RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2773
(236 letters)
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
phosphatases are non-specific phosphomonoesterases that
catalyze the hydrolysis reaction via a phosphoseryl
intermediate to produce inorganic phosphate and the
corresponding alcohol, optimally at high pH. Alkaline
phosphatase exists as a dimer, each monomer binding 2
zinc atoms and one magnesium atom, which are essential
for enzymatic activity.
Length = 384
Score = 210 bits (537), Expect = 8e-67
Identities = 85/200 (42%), Positives = 103/200 (51%), Gaps = 32/200 (16%)
Query: 7 LFASDHLHYNL---GAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPR 63
LFA HL Y L +P+LAEMT AI +L K G+FL VEGG ID AHH N
Sbjct: 211 LFADSHLPYELDRDPFGKGEPSLAEMTEKAIDVLSKNPNGFFLMVEGGRIDHAHHANDAA 270
Query: 64 YALDETVELAKAVSVAVNLTS-EKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDL- 121
AL ET+ AV A++ + DTL+VVTADH+H I GY+ R N ILG AD +L
Sbjct: 271 GALSETLAFDDAVEAALDFAKKDGDTLVVVTADHSHGGTILGYAGRGNPILGLADAPELD 330
Query: 122 -NGNPYPTLSYANGPAARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSHL 180
+G PY TL+YAN THGG+DV V+A GP SHL
Sbjct: 331 VDGLPYTTLTYANT--------------------------TGTHGGEDVPVFAYGPGSHL 364
Query: 181 FTGSYEQNFIPIAMGFASRV 200
F G E I M +A +
Sbjct: 365 FRGVMENTEIAHVMAYALGL 384
>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues.
Length = 419
Score = 189 bits (482), Expect = 3e-58
Identities = 88/204 (43%), Positives = 114/204 (55%), Gaps = 10/204 (4%)
Query: 7 LFASDHLHYNLGAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYAL 66
LFA + Y + +++P+LAEMT AIRLL K ++G+FL VEGG ID AHH N AL
Sbjct: 217 LFADGDMPYEIDRDSTEPSLAEMTEVAIRLLSKNERGFFLMVEGGRIDHAHHENDACGAL 276
Query: 67 DETVELAKAVSVAVNLTS-EKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNP 125
ETV+ +A+ A+ E +TL++VTADH+H GYS R NDI G A D + P
Sbjct: 277 HETVDFDQAIQAALEFAKKEDETLVIVTADHSHVGTFGGYSLRGNDIFGLAPSLDADRKP 336
Query: 126 YPTLSYANGP--------AARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPW 177
Y TL+Y NGP R V A + VP ETH G+DV V+A GP
Sbjct: 337 Y-TLAYKNGPGYVVKDSNGIRPNVTKAEIGSPEYRAQTAVPLDSETHTGEDVAVFAYGPH 395
Query: 178 SHLFTGSYEQNFIPIAMGFASRVG 201
+HLF G EQ +I M +A +G
Sbjct: 396 AHLFRGVQEQTYIAHVMAYALCLG 419
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase.
Length = 421
Score = 176 bits (449), Expect = 3e-53
Identities = 87/200 (43%), Positives = 110/200 (55%), Gaps = 9/200 (4%)
Query: 7 LFASDHLHYNL-GAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYA 65
LFA + Y + PA+ P+L EMT AIRLL + KG+FL VEGG ID AHH N A
Sbjct: 219 LFADGDMPYEIPRDPATDPSLKEMTEVAIRLLSRNPKGFFLMVEGGRIDHAHHENDACGA 278
Query: 66 LDETVELAKAVSVAVNLT-SEKDTLIVVTADHAHTMMISGYSKRNNDILG-AADQKDLNG 123
L ETV+ +AV A+ SEKDTL+VVTADH+H GY+ R I G A + +G
Sbjct: 279 LGETVDFDQAVKAALEFAKSEKDTLVVVTADHSHVFSFGGYTPRGWSIFGLAPAKATPDG 338
Query: 124 NPYPTLSYANGPA------ARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPW 177
+ + Y NGP AR V A S + + + VP ETH G+DV V+A GP
Sbjct: 339 MAFKLILYGNGPGYKVEDGARPNVTAAESINNIYRTRSAVPLTSETHTGEDVPVFAYGPQ 398
Query: 178 SHLFTGSYEQNFIPIAMGFA 197
+HL G EQ +I M A
Sbjct: 399 AHLVHGVQEQTYIAHVMAAA 418
>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and
metabolism].
