Query psy2775
Match_columns 785
No_of_seqs 366 out of 3353
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 16:33:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.6E-59 3.6E-64 503.5 54.5 549 13-659 40-621 (1051)
2 KOG3513|consensus 100.0 2.3E-56 4.9E-61 479.4 47.6 502 130-769 59-597 (1051)
3 KOG4221|consensus 100.0 1E-42 2.2E-47 371.1 40.9 546 3-652 32-611 (1381)
4 KOG4222|consensus 100.0 1.2E-42 2.6E-47 368.4 26.4 457 5-507 24-512 (1281)
5 KOG4221|consensus 100.0 7.3E-39 1.6E-43 341.8 37.5 524 126-780 52-613 (1381)
6 KOG4222|consensus 100.0 1.6E-40 3.5E-45 352.3 24.0 445 234-777 30-502 (1281)
7 KOG4194|consensus 100.0 1.3E-30 2.8E-35 259.3 23.4 306 10-351 501-824 (873)
8 KOG4194|consensus 100.0 2.9E-29 6.3E-34 249.8 18.9 266 415-778 503-792 (873)
9 KOG3515|consensus 100.0 5.3E-28 1.1E-32 254.7 25.9 595 7-740 2-640 (741)
10 PHA02785 IL-beta-binding prote 100.0 4.2E-26 9.2E-31 230.7 29.1 254 19-315 33-319 (326)
11 PHA02785 IL-beta-binding prote 99.9 1.7E-24 3.7E-29 219.0 27.7 242 244-493 35-315 (326)
12 KOG3515|consensus 99.9 1.5E-24 3.2E-29 228.9 22.0 496 112-735 6-538 (741)
13 PHA02826 IL-1 receptor-like pr 99.8 3.5E-19 7.7E-24 168.0 18.8 157 423-640 30-213 (227)
14 PHA02826 IL-1 receptor-like pr 99.8 1.7E-19 3.7E-24 170.2 14.1 156 565-770 29-209 (227)
15 cd05762 Ig8_MLCK Eighth immuno 99.8 5.5E-18 1.2E-22 138.2 13.4 91 559-650 1-91 (98)
16 cd05851 Ig3_Contactin-1 Third 99.7 1.1E-16 2.4E-21 128.0 10.3 88 558-650 1-88 (88)
17 cd05762 Ig8_MLCK Eighth immuno 99.7 5E-16 1.1E-20 126.7 13.8 92 13-108 1-92 (98)
18 cd05747 Ig5_Titin_like M5, fif 99.7 3.2E-16 7E-21 127.1 11.9 89 558-647 3-91 (92)
19 cd04975 Ig4_SCFR_like Fourth i 99.7 4.8E-16 1.1E-20 126.6 11.7 84 566-650 11-100 (101)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 8.4E-16 1.8E-20 122.0 12.3 82 567-649 4-86 (86)
21 PF07679 I-set: Immunoglobulin 99.7 9.1E-16 2E-20 124.8 12.8 90 559-649 1-90 (90)
22 cd05737 Ig_Myomesin_like_C C-t 99.7 1.1E-15 2.3E-20 123.9 11.5 83 566-649 9-92 (92)
23 cd05892 Ig_Myotilin_C C-termin 99.7 8.1E-16 1.8E-20 117.7 9.8 73 576-649 1-75 (75)
24 cd05851 Ig3_Contactin-1 Third 99.6 1.7E-15 3.7E-20 121.1 10.7 87 12-106 1-87 (88)
25 cd04972 Ig_TrkABC_d4 Fourth do 99.6 2.6E-15 5.7E-20 121.2 11.7 87 562-649 4-90 (90)
26 cd05852 Ig5_Contactin-1 Fifth 99.6 1.4E-15 3.1E-20 116.1 9.1 73 573-649 1-73 (73)
27 cd05893 Ig_Palladin_C C-termin 99.6 1.8E-15 4E-20 116.0 9.3 73 576-649 1-75 (75)
28 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.9E-15 6.2E-20 122.4 10.8 83 567-650 12-100 (101)
29 cd05745 Ig3_Peroxidasin Third 99.6 1.7E-15 3.6E-20 117.1 8.7 74 572-649 1-74 (74)
30 cd05748 Ig_Titin_like Immunogl 99.6 4.7E-15 1E-19 114.9 10.8 74 575-649 1-74 (74)
31 cd05865 Ig1_NCAM-1 First immun 99.6 8.3E-15 1.8E-19 118.4 11.7 85 564-649 6-95 (96)
32 cd05863 Ig2_VEGFR-3 Second imm 99.6 3E-15 6.5E-20 110.9 8.2 66 576-650 1-66 (67)
33 cd05870 Ig5_NCAM-2 Fifth immun 99.6 8.1E-15 1.8E-19 120.4 11.5 90 558-649 2-98 (98)
34 cd05743 Ig_Perlecan_D2_like Im 99.6 7.7E-15 1.7E-19 114.6 10.4 77 573-650 1-77 (78)
35 cd05747 Ig5_Titin_like M5, fif 99.6 1.9E-14 4E-19 116.8 12.9 90 11-104 2-91 (92)
36 cd04968 Ig3_Contactin_like Thi 99.6 6.8E-15 1.5E-19 118.4 10.2 88 558-650 1-88 (88)
37 cd05728 Ig4_Contactin-2-like F 99.6 5.3E-15 1.2E-19 117.7 9.4 84 561-649 2-85 (85)
38 cd05866 Ig1_NCAM-2 First immun 99.6 1.9E-14 4.1E-19 114.9 12.4 86 562-649 4-91 (92)
39 cd05730 Ig3_NCAM-1_like Third 99.6 1.2E-14 2.6E-19 119.0 11.2 83 566-650 11-93 (95)
40 cd05744 Ig_Myotilin_C_like Imm 99.6 1.1E-14 2.4E-19 112.3 10.4 73 576-649 1-75 (75)
41 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.6E-14 3.6E-19 118.3 11.8 90 559-649 3-97 (97)
42 PF07679 I-set: Immunoglobulin 99.6 2.6E-14 5.7E-19 116.1 13.0 90 13-106 1-90 (90)
43 cd05868 Ig4_NrCAM Fourth immun 99.6 1.1E-14 2.5E-19 112.7 10.1 74 573-649 1-75 (76)
44 cd05735 Ig8_DSCAM Eight immuno 99.6 2.4E-14 5.2E-19 114.3 12.0 77 573-650 1-82 (88)
45 cd05723 Ig4_Neogenin Fourth im 99.6 1.6E-14 3.4E-19 110.4 10.2 71 575-649 1-71 (71)
46 cd04975 Ig4_SCFR_like Fourth i 99.6 3.7E-14 8E-19 115.5 12.4 89 19-107 10-100 (101)
47 cd05867 Ig4_L1-CAM_like Fourth 99.6 2.4E-14 5.2E-19 111.3 10.7 74 573-649 1-75 (76)
48 cd05857 Ig2_FGFR Second immuno 99.6 2.7E-14 5.8E-19 114.4 11.0 81 568-649 4-85 (85)
49 cd05732 Ig5_NCAM-1_like Fifth 99.6 2.5E-14 5.3E-19 117.7 11.0 89 559-649 3-96 (96)
50 cd05891 Ig_M-protein_C C-termi 99.6 4.4E-14 9.6E-19 114.0 11.2 83 566-649 9-92 (92)
51 cd05760 Ig2_PTK7 Second immuno 99.6 3.8E-14 8.2E-19 110.2 10.4 75 576-652 1-75 (77)
52 cd07693 Ig1_Robo First immunog 99.5 5.4E-14 1.2E-18 117.1 11.7 91 558-649 1-99 (100)
53 cd05855 Ig_TrkB_d5 Fifth domai 99.5 4E-14 8.7E-19 108.4 9.8 71 577-648 2-77 (79)
