RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2773
(236 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 244 bits (624), Expect = 4e-79
Identities = 87/207 (42%), Positives = 123/207 (59%), Gaps = 8/207 (3%)
Query: 7 LFASDHLHYNLGA-PASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYA 65
LF+ HL L PTL EMT+ AI +L K++ G+FL VEGG ID HH N R +
Sbjct: 267 LFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
Query: 66 LDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNP 125
L ET+++ +AVS+A+++T ++T+I+VTADH HT+ I+GY+ RN DIL A DL+
Sbjct: 327 LAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRR 386
Query: 126 YPTLSYANGP-------AARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWS 178
Y L Y +GP R +D +F Y + P TH G DV ++ GP++
Sbjct: 387 YTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFA 446
Query: 179 HLFTGSYEQNFIPIAMGFASRVGPNSK 205
HLFTG YE+N+IP A+ +A+ VG
Sbjct: 447 HLFTGVYEENYIPHALAYAACVGTGRT 473
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 238 bits (608), Expect = 1e-76
Identities = 84/203 (41%), Positives = 108/203 (53%), Gaps = 7/203 (3%)
Query: 7 LFASDHLHYNLGA-PASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYA 65
LF + Y + P+L EMT A+RLL + +G+FLFVEGG ID HH + A
Sbjct: 268 LFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRA 327
Query: 66 LDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNP 125
L ET+ A+ A LTSE+DTL +VTADH+H GY R + I G A K +
Sbjct: 328 LTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKA 387
Query: 126 YPTLSYANGP------AARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSH 179
Y L Y NGP AR V + S + + VP +ETH G+DV V+ARGP +H
Sbjct: 388 YTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAH 447
Query: 180 LFTGSYEQNFIPIAMGFASRVGP 202
L G EQ FI M FA+ + P
Sbjct: 448 LVHGVQEQTFIAHVMAFAACLEP 470
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 183 bits (466), Expect = 3e-56
Identities = 51/216 (23%), Positives = 78/216 (36%), Gaps = 26/216 (12%)
Query: 7 LFASDHLHYNLGAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYAL 66
LFA L + + TL+++T+ ++ LL + +KG+ L VEG ID A HNN A+
Sbjct: 181 LFAEVQLPWVIDDT-DANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIATAM 239
Query: 67 DETVELAKAVSVAVNLTSE-KDTLIVVTADHAH-TMMISGYSKRNNDILGAADQK----D 120
E A A+ V + DTL+VVTADH + I + D
Sbjct: 240 AEMQGFANAIEVVEQYIRQHPDTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISASPAS 299
Query: 121 LNGNPYPTLSYANGPA-------------------ARAPVYNATSRDASFHYPALVPAKD 161
+ + + G + + +
Sbjct: 300 IATHAIAADDWQAGVNQQLGFDVNSTELQQLTNARMQGKSTLEVALKKIIDTRSYTGWTT 359
Query: 162 ETHGGDDVMVYARGPWSHLFTGSYEQNFIPIAMGFA 197
H G DV V+A GP + LF G+ + I M
Sbjct: 360 SGHTGVDVQVFAMGPAADLFKGNQDNTHIAEKMMSL 395
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 174 bits (443), Expect = 3e-52
Identities = 51/221 (23%), Positives = 74/221 (33%), Gaps = 31/221 (14%)
Query: 7 LFASD-HLHYNL----GAPASQPTLAEMTRTAIRLLEKEQ---KGYFLFVEGGHIDTAHH 58
LF+ + HL Y L +QP L M + LL KG+FL VE G +D A H
Sbjct: 249 LFSQESHLDYYLDRKNDPENTQPNLDAMVDAGVDLLSSAGDPDKGFFLLVESGRVDHAGH 308
