BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2775
(785 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 140/524 (26%), Positives = 222/524 (42%), Gaps = 53/524 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP F + + V A +TL+ ++ PE + WY L+ ++++ S V
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
I + + G YT A+N G A V V + PS L DV T G
Sbjct: 65 ----INKVDHSDVGEYTCKAENSVG-AVASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
++ G +V WYKDG+L+KD Q + N TL ++Q G+Y+ +N
Sbjct: 120 AFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP 179
Query: 189 EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSI--LEPLHDVS 246
GT S+A L + E P L+P+ V
Sbjct: 180 LGTASSSAKLTLSEH------------------------------EVPPFFDLKPV-SVD 208
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRY 303
+ GES V G K+ W KD + I+ + ++T +NT TLT+++ + D G+Y
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEV-TSDKADVKWFK 361
+ +N G +A L V Q FIKKL+ VK+ E+ E ++ S + V W+K
Sbjct: 269 TCYASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK 327
Query: 362 DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV---VELPPEI 418
D EI+ S K + ++ L + N+SV D G+YTC + SA + V+ PP
Sbjct: 328 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387
Query: 419 SVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA 477
V+ + E EL V W+KD +E+ + + + + I +
Sbjct: 388 RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447
Query: 478 GLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLV 520
D GEY C+ D G ++T++AP F+ KL ++ V
Sbjct: 448 DSADIGEYQCKASNDVGSDTCVGSITLKAPP-RFVKKLSDISTV 490
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 127/509 (24%), Positives = 217/509 (42%), Gaps = 56/509 (11%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+PP+F++K K V+ V E R+ + WY +GE L++ + Q+
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANL----QTSFIHN 155
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI--LEPLHDVSITEG 128
V+ + I + G Y A N G A K+ + E P L+P+ V + G
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSS--AKLTLSEHEVPPFFDLKPV-SVDLALG 212
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
ES V G K+ W KD + I+ + ++T +NT TLT+++ + D G+Y+
Sbjct: 213 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 272
Query: 186 TNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDV 245
+N G +A L V E P ++ L
Sbjct: 273 SNVAGKDSCSAQLGVQ--------------------------------EPPRFIKKLEPS 300
Query: 246 SIT-EGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKG 301
I + E ++GG P KV WYKD I++ +++ ++ L + S +D G
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 302 RYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT-SDKADVKWF 360
Y+ + N G+ S+ +L V + F KK +E + + LE E+ + V W
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEPPV-FRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 361 KDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD---QETSAELNVVELPPE 417
KD +E+++ KK I + + + I N+ D GEY C + +T ++ PP
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR 479
Query: 418 ISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAF-SENVTLSIDGKKQKLIIF 475
L D+ E+ + + + + V W+KD EI S+N+ +S L
Sbjct: 480 FVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFS 539
Query: 476 SAGLEDAGEYSCRV-GDTGDKESKATLTV 503
A +AG+Y+C++ + G +E ATL+V
Sbjct: 540 RAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 139/601 (23%), Positives = 233/601 (38%), Gaps = 93/601 (15%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNT 165
G E P +EPL V GE L +V G P ++ WYK+ ++ ++ + N
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDT 225
+L + + D G Y+ K N G V S+A L +
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKE----------------------- 97
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQIT 282
+ PS L DV T G ++ G +V WYKDG+L+KD Q +
Sbjct: 98 ------RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS 151
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE--FIKKLDDLEVKE 340
N TL ++Q G+Y+ +N GT S+A L + + + F K +++
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 341 RENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
E+ + VT + W KD +EI+ + L + ++ D G+YTC
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 400 LPD----QETSAELNVVELPPEISVPLQDVK-VSRDEKASFEIELTKGDAL-VKWYKDGK 453
+ SA+L V E PP L+ + V +DE +E ++ + V WYKD
Sbjct: 272 ASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET 330
Query: 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLT 512
EI S +S L +++ +ED+G+Y+C + G S +L V+ P V
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV--FR 388
Query: 513 KLPSVTLVPHLGDATFQVEL-SSPDIQVKW-----------------------LNLFIVP 548
K P D + EL +P QV W +++ V
Sbjct: 389 KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVD 448
Query: 549 TCPLG-------------------SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
+ +G + P F+++ + + ++L A ++ + S
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPIS 508
Query: 590 IVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSETDAGDYKVVATNELGSATHGARVT 648
+ WF++ ++ I ENI L+ A+ +AG Y NE G+ A ++
Sbjct: 509 VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP-ANAGKYTCQIKNEAGTQECFATLS 567
Query: 649 V 649
V
Sbjct: 568 V 568
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 50/355 (14%)
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT-EGES 130
+ +T+ + K + G YT A N G+ G E P ++ L I + E
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAGKDS----CSAQLGVQEPPRFIKKLEPSRIVKQDEH 308
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
++GG P KV WYKD I++ +++ ++ L + S +D G Y+ + N
Sbjct: 309 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 368
Query: 188 KEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSI 247
G+ S+ +L V E P + H V
Sbjct: 369 AAGSASSSTSLKVK--------------------------------EPPVFRKKPHPVET 396
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYS 304
+G L ++ G P +V W+KD + + K +I SE ++ ++ + D G Y
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 456
Query: 305 VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV-TSDKADVKWFKD- 362
K +N G+ ++ + + F+KKL D+ E L+ + ++ V WFKD
Sbjct: 457 CKASNDVGSDTCVGSITL-KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK 515
Query: 363 GQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD----QETSAELNVVE 413
G+ ++ S + I I L + G+YTC + + QE A L+V+E
Sbjct: 516 GEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P FIE E I L KV +P I W++ + L S+P + F L +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
+ D +D G+Y A N +G+ A + + K+ PP
Sbjct: 66 NKVD-HSDVGEYTCKAENSVGAVASSAVLVIKERKL--PP 102
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/247 (17%), Positives = 88/247 (35%), Gaps = 54/247 (21%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLI 473
PP PL+ V+ + E + + ++ + + WYK+ ++ + + L+
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 474 IFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
I D GEY+C+ ++ G S A L ++ KLP
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKE------RKLP----------------- 101
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
P F + ++ + ++ S + W
Sbjct: 102 --------------------------PSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
+++ + L + F L++ + D ++ G Y A+N LG+A+ A++T+
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQILQTD-QSHVGQYNCSASNPLGTASSSAKLTLSEH 194
Query: 653 KVGRPPI 659
+V PP
Sbjct: 195 EV--PPF 199
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 66/499 (13%)
Query: 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGV 86
+S + L P P WY E VV +D+ S + IK + G
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVS--GTLIIKDAVVEDSGK 320
Query: 87 YTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE 146
Y V N G ++ + V P I P V G AV + Q G P V
Sbjct: 321 YLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPAVFTCQYTGNPIKTVS 376
Query: 147 WYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXX 206
W KDGK I + L + +DKG Y V N + E++A L +
Sbjct: 377 WMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG----- 424
Query: 207 XXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 266
G+ + P I + + ++ G S L GG P+P+
Sbjct: 425 ------------------------GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPE 460
Query: 267 VEWYKDGKLI--KDRQITSEKNT------HTLTLIQCSTKDKGRYSVKVTNKEGTVESAA 318
+ W DGK I DR + T L + D G Y +K G E +A
Sbjct: 461 ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA 520
Query: 319 NLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD-VKWFKDGQEIKTSKKVTIEKK 377
LNV +I++++ + E ++ V D + W +D + + ++K +
Sbjct: 521 KLNVY--GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPN 578
Query: 378 GTIRKLLIRNISVH-DEGEYTCSLPDQE-----TSAELNVVELPPEISVPLQDVKVSRDE 431
GT L+I N+ + D+ YTC +QE S E+ V+ LP I ++ +
Sbjct: 579 GT---LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQ 635
Query: 432 KASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA-GLEDAGEYSCR 488
+ + GD + W DG+ I+ +T S G++ ++ A AG ++C
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCH 695
Query: 489 VGD-TGDKESKATLTVEAP 506
+ G ++ L V P
Sbjct: 696 ARNLAGHQQFTTPLNVYVP 714
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 162/424 (38%), Gaps = 91/424 (21%)
Query: 244 DVSITEGESAV-LSVQVGGEPSPKVEWYK--DGKLIKDRQITSEKN---THTLTLIQCST 297
D+ G S + L G P P WYK +G K + +++ + TL +
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD--DLEVKERENAVLEVEVTSDKA 355
+D G+Y V N G L V A K+D V AV + T +
Sbjct: 316 EDSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 372
Query: 356 -DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL 414
V W KDG+ I S+ V L I ++ D+G Y C + + SAE + EL
Sbjct: 373 KTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEASA-EL 421
Query: 415 -------PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSI 465
PP I Q+ + + F + G+ + W DGK+IA ++ +
Sbjct: 422 KLGGRFDPPVIRQAFQE-ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV-- 478
Query: 466 DGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
G+Y +TV V +L ++T V H D
Sbjct: 479 -----------------GQY---------------VTVNGDVVSYL----NITSV-HAND 501
Query: 526 ATFQVELSSPDIQVKW----LNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
++ + V LN++ +P +I + E+K + T+ +
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLNVYGLP------------YIRQMEKKAIVAGETLIVTCP 549
Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
V P SIVW R+N+ L + +K+++F +I+E E +S D Y VA N+ G +
Sbjct: 550 VAGYPIDSIVWERDNRALPIN-RKQKVFPNGTLIIENVERNS--DQATYTCVAKNQEGYS 606
Query: 642 THGA 645
G+
Sbjct: 607 ARGS 610
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 120/305 (39%), Gaps = 74/305 (24%)
Query: 358 KWFK--DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
+W+K +G K + + K L+I++ V D G+Y C S+ + L V
Sbjct: 281 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Query: 412 VE-LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGK 468
L +I P Q V R A F + T G+ + V W KDGK I SE+V L I+
Sbjct: 341 TAPLSAKIDPPTQTVDFGR--PAVFTCQYT-GNPIKTVSWMKDGKAIGHSESV-LRIESV 396
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
K+ ED G Y C V + D+ES EA A
Sbjct: 397 KK---------EDKGMYQCFVRN--DRES-----AEASA--------------------- 419
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
EL LG P+ + F+E+T++ ++ L +P P
Sbjct: 420 --ELK------------------LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP 459
Query: 589 SIVWFRNNKPLLSSPK----KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
I W + K + ++ + + +G+ + + D G YK +A +++G A H
Sbjct: 460 EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS 519
Query: 645 ARVTV 649
A++ V
Sbjct: 520 AKLNV 524
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/407 (20%), Positives = 154/407 (37%), Gaps = 65/407 (15%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS-Y 70
PP + + E V L+ P P++ W +G+ + D ++
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
VS + I S+ + G+Y +AK++ G A+ + V G P + + +I GE+
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV-YGLP----YIRQMEKKAIVAGET 543
Query: 131 AVLSVQVGGEPSPKVEWYKDGKL--IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
+++ V G P + W +D + I +Q T + ++ D+ Y+ N+
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE-RNSDQATYTCVAKNQ 602
Query: 189 EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSIT 248
EG +L+V +L + +
Sbjct: 603 EGYSARG-----------------------------SLEVQV------MVLPRIIPFAFE 627
Query: 249 EGESAV---LSVQV---GGEPSPKVEWYKDGKLI-KDRQITSE---KNTHTLTLIQCSTK 298
EG + V L++ GG+ ++W DG+ I +D IT+ + LT+
Sbjct: 628 EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS 687
Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD-------DLEVKERENAVLEVEVT 351
G ++ N G + LNV ++ D D +V+ + + + +VT
Sbjct: 688 HAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVT 747
Query: 352 SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
KA + +++K S + +E +GT L + NI +EG Y C
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVE-EGT---LHVDNIQKTNEGYYLC 790
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
S++TI++++ G +T A+N G + P+ V P + ILEP D + +G A
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV--PPR-WILEPT-DKAFAQGSDA 732
Query: 132 VLSVQVGGEPSPKVEW----------YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
+ + G P P+V W YKD L K I E+ T + IQ ++G Y
Sbjct: 733 KVECKADGFPKPQVTWKKAVGDTPGEYKD--LKKSDNIRVEEGTLHVDNIQ--KTNEGYY 788
Query: 182 SVKVTNKEGTVESA 195
+ N G+ SA
Sbjct: 789 LCEAINGIGSGLSA 802
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 605
+V T P+ S + + +F+ KT T+ L+ + P P W+ K + + +K
Sbjct: 236 LVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWY---KFIEGTTRK 292
Query: 606 REIFDGENI-----ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGR--PP 658
+ + + + L +K+A E D+G Y V N +G + +TV + PP
Sbjct: 293 QAVVLNDRVKQVSGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP 351
Query: 659 INSIDIDRNHVHHLDNIDSP 678
++D R V +P
Sbjct: 352 TQTVDFGRPAVFTCQYTGNP 371
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
Query: 532 LSSPDIQVKWLNLFI-VPTCPLGSPGQA----------PLFIER------FEEKTVKEKG 574
++ P+ ++KWL LF V GS A P+F++ F T E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAE-- 58
Query: 575 TIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREI-FDGENIILELKEAD--SETDAGDY 630
+ K +P P I+W R++ + P R+I DG+ + + D E A Y
Sbjct: 59 ---IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115
Query: 631 KVVATNELGS 640
+A N+ GS
Sbjct: 116 ACLARNQFGS 125
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 37/219 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 166
+ P+ +PL V + EG +A + G P P+V W++DG++I QI+
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTL 226
LT+ + + GRYS+K TN G S A L V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV-------------------------- 97
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
+ P+ ++ L +++ +G L V+V G P+P V++Y+DG I+ D QI+
Sbjct: 98 ---KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
E + ++L + + +D G YSV TN G S A L V
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 89.4 bits (220), Expect = 8e-18, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 288
+ P+ +PL V + EG +A + G P P+V W++DG++I QI+
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKERENAVL 346
LT+ + + GRYS+K TN G S A L V A F+++L + V++ L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 347 EVEVTSDKAD-VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY----TCSLP 401
+V VT VK+++DG EI++S I ++G + LLI D G Y T S+
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 402 DQETSAELNV 411
++AEL V
Sbjct: 184 RATSTAELLV 193
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD----EVVFSDQSDMH 68
PTF++ + V E S T E + P P++ W+ +G+ + + ++ FSD
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR--- 62
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAK--MDIPVKVNTGKPEKPSILEPLHDVSIT 126
+ +TI ++ K G Y++ A N G+A ++ VK T P + ++ L +++
Sbjct: 63 ---AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP---NFVQRLQSMTVR 116
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSV 183
+G L V+V G P+P V++Y+DG I+ D QI+ E + ++L + + +D G YSV
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 184 KVTNKEGTVESAANLNV 200
TN G S A L V
Sbjct: 177 NATNSVGRATSTAELLV 193
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 54/238 (22%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYKDGKEIAFSE--NVTLSIDGKKQKL 472
P + PLQ V V A+FE ++ V W++DG+ I+ S V +S + KL
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 473 IIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
I + ++G YS + + +G S A L V+A
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE------------------------- 100
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
T P P F++R + TV++ +RL +V P P +
Sbjct: 101 -----------------TAP-------PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK 136
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
++R+ + SS + +G+ L + EA E D+G Y V ATN +G AT A + V
Sbjct: 137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTAELLV 193
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLI 385
F + L + V E A E ++ +V WF+DGQ I TS V I KL I
Sbjct: 8 FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67
Query: 386 RNISVHDEGEYTCSLPD---QETS-AELNVVE--LPPEISVPLQDVKVSRDEKASFEIEL 439
++ + G Y+ + Q TS AEL V PP LQ + V + + ++ +
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV 127
Query: 440 TK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKES 497
T +VK+Y+DG EI S + +S +G L+I A ED+G YS ++ G S
Sbjct: 128 TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Query: 498 KATLTVE 504
A L V+
Sbjct: 188 TAELLVQ 194
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 2 SSLADIL---EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE 58
+S A++L E PP F ++ + + + S+V L+VR+ +P P + +Y +G +Q + +
Sbjct: 90 TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD 149
Query: 59 VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
S + D++S + I + G Y+V A N G A
Sbjct: 150 FQISQEGDLYSLL----IAEAYPEDSGTYSVNATNSVGRA 185
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 614
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
L + A ++ ++G Y + ATN G AT A + V E PP N V L +
Sbjct: 64 KLTIP-AVTKANSGRYSLKATNGSGQATSTAELLVKAETA--PP--------NFVQRLQS 112
Query: 675 IDSPRQSTEVDVE 687
+ + RQ ++V ++
Sbjct: 113 M-TVRQGSQVRLQ 124
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 38/227 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 166
+ P+ +PL V + EG +A + G P P+V W++DG++I QI+
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTL 226
LT+ + + GRYS+K TN G S A L V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV-------------------------- 97
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
+ P+ ++ L +++ +G L V+V G P+P V++Y+DG I+ D QI+
Sbjct: 98 ---KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD-QGKAEF 329
E + ++L + + +D G YSV TN G S A L V + + EF
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGETREEF 201
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTH 288
+ P+ +PL V + EG +A + G P P+V W++DG++I QI+
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKERENAVL 346
LT+ + + GRYS+K TN G S A L V A F+++L + V++ L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 347 EVEVTSDKAD-VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY----TCSLP 401
+V VT VK+++DG EI++S I ++G + LLI D G Y T S+
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 402 DQETSAELNV 411
++AEL V
Sbjct: 184 RATSTAELLV 193
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD----EVVFSDQSDMH 68
PTF++ + V E S T E + P P++ W+ +G+ + + ++ FSD
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR--- 62
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAK--MDIPVKVNTGKPEKPSILEPLHDVSIT 126
+ +TI ++ K G Y++ A N G+A ++ VK T P + ++ L +++
Sbjct: 63 ---AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP---NFVQRLQSMTVR 116
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSV 183
+G L V+V G P+P V++Y+DG I+ D QI+ E + ++L + + +D G YSV
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 184 KVTNKEGTVESAANLNV 200
TN G S A L V
Sbjct: 177 NATNSVGRATSTAELLV 193
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 54/241 (22%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSE--NVTLSIDGKKQKL 472
P + PLQ V V A+FE ++ V W++DG+ I+ S V +S + KL
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 473 IIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
I + ++G YS + + +G S A L V+A
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE------------------------- 100
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
T P P F++R + TV++ +RL +V P P +
Sbjct: 101 -----------------TAP-------PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVK 136
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
++R+ + SS + +G+ L + EA E D+G Y V ATN +G AT A + V
Sbjct: 137 FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTAELLVQG 195
Query: 652 E 652
E
Sbjct: 196 E 196
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLI 385
F + L + V E A E ++ +V WF+DGQ I TS V I KL I
Sbjct: 8 FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67
Query: 386 RNISVHDEGEYTCSLPD---QETS-AELNVVE--LPPEISVPLQDVKVSRDEKASFEIEL 439
++ + G Y+ + Q TS AEL V PP LQ + V + + ++ +
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV 127
Query: 440 TK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKES 497
T +VK+Y+DG EI S + +S +G L+I A ED+G YS ++ G S
Sbjct: 128 TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Query: 498 KATLTVEAPAVE 509
A L V+ E
Sbjct: 188 TAELLVQGETRE 199
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 2 SSLADIL---EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE 58
+S A++L E PP F ++ + + + S+V L+VR+ +P P + +Y +G +Q + +
Sbjct: 90 TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLD 149
Query: 59 VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
S + D++S + I + G Y+V A N G A
Sbjct: 150 FQISQEGDLYSLL----IAEAYPEDSGTYSVNATNSVGRA 185
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 614
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
L + A ++ ++G Y + ATN G AT A + V E PP N V L +
Sbjct: 64 KLTIP-AVTKANSGRYSLKATNGSGQATSTAELLVKAETA--PP--------NFVQRLQS 112
Query: 675 IDSPRQSTEVDVE 687
+ + RQ ++V ++
Sbjct: 113 M-TVRQGSQVRLQ 124
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 12/277 (4%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 295
L+P+ V + GES V G K+ W KD + I+ + ++T +NT TLT+++
Sbjct: 10 LKPV-SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVT-SD 353
+ D G+Y+ +N G +A L V Q FIKKL+ VK+ E+ E ++ S
Sbjct: 69 TKGDAGQYTCYASNVAGKDSCSAQLGV-QAPPRFIKKLEPSRIVKQDEHTRYECKIGGSP 127
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
+ V W+KD EI+ S K + ++ L + N+SV D G+YTC + SA +
Sbjct: 128 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
Query: 412 -VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKK 469
V+ PP V+ + E EL V W+KD +E+ + + +
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
+ I + D GEY C+ D G ++T++A
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 40/289 (13%)
Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 173
L+P+ V + GES V G K+ W KD + I+ + ++T +NT TLT+++
Sbjct: 10 LKPV-SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKP 233
+ D G+Y+ +N G +A L V P
Sbjct: 69 TKGDAGQYTCYASNVAGKDSCSAQLGVQ-----------------------------APP 99
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 290
LEP V + E ++GG P KV WYKD I++ +++ ++ L
Sbjct: 100 RFIKKLEPSRIVK--QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVL 157
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
+ S +D G Y+ + N G+ S+ +L V + F KK +E + + LE E+
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV-FRKKPHPVETLKGADVHLECEL 216
Query: 351 T-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ V W KD +E+++ KK I + + + I N+ D GEY C
Sbjct: 217 QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVT-LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
PP F KK +P + E T E ++ PE +LWY + +QE+ + S
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS----FVES 153
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
V+++ + ++ + G YT A N G A +KV E P + H V +G
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGAD 209
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
L ++ G P +V W+KD + + K +I SE ++ ++ + D G Y K +N
Sbjct: 210 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Query: 188 KEGTVESAANLNV 200
G+ ++ +
Sbjct: 270 DVGSYTCVGSITL 282
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 41/257 (15%)
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ +T+ + K + G YT A N G+ + V P LEP V + E
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-APPRFIKKLEPSRIVK--QDEHT 117
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
++GG P KV WYKD I++ +++ ++ L + S +D G Y+ + N
Sbjct: 118 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 189 EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSIT 248
G+ S+ +L V E P + H V
Sbjct: 178 AGSASSSTSLKVK--------------------------------EPPVFRKKPHPVETL 205
Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSV 305
+G L ++ G P +V W+KD + + K +I SE ++ ++ + D G Y
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Query: 306 KVTNKEGTVESAANLNV 322
K +N G+ ++ +
Sbjct: 266 KASNDVGSYTCVGSITL 282
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 114/281 (40%), Gaps = 49/281 (17%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKKQKL 472
PP + V ++ E +F+ +T G A +K W KD +EI N +++ L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
+ DAG+Y+C + K+S A L V+AP F+ KL +V ++ +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPP-RFIKKLEPSRIVKQDEHTRYECK 122
Query: 532 L-SSPDIQVKW-----------------------LNLFIVP-------TCPLGSPG---- 556
+ SP+I+V W L ++ + TC +
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 557 --------QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
+ P+F ++ + + L +++ +P + W ++ + L S K + +
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ + + DS D G+Y+ A+N++GS T +T+
Sbjct: 243 SENFLTSIHILNVDS-ADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 12/277 (4%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 295
L+P+ V + GES V G K+ W KD + I+ + ++T +NT TLT+++
Sbjct: 10 LKPV-SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVT-SD 353
+ D G+Y+ +N G +A L V Q FIKKL+ VK+ E+ E ++ S
Sbjct: 69 TKGDAGQYTCYASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP 127
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
+ V W+KD EI+ S K + ++ L + N+SV D G+YTC + SA +
Sbjct: 128 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
Query: 412 -VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKK 469
V+ PP V+ + E EL V W+KD +E+ + + +
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
+ I + D GEY C+ D G ++T++A
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 125/290 (43%), Gaps = 42/290 (14%)
Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQC 173
L+P+ V + GES V G K+ W KD + I+ + ++T +NT TLT+++
Sbjct: 10 LKPV-SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKP 233
+ D G+Y+ +N G +A L V
Sbjct: 69 TKGDAGQYTCYASNVAGKDSCSAQLGVQ-------------------------------- 96
Query: 234 EKPSILEPLHDVSIT-EGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHT 289
E P ++ L I + E ++GG P KV WYKD I++ +++ ++
Sbjct: 97 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
L + S +D G Y+ + N G+ S+ +L V + F KK +E + + LE E
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV-FRKKPHPVETLKGADVHLECE 215
Query: 350 VT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ + V W KD +E+++ KK I + + + I N+ D GEY C
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVT-LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
PP F KK +P + E T E ++ PE +LWY + +QE+ + S
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS----FVES 153
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
V+++ + ++ + G YT A N G A +KV E P + H V +G
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK----EPPVFRKKPHPVETLKGAD 209
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
L ++ G P +V W+KD + + K +I SE ++ ++ + D G Y K +N
Sbjct: 210 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
Query: 188 KEGTVESAANLNV 200
G+ ++ +
Sbjct: 270 DVGSYTCVGSITL 282
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 43/258 (16%)
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT-EGES 130
+ +T+ + K + G YT A N G+ + V E P ++ L I + E
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQDEH 116
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
++GG P KV WYKD I++ +++ ++ L + S +D G Y+ + N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 188 KEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSI 247
G+ S+ +L V E P + H V
Sbjct: 177 AAGSASSSTSLKVK--------------------------------EPPVFRKKPHPVET 204
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYS 304
+G L ++ G P +V W+KD + + K +I SE ++ ++ + D G Y
Sbjct: 205 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 264
Query: 305 VKVTNKEGTVESAANLNV 322
K +N G+ ++ +
Sbjct: 265 CKASNDVGSYTCVGSITL 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 113/281 (40%), Gaps = 49/281 (17%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKKQKL 472
PP + V ++ E +F+ +T G A +K W KD +EI N +++ L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
+ DAG+Y+C + K+S A L V+ P F+ KL +V ++ +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP-RFIKKLEPSRIVKQDEHTRYECK 122
Query: 532 L-SSPDIQVKW-----------------------LNLFIVP-------TCPLGSPG---- 556
+ SP+I+V W L ++ + TC +
Sbjct: 123 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 557 --------QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
+ P+F ++ + + L +++ +P + W ++ + L S K + +
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ + + DS D G+Y+ A+N++GS T +T+
Sbjct: 243 SENFLTSIHILNVDS-ADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 36/219 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDR--QITSEKNTHTL 168
E P I + + DV+ GE+A LS Q+ G P P ++WY+ GK LI+ R +++S+ THTL
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
T++ +D+G Y+ TN+ G VE+++ L + T Q
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA----------------------TPQF 103
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-ITSEKNT 287
+ G P K + G + L V G P P + W+ KL+++ + IT E
Sbjct: 104 HPGYPLKEKYYGAV-------GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 288 HTLTLIQCSTKDK---GRYSVKVTNKEGTVESAANLNVD 323
H L+ + + K G+Y V+++N GTV++ ++ +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
+ G P K+ K V + L ++V P PD+ WY G+ L ++ + S
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
H+ +T+ + ++ +EGVYT +A N GE + + + P PL +
Sbjct: 63 HT----LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY--PLKEKYYGA 116
Query: 128 -GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-ITSEKNTHTLTLIQCSTKDK---GRYS 182
G + L V G P P + W+ KL+++ + IT E H L+ + + K G+Y
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 183 VKVTNKEGTVESAANLNVD 201
V+++N GTV++ ++ +
Sbjct: 177 VQLSNVFGTVDAILDVEIQ 195
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 88/230 (38%), Gaps = 57/230 (24%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLI 473
P I ++DV E A ++ G L +KWY+ GKE+ S +S DG+ L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 474 IFSAGLEDAGEYSC-RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
+ + ED G Y+C + G+ E+ + L ++A
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA--------------------------- 99
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAPSIV 591
+P P PL +EK G T+RL P P++