54 cd04978 Ig4_L1-NrCAM_like Four 99.5 3.6E-14 7.8E-19 110.9 9.8 75 573-649 1-75 (76)
55 cd05737 Ig_Myomesin_like_C C-t 99.5 8.9E-14 1.9E-18 112.7 12.2 87 17-106 6-92 (92)
56 cd04969 Ig5_Contactin_like Fif 99.5 3.8E-14 8.2E-19 109.3 9.4 73 573-649 1-73 (73)
57 cd05848 Ig1_Contactin-5 First 99.5 8.2E-14 1.8E-18 112.9 11.8 82 559-643 2-87 (94)
58 cd05864 Ig2_VEGFR-2 Second imm 99.5 2.4E-14 5.3E-19 107.7 7.9 69 576-650 1-69 (70)
59 cd05850 Ig1_Contactin-2 First 99.5 1.2E-13 2.5E-18 112.1 12.3 83 559-643 2-87 (94)
60 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 6.7E-14 1.5E-18 109.1 10.3 71 577-648 2-79 (81)
61 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.6E-13 3.4E-18 108.9 12.5 83 20-106 3-86 (86)
62 cd05728 Ig4_Contactin-2-like F 99.5 8.9E-14 1.9E-18 110.6 10.6 84 15-106 2-85 (85)
63 cd04976 Ig2_VEGFR Second immun 99.5 5E-14 1.1E-18 107.3 8.7 70 576-650 1-70 (71)
64 cd05735 Ig8_DSCAM Eight immuno 99.5 2.4E-13 5.2E-18 108.5 13.0 82 27-108 1-83 (88)
65 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 8E-14 1.7E-18 105.2 9.5 68 573-647 1-68 (69)
66 cd05849 Ig1_Contactin-1 First 99.5 1.4E-13 3.1E-18 110.9 11.3 82 559-643 2-86 (93)
67 cd05876 Ig3_L1-CAM Third immun 99.5 5.2E-14 1.1E-18 107.5 8.2 70 576-649 1-70 (71)
68 cd05854 Ig6_Contactin-2 Sixth 99.5 1.7E-13 3.8E-18 108.4 11.4 76 574-650 1-82 (85)
69 cd04968 Ig3_Contactin_like Thi 99.5 1.8E-13 3.9E-18 110.1 11.7 87 12-106 1-87 (88)
70 cd05730 Ig3_NCAM-1_like Third 99.5 1.8E-13 3.9E-18 112.0 11.8 90 12-107 1-93 (95)
71 cd05865 Ig1_NCAM-1 First immun 99.5 2.8E-13 6E-18 109.5 12.1 88 16-106 4-95 (96)
72 cd05740 Ig_CEACAM_D4 Fourth im 99.5 1.4E-13 3.1E-18 110.3 10.4 79 566-649 11-90 (91)
73 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.7E-13 8.1E-18 108.6 12.5 88 15-106 3-90 (90)
74 cd05852 Ig5_Contactin-1 Fifth 99.5 1.3E-13 2.8E-18 105.3 9.2 73 27-106 1-73 (73)
75 cd05746 Ig4_Peroxidasin Fourth 99.5 7.7E-14 1.7E-18 106.0 7.9 68 576-647 1-68 (69)
76 cd05859 Ig4_PDGFR-alpha Fourth 99.5 3.5E-13 7.5E-18 110.1 12.2 87 21-107 12-100 (101)
77 cd05892 Ig_Myotilin_C C-termin 99.5 2.9E-13 6.2E-18 103.6 10.8 74 30-106 1-75 (75)
78 cd05870 Ig5_NCAM-2 Fifth immun 99.5 2.9E-13 6.2E-18 111.2 11.3 90 12-106 2-98 (98)
79 cd05745 Ig3_Peroxidasin Third 99.5 1.6E-13 3.4E-18 106.0 9.1 74 26-106 1-74 (74)
80 cd05891 Ig_M-protein_C C-termi 99.5 6E-13 1.3E-17 107.4 12.4 87 17-106 6-92 (92)
81 cd05749 Ig2_Tyro3_like Second 99.5 1.5E-13 3.2E-18 106.8 8.4 73 562-643 2-75 (81)
82 cd05736 Ig2_Follistatin_like S 99.5 2.5E-13 5.4E-18 105.8 9.7 74 576-650 1-74 (76)
83 cd05763 Ig_1 Subgroup of the i 99.5 1.7E-13 3.6E-18 106.4 8.6 73 576-649 1-74 (75)
84 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.4E-13 9.5E-18 110.1 11.4 89 558-647 2-97 (98)
85 cd05773 Ig8_hNephrin_like Eigh 99.5 5.4E-13 1.2E-17 111.3 12.0 79 572-650 22-105 (109)
86 cd05869 Ig5_NCAM-1 Fifth immun 99.5 5.9E-13 1.3E-17 109.1 12.1 91 12-106 2-97 (97)
87 cd05726 Ig4_Robo Fhird immunog 99.5 2.6E-13 5.7E-18 109.5 9.8 76 573-652 1-84 (90)
88 cd04973 Ig1_FGFR First immunog 99.5 2.4E-13 5.2E-18 106.3 9.1 78 566-649 2-79 (79)
89 cd04974 Ig3_FGFR Third immunog 99.5 1.9E-13 4E-18 110.1 8.4 76 573-649 1-89 (90)
90 cd05853 Ig6_Contactin-4 Sixth 99.5 3.5E-13 7.7E-18 104.9 9.5 77 574-651 1-83 (85)
91 cd05866 Ig1_NCAM-2 First immun 99.5 1E-12 2.2E-17 104.9 12.2 86 16-106 4-91 (92)
92 cd04970 Ig6_Contactin_like Six 99.5 5.6E-13 1.2E-17 106.3 10.5 76 574-650 1-82 (85)
93 cd07693 Ig1_Robo First immunog 99.5 9.7E-13 2.1E-17 109.5 12.4 94 12-106 1-99 (100)
94 cd05731 Ig3_L1-CAM_like Third 99.5 2.5E-13 5.5E-18 104.5 8.1 70 576-649 1-70 (71)
95 cd05725 Ig3_Robo Third immunog 99.5 2.3E-13 5E-18 103.6 7.7 69 576-649 1-69 (69)
96 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 3.9E-13 8.5E-18 103.6 8.9 72 576-649 1-73 (74)
97 cd05858 Ig3_FGFR-2 Third immun 99.4 4.9E-13 1.1E-17 107.8 9.7 76 573-649 1-89 (90)
98 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.5E-12 3.2E-17 107.0 12.6 93 11-104 1-97 (98)
99 cd05723 Ig4_Neogenin Fourth im 99.4 1.1E-12 2.4E-17 100.1 11.0 71 29-106 1-71 (71)
100 cd04977 Ig1_NCAM-1_like First 99.4 1.2E-12 2.5E-17 105.7 11.6 83 564-648 6-91 (92)
101 cd05732 Ig5_NCAM-1_like Fifth 99.4 9.4E-13 2E-17 108.2 11.3 90 12-106 2-96 (96)
102 cd05893 Ig_Palladin_C C-termin 99.4 9.4E-13 2E-17 101.0 10.4 74 30-106 1-75 (75)
103 cd05848 Ig1_Contactin-5 First 99.4 1.5E-12 3.2E-17 105.5 12.1 83 12-100 1-87 (94)
104 cd05722 Ig1_Neogenin First imm 99.4 7E-13 1.5E-17 108.3 10.1 86 561-649 2-95 (95)
105 cd05856 Ig2_FGFRL1-like Second 99.4 6E-13 1.3E-17 105.9 9.5 79 568-649 4-82 (82)
106 cd05773 Ig8_hNephrin_like Eigh 99.4 1.9E-12 4.1E-17 108.0 12.8 98 10-107 2-105 (109)