Query: 59 NNTPRYALDETVELAKAVSVAVNL--TSEKDTLIVVTADHAHTMM-ISGYSKRNNDILGA 115
N P E E + V T+ + T +V T DH + + S +
Sbjct: 309 ANYPAQVA-EQYEATQVAGQLVEYAETTAEPTFLVSTGDHECGGLTLGRDSPYEVEYDVL 367
Query: 116 ADQKDLNGNPYPTLSYANGPAARAPVYN-------------------ATSRDASFHYPAL 156
A QK L+ + S A
Sbjct: 368 AAQKATTSRLRDLLAGVRSADELESIVAAHTGITALTDREVAKLRDAPGSISTILAERAG 427
Query: 157 VPAKDETHGGDDVMVYARGPWSHLFTGSYEQNFIPIAMGFA 197
+ + H G DV V+A GP + F + + + A+ A
Sbjct: 428 IAFTTDGHTGTDVPVFAHGPNAARFDAARDNTAVADALAAA 468
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 173 bits (440), Expect = 5e-52
Identities = 59/214 (27%), Positives = 81/214 (37%), Gaps = 49/214 (22%)
Query: 7 LFASDHLHYNLGA----------------------PASQPTLAEMTRTAIRLLEKEQKGY 44
LFA ++ S PTLA+MT AI LL K +KG+
Sbjct: 258 LFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGF 317
Query: 45 FLFVEGGHIDTAHHNNTPRYALDETVELAKAVSVAVNLT-SEKDTLIVVTADHAHTMMIS 103
FL VEG ID H P + ETV+L +AV A+ E +TL++VTADHAH I
Sbjct: 318 FLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIV 377
Query: 104 GYSKRNNDILGAADQKDLNGNPYPTLSYANGPAARAPVYNATSRDASFHYPALVPAKDET 163
+ + A + KD +SY N +
Sbjct: 378 APDTKAPGLTQALNTKD---GAVMVMSYGN-----------------------SEEDSQE 411
Query: 164 HGGDDVMVYARGPWSHLFTGSYEQNFIPIAMGFA 197
H G + + A GP + G +Q + M A
Sbjct: 412 HTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAA 445
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 161 bits (409), Expect = 5e-48
Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 35/189 (18%)
Query: 7 LFASDHLHYNLGAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYAL 66
+D + L+ T AI+ L K+ +F+ EG ID H N Y +
Sbjct: 213 FLLADEAMPTM-EKGRGNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLI 271
Query: 67 DETVELAKAVSVAVNLTSE-KDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNP 125
E + A+ A+ + +TL++VT+DH G++ L A K +G+
Sbjct: 272 SEINDFDDAIGTALAFAKKDGNTLVIVTSDHET----GGFT------LAAKKNKREDGSE 321
Query: 126 YPTLSYANGPAARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSHLFTGSY 185
Y + H + V+A GP S F G Y
Sbjct: 322 YSD-----------------------YTEIGPTFSTGGHSATLIPVFAYGPGSEEFIGIY 358
Query: 186 EQNFIPIAM 194
E N I +
Sbjct: 359 ENNEIFHKI 367
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 150 bits (381), Expect = 6e-43
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 13/168 (7%)
Query: 7 LFASDHLHYNL-------GAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHN 59
LFA + + +QP+L EMT+ A+ +L K++ G+FL VEGG ID A H+
Sbjct: 219 LFAYSGMDDGIAYSNKKKSGERTQPSLKEMTQKALNILSKDEDGFFLMVEGGQIDWAGHS 278
Query: 60 NTPRYALDETVELAKAVSVAVNLTSE-KDTLIVVTADHAHTMMISGYSKRNNDILGAADQ 118
N L E ++ +A+ + +DT+++VTADH G+S +ND+ +
Sbjct: 279 NDAGTMLHELLKFDEAIQTVYEWAKDREDTIVIVTADHETGSF--GFSYSSNDLPKPQKR 336
Query: 119 KDLNGNPYPTLSYANGPAARAPVYNATSRDASFHYPALVPAKDETHGG 166
+G + YA A + Y ++ +
Sbjct: 337 ---SGEAFADRDYAPNFNFGAFDILDGLYNQKQSYYGMISEFQKLDKS 381
Score = 41.0 bits (96), Expect = 2e-04
Identities = 24/188 (12%), Positives = 54/188 (28%), Gaps = 7/188 (3%)
Query: 10 SDHLHYNLG-APASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYALDE 68
+DH + G + +S R+ +++ F F +D ++ Y +