Sbjct: 100 -TPQFH---------PGYPL-------------KEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 592 WFRNNKPLLSSPKKREIFDGENII-LELKEADSETDAGDYKVVATNELGS 640
WF K LL + + I + E+ L +K +T AG YKV +N G+
Sbjct: 137 WFHGQK-LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
G+AP + ++ T K +L ++ P P I W+R K L+ S K + DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 616 LELKEADSETDAGDYKVVATNELG 639
L + + E D G Y +ATNE+G
Sbjct: 65 LTVMTEEQE-DEGVYTCIATNEVG 87
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 325 GKAEFIKK-LDDLEVKERENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRK 382
G+A I+K + D+ K E A L ++ D+KW++ G+E+ S+K + G
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 383 LLIRNISVHDEGEYTCSLPDQ----ETSAELNVVELPPEI--SVPLQDVKVSRDEKASFE 436
L + DEG YTC ++ ETS++L +++ P+ PL++ K ++
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKL-LLQATPQFHPGYPLKE-KYYGAVGSTLR 122
Query: 437 IELT---KGDALVKWYKDGKEIAFSENVTL 463
+ + + + W+ K + SEN+T+
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITI 152
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 114/494 (23%), Positives = 190/494 (38%), Gaps = 73/494 (14%)
Query: 65 SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI-----LEP 119
S+M ++S +TI + + ++G+YT A + K V+V+ EKP + +E
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMES 338
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 179
L V T GE + + G P P+++WYK+G ++ K H LT+++ S +D G
Sbjct: 339 L--VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEVSERDTG 394
Query: 180 RYSVKVTN-----KEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPE 234
Y+V +TN K+ V S L P
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH 454
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL---- 290
L + E AV SV P P EW +I KN L
Sbjct: 455 HIHWYWQLEEECANEPSQAV-SVT---NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGK 510
Query: 291 -----TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAV 345
TL+ + Y + NK G E + +V +G I D++ E+E+
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPE--ITLQPDMQPTEQESVS 568
Query: 346 LEVEVTSDKA---DVKWFKDGQE--------------------IKTSKKVTIEKKGTIRK 382
L T+D++ ++ W+K G + K + + I
Sbjct: 569 L--WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 383 LLIRNISVHDEGEYTCSLPDQETS------AELNVVE-LPPEISVPLQDVKVSRDEKASF 435
+ ++N S+ D+G+Y C D++T +L V+E + P I+ L++ S E S
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE--SI 684
Query: 436 EIELTKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT 492
E+ T + W+KD + + + L DG + L I ED G Y+C+
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-DGNR-NLTIRRVRKEDEGLYTCQACSV 742
Query: 493 -GDKESKATLTVEA 505
G + +A +E
Sbjct: 743 LGCAKVEAFFIIEG 756
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 49 NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
N + L + + +FS+ ++ + I+ +K+ +++G Y +A++R+ + + + ++
Sbjct: 605 NLDTLWKLNATMFSNSTND---ILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTV 661
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHT 167
+ P+I L + + + GES +S G P P++ W+KD + L++D I +
Sbjct: 662 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 721
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAA 196
LT+ + +D+G Y+ + + G + A
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEA 750
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 621
+E E TV E+ +R+ AK P P I W++N PL S+ I G +L + E
Sbjct: 336 MESLVEATVGER--VRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGH--VLTIMEV 388
Query: 622 DSETDAGDYKVVATNEL 638
SE D G+Y V+ TN +
Sbjct: 389 -SERDTGNYTVILTNPI 404
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
V + + + P P++ WY NG PL E++ + + ++TI + +R+ G YTV
Sbjct: 348 VRIPAKYLGYPPPEIKWYKNGIPL-ESNHTIKAGH--------VLTIMEVSERDTGNYTV 398
Query: 90 VAKNREGEAKMDIPVKVNTGKPEK---PSILEPLHDVSITEGESAVLSVQVGGEPSP-KV 145
+ N + K V + P + S++ P+ S G + L+ V P P +
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD--SYQYGTTQTLTCTVYAIPPPHHI 456
Query: 146 EWY 148
WY
Sbjct: 457 HWY 459
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
+LE + PT + + + + P P ++W+ + E L E +V D +
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 720
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD 101
+TI+ ++K +EG+YT A + G AK++
Sbjct: 721 N------LTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLT 723
Query: 618 LKEADSETDAGDYKVVATNELGSA 641
++ E D G Y A + LG A
Sbjct: 724 IRRVRKE-DEGLYTCQACSVLGCA 746
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEW--------YKDGKLI-KDRQITS----E 284
+L P H + ++ GE VL+ E + +++ ++ KL+ +D + S +
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ----GKAEFIKKLDDLEVKE 340
K TLT+ + D+G Y+ ++ T +++ + V + ++ L + V E
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGE 346
Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
R + + ++KW+K+G ++++ + K G + L I +S D G YT L
Sbjct: 347 RVR-IPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHV--LTIMEVSERDTGNYTVIL 400
Query: 401 PD-----QETSAELNVVELPPEI 418
+ +++ VV +PP+I
Sbjct: 401 TNPISKEKQSHVVSLVVYVPPQI 423
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEV 768
GE ++I ++ PPP+ +W NG + + +K L +EV ER+ V +
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAG----HVLTIMEVSERDTGNYTVIL 400
Query: 769 TS 770
T+
Sbjct: 401 TN 402
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G+ E ++ + DL VK E AV + EV+ +K KW+K+G E++ SK++TI G KL+
Sbjct: 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 385 IRNISVHDEGEYTCSLPDQET---SAELNVVEL 414
I ++ DEG+YT +PD SA+LN +E+
Sbjct: 67 IDDVRPEDEGDYTF-VPDGYALSLSAKLNFLEI 98
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
E+ + D+ V E+A F+ E++ KWYK+G E+ S+ +T+S G+ KL+I
Sbjct: 10 EVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDD 69
Query: 477 AGLEDAGEYS 486
ED G+Y+
Sbjct: 70 VRPEDEGDYT 79
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 743 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNN 781
G+ E ++ + DL VK E AV + EV+ +K KW+KN
Sbjct: 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNG 45
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK 81
V AE+ + V LE + P P +LW + D + ++ H I+ I + ++
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILW-------RRADGKPIARKARRHKSNGILEIPNFQQ 267
Query: 82 REEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG 139
+ G Y VA+N G+ AK + +P+ ++ ++D+ + ES + G
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANG 321
Query: 140 EPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
P P W K+G L +DR I E+ T +T++ S D G Y NK G + S+A
Sbjct: 322 RPKPTYRWLKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAE 378
Query: 198 LNV 200
L+V
Sbjct: 379 LSV 381
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 105/295 (35%), Gaps = 68/295 (23%)
Query: 46 WYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105
W +N P + D F Q + Y++ ++K + G YT V N K+
Sbjct: 137 WIFNEYPSYQ-DNRRFVSQETGNLYIA-----KVEKSDVGNYTCVVTNTVTNHKVL---- 186
Query: 106 VNTGKPEKPSIL---------EPLHDVSITE------GESAVLSVQVGGEPSPKVEWYK- 149
P P IL EP +V E G + L G P P + W +
Sbjct: 187 ----GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242
Query: 150 DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXX 209
DGK I R+ K+ L + +D G Y N G + L
Sbjct: 243 DGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------- 294
Query: 210 XXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 269
+P+ ++ ++D+ + ES + G P P W
Sbjct: 295 -------------------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 329
Query: 270 YKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
K+G L +DR I E+ T +T++ S D G Y NK G + S+A L+V
Sbjct: 330 LKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAELSV 381
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 249 EGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
+G + L G P P + W + DGK I R+ K+ L + +D G Y
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVA 277
Query: 308 TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI 366
N G + L + +++ ++D+ V E+ E + K +W K+G +
Sbjct: 278 ENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 367 KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE----TSAELNVV 412
T ++ IE +GT+ + I N+S D G Y C ++ +SAEL+V+
Sbjct: 337 LTRDRIQIE-QGTL-NITIVNLS--DAGMYQCVAENKHGVIFSSAELSVI 382
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 564 RFEEKTVKEKGT-IRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEA 621
+F E EKGT ++L +P P+I+W R + KP+ ++ + N ILE+
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK----SNGILEIPNF 265
Query: 622 DSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDI 664
E DAG Y+ VA N G ++T + IN I +
Sbjct: 266 QQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHV 307
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 554 SPGQAPLFIERFEEKTV---KEKGTIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIF 609
PG P+F++ E+ ++L +VK +P P I W N + + + +
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 610 DGENIILELKEADSETDAGDYKVVATNELGS 640
DG L + + DAG Y+ +ATN G+
Sbjct: 61 DGS---LLINNPNKTQDAGTYQCIATNSFGT 88
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 86/430 (20%), Positives = 145/430 (33%), Gaps = 105/430 (24%)
Query: 255 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ--CSTKDKGRYSVKVTNKEG 312
LS +V G P P + W +G + LI T+D G Y TN G
Sbjct: 28 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 87
Query: 313 TVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKW---FKDGQEIKT 368
T+ S A L + + + V+ + VL ++ + F + +
Sbjct: 88 TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD 147
Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVS 428
+++ ++ G L I + D G YTC + + T+ ++ L P + L++ V
Sbjct: 148 NRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVTNHKV----LGPPTPLILRNDGVM 200
Query: 429 RDEKASFEIELT------KGDAL-------------VKWYK-DGKEIA-----FSENVTL 463
+ + E++ KG + + W + DGK IA N L
Sbjct: 201 GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGIL 260
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
I +Q EDAG Y C ++ G +K LT A
Sbjct: 261 EIPNFQQ---------EDAGSYECVAENSRGKNVAKGQLTFYA----------------- 294
Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
P +++ + V + ++ K
Sbjct: 295 -----------------------------------QPNWVQIINDIHVAMEESVFWECKA 319
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
P P+ W +N PLL+ R+ E L + + +DAG Y+ VA N+ G
Sbjct: 320 NGRPKPTYRWLKNGDPLLT----RDRIQIEQGTLNITIVNL-SDAGMYQCVAENKHGVIF 374
Query: 643 HGARVTVDVE 652
A ++V E
Sbjct: 375 SSAELSVIAE 384
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
P + + ++ V E + P+P W NG+PL D + +Q ++ ++
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLN--IT 352
Query: 73 IVTIKSIKKREEGVYTVVAKNREG 96
IV + + G+Y VA+N+ G
Sbjct: 353 IVNLS-----DAGMYQCVAENKHG 371
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
G+ + P I+E D+ + + E A L+ +V G+P P +EW+KDG+ + T+EK +H
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHR 59
Query: 290 L-----------TLIQCSTKDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLE 337
+ T+ +D G Y N+ G V A+L + + +F + D
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR 119
Query: 338 VKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISV 390
V + E A+LE + + W KDG + K ++ +R LLI N+
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 391 HDEGEYTC 398
DEG Y C
Sbjct: 180 IDEGNYKC 187
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 25 EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE 84
++N TL ++ PEP + W+ +GEP+ ++ Q + T++ K+++
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDG 81
Query: 85 GVYTVVAKNREGE-----AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VG 138
G Y VAKNR G+ A + I V + + +EP D + +GE+A+L
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQIAVLRDDFR------VEP-KDTRVAKGETALLECGPPK 134
Query: 139 GEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK--------DKGRYSVKVTNKEG 190
G P P + W KDG + D + S + + ++ D+G Y N G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 191 TVESA 195
T ES+
Sbjct: 195 TRESS 199
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR---E 607
PL Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK +
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSA 641
DG + E D G+Y VA N +G A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 56/231 (24%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 167
G+ + P I+E D+ + + E A L+ +V G+P P +EW+KDG+ + T+EK +H
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHR 59
Query: 168 L-----------TLIQCSTKDKGRYSVKVTNKEG-TVESAANLNVDXXXXXXXXXXXXXX 215
+ T+ +D G Y N+ G V A+L +
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI--------------- 104
Query: 216 XXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VGGEPSPKVEWYKDGK 274
D +V EP D + +GE+A+L G P P + W KDG
Sbjct: 105 ----AVLRDDFRV-----------EP-KDTRVAKGETALLECGPPKGIPEPTLIWIKDGV 148
Query: 275 LIKDRQITSEKNTHTLTLIQCSTK--------DKGRYSVKVTNKEGTVESA 317
+ D + S + + ++ D+G Y N GT ES+
Sbjct: 149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 71/233 (30%)
Query: 424 DVKVSRDEKASFEIEL-TKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGL--- 479
D+ V ++E A+ ++ K + ++W+KDG+ ++ +E + + K L +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 480 -EDAGEYSC----RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
+D GEY C RVG + A+ Q+ +
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRH-----------------------------ASLQIAVLR 108
Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
D +V E + + K + + K P P+++W +
Sbjct: 109 DDFRV-----------------------EPKDTRVAKGETALLECGPPKGIPEPTLIWIK 145
Query: 595 NNKPL-------LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640
+ PL + + I DG N+++ E D G+YK +A N +G+
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP---IDEGNYKCIAQNLVGT 195
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
G+ + P I+E D+ + + E A L+ +V G+P P +EW+KDG+ + T+EK +H
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHR 59
Query: 290 L-----------TLIQCSTKDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLE 337
+ T+ +D G Y N+ G V A+L + + +F + D
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR 119
Query: 338 VKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISV 390
V + E A+LE + + W KDG + K ++ +R LLI N+
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP 179
Query: 391 HDEGEYTC 398
DEG Y C
Sbjct: 180 IDEGNYKC 187
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 21/185 (11%)
Query: 25 EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE 84
++N TL ++ PEP + W+ +GEP+ ++ Q + T++ K+++
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDG 81
Query: 85 GVYTVVAKNREGE-----AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VG 138
G Y VAKNR G+ A + I V + + +EP D + +GE+A+L
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQIAVLRDDFR------VEP-KDTRVAKGETALLECGPPK 134
Query: 139 GEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK--------DKGRYSVKVTNKEG 190
G P P + W KDG + D + S + + ++ D+G Y N G
Sbjct: 135 GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Query: 191 TVESA 195
T ES+
Sbjct: 195 TRESS 199
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR---E 607
PL Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK +
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSA 641
DG + E D G+Y VA N +G A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 56/231 (24%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 167
G+ + P I+E D+ + + E A L+ +V G+P P +EW+KDG+ + T+EK +H
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVS----TNEKKSHR 59
Query: 168 L-----------TLIQCSTKDKGRYSVKVTNKEG-TVESAANLNVDXXXXXXXXXXXXXX 215
+ T+ +D G Y N+ G V A+L +
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI--------------- 104
Query: 216 XXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VGGEPSPKVEWYKDGK 274
D +V EP D + +GE+A+L G P P + W KDG
Sbjct: 105 ----AVLRDDFRV-----------EP-KDTRVAKGETALLECGPPKGIPEPTLIWIKDGV 148
Query: 275 LIKDRQITSEKNTHTLTLIQCSTK--------DKGRYSVKVTNKEGTVESA 317
+ D + S + + ++ D+G Y N GT ES+
Sbjct: 149 PLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 71/233 (30%)
Query: 424 DVKVSRDEKASFEIEL-TKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGL--- 479
D+ V ++E A+ ++ K + ++W+KDG+ ++ +E + + K L +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 480 -EDAGEYSC----RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
+D GEY C RVG + A+ Q+ +
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRH-----------------------------ASLQIAVLR 108
Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
D +V E + + K + + K P P+++W +
Sbjct: 109 DDFRV-----------------------EPKDTRVAKGETALLECGPPKGIPEPTLIWIK 145
Query: 595 NNKPL-------LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640
+ PL + + I DG N+++ E D G+YK +A N +G+
Sbjct: 146 DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEP---IDEGNYKCIAQNLVGT 195
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK 81
V AE+ + V LE + P P +LW + D + ++ H I+ I + ++
Sbjct: 214 VPAEKGTTVKLECFALGNPVPTILW-------RRADGKPIARKARRHKSNGILEIPNFQQ 266
Query: 82 REEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG 139
+ G Y VA+N G+ AK + +P+ ++ ++D+ + ES + G
Sbjct: 267 EDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIINDIHVAMEESVFWECKANG 320
Query: 140 EPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
P P W K+G L +DR I E+ T +T++ S D G Y NK G + S+A
Sbjct: 321 RPKPTYRWLKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAE 377
Query: 198 LNV 200
L+V
Sbjct: 378 LSV 380
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 105/295 (35%), Gaps = 68/295 (23%)
Query: 46 WYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105
W +N P + D F Q + Y++ ++K + G YT V N K+
Sbjct: 136 WIFNEYPSYQ-DNRRFVSQETGNLYIA-----KVEKSDVGNYTCVVTNTVTNHKVL---- 185
Query: 106 VNTGKPEKPSIL---------EPLHDVSITE------GESAVLSVQVGGEPSPKVEWYK- 149
P P IL EP +V E G + L G P P + W +
Sbjct: 186 ----GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 241
Query: 150 DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXX 209
DGK I R+ K+ L + +D G Y N G + L
Sbjct: 242 DGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------- 293
Query: 210 XXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 269
+P+ ++ ++D+ + ES + G P P W
Sbjct: 294 -------------------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW 328
Query: 270 YKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
K+G L +DR I E+ T +T++ S D G Y NK G + S+A L+V
Sbjct: 329 LKNGDPLLTRDR-IQIEQGTLNITIVNLS--DAGMYQCVAENKHGVIFSSAELSV 380
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 249 EGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
+G + L G P P + W + DGK I R+ K+ L + +D G Y
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGKPIA-RKARRHKSNGILEIPNFQQEDAGSYECVA 276
Query: 308 TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI 366
N G + L + +++ ++D+ V E+ E + K +W K+G +
Sbjct: 277 ENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 367 KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE----TSAELNVV 412
T ++ IE +GT+ + I N+S D G Y C ++ +SAEL+V+
Sbjct: 336 LTRDRIQIE-QGTL-NITIVNLS--DAGMYQCVAENKHGVIFSSAELSVI 381
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 564 RFEEKTVKEKGT-IRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEA 621
+F E EKGT ++L +P P+I+W R + KP+ ++ + N ILE+
Sbjct: 209 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK----SNGILEIPNF 264
Query: 622 DSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDI 664
E DAG Y+ VA N G ++T + IN I +
Sbjct: 265 QQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHV 306
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 555 PGQAPLFIERFEEKTV---KEKGTIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIFD 610
PG P+F++ E+ ++L +VK +P P I W N + + + + D
Sbjct: 1 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 60
Query: 611 GENIILELKEADSETDAGDYKVVATNELGS 640
G L + + DAG Y+ +ATN G+
Sbjct: 61 GS---LLINNPNKTQDAGTYQCIATNSFGT 87
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 86/430 (20%), Positives = 145/430 (33%), Gaps = 105/430 (24%)
Query: 255 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ--CSTKDKGRYSVKVTNKEG 312
LS +V G P P + W +G + LI T+D G Y TN G
Sbjct: 27 LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 86
Query: 313 TVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKW---FKDGQEIKT 368
T+ S A L + + + V+ + VL ++ + F + +
Sbjct: 87 TIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD 146
Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVS 428
+++ ++ G L I + D G YTC + + T+ ++ L P + L++ V
Sbjct: 147 NRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVTNHKV----LGPPTPLILRNDGVM 199
Query: 429 RDEKASFEIELT------KGDAL-------------VKWYK-DGKEIA-----FSENVTL 463
+ + E++ KG + + W + DGK IA N L
Sbjct: 200 GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGIL 259
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
I +Q EDAG Y C ++ G +K LT A
Sbjct: 260 EIPNFQQ---------EDAGSYECVAENSRGKNVAKGQLTFYA----------------- 293
Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
P +++ + V + ++ K
Sbjct: 294 -----------------------------------QPNWVQIINDIHVAMEESVFWECKA 318
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
P P+ W +N PLL+ R+ E L + + +DAG Y+ VA N+ G
Sbjct: 319 NGRPKPTYRWLKNGDPLLT----RDRIQIEQGTLNITIVNL-SDAGMYQCVAENKHGVIF 373
Query: 643 HGARVTVDVE 652
A ++V E
Sbjct: 374 SSAELSVIAE 383
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
P + + ++ V E + P+P W NG+PL D + +Q ++ ++
Sbjct: 295 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLN--IT 351
Query: 73 IVTIKSIKKREEGVYTVVAKNREG 96
IV + + G+Y VA+N+ G
Sbjct: 352 IVNLS-----DAGMYQCVAENKHG 370
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G F + L DLEV E A L ++S A VKW ++ K ++ ++G + +L+
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
+RN+ D G Y+CS DQ TSA L V LP
Sbjct: 67 VRNLRPQDSGRYSCSFGDQTTSATLTVTALP 97
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P L+D++V A+ L+ A VKW + + +L +G +L++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ +D+G YSC GD+ + ATLTV A
Sbjct: 68 RNLRPQDSGRYSCSF---GDQTTSATLTVTA 95
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 290
P+ P I PL V E A V P P++ W ++ LIK D + + +N L
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 291 TLIQCSTKDKGRYSVKVTNK-EGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
T++ D G Y N G VES L V K + + ++++ E AVL
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-KPKITRPPINVKIIEGLKAVLPCT 123
Query: 350 VTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
+ K V W K ++ + ++ + + G++R I N+ D G+Y C + +A
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESGSLR---IHNVQKEDAGQYRCVAKNSLGTAY 180
Query: 409 LNVVELPPEI 418
+V+L E+
Sbjct: 181 SKLVKLEVEV 190
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 74/209 (35%), Gaps = 35/209 (16%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 168
P+ P I PL V E A V P P++ W ++ LIK D + + +N L
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 169 TLIQCSTKDKGRYSVKVTNK-EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQ 227
T++ D G Y N G VES L V
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------------------------- 99
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
KP I P +V I EG AVL G P P V W K +++ + +
Sbjct: 100 -------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
+L + +D G+Y N GT S
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYS 181
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 31 TLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV 90
T + + P+P++ W N ++ +F + + ++TI S++ ++G+Y
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIK-----LFDTRYSIRENGQLLTILSVEDSDDGIYCCT 80
Query: 91 AKNREG---EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 147
A N G E+ + VK+ KP I P +V I EG AVL G P P V W
Sbjct: 81 ANNGVGGAVESCGALQVKM------KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 148 YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 194
K +++ + + +L + +D G+Y N GT S
Sbjct: 135 IKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYS 181
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 578 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637
M V++ P P I W RN + + I + ++ L DS D G Y A N
Sbjct: 27 FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDS--DDGIYCCTANNG 84
Query: 638 LGSA--THGARVTVDVEKVGRPPIN 660
+G A + GA K+ RPPIN
Sbjct: 85 VGGAVESCGALQVKMKPKITRPPIN 109
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 86/251 (34%), Gaps = 83/251 (33%)
Query: 416 PEISVPLQDVKVSRDEKASF----------EIELTKGDALVKWYKDGKEIAFSENVTLSI 465
P I+ PL+ V +E A+F EI T+ L+K + + SI
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF----------DTRYSI 57
Query: 466 DGKKQKLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHL 523
Q L I S D G Y C G G ES L V+
Sbjct: 58 RENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK------------------- 98
Query: 524 GDATFQVELSSPDIQVKWLNLF--IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
+ +++ P I VK + ++P +G+P
Sbjct: 99 ----MKPKITRPPINVKIIEGLKAVLPCTTMGNP-------------------------- 128
Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
PS+ W + + L + + + G L + E DAG Y+ VA N LG+A
Sbjct: 129 -----KPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKE-DAGQYRCVAKNSLGTA 179
Query: 642 THGARVTVDVE 652
+ V ++VE
Sbjct: 180 -YSKLVKLEVE 189
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G F + L DLEV E A L ++S A VKW ++ K ++ ++G +L+
Sbjct: 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAXLELV 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
+RN+ D G Y+CS DQ TSA L V LP
Sbjct: 67 VRNLRPQDSGRYSCSFGDQTTSATLTVTALP 97
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P L+D++V A+ L+ A VKW + + +L +G +L++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAXLELVV 67
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ +D+G YSC GD+ + ATLTV A
Sbjct: 68 RNLRPQDSGRYSCSF---GDQTTSATLTVTA 95
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 126/281 (44%), Gaps = 28/281 (9%)
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWY--KDGKLIKDRQITSEKN--THTLTLIQCST 297
L V ++ GES + GEP ++WY + K+I +++ +K LT+ +
Sbjct: 11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 69
Query: 298 KDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA- 355
+D G Y + T+ +G T E+ L + Q K F + + E K+ E+A + V+S A
Sbjct: 70 EDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 128
Query: 356 DVKWFKDGQEIKT---SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELN-- 410
V W +E+ T ++ + + ++ DEG Y C E E++
Sbjct: 129 AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS----DEGIYRCE-GRVEARGEIDFR 183
Query: 411 ----VVELPPEISVPLQDVKVS--RDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTL 463
+V +PP IS+P + + R E+ +F + + + W+++GK I EN
Sbjct: 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKY 241
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTV 503
+ G +L + + D G Y CR + G+ E +A L V
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
TF + P ++ + + R+ + P P + W Y+ E + SD +
Sbjct: 100 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV-----TTISDNRFAMLANNN 154
Query: 74 VTIKSIKKREEGVYTVVAK-NREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ I +I K +EG+Y + GE DI V VN P S+ + + + GE
Sbjct: 155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV--PPAISMPQKSFNATAERGEEM 212
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTLIQCSTKDKGRYSVKVTNKEG 190
S + G P P + W+++GKLI++ + K ++T LT+ D G Y + TNK G
Sbjct: 213 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 272
Query: 191 TVESAANLNV 200
E A L V
Sbjct: 273 EDEKQAFLQV 282
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 115/297 (38%), Gaps = 50/297 (16%)
Query: 36 LVAVPEPDLLWYYN--GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93
A+ EP+ + +YN GE + T VV + S +TI + + G+Y A +
Sbjct: 26 CTAIGEPESIDWYNPQGEKIISTQRVVVQKEG----VRSRLTIYNANIEDAGIYRCQATD 81
Query: 94 REGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 153
+G+ + V +K + E + +GE A + +V P+P V W L
Sbjct: 82 AKGQTQ---EATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW-----L 133
Query: 154 IKDRQITSEKNTHTLTLIQCST-------KDKGRYSVKVTNKEGTVESAANLNVDXXXXX 206
+ ++T+ + L + D+G Y EG VE+ ++
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEARGEID------- 181
Query: 207 XXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 266
+ V P S+ + + + GE S + G P P
Sbjct: 182 ----------------FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225
Query: 267 VEWYKDGKLIKDRQITSEKNTHT-LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ W+++GKLI++ + K ++T LT+ D G Y + TNK G E A L V
Sbjct: 226 ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
++++ L V++S E F + WY G++I ++ V + +G + +L I+
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65
Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
+A +EDAG Y C+ D + +AT+ +E
Sbjct: 66 NANIEDAGIYRCQATDAKGQTQEATVVLE 94
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 64/299 (21%)
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWY--KDGKLIKDRQITSEKN--THTLTLIQCST 175
L V ++ GES + GEP ++WY + K+I +++ +K LT+ +
Sbjct: 11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 69
Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEK 235
+D G Y + T+ +G + A + L+ Q K
Sbjct: 70 EDAGIYRCQATDAKGQTQEATVV------------------------LEIYQ-------K 98
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 295
+ E + +GE A + +V P+P V W L + ++T+ + L
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW-----LYHNEEVTTISDNRFAMLANN 153
Query: 296 ST-------KDKGRYSVKVTNKEGTVESAANL---------NVDQGKAEFIKKLDDLEVK 339
+ D+G Y EG VE+ + NV + K + +
Sbjct: 154 NLQILNINKSDEGIYRC-----EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208
Query: 340 ERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
E S + + WF++G+ I+ ++K + KG+ +L +RNI D G Y C
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVC 265
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
ER EE T + SP P+I WFRN K L ++ I G N L ++
Sbjct: 207 ERGEEMT--------FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVRNII 256
Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVE 652
+ +D G Y ATN+ G A + V V+
Sbjct: 257 N-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 96/255 (37%), Gaps = 49/255 (19%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
+ + D Y V+ TN+ G+V A+L V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEV-------------------------- 98
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
K P LE + V GE + + G+P P + W K LI + Q+ +
Sbjct: 99 -PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 286 NTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ +L KD G Y V N+ G +DQ E LD +V +
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFG---------IDQKTVE----LDVADVPDPPRG 204
Query: 345 VLEVEVTSDKADVKW 359
V +V+ D ++ W
Sbjct: 205 VKVSDVSRDSVNLTW 219
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P F ++ + + S TL ++ P+P + WY G+ + D + + Q Y
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGY 61
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA------KMDIPVKVNTGKPEKPSILEPLHDVS 124
++ I S+ + VY V A N+ G ++++P K++ P LE + V
Sbjct: 62 HQLI-IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL-----PKTLEGMGAVH 115
Query: 125 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQ-CSTKDKGR 180
GE + + G+P P + W K LI + Q+ ++ +L KD G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 181 YSVKVTNKEGTVESAANLNV 200
Y V N+ G + L+V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 18/211 (8%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD-QGKAEFIKKLDDL-EVKERENAVLEV 348