107 cd05764 Ig_2 Subgroup of the i 99.4 7.6E-13 1.7E-17 102.5 9.6 73 573-649 1-74 (74)
108 cd05863 Ig2_VEGFR-3 Second imm 99.4 6.9E-13 1.5E-17 98.3 8.9 66 30-107 1-66 (67)
109 cd05724 Ig2_Robo Second immuno 99.4 8.2E-13 1.8E-17 106.1 9.6 80 566-648 4-85 (86)
110 cd07702 Ig2_VEGFR-1 Second imm 99.4 8E-13 1.7E-17 99.5 8.7 70 576-649 1-70 (72)
111 cd05750 Ig_Pro_neuregulin Immu 99.4 6.8E-13 1.5E-17 103.4 8.7 70 576-646 1-74 (75)
112 cd05748 Ig_Titin_like Immunogl 99.4 2.5E-12 5.3E-17 99.6 11.3 74 29-106 1-74 (74)
113 cd05867 Ig4_L1-CAM_like Fourth 99.4 2E-12 4.4E-17 100.4 10.9 74 27-106 1-75 (76)
114 cd04973 Ig1_FGFR First immunog 99.4 1.2E-12 2.6E-17 102.3 9.5 79 19-106 1-79 (79)
115 cd05756 Ig1_IL1R_like First im 99.4 6.5E-13 1.4E-17 107.0 8.1 80 567-649 8-94 (94)
116 cd05850 Ig1_Contactin-2 First 99.4 4E-12 8.6E-17 103.1 12.7 83 12-100 1-87 (94)
117 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.2E-12 2.6E-17 101.3 9.1 68 576-643 1-71 (77)
118 cd05740 Ig_CEACAM_D4 Fourth im 99.4 2.4E-12 5.3E-17 103.2 11.1 87 12-106 1-90 (91)
119 cd05875 Ig6_hNeurofascin_like 99.4 1.1E-12 2.4E-17 101.5 8.7 69 576-644 1-72 (77)
120 cd05765 Ig_3 Subgroup of the i 99.4 1E-12 2.2E-17 104.1 8.8 76 573-649 1-81 (81)
121 cd05733 Ig6_L1-CAM_like Sixth 99.4 8.1E-13 1.8E-17 102.7 7.8 68 576-643 1-71 (77)
122 cd05868 Ig4_NrCAM Fourth immun 99.4 2.1E-12 4.6E-17 99.9 10.1 74 27-106 1-75 (76)
123 cd05743 Ig_Perlecan_D2_like Im 99.4 3.5E-12 7.5E-17 99.6 11.3 76 27-106 1-76 (78)
124 cd04969 Ig5_Contactin_like Fif 99.4 2.3E-12 4.9E-17 99.3 9.9 73 27-106 1-73 (73)
125 cd05744 Ig_Myotilin_C_like Imm 99.4 3.7E-12 8.1E-17 98.2 11.0 74 30-106 1-75 (75)
126 cd05855 Ig_TrkB_d5 Fifth domai 99.4 3.1E-12 6.7E-17 98.1 10.3 74 32-105 3-77 (79)
127 cd05849 Ig1_Contactin-1 First 99.4 4.5E-12 9.7E-17 102.1 11.7 81 12-100 1-86 (93)
128 cd04977 Ig1_NCAM-1_like First 99.4 6.1E-12 1.3E-16 101.5 11.8 87 15-105 3-91 (92)
129 cd05857 Ig2_FGFR Second immuno 99.4 5.9E-12 1.3E-16 100.7 11.5 82 21-106 3-85 (85)
130 cd04967 Ig1_Contactin First Ig 99.4 4.5E-12 9.8E-17 102.5 10.8 83 559-643 2-87 (91)
131 cd05771 IgC_Tapasin_R Tapasin- 99.4 5.4E-12 1.2E-16 111.3 12.1 113 73-189 2-131 (139)
132 cd04978 Ig4_L1-NrCAM_like Four 99.4 5.1E-12 1.1E-16 98.6 10.4 75 27-106 1-75 (76)
133 cd05876 Ig3_L1-CAM Third immun 99.4 2.9E-12 6.3E-17 97.8 8.6 70 131-200 1-70 (71)
134 cd05898 Ig5_KIRREL3 Fifth immu 99.4 8.6E-12 1.9E-16 99.9 11.4 88 558-647 2-97 (98)
135 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 6.8E-12 1.5E-16 97.8 10.4 74 32-105 3-79 (81)
136 cd05854 Ig6_Contactin-2 Sixth 99.3 8E-12 1.7E-16 98.9 10.5 77 28-107 1-82 (85)
137 cd04976 Ig2_VEGFR Second immun 99.3 5.3E-12 1.1E-16 96.1 9.0 70 30-107 1-70 (71)
138 cd05749 Ig2_Tyro3_like Second 99.3 8.5E-12 1.8E-16 96.9 9.6 74 15-100 1-75 (81)
139 cd05856 Ig2_FGFRL1-like Second 99.3 8.6E-12 1.9E-16 99.2 9.8 80 21-106 3-82 (82)
140 TIGR00864 PCC polycystin catio 99.3 9E-07 2E-11 107.3 55.4 498 82-650 1481-2039(2740)
141 cd05746 Ig4_Peroxidasin Fourth 99.3 6.9E-12 1.5E-16 95.2 8.5 68 30-104 1-68 (69)
142 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 1.3E-11 2.9E-16 93.0 9.8 68 27-104 1-68 (69)
143 cd05742 Ig1_VEGFR_like First i 99.3 6.5E-12 1.4E-16 99.9 8.4 76 573-649 1-83 (84)
144 cd05752 Ig1_FcgammaR_like Frst 99.3 5.2E-12 1.1E-16 97.6 7.4 67 559-637 1-68 (78)
145 cd05722 Ig1_Neogenin First imm 99.3 1.6E-11 3.4E-16 100.4 10.7 84 15-105 2-94 (95)
146 cd05864 Ig2_VEGFR-2 Second imm 99.3 8.5E-12 1.8E-16 93.9 8.2 69 131-201 1-69 (70)
147 cd05760 Ig2_PTK7 Second immuno 99.3 1.8E-11 4E-16 95.1 10.1 71 30-106 1-74 (77)
148 cd05726 Ig4_Robo Fhird immunog 99.3 1.5E-11 3.2E-16 99.2 9.8 76 27-109 1-84 (90)
149 cd05898 Ig5_KIRREL3 Fifth immu 99.3 3.9E-11 8.5E-16 96.1 12.0 93 11-104 1-97 (98)
150 cd05731 Ig3_L1-CAM_like Third 99.3 1.1E-11 2.4E-16 95.2 8.4 70 131-200 1-70 (71)
151 cd05752 Ig1_FcgammaR_like Frst 99.3 8.9E-12 1.9E-16 96.2 7.7 67 13-94 1-68 (78)
152 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.4E-11 3.1E-16 95.8 8.9 70 576-646 1-75 (76)
153 cd05771 IgC_Tapasin_R Tapasin- 99.3 4.6E-11 1E-15 105.4 13.0 116 471-639 2-132 (139)
154 cd05724 Ig2_Robo Second immuno 99.3 2.2E-11 4.7E-16 97.8 10.0 76 18-100 2-79 (86)
155 TIGR00864 PCC polycystin catio 99.3 2.8E-06 6.2E-11 103.2 55.7 551 15-666 1514-2141(2740)
156 cd05725 Ig3_Robo Third immunog 99.3 1.4E-11 2.9E-16 93.8 7.8 69 131-200 1-69 (69)
157 cd04970 Ig6_Contactin_like Six 99.3 2.6E-11 5.7E-16 96.6 9.6 77 28-107 1-82 (85)
158 cd05734 Ig7_DSCAM Seventh immu 99.3 1.1E-11 2.3E-16 97.3 7.1 69 576-648 1-78 (79)
159 cd04967 Ig1_Contactin First Ig 99.3 5.3E-11 1.1E-15 96.2 11.3 82 13-100 2-87 (91)