Length = 482
Score = 142 bits (361), Expect = 5e-40
Identities = 74/223 (33%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 7 LFASDHLHYNL---GAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPR 63
LFA HL NL P +P+LAEMT AI LL K +KG+FL VEGG ID A H N P
Sbjct: 260 LFADGHLPPNLDRDRDPNDEPSLAEMTEKAIDLLSKNKKGFFLMVEGGRIDWAGHANDPA 319
Query: 64 YALDETVELAKAVSVAVNLTSEKD--TLIVVTADHAHTMMISG----YSKRNNDILGA-- 115
A+ ETV +AV A++ +EKD TL++VTADH + G Y + + I A
Sbjct: 320 GAIGETVAFDEAVQAALD-FAEKDGNTLVIVTADHETGGLTIGRDGVYEWKPDPIKNAKH 378
Query: 116 ------------ADQKDLNGNPY------PTLSYANGPAARAPVYNATSRDASFHYPALV 157
A D+ GN T + A AL+
Sbjct: 379 TGLGLAKKIADGAHLPDVYGNYTGIELTDETPKEIEEALNAPNSIDIIG--AIISERALI 436
Query: 158 PAKDETHGGDDVMVYARGPWSHLFTGSYEQ----NFIPIAMGF 196
H G+DV ++A GP + F G + I A+G
Sbjct: 437 GWTTHGHTGEDVPIFAYGPGAENFRGVMDNTEIFQAIAAALGL 479
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 86.3 bits (214), Expect = 2e-19
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 20 PASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYALDETVELAKAVSVA 79
A PTLA+MT AI LL+K +KG+FL VEG ID H P + ETV+L +AV A
Sbjct: 320 TADVPTLAQMTDKAIDLLKKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKA 379
Query: 80 V-NLTSEKDTLIVVTADHAHTMMI 102
+ + +TL++VTADHAH+ I
Sbjct: 380 LEFARKDGNTLVIVTADHAHSSQI 403
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 33.5 bits (77), Expect = 0.065
Identities = 16/28 (57%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 108 RNNDILGAAD-QKDLNGNPYPTLSYANG 134
RNN IL AD Q DLN TLS AN
Sbjct: 42 RNNRILADADNQFDLNDFYQSTLSLANQ 69
>gnl|CDD|235203 PRK04024, PRK04024, cofactor-independent phosphoglycerate mutase;
Provisional.
Length = 412
Score = 28.7 bits (65), Expect = 2.9
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 23/98 (23%)
Query: 31 RTAIRLLEKEQKGY-FLFVEGGHI---DTAHHNNTPRYALDETVELAKAVSVAVNLTSEK 86
+ A+ LL++ Y F+ + +I D A H+ ++ ++ K + ++
Sbjct: 285 KAAVELLKE----YDFVLL---NIKGTDEAGHDGDFEGKVEVIEKIDKMLGYILDNLDLD 337
Query: 87 DTLIVVTADHA-------HT-----MMISGYSKRNNDI 112
+ I VT DH+ H+ ++I G R +D+
Sbjct: 338 EVYIAVTGDHSTPVEVKDHSGDPVPILIYGPGVRVDDV 375
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
putative. This family consists of proteins restricted
to and found as paralogous pairs (typically close
together) in species of Pyrococcus, a hyperthermophilic
archaeal genus. Members are always found close to other
genes of threonine biosynthesis and appear to represent
the Pyrococcal form of aspartate kinase. Alignment to
aspartokinase III from E. coli shows that 300 N-terminal
and 20 C-terminal amino acids are homologous, but the
form in Pyrococcus lacks ~ 100 amino acids in between
[Amino acid biosynthesis, Aspartate family].
Length = 327
Score = 28.2 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 63 RYALDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSK 107
RYA +E +EL K +L+ EK ++VV+A T + Y+
Sbjct: 12 RYAFEEALELVK------SLSEEKRVIVVVSALKGITDCLIRYAN 50
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 28.0 bits (62), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 44 YFLFVEGGHIDTAHHNNTPRYALDETVE 71
+F F +GG I+ H NT R L ET E
Sbjct: 1144 FFEFTDGGKIEVTHRLNTIRVELYETYE 1171
>gnl|CDD|224272 COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense
mechanisms].
Length = 799
Score = 27.8 bits (62), Expect = 6.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 165 GGDDVMVYARGPWSHLFTGSYEQNFIPIAMGFASRVGPNSKLAGASGGVSTHETH 219
GGDDV+ GPW + + + F+ G N KL ++G V H
Sbjct: 592 GGDDVLAV--GPWDDVL----DFAKE-LRELFSEFTGKNPKLTLSAGIVIVHHKF 639
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 26.2 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 14 HYNLGAPASQPTLAEMTRTAIRLLEKEQK 42
H + TL+E+ AI L+EKEQ
Sbjct: 98 HPAISRTFKSKTLSELALEAIALIEKEQN 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,775,403
Number of extensions: 1089053
Number of successful extensions: 951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 935
Number of HSP's successfully gapped: 17
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)