+ + D Y V+ TN+ G+V A+L V+ K K L+ + V V+ +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 349 EV-TSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN-ISVHDEGEYTCSLPDQ- 403
++ S K D + W K I + + + L+ N + D G Y ++
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 404 ---ETSAELNVVELP-PEISVPLQDVKVSRD 430
+ + EL+V ++P P V + D VSRD
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSD--VSRD 213
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP F E V+ + L+ KV P P + W+R K +++ K I + + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 618 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
L A ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSID---GKK 469
+ P L+++ V A+ ++T +VKWY+ GKEI ++ + I G
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI-IADGLKYRIQEFKGGY 61
Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPA 507
+LII S +DA Y R + G S A+L VE PA
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 36/218 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
+ + D Y V+ TN+ G+V A+L V+
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEV-------------------------- 96
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
K P LE + V GE + + G+P P + W K LI + Q+ +
Sbjct: 97 -PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 155
Query: 286 NTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ +L KD G Y V N+ G + L+V
Sbjct: 156 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 193
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P F ++ + + S TL ++ P+P + WY G+ + D + + Q Y
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGY 59
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA------KMDIPVKVNTGKPEKPSILEPLHDVS 124
++ I S+ + VY V A N+ G ++++P K++ P LE + V
Sbjct: 60 HQLI-IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL-----PKTLEGMGAVH 113
Query: 125 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQ-CSTKDKGR 180
GE + + G+P P + W K LI + Q+ ++ +L KD G
Sbjct: 114 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 173
Query: 181 YSVKVTNKEGTVESAANLNV 200
Y V N+ G + L+V
Sbjct: 174 YVVCAKNRFGIDQKTVELDV 193
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ + D Y V+ TN+ G+V A+L V+
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVE 95
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP F E V+ + L+ KV P P + W+R K +++ K I + + +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 618 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
L A ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 96
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSID---GKK 469
+ P L+++ V A+ ++T +VKWY+ GKEI ++ + I G
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI-IADGLKYRIQEFKGGY 59
Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPA 507
+LII S +DA Y R + G S A+L VE PA
Sbjct: 60 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 98
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
TF + P ++ + + R+ + P P + W Y+ E + SD +
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV-----TTISDNRFAMLANNN 58
Query: 74 VTIKSIKKREEGVYTVVAK-NREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ I +I K +EG+Y + GE DI V VN P S+ + + + GE
Sbjct: 59 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV--PPAISMPQKSFNATAERGEEM 116
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTLIQCSTKDKGRYSVKVTNKEG 190
S + G P P + W+++GKLI++ + K ++T LT+ D G Y + TNK G
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
Query: 191 TVESAANLNV 200
E A L V
Sbjct: 177 EDEKQAFLQV 186
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 236 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTL 292
P+I P + T GE S + G P P + W+++GKLI++ + K ++T LT+
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 156
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
D G Y + TNK G E A L V
Sbjct: 157 RNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 392 DEGEYTCSLPDQETSAELN------VVELPPEISVPLQDVKVS--RDEKASFEIELTKG- 442
DEG Y C E E++ +V +PP IS+P + + R E+ +F +
Sbjct: 68 DEGIYRCE-GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSP 126
Query: 443 DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD-TGDKESKATL 501
+ + W+++GK I EN + G +L + + D G Y CR + G+ E +A L
Sbjct: 127 EPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Query: 502 TV 503
V
Sbjct: 185 QV 186
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
ER EE T + SP P+I WFRN K L ++ I G N L ++
Sbjct: 111 ERGEEMT--------FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVRNII 160
Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVE 652
+ +D G Y ATN+ G A + V V+
Sbjct: 161 N-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCST-------KDKG 301
+GE A + +V P+P V W L + ++T+ + L + D+G
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSW-----LYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 70
Query: 302 RYSVKVTNKEGTVESAANL---------NVDQGKAEFIKKLDDLEVKERENAVLEVEVTS 352
Y EG VE+ + NV + K + + E S
Sbjct: 71 IYRC-----EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS 125
Query: 353 DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ + WF++G+ I+ ++K + KG+ +L +RNI D G Y C
Sbjct: 126 PEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVC 169
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G A IK L+D V E+ L E++ V W KD + I+ S+K + +GT+ L+
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVE 413
IR S+ D GEYTC + +++A L+V E
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTASLHVEE 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P I PL+D V+ E EL++ V W KD K I S+ + +G L+I
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
A L+DAGEY+C V + +S A+L VE
Sbjct: 68 RGASLKDAGEYTCEVEAS---KSTASLHVE 94
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 285
++G +I++PL D + GE L ++ +P V W KD K I+ Q + E
Sbjct: 2 SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG 60
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
L + S KD G Y+ +V + T A+L+V++
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVEE 95
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 163
++G +I++PL D + GE L ++ +P V W KD K I+ Q + E
Sbjct: 2 SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEG 60
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
L + S KD G Y+ +V + T A+L+V+
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKST----ASLHVE 94
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 83/218 (38%), Gaps = 36/218 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQV 228
+ + D Y V+ TN+ G+V A+L V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEV-------------------------- 98
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
K P LE + V GE + + G+P P + W K LI + Q+ +
Sbjct: 99 -PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 286 NTHTLTLIQ-CSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ +L KD G Y V N+ G + L+V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P F ++ + + S TL ++ P+P + WY G+ + D + + Q Y
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-ADGLKYRIQEFKGGY 61
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA------KMDIPVKVNTGKPEKPSILEPLHDVS 124
++ I S+ + VY V A N+ G ++++P K++ P LE + V
Sbjct: 62 HQLI-IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL-----PKTLEGMGAVH 115
Query: 125 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQ-CSTKDKGR 180
GE + + G+P P + W K LI + Q+ ++ +L KD G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 181 YSVKVTNKEGTVESAANLNV 200
Y V N+ G + L+V
Sbjct: 176 YVVCAKNRFGIDQKTVELDV 195
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ + D Y V+ TN+ G+V A+L V+
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP F E V+ + L+ KV P P + W+R K +++ K I + + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 618 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
L A ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSID---GKK 469
+ P L+++ V A+ ++T +VKWY+ GKEI ++ + I G
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI-IADGLKYRIQEFKGGY 61
Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPA 507
+LII S +DA Y R + G S A+L VE PA
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 23/199 (11%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--------DRQITSEKNT 287
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 288 HTLTLIQC--STKDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
L ++ S D+G Y N G V A+L V + +F + D+ V E A
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 345 VLEVEVTSDKAD--VKWFKDGQEI-KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--- 398
V+E + + + W KDG + +++TI KL+I D G+Y C
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG----KLMITYTRKSDAGKYVCVGT 185
Query: 399 -SLPDQETS-AELNVVELP 415
+ ++E+ AEL V+E P
Sbjct: 186 NMVGERESEVAELTVLERP 204
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
E PP + + + TL + P P + WY GE + ETD+ +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV-ETDKDDPRSHRMLL 64
Query: 69 SYVSIVTIKSIKKR----EEGVYTVVAKNREGEA-KMDIPVKVNTGKP---EKPSILEPL 120
S+ ++ + R +EGVY VA+N GEA D ++V + + PS
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS----- 119
Query: 121 HDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKD 177
DV + GE AV+ Q G P P + W KDG + KD +IT +T + S D
Sbjct: 120 -DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKS--D 176
Query: 178 KGRYSVKVTNKEGTVES-AANLNV 200
G+Y TN G ES A L V
Sbjct: 177 AGKYVCVGTNMVGERESEVAELTV 200
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
+ P P+I W ++ PL ++ I G+ +I + ++DAG Y V TN +G
Sbjct: 137 RGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR----KSDAGKYVCVGTNMVG 189
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 127/332 (38%), Gaps = 54/332 (16%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE---PLQETDE 58
S A ++ P F +T+ + A V L+ ++ P P + W N + P+
Sbjct: 111 SRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR 170
Query: 59 VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN----REGEAKMDIPVKVNTGKPEKP 114
VV + I ++ + GVY A+N R G + ++ + + G +
Sbjct: 171 VVVLPSGALQ-------ISRLQPGDSGVYRCSARNPASTRTGN-EAEVRILSDPGLHRQL 222
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QITSEKNTHTLTLIQC 173
L+ +V EG+ AVL V G P P W + ++I+ R + S L +
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV 282
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKP 233
+ D G Y+ VT K + ++A L T+ V
Sbjct: 283 TDDDSGTYTCVVTYKNENISASAEL--------------------------TVLVPPWFL 316
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 290
PS L + I E E A V G+P P V W K+G ++ QI N L
Sbjct: 317 NHPSNLYAYESMDI-EFECA-----VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRIL 370
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+++ D+G Y N+ G +S+A L V
Sbjct: 371 GVVK---SDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 119/291 (40%), Gaps = 32/291 (10%)
Query: 241 PLHDVSITE------GESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTHT 289
PL +S TE G++ +L +V G+P P + W K+ + + R +
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTV---ESAANLNVDQG---KAEFIKKLDDLEVKEREN 343
++ +Q D G Y N T E+ + D G + F+++ ++ E ++
Sbjct: 181 ISRLQ--PGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Query: 344 AVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP- 401
AVLE V+ W + + I+ K G+ LLI N++ D G YTC +
Sbjct: 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTY 296
Query: 402 ---DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAF 457
+ SAEL V+ +PP ++ FE ++ K V W K+G +
Sbjct: 297 KNENISASAELTVL-VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP 355
Query: 458 SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPA 507
S+ + + G L I D G Y C + G+ +S A L V PA
Sbjct: 356 SDYFQI-VGGS--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 85/411 (20%), Positives = 153/411 (37%), Gaps = 89/411 (21%)
Query: 265 PKVEWYKDGKLIK----DRQITSEKNTHTLTLIQCSTK---DKGRYSVKVT-NKEGTVES 316
P ++W KDG ++ DR+ + + I S D+G Y + + G++ S
Sbjct: 52 PVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111
Query: 317 AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA-DVKWFKDGQE---IKTSKKV 372
+ G F+ + + + + +L+ EV D + W K+ Q+ I +V
Sbjct: 112 RTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRV 171
Query: 373 TIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEK 432
+ G ++ I + D G Y CS + ++ N E+ +S P ++ ++
Sbjct: 172 VVLPSGALQ---ISRLQPGDSGVYRCSARNPASTRTGNEAEVR-ILSDPGLHRQLYFLQR 227
Query: 433 ASFEIELTKGDALVK------------WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE 480
S I + DA+++ W + G+E+ + S+ G L+I + +
Sbjct: 228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGS-NLLISNVTDD 285
Query: 481 DAGEYSCRVGDTGDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQV 539
D+G Y+C V + + A LTV LVP
Sbjct: 286 DSGTYTCVVTYKNENISASAELTV---------------LVP------------------ 312
Query: 540 KWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 599
P F+ E I V P P++ W +N +
Sbjct: 313 -------------------PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Query: 600 LSSPKKREIFDGENI-ILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ S +I G N+ IL + ++D G Y+ VA NE G+A A++ V
Sbjct: 354 IPS-DYFQIVGGSNLRILGVVKSDE----GFYQCVAENEAGNAQSSAQLIV 399
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 124/364 (34%), Gaps = 116/364 (31%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE----------DAGEYSC 487
E +G ++KW KDG +A L +D +KQ+L S ++ D G Y C
Sbjct: 46 ESDRGVPVIKWKKDGLILA------LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99
Query: 488 --RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT-FQVE-LSSPDIQVKW-- 541
+GD+G S+ + A + FL++ S+T +GD + E + P + W
Sbjct: 100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAF--MGDTVLLKCEVIGDPMPTIHWQK 157
Query: 542 ----LN-------LFIVPT-----------------CP-----------------LGSPG 556
LN + ++P+ C L PG
Sbjct: 158 NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPG 217
Query: 557 --QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
+ F++R E L V P PS W R + + KK + G N+
Sbjct: 218 LHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNL 277
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
++ D D+G Y V T + + + A +TV V PP ++H N
Sbjct: 278 LISNVTDD---DSGTYTCVVTYKNENISASAELTVLV-----PPW--------FLNHPSN 321
Query: 675 IDSPRQSTEVDVEKXXXXXXXXXXXXXXXXXXKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
+ + D++ E P P W NG V
Sbjct: 322 L-----------------------------YAYESMDIEFECAVSGKPVPTVNWMKNGDV 352
Query: 735 IVPS 738
++PS
Sbjct: 353 VIPS 356
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 327 AEFIKKLD-DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
A F K LD +V + VE+ K +VKW+K+GQEI+ S K E KG R L I
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFI 67
Query: 386 RNISVHDEGEYTCSLPDQETSAELNVVELP 415
N + D+ EY + D++ S EL V P
Sbjct: 68 NNCQMTDDSEYYVTAGDEKCSTELFVRSGP 97
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 426 KVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEY 485
+V + + F +EL VKWYK+G+EI S G ++ L I + + D EY
Sbjct: 19 QVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEY 78
Query: 486 SCRVGD 491
GD
Sbjct: 79 YVTAGD 84
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G A FI+ + + E +E AVL+ E+ S A V+W K + ++ + ++ + GT +L
Sbjct: 7 GPARFIEDVKNQEAREGATAVLQCEL-SKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVK 426
I +SV D GEY+C + TSA L V LP + QD+K
Sbjct: 66 IHGLSVADTGEYSCVCGQERTSATLTVRALPARFT---QDLK 104
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 422 LQDVK---VSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG 478
++DVK A + EL+K A V+W K + + + +L DG + +L I
Sbjct: 12 IEDVKNQEAREGATAVLQCELSKA-APVEWRKGSETLRGGDRYSLRQDGTRCELQIHGLS 70
Query: 479 LEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
+ D GEYSC G + + ATLTV A F L S
Sbjct: 71 VADTGEYSCVC---GQERTSATLTVRALPARFTQDLKS 105
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 115/316 (36%), Gaps = 53/316 (16%)
Query: 21 PVYAEENSEVTLEVRLV-AVPEPDLLWYYNG-EPLQETDEVVFSDQSDMHSYVSIVTIK- 77
PV +E + +TL+ +P P + W + EP+ + V D+ Y S V ++
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL--YFSNVMLQD 182
Query: 78 -----SIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEK-PSILEPLHDVS---ITEG 128
S R +T+ KN + V G E+ PS + P S + G
Sbjct: 183 MQTDYSCNARFHFTHTIQQKN-----PFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
+L G P+P + WYK G + + E L + S +D G Y +NK
Sbjct: 238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297
Query: 189 EGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSIT 248
G++ ++ V P L+ ++ +
Sbjct: 298 MGSIRHTISVRVKAA--------------------------------PYWLDEPKNLILA 325
Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR--YSVK 306
GE L + G P P V+W +G+ ++ + T+I T+ R Y
Sbjct: 326 PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN 385
Query: 307 VTNKEGTVESAANLNV 322
+N+ G + + A ++V
Sbjct: 386 TSNEHGYLLANAFVSV 401
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/404 (20%), Positives = 151/404 (37%), Gaps = 50/404 (12%)
Query: 12 PPTFSKKT-KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
PPT +K++ K + + +E P P W N + S + S
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR--RSG 73
Query: 71 VSIVTIKSIKKREE--GVYTVVAKNREGEAKMDIPVKVNTGK-PEKPSILEPLHDVSITE 127
++ +S + EE G Y A+N+ G A + +++ K P P E L V + E
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPK--ENLDPVVVQE 130
Query: 128 GESAVLSVQVG---GEPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
G A L++Q G PSP + W + +D++++ N Y
Sbjct: 131 G--APLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL-------------YF 175
Query: 183 VKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT--GKPEK-PSIL 239
V ++ + + N TL+V T G E+ PS +
Sbjct: 176 SNVMLQDMQTDYSCNARFHFTHTIQQKNPF------------TLKVLTTRGVAERTPSFM 223
Query: 240 EPLHDVS---ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
P S + G +L G P+P + WYK G + + E L + S
Sbjct: 224 YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS 283
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 355
+D G Y +NK G++ ++ V + ++ + +L + E+ L + K
Sbjct: 284 EEDSGEYFCLASNKMGSIRHTISVRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP 342
Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
V+W +G+ ++++ ++ ++ R+ + Y C+
Sbjct: 343 TVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAVYQCN 385
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 87/438 (19%), Positives = 149/438 (34%), Gaps = 108/438 (24%)
Query: 251 ESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCST----KDKGRY 303
++ ++ + G P+P W ++ + KD +++ + + TL + S + +G Y
Sbjct: 33 DNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEY 92
Query: 304 SVKVTNKEGT-VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWF 360
NK GT + + L V + + LD + V+E L+ + W
Sbjct: 93 QCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWM 152
Query: 361 KDGQE-IKTSKKVTIEKKGTIRKLLIRNISVHD-EGEYTCSLPDQETSA----------- 407
E I K+V+ G L N+ + D + +Y+C+ T
Sbjct: 153 SSSMEPITQDKRVSQGHNG---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKV 209
Query: 408 --ELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL------------VKWYKDGK 453
V E P P AS ++ L D L + WYK G
Sbjct: 210 LTTRGVAERTPSFMYP--------QGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261
Query: 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTK 513
++ + + + L I + ED+GEY C + + T++V A +
Sbjct: 262 DLPSDK---AKFENFNKALRITNVSEEDSGEYFC-LASNKMGSIRHTISVRVKAAPYWLD 317
Query: 514 LPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK 573
P NL + P E
Sbjct: 318 EPK--------------------------NLILAP----------------------GED 329
Query: 574 GTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYK 631
G RL+ + +P P++ W N +PL S+P RE+ G+ II + S Y+
Sbjct: 330 G--RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-AGDTIIFRDTQISSR---AVYQ 383
Query: 632 VVATNELGSATHGARVTV 649
+NE G A V+V
Sbjct: 384 CNTSNEHGYLLANAFVSV 401
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSSPKKREIFDGENIILELKEADS 623
++ V + I + + K +PAPS W RN++ + P+ ++++ +
Sbjct: 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR 84
Query: 624 -ETDAGDYKVVATNELGSATHGARVTVDVEK 653
E G+Y+ A N+ G+A R+ + V K
Sbjct: 85 PEEYEGEYQCFARNKFGTALSN-RIRLQVSK 114
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
E VL E+ A+V+W KDG+E+ S + ++K+ T+R+L++ + + D GEY C +
Sbjct: 29 ERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEID 88
Query: 402 DQETSAELNVVELPPEI 418
D+ S + V E P I
Sbjct: 89 DESASFTVTVTEPPVRI 105
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 425 VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
V R E+ EL + A V+W KDG+E+ S + L + ++L++ + LED+GE
Sbjct: 23 VAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGE 82
Query: 485 YSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
Y C + D+ + T+TV P V + PS
Sbjct: 83 YLCEI---DDESASFTVTVTEPPVRIIYSGPS 111
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 65 SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI-----LEP 119
S+M ++S +TI + + ++G+YT A + K V+V+ EKP + +E
Sbjct: 153 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFVAFGSGMES 208
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 179
L V T GE + + G P P+++WYK+G ++ K H LT+++ S +D G
Sbjct: 209 L--VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEVSERDTG 264
Query: 180 RYSVKVTN 187
Y+V +TN
Sbjct: 265 NYTVILTN 272
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 304
V T GE + + G P P+++WYK+G ++ K H LT+++ S +D G Y+
Sbjct: 210 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEVSERDTGNYT 267
Query: 305 VKVTN-----KEGTVESAANLNVDQ-GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVK 358
V +TN K+ V S Q G+ I +D + + V +
Sbjct: 268 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 327
Query: 359 WF 360
W+
Sbjct: 328 WY 329
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 621
+E E TV E+ +R+ AK P P I W++N PL S+ I G +L + E
Sbjct: 206 MESLVEATVGER--VRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGH--VLTIMEV 258
Query: 622 DSETDAGDYKVVATNEL 638
SE D G+Y V+ TN +
Sbjct: 259 -SERDTGNYTVILTNPI 274
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
V + + + P P++ WY NG PL E++ + + ++TI + +R+ G YTV
Sbjct: 218 VRIPAKYLGYPPPEIKWYKNGIPL-ESNHTIKAGH--------VLTIMEVSERDTGNYTV 268
Query: 90 VAKNREGEAKMDIPVKVNTGKPEK---PSILEPLHDVSITEGESAVLSVQVGGEPSP-KV 145
+ N + K V + P + S++ P+ S G + L+ V P P +
Sbjct: 269 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD--SYQYGTTQTLTCTVYAIPPPHHI 326
Query: 146 EWY 148
WY
Sbjct: 327 HWY 329
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEW--------YKDGKLI-KDRQITS----E 284
+L P H + ++ GE VL+ E + +++ ++ KL+ +D + S +
Sbjct: 97 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 156
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ----GKAEFIKKLDDLEVKE 340
K TLT+ + D+G Y+ ++ T +++ + V + ++ L + V E
Sbjct: 157 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGE 216
Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
R + + ++KW+K+G ++++ + K G + L I +S D G YT L
Sbjct: 217 RVR-IPAKYLGYPPPEIKWYKNGIPLESNHTI---KAGHV--LTIMEVSERDTGNYTVIL 270
Query: 401 PD-----QETSAELNVVELPPEI 418
+ +++ VV +PP+I
Sbjct: 271 TNPISKEKQSHVVSLVVYVPPQI 293
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEV 768
GE ++I ++ PPP+ +W NG + + +K L +EV ER+ V +
Sbjct: 215 GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAG----HVLTIMEVSERDTGNYTVIL 270
Query: 769 TS 770
T+
Sbjct: 271 TN 272
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G A FI+ + + E +E AVL+ E+ S A V+W K + ++ + ++ + GT +L
Sbjct: 7 GPARFIEDVKNQEAREGATAVLQCELNS-AAPVEWRKGSETLRDGDRYSLRQDGTKCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
IR +++ D GEY+C + TSA L V LP
Sbjct: 66 IRGLAMADTGEYSCVCGQERTSAMLTVRALP 96
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 422 LQDVK---VSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG 478
++DVK A + EL A V+W K + + + +L DG K +L I
Sbjct: 12 IEDVKNQEAREGATAVLQCELNSA-APVEWRKGSETLRDGDRYSLRQDGTKCELQIRGLA 70
Query: 479 LEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
+ D GEYSC G + + A LTV A ++F PS
Sbjct: 71 MADTGEYSCVC---GQERTSAMLTVRALPIKFTESGPS 105
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/473 (20%), Positives = 177/473 (37%), Gaps = 74/473 (15%)
Query: 45 LWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104
LW+ N + L + + S+ + +T+ ++ + + Y +N + D +
Sbjct: 143 LWWVNNQSLPVSPRLQLSNGNRT------LTLFNVTRNDTASYKCETQNPVSARRSDSVI 196
Query: 105 KVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN 164
P+ P+I PL + S GE+ LS P + W+ +G T +++
Sbjct: 197 LNVLYGPDAPTI-SPL-NTSYRSGENLNLSCHAASNPPAQYSWFVNG--------TFQQS 246
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLD 224
T L + + + G Y+ + N + + +
Sbjct: 247 TQELFIPNITVNNSGSYTCQAHNSDTGLNRTT--------------------------VT 280
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAV-LSVQVGGEPSPKVEWYKDGKLIKDRQITS 283
T+ V +P KP I ++ + E E AV L+ + + + + W + L ++
Sbjct: 281 TITV-YAEPPKPFITS--NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQL 337
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERE 342
+ TLTL+ + D G Y + N+ S LNV G + +
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
N L S+ A W DG I++ ++L I NI+ + G YTC
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGN---------IQQH--TQELFISNITEKNSGLYTCQAN 446
Query: 402 DQETSAELNVV-------ELP-PEISVPLQDVKVSRDEKA-SFEIELTKGDALVKWYKDG 452
+ + V ELP P IS + K D+ A +F E + W+ +G
Sbjct: 447 NSASGHSRTTVKTITVSAELPKPSISS--NNSKPVEDKDAVAFTCEPEAQNTTYLWWVNG 504
Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD--TGDKESKATLTV 503
+ + S + LS +G + L +F+ DA Y C + + + ++ TL V
Sbjct: 505 QSLPVSPRLQLS-NGNR-TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 37/286 (12%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 292
P+ P+I PL + S GE+ LS P + W+ +G T +++T L +
Sbjct: 203 PDAPTI-SPL-NTSYRSGENLNLSCHAASNPPAQYSWFVNG--------TFQQSTQELFI 252
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVD---QGKAEFIKKLDDLEVKERENAVLEVE 349
+ + G Y+ + N + + + + FI + V++ + L E
Sbjct: 253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCE 312
Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP-----DQE 404
W+ + Q + S ++ + R L + +++ +D G Y C + D
Sbjct: 313 PEIQNTTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHS 370
Query: 405 TSAELNVVELP--PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVT 462
LNV+ P P IS + + S + A W DG
Sbjct: 371 DPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGN--------- 420
Query: 463 LSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKA---TLTVEA 505
I Q+L I + +++G Y+C+ ++ S+ T+TV A
Sbjct: 421 --IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSA 464
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/407 (20%), Positives = 146/407 (35%), Gaps = 67/407 (16%)
Query: 1 ESSLADILEGI-PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV 59
+S + ++L G PT S + EN + L + P W+ NG Q T E+
Sbjct: 193 DSVILNVLYGPDAPTISPLNTSYRSGEN--LNLSCHAASNPPAQYSWFVNGTFQQSTQEL 250
Query: 60 VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE-GEAKMDIPVKVNTGKPEKPSILE 118
I +I G YT A N + G + + +P KP I
Sbjct: 251 F---------------IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS 295
Query: 119 PLHDVSITEGESAV-LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKD 177
++ + E E AV L+ + + + + W + L ++ + TLTL+ + D
Sbjct: 296 --NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRND 353
Query: 178 KGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPS 237
G Y + N+ L+VD L V G P+ P+
Sbjct: 354 VGPYECGIQNE---------LSVDHSDPV------------------ILNVLYG-PDDPT 385
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCST 297
I P + G + LS P + W DG + +++T L + +
Sbjct: 386 I-SPSYTY-YRPGVNLSLSCHAASNPPAQYSWLIDGNI--------QQHTQELFISNITE 435
Query: 298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEF----IKKLDDLEVKERENAVLEVEVTSD 353
K+ G Y+ + N + S + AE I + V++++ E +
Sbjct: 436 KNSGLYTCQA-NNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ 494
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
W+ +GQ + S ++ + R L + N++ +D Y C +
Sbjct: 495 NTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGI 539
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 25/187 (13%)
Query: 338 VKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYT 397
V++++ E + A W+ + Q + S ++ + R L + N++ +D Y
Sbjct: 123 VEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTRNDTASYK 180
Query: 398 CSLPD-----QETSAELNVVELP--PEISVPLQDVKVSRDEKASFEIELTKGDALVKWYK 450
C + + S LNV+ P P IS PL S + + A W+
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTIS-PLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV--GDTG-DKESKATLTVEA-P 506
+G + Q+L I + + ++G Y+C+ DTG ++ + T+TV A P
Sbjct: 240 NG-----------TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP 288
Query: 507 AVEFLTK 513
F+T
Sbjct: 289 PKPFITS 295
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 21/195 (10%)
Query: 17 KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTI 76
+K+ AE E+T R PEP + W+ NG+ ++E ++ + + + +T+
Sbjct: 9 QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN------TELTV 62
Query: 77 KSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ 136
++I + G Y A N+ GE + ++V +P I++ ++ + G+ L
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV----QPHIIQLKNETTYENGQ-VTLVCD 117
Query: 137 VGGEPSPKVEWYK--DG-------KLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
GEP P++ W + DG K + R ++ + + +L + D GRY +
Sbjct: 118 AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
Query: 187 NKEGTVESAANLNVD 201
++ G + + L+++
Sbjct: 178 SRIGGHQKSMYLDIE 192
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 46/223 (20%)
Query: 114 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTL 170
P+I P + T GE S + G P P + W+++GKLI++ + K ++T LT+
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
D G Y + TNK G E A L V
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFV---------------------------- 94
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DG-------KLIKDR-Q 280
+P I++ ++ + G+ L GEP P++ W + DG K + R +
Sbjct: 95 ----QPHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ + + +L + D GRY + ++ G + + L+++
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 236 PSILEPLHDVSIT--EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT-LTL 292
P+I P + T GE S + G P P + W+++GKLI++ + K ++T LT+
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIK----KLDDLEVKERENAVLEV 348
D G Y + TNK G E A L V F++ +L + E L
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQV------FVQPHIIQLKNETTYENGQVTLVC 116
Query: 349 --------EVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
E+T +A D F +G + ++ ++ + L I+++ + D G Y C
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDK-SLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
ER EE T + SP P+I WFRN K L ++ I G N L ++
Sbjct: 17 ERGEEMT--------FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVRNII 66
Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVE 652
+ +D G Y ATN+ G A + V V+
Sbjct: 67 N-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 416 PEISVPLQDVKVS--RDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P IS+P + + R E+ +F + + + W+++GK I EN + G +L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYILKGSNTEL 60
Query: 473 IIFSAGLEDAGEYSCRVGD-TGDKESKATLTV 503
+ + D G Y CR + G+ E +A L V
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 38/225 (16%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNT 165
G KP ++ D + G A Q GEP P++ W K GK + ++ I +
Sbjct: 3 GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 62
Query: 166 HTLTLIQC--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXL 223
++ IQ +D+ Y TN G + ++A L+V L