160 cd05729 Ig2_FGFR_like Second i 99.3 4.7E-11 1E-15 95.8 11.0 81 568-649 4-85 (85)
161 cd07701 Ig1_Necl-3 First (N-te 99.3 3.7E-11 8.1E-16 97.2 10.2 82 566-649 5-95 (95)
162 cd05853 Ig6_Contactin-4 Sixth 99.3 4.2E-11 9E-16 93.3 10.0 77 28-107 1-82 (85)
163 cd05754 Ig3_Perlecan_like Thir 99.3 2.2E-11 4.7E-16 97.2 8.4 79 562-647 5-84 (85)
164 cd05763 Ig_1 Subgroup of the i 99.3 3.2E-11 6.9E-16 93.5 9.1 71 30-106 1-74 (75)
165 cd05764 Ig_2 Subgroup of the i 99.3 3.4E-11 7.4E-16 93.2 9.2 73 128-200 1-74 (74)
166 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 3.8E-11 8.2E-16 94.9 9.5 76 573-649 1-82 (84)
167 cd05858 Ig3_FGFR-2 Third immun 99.3 4.8E-11 1E-15 96.2 10.1 80 27-106 1-89 (90)
168 cd07702 Ig2_VEGFR-1 Second imm 99.2 2.7E-11 5.8E-16 91.2 7.7 68 131-198 1-68 (72)
169 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 4.9E-11 1.1E-15 91.9 9.3 70 30-106 1-73 (74)
170 cd05742 Ig1_VEGFR_like First i 99.2 6E-11 1.3E-15 94.3 9.9 80 27-106 1-83 (84)
171 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.4E-10 3.1E-15 91.6 11.9 81 27-107 1-83 (84)
172 cd04974 Ig3_FGFR Third immunog 99.2 4.5E-11 9.7E-16 96.2 9.2 80 27-106 1-89 (90)
173 cd05873 Ig_Sema4D_like Immunog 99.2 7.5E-11 1.6E-15 92.3 9.9 69 565-638 3-71 (87)
174 cd05882 Ig1_Necl-1 First (N-te 99.2 1.3E-10 2.8E-15 93.5 11.1 81 566-648 5-94 (95)
175 cd05756 Ig1_IL1R_like First im 99.2 4.2E-11 9.1E-16 96.5 8.2 81 20-106 7-94 (94)
176 cd05882 Ig1_Necl-1 First (N-te 99.2 8.9E-11 1.9E-15 94.5 10.0 72 19-93 4-83 (95)
177 cd05757 Ig2_IL1R_like Second i 99.2 6.6E-11 1.4E-15 94.6 8.8 80 567-651 4-88 (92)
178 cd05736 Ig2_Follistatin_like S 99.2 1.4E-10 3E-15 90.3 9.6 74 30-107 1-74 (76)
179 cd05750 Ig_Pro_neuregulin Immu 99.2 1.5E-10 3.3E-15 90.0 8.5 70 30-103 1-74 (75)
180 cd05873 Ig_Sema4D_like Immunog 99.2 3.7E-10 8E-15 88.4 10.4 69 18-95 2-71 (87)
181 cd05765 Ig_3 Subgroup of the i 99.1 2.3E-10 5.1E-15 90.5 9.3 75 27-106 1-81 (81)
182 cd05860 Ig4_SCFR Fourth immuno 99.1 5.1E-10 1.1E-14 88.6 10.9 83 567-650 12-100 (101)
183 cd07701 Ig1_Necl-3 First (N-te 99.1 4E-10 8.7E-15 91.2 10.4 75 18-95 3-85 (95)
184 cd05754 Ig3_Perlecan_like Thir 99.1 2.3E-10 5E-15 91.2 8.9 80 15-104 4-84 (85)
185 cd04979 Ig_Semaphorin_C Immuno 99.1 2.1E-10 4.5E-15 92.4 8.7 81 566-650 4-87 (89)
186 cd05727 Ig2_Contactin-2-like S 99.1 1.1E-10 2.5E-15 92.5 6.3 73 566-641 11-86 (96)
187 cd05729 Ig2_FGFR_like Second i 99.1 9.8E-10 2.1E-14 88.0 11.6 83 21-106 3-85 (85)
188 cd04979 Ig_Semaphorin_C Immuno 99.1 6.7E-10 1.4E-14 89.4 9.6 83 18-107 2-87 (89)
189 cd05733 Ig6_L1-CAM_like Sixth 99.1 4.1E-10 9E-15 87.4 7.7 65 30-100 1-71 (77)
190 cd05895 Ig_Pro_neuregulin-1 Im 99.1 3.8E-10 8.3E-15 87.7 7.5 70 30-103 1-75 (76)
191 cd05874 Ig6_NrCAM Sixth immuno 99.1 7.1E-10 1.5E-14 85.8 8.9 66 30-101 1-72 (77)
192 cd05875 Ig6_hNeurofascin_like 99.1 8.2E-10 1.8E-14 85.5 9.1 65 131-195 1-72 (77)
193 cd07690 Ig1_CD4 First immunogl 99.1 5.4E-10 1.2E-14 89.2 8.0 73 568-641 2-91 (94)
194 cd05753 Ig2_FcgammaR_like Seco 99.1 4.8E-10 1E-14 88.2 7.5 67 567-642 8-75 (83)
195 cd05860 Ig4_SCFR Fourth immuno 99.1 3.1E-09 6.7E-14 84.2 11.6 89 19-107 10-100 (101)
196 cd05862 Ig1_VEGFR First immuno 99.0 9.8E-10 2.1E-14 87.1 8.5 77 573-650 1-85 (86)
197 smart00408 IGc2 Immunoglobulin 99.0 7.8E-10 1.7E-14 82.7 7.6 63 572-639 1-63 (63)
198 cd05734 Ig7_DSCAM Seventh immu 99.0 9.4E-10 2E-14 86.2 8.0 68 30-104 1-77 (79)
199 cd05717 Ig1_Necl-1-3_like Firs 99.0 2.1E-09 4.6E-14 87.7 9.8 82 566-649 5-95 (95)
200 smart00410 IG_like Immunoglobu 99.0 5.1E-09 1.1E-13 84.0 12.0 82 567-649 3-85 (86)
201 smart00409 IG Immunoglobulin. 99.0 5.1E-09 1.1E-13 84.0 12.0 82 567-649 3-85 (86)
202 PF13895 Ig_2: Immunoglobulin 99.0 1.7E-09 3.6E-14 85.6 8.9 70 568-648 9-79 (80)
203 cd05845 Ig2_L1-CAM_like Second 99.0 6.9E-10 1.5E-14 87.9 6.4 73 565-640 10-84 (95)
204 cd05897 Ig2_IL1R2_like Second 99.0 1.7E-09 3.7E-14 86.0 8.4 73 567-641 4-81 (95)
205 cd05862 Ig1_VEGFR First immuno 99.0 3.2E-09 6.9E-14 84.2 9.5 80 27-107 1-85 (86)
206 cd05871 Ig_Semaphorin_classIII 99.0 2.7E-09 5.8E-14 85.4 8.8 78 567-650 5-89 (91)
207 cd05727 Ig2_Contactin-2-like S 99.0 1.6E-09 3.5E-14 86.0 6.8 74 18-97 9-85 (96)
208 cd07690 Ig1_CD4 First immunogl 99.0 3.7E-09 8.1E-14 84.4 8.7 76 22-98 2-91 (94)
209 PF13895 Ig_2: Immunoglobulin 98.9 5.7E-09 1.2E-13 82.5 9.7 78 13-106 2-80 (80)
210 smart00410 IG_like Immunoglobu 98.9 2.2E-08 4.8E-13 80.3 13.0 84 19-106 1-85 (86)
211 smart00409 IG Immunoglobulin. 98.9 2.2E-08 4.8E-13 80.3 13.0 84 19-106 1-85 (86)
212 cd05757 Ig2_IL1R_like Second i 98.9 3.6E-09 7.8E-14 84.6 8.1 78 122-200 4-86 (92)
213 cd05753 Ig2_FcgammaR_like Seco 98.9 3.4E-09 7.3E-14 83.4 7.6 67 122-193 8-75 (83)
