91 (12%), Positives = 27/91 (29%)
Query: 437 RNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS 496
R + +ML M S E + ++ +R
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 497 KKLEETVAANARLESELVVLRQKLQWSRREV 527
K E+ + E +++ ++Q + ++
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA
{Caulobacter crescentus [TaxId: 155892]}
Length = 104
Score = 26.5 bits (58), Expect = 5.1
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 427 QIASKLHSRGRNICSVQ-GQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRL 480
+ R + + G+ E E SL + A+ ++ Y +Q L
Sbjct: 46 DAVHTVKGAARGVGAFNLGEVCERCEAGQESLEGVRTALDAALLDIAAYAHEQAL 100
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 26.3 bits (58), Expect = 8.1
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 217 RMEHLQKLEELKRHLVELEKQVSITFNLTERN--------------EKIPLKFVNDGDYI 262
R L+++++ + L EL Q NL +RN I L F+
Sbjct: 11 RQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSK 70
Query: 263 QAVLDRNLAENISRVLYPNDNNF 285
+ V+D +++ + L+ DN F
Sbjct: 71 KTVIDCSISNDKFEYLFNFDNTF 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.366
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,540,558
Number of extensions: 114826
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 34
Length of query: 746
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 654
Effective length of database: 1,144,436
Effective search space: 748461144
Effective search space used: 748461144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.7 bits)