Sbjct: 63 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV----------------------L 100
Query: 224 DTLQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
+ Q+ +G P+I + P V + +G +A + GG P P++ W+KD L D +
Sbjct: 101 EEDQLPSG---FPTIDMGPQLKV-VEKGRTATMLCAAGGNPDPEISWFKD-FLPVDPAAS 155
Query: 283 SEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
+ + + L + D+G+Y TN GT SA ANL V
Sbjct: 156 NGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 200
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 37/182 (20%)
Query: 40 PEPDLLWYYNGEPL--QETDEVVFSDQSDMHSYVSIVTIKSIK-KREEGVYTVVAKNREG 96
P+P + W G+ + Q + + F D + S++ I+ ++ +R+E +Y A N G
Sbjct: 35 PKPRITWMKKGKKVSSQRFEVIEFDDGAG-----SVLRIQPLRVQRDEAIYECTATNSLG 89
Query: 97 EAKMDIPVKVNTGKPEKPSILE--------PLHDVS-----ITEGESAVLSVQVGGEPSP 143
E +NT K S+LE P D+ + +G +A + GG P P
Sbjct: 90 E--------INTSA--KLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDP 139
Query: 144 KVEWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANL 198
++ W+KD L D ++ + + L + D+G+Y TN GT SA ANL
Sbjct: 140 EISWFKD-FLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANL 198
Query: 199 NV 200
V
Sbjct: 199 YV 200
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNT 287
G KP ++ D + G A Q GEP P++ W K GK + ++ I +
Sbjct: 3 GSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGA 62
Query: 288 HTLTLIQC--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEV-- 338
++ IQ +D+ Y TN G + ++A L+V DQ + F I L+V
Sbjct: 63 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 339 KERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
K R +L + ++ WFKD + + K+ L I + D+G+Y C
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYEC 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 615
P+F++ E++T G + + P P I W + K + S ++ E+ DG +
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV--SSQRFEVIEFDDGAGSV 65
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L ++ + D Y+ ATN LG A+++V
Sbjct: 66 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 570 VKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
V EKG T ++ +P P I WF++ P+ + I + L++ E+ E+D G
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQI-ESSEESDQG 178
Query: 629 DYKVVATNELGS 640
Y+ VATN G+
Sbjct: 179 KYECVATNSAGT 190
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 325 GKAEFIKKLD---DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR 381
GK F K+ +++ + +A L EV + +V W+KDG+++ +S KV +E G R
Sbjct: 7 GKVVFAKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66
Query: 382 KLLIRNISVHDEGEYTCSLPDQETSAELNV 411
+L+++ + GEY+C Q+ S L V
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDA 482
++V+ A+ E+ + V WYKDGK+++ S V + G ++L++ AG +A
Sbjct: 19 REVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEA 78
Query: 483 GEYSCRVG 490
GEYSC G
Sbjct: 79 GEYSCEAG 86
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 118 EPLH-DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQC 173
+P H +V G SA LS +V + +V WYKDGK + ++ + T L + Q
Sbjct: 15 QPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQA 73
Query: 174 STKDKGRYSVKVTNKE 189
+ G YS + ++
Sbjct: 74 GQAEAGEYSCEAGGQQ 89
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 240 EPLH-DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTLIQC 295
+P H +V G SA LS +V + +V WYKDGK + ++ + T L + Q
Sbjct: 15 QPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQA 73
Query: 296 STKDKGRYSVKVTNKE 311
+ G YS + ++
Sbjct: 74 GQAEAGEYSCEAGGQQ 89
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQ 294
IL +++ EGESA S GEP P V W + G+++ Q+T+ K T +
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
D+G YSV V N EG E+ L + +
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTIQK 100
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQ 172
IL +++ EGESA S GEP P V W + G+++ Q+T+ K T +
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNV 200
D+G YSV V N EG E+ L +
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
TV E + R P P++ W R + L +S + + E+ + +D G
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEG 77
Query: 629 DYKVVATNELGSATHGARVTVDVEK 653
+Y VV N G A T+ ++K
Sbjct: 78 NYSVVVENSEGK--QEAEFTLTIQK 100
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
P P + W G+ L + Q Y S I S++ +EG Y+VV +N EG+ +
Sbjct: 36 PVPTVTWLRKGQVLSTSAR----HQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE 91
Query: 100 MDIPVKVN 107
+ + +
Sbjct: 92 AEFTLTIQ 99
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQ 294
IL +++ EGESA S GEP P V W + G+++ Q+T+ K T +
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
D+G YSV V N EG E+ L + +
Sbjct: 77 VQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQ 172
IL +++ EGESA S GEP P V W + G+++ Q+T+ K T +
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNVD 201
D+G YSV V N EG E+ L +
Sbjct: 77 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
P P + W G+ L + Q Y S I S++ +EG Y+VV +N EG+ +
Sbjct: 42 PVPTVTWLRKGQVLSTSAR----HQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE 97
Query: 100 MDIPVKVN 107
+ + +
Sbjct: 98 AEFTLTIQ 105
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
TV E + R P P++ W R + L +S + + E+ + +D G
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEG 83
Query: 629 DYKVVATNELG 639
+Y VV N G
Sbjct: 84 NYSVVVENSEG 94
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 38/221 (17%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLT 169
KP ++ D + G A Q GEP P++ W K GK + ++ I + ++
Sbjct: 6 KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 170 LIQC--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQ 227
IQ +D+ Y TN G + ++A L+V L+
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV-------------------------LE 100
Query: 228 VNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK- 285
P PSI + P V + + +A + GG P P++ W+KD L D ++ +
Sbjct: 101 EEQLPPGFPSIDMGPQLKV-VEKARTATMLCAAGGNPDPEISWFKD-FLPVDPATSNGRI 158
Query: 286 ---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
+ L + D+G+Y TN GT SA ANL V
Sbjct: 159 KQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 199
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 40 PEPDLLWYYNGEPL--QETDEVVFSDQSDMHSYVSIVTIKSIK-KREEGVYTVVAKNREG 96
P+P + W G+ + Q + + F D + S++ I+ ++ +R+E +Y A N G
Sbjct: 34 PKPRITWMKKGKKVSSQRFEVIEFDDGAG-----SVLRIQPLRVQRDEAIYECTATNSLG 88
Query: 97 E----AKMDIPVKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 151
E AK+ + ++ P PSI + P V + + +A + GG P P++ W+KD
Sbjct: 89 EINTSAKLSV-LEEEQLPPGFPSIDMGPQLKV-VEKARTATMLCAAGGNPDPEISWFKD- 145
Query: 152 KLIKDRQITSEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
L D ++ + + L + D+G+Y TN GT SA ANL V
Sbjct: 146 FLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 199
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 615
P+FI+ E++T G + + P P I W + K + S ++ E+ DG +
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV--SSQRFEVIEFDDGAGSV 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDI 664
L ++ + D Y+ ATN LG A+++V E+ P SID+
Sbjct: 65 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDM 113
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 12/176 (6%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLT 291
KP ++ D + G A Q GEP P++ W K GK + ++ I + ++
Sbjct: 6 KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 292 LIQC--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEV--KERE 342
IQ +D+ Y TN G + ++A L+V +Q F I L+V K R
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKART 125
Query: 343 NAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+L + ++ WFKD + + K+ L I + D+G+Y C
Sbjct: 126 ATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYEC 181
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
K V++ T ++ +P P I WF++ P+ + I + L++ E+ E+D
Sbjct: 118 KVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQI-ESSEESDQ 176
Query: 628 GDYKVVATNELGSATHG-ARVTVDVEKV 654
G Y+ VATN G+ A + V V +V
Sbjct: 177 GKYECVATNSAGTRYSAPANLYVRVRRV 204
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 431 EKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
E+ EL++ D WYKDG+++ SE + + +DG+K +LI+ A ++D+GE+ CR
Sbjct: 26 ERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECR 83
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 336 LEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE 395
L E VL E++ W+KDGQ+++ S+ + ++ G +L++ V D GE
Sbjct: 20 LTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGE 79
Query: 396 YTC 398
+ C
Sbjct: 80 FEC 82
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 168
KP I+ L D +++ A +V+ GEP P W KDGK I +++ +K L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + T D G Y+ V N G+V S+ L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 290
KP I+ L D +++ A +V+ GEP P W KDGK I +++ +K L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + T D G Y+ V N G+V S+ L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P+ + ++ TV + K P P+ +W ++ K + K + D LE+
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
+ D+ +D+G Y N GS + ++T+
Sbjct: 67 HKTDT-SDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELT---KGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P I LQD VS D A F ++ T + A+ W KDGK I LS D L
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAI--WTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 473 IIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
I D+G Y+C V ++ G S LT++A
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G A F + L E E A L+ E+ S A V+W K + ++ + ++++ GT +L
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
I ++SV D GEY+C + TSA L V LP +
Sbjct: 66 IHDLSVADAGEYSCMCGQERTSATLTVRALPARFT 100
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P + L+ + S A+ + EL+K A V+W K + + +L DG + +L I
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELSKV-APVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
+ DAGEYSC G + + ATLTV A F
Sbjct: 67 HDLSVADAGEYSCMC---GQERTSATLTVRALPARF 99
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 7 ILEGIPPTFSKKTKPVYAEEN--SEVTLEVRLVAVPEPDLLWYYNGEPLQETDE----VV 60
++ +PPT + V A N VTL PEP + W +GEP++ +E +
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI 248
Query: 61 FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
FSD S S +TI+++ K +E Y +A+N+ GE I +KV
Sbjct: 249 FSDDS------SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 110/295 (37%), Gaps = 55/295 (18%)
Query: 43 DLLWYY-NGE---PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG-- 96
D+ W+ NGE P Q+ VV++D S +TI + + G+Y V +G
Sbjct: 34 DISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNANIDDAGIYKCVVTAEDGTQ 88
Query: 97 -EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK--- 152
EA +++ + P+ E EGE AV+ V P + W G+
Sbjct: 89 SEATVNVKIFQKLMFKNAPTPQE------FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
Query: 153 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXX 212
L KD + N + L + D+G Y EG + + +N
Sbjct: 143 LKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC-----EGRILARGEIN------------- 183
Query: 213 XXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD 272
+QV P + + + + G+S L G P P + W KD
Sbjct: 184 ----------FKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD 233
Query: 273 GKLIKDRQITSEKNTHT-----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
G+ I++ + EK+ + LT+ D+ Y NK G +++ +L V
Sbjct: 234 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 117/303 (38%), Gaps = 74/303 (24%)
Query: 125 ITEGESAVLSVQVGGEPSPK-VEWYKDG--KLIKDRQ----ITSEKNTHTLTLIQCSTKD 177
I+ GES QV G+ K + W+ KL ++Q + ++ ++ TLT+ + D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 178 KGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPS 237
G Y VT ++GT +S A +NV + N P++
Sbjct: 74 AGIYKCVVTAEDGT-QSEATVNVKIFQK-------------------LMFKNAPTPQE-- 111
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK---LIKDRQITSEKNTHTLTLIQ 294
EGE AV+ V P + W G+ L KD + N + L +
Sbjct: 112 ---------FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRG 161
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDL--EVKERENAV------- 345
D+G Y EG + + +N I+ + ++ V+ R++ V
Sbjct: 162 IKKTDEGTYRC-----EGRILARGEINFKD-----IQVIVNVPPTVQARQSIVNATANLG 211
Query: 346 LEVEVTSDKAD------VKWFKDGQEIKT----SKKVTIEKKGTIRKLLIRNISVHDEGE 395
V + D AD + W KDG+ I+ +K + +L IRN+ +DE E
Sbjct: 212 QSVTLVCD-ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS--ELTIRNVDKNDEAE 268
Query: 396 YTC 398
Y C
Sbjct: 269 YVC 271
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 466 DGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
D L I++A ++DAG Y C V +S+AT+ V
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G A FI +L E E A L E+ S A V+W K + ++ + ++ + G + +L
Sbjct: 7 GPAHFIGRLRHQESIEGATATLRCEL-SKAAPVEWRKGRESLRDGDRHSLRQDGAVCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
I ++V D GEY+C ++ TSA L V LP
Sbjct: 66 ICGLAVADAGEYSCVCGEERTSATLTVKALP 96
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 433 ASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT 492
A+ EL+K A V+W K + + + +L DG +L I + DAGEYSC
Sbjct: 26 ATLRCELSKA-APVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVADAGEYSCVC--- 81
Query: 493 GDKESKATLTVEA 505
G++ + ATLTV+A
Sbjct: 82 GEERTSATLTVKA 94
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHS 69
PP F + + + +E ++ ++ +P PD+ WY NG +Q D +++ S++ +HS
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG-LHS 63
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ + ++ + G Y VAKNR GEA + + V
Sbjct: 64 LI----FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLT 169
P ++ ++SI EG + +V G P+P V WY +G+ ++ + I SEK H+L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
D G Y+ N+ G L+V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLT 291
P ++ ++SI EG + +V G P+P V WY +G+ ++ + I SEK H+L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
D G Y+ N+ G L+V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P FI+ E ++ E R+ KV PAP + W+ N + + S + I + + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
E +DAG Y VA N G AT ++ V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 329 FIKKLD-DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLIR 386
F KKL+ +V + L VE+ A+VKW K+GQEI+ S K E G R L I
Sbjct: 18 FQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTIS 77
Query: 387 NISVHDEGEYTCSLPDQETSAELNVVE 413
S+ D+ Y C + ++ S EL V E
Sbjct: 78 QCSLADDAAYQCVVGGEKCSTELFVKE 104
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 426 KVSRDEKASFEIELTKGDALVKWYKDGKEIAF--SENVTLSIDGKKQKLIIFSAGLEDAG 483
+VS+ K +EL DA VKW K+G+EI S+ + SI G K+ L I L D
Sbjct: 27 QVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESI-GAKRTLTISQCSLADDA 85
Query: 484 EYSCRVG 490
Y C VG
Sbjct: 86 AYQCVVG 92
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT-------HTLT 169
LEP + VS +G L+V++ + +V+W K+G+ I Q++ K TLT
Sbjct: 22 LEPAYQVS--KGHKIRLTVELA-DHDAEVKWLKNGQEI---QMSGSKYIFESIGAKRTLT 75
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVE 193
+ QCS D Y V ++ + E
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTE 99
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT-------HTLT 291
LEP + VS +G L+V++ + +V+W K+G+ I Q++ K TLT
Sbjct: 22 LEPAYQVS--KGHKIRLTVELA-DHDAEVKWLKNGQEI---QMSGSKYIFESIGAKRTLT 75
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVE 315
+ QCS D Y V ++ + E
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTE 99
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 15/178 (8%)
Query: 23 YAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR 82
YA VTLE P P + W ++ D S S S ++ I+++
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKW-------RKLDG---SQTSKWLSSEPLLHIQNVDFE 267
Query: 83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS 142
+EG Y A+N +G + ++ +P L+ + D G S G+P
Sbjct: 268 DEGTYECEAENIKGRDTYQGRIIIHA----QPDWLDVITDTEADIGSDLRWSCVASGKPR 323
Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
P V W +DG+ + Q E + L + +D G Y NK GTV ++A L V
Sbjct: 324 PAVRWLRDGQPLAS-QNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 69/201 (34%), Gaps = 36/201 (17%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
D G+ L G P P+++W K + ++SE H + +D+G Y
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV---DFEDEGTY 272
Query: 182 SVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEP 241
+ N +G DT Q +P L+
Sbjct: 273 ECEAENIKGR--------------------------------DTYQGRIIIHAQPDWLDV 300
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 301
+ D G S G+P P V W +DG+ + Q E + L + +D G
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS-QNRIEVSGGELRFSKLVLEDSG 359
Query: 302 RYSVKVTNKEGTVESAANLNV 322
Y NK GTV ++A L V
Sbjct: 360 MYQCVAENKHGTVYASAELTV 380
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 79/404 (19%), Positives = 139/404 (34%), Gaps = 60/404 (14%)
Query: 24 AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
AEE +VTL R A P W NG L+ + + + +V +K ++
Sbjct: 21 AEE--KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-----DLVISNPVKAKD 73
Query: 84 EGVYTVVAKNREG-----EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG 138
G Y VA N G EA + E+ +P V ITEG + +
Sbjct: 74 AGSYQCVATNARGTVVSREASLRFGFLQEFSAEER----DP---VKITEGWGVMFTCSPP 126
Query: 139 GE-PSPKVEW----YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE 193
P+ W + + R+ S+ T L + + D G YS T+
Sbjct: 127 PHYPALSYRWLLNEFPNFIPADGRRFVSQ-TTGNLYIAKTEASDLGNYSCFATS------ 179
Query: 194 SAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGES 252
++D +L + PSI D G+
Sbjct: 180 -----HIDFITKSVFSKFSQL----------SLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 253 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 312
L G P P+++W K + ++SE H + +D+G Y + N +G
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV---DFEDEGTYECEAENIKG 281
Query: 313 TVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
+ + + +++ + D E + + + V+W +DGQ + + +
Sbjct: 282 RDTYQGRI-IIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340
Query: 372 VTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQE----TSAELNV 411
+ + +L + + D G Y C ++ SAEL V
Sbjct: 341 IEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDYK 631
+R P P++ W R+ +P L+S + E+ GE ++LE D+G Y+
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQP-LASQNRIEVSGGELRFSKLVLE--------DSGMYQ 362
Query: 632 VVATNELGSATHGARVTV 649
VA N+ G+ A +TV
Sbjct: 363 CVAENKHGTVYASAELTV 380
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 21/157 (13%)
Query: 357 VKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---SLPDQETSAELNVV 412
+KW K DG + TSK ++ E L I+N+ DEG Y C ++ ++T ++
Sbjct: 239 IKWRKLDGSQ--TSKWLSSEPL-----LHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 291
Query: 413 ELPPEISVPLQDVK--VSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLS-IDGKK 469
P+ + D + + D + S + K V+W +DG+ +A + +S + +
Sbjct: 292 HAQPDWLDVITDTEADIGSDLRWSC-VASGKPRPAVRWLRDGQPLASQNRIEVSGGELRF 350
Query: 470 QKLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEA 505
KL+ LED+G Y C + G + A LTV+A
Sbjct: 351 SKLV-----LEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 558 APLFIER-----FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDG 611
P+F E+ F E + +EK + L + +A+P + W N L P R + G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEK--VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 612 ENIILELKEADSETDAGDYKVVATNELGS 640
+ +I +A DAG Y+ VATN G+
Sbjct: 62 DLVISNPVKAK---DAGSYQCVATNARGT 87
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENI 614
+AP+FI + + K V E +++L ++ A P P + W RNN+ + + + ++ + +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L +K+ + + DAG Y V A NE G T R+ V
Sbjct: 74 TLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDMHSYV 71
P F K + E V LE ++ A+P P L W N E +Q TD + S D V
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRI--SLYQDNTGRV 73
Query: 72 SIVTIKSIKKREEGVYTVVAKNREG----EAKMDIPVKVNTGKP 111
+++ IK + K++ G YTV A N G ++D+ + N P
Sbjct: 74 TLL-IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 125 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLI--QCSTKDKG 179
+ EG+S L Q+ P PK+ W ++ ++++ DR + NT +TL+ + KD G
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 180 RYSVKVTNKEGTVESAANLNV 200
Y+V N+ G L+V
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDV 107
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLI--QCSTKDKG 301
+ EG+S L Q+ P PK+ W ++ ++++ DR + NT +TL+ + KD G
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 302 RYSVKVTNKEGTVESAANLNV 322
Y+V N+ G L+V
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDV 107
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
+FI+ L + E E + A L E+ S A V+W K + ++ + ++ + G+ +L IR
Sbjct: 10 KFIEGLRNEEATEGDTATLWCEL-SKAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIRG 68
Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELP 415
++V D GEY+C + TSA L V LP
Sbjct: 69 LAVVDAGEYSCVCGQERTSATLTVRALP 96
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 422 LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLED 481
L++ + + + A+ EL+K A V+W K + + + +L DG + +L I + D
Sbjct: 15 LRNEEATEGDTATLWCELSKA-APVEWRKGHETLRDGDRHSLRQDGSRCELQIRGLAVVD 73
Query: 482 AGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
AGEYSC G + + ATLTV A F+ PS
Sbjct: 74 AGEYSCVC---GQERTSATLTVRALPARFIESGPS 105
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 331 KKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEI----KTSKKVTIEKKGTIRKLLIR 386
K+L+D E LE EV+ D A+VKWFK+G+EI K+ ++ +E K I L+I
Sbjct: 12 KQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIE 69
Query: 387 NISVHDEGEYTCSLPDQETSAELNV 411
+ D EY+ ++SA+L+V
Sbjct: 70 GATKADAAEYSVMTTGGQSSAKLSV 94
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 422 LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI--AFSENVTLSIDGKKQKLIIFSAGL 479
L+D E+ E E+++ DA VKW+K+G+EI + ++GKK LII A
Sbjct: 14 LEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 480 EDAGEYSCRVGDTGDKESKATLTVE 504
DA EYS V TG +S A L+V+
Sbjct: 74 ADAAEYS--VMTTGG-QSSAKLSVD 95
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 749 KKLDDLEVKERENAVLEVEVTSDKADVKWFKNN 781
K+L+D E LE EV+ D A+VKWFKN
Sbjct: 12 KQLEDTTAYCGERVELECEVSEDDANVKWFKNG 44
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 553 GSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-- 609
GS G + + + + E T G + L +V A ++ WF+N + ++ PK R
Sbjct: 1 GSSGSSGIMVTKQLEDTTAYCGERVELECEVSEDDA-NVKWFKNGEEIIPGPKSRYRIRV 59
Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+G+ IL + E ++ DA +Y V+ T S A+++VD+
Sbjct: 60 EGKKHIL-IIEGATKADAAEYSVMTTGGQSS----AKLSVDL 96
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 38/299 (12%)
Query: 41 EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM 100
E ++WY ++ E+ ++ D + + I K++ G+Y V+ K+ G+ K
Sbjct: 36 ETHIVWY------KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 89
Query: 101 DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP---------KVEWYKDG 151
+ + + K ++E ++++ + + S G + KV W +G
Sbjct: 90 RLKL---VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG 146
Query: 152 KLIK--DRQITSEKNTHTLTLIQCST-KDKGRYSVKVTNKEGTVESAANLNVDXXXXXXX 208
I+ DR T I T DKG+Y +++ + + + +L+
Sbjct: 147 SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYA 206
Query: 209 XXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDV-SITEGESAVLSVQVGGEPSPKV 267
Q + + +L L DV +I EG++ L+ V G+P P+V
Sbjct: 207 EFQRLK------------QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV 254
Query: 268 EWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
W K+ K + + K T T+ ST D G+Y + V NK G+ S ++V
Sbjct: 255 SWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 126/342 (36%), Gaps = 57/342 (16%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
F++ L EV N +L+ +V + K + + W+KD +EI +K K I LLI
Sbjct: 9 HFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLI 65
Query: 386 RNISVHDEGEYTCSLPDQ------------ETSAELNVVELPPEISVPLQDVKVSRDEKA 433
S D G Y L D E EL ++E+ +I++ D+K+ +
Sbjct: 66 TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKEL-MMEVCKKIALSATDLKIQSTAEG 124
Query: 434 ----SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
SF + D V W +G I +S+ V + G++ L I D G+Y +
Sbjct: 125 IQLYSF-VTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 490 --GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIV 547
G TG +++ V+LS + +
Sbjct: 184 FDGKTGHQKT--------------------------------VDLSGQAYDEAYAEFQRL 211
Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 607
+ +A + + T++E + L V P P + W +N K L S
Sbjct: 212 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL 271
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
F+ S D+G Y +V N+ GS T V+V
Sbjct: 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 40/277 (14%)
Query: 269 WYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA 327
WYKD + I D + + TL + + S KD G Y V + + G +S L VD+
Sbjct: 41 WYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL-VDEAFK 99
Query: 328 EFIKKL--------DDLEVKERENAV-LEVEVTSDKADVK--WFKDGQEIKTSKKVTIEK 376
E + ++ DL+++ + L VT D+K W +G I+ S +V
Sbjct: 100 ELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV 159
Query: 377 KGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV---VELPPEISVPLQDVK---VSRD 430
G L I + +D+G+Y L D +T + V + E Q +K ++
Sbjct: 160 TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 219
Query: 431 EKASF------EIELTKGDAL-------------VKWYKDGKEIAFSENVTLSID-GKKQ 470
+A + + +G AL V W K+ K +A ++ L + G+
Sbjct: 220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279
Query: 471 KLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAP 506
I D+G+Y V + G + S T++V P
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
E + A +L G+P V +E + L + P P++ W N + L D
Sbjct: 218 EKNRARVLGGLPDV-------VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270
Query: 61 FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
++ +Y TI + + G Y +V KN+ G D V V
Sbjct: 271 LKFEAGRTAYF---TINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
E +L EV + A V+W+KDGQE++ S V +E +G R+L++ D GE+ C
Sbjct: 22 ECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG 81
Query: 402 DQ 403
D+
Sbjct: 82 DE 83
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 414 LPPEISVPLQDVKVS--RDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
+P I P + V V E E+ + DA V+WYKDG+E+ S+ V L +G ++
Sbjct: 3 MPVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFVVLENEGPHRR 62
Query: 472 LIIFSAGLEDAGEYSCRVGD 491
L++ + D GE+ C GD
Sbjct: 63 LVLPATQPSDGGEFQCVAGD 82
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIE 375
++A L V +F + L + E E AVL E+ S A V+W+K + ++ + ++
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLRDGDRHSLR 67
Query: 376 KKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELP 415
+ G +L IR + D GEY C + TSA L V +P
Sbjct: 68 QDGARCELQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMP 107
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLS 464
TSA L V LP + + L++ + + A EL+K A V+W+K + + + +L
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM-APVEWWKGHETLRDGDRHSLR 67
Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
DG + +L I EDAGEY C G + + A LTV A
Sbjct: 68 QDGARCELQIRGLVAEDAGEYLCMC---GKERTSAMLTVRA 105
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
PP F++ + + P P ++W G+ + Q + + F D S
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG--- 62
Query: 70 YVSIVTIKSIKK-REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS---- 124
S++ I+ ++ R+E +Y VA N GE + + ++ + ++ P D+
Sbjct: 63 --SVLRIQPLRTPRDEAIYECVASNNVGE--ISVSTRLTVLREDQIPRGFPTIDMGPQLK 118
Query: 125 -ITEGESAVLSVQVGGEPSPKVEWYKD----------GKLIKDRQITSEKNTHTLTLIQC 173
+ +A + G P P++ W+KD G++ +Q+ SE + L + Q
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI---KQLRSE-SIGALQIEQS 174
Query: 174 STKDKGRYSVKVTNKEGTVESA-ANLNV 200
D+G+Y TN GT SA ANL V
Sbjct: 175 EESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 46/220 (20%)
Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQC-- 173
P+ ++ G ++ + Q G+P PK+ W K GK + +++ I + + ++ IQ
Sbjct: 13 PVDQTGVSGGVASFI-CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKP 233
+ +D+ Y +N G + + L V L Q+ G P
Sbjct: 72 TPRDEAIYECVASNNVGEISVSTRLTV----------------------LREDQIPRGFP 109
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD----------GKLIKDRQITS 283
+ P V + +A + G P P++ W+KD G++ +Q+ S
Sbjct: 110 TID--MGPQLKV-VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI---KQLRS 163
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
E + L + Q D+G+Y TN GT SA ANL V
Sbjct: 164 E-SIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQC-- 295
P+ ++ G ++ + Q G+P PK+ W K GK + +++ I + + ++ IQ
Sbjct: 13 PVDQTGVSGGVASFI-CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEVKERENAVLEVEV 350
+ +D+ Y +N G + + L V DQ F I L+V ER +
Sbjct: 72 TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA 131
Query: 351 TSDKAD--VKWFKDGQEIKTSK---KVTIEKKGTIRKLLIRNISVHDEGEYTC 398
S D + WFKD + TS ++ + +I L I D+G+Y C
Sbjct: 132 ASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGENIILELKEADSET 625
K V+ T ++ +P P I WF++ P+ +S I E+I E E+
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 626 DAGDYKVVATNELGS 640
D G Y+ VATN G+
Sbjct: 178 DQGKYECVATNSAGT 192
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 615
P F ++T G + + P P IVW + K + S ++ E+ DG +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV--SNQRFEVIEFDDGSGSV 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L ++ + D Y+ VA+N +G + R+TV
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTHTL 168
+P L+ D+++ EG+ + +V G P+P + W DGK ++ + + E H+L
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 169 TLIQCSTKDKGRYSVKVTNKEG 190
+ +++D G Y+ TN+ G
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAG 90
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTHTL 290
+P L+ D+++ EG+ + +V G P+P + W DGK ++ + + E H+L
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 291 TLIQCSTKDKGRYSVKVTNKEG 312
+ +++D G Y+ TN+ G
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAG 90
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDMH 68
G P F + + +E ++ ++ +P PDL W +G+P++ ++ + ++ +H
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
S + I+ + R+ G+YT +A NR G+ + + V K PS
Sbjct: 67 SLI----IEPVTSRDAGIYTCIATNRAGQNSFSLELVV-AAKESGPS 108
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
GS G P F++ + TV+E R+ KV P P + W + KP+ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
+ + E + DAG Y +ATN G + + V ++ G
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIK--TSKKVTIEKKGTIRK 382
+ F++ DL V+E + ++ +V+ D+ W DG+ ++ ++ K+ + + G +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG-VHS 67
Query: 383 LLIRNISVHDEGEYTC 398
L+I ++ D G YTC
Sbjct: 68 LIIEPVTSRDAGIYTC 83
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 36/195 (18%)
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
G+ L G P P+++W K + + T+E TL + S +D+G Y + N
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEP---TLQIPSVSFEDEGTYECEAEN 277
Query: 188 KEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSI 247
+G DT+Q +P L+ + D
Sbjct: 278 SKGR--------------------------------DTVQGRIIVQAQPEWLKVISDTEA 305
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
G + G+P P V W ++G+ + Q E L + S +D G Y
Sbjct: 306 DIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS-QNRVEVLAGDLRFSKLSLEDSGMYQCVA 364
Query: 308 TNKEGTVESAANLNV 322
NK GT+ ++A L V
Sbjct: 365 ENKHGTIYASAELAV 379
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 15/178 (8%)
Query: 23 YAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR 82
YA +VTLE P P + W +V S + + I S+
Sbjct: 217 YALVGQQVTLECFAFGNPVPRIKW----------RKVDGSLSPQWTTAEPTLQIPSVSFE 266