214 cd05845 Ig2_L1-CAM_like Second 98.9 1.9E-09 4.1E-14 85.4 6.1 78 12-96 2-83 (95)
215 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.2E-08 2.7E-13 83.2 10.9 83 19-105 4-94 (95)
216 cd05871 Ig_Semaphorin_classIII 98.9 9.5E-09 2.1E-13 82.2 9.9 79 20-107 4-89 (91)
217 cd05759 Ig2_KIRREL3-like Secon 98.9 7.2E-09 1.6E-13 81.9 8.8 74 575-649 1-80 (82)
218 cd05885 Ig2_Necl-4 Second immu 98.9 6.5E-09 1.4E-13 79.3 7.6 64 575-641 1-69 (80)
219 cd05881 Ig1_Necl-2 First (N-te 98.9 3.3E-08 7.1E-13 78.8 10.8 70 566-636 5-83 (95)
220 smart00408 IGc2 Immunoglobulin 98.8 1.2E-08 2.5E-13 76.3 7.8 63 127-190 1-63 (63)
221 PHA03376 BARF1; Provisional 98.8 7.5E-08 1.6E-12 83.3 13.3 76 567-643 20-115 (221)
222 PF00047 ig: Immunoglobulin do 98.8 8.7E-09 1.9E-13 77.1 6.5 63 27-91 1-64 (64)
223 cd05885 Ig2_Necl-4 Second immu 98.8 2.3E-08 4.9E-13 76.4 8.5 66 30-97 2-68 (80)
224 PF00047 ig: Immunoglobulin do 98.8 7.4E-09 1.6E-13 77.5 5.8 61 573-634 1-64 (64)
225 cd05872 Ig_Sema4B_like Immunog 98.8 2.8E-08 6.1E-13 77.1 8.7 79 19-106 3-82 (85)
226 cd05872 Ig_Sema4B_like Immunog 98.8 3.4E-08 7.3E-13 76.7 8.3 78 423-504 4-81 (85)
227 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 4.9E-08 1.1E-12 77.6 9.0 81 566-649 8-104 (104)
228 PHA03376 BARF1; Provisional 98.7 9E-08 2E-12 82.8 10.5 123 21-151 20-162 (221)
229 cd05881 Ig1_Necl-2 First (N-te 98.7 2.3E-07 5E-12 74.0 11.3 79 423-501 5-93 (95)
230 cd04983 IgV_TCR_alpha_like Imm 98.7 8.2E-08 1.8E-12 80.9 9.2 78 16-95 2-93 (109)
231 cd05897 Ig2_IL1R2_like Second 98.7 7.3E-08 1.6E-12 76.7 7.5 73 21-98 4-81 (95)
232 cd05759 Ig2_KIRREL3-like Secon 98.7 1.5E-07 3.2E-12 74.3 9.3 71 29-99 1-73 (82)
233 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 1.1E-07 2.5E-12 75.6 8.3 81 20-106 8-104 (104)
234 PF13927 Ig_3: Immunoglobulin 98.6 3.8E-08 8.2E-13 76.5 4.6 73 559-636 2-75 (75)
235 cd05751 Ig1_LILRB1_like First 98.6 1.2E-07 2.5E-12 76.4 7.1 73 559-637 3-75 (91)
236 PF13927 Ig_3: Immunoglobulin 98.6 7.6E-08 1.7E-12 74.8 5.3 74 12-93 1-75 (75)
237 cd05899 IgV_TCR_beta Immunoglo 98.6 3.1E-07 6.7E-12 77.3 8.8 76 16-95 2-95 (110)
238 cd04983 IgV_TCR_alpha_like Imm 98.6 3E-07 6.4E-12 77.5 8.4 73 566-639 6-94 (109)
239 cd05774 Ig_CEACAM_D1 First imm 98.5 4.7E-07 1E-11 74.1 9.0 83 16-105 2-104 (105)
240 cd05751 Ig1_LILRB1_like First 98.5 2.8E-07 6.1E-12 74.1 7.5 73 114-188 3-75 (91)
241 cd05879 Ig_P0 Immunoglobulin ( 98.5 7.9E-07 1.7E-11 74.4 9.9 77 19-97 5-105 (116)
242 cd05714 Ig_CSPGs_LP Immunoglob 98.5 9.3E-07 2E-11 73.8 10.3 78 572-650 1-103 (106)
243 cd05714 Ig_CSPGs_LP Immunoglob 98.5 1.1E-06 2.4E-11 73.4 10.4 81 26-107 1-103 (106)
244 cd05877 Ig_LP_like Immunoglobu 98.5 1.5E-06 3.2E-11 72.6 10.5 78 572-650 1-103 (106)
245 cd05877 Ig_LP_like Immunoglobu 98.5 1.2E-06 2.5E-11 73.2 9.9 79 26-107 1-103 (106)
246 cd05880 Ig_EVA1 Immunoglobulin 98.5 9.8E-07 2.1E-11 74.4 9.3 77 18-96 4-103 (115)
247 cd05713 Ig_MOG_like Immunoglob 98.5 1.1E-06 2.5E-11 72.4 9.6 76 573-649 1-99 (100)
248 cd04980 IgV_L_kappa Immunoglob 98.5 6.9E-07 1.5E-11 74.5 8.2 76 15-94 3-93 (106)
249 cd05899 IgV_TCR_beta Immunoglo 98.4 6.7E-07 1.4E-11 75.2 7.9 72 566-639 6-96 (110)
250 cd05713 Ig_MOG_like Immunoglob 98.4 1.9E-06 4.1E-11 71.1 10.3 79 27-106 1-99 (100)
251 cd05718 Ig1_PVR_like First imm 98.4 1.7E-06 3.7E-11 71.2 9.7 75 574-649 1-97 (98)
252 cd05883 Ig2_Necl-2 Second immu 98.4 2.7E-06 5.9E-11 65.2 9.7 74 432-505 1-81 (82)
253 cd05883 Ig2_Necl-2 Second immu 98.4 3E-06 6.5E-11 65.0 9.9 66 30-96 2-68 (82)
254 cd00098 IgC Immunoglobulin Con 98.4 7.8E-07 1.7E-11 72.7 7.4 73 25-97 11-87 (95)
255 cd05900 Ig_Aggrecan Immunoglob 98.4 1.8E-06 4E-11 71.6 9.4 78 572-650 1-109 (112)
256 cd05900 Ig_Aggrecan Immunoglob 98.4 1.3E-06 2.8E-11 72.5 8.4 81 26-107 1-109 (112)
257 cd00099 IgV Immunoglobulin var 98.4 9.7E-07 2.1E-11 73.8 7.8 70 569-639 2-91 (105)
258 cd04980 IgV_L_kappa Immunoglob 98.4 1.2E-06 2.6E-11 73.1 8.3 72 565-637 7-93 (106)
259 cd00099 IgV Immunoglobulin var 98.4 1.1E-06 2.3E-11 73.5 8.0 73 22-96 1-91 (105)
260 cd04982 IgV_TCR_gamma Immunogl 98.4 1.4E-06 3E-11 74.2 8.5 76 16-93 2-98 (116)
261 cd05715 Ig_P0-like Immunoglobu 98.4 1.8E-06 3.9E-11 73.3 9.0 78 18-97 4-105 (116)
262 cd05755 Ig2_ICAM-1_like Second 98.4 1.5E-06 3.3E-11 69.6 7.9 75 565-640 8-87 (100)
263 cd05718 Ig1_PVR_like First imm 98.4 2.5E-06 5.5E-11 70.1 9.6 76 28-106 1-97 (98)
264 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.6E-06 5.7E-11 66.8 8.9 64 576-641 2-71 (82)
265 cd05878 Ig_Aggrecan_like Immun 98.4 3.7E-06 8E-11 70.2 10.2 81 26-107 1-107 (110)
266 cd05879 Ig_P0 Immunoglobulin ( 98.4 3.9E-06 8.5E-11 70.2 10.1 83 566-649 6-114 (116)
267 cd05761 Ig2_Necl-1-4_like Seco 98.3 3.2E-06 6.9E-11 66.4 9.0 68 30-97 2-70 (82)
