RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2773
         (236 letters)



>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 479

 Score =  188 bits (478), Expect = 8e-58
 Identities = 84/203 (41%), Positives = 110/203 (54%), Gaps = 7/203 (3%)

Query: 7   LFASDHLHYNLGAPAS-QPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYA 65
           LF    + Y +   ++  P+L EMT  A+RLL +  +G+FLFVEGG ID  HH +    A
Sbjct: 268 LFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRA 327

Query: 66  LDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNP 125
           L ET+    A+  A  LTSE+DTL +VTADH+H     GY  R + I G A  K  +   
Sbjct: 328 LTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKA 387

Query: 126 YPTLSYANGP------AARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSH 179
           Y  L Y NGP       AR  V  + S    +   + VP  +ETH G+DV V+ARGP +H
Sbjct: 388 YTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAH 447

Query: 180 LFTGSYEQNFIPIAMGFASRVGP 202
           L  G  EQ FI   M FA+ + P
Sbjct: 448 LVHGVQEQTFIAHVMAFAACLEP 470


>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
           (Pandalus borealis) [TaxId: 6703]}
          Length = 476

 Score =  183 bits (465), Expect = 5e-56
 Identities = 88/205 (42%), Positives = 124/205 (60%), Gaps = 8/205 (3%)

Query: 7   LFASDHLHYNLGAPAS-QPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYA 65
           LF+  HL   L   A   PTL EMT+ AI +L K++ G+FL VEGG ID  HH N  R +
Sbjct: 267 LFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326

Query: 66  LDETVELAKAVSVAVNLTSEKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNP 125
           L ET+++ +AVS+A+++T  ++T+I+VTADH HT+ I+GY+ RN DIL  A   DL+   
Sbjct: 327 LAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRR 386

Query: 126 YPTLSYANGP-------AARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWS 178
           Y  L Y +GP         R        +D +F Y +  P    TH G DV ++  GP++
Sbjct: 387 YTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFA 446

Query: 179 HLFTGSYEQNFIPIAMGFASRVGPN 203
           HLFTG YE+N+IP A+ +A+ VG  
Sbjct: 447 HLFTGVYEENYIPHALAYAACVGTG 471


>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 449

 Score =  155 bits (392), Expect = 2e-45
 Identities = 57/185 (30%), Positives = 77/185 (41%), Gaps = 27/185 (14%)

Query: 14  HYNLGAPASQPTLAEMTRTAIRLLEKEQKGYFLFVEGGHIDTAHHNNTPRYALDETVELA 73
             N     S PTLA+MT  AI LL K +KG+FL VEG  ID   H   P   + ETV+L 
Sbjct: 287 TPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLD 346

Query: 74  KAVSVAVNLTS-EKDTLIVVTADHAHTMMISGYSKRNNDILGAADQKDLNGNPYPTLSYA 132
           +AV  A+     E +TL++VTADHAH   I     +   +  A + KD        +SY 
Sbjct: 347 EAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKD---GAVMVMSYG 403

Query: 133 NGPAARAPVYNATSRDASFHYPALVPAKDETHGGDDVMVYARGPWSHLFTGSYEQNFIPI 192
           N                            + H G  + + A GP +    G  +Q  +  
Sbjct: 404 NS-----------------------EEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFY 440

Query: 193 AMGFA 197
            M  A
Sbjct: 441 TMKAA 445


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 27.1 bits (59), Expect = 2.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 84  SEKDTLIVVTADHAHTMMISGYSKRNND 111
             K TL++   D A ++ ++G +    D
Sbjct: 22  GYKCTLVLTEGDSALSLAVAGLAVVGRD 49


>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 24.7 bits (54), Expect = 4.4
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 19 APASQPTLAEMTRTAIRLLEKEQKG 43
            AS  +  E+    +  L KE+KG
Sbjct: 2  EEASSKSYRELIIEGLTAL-KERKG 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,907
Number of extensions: 34009
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 7
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)