Query: 83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS 142
+EG Y A+N +G + + V +P L+ + D G + G+P
Sbjct: 267 DEGTYECEAENSKGRDTVQGRIIVQA----QPEWLKVISDTEADIGSNLRWGCAAAGKPR 322
Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
P V W ++G+ + Q E L + S +D G Y NK GT+ ++A L V
Sbjct: 323 PTVRWLRNGEPLAS-QNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635
+R P P++ W RN +P L+S + E+ G+ +L S D+G Y+ VA
Sbjct: 311 LRWGCAAAGKPRPTVRWLRNGEP-LASQNRVEVLAGDLRFSKL----SLEDSGMYQCVAE 365
Query: 636 NELGSATHGARVTVDV 651
N+ G+ A + V
Sbjct: 366 NKHGTIYASAELAVQA 381
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE 624
F E++ +E+ + L + +ASP + W N + P R G N++ +
Sbjct: 15 FPEESTEEQ--VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLV--IMNPTKA 70
Query: 625 TDAGDYKVVATNELGS 640
DAG Y+ +A+N +G+
Sbjct: 71 QDAGVYQCLASNPVGT 86
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
L I ++S DEG Y C + E S + V+ + + +KV D +A L G
Sbjct: 258 LQIPSVSFEDEGTYEC---EAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWG 314
Query: 443 DAL-------VKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVGD-TG 493
A V+W ++G+ +A V L+ D + KL LED+G Y C + G
Sbjct: 315 CAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKL-----SLEDSGMYQCVAENKHG 369
Query: 494 DKESKATLTVEA 505
+ A L V+A
Sbjct: 370 TIYASAELAVQA 381
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 327 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
A F + L + E E A L+ E+ S A V+W K + ++ K ++ + G + +L I
Sbjct: 8 ARFTEGLRNEEAMEGATATLQCEL-SKAAPVEWRKGLEALRDGDKYSLRQDGAVCELQIH 66
Query: 387 NISVHDEGEYTCSLPDQETSAELNVVELP 415
+++ D G Y+C + TSA L V LP
Sbjct: 67 GLAMADNGVYSCVCGQERTSATLTVRALP 95
Score = 36.2 bits (82), Expect = 0.071, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 433 ASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT 492
A+ + EL+K A V+W K + + + +L DG +L I + D G YSC
Sbjct: 25 ATLQCELSKA-APVEWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVYSCVC--- 80
Query: 493 GDKESKATLTVEAPAVEFL 511
G + + ATLTV A F+
Sbjct: 81 GQERTSATLTVRALPARFI 99
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 168
KP + + D+ + EG +A +V G P P+V W+KD +K+ QI E+ +L
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
T+ + D +Y+ K N G A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 290
KP + + D+ + EG +A +V G P P+V W+KD +K+ QI E+ +L
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
T+ + D +Y+ K N G A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-N 613
P P F + + V E R KV+ P P ++WF+++ P+ S + +D E N
Sbjct: 38 PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
L + E + DA Y A N LG AT A + V+
Sbjct: 98 CSLTISEVCGDDDA-KYTCKAVNSLGEATCTAELLVE 133
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P F+K + E S + ++ P+P+++W+ + P++E+ F D
Sbjct: 40 VKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH--FQIDYDEEGN 97
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
S+ TI + ++ YT A N GEA + V T
Sbjct: 98 CSL-TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTI--EKKGTIRK 382
K F K + D++V E A + +V +V WFKD +K S+ I +++G
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC-S 99
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNV 411
L I + D+ +YTC SL + +AEL V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 34 AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 93
Query: 315 ESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVEVTSD 353
+L+V + G EF+ K+ + + + VE
Sbjct: 94 NHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGS 152
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAEL 409
K + +K + T +K+ I L IRN++ D GEYTC S+ SA L
Sbjct: 153 KYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 210
Query: 410 NVVELP 415
V+ P
Sbjct: 211 TVLPAP 216
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 31/181 (17%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + L++ ++ D+G YTC + ++ S L+V
Sbjct: 42 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 101
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK-----------DGKEI 455
VE P + + + ++E + ++W K DG
Sbjct: 102 VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY 161
Query: 456 -----AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV-EAPAV 508
A N T D + + L I + EDAGEY+C G++ G A LTV AP
Sbjct: 162 LKVLKAAGVNTT---DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGR 218
Query: 509 E 509
E
Sbjct: 219 E 219
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 7 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 59
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 60 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 101
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 5 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 60
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 61 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPI 110
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 74/218 (33%), Gaps = 61/218 (27%)
Query: 446 VKWYKDGKEIAFSENVT-LSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
++W K+GKE + + + LI+ S D G Y+C V + E
Sbjct: 42 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN------------E 89
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
++ L V PH P +Q G P A +
Sbjct: 90 YGSINHTYHLDVVERSPH-----------RPILQA-------------GLPANASTVV-- 123
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDG 611
G + + KV + P I W ++ P L K + D
Sbjct: 124 --------GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 175
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E +L ++ E DAG+Y +A N +G + H A +TV
Sbjct: 176 EIEVLYIRNVTFE-DAGEYTCLAGNSIGISFHSAWLTV 212
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 35 AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 94
Query: 315 ESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVEVTSD 353
+L+V + G EF+ K+ + + + VE
Sbjct: 95 NHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGS 153
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAEL 409
K + +K + T +K+ I L IRN++ D GEYTC S+ SA L
Sbjct: 154 KYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 211
Query: 410 NVVELP 415
V+ P
Sbjct: 212 TVLPAP 217
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 31/181 (17%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + L++ ++ D+G YTC + ++ S L+V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK-----------DGKEI 455
VE P + + + ++E + ++W K DG
Sbjct: 103 VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY 162
Query: 456 -----AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV-EAPAV 508
A N T D + + L I + EDAGEY+C G++ G A LTV AP
Sbjct: 163 LKVLKAAGVNTT---DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGR 219
Query: 509 E 509
E
Sbjct: 220 E 220
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 8 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 61 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 6 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 61
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPI 111
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 74/218 (33%), Gaps = 61/218 (27%)
Query: 446 VKWYKDGKEIAFSENVT-LSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
++W K+GKE + + + LI+ S D G Y+C V + E
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN------------E 90
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
++ L V PH P +Q G P A +
Sbjct: 91 YGSINHTYHLDVVERSPH-----------RPILQA-------------GLPANASTVV-- 124
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDG 611
G + + KV + P I W ++ P L K + D
Sbjct: 125 --------GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E +L ++ E DAG+Y +A N +G + H A +TV
Sbjct: 177 EIEVLYIRNVTFE-DAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 255 LSVQVGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNK 310
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 311 EGTVESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVE 349
G++ +L+V + G EF+ K+ + + + VE
Sbjct: 91 YGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVE 149
Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQET 405
K + +K + T +K+ I L IRN++ D GEYTC S+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFH 207
Query: 406 SAELNVVELP 415
SA L V+ P
Sbjct: 208 SAWLTVLPAP 217
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 31/181 (17%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + L++ ++ D+G YTC + ++ S L+V
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK-----------DGKEI 455
VE P + + + ++E + ++W K DG
Sbjct: 103 VERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY 162
Query: 456 -----AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV-EAPAV 508
A N T D + + L I + EDAGEY+C G++ G A LTV AP
Sbjct: 163 LKVLKAAGVNTT---DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGR 219
Query: 509 E 509
E
Sbjct: 220 E 220
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 8 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 61 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 6 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 61
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERWPHRPI 111
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 74/218 (33%), Gaps = 61/218 (27%)
Query: 446 VKWYKDGKEIAFSENVT-LSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
++W K+GKE + + + LI+ S D G Y+C V + E
Sbjct: 43 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN------------E 90
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
++ L V PH P +Q G P A +
Sbjct: 91 YGSINHTYHLDVVERWPH-----------RPILQA-------------GLPANASTVV-- 124
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDG 611
G + + KV + P I W ++ P L K + D
Sbjct: 125 --------GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 176
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E +L ++ E DAG+Y +A N +G + H A +TV
Sbjct: 177 EIEVLYIRNVTFE-DAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 168
KP + + D+ + EG +A +V G P P+V W+KD +K+ QI E+ +L
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
T+ + D +Y+ K N G A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QI-TSEKNTHTL 290
KP + + D+ + EG +A +V G P P+V W+KD +K+ QI E+ +L
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
T+ + D +Y+ K N G A L V+
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-N 613
P P F + + V E R KV+ P P ++WF+++ P+ S + +D E N
Sbjct: 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
L + E + DA Y A N LG AT A + V+
Sbjct: 98 CSLTISEVCGDDDA-KYTCKAVNSLGEATCTAELLVE 133
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P F+K + E S + ++ P+P+++W+ + P++E+ F D
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH--FQIDYDEEGN 97
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
S+ TI + ++ YT A N GEA + V T
Sbjct: 98 CSL-TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTI--EKKGTIRK 382
K F K + D+EV E A + +V +V WFKD +K S+ I +++G
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC-S 99
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNV 411
L I + D+ +YTC SL + +AEL V
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 166
++G PS L D ++ EG+ VL V G P P++ W +G+ I+ + T E
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA 64
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L + +D G Y+ N G V +A + V
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
++G PS L D ++ EG+ VL V G P P++ W +G+ I+ + T E
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVA 64
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + +D G Y+ N G V +A + V
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 553 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G AP F ++ V E L V+ +P P I W N +P+ + E
Sbjct: 4 GSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGV 63
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E L +++A E D G Y +A N LG + A VTV
Sbjct: 64 AE---LHIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P+FS K E + L+ + P P + W NG+P+Q + +++H
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH-- 67
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
I+ + G YT +A+N G+ V V+
Sbjct: 68 -----IQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 64/176 (36%), Gaps = 13/176 (7%)
Query: 25 EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE 84
E S +L + P P WY E VV +D+ S + IK +
Sbjct: 228 ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVS--GTLIIKDAVVEDS 285
Query: 85 GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 144
G Y V N G ++ + V P I P V G AV + Q G P
Sbjct: 286 GKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPAVFTCQYTGNPIKT 341
Query: 145 VEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
V W KDGK I + L + +DKG Y V N + E++A L +
Sbjct: 342 VSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ H LT + KGR + +T G+V N Q K +FI D+E+ +
Sbjct: 185 RTKHRLTGETRLSATKGR--LVITEPVGSVRPKVN---PQDKHQFI----DVELAS-SYS 234
Query: 345 VLEVEVTSDKADVKWFK--DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---- 398
+L + + +W+K +G K + + K L+I++ V D G+Y C
Sbjct: 235 LLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 399 SLPDQETSAELNVVE-LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEI 455
S+ + L V L +I P Q V R A F + T G+ + V W KDGK I
Sbjct: 295 SVGGESVETVLTVTAPLSAKIDPPTQTVDFGR--PAVFTCQYT-GNPIKTVSWMKDGKAI 351
Query: 456 AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
SE+V L I+ K+ ED G Y C V + D+ES
Sbjct: 352 GHSESV-LRIESVKK---------EDKGMYQCFVRN--DRES 381
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 71/208 (34%), Gaps = 50/208 (24%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLIKDRQITSEKN---THTLTLIQCSTK 176
DV + S + Q P+P WYK +G K + +++ + TL + +
Sbjct: 226 DVELASSYSLLCMAQ--SYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 283
Query: 177 DKGRYSVKVTNKEG--TVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPE 234
D G+Y V N G +VE+ + P
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTVTA--------------------------------PL 311
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
I P V G AV + Q G P V W KDGK I + L +
Sbjct: 312 SAKIDPPTQTVDF--GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIES 362
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
+DKG Y V N + E++A L +
Sbjct: 363 VKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 23/173 (13%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLIKDRQITSEKN---THTLTLIQCSTK 298
DV + S + Q P+P WYK +G K + +++ + TL + +
Sbjct: 226 DVELASSYSLLCMAQ--SYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 283
Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD--DLEVKERENAVLEVEVTSDKA- 355
D G+Y V N G L V A K+D V AV + T +
Sbjct: 284 DSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 340
Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE 408
V W KDG+ I S+ V L I ++ D+G Y C + + SAE
Sbjct: 341 TVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAE 383
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 45/307 (14%)
Query: 240 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD----RQITSEKNTHTLTLIQ 294
EP + + + A + + G P P++ W + DG + D RQI+S+ L
Sbjct: 9 EPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LVFPP 65
Query: 295 CSTKDKGR------YSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAV-LE 347
+D + Y+ N+ G++ S +++V + + D E R N+V ++
Sbjct: 66 FRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRAVVIQSYESEADNEYVIRGNSVVMK 124
Query: 348 VEVTSDKADV----KWF-KDGQEIKTSKKVTIEKKGTI---RKLLIRNISVHD-EGEYTC 398
E+ S AD W +G+ + + K + +L IR + D Y C
Sbjct: 125 CEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQC 184
Query: 399 SLPDQETS-AELNVVELPPEISVPLQDV--KVSRDEKASF-EIELTKGDALV-------- 446
+ T L+ + I+ P+ V KV+ +K F ++EL +L+
Sbjct: 185 RTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPT 244
Query: 447 ---KWYKDGKEIAFSENVTLSIDGKKQ---KLIIFSAGLEDAGEYSCRVGDTGDKESKAT 500
+WYK + + V L+ D KQ LII A +ED+G+Y C V ++ ES T
Sbjct: 245 PSFRWYKFIEGTTRKQAVVLN-DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 303
Query: 501 -LTVEAP 506
LTV AP
Sbjct: 304 VLTVTAP 310
>pdb|2RQ8|A Chain A, Solution Nmr Structure Of Titin I27 Domain Mutant
Length = 98
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
E+ PL V+V E A FEIEL++ D +W G+ +A S + + DGKK LI+ +
Sbjct: 4 EVEKPLPGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHN 63
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
L GE S + +T +S A L V
Sbjct: 64 CQLGMTGEVSFQAANT---KSAANLKV 87
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 7 ILEGIPPTFSKKTKPVYAEEN--SEVTLEVRLVAVPEPDLLWYYNGEPL-QETDEVVFSD 63
++ +PP+ + + A N VTL PEP + W +GEP+ QE +E +S
Sbjct: 6 VIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSF 65
Query: 64 QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
D + IK + K +E Y +A+N+ GE I +KV
Sbjct: 66 NYDGSELI----IKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 68/189 (35%), Gaps = 13/189 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P T + KP+ ++L P P WY E VV +D+ S
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS-- 269
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ IK + G Y V N G ++ + V P I P V G A
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPA 325
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
V + Q G P V W KDGK I + L + +DKG Y V N +
Sbjct: 326 VFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRES 378
Query: 192 VESAANLNV 200
E++A L +
Sbjct: 379 AEASAELKL 387
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 358 KWFK--DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
+W+K +G K + + K L+I++ V D G+Y C S+ + L V
Sbjct: 245 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Query: 412 VE-LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGK 468
L +I P Q V R A F + T G+ + V W KDGK I SE+V L I+
Sbjct: 305 TAPLSAKIDPPTQTVDFGR--PAVFTCQYT-GNPIKTVSWMKDGKAIGHSESV-LRIESV 360
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
K+ ED G Y C V + D+ES
Sbjct: 361 KK---------EDKGMYQCFVRN--DRES 378
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 23/189 (12%)
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLIKDRQITSEK 285
+++ P P++++ ++ + S + Q G P+P WYK +G K + +++
Sbjct: 207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYKFIEGTTRKQAVVLNDR 264
Query: 286 N---THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD--DLEVKE 340
+ TL + +D G+Y V N G L V A K+D V
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDF 321
Query: 341 RENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
AV + T + V W KDG+ I S+ V L I ++ D+G Y C
Sbjct: 322 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCF 371
Query: 400 LPDQETSAE 408
+ + SAE
Sbjct: 372 VRNDRESAE 380
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 50/233 (21%)
Query: 97 EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLI 154
+ ++ I +++ P P++++ ++ + S + Q G P+P WYK +G
Sbjct: 198 KGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYKFIEGTTR 255
Query: 155 KDRQITSEKN---THTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNVDXXXXXXXX 209
K + +++ + TL + +D G+Y V N G +VE+ +
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--------- 306
Query: 210 XXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 269
P I P V G AV + Q G P V W
Sbjct: 307 -----------------------PLSAKIDPPTQTVDF--GRPAVFTCQYTGNPIKTVSW 341
Query: 270 YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
KDGK I + L + +DKG Y V N + E++A L +
Sbjct: 342 MKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETDAGD 629
TI L+ + PAPS W+ K + + +K+ + + + L +K+A E D+G
Sbjct: 229 TISLLCPAQGFPAPSFRWY---KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE-DSGK 284
Query: 630 YKVVATNELGSATHGARVTVDVEKVGR--PPINSIDIDRNHVHHLDNIDSP 678
Y V N +G + +TV + PP ++D R V +P
Sbjct: 285 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP 335
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 125/312 (40%), Gaps = 58/312 (18%)
Query: 240 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD----RQITSEKNTHTLTLIQ 294
EP + + + A + + G P P++ W + DG + D RQI+S+ L
Sbjct: 9 EPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LVFPP 65
Query: 295 CSTKDKGR------YSVKVTNKEGTVESAANLNVDQGKAEFIKK-LDDLEVKERENAVLE 347
+D + Y+ N+ G++ S +++V A++ + ++ V +AV++
Sbjct: 66 FRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRAVVAQYYEADVNKEHVIRGNSAVIK 124
Query: 348 VEVTSDKAD----VKWFKDGQE-----IKTSKKVTIEKKGTIRKLLIRNISVHD-EGEYT 397
+ S AD V W D +E + K + G +L IR + D Y
Sbjct: 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQ 181
Query: 398 CSLPDQ--------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALV--- 446
C + T L + E P S P V + E+ + +L+
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITE-PISSSAPRTPALVQK----PLELMVAHTISLLCPA 236
Query: 447 --------KWYKDGKEIAFSENVTLSIDGKKQ---KLIIFSAGLEDAGEYSCRVGDTGDK 495
+WYK + + V L+ D KQ LII A +ED+G+Y C V ++
Sbjct: 237 QGFPAPSFRWYKFIEGTTRKQAVVLN-DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295
Query: 496 ESKAT-LTVEAP 506
ES T LTV AP
Sbjct: 296 ESVETVLTVTAP 307
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 38/189 (20%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 35 AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 94
Query: 315 ESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV--------EVTSD-KADVKWFK---- 361
+L+V E + L+ NA V +V SD + ++W K
Sbjct: 95 NHTYHLDV----VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 150
Query: 362 -------DG----QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETS 406
DG + +K + T +K+ I L IRN++ D GEYTC S+ S
Sbjct: 151 NGSKYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHS 208
Query: 407 AELNVVELP 415
A L V+ P
Sbjct: 209 AWLTVLPAP 217
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 8 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 60
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 61 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 6 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 61
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 62 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSRHRPI 111
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 574 GTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENIILELKE 620
G + + KV + P I W ++ P L K + D E +L ++
Sbjct: 126 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 621 ADSETDAGDYKVVATNELGSATHGARVTV 649
E DAG+Y +A N +G + H A +TV
Sbjct: 186 VTFE-DAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 261 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 316
G P+P + W K+GK K D +I K + T ++I S DKG Y+ V N+ G++
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 317 AANLNV-DQGKAEFIKKLD---DLEVKERENAVLEVEVTSD-KADVKWFK----DGQEI- 366
L+V ++ I + + V N +V SD + ++W K +G +I
Sbjct: 102 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG 161
Query: 367 ----------KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
KT+ T +K+ + L +RN+S D GEYTC S+ SA L V+
Sbjct: 162 PDNLPYVQILKTAGVNTTDKE--MEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Query: 413 E 413
E
Sbjct: 220 E 220
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENI 614
KTV + M KV + P P I W ++ N P + K + D E
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+L L+ E DAG+Y +A N +G + H A +TV
Sbjct: 185 VLHLRNVSFE-DAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + +++ ++ D+G YTC + ++ S +L+V
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIAFSENVT 462
VE P + + ++ +E + ++W K +G +I
Sbjct: 108 VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPY 167
Query: 463 LSI---------DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
+ I D + + L + + EDAGEY+C G++ G A LTV
Sbjct: 168 VQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 49/205 (23%)
Query: 139 GEPSPKVEWYKDGKLIK-DRQITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 194
G P+P + W K+GK K D +I K T ++ + DKG Y+ V N+ G++
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 195 AANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGESA 253
L+V P +P + L + ++ G +
Sbjct: 102 TYQLDVVER----------------------------SPHRPILQAGLPANKTVALGSNV 133
Query: 254 VLSVQVGGEPSPKVEWYK----DGKLIKDRQI------------TSEKNTHTLTLIQCST 297
+V +P P ++W K +G I + T++K L L S
Sbjct: 134 EFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
+D G Y+ N G +A L V
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-----LSSPKKREIFDGENII 615
E+ E+K V T++ +P P++ W +N K + K R + +II
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVR--YATWSII 76
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ ++ +D G+Y + NE GS H ++ V VE+ PI
Sbjct: 77 M---DSVVPSDKGNYTCIVENEYGSINHTYQLDV-VERSPHRPI 116
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 247 ITEGESAVLSVQVGGEPSPK-VEWYKDG--KLIKDRQ----ITSEKNTHTLTLIQCSTKD 299
I+ GES QV G+ K + W+ KL ++Q + ++ ++ TLT+ + D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 300 KGRYSVKVTNKEGT-VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADV 357
G Y VT ++GT E+ N+ + Q K F E KE E+AV+ +V S +
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 358 KWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
W G+++ K V L IR I DEG Y C
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRC 172
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 125 ITEGESAVLSVQVGGEPSPK-VEWYKDG--KLIKDRQ----ITSEKNTHTLTLIQCSTKD 177
I+ GES QV G+ K + W+ KL ++Q + ++ ++ TLT+ + D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
G Y VT ++GT +S A +NV
Sbjct: 74 AGIYKCVVTAEDGT-QSEATVNV 95
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 68/189 (35%), Gaps = 13/189 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P T + KP+ ++L P P WY E VV +D+ S
Sbjct: 218 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS-- 275
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ IK + G Y V N G ++ + V P I P V G A
Sbjct: 276 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--PLSAKIDPPTQTVDF--GRPA 331
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
V + Q G P V W KDGK I + L + +DKG Y V N +
Sbjct: 332 VFTCQYTGNPIKTVSWMKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRES 384
Query: 192 VESAANLNV 200
E++A L +
Sbjct: 385 AEASAELKL 393
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 358 KWFK--DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
+W+K +G K + + K L+I++ V D G+Y C S+ + L V
Sbjct: 251 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310
Query: 412 VE-LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGK 468
L +I P Q V R A F + T G+ + V W KDGK I SE+V L I+
Sbjct: 311 TAPLSAKIDPPTQTVDFGR--PAVFTCQYT-GNPIKTVSWMKDGKAIGHSESV-LRIESV 366
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
K+ ED G Y C V + D+ES
Sbjct: 367 KK---------EDKGMYQCFVRN--DRES 384
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 50/233 (21%)
Query: 97 EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLI 154
+ ++ I +++ P P++++ ++ + S + Q G P+P WYK +G
Sbjct: 204 KGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYKFIEGTTR 261
Query: 155 KDRQITSEKN---THTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNVDXXXXXXXX 209
K + +++ + TL + +D G+Y V N G +VE+ +
Sbjct: 262 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA--------- 312
Query: 210 XXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 269
P I P V G AV + Q G P V W
Sbjct: 313 -----------------------PLSAKIDPPTQTVDF--GRPAVFTCQYTGNPIKTVSW 347
Query: 270 YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
KDGK I + L + +DKG Y V N + E++A L +
Sbjct: 348 MKDGKAIGHSE-------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 23/189 (12%)
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK--DGKLIKDRQITSEK 285
+++ P P++++ ++ + S + Q G P+P WYK +G K + +++
Sbjct: 213 ISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYKFIEGTTRKQAVVLNDR 270
Query: 286 N---THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD--DLEVKE 340
+ TL + +D G+Y V N G L V A K+D V
Sbjct: 271 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDF 327
Query: 341 RENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
AV + T + V W KDG+ I S+ V L I ++ D+G Y C
Sbjct: 328 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCF 377
Query: 400 LPDQETSAE 408
+ + SAE
Sbjct: 378 VRNDRESAE 386
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETDAGD 629
TI L+ + PAPS W+ K + + +K+ + + + L +K+A E D+G
Sbjct: 235 TISLLCPAQGFPAPSFRWY---KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE-DSGK 290
Query: 630 YKVVATNELGSATHGARVTVDVEKVGR--PPINSIDIDRNHVHHLDNIDSP 678
Y V N +G + +TV + PP ++D R V +P
Sbjct: 291 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP 341
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 129/322 (40%), Gaps = 59/322 (18%)
Query: 231 GKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD----RQITSE 284
G + P L EP + + + A + + G P P++ W + DG + D RQI+S+
Sbjct: 5 GDQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 64
Query: 285 KNTHTLTLIQCSTKDKGR------YSVKVTNKEGTVESAANLNVDQGKAEFIKK-LDDLE 337
L +D + Y+ N+ G++ S +++V A++ + ++
Sbjct: 65 GK---LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRAVVAQYYEADVNKEH 120
Query: 338 VKERENAVLEVEVTSDKAD----VKWFKDGQE-----IKTSKKVTIEKKGTIRKLLIRNI 388
V +AV++ + S AD V W D +E + K + G +L IR +
Sbjct: 121 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREV 177
Query: 389 SVHD-EGEYTCSLPDQ--------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
D Y C + T L + E P S P V + E+ +
Sbjct: 178 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE-PISSSAPRTPALVQK----PLELMV 232
Query: 440 TKGDALV-----------KWYKDGKEIAFSENVTLSIDGKKQ---KLIIFSAGLEDAGEY 485
+L+ +WYK + + V L+ D KQ LII A +ED+G+Y
Sbjct: 233 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN-DRVKQVSGTLIIKDAVVEDSGKY 291
Query: 486 SCRVGDTGDKESKAT-LTVEAP 506
C V ++ ES T LTV AP
Sbjct: 292 LCVVNNSVGGESVETVLTVTAP 313
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 259 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 314
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 33 AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 92
Query: 315 ESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEVEVTSD 353
+L+V + G EF+ K+ + + + VE
Sbjct: 93 NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGS 151
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAEL 409
K + +K + T +K+ I L IRN++ D GEYTC S+ SA L
Sbjct: 152 KYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 209
Query: 410 NVVELP 415
V+ P
Sbjct: 210 TVLPAP 215
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 6 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 58
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 59 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 100
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 4 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 59
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 60 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSRHRPI 109
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 574 GTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENIILELKE 620
G + + KV + P I W ++ P L K + D E +L ++
Sbjct: 124 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 183
Query: 621 ADSETDAGDYKVVATNELGSATHGARVTV 649
E DAG+Y +A N +G + H A +TV
Sbjct: 184 VTFE-DAGEYTCLAGNSIGISFHSAWLTV 211
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKN 164
G P+ L D S+ EG+ ++S++V GEP P V W ++ + ++ Q +E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L ++ D G Y+ K N+ G + A L V
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKN 286
G P+ L D S+ EG+ ++S++V GEP P V W ++ + ++ Q +E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L ++ D G Y+ K N+ G + A L V