Sbjct: 314 ADHETGSFGFSYSSNDLPKPQKRSGEAFADRDYAPNFNFGAFDILDGLYNQKQSYYGMIS 373
Query: 69 TVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNPYPT 128
E K + + + + A K L+ P
Sbjct: 374 --EFQKLDKSLQTPEKLAEIVNKNSEFPITAEQAKNVLASKPNPYRLAQHKYLSAEEVPA 431
Query: 129 LSYANGPAARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSHLF--TGSYE 186
++ + N +R+ + + TH V V+A GP + +
Sbjct: 432 INDFDAFFPYNDRGNLLAREQATG--QNIVWGTGTHTHTPVNVFAWGPAEKILPVSKIMH 489
Query: 187 QNFIPIAM 194
+ + +
Sbjct: 490 HSELGEYI 497
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.006
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 3 SFKSLFASDHLHYNLGAPASQPTLA 27
+ K L AS L Y A S P LA
Sbjct: 21 ALKKLQASLKL-Y---ADDSAPALA 41
Score = 34.9 bits (79), Expect = 0.009
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 12/41 (29%)
Query: 31 RTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYALDETVE 71
+ A++ L+ K L+ + D+A P A+ T+E
Sbjct: 19 KQALKKLQASLK---LYAD----DSA-----PALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 81/216 (37%)
Query: 19 APASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYALDETVELAKAVS- 77
A A + + + + LF I + P +L ++ L ++
Sbjct: 282 AIAETDSWESFFVSVRKAIT------VLF----FIGVRCYEAYPNTSLPPSI-LEDSLEN 330
Query: 78 --------VAV-NLTSEK-DTLIVVTADH--------------AHTMMISGYSK------ 107
+++ NLT E+ + T H A +++SG +
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 108 ---RNNDILGAADQKDLNGNPYPTLSYANGPAARAPVYNATSR----DASFHYPALVPAK 160
R A D + P+ + R + ++R + FH LVPA
Sbjct: 391 LTLRK---AKAPSGLDQSRIPF---------SERKLKF--SNRFLPVASPFHSHLLVPAS 436
Query: 161 D-----------ETHGGD-DVMVYARGPWSHLFTGS 184
D + D + VY F GS
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVY------DTFDGS 466
Score = 28.9 bits (64), Expect = 1.8
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 49/129 (37%)
Query: 131 YANGPAARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSH--LFTGSYEQ- 187
Y AA+ V+N A H+ +T+G + + P + F G +
Sbjct: 1636 YKTSKAAQD-VWN----RADNHF-------KDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 188 ---NFIPIAMGFASRV-----------------------GPNSKLAGASGGVSTHETHAV 221
N+ AM F + V L+ +T T
Sbjct: 1684 IRENYS--AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS------ATQFTQPA 1735
Query: 222 LMLLSVAVV 230
L L+ A
Sbjct: 1736 LTLMEKAAF 1744
Score = 27.7 bits (61), Expect = 4.2
Identities = 43/241 (17%), Positives = 70/241 (29%), Gaps = 76/241 (31%)
Query: 15 YNLGAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDT--AHHNNTPRYALDETVEL 72
Y + T L+ +F +G +I + +NTP D+ L
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP----DKDYLL 232
Query: 73 AKAVSVAVNLTSEKDTLIVVTADHAH---TMMISGYSKRN-NDILGAADQKDLNGNPYPT 128
+ +S LI V AH T + G++ L A
Sbjct: 233 SIPISC---------PLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGA------------ 270
Query: 129 LSYANG-PAARAPVYNATSRD-ASFH--------------------YP--ALVPA--KDE 162
++ G A A A + SF YP +L P+ +D
Sbjct: 271 TGHSQGLVTAVAI---AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 163 THGGDDV---MVYARG-PWSHLF-----TGSY--EQNFIPIAM--GFASRV--GPNSKLA 207
+ V M+ + T S+ + I++ G + V GP L