268 cd05775 Ig_SLAM-CD84_like_N N- 98.3 2E-06 4.3E-11 70.1 7.5 78 571-649 2-96 (97)
269 cd05775 Ig_SLAM-CD84_like_N N- 98.3 1.1E-06 2.4E-11 71.6 5.8 82 25-106 2-96 (97)
270 cd05711 Ig_FcalphaRI Immunoglo 98.3 5.1E-06 1.1E-10 67.1 9.4 75 13-93 2-76 (94)
271 cd00098 IgC Immunoglobulin Con 98.3 1.9E-06 4.2E-11 70.3 6.7 69 571-640 11-87 (95)
272 cd07705 Ig2_Necl-1 Second immu 98.3 6.8E-06 1.5E-10 64.4 9.3 64 576-641 2-72 (83)
273 cd05774 Ig_CEACAM_D1 First imm 98.3 3.8E-06 8.2E-11 68.8 8.1 76 567-647 7-103 (105)
274 cd05755 Ig2_ICAM-1_like Second 98.3 4.6E-06 1E-10 66.9 8.3 69 122-190 10-86 (100)
275 cd05901 Ig_Versican Immunoglob 98.3 1.1E-05 2.5E-10 66.5 10.6 80 27-107 2-114 (117)
276 cd07706 IgV_TCR_delta Immunogl 98.3 4.4E-06 9.6E-11 71.0 8.6 78 15-94 2-94 (116)
277 cd05741 Ig_CEACAM_D1_like Firs 98.3 3.9E-06 8.4E-11 68.1 7.9 71 27-104 1-90 (92)
278 cd04982 IgV_TCR_gamma Immunogl 98.2 4.3E-06 9.3E-11 71.2 8.3 70 567-637 7-99 (116)
279 cd07705 Ig2_Necl-1 Second immu 98.2 1.1E-05 2.3E-10 63.3 9.8 67 30-96 2-70 (83)
280 cd05880 Ig_EVA1 Immunoglobulin 98.2 7.5E-06 1.6E-10 69.0 9.4 74 566-640 6-104 (115)
281 cd05902 Ig_Neurocan Immunoglob 98.2 9.8E-06 2.1E-10 66.9 9.8 81 26-107 1-107 (110)
282 cd04984 IgV_L_lambda Immunoglo 98.2 4.7E-06 1E-10 68.3 7.9 68 569-637 2-85 (98)
283 cd04984 IgV_L_lambda Immunoglo 98.2 4.8E-06 1E-10 68.3 7.7 69 22-94 1-85 (98)
284 PHA03270 envelope glycoprotein 98.2 0.00021 4.6E-09 70.8 19.7 79 469-601 181-265 (466)
285 cd05772 IgC_SIRP Signal-regula 98.2 1.8E-05 3.8E-10 65.6 10.6 76 21-97 15-94 (111)
286 cd05878 Ig_Aggrecan_like Immun 98.2 1.1E-05 2.4E-10 67.3 9.5 78 572-650 1-107 (110)
287 PF07686 V-set: Immunoglobulin 98.2 1.7E-05 3.8E-10 67.4 10.9 78 15-94 4-101 (114)
288 cd05716 Ig_pIgR Immunoglobulin 98.2 6.5E-06 1.4E-10 67.6 7.4 72 22-95 2-87 (98)
289 cd05884 Ig2_Necl-3 Second immu 98.2 1E-05 2.3E-10 63.2 8.0 64 576-640 2-71 (83)
290 cd05715 Ig_P0-like Immunoglobu 98.1 1.2E-05 2.7E-10 68.1 9.0 74 566-640 6-105 (116)
291 cd05884 Ig2_Necl-3 Second immu 98.1 1.5E-05 3.2E-10 62.4 8.6 67 30-96 2-70 (83)
292 cd05741 Ig_CEACAM_D1_like Firs 98.1 1E-05 2.2E-10 65.6 8.1 66 573-640 1-82 (92)
293 PF08205 C2-set_2: CD80-like C 98.1 1.4E-05 3.1E-10 64.1 8.5 84 13-97 1-86 (89)
294 cd05888 Ig1_Nectin-4_like Frst 98.1 1.9E-05 4.1E-10 64.7 9.0 76 29-106 2-99 (100)
295 PHA02987 Ig domain OX-2-like p 98.1 2.1E-05 4.5E-10 69.3 9.5 87 19-108 22-123 (189)
296 cd05712 Ig_Siglec_N Immunoglob 98.1 1.9E-05 4.2E-10 67.2 9.1 76 17-94 4-102 (119)
297 cd05902 Ig_Neurocan Immunoglob 98.1 3.2E-05 6.9E-10 63.9 9.8 77 573-650 2-107 (110)
298 PF07686 V-set: Immunoglobulin 98.1 4.2E-05 9.2E-10 65.0 11.0 73 564-637 7-101 (114)
299 cd05888 Ig1_Nectin-4_like Frst 98.1 3.6E-05 7.7E-10 63.1 9.8 74 575-649 2-99 (100)
300 cd05886 Ig1_Nectin-1_like Firs 98.0 5.1E-05 1.1E-09 61.4 10.1 74 575-649 2-98 (99)
301 cd05711 Ig_FcalphaRI Immunoglo 98.0 1.4E-05 3.1E-10 64.5 6.7 67 567-635 9-75 (94)
302 cd07700 IgV_CD8_beta Immunoglo 98.0 2.3E-05 5E-10 65.3 7.9 70 22-93 1-93 (107)
303 cd05846 Ig1_MRC-OX-2_like Firs 98.0 4.2E-05 9.1E-10 62.4 9.1 77 27-106 1-96 (97)
304 PHA03269 envelope glycoprotein 98.0 0.00033 7.2E-09 70.4 16.7 79 471-601 290-373 (566)
305 PHA03270 envelope glycoprotein 98.0 0.00079 1.7E-08 66.9 18.7 168 165-369 181-364 (466)
306 cd05886 Ig1_Nectin-1_like Firs 98.0 7.2E-05 1.6E-09 60.6 9.8 75 29-106 2-98 (99)
307 cd05901 Ig_Versican Immunoglob 98.0 0.00012 2.5E-09 60.6 10.7 38 612-650 77-114 (117)
308 cd07694 Ig2_CD4 Second immunog 97.9 8.6E-05 1.9E-09 56.7 9.0 77 21-107 8-86 (88)
309 cd05716 Ig_pIgR Immunoglobulin 97.9 5.3E-05 1.1E-09 62.1 8.5 70 568-638 2-87 (98)
310 cd05887 Ig1_Nectin-3_like Firs 97.9 8.2E-05 1.8E-09 59.6 9.1 76 28-106 1-95 (96)
311 cd05846 Ig1_MRC-OX-2_like Firs 97.9 7.4E-05 1.6E-09 61.0 9.2 76 573-649 1-96 (97)
312 cd05887 Ig1_Nectin-3_like Firs 97.9 9.1E-05 2E-09 59.3 9.3 75 574-649 1-95 (96)
313 cd07694 Ig2_CD4 Second immunog 97.9 9.2E-05 2E-09 56.6 8.7 75 567-650 8-84 (88)
314 cd07699 IgC_L Immunoglobulin C 97.9 3.7E-05 8.1E-10 62.7 7.3 85 12-96 1-90 (100)
315 cd07706 IgV_TCR_delta Immunogl 97.9 5E-05 1.1E-09 64.5 8.1 72 565-637 6-94 (116)
316 cd00096 Ig Immunoglobulin doma 97.9 9.5E-05 2.1E-09 56.2 9.2 66 30-95 1-66 (74)
317 smart00407 IGc1 Immunoglobulin 97.9 0.00011 2.4E-09 56.4 9.2 67 29-95 1-71 (75)
318 cd05847 IgC_CH2_IgE CH2 domain 97.9 9.2E-05 2E-09 59.3 9.0 80 18-97 5-88 (94)
319 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00011 2.4E-09 59.3 9.5 79 12-96 2-84 (93)
320 cd05772 IgC_SIRP Signal-regula 97.9 0.00012 2.6E-09 60.7 9.8 70 569-641 17-95 (111)
321 cd07696 IgC_CH3 CH3 domain (th 97.9 4.8E-05 1E-09 61.2 6.9 79 18-96 5-87 (96)