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P F +++V+E + + +V+ P P + W RN +P + ++R + E + L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP-VRPDQRRFAEEAEGGLCRL 64
Query: 619 KEADSET-DAGDYKVVATNELGSATHGARVTVDVE 652
+ +E DAG Y A NE G+ AR+ V E
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PPTF E +V + +R+ P+P + W N +P++ D+ F+++++ +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR-PDQRRFAEEAE--GGL 61
Query: 72 SIVTIKSIKKREEGVYTVVAKN----REGEAKMDI 102
+ I + ++ + G YT A N R+ EA++++
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1WAA|A Chain A, Ig27 Protein Domain
pdb|1WAA|B Chain B, Ig27 Protein Domain
pdb|1WAA|C Chain C, Ig27 Protein Domain
pdb|1WAA|D Chain D, Ig27 Protein Domain
Length = 93
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
E+ PL V+V E A FEIEL++ D +W G+ +A S + + DGKK LI+ +
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHN 66
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
L GE S + +T +S A L V
Sbjct: 67 CQLGMTGEVSFQAANT---KSAANLKV 90
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 261 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 316
G P P + W K+GK K D +I K + T ++I S DKG Y+ V N+ G++
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 102
Query: 317 AANLNV-DQGKAEFIKKLD---DLEVKERENAVLEVEVTSD-KADVKWFK----DGQEI- 366
L+V ++ I + + V N +V SD + ++W K +G +I
Sbjct: 103 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG 162
Query: 367 ----------KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
KT+ T +K+ + L +RN+S D GEYTC S+ SA L V+
Sbjct: 163 PDNLPYVQILKTAGVNTTDKEMEV--LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
Query: 413 E 413
E
Sbjct: 221 E 221
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENI 614
KTV + M KV + P P I W ++ N P + K + D E
Sbjct: 126 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 185
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+L L+ E DAG+Y +A N +G + H A +TV
Sbjct: 186 VLHLRNVSFE-DAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + +++ ++ D+G YTC + ++ S +L+V
Sbjct: 49 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 108
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIAFSENVT 462
VE P + + ++ +E + ++W K +G +I
Sbjct: 109 VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPY 168
Query: 463 LSI---------DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
+ I D + + L + + EDAGEY+C G++ G A LTV
Sbjct: 169 VQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 75/205 (36%), Gaps = 49/205 (23%)
Query: 139 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 194
G P P + W K+GK K D +I K + T ++I S DKG Y+ V N+ G++
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 102
Query: 195 AANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGESA 253
L+V P +P + L + ++ G +
Sbjct: 103 TYQLDVVER----------------------------SPHRPILQAGLPANKTVALGSNV 134
Query: 254 VLSVQVGGEPSPKVEWYK----DGKLIKDRQI------------TSEKNTHTLTLIQCST 297
+V +P P ++W K +G I + T++K L L S
Sbjct: 135 EFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 194
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
+D G Y+ N G +A L V
Sbjct: 195 EDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-----LSSPKKREIFDGENII 615
E+ E+K V T++ +P P++ W +N K + K R + +II
Sbjct: 20 EKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVR--YATWSII 77
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ ++ +D G+Y + NE GS H ++ V VE+ PI
Sbjct: 78 M---DSVVPSDKGNYTCIVENEYGSINHTYQLDV-VERSPHRPI 117
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN 164
++G P L I EG + +V G P PK+ W+KDGK I K T +++
Sbjct: 2 SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 165 ---THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
T +L + D G Y++ N +G + L V
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN 286
++G P L I EG + +V G P PK+ W+KDGK I K T +++
Sbjct: 2 SSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 61
Query: 287 ---THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T +L + D G Y++ N +G + L V
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
GS G AP F + + + E + +V +P P I WF++ K + SPK D
Sbjct: 4 GSSG-APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI--SPKS----DHY 56
Query: 613 NIILEL-------KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
I +L A + D G+Y ++A N G + R+ V G
Sbjct: 57 TIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
P F K K E VT R+ P+P + W+ +G+ + + ++ Q D+ S
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD-HYTIQRDLDGTCS 67
Query: 73 IVTIKSIKKREEGVYTVVAKNREG 96
+ T S ++G YT++A N +G
Sbjct: 68 LHTTASTLD-DDGNYTIMAANPQG 90
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 261 GEPSPKVEWYKDGKLIK-DRQITSEKNTH-TLTLIQCST--KDKGRYSVKVTNKEGTVES 316
G P P + W K+GK K D +I K + T ++I S DKG Y+ V N+ G++
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 317 AANLNV-DQGKAEFIKKLD---DLEVKERENAVLEVEVTSD-KADVKWFK----DGQEI- 366
L+V ++ I + + V N +V SD + ++W K +G +I
Sbjct: 102 TYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIG 161
Query: 367 ----------KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
KT+ T +K+ + L +RN+S D GEYTC S+ SA L V+
Sbjct: 162 PDNLPYVQILKTAGVNTTDKEMEV--LHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Query: 413 E 413
E
Sbjct: 220 E 220
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENI 614
KTV + M KV + P P I W ++ N P + K + D E
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+L L+ E DAG+Y +A N +G + H A +TV
Sbjct: 185 VLHLRNVSFE-DAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + +++ ++ D+G YTC + ++ S +L+V
Sbjct: 48 LRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIAFSENVT 462
VE P + + ++ +E + ++W K +G +I
Sbjct: 108 VERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPY 167
Query: 463 LSI---------DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
+ I D + + L + + EDAGEY+C G++ G A LTV
Sbjct: 168 VQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 49/205 (23%)
Query: 139 GEPSPKVEWYKDGKLIK-DRQITSEK---NTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 194
G P P + W K+GK K D +I K T ++ + DKG Y+ V N+ G++
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 195 AANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGESA 253
L+V P +P + L + ++ G +
Sbjct: 102 TYQLDVVER----------------------------SPHRPILQAGLPANKTVALGSNV 133
Query: 254 VLSVQVGGEPSPKVEWYK----DGKLIKDRQI------------TSEKNTHTLTLIQCST 297
+V +P P ++W K +G I + T++K L L S
Sbjct: 134 EFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSF 193
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
+D G Y+ N G +A L V
Sbjct: 194 EDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-----LSSPKKREIFDGENII 615
E+ E+K V T++ +P P++ W +N K + K R + +II
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVR--YATWSII 76
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ ++ +D G+Y + NE GS H ++ V VE+ PI
Sbjct: 77 M---DSVVPSDKGNYTCIVENEYGSINHTYQLDV-VERSPHRPI 116
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN---THTLTLIQCS 174
L I EG + +V G P PK+ W+KDGK I K T +++ T +L +
Sbjct: 14 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 73
Query: 175 TKDKGRYSVKVTNKEGTVESAANLNV 200
D G Y++ N +G V L V
Sbjct: 74 LDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKN---THTLTLIQCS 296
L I EG + +V G P PK+ W+KDGK I K T +++ T +L +
Sbjct: 14 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 73
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
D G Y++ N +G V L V
Sbjct: 74 LDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-----RE 607
GS AP F + + + E + +V +P P I WF++ K + SPK +
Sbjct: 2 GSNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI--SPKSDHYTIQR 59
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD-VEKVGR 656
DG + A + D G+Y ++A N G + R+ V V + GR
Sbjct: 60 DLDGTCSL--HTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
P F K K E VT R+ P+P + W+ +G+ + + ++ Q D+ S
Sbjct: 8 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD-HYTIQRDLDGTCS 66
Query: 73 IVTIKSIKKREEGVYTVVAKNREG 96
+ T S ++G YT++A N +G
Sbjct: 67 LHTTASTLD-DDGNYTIMAANPQG 89
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G A+F + L + E E A+L E+ S A V+W K + ++ + + ++GT +L
Sbjct: 7 GPAKFTEGLRNEEAVEGATAMLWCEL-SKVAPVEWRKGPENLRDGDRYILRQEGTRCELQ 65
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELP 415
I +++ D GEY C + TSA L + LP
Sbjct: 66 ICGLAMADAGEYLCVCGQERTSATLTIRALP 96
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P + + L++ + A EL+K A V+W K + + + L +G + +L I
Sbjct: 8 PAKFTEGLRNEEAVEGATAMLWCELSKV-APVEWRKGPENLRDGDRYILRQEGTRCELQI 66
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ DAGEY C G + + ATLT+ A
Sbjct: 67 CGLAMADAGEYLCVC---GQERTSATLTIRA 94
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
F KK +EV AV E E V+W + G +I S K + +GT L +R +
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV 70
Query: 389 SVHDEGEYTCSLPDQETSAELNVVE 413
D+G Y + +L V+E
Sbjct: 71 GPADQGSYAVIAGSSKVKFDLKVIE 95
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDA 482
+ V+V+ A FE E + V+W + G +I+ S L+ +G + L + G D
Sbjct: 16 RSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQ 75
Query: 483 GEYSCRVGDT 492
G Y+ G +
Sbjct: 76 GSYAVIAGSS 85
>pdb|1WAA|F Chain F, Ig27 Protein Domain
Length = 93
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
E+ PL V+V E A FEIEL++ D +W G+ +A S + + DGKK LI+ +
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHN 66
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
L GE S + T +S A L V
Sbjct: 67 CQLGMTGEVSFQAAQT---KSAANLKV 90
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
++++ L V++S E F + WY G++I ++ V + +G + +L I+
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 63
Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
+A +EDAG Y C+ D + +AT+ +E
Sbjct: 64 NANIEDAGIYRCQATDAKGQTQEATVVLE 92
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWY--KDGKLIKDRQITSEKN--THTLTLIQCST 297
L V ++ GES + GEP ++WY + K+I +++ +K LT+ +
Sbjct: 9 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 298 KDKGRYSVKVTNKEG-TVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA- 355
+D G Y + T+ +G T E+ L + Q K F + + E K+ E+A + V+S A
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 126
Query: 356 DVKWFKDGQEIKT 368
V W +E+ T
Sbjct: 127 AVSWLYHNEEVTT 139
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 333 LDDLEVKERENAVLEVEVTSDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
L +E+ E+ + + W+ G++I ++++V ++K+G +L I N ++
Sbjct: 9 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 68
Query: 392 DEGEYTCSLPD 402
D G Y C D
Sbjct: 69 DAGIYRCQATD 79
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 38 AVPEPDLLWYYN--GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95
A+ EP+ + +YN GE + T VV + S +TI + + G+Y A + +
Sbjct: 26 AIGEPESIDWYNPQGEKIISTQRVVVQKEGVR----SRLTIYNANIEDAGIYRCQATDAK 81
Query: 96 GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW 147
G+ + V +K + E + +GE A + +V P+P V W
Sbjct: 82 GQTQ---EATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DR--QITSEKNTHT 167
E P I E + ++ +G A V+V G+P P+ EWYK+G I+ DR E N
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L + + +D VK N G S A L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DR--QITSEKNTHT 289
E P I E + ++ +G A V+V G+P P+ EWYK+G I+ DR E N
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + + +D VK N G S A L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG 85
+ S+ VR+V P+P+ WY NG ++ +D + + D V + I+ + +
Sbjct: 19 QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSA 75
Query: 86 VYTVVAKNREGE 97
V A N GE
Sbjct: 76 SIMVKAINIAGE 87
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
+AP ER + +TV + +V P P W++N + S + + +N+
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L +++ E D+ V A N G + A + V
Sbjct: 64 LVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIF 475
++++ L V++S E F + WY G++I ++ V + +G + +L I+
Sbjct: 2 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 61
Query: 476 SAGLEDAGEYSCRVGDTGDKESKATLTVE 504
+A +EDAG Y C+ D + +AT+ +E
Sbjct: 62 NANIEDAGIYRCQATDAKGQTQEATVVLE 90
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 333 LDDLEVKERENAVLEVEVTSDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
L +E+ E+ + + W+ G++I ++++V ++K+G +L I N ++
Sbjct: 7 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 66
Query: 392 DEGEYTCSLPD 402
D G Y C D
Sbjct: 67 DAGIYRCQATD 77
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWY--KDGKLIKDRQITSEKN--THTLTLIQCST 175
L V ++ GES + GEP ++WY + K+I +++ +K LT+ +
Sbjct: 7 LSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 65
Query: 176 KDKGRYSVKVTNKEGTVESA 195
+D G Y + T+ +G + A
Sbjct: 66 EDAGIYRCQATDAKGQTQEA 85
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWY--KDGKLIKDRQITSEKN--THTLTLIQCST 297
L V ++ GES + GEP ++WY + K+I +++ +K LT+ +
Sbjct: 7 LSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 65
Query: 298 KDKGRYSVKVTNKEGTVESA 317
+D G Y + T+ +G + A
Sbjct: 66 EDAGIYRCQATDAKGQTQEA 85
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 130/325 (40%), Gaps = 55/325 (16%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
PP F K+ K + + P+P + W G+ + Q + + F + +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG--- 62
Query: 70 YVSIVTIKSIKK-REEGVYTVVAKNREGE----AKMDIPVKVNTGKPEKPSI-LEPLHDV 123
+++ I+ ++ R+E VY VA+N GE AK+ + ++ + P+I + P V
Sbjct: 63 --AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV-LREDQLPSGFPNIDMGPQLKV 119
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKG 179
+ +A + G P P++ W+KD L D ++ + + L + D+G
Sbjct: 120 -VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 180 RYSVKVTNKEGT-VESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSI 238
+Y TN G S ANL V +V P + SI
Sbjct: 178 KYECVATNSAGVRYSSPANLYV--------------------------RVQNVAP-RFSI 210
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQCST 297
L H++ + G + V V G P P V+W + + L + + +N LT +
Sbjct: 211 LPMSHEI-MPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV---- 264
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
KD Y+ + G +E+ A + V
Sbjct: 265 KDSANYTCVAMSSLGVIEAVAQITV 289
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 122/317 (38%), Gaps = 50/317 (15%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 172
I EP + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKEPKDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 173 C--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
+ +D+ Y N G + A L V L Q+ +
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTV----------------------LREDQLPS 106
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----N 286
G P + P V + +A + G P P++ W+KD L D ++ +
Sbjct: 107 GFPNID--MGPQLKV-VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLR 162
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVD-QGKAEFIKKLD-DLEVKEREN 343
+ L + D+G+Y TN G S ANL V Q A L E+ N
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN 222
Query: 344 A-VLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---- 398
+ V V S VKW + +++ T E + + ++ V D YTC
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDL------TPEDDMPVGRNVLELTDVKDSANYTCVAMS 276
Query: 399 SLPDQETSAELNVVELP 415
SL E A++ V LP
Sbjct: 277 SLGVIEAVAQITVKSLP 293
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
K V+ T ++ +P P I WF++ P+ S I + L++ E+ ETD
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQ 176
Query: 628 GDYKVVATNELG 639
G Y+ VATN G
Sbjct: 177 GKYECVATNSAG 188
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENII 615
+ P FI+ +++ G + + P P + W + K + S + FD +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L ++ + D Y+ VA N +G T A++TV
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTHTLT 169
P I+EP D+++TEG +A L + G + V W +G L+ R S + TL
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTSMT-SVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ +D G+Y+ VTN G ++A LNV
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTHTLT 291
P I+EP D+++TEG +A L + G + V W +G L+ R S + TL
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTSMT-SVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ +D G+Y+ VTN G ++A LNV
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTIRKLLIRNISV 390
DL V E A L+ + V W + T ++++ GT+ N++V
Sbjct: 321 DLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN---FTNVTV 377
Query: 391 HDEGEYTC----SLPDQETSAELNV 411
D G+YTC S + SA LNV
Sbjct: 378 QDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 75/206 (36%), Gaps = 49/206 (23%)
Query: 137 VGGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTV 192
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 43 AGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 102
Query: 193 ESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGE 251
+L+V P +P + L + S G
Sbjct: 103 NHTYHLDVVER----------------------------SPHRPILQAGLPANASTVVGG 134
Query: 252 SAVLSVQVGGEPSPKVEWYK-----------DG----KLIKDRQITSEKNTHTLTLIQCS 296
+V + P ++W K DG K++K I S N L L +
Sbjct: 135 DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS-NAEVLALFNVT 193
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
D G Y KV+N G +A L V
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTV 219
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 20/177 (11%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
P P + W NG+ ++ + + H S++ ++S+ ++G YT V +N G
Sbjct: 47 PMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLI-MESVVPSDKGNYTCVVENEYGSIN 103
Query: 100 MDIPVKVNTGKPEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYK--------- 149
+ V P +P + L + S G +V + P ++W K
Sbjct: 104 HTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163
Query: 150 --DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
DG K++K I S N L L + D G Y KV+N G +A L V
Sbjct: 164 GPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 357 VKWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNV 411
++W K+G+E K ++ K + L++ ++ D+G YTC + ++ S L+V
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIAFSENVT 462
VE P + + + ++E + ++W K +G +
Sbjct: 111 VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY 170
Query: 463 LSI-------DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV----EAPAVE 509
L + + L +F+ DAGEY C+V + G A LTV +AP E
Sbjct: 171 LKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 14 RAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 69
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPI 119
>pdb|1WAA|E Chain E, Ig27 Protein Domain
Length = 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
E+ PL V+V E A FEIEL++ D +W G+ +A S + + +GKK LI+ +
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEEGKKHILILHN 66
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
L GE S + +T +S A L V
Sbjct: 67 CQLGMTGEVSFQAANT---KSAANLKV 90
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 31/188 (16%)
Query: 26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY-------VSIVTIKS 78
EN+ V L P + W ++ +T +V + SY + +T KS
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFD---QGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74
Query: 79 IKKREEGVYTVV----AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLS 134
+ + + G YT + N GE K+ + V V P KP++ P S T G AVL+
Sbjct: 75 VTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV---PPSKPTVNIP---SSATIGNRAVLT 128
Query: 135 V-QVGGEPSPKVEWYKDG----------KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
+ G P + W+KDG + + T L S D G YS
Sbjct: 129 CSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 184 KVTNKEGT 191
+ N GT
Sbjct: 189 EARNGYGT 196
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 23/177 (12%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGK-----LIKDRQITSEKNTHT------LTL 292
+V I E LS G SP+VEW D + + +IT+ +T
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72
Query: 293 IQCSTKDKGRYSVKVT----NKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
+ +D G Y+ V+ N G V+ + V K + + R
Sbjct: 73 KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT-VNIPSSATIGNRAVLTCSE 131
Query: 349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKG-------TIRKLLIRNISVHDEGEYTC 398
+ S ++ WFKDG + T+ K T T +L+ +S D GEY+C
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 30/170 (17%)
Query: 255 LSVQVGGEPSPKVEWYKDGKLIK-DRQITSEK--NTHTLTLIQCST--KDKGRYSVKVTN 309
GG P P W K+GK K + +I K N H +LI S DKG Y+ V N
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH-WSLIXESVVPSDKGNYTCVVEN 89
Query: 310 KEGTVESAANLNVDQ---------------------GKAEFIKKLDDLEVKERENAVLEV 348
+ G++ +L+V + G EF+ K+ + + + V
Sbjct: 90 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHV 148
Query: 349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
E K + +K + T +K+ I L IRN++ D GEYTC
Sbjct: 149 EKNGSKYGPDGLPYLKVLKAAGVNTTDKE--IEVLYIRNVTFEDAGEYTC 196
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 358 KWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNVV 412
+W K+G+E K ++ K + L+ ++ D+G YTC + ++ S L+VV
Sbjct: 44 RWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVV 103
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIAFSENVTL 463
E P + + + ++E + ++W K +G + L
Sbjct: 104 ERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL 163
Query: 464 SI---------DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
+ D + + L I + EDAGEY+C G++ G A LTV
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P W K+GK K + +I
Sbjct: 8 PYWTNTEKXEKR-----LH--AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGG 60
Query: 162 EK--NTHTLTLIQCST--KDKGRYSVKVTNKEGTVESAANLNV 200
K N H +LI S DKG Y+ V N+ G++ +L+V
Sbjct: 61 YKVRNQH-WSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 555 PGQAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
P AP + E+ E++ V T++ +P P+ W +N K K+
Sbjct: 4 PEGAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEF----KQEHRIG 59
Query: 611 GENIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
G + + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 60 GYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPI 111
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 574 GTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENIILELKE 620
G + + KV + P I W ++ P L K + D E +L ++
Sbjct: 126 GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 185
Query: 621 ADSETDAGDYKVVATNELGSATHGARVTV 649
E DAG+Y +A N +G + H A +TV
Sbjct: 186 VTFE-DAGEYTCLAGNSIGISFHSAWLTV 213
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 111 PEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKN 164
P P +E L D+SI EG+ ++ GEP+P+V W G+ I ++ I + +
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
TL ++ +D G Y++ + N+ G+ + N+++
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 233 PEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKN 286
P P +E L D+SI EG+ ++ GEP+P+V W G+ I ++ I + +
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
TL ++ +D G Y++ + N+ G+ + N+++
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDM 67
GIPP + +E +T+ P P++ W G + QE + D+
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
+ + I ++K++ G+YT+ N G + + + +
Sbjct: 63 TTLI----IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 169
+P + + + EG+SA +V P V W+KD + +K ++ N + LT
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + DKG Y+V+ N GT E LNV
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 291
+P + + + EG+SA +V P V W+KD + +K ++ N + LT
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + DKG Y+V+ N GT E LNV
Sbjct: 436 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P FI + V E + +V AS P + W ++++ L S K + ++G + L +
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 619 KEADSETDAGDYKVVATNELGS 640
+ D G+Y V A N G+
Sbjct: 437 NRVKGD-DKGEYTVRAKNSYGT 457
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEV-TSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK 382
+ + FI K EV E ++A V S V W KD +E+K S K G
Sbjct: 374 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 433
Query: 383 LLIRNISVHDEGEYT 397
L I + D+GEYT
Sbjct: 434 LTINRVKGDDKGEYT 448
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
P F K E R++A P + W+ + L+++ V + + + + Y
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS--VKYMKRYNGNDYG- 433
Query: 73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
+TI +K ++G YTV AKN G K +I V +N + +P EPL
Sbjct: 434 -LTINRVKGDDKGEYTVRAKNSYG-TKEEI-VFLNVTRHSEPLKFEPL 478
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIE-LTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
E P V +V + A+F + +V W+KD +E+ S +G
Sbjct: 374 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 433
Query: 472 LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
L I +D GEY+ R ++ G KE L V
Sbjct: 434 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 169
+P + + + EG+SA +V P V W+KD + +K ++ N + LT
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + DKG Y+V+ N GT E LNV
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---NTHTLT 291
+P + + + EG+SA +V P V W+KD + +K ++ N + LT
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + DKG Y+V+ N GT E LNV
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P FI + V E + +V AS P + W ++++ L S K + ++G + L +
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 619 KEADSETDAGDYKVVATNELGS 640
+ D G+Y V A N G+
Sbjct: 543 NRVKGD-DKGEYTVRAKNSYGT 563
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEV-TSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK 382
+ + FI K EV E ++A V S V W KD +E+K S K G
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 539
Query: 383 LLIRNISVHDEGEYT 397
L I + D+GEYT
Sbjct: 540 LTINRVKGDDKGEYT 554
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIE-LTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
E P V +V + A+F + +V W+KD +E+ S +G
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 539
Query: 472 LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
L I +D GEY+ R ++ G KE L V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 243 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH---TLTLIQCSTKD 299
H V + +L+VQ +P+ +V+WY +G +++ NT TL ++ C T D
Sbjct: 18 HRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDD 75
Query: 300 KGRYSVKVTNKEGTVESAANLNVDQG 325
G Y TN +G A L+V G
Sbjct: 76 SGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 121 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH---TLTLIQCSTKD 177
H V + +L+VQ +P+ +V+WY +G +++ NT TL ++ C T D
Sbjct: 18 HRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDD 75
Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
G Y TN +G A L+V
Sbjct: 76 SGTYRAVCTNYKGEASDYATLDV 98
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
T ++ V +N+ L V+ + P ++ WY+NG LQE+ ++ +++ S V
Sbjct: 12 TLRMRSHRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSG----VLT 65
Query: 74 VTIKSIKKREEGVYTVVAKNREGEA 98
+ I + G Y V N +GEA
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
AP R V R + V++ P + W+ N L S K + + +L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH--YTNTSGVL 64
Query: 617 ELKEADSET-DAGDYKVVATNELGSATHGARVTVDV 651
L+ D T D+G Y+ V TN G A+ A T+DV
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYA--TLDV 98
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY 396
A+VKW+ +G E++ S K+ + L I + D G Y
Sbjct: 38 AEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTY 79
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTK 176
D+SI EG+ ++ GEP+P+V W G+ I ++ I + + TL ++ +
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 177 DKGRYSVKVTNKEGTVESAANLNV 200
D G Y++ + N+ G+ + N+++
Sbjct: 76 DGGLYTLSLGNEFGSDSATVNIHI 99
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTK 298
D+SI EG+ ++ GEP+P+V W G+ I ++ I + + TL ++ +
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 299 DKGRYSVKVTNKEGTVESAANLNV 322
D G Y++ + N+ G+ + N+++
Sbjct: 76 DGGLYTLSLGNEFGSDSATVNIHI 99
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDM 67
GIPP + +E +T+ P P++ W G + QE + D+
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
+ + I ++K++ G+YT+ N G + + + +
Sbjct: 65 TTLI----IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
>pdb|1TIT|A Chain A, Titin, Ig Repeat 27, Nmr, Minimized Average Structure
pdb|1TIU|A Chain A, Titin, Ig Repeat 27, Nmr, 24 Structures
Length = 98
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
E+ PL V+V E A FEIEL++ D +W G+ + S + + DGKK LI+ +
Sbjct: 12 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 71
Query: 477 AGLEDAGEYSCRVGDTGDKESKATLTV 503
L GE S + + +S A L V
Sbjct: 72 CQLGMTGEVSFQAANA---KSAANLKV 95
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 86/241 (35%), Gaps = 58/241 (24%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P W K+GK K + +I
Sbjct: 15 PYWTNTEKXEKR-----LH--AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGG 67
Query: 162 EK--NTHTLTLIQCST--KDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXX 217
K N H +LI S DKG Y+ V N+ G++ +L+V
Sbjct: 68 YKVRNQH-WSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVER-------------- 112
Query: 218 XXXXXLDTLQVNTGKPEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYK----- 271
P +P + L + S G +V + P ++W K
Sbjct: 113 --------------SPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 158
Query: 272 ------DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
DG K++K I S N L L + D G Y KV+N G +A L
Sbjct: 159 GSKYGPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 217
Query: 322 V 322
V
Sbjct: 218 V 218
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 20/177 (11%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
P P W NG+ ++ + + H S++ +S+ ++G YT V +N G
Sbjct: 46 PXPTXRWLKNGKEFKQEHRIGGYKVRNQH--WSLIX-ESVVPSDKGNYTCVVENEYGSIN 102
Query: 100 MDIPVKVNTGKPEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYK--------- 149
+ V P +P + L + S G +V + P ++W K
Sbjct: 103 HTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 162
Query: 150 --DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
DG K++K I S N L L + D G Y KV+N G +A L V
Sbjct: 163 GPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 358 KWFKDGQEIKTSKKVTIEK-KGTIRKLLIRNISVHDEGEYTCSLPDQETS----AELNVV 412
+W K+G+E K ++ K + L+ ++ D+G YTC + ++ S L+VV
Sbjct: 51 RWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVV 110
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIAFSENVTL 463
E P + + + ++E + ++W K +G + L
Sbjct: 111 ERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYL 170
Query: 464 SI-------DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV----EAPAVE 509
+ + L +F+ DAGEY C+V + G A LTV +AP E
Sbjct: 171 KVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 228
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P+ W +N K K+ G
Sbjct: 13 RAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEF----KQEHRIGGY 68
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 69 KVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSPHRPI 118
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 23/178 (12%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 294
I +P+ + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKKPVDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 295 C--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEVKERENAVLE 347
+ +D+ Y N G V A L V DQ F I L+V ER
Sbjct: 69 PLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATM 128
Query: 348 VEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH-----DEGEYTC 398
+ S D + WFKD + S G I++L + + D+G+Y C
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPST-----SNGRIKQLRSGGLQIESSEETDQGKYEC 181
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 21/202 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
PP F KK + + P+P + W G+ + Q + + F + +
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG--- 62