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 208 G 208
G
Sbjct: 388 G 388
Score = 26.9 bits (59), Expect = 8.6
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 23 QPTLAEMTRTAIRLLEKEQKGYFLFVEG----GH 52
QP L M + A L+ + L GH
Sbjct: 1733 QPALTLMEKAAFEDLKSK----GLIPADATFAGH 1762
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 28.1 bits (62), Expect = 2.6
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 37 LEKEQKGYFLFVEGGHIDTAHHNNTPRYA--------LDETVELAKAVSVAVNLTSEKDT 88
+ Q+ + + H+D A H++ P +D + A T
Sbjct: 154 TDGAQRNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTR--ART 211
Query: 89 LIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNPYPTLSYANGP 135
I+V +DH + G++ DI + G
Sbjct: 212 NIIVVSDHGMAEVAPGHAISVEDIAPPQIATAITDGQVIGFEPLPGQ 258
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 27.2 bits (60), Expect = 4.1
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 49 EGGHIDTAHHNNTPRYALDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKR 108
EGGHI TA N P E+ L ++ + +K +++ H+ S R
Sbjct: 58 EGGHIKTAV--NLPLERDAESFLLKSPIAPC---SLDKRVILIF-----HSEFSSERGPR 107
Query: 109 NNDILGAADQKDLNGNPYPTLSYAN 133
+ D+ N YP+L Y
Sbjct: 108 MCRFIRERDRAV---NDYPSLYYPE 129
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 26.9 bits (59), Expect = 4.3
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 49 EGGHIDTAHHNNTPRYALDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKR 108
EGGHI A + + D ++ T K ++V + + S+R
Sbjct: 57 EGGHIKGAVNLHMEEEVEDFLLKKPIV------PTDGKRVIVVFHCEFS--------SER 102
Query: 109 NNDILGAADQKDLNGNPYPTLSYAN 133
+ ++D GN YP L Y
Sbjct: 103 GPRMCRYVRERDRLGNEYPKLHYPE 127
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 27.5 bits (61), Expect = 4.9
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 86 KDTLIVVTADHAH 98
DT+ +V ADH
Sbjct: 296 DDTIFIVIADHDA 308
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 27.2 bits (59), Expect = 5.9
Identities = 16/146 (10%), Positives = 35/146 (23%), Gaps = 22/146 (15%)
Query: 37 LEKEQKGYFLFVEGGHIDTAHHNNTP-----RYAL---DETVELAKAVSVAVNLTSEKDT 88
L ++ D + H P L D+TV + L +
Sbjct: 259 LPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLH--RCV 316
Query: 89 LIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNPYPTLSYANGPAARAPVYNATSRD 148
++ DH + ++ ++ L D L + +
Sbjct: 317 NVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTL------------GRIRPKIPNN 364
Query: 149 ASFHYPALVPAKDETHGGDDVMVYAR 174
+ A++ Y +
Sbjct: 365 LKYDPKAIIANLTCKKPDQHFKPYMK 390
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 26.2 bits (57), Expect = 8.2
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 49 EGGHIDTAHHNNTPRYALDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKR 108
GGHI A + + + ++ L ++K +IV + + S+R
Sbjct: 91 LGGHIQGALNLYSQEELFNFFLKKPIVP-----LDTQKRIIIVFHCEFS--------SER 137
Query: 109 NNDILGAADQKDLNGNPYPTLSYAN 133
+ ++D + N YP L Y
Sbjct: 138 GPRMCRCLREEDRSLNQYPALYYPE 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,503,488
Number of extensions: 206286
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 26
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)