322 cd05768 IgC_CH4 CH4 domain (fo 97.9 6.4E-05 1.4E-09 61.5 7.7 81 16-96 5-92 (102)
323 cd04981 IgV_H Immunoglobulin ( 97.9 7E-05 1.5E-09 63.3 8.3 75 17-93 2-97 (117)
324 cd05720 Ig_CD8_alpha Immunoglo 97.9 4.5E-05 9.8E-10 63.0 6.9 69 23-93 2-90 (104)
325 PHA03271 envelope glycoprotein 97.9 0.0037 8.1E-08 61.8 20.6 173 11-190 93-336 (490)
326 PHA02987 Ig domain OX-2-like p 97.8 0.00012 2.7E-09 64.5 9.6 84 424-507 24-125 (189)
327 cd00096 Ig Immunoglobulin doma 97.8 7.9E-05 1.7E-09 56.7 7.8 63 576-639 1-67 (74)
328 cd07700 IgV_CD8_beta Immunoglo 97.8 5.8E-05 1.3E-09 62.9 7.1 67 569-636 2-93 (107)
329 smart00407 IGc1 Immunoglobulin 97.8 0.00011 2.3E-09 56.5 7.8 63 575-638 1-71 (75)
330 cd05770 IgC_beta2m Class I maj 97.8 0.00016 3.5E-09 57.6 8.9 68 570-639 12-84 (93)
331 cd05769 IgC_TCR_beta T cell re 97.8 0.00014 3E-09 60.5 8.5 89 12-100 2-97 (115)
332 PHA03273 envelope glycoprotein 97.8 0.0017 3.7E-08 65.3 17.5 79 470-600 198-280 (486)
333 KOG0613|consensus 97.8 0.00016 3.6E-09 81.8 11.7 239 420-734 234-479 (1205)
334 cd05720 Ig_CD8_alpha Immunoglo 97.8 7.9E-05 1.7E-09 61.6 7.0 67 569-636 2-90 (104)
335 PHA03273 envelope glycoprotein 97.8 0.0021 4.6E-08 64.7 17.9 162 166-363 198-376 (486)
336 PHA03271 envelope glycoprotein 97.8 0.0063 1.4E-07 60.2 20.7 201 382-588 208-434 (490)
337 PF08205 C2-set_2: CD80-like C 97.7 0.00013 2.8E-09 58.5 7.8 68 573-641 14-87 (89)
338 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.0002 4.4E-09 57.7 8.8 66 573-639 14-84 (93)
339 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00014 3E-09 58.3 7.3 71 572-643 13-91 (94)
340 PHA03269 envelope glycoprotein 97.7 0.0046 1E-07 62.5 19.0 202 383-588 291-516 (566)
341 cd07699 IgC_L Immunoglobulin C 97.7 8.8E-05 1.9E-09 60.5 6.0 71 569-640 13-91 (100)
342 cd05767 IgC_MHC_II_alpha Class 97.7 0.00037 8E-09 55.8 9.2 65 571-639 13-85 (94)
343 PF07654 C1-set: Immunoglobuli 97.7 0.00017 3.7E-09 56.8 7.3 68 26-96 7-78 (83)
344 KOG1480|consensus 97.7 1.2E-05 2.6E-10 84.9 1.0 186 11-201 23-219 (909)
345 cd05766 IgC_MHC_II_beta Class 97.7 0.00044 9.6E-09 55.6 9.7 70 570-640 11-85 (94)
346 cd05767 IgC_MHC_II_alpha Class 97.6 0.00082 1.8E-08 53.8 10.4 69 25-96 13-85 (94)
347 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00017 3.6E-09 57.8 6.4 84 12-96 4-90 (99)
348 cd05766 IgC_MHC_II_beta Class 97.6 0.00057 1.2E-08 55.0 9.5 70 25-97 12-85 (94)
349 PHA02914 Immunoglobulin-like d 97.6 0.1 2.2E-06 51.7 29.5 118 243-367 272-422 (500)
350 cd05889 Ig1_DNAM-1_like First 97.6 0.00068 1.5E-08 54.4 9.2 74 28-104 1-93 (96)
351 cd05768 IgC_CH4 CH4 domain (fo 97.5 0.00023 5E-09 58.2 6.3 70 569-639 12-92 (102)
352 cd05712 Ig_Siglec_N Immunoglob 97.5 0.00047 1E-08 58.7 8.4 71 566-637 7-102 (119)
353 PF07654 C1-set: Immunoglobuli 97.5 0.00051 1.1E-08 54.0 8.0 66 572-641 7-80 (83)
354 cd05770 IgC_beta2m Class I maj 97.5 0.0012 2.6E-08 52.6 10.1 69 25-96 13-84 (93)
355 cd05719 Ig2_PVR_like Second im 97.5 0.00065 1.4E-08 54.6 8.5 73 26-101 14-88 (95)
356 cd07696 IgC_CH3 CH3 domain (th 97.5 0.00027 5.9E-09 56.9 6.2 73 567-640 8-88 (96)
357 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.00067 1.5E-08 55.3 8.3 75 16-92 2-94 (115)
358 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.00089 1.9E-08 53.8 8.7 69 26-95 15-87 (95)
359 cd05889 Ig1_DNAM-1_like First 97.4 0.0014 3E-08 52.6 9.5 73 574-647 1-93 (96)
360 cd05719 Ig2_PVR_like Second im 97.4 0.001 2.3E-08 53.4 8.3 71 574-648 16-92 (95)
361 cd07703 Ig2_Nectin-2_like Seco 97.4 0.001 2.3E-08 53.2 8.2 81 22-105 8-92 (95)
362 cd05769 IgC_TCR_beta T cell re 97.4 0.00068 1.5E-08 56.4 7.4 78 567-645 12-99 (115)
363 cd07697 IgC_TCR_gamma T cell r 97.4 0.00056 1.2E-08 54.8 6.6 66 569-638 12-85 (96)
364 smart00406 IGv Immunoglobulin 97.4 0.00066 1.4E-08 53.2 7.0 61 29-91 1-81 (81)
365 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00036 7.8E-09 49.9 4.4 51 572-637 6-56 (65)
366 KOG0613|consensus 97.3 0.0005 1.1E-08 78.1 7.8 213 72-310 278-515 (1205)
367 cd04981 IgV_H Immunoglobulin ( 97.3 0.00095 2.1E-08 56.5 7.7 69 567-636 6-97 (117)
368 cd07697 IgC_TCR_gamma T cell r 97.3 0.0022 4.7E-08 51.5 8.7 75 19-95 8-85 (96)
369 smart00406 IGv Immunoglobulin 97.3 0.00081 1.8E-08 52.7 6.4 58 575-633 1-80 (81)
370 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.00089 1.9E-08 48.2 5.5 59 573-650 6-64 (69)
371 cd07704 Ig2_Nectin-3-4_like Se 97.2 0.002 4.3E-08 51.4 8.1 77 19-97 8-86 (97)
372 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.00071 1.5E-08 48.7 4.5 59 128-201 6-64 (69)
373 cd04985 IgC_CH1 CH1 domain (fi 97.1 0.0024 5.1E-08 51.4 7.8 65 572-638 15-87 (95)
374 cd07703 Ig2_Nectin-2_like Seco 97.1 0.004 8.7E-08 49.8 8.6 71 574-648 16-92 (95)
375 cd07692 Ig_CD3_epsilon Immunog 97.1 0.002 4.4E-08 46.2 6.0 51 428-491 5-55 (65)