Query: 70 YVSIVTIKSIKK-REEGVYTVVAKNREGE----AKMDIPVKVNTGKPEKPSI-LEPLHDV 123
+++ I+ ++ R+E +Y VA+N GE AK+ + ++ + P P+I + P V
Sbjct: 63 --AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTV-LREDQLPPGFPNIDMGPQLKV 119
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKG 179
+ +A + G P P++ W+KD L D ++ + + L + D+G
Sbjct: 120 -VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSTSNGRIKQLRSGGLQIESSEETDQG 177
Query: 180 RYSVKVTNKEGT-VESAANLNV 200
+Y +N G S ANL V
Sbjct: 178 KYECVASNSAGVRYSSPANLYV 199
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 39/221 (17%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 172
I +P+ + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKKPVDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 173 C--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
+ +D+ Y N G V A L V L+ +
Sbjct: 69 PLRTPRDENIYECVAQNPHGEVTVHAKLTV-------------------------LREDQ 103
Query: 231 GKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK---- 285
P P+I + P V + +A + G P P++ W+KD L D ++ +
Sbjct: 104 LPPGFPNIDMGPQLKV-VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSTSNGRIKQL 161
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNVDQG 325
+ L + D+G+Y +N G S ANL V G
Sbjct: 162 RSGGLQIESSEETDQGKYECVASNSAGVRYSSPANLYVRVG 202
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
K V+ T ++ +P P I WF++ P+ S I + L++ E+ ETD
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQI-ESSEETDQ 176
Query: 628 GDYKVVATNELG 639
G Y+ VA+N G
Sbjct: 177 GKYECVASNSAG 188
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILE 617
P+FI++ ++ G + + P P + W + K + S + FD +L
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDI 664
++ + D Y+ VA N G T A++TV E P +ID+
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDM 113
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 87/239 (36%), Gaps = 54/239 (22%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 16 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXX 218
K N H +L + DKG Y+ V N+ G++ +
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH--------------------- 107
Query: 219 XXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK------- 271
LD ++ + +P + L + S G +V + P ++W K
Sbjct: 108 ----LDVVERSRHRPILQAGLPA--NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGS 161
Query: 272 ----DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
DG K++K I S N L L + D G Y KV+N G +A L V
Sbjct: 162 KYGPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 20/177 (11%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
P P + W NG+ ++ + + H S++ ++S+ ++G YT V +N G
Sbjct: 47 PMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLI-MESVVPSDKGNYTCVVENEYGSIN 103
Query: 100 MDIPVKVNTGKPEKPSILEPL-HDVSITEGESAVLSVQVGGEPSPKVEWYK--------- 149
+ V +P + L + S G +V + P ++W K
Sbjct: 104 HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163
Query: 150 --DG----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
DG K++K I S N L L + D G Y KV+N G +A L V
Sbjct: 164 GPDGLPYLKVLKHSGINSS-NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 557 QAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+AP + E+ E++ V T++ +P P++ W +N K K+ G
Sbjct: 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGY 69
Query: 613 NIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+ + + E+ +D G+Y V NE GS H + V VE+ PI
Sbjct: 70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSRHRPI 119
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 227 QVNTGKPEKPSILEPLHDV-SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK 285
Q + + +L L DV +I EG++ L+ V G+P P+V W K+ K + + K
Sbjct: 108 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLK 167
Query: 286 ----NTHTLTLIQCSTKDKGRYSVKVTNKEGT 313
T T+ ST D G+Y + V NK G+
Sbjct: 168 FEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 199
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 113 KPSILEPLHDV-SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHT 167
+ +L L DV +I EG++ L+ V G+P P+V W K+ K + + K T
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGT 191
T+ ST D G+Y + V NK G+
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGS 199
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
E + A +L G+P V +E + L + P P++ W N + L +TD
Sbjct: 113 EKNRARVLGGLPDV-------VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCN 165
Query: 61 FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
++ +Y TI + + G Y +V KN+ G D V V
Sbjct: 166 LKFEAGRTAYF---TINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
T++E + L V P P + W +N K L + F+ S D+G
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 629 DYKVVATNELGSATHGARVTVDV 651
Y +V N+ GS T V+V +
Sbjct: 188 KYGLVVKNKYGSETSDFTVSVFI 210
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQ 172
P+I L + + + GES +S G P P++ W+KD + L++D I + LT+ +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRR 70
Query: 173 CSTKDKGRYSVKVTNKEGTVESAA 196
+D+G Y+ + + G + A
Sbjct: 71 VRKEDEGLYTCQACSVLGCAKVEA 94
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQ 294
P+I L + + + GES +S G P P++ W+KD + L++D I + LT+ +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRR 70
Query: 295 CSTKDKGRYSVKVTNKEGTVESAA 318
+D+G Y+ + + G + A
Sbjct: 71 VRKEDEGLYTCQACSVLGCAKVEA 94
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
+LE + PT + + + + P P ++W+ + E L E +V D +
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 64
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD 101
+TI+ ++K +EG+YT A + G AK++
Sbjct: 65 N------LTIRRVRKEDEGLYTCQACSVLGCAKVE 93
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLT 67
Query: 618 LKEADSETDAGDYKVVATNELGSA 641
++ E D G Y A + LG A
Sbjct: 68 IRRVRKE-DEGLYTCQACSVLGCA 90
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ WFKD + + + + K G R L IR + DEG YTC
Sbjct: 42 IMWFKDNETLVEDSGIVL-KDGN-RNLTIRRVRKEDEGLYTC 81
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 294
I EP + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKEPKDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 295 C--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEVKERENAVLE 347
+ +D+ Y N G + A L V DQ + F I L+V ER
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATM 128
Query: 348 VEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ S D + WFKD + S K+ L I + D+G+Y C
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
K V+ T ++ +P P I WF++ P+ S I + L++ E+ ETD
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQ 176
Query: 628 GDYKVVATNELG 639
G Y+ VATN G
Sbjct: 177 GKYECVATNSAG 188
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 21/202 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
PP F K+ K + + P+P + W G+ + Q + + F + +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG--- 62
Query: 70 YVSIVTIKSIKK-REEGVYTVVAKNREGE----AKMDIPVKVNTGKPEKPSI-LEPLHDV 123
+++ I+ ++ R+E VY VA+N GE AK+ + ++ + P+I + P V
Sbjct: 63 --AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV-LREDQLPSGFPNIDMGPQLKV 119
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKG 179
+ +A + G P P++ W+KD L D ++ + + L + D+G
Sbjct: 120 -VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 180 RYSVKVTNKEGT-VESAANLNV 200
+Y TN G S ANL V
Sbjct: 178 KYECVATNSAGVRYSSPANLYV 199
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 172
I EP + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKEPKDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 173 C--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
+ +D+ Y N G + A L V L Q+ +
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTV----------------------LREDQLPS 106
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----N 286
G P + P V + +A + G P P++ W+KD L D ++ +
Sbjct: 107 GFPNID--MGPQLKV-VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLR 162
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNV 322
+ L + D+G+Y TN G S ANL V
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENII 615
+ P FI+ +++ G + + P P + W + K + S + FD +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L ++ + D Y+ VA N +G T A++TV
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 346 LEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQET 405
L V ++ V+W+KDG+ + + +V +E+ G + L ++ D GEY C P Q++
Sbjct: 16 LVVHLSGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP-QDS 74
Query: 406 SAELNVVELP 415
L VE P
Sbjct: 75 RIFLVSVEEP 84
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
V+WYKDG+ +A V L G +Q L + A DAGEY C
Sbjct: 27 VRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLC 68
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 294
I EP + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKEPKDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 295 C--STKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEF--IKKLDDLEVKERENAVLE 347
+ +D+ Y N G + A L V DQ + F I L+V ER
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATM 128
Query: 348 VEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ S D + WFKD + S K+ L I + D+G+Y C
Sbjct: 129 LCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
K V+ T ++ +P P I WF++ P+ S I + L++ E+ ETD
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI-ESSEETDQ 176
Query: 628 GDYKVVATNELG 639
G Y+ VATN G
Sbjct: 177 GKYECVATNSAG 188
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 21/202 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHS 69
PP F K+ K + + P+P + W G+ + Q + + F + +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG--- 62
Query: 70 YVSIVTIKSIKK-REEGVYTVVAKNREGE----AKMDIPVKVNTGKPEKPSI-LEPLHDV 123
+++ I+ ++ R+E VY VA+N GE AK+ + ++ + P+I + P V
Sbjct: 63 --AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV-LREDQLPSGFPNIDMGPQLKV 119
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLTLIQCSTKDKG 179
+ +A + G P P++ W+KD L D ++ + + L + D+G
Sbjct: 120 -VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 180 RYSVKVTNKEGT-VESAANLNV 200
+Y TN G S ANL V
Sbjct: 178 KYECVATNSAGVRYSSPANLYV 199
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQ 172
I EP + ++ G ++ + Q G+P P+V W K GK + ++ I +++ + IQ
Sbjct: 10 IKEPKDQIGVSGGVASFV-CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 173 C--STKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNT 230
+ +D+ Y N G + A L V L Q+ +
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTV----------------------LREDQLPS 106
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----N 286
G P + P V + +A + G P P++ W+KD L D ++ +
Sbjct: 107 GFPNID--MGPQLKV-VERTRTATMLCAASGNPDPEITWFKD-FLPVDPSASNGRIKQLR 162
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGT-VESAANLNV 322
+ L + D+G+Y TN G S ANL V
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILE 617
P FI+ +++ G + + P P + W + K + S + FD +L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
++ + D Y+ VA N +G T A++TV
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 123/313 (39%), Gaps = 54/313 (17%)
Query: 346 LEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQET 405
E + + K++ W KD + S ++ +E KG K+ +++ + D G Y+C + D +
Sbjct: 23 FECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDG 82
Query: 406 SAELNVVE---------LPPEISVPLQDVK------VSRDEKASFEIELTK--GDALVKW 448
A +++ L E P VK + + F ++ K G+A V +
Sbjct: 83 IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142
Query: 449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGL--EDAGEYSCRVGDTGDKESKATLTVEAP 506
+ KEI + ID + +F L ED G Y+ ++ D G + +T+ +
Sbjct: 143 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-GKATNHSTVVLVGD 201
Query: 507 AVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE 566
+ L K +A FQ + +W+ Q P F+E
Sbjct: 202 VFKKLQK-----------EAEFQRQ--------EWIR------------KQGPHFVEYLS 230
Query: 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETD 626
+ E + IVW+++ + +S +K + DG I L S+ D
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKDG--ICTLLITEFSKKD 287
Query: 627 AGDYKVVATNELG 639
AG Y+V+ ++ G
Sbjct: 288 AGIYEVILKDDRG 300
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 43/218 (19%)
Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
+FE + + W KD S + + G K K+ G++D G YSC V DT
Sbjct: 22 NFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTD 81
Query: 494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG 553
S + E +L + + H + F PT P+
Sbjct: 82 GIASSYLIDEE--------ELKRLLALSH--EHKF-------------------PTVPVK 112
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRL-MAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
S L +E + EKG +R M K S + + N K + PK + D
Sbjct: 113 S----ELAVE------ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN 162
Query: 613 NIILEL-KEADSETDAGDYKVVATNELGSATHGARVTV 649
I+E+ E + D G Y + G AT+ + V +
Sbjct: 163 TGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVL 198
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-- 610
GS P I + + + V+ G + P PSIVW +N K + + + + +
Sbjct: 3 GSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 62
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSA 641
G IL ++ + D Y+ VA N +G A
Sbjct: 63 GGISILRIEPVRAGRDDAPYECVAENGVGDA 93
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
+P P+ + + ++ T+ + K +P P+I W +N + S + + DG
Sbjct: 108 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-- 165
Query: 614 IILELKEADSETDAGDYKVVATNELGS 640
L++ E E D G Y+ VA N +G+
Sbjct: 166 -FLQI-ENSREEDQGKYECVAENSMGT 190
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 40 PEPDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKK-REEGVYTVVAKNREG 96
P P ++W NG+ + T V +SI+ I+ ++ R++ Y VA+N G
Sbjct: 36 PPPSIVWRKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDAPYECVAENGVG 91
Query: 97 EA-KMDIPVKVNTGKPEK---PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK 152
+A D + + G P I + I G + +++ + G P+P + W K+
Sbjct: 92 DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQT 151
Query: 153 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNV 200
+ L + +D+G+Y N GT S A NL V
Sbjct: 152 KVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV 200
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--ITSEKNTHTLTLI 293
P I+ + + G A G+P P + W K+GK + Q T + ++++
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 294 QCSTKDKGR----YSVKVTNKEGTVESA-ANLNVDQG---KAEF--IKKLDDLEVKEREN 343
+ GR Y N G SA A L + +G A F I + V E +
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 344 AVLEV--EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
VL + + ++ W K+ ++ S K G L I N D+G+Y C
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQGKYEC 182
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 273 GKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE-GTVESAANLNVDQGKAEFIK 331
G+ R+I + +I + KD G Y++ +T++ ++ +V Q +
Sbjct: 58 GQAYSGREIIYSNGSLLFQMI--TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL 115
Query: 332 KLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
++ + VKE ++ L A+++W + Q ++ ++++T+ + +I L I I
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKRE 173
Query: 392 DEGEYTCSLPDQETSAELNVVEL 414
D GEY C + + + N ++L
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKL 196
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 383 LLIRNISVHDEGEYTCSLPDQ---ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
LL + I++ D G YT + D+ T A + P LQ + E S +
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
Query: 440 TKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
D A ++W + + + +E +TLS + L I EDAGEY C + +
Sbjct: 133 LSNDIGANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISN 184
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 273 GKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE-GTVESAANLNVDQGKAEFIK 331
G+ R+I + +I + KD G Y++ +T++ ++ +V Q +
Sbjct: 58 GQAYSGREIIYSNGSLLFQMI--TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL 115
Query: 332 KLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
++ + VKE ++ L A+++W + Q ++ ++++T+ + +I L I I
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKRE 173
Query: 392 DEGEYTCSLPDQETSAELNVVEL 414
D GEY C + + + N ++L
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKL 196
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 383 LLIRNISVHDEGEYTCSLPDQ---ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
LL + I++ D G YT + D+ T A + P LQ + E S +
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
Query: 440 TKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
D A ++W + + + +E +TLS + L I EDAGEY C + +
Sbjct: 133 LSNDIGANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISN 184
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 53/234 (22%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGK----LIKDRQITSEK---- 163
K S+ DV + E ES L+ G SP+VEW + G + + QIT+
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 164 --NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXX 221
++ +T + KD G Y+ V+ + G ++++
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL--------------------- 99
Query: 222 XLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSV-QVGGEPSPKVEWYKDG------- 273
T+ V P KP+I P S+T G AVL+ + G P + W+KDG
Sbjct: 100 ---TVLV---PPSKPTISVP---SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150
Query: 274 ----KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ + T + + L + D G Y + N GT + ++D
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 24/158 (15%)
Query: 57 DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT-GKPEKPS 115
D V FS S +T S+ +++ G YT + G+ ++ + + P KP+
Sbjct: 58 DRVTFSS--------SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT 109
Query: 116 ILEPLHDVSITEGESAVLSV-QVGGEPSPKVEWYKDG-----------KLIKDRQITSEK 163
I P S+T G AVL+ + G P + W+KDG + + T +
Sbjct: 110 ISVP---SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 166
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
+ L + D G Y + N GT + ++D
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 32/210 (15%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGK----LIKDRQITSEK---- 285
K S+ DV + E ES L+ G SP+VEW + G + + QIT+
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 286 --NTHTLTLIQCSTKDKGRYSVKVTNKEGTV--ESAANLNVDQGKAE-FIKKLDDLEVKE 340
++ +T + KD G Y+ V+ + G E + +L V ++ I + +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTS----------KKVTIEKKGTIRKLLIRNISV 390
R S ++ WFKDG + T+ TI+ K L+ ++
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG--DLIFDPVTA 178
Query: 391 HDEGEYTCSLPD------QETSAELNVVEL 414
D GEY C + + +A ++ VEL
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ------ETSAELNVVELP--PEISV 420
+ +VT G + +++ D GEYTC + ++ E S L V+ P P ISV
Sbjct: 57 ADRVTFSSSG----ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV 112
Query: 421 PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE--------NVTLSIDGKKQ 470
P V+ +A G + W+KDG + ++ N + +ID K
Sbjct: 113 P---SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG 169
Query: 471 KLIIFSAGLEDAGEYSCR 488
LI D+GEY C+
Sbjct: 170 DLIFDPVTAFDSGEYYCQ 187
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 17 KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTI 76
K K + ++ +VT+ ++ +P P+++W +N +PL V S + I
Sbjct: 314 KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD---------SGLVI 364
Query: 77 KSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
K +K ++G Y A N G+ + V+VN
Sbjct: 365 KGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 359 WFKDGQEIKTS--KKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-----QETSAELNV 411
+FK+G+++ + ++T + + ++LL + DEG YTC + + Q+ S +L V
Sbjct: 246 YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQ 470
V P P + + V + + + ++T A V W + K ++ T++ G
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVTDSG--- 361
Query: 471 KLIIFSAGLEDAGEYSCRV-GDTGDK 495
L+I D G Y CR + GDK
Sbjct: 362 -LVIKGVKNGDKGYYGCRATNEHGDK 386
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 558 APLFIERFEEKTVKEKGT-IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
AP + ++ E+ V ++G + + KV PAP++VW N KPL S + + D +I
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSGLVIK 365
Query: 617 ELKEADSETDAGDYKVVATNELG 639
+K D G Y ATNE G
Sbjct: 366 GVKNGDK----GYYGCRATNEHG 384
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 114/295 (38%), Gaps = 58/295 (19%)
Query: 24 AEENSEVT-LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR 82
A+ N++VT + R+ A P+ +L + V D SD++ YV T K+
Sbjct: 142 ADPNADVTDFDRRITAGPDGNLYFTI----------VTKEDVSDIYKYV--CTAKNAAVD 189
Query: 83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPS 142
EE V E ++ K N+G +P D+ G+ ++ G P
Sbjct: 190 EEVVLV--------EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPM 241
Query: 143 PKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCST--KDKGRYSVKVTNKEGTVESAAN 197
++K+GK + + +IT T L+ +T +D+G Y+ +V N G + +
Sbjct: 242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS- 300
Query: 198 LNVDXXXXXXXXXXXXXXXXXXXXXLDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSV 257
L V+ K E+ +P + + +G+ +
Sbjct: 301 -------------------------LKLTVVSAPKYEQ----KPEKVIVVKQGQDVTIPC 331
Query: 258 QVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 312
+V G P+P V W + K + + T + L + DKG Y + TN+ G
Sbjct: 332 KVTGLPAPNVVWSHNAKPLSGGRATVTDS--GLVIKGVKNGDKGYYGCRATNEHG 384
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--------DRQITSEKNT 165
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 166 HTLTLIQC--STKDKGRYSVKVTNKEG-TVESAANLNV 200
L ++ S D+G Y N G V A+L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--------DRQITSEKNT 287
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 288 HTLTLIQC--STKDKGRYSVKVTNKEG-TVESAANLNV 322
L ++ S D+G Y N G V A+L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
E PP + + + TL + P P + WY GE + ETD+ +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV-ETDKDDPRSHRMLL 64
Query: 69 SYVSIVTIKSIKKR----EEGVYTVVAKNREGEA 98
S+ ++ + R +EGVY VA+N GEA
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 25/177 (14%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTH---TLTLIQCSTKDK 300
+++ + G P+P + W K+G+ + + +I K H +L + D+
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 301 GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVL------EVEVTSD- 353
G Y+ V NK G++ L+V + + + + + AVL +V SD
Sbjct: 85 GNYTCVVENKFGSIRQTYTLDVLERSPH--RPILQAGLPANQTAVLGSDVEFHCKVYSDA 142
Query: 354 KADVKWFK-----------DGQEIKTSKKVTI-EKKGTIRKLLIRNISVHDEGEYTC 398
+ ++W K DG T K I E +L + N+S D GEY C
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC 199
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 31 TLEVRLVAV--PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
T+ R A P P + W NG + + H S+V ++S+ + G YT
Sbjct: 32 TVRFRCPAAGNPTPSISWLKNGREFRGEHRI--GGIKLRHQQWSLV-MESVVPSDRGNYT 88
Query: 89 VVAKNREGEAKMDIPVKVNTGKPEKPSILE---PLHDVSITEGESAVLSVQVGGEPSPKV 145
V +N+ G + + V P +P IL+ P + ++ G +V + P +
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRP-ILQAGLPANQTAVL-GSDVEFHCKVYSDAQPHI 146
Query: 146 EWYK-----------DGK----LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
+W K DG ++K S + L L S +D G Y + TN G
Sbjct: 147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Query: 191 TVESAANLNV 200
E A L+V
Sbjct: 207 VAEKAFWLSV 216
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 24/97 (24%)
Query: 558 APLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
AP + ER ++K V T+R +P PSI W +N + F GE+
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE----------FRGEH 60
Query: 614 IILELK----------EADSETDAGDYKVVATNELGS 640
I +K E+ +D G+Y V N+ GS
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 97
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
F ++L +L+V+E+ AV + A V W K E++ S K ++G +L I +
Sbjct: 11 FTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISAL 70
Query: 389 SVHDEGEYTCSLPDQETSAELNV 411
D YTC + ++ A+L V
Sbjct: 71 EKADSDTYTCDIGQAQSRAQLLV 93
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVV 60
++L + +G F V+ + V L V A P+P+ W Y + E
Sbjct: 303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDY 362
Query: 61 FSDQSDMH-SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
+++ + YVS + + +K E G YT + N + A + V VNT KP IL
Sbjct: 363 PKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT----KPEILT- 417
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWY 148
+D + + +L G P P ++WY
Sbjct: 418 -YDRLV----NGMLQCVAAGFPEPTIDWY 441
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQET-DEV 59
++L + +G F V+ + V L V A P+P+ W Y + ++
Sbjct: 278 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDY 337
Query: 60 VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
S+ YVS + + +K E G YT + N + A + V VNT KP IL
Sbjct: 338 PKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT----KPEILT- 392
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWY 148
+D + + +L G P P ++WY
Sbjct: 393 -YDRLV----NGMLQCVAAGFPEPTIDWY 416
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
+TV GT L SP P+I+W ++ +L S + I EN +L+++ A D
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTILWRKDG--VLVSTQDSRIKQLENGVLQIRYAK-LGDT 74
Query: 628 GDYKVVATNELGSATHGARVTVDVEKVGRP 657
G Y +A+ G AT A ++V++ G P
Sbjct: 75 GRYTCIASTPSGEATWSAY--IEVQEFGVP 102
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 254 VLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 311
VLS G P P + W KDG L+ +D +I +N L + D GRY+ +
Sbjct: 27 VLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-GVLQIRYAKLGDTGRYTCIASTPS 85
Query: 312 GTVESAANLNVDQ 324
G +A + V +
Sbjct: 86 GEATWSAYIEVQE 98
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 132 VLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
VLS G P P + W KDG L+ +D +I +N L + D GRY+ +
Sbjct: 27 VLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-GVLQIRYAKLGDTGRYTCIASTPS 85
Query: 190 GTVESAANLNV 200
G +A + V
Sbjct: 86 GEATWSAYIEV 96
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD--GENIIL 616
P I + + + V+ G + P PSIVW +N K + + + + + G IL
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 617 ELKEADSETDAGDYKVVATNELGSA 641
++ + D Y+ VA N +G A
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDA 91
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
+P P+ + + ++ T+ + K +P P+I W +N + S + + DG
Sbjct: 106 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG-- 163
Query: 614 IILELKEADSETDAGDYKVVATNELGS-ATHGARVTVDVEKVG 655
L++ E E D G Y+ VA N +G+ + + V V +VG
Sbjct: 164 -FLQI-ENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 12/169 (7%)
Query: 40 PEPDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKK-REEGVYTVVAKNREG 96
P P ++W NG+ + T V +SI+ I+ ++ R++ Y VA+N G
Sbjct: 34 PPPSIVWRKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDAPYECVAENGVG 89
Query: 97 EA-KMDIPVKVNTGKPEK---PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK 152
+A D + + G P I + I G + +++ + G P+P + W K+
Sbjct: 90 DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQT 149
Query: 153 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNV 200
+ L + +D+G+Y N GT S A NL V
Sbjct: 150 KVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV 198
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--ITSEKNTHTLTLI 293
P I+ + + G A G+P P + W K+GK + Q T + ++++
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 294 QCSTKDKGR----YSVKVTNKEGTVESA-ANLNVDQG---KAEF--IKKLDDLEVKEREN 343
+ GR Y N G SA A L + +G A F I + V E +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 344 AVLEV--EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
VL + + ++ W K+ ++ S K G L I N D+G+Y C
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQGKYEC 180
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
+ + L D V + L+ E+ S+ KW K+G ++ S ++ + +KG I KL+I N
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEI-SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIAN 67
Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELPPEISV 420
DEG+Y + PD V LP ++ V
Sbjct: 68 ALTEDEGDYVFA-PDAYN------VTLPAKVHV 93
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
+I PL D V+ ++ + E+++ + KW K+G + S+ + + G+ KL+I +
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISE-NIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIAN 67
Query: 477 AGLEDAGEY 485
A ED G+Y
Sbjct: 68 ALTEDEGDY 76
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
++WF +G I T + + K + +D GEYTC S +++ L
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKA----------NNNDSGEYTCQTGQTSLSDPVHLTVLSE 86
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKKQKLII 474
+ + ++ E K LVK ++++GK FS + I
Sbjct: 87 WLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS--------DPNFSI 138
Query: 475 FSAGLEDAGEYSC--RVGDTGDKESKATLTVEAPA 507
A +G+Y C +G T T+TV+APA
Sbjct: 139 PQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPA 173
>pdb|1N26|A Chain A, Crystal Structure Of The Extra-Cellular Domains Of Human
Interleukin-6 Receptor Alpha Chain
Length = 325
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 378 GTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPE---ISV----PLQDVKVSRD 430
G R+LL+R++ +HD G Y+C + +V++PPE +S PL +V
Sbjct: 57 GMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWG 116
Query: 431 EKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE----DAGEY- 485
+++ + TK LV+ +++ F E S + +K FS L D+ Y
Sbjct: 117 PRSTPSLT-TKAVLLVRKFQNSPAEDFQEPCQYSQESQK-----FSCQLAVPEGDSSFYI 170
Query: 486 --SCRVGDTGDKESK 498
C G K SK
Sbjct: 171 VSMCVASSVGSKFSK 185
>pdb|2E6Q|A Chain A, Solution Structure Of The Ig-Like Domain (615-713) From
Human Obscurin-Like Protein 1
Length = 112
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----------KVTI 374
G A + L+D++V + E+AV +++++ WF +G+E+K+++ + I
Sbjct: 7 GTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT-WFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 375 EKKGTIRKLLIRNISVHDEGEYT-CSLPDQETSAELNVVE 413
E+KG +L++ + D G S P + SA L + E
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTIQE 105
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+G PP F ++ +PV +E L+ ++ P P ++W G+ L ++ + F H
Sbjct: 11 QGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 70
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKN 93
+ + + + GVY A+N
Sbjct: 71 GLLLTAALPT----DAGVYVCRARN 91
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 445 LVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+V W K G+++A SE ++ DG + L++ +A DAG Y CR
Sbjct: 45 VVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
G G P F+ R V L V P P +VW + + L +S + DG
Sbjct: 9 GDQGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA 68
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L L A TDAG Y A N G A A VTV
Sbjct: 69 EHGLLLTAA-LPTDAGVYVCRARNAAGEAYAAAAVTV 104
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 163
+ G P P L V + G A L V GEP P V W K G+ + + ++
Sbjct: 10 DQGSP--PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTN 187
H L L D G Y + N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 285
+ G P P L V + G A L V GEP P V W K G+ + + ++
Sbjct: 10 DQGSP--PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTN 309
H L L D G Y + N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 31/206 (15%)
Query: 264 SPKVE--WYKDGKLIKDRQITSEKNTH------TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
SP++ W+K+ R + E+ T L L+ +D G Y N +
Sbjct: 52 SPRINLTWHKNDS---ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDK 108
Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEV-----EVTSDKADVK--WFKDGQEIKT 368
+ L V + F+ + ++ + + V E T DK DVK W+KD +
Sbjct: 109 MSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK 168
Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVV------------ELPP 416
+ + +GT LL+ ++++ D G Y C L + N+ E P
Sbjct: 169 DNEKFLSVRGTTH-LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIP 227
Query: 417 EISVPLQDVKVSRDEKASFEIELTKG 442
I PL+ + S + + ++ G
Sbjct: 228 VIISPLKTISASLGSRLTIPCKVFLG 253
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 392 DEGEYTCSLPD--------------QETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
D G Y C+ + + T A L + P +++ V V D E
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLS---EF 148
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
K D ++WYKD + LS+ G L++ LEDAG Y C
Sbjct: 149 TRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH-LLVHDVALEDAGYYRC 197
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIK 77
+ K VYA VTLE + P PD+ W EP+ T E+ S +++ I
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG--------AVLKIF 170
Query: 78 SIKKREEGVYTVVAKNREGEAK 99
+I+ +EG+Y A+N G+ K
Sbjct: 171 NIQLEDEGIYECEAENIRGKDK 192
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 46 WYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV------VAKNREGEA 98
W N P+ T D+ F Q++ + Y++ +++ ++G Y+ + K+ +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIA-----NVEASDKGNYSCFVSSPSITKSVFSKF 98
Query: 99 KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ 158
IP+ T KP I+ DV G++ L G P P + W K+++
Sbjct: 99 IPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRW---RKVLEPMP 155
Query: 159 ITSEKNTH--TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
T+E +T L + +D+G Y + N G + A + V
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 372 VTIEKKGTIRK----LLIRNISVHDEGEYTC--SLPDQETSAELNVVEL----------- 414
+T++K+ + + L I N+ D+G Y+C S P S + L
Sbjct: 53 ITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY 112
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
P +I V +DV + + E G+ + ++W K + + + ++ S L
Sbjct: 113 PADIVVQFKDVYALMGQNVTLEC-FALGNPVPDIRWRKVLEPMPSTAEISTS----GAVL 167
Query: 473 IIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
IF+ LED G Y C + G + +A + V+A
Sbjct: 168 KIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH- 288
T KP I+ DV G++ L G P P + W K+++ T+E +T
Sbjct: 108 TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRW---RKVLEPMPSTAEISTSG 164
Query: 289 -TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + +D+G Y + N G + A + V
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI----AFSENVTLSIDGKKQ 470
P I PL+D +V ++ +E+++ A V W K+G E+ +F DGK+
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
LI ED G Y T + +A L VE
Sbjct: 68 ILIFSDVVQEDRGRYQV---ITNGGQCEAELIVE 98
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 333 LDDLEVKERENAVLEVEVTSDKADVKWFKDGQEI----KTSKKVTIEKKGTIRKLLIRNI 388
L+D +V + + VEV+ + A V W K+G E+ + +K G L+ ++
Sbjct: 15 LEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74
Query: 389 SVHDEGEYTCSLPDQETSAELNVVE 413
D G Y + AEL V E
Sbjct: 75 VQEDRGRYQVITNGGQCEAELIVEE 99
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 9 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 61
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 62 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 103
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 260 GGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 37 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 96
Query: 316 SAANLNV 322
+L+V
Sbjct: 97 HTYHLDV 103
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 617
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 15 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 70
Query: 618 -LKEADSETDAGDYKVVATNELGSATH 643
+ E+ +D G+Y V NE GS H
Sbjct: 71 LIMESVVPSDKGNYTCVVENEYGSINH 97
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 357 VKWFKDGQEIKTSKKVT-IEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE----LNV 411
+ W K+G+E + ++ I+ + L++ ++ D G YTC + ++ S L+V
Sbjct: 155 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIEL-----TKGDALVKWYK----DGKEIA--FSEN 460
+E P + + ++ ++E + ++W K +G ++ +
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 461 VTL-------SIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFL 511
VT+ + D + + L + + EDAGEY+C G++ + V PA E L
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL 332
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 139 GEPSPKVEWYKDGKLIK-DRQITSEKNTH---TLTLIQCSTKDKGRYSVKVTNKEGTVES 194
G P+P + W K+G+ + + +I K H +L + D+G Y+ V NK G++
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 195 AANLNV 200
L+V
Sbjct: 209 TYTLDV 214
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK- 619
ER ++K V T+R +P PSI W +N + F GE+ I +K
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE----------FRGEHRIGGIKL 175
Query: 620 ---------EADSETDAGDYKVVATNELGS 640
E+ +D G+Y V N+ GS
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 5 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 57
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 58 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 36.2 bits (82), Expect = 0.074, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 260 GGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 33 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 92
Query: 316 SAANLNV 322
+L+V
Sbjct: 93 HTYHLDV 99
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 617
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 11 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 66
Query: 618 -LKEADSETDAGDYKVVATNELGSATH 643
+ E+ +D G+Y V NE GS H
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYGSINH 93
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKK-GTIRKL 383
+ I+ L+D++V+E +A ++ ++ V WF D + ++ I+ + G L
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVL 72
Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
+R +++ D G DQ SA L V E P S
Sbjct: 73 TLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFS 108
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKNTHTLTLI 171
I+E L DV + EG SA ++ V W+ D + ++ H LTL
Sbjct: 16 IIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLR 75
Query: 172 QCSTKDKG 179
Q + KD G
Sbjct: 76 QLALKDSG 83
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI----TSEKNTHTLTLI 293
I+E L DV + EG SA ++ V W+ D + ++ H LTL
Sbjct: 16 IIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLR 75
Query: 294 QCSTKDKG 301
Q + KD G
Sbjct: 76 QLALKDSG 83
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 33/165 (20%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDG---QEIKTSKK------VTIEK 376
+ I+ + V E+A+L VTS ++WF+ +E+ ++K VT
Sbjct: 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS 64
Query: 377 KGTIRKLL-----IRNISVHDEGEYTC-----SLPDQE----TSAELNVVELP--PEISV 420
+ T R+ + I NI+ D G Y C PD E EL+V P P +S
Sbjct: 65 ESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG 124
Query: 421 PLQDVKVSRDEKASFEIE---LTKGDALVKWYKDGKEIA-FSENV 461
P + + SF E + D +KW+K+G E++ F NV
Sbjct: 125 PA--ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNV 167
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-PLQETDEVVFSDQSDMHS 69
+PPT +PV AE VT +VR L W NG ET V ++ ++
Sbjct: 221 VPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYN 280
Query: 70 YVSIVTIKSIKKREE 84
++S + + R++
Sbjct: 281 WMSWLLVNVSAHRDD 295
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSSPKKREIFDGENII 615
AP FI E I + VK++P SI W R+ P ++ + G +I
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 616 LELKEADSETDAGDYKVVATNELGS 640
LE+ S+ D G Y ATN +G+
Sbjct: 160 LEIAPT-SDNDFGRYNCTATNHIGT 183
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 26 ENSEVTLEVRLVAVPEPDLLW--YYNGEPLQETDEVVFS--DQSDMHSYVSIVTIKSIKK 81
EN +VTL P P++ W +G E D+ + + H S+ IK +K
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL-HIKDVKL 72
Query: 82 REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP 141
+ G Y A +R G + + + + P + EG +S V P
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIEYA----PKFISNQTIYYSWEGNPINISCDVKSNP 128
Query: 142 SPKVEWYKDGKLIKDRQITSEKNTHT-----LTLIQCSTKDKGRYSVKVTNKEGT 191
+ W +D ++ + T+ K T L + S D GRY+ TN GT
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/216 (18%), Positives = 72/216 (33%), Gaps = 48/216 (22%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK----------DGKLIKDRQITSE 162
+P I++ L + + E L GEP P++ W + D L ++ +
Sbjct: 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXX 222
+ +L + D GRY + ++ G + + L+++
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA------------------- 100
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
P + EG +S V P + W +D ++ + T
Sbjct: 101 -------------PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT 147
Query: 283 SEKNTHT-----LTLIQCSTKDKGRYSVKVTNKEGT 313
+ K T L + S D GRY+ TN GT
Sbjct: 148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 103 PVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITS 161
P NT K EK LH ++ + GG P P + W K+GK K + +I
Sbjct: 10 PYWTNTEKMEKR-----LH--AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 62
Query: 162 EK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
K N H +L + DKG Y+ V N+ G++ +L+V
Sbjct: 63 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 104
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 260 GGEPSPKVEWYKDGKLIK-DRQITSEK--NTH-TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
GG P P + W K+GK K + +I K N H +L + DKG Y+ V N+ G++
Sbjct: 38 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 97
Query: 316 SAANLNV 322
+L+V
Sbjct: 98 HTYHLDV 104
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 563 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 617
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 16 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 71
Query: 618 -LKEADSETDAGDYKVVATNELGSATH 643
+ E+ +D G+Y V NE GS H
Sbjct: 72 LIMESVVPSDKGNYTCVVENEYGSINH 98
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSSPKKREIFDGENII 615
AP FI E I + VK++P SI W R+ P ++ + G +I
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 616 LELKEADSETDAGDYKVVATNELGS 640
LE+ S+ D G Y ATN +G+
Sbjct: 160 LEIAPT-SDNDFGRYNCTATNHIGT 183
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 26 ENSEVTLEVRLVAVPEPDLLW--YYNGEPLQETDEVVFS--DQSDMHSYVSIVTIKSIKK 81
EN +VTL P P++ W +G E D+ + + H S+ IK +K
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL-HIKDVKL 72
Query: 82 REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP 141
+ G Y A +R G + + + + P + EG +S V P
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIEYA----PKFISNQTIYYSWEGNPINISCDVKSNP 128
Query: 142 SPKVEWYKDGKLIKDRQITSEKNTHT-----LTLIQCSTKDKGRYSVKVTNKEGT 191
+ W +D ++ + T+ K T L + S D GRY+ TN GT
Sbjct: 129 PASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/216 (18%), Positives = 72/216 (33%), Gaps = 48/216 (22%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK----------DGKLIKDRQITSE 162
+P I++ L + + E L GEP P++ W + D L ++ +
Sbjct: 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDXXXXXXXXXXXXXXXXXXXXX 222
+ +L + D GRY + ++ G + + L+++
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA------------------- 100
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
P + EG +S V P + W +D ++ + T
Sbjct: 101 -------------PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT 147
Query: 283 SEKNTHT-----LTLIQCSTKDKGRYSVKVTNKEGT 313
+ K T L + S D GRY+ TN GT
Sbjct: 148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 445 LVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+V W K G+++A SE ++ DG + L++ +A DAG Y CR
Sbjct: 45 VVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+G PP F + +PV +E L+ ++ P P ++W G+ L ++ + F H
Sbjct: 11 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 70
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKN 93
+ + + + GVY A+N
Sbjct: 71 GLLLTAALPT----DAGVYVCRARN 91
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 163
+ G P P L V + G A L V GEP P V W K G+ + + ++
Sbjct: 10 DQGSP--PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTN 187
H L L D G Y + N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 285
+ G P P L V + G A L V GEP P V W K G+ + + ++
Sbjct: 10 DQGSP--PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTN 309
H L L D G Y + N
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 445 LVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+V W K G+++A SE ++ DG + L++ +A DAG Y CR
Sbjct: 44 VVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+G PP F + +PV +E L+ ++ P P ++W G+ L ++ + F H
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKN 93
+ + + + GVY A+N
Sbjct: 70 GLLLTAALPT----DAGVYVCRARN 90
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 103 PVKVNTG-KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--- 158
P+K ++G + P L V + G A L V GEP P V W K G+ + +
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS 61
Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
++ H L L D G Y + N
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARN 90
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEK 285
+ G P P L V + G A L V GEP P V W K G+ + + ++
Sbjct: 9 DQGSP--PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 66
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTN 309
H L L D G Y + N
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARN 90
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH------- 288
P I++ D++I+EG A L + P V+W L+ + + S + H
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKW-----LLPNGTVLSHASRHPRISVLN 60
Query: 289 --TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA 327
TL D G Y+ VTN G ++A LNV G +
Sbjct: 61 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH------- 166
P I++ D++I+EG A L + P V+W L+ + + S + H
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKW-----LLPNGTVLSHASRHPRISVLN 60
Query: 167 --TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
TL D G Y+ VTN G ++A LNV
Sbjct: 61 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDY 630
E + + +V A P+ +I WFR+ + L SS +I++ + DSE D G+Y
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 91
Query: 631 KVVATNELG 639
A N +G
Sbjct: 92 NCTAVNRIG 100
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK--NTHTLTLIQC---STKD 177
V EG ++ +V PS + W++DG+L+ ++ K NT + + ++ S D
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 178 KGRYSVKVTNKEG 190
G Y+ N+ G
Sbjct: 88 FGNYNCTAVNRIG 100
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK--NTHTLTLIQC---STKD 299
V EG ++ +V PS + W++DG+L+ ++ K NT + + ++ S D
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 300 KGRYSVKVTNKEG 312
G Y+ N+ G
Sbjct: 88 FGNYNCTAVNRIG 100
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY----VSIVTIK 77
VY E ++V + + A P + W+ +G+ L S+ S++ Y S + +
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS------SNYSNIKIYNTPSASYLEVT 81
Query: 78 SIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI--LEPLHDVS 124
+ + G Y A NR G+ ++ + V P PSI +EP +
Sbjct: 82 PDSENDFGNYNCTAVNRIGQESLEF-ILVQADTPSSPSIDQVEPYSSTA 129
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 24/155 (15%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
++WF +G I T + + K + +D GEYTC S +++ L
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKA----------NNNDSGEYTCQTGQTSLSDPVHLTVLSE 86
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSE-NVTLSIDGKKQKLI 473
+ + ++ E K LVK ++++GK FS + T SI
Sbjct: 87 WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIP------- 139
Query: 474 IFSAGLEDAGEYSC--RVGDTGDKESKATLTVEAP 506
A +G+Y C +G T T+TV+ P
Sbjct: 140 --QANHSHSGDYHCTGNIGYTLFSSKPVTITVQVP 172
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 24/198 (12%)
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
K + W+KD + S + KL V D G Y C + + + +
Sbjct: 32 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 91
Query: 412 --VELPPEISVPLQDVKVSRDEKAS--------FEIELTKGDAL--VKWYKDGKEIAFSE 459
VE P + Q + + A E + + L ++WYKD K + +
Sbjct: 92 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-D 150
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLT---KLPS 516
N+ S G K +LI+ + + G Y+C T + V +EF+T P+
Sbjct: 151 NIHFS--GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV----IEFITLEENKPT 204
Query: 517 VTLVPHLGDATFQVELSS 534
++ + T +V+L S
Sbjct: 205 RPVIVSPANETMEVDLGS 222
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 24/198 (12%)
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
K + W+KD + S + KL V D G Y C + + + +
Sbjct: 37 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 96
Query: 412 --VELPPEISVPLQDVKVSRDEKAS--------FEIELTKGDAL--VKWYKDGKEIAFSE 459
VE P + Q + + A E + + L ++WYKD K + +
Sbjct: 97 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-D 155
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLT---KLPS 516
N+ S G K +LI+ + + G Y+C T + V +EF+T P+
Sbjct: 156 NIHFS--GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV----IEFITLEENKPT 209
Query: 517 VTLVPHLGDATFQVELSS 534
++ + T +V+L S
Sbjct: 210 RPVIVSPANETMEVDLGS 227
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 24/198 (12%)
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
K + W+KD + S + KL V D G Y C + + + +
Sbjct: 35 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
Query: 412 --VELPPEISVPLQDVKVSRDEKAS--------FEIELTKGDAL--VKWYKDGKEIAFSE 459
VE P + Q + + A E + + L ++WYKD K + +
Sbjct: 95 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-D 153
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLT---KLPS 516
N+ S G K +LI+ + + G Y+C T + V +EF+T P+
Sbjct: 154 NIHFS--GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV----IEFITLEENKPT 207
Query: 517 VTLVPHLGDATFQVELSS 534
++ + T +V+L S
Sbjct: 208 RPVIVSPANETMEVDLGS 225
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 24/198 (12%)
Query: 354 KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV-- 411
K + W+KD + S + KL V D G Y C + + + +
Sbjct: 35 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
Query: 412 --VELPPEISVPLQDVKVSRDEKAS--------FEIELTKGDAL--VKWYKDGKEIAFSE 459
VE P + Q + + A E + + L ++WYKD K + +
Sbjct: 95 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-D 153
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLT---KLPS 516
N+ S G K +LI+ + + G Y+C T + V +EF+T P+
Sbjct: 154 NIHFS--GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV----IEFITLEENKPT 207
Query: 517 VTLVPHLGDATFQVELSS 534
++ + T +V+L S
Sbjct: 208 RPVIVSPANETMEVDLGS 225
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHS-YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
P+P L W+YNG L E+ + H+ Y + + + G YT++AKN G+
Sbjct: 29 PKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD 88
Query: 99 KMDI 102
+ I
Sbjct: 89 EKQI 92
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 35.8 bits (81), Expect = 0.092, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHS-YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
P+P L W+YNG L E+ + H+ Y + + + G YT++AKN G+
Sbjct: 29 PKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD 88
Query: 99 KMDI 102
+ I
Sbjct: 89 EKQI 92
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 343 NAVLEVEVTSDKADV-KWFKDGQEI-KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC-- 398
A+L+ + T D V W K+G + TI+++GT++ I+N+ + D G YTC
Sbjct: 25 TALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ---IKNLRISDTGTYTCVA 81
Query: 399 --SLPDQETSAELNVVE 413
S + SA L+V E
Sbjct: 82 TSSSGETSWSAVLDVTE 98
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE-KNT 165
++G P IL+ + ++ +A+L + G+P P + W K+G R + +
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
TL + D G Y+ T+ G +A L+V
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE-KNT 287
++G P IL+ + ++ +A+L + G+P P + W K+G R + +
Sbjct: 2 SSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ 61
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
TL + D G Y+ T+ G +A L+V
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 46 WYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105
W ++ + L ET+ V + + S I T++ +K +EGVYTV KN GE ++++ VK
Sbjct: 80 WVFDKKLLCETEGRVRVETTKDRS---IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Query: 106 V 106
V
Sbjct: 137 V 137
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH------- 166
P I++ D++I+EG A L + P V+W L+ + + S + H
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKW-----LLPNGTVLSHASRHPRISVLN 405
Query: 167 --TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
TL D G Y+ VTN G ++A LNV
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 16/97 (16%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH------- 288
P I++ D++I+EG A L + P V+W L+ + + S + H
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKW-----LLPNGTVLSHASRHPRISVLN 405
Query: 289 --TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
TL D G Y+ VTN G ++A LNV
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 446 VKWYKDGKEIAFSENV-TLSIDGKKQKLIIF----SAGLEDAGEYSCRVGDTGDKESKAT 500
++W KDG A +N+ L I +Q I F S DAG Y C+V D G+ E
Sbjct: 34 IQWVKDG---AVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90
Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
+ + V F T P VP +A FQ+
Sbjct: 91 VWLTVEGVPFFTVEPKDLAVPP--NAPFQL 118
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG 85
+ V L + EPD+ W +G +Q D+ ++ S+ H ++ +++KS+++ + G
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQ-LYIPVSEQH-WIGFLSLKSVERSDAG 73
Query: 86 VYTVVAKNREGEAKMDIPVKVNT-GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP- 143
Y ++ GE ++ PV + G P +EP D+++ LS + G P P
Sbjct: 74 RYWCQVEDG-GETEISQPVWLTVEGVPF--FTVEP-KDLAVPPNAPFQLSCEAVGPPEPV 129
Query: 144 KVEWYK 149
+ W++
Sbjct: 130 TIVWWR 135
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTKD 299
+++++G+ L+ V G P ++W KDG ++++ ++ + L+L D
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 300 KGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADV 357
GRY +V + T S +G F + DL V L E + +
Sbjct: 72 AGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI 131
Query: 358 KWFKDGQEI 366
W++ +I
Sbjct: 132 VWWRGTTKI 140
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTKD 177
+++++G+ L+ V G P ++W KDG ++++ ++ + L+L D
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 178 KGRYSVKV 185
GRY +V
Sbjct: 72 AGRYWCQV 79
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLT 169
P I+EP D+++TEG +A L + + V W + + + TL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTSLT-SVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ +D G Y+ V+N G ++A LNV
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEK----NTHTLT 291
P I+EP D+++TEG +A L + + V W + + + TL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTSLT-SVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ +D G Y+ V+N G ++A LNV
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTIRKLLIRNISV 390
DL V E A L+ ++ V W + T ++ + GT+ N++V
Sbjct: 350 DLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN---FTNVTV 406
Query: 391 HDEGEYTC----SLPDQETSAELNV 411
D G YTC S+ + SA LNV
Sbjct: 407 QDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
++ V E T++ + + P P+I+W K L+S+ + + LE++ A +
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ- 451
Query: 626 DAGDYKVVATNELGSATHGARVTV 649
D G Y +A N G+ + A + V
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHV 475
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 125 ITEGESAVLSVQVGGEPSPK-VEWYK-DG-KLIKDRQ----ITSEKNTHTLTLIQCSTKD 177
I+ GES QV G+ K + W+ +G KL ++Q + ++ ++ TLT+ + D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
G Y VT ++GT +S A +NV
Sbjct: 74 AGIYKCVVTAEDGT-QSEATVNV 95
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 247 ITEGESAVLSVQVGGEPSPK-VEWYK-DG-KLIKDRQ----ITSEKNTHTLTLIQCSTKD 299
I+ GES QV G+ K + W+ +G KL ++Q + ++ ++ TLT+ + D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 300 KGRYSVKVTNKEGTVESAANLNV 322
G Y VT ++GT +S A +NV
Sbjct: 74 AGIYKCVVTAEDGT-QSEATVNV 95
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
L ++ + V DEG YTC + Q+ + +++ S P ++ ++D + + +T
Sbjct: 74 LRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCS 133
Query: 443 ------DALVKWYKDGKEIAFSENVTLSIDGKKQKLI----IFSAGLEDAGEYSCRV 489
+A V W KDG+ + + NVT S ++ L + L G YSC V
Sbjct: 134 SYQGYPEAEVFW-KDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLV 189
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKK-----QKLIIFSAGLEDAGEYSCRV 489
+ WYK+ +E L IDG K Q LII + LED+G Y C V
Sbjct: 161 ITWYKNNQE--------LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTL 170
P I++ D + GES L +V G W K K I++ + + + +N LT+
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + G Y++ V NK G+ ++ NL V
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTL 292
P I++ D + GES L +V G W K K I++ + + + +N LT+
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + G Y++ V NK G+ ++ NL V
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
++WF +G I T + + K + +D GEYTC S +++ L
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKA----------NNNDSGEYTCQTGQTSLSDPVHLTVLSE 86
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSE-NVTLSIDGKKQKLI 473
+ + ++ E K LVK ++++GK FS + T SI
Sbjct: 87 WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIP------- 139
Query: 474 IFSAGLEDAGEYSC--RVGDTGDKESKATLTVE 504
A +G+Y C +G T T+TV+
Sbjct: 140 --QANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 10/110 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP +P E E +E + P P L W +NG+PL+E+ + +
Sbjct: 8 PPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDI-------PVKVNTGKPEKP 114
+ G YT++AKN G A I P V+ P P
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPP 114
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE---LKEADSETDAGDYKVVATNEL 638
V+ +P P++ W N +PL S + E I E L + + G+Y ++A N L
Sbjct: 29 VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPL 88
Query: 639 GSATH 643
G+A
Sbjct: 89 GTANQ 93
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 335 DLEVKERENAVLEVEV-TSDKADVKW---------FKDGQEIKTSKKVTIEKKGTIRKLL 384
++ V E A+L V +D ++W F D + ++ ++ + +
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 385 IRNISVHDEGEYTCSL---PDQETSAELNVVELP 415
+ ++S+ DEG+YTCSL P + + A L V+ +P
Sbjct: 75 VSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY---KDGKLIKDRQITSEKNTHTLT 169
KP IL + I G + L V G P P W L + + ++ +T ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 170 LIQCSTKDKGRYSVKVTNKEG 190
D G Y +KV N+ G
Sbjct: 62 FPSAKRADSGNYKLKVKNELG 82
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY---KDGKLIKDRQITSEKNTHTLT 291
KP IL + I G + L V G P P W L + + ++ +T ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 292 LIQCSTKDKGRYSVKVTNKEG 312
D G Y +KV N+ G
Sbjct: 62 FPSAKRADSGNYKLKVKNELG 82
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 76 IKSIKKREEGVYTVVAKNREG-EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLS 134
+ ++ ++EG++ A NR G E K + V+V P KP I++ +++
Sbjct: 436 LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQ-IPGKPEIVDSASELTAGVPNKVGTC 494
Query: 135 VQVGGEPSPKVEWYKDGK 152
V G P+ + W+ DGK
Sbjct: 495 VSEGSYPAGTLSWHLDGK 512
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSP 603
P F+E E++TV L + + P P ++W ++ PL ++P
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP 152
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 151
++G E ++EP ++ G + L+ +V +PSP++ W KDG
Sbjct: 5 SSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG 48
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 273
++G E ++EP ++ G + L+ +V +PSP++ W KDG
Sbjct: 5 SSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG 48
>pdb|1Z2K|A Chain A, Nmr Structure Of The D1 Domain Of The Natural Killer Cell
Receptor, 2b4
Length = 109
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 445 LVKWYKDG---KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDK 495
++ WY DG ++FS+ D L I SA L+D+G Y + +TG K
Sbjct: 46 ILNWYNDGPSWSNVSFSD--IYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGK 97
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 715 EVRFKALPPPKAEWTVNGTVIV-----PSKRVKGKA--EFIKK--LDDLEVKERE 760
E R ++ P+ EW +GTV++ SKRV A EF KK L+++EV RE
Sbjct: 501 EFRHSSMIKPEVEWQADGTVLLTMFLPTSKRVAEFAAIEFAKKMNLEEVEVINRE 555
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 76 IKSIKKREEGVYTVVAKNREG-EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLS 134
+ ++ ++EG++ A NR G E K + V+V P KP I++ +++
Sbjct: 68 LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQ-IPGKPEIVDSASELTAGVPNKVGTC 126
Query: 135 VQVGGEPSPKVEWYKDGK 152
V G P+ + W+ DGK
Sbjct: 127 VSEGSYPAGTLSWHLDGK 144
>pdb|2PTT|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTU|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|C Chain C, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|D Chain D, Structure Of Nk Cell Receptor 2b4 (Cd244)
Length = 112
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 445 LVKWYKDG---KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDK 495
++ WY DG ++FS+ D L I SA L+D+G Y + +TG K
Sbjct: 49 ILNWYNDGPSWSNVSFSD--IYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGK 100
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 457 FSENVTLSIDGKKQKL---IIFSAGLEDAGEYSCRVGDTGDKESK-ATLTVEAPAVEFLT 512
++ + L I G Q L +I L DAG+Y C+ GD + K A L V P E +
Sbjct: 169 YTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY 228
Query: 513 K--LPSVTLVPHLG 524
+ SVT LG
Sbjct: 229 EDLRGSVTFHCALG 242
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 76 IKSIKKREEGVYTVVAKNREG-EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLS 134
+ ++ ++EG++ A NR G E K + V+V P KP I++ +++
Sbjct: 65 LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQ-IPGKPEIVDSASELTAGVPNKVGTC 123
Query: 135 VQVGGEPSPKVEWYKDGK 152
V G P+ + W+ DGK
Sbjct: 124 VSEGSYPAGTLSWHLDGK 141
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI----VTIKSIKKREEGVYTVVAKNRE 95
P P L W +NG L ET +F++ + + ++ + + G YT++A N
Sbjct: 28 PAPSLRWLFNGSVLNET-SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86
Query: 96 GEAK-------MDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
G+A MD P + N PE +P+ D + T G+
Sbjct: 87 GQASASIMAAFMDNPFEFN---PE-----DPIPDTNSTSGD 119
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 385 IRNISVHDEGEYTCSL 400
I N+++ DEGEYTCS+
Sbjct: 107 ISNVALADEGEYTCSI 122
>pdb|2QO4|A Chain A, Crystal Structure Of Zebrafish Liver Bile Acid-Binding
Protein Complexed With Cholic Acid
Length = 126
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENV----- 461
A+ N E IS+P + +K+++D K EI+ D + GK + S +
Sbjct: 11 AQENYEEFLRAISLPEEVIKLAKDVKPVTEIQQNGSDFTITSKTPGKTVTNSFTIGKEAE 70
Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCR 488
++DGKK K I+ D G+ CR
Sbjct: 71 ITTMDGKKLKCIV----KLDGGKLVCR 93
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDG 151
++ G + L+ +V +PSP++ W KDG
Sbjct: 14 AVAPGGTVTLTCEVPAQPSPQIHWMKDG 41
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDG 273
++ G + L+ +V +PSP++ W KDG
Sbjct: 14 AVAPGGTVTLTCEVPAQPSPQIHWMKDG 41
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635
+ L+ + P P +VW + PL +S D + + + A S D+G+Y++
Sbjct: 42 LNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARS--DSGEYELSVQ 99
Query: 636 NELGSATHGARVTVDVEKVG 655
E T R+ V VEK G
Sbjct: 100 IENMKDTATIRIRV-VEKAG 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,485,134
Number of Sequences: 62578
Number of extensions: 967190
Number of successful extensions: 3889
Number of sequences better than 100.0: 222
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 2718
Number of HSP's gapped (non-prelim): 960
length of query: 785
length of database: 14,973,337
effective HSP length: 107
effective length of query: 678
effective length of database: 8,277,491
effective search space: 5612138898
effective search space used: 5612138898
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)