376 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0026 5.5E-08 50.3 7.1 63 125-187 12-84 (99)
377 cd07704 Ig2_Nectin-3-4_like Se 96.9 0.0059 1.3E-07 48.7 8.2 70 121-190 9-85 (97)
378 cd05721 IgV_CTLA-4 Immunoglobu 96.7 0.0095 2.1E-07 48.7 7.7 69 566-635 6-94 (115)
379 cd07689 Ig2_VCAM-1 Second immu 96.7 0.0098 2.1E-07 47.0 7.5 69 24-93 12-84 (99)
380 PHA02633 hypothetical protein; 96.6 0.006 1.3E-07 42.8 5.1 36 73-108 19-54 (63)
381 PHA02982 hypothetical protein; 96.5 0.037 8E-07 49.5 10.7 81 424-504 33-136 (251)
382 PF08204 V-set_CD47: CD47 immu 96.5 0.0037 8.1E-08 52.3 4.3 83 24-107 24-120 (130)
383 PHA02982 hypothetical protein; 96.4 0.053 1.2E-06 48.5 10.8 82 567-649 33-135 (251)
384 PHA02633 hypothetical protein; 96.3 0.011 2.3E-07 41.5 5.1 36 614-650 18-53 (63)
385 cd04986 IgC_CH2 CH2 domain (se 96.3 0.0062 1.3E-07 48.9 4.4 66 427-493 16-89 (99)
386 KOG1480|consensus 96.2 0.001 2.2E-08 70.9 -0.5 167 235-404 24-206 (909)
387 PHA02914 Immunoglobulin-like d 96.2 1.5 3.4E-05 43.8 33.2 159 423-640 272-469 (500)
388 PF08204 V-set_CD47: CD47 immu 96.0 0.0048 1E-07 51.7 2.4 79 570-650 24-120 (130)
389 KOG4597|consensus 95.6 0.023 5E-07 57.4 6.0 94 13-108 197-293 (560)
390 PF02124 Marek_A: Marek's dise 95.0 0.57 1.2E-05 43.1 12.2 78 690-777 79-166 (211)
391 KOG4597|consensus 94.9 0.029 6.2E-07 56.8 4.2 91 559-650 197-292 (560)
392 PHA03042 CD47-like protein; Pr 94.5 0.2 4.3E-06 47.3 8.2 71 571-649 29-104 (286)
393 PF02124 Marek_A: Marek's dise 94.4 3.3 7.2E-05 38.3 15.6 135 42-186 7-158 (211)
394 PHA03042 CD47-like protein; Pr 94.3 0.14 3E-06 48.3 6.9 69 128-200 31-104 (286)
395 PHA02865 MHC-like TNF binding 94.1 0.064 1.4E-06 53.1 4.5 21 575-595 216-238 (338)
396 PF11465 Receptor_2B4: Natural 94.1 0.28 6.2E-06 39.2 7.1 43 606-650 63-105 (108)
397 PF07354 Sp38: Zona-pellucida- 93.5 0.12 2.5E-06 48.7 4.8 50 586-638 11-60 (271)
398 PHA02865 MHC-like TNF binding 93.2 0.53 1.1E-05 46.8 8.9 40 6-49 197-238 (338)
399 PF07354 Sp38: Zona-pellucida- 92.6 0.15 3.3E-06 48.0 4.2 48 442-492 11-59 (271)
400 PF11465 Receptor_2B4: Natural 91.2 0.63 1.4E-05 37.3 5.5 44 279-322 62-106 (108)
401 PF06328 Lep_receptor_Ig: Ig-l 91.2 0.89 1.9E-05 35.9 6.4 69 18-92 9-82 (89)
402 PF05955 Herpes_gp2: Equine he 90.6 5.9 0.00013 34.7 11.2 73 708-782 108-192 (226)
403 PF05790 C2-set: Immunoglobuli 90.6 2.1 4.5E-05 33.0 7.8 33 74-106 45-78 (80)
404 PHA03283 envelope glycoprotein 90.6 6.9 0.00015 41.2 13.7 96 165-271 133-233 (542)
405 PF06328 Lep_receptor_Ig: Ig-l 89.3 3.1 6.8E-05 32.8 8.1 65 566-633 11-80 (89)
406 PF05790 C2-set: Immunoglobuli 89.3 2.9 6.3E-05 32.2 7.7 52 142-200 26-78 (80)
407 PF03921 ICAM_N: Intercellular 87.6 6.5 0.00014 31.0 8.7 78 15-107 6-86 (91)
408 PF06832 BiPBP_C: Penicillin-B 87.3 7 0.00015 30.9 9.2 79 6-100 4-86 (89)
409 PHA03286 envelope glycoprotein 87.3 16 0.00036 37.6 13.5 93 165-271 126-225 (492)
410 PF02480 Herpes_gE: Alphaherpe 87.2 1.6 3.5E-05 46.2 7.0 37 470-506 89-127 (439)
411 PHA03283 envelope glycoprotein 86.7 7 0.00015 41.1 10.8 37 613-650 133-169 (542)
412 PF06832 BiPBP_C: Penicillin-B 86.3 11 0.00024 29.8 9.8 74 557-643 9-86 (89)
413 PHA03282 envelope glycoprotein 85.8 25 0.00054 36.6 13.8 30 165-195 332-361 (540)
414 PHA03052 Hypothetical protein; 85.8 2.5 5.4E-05 30.5 5.0 35 19-53 4-41 (69)
415 PF03921 ICAM_N: Intercellular 84.2 19 0.00041 28.5 10.3 79 119-203 9-88 (91)
416 PHA03281 envelope glycoprotein 83.7 13 0.00028 39.3 11.0 164 471-643 299-504 (642)
417 PHA03052 Hypothetical protein; 83.6 3.2 7E-05 30.0 4.8 38 702-739 5-45 (69)
418 KOG1026|consensus 83.5 2.1 4.6E-05 47.7 5.9 158 424-650 201-363 (774)
419 KOG1026|consensus 82.5 1.5 3.3E-05 48.8 4.4 157 21-201 201-363 (774)
420 PRK14081 triple tyrosine motif 82.3 91 0.002 35.0 41.8 313 80-444 251-606 (667)
421 PHA03286 envelope glycoprotein 82.3 13 0.00029 38.3 10.3 97 612-732 125-227 (492)
422 cd05890 Ig2_Nectin-1_like Seco 82.0 5.2 0.00011 31.5 5.7 68 131-199 23-97 (98)
423 PHA03282 envelope glycoprotein 81.2 9.3 0.0002 39.5 8.8 37 613-650 123-161 (540)
424 PHA03240 envelope glycoprotein 75.3 4.6 9.9E-05 36.6 4.2 68 20-94 31-126 (258)
425 PF02480 Herpes_gE: Alphaherpe 75.1 8.4 0.00018 40.9 7.0 78 72-149 89-189 (439)
426 PHA03281 envelope glycoprotein 74.7 26 0.00057 37.1 9.9 91 614-731 298-395 (642)
427 PHA03189 UL14 tegument protein 73.3 30 0.00065 33.7 9.3 80 19-101 59-162 (348)
428 cd05890 Ig2_Nectin-1_like Seco 72.8 13 0.00029 29.3 5.7 65 29-96 22-88 (98)
429 PRK14081 triple tyrosine motif 72.0 1.8E+02 0.0038 32.8 49.9 236 247-506 302-574 (667)
430 PHA03189 UL14 tegument protein 69.5 32 0.00069 33.6 8.6 87 566-654 60-173 (348)
431 PF02010 REJ: REJ domain; Int 65.2 6.6 0.00014 42.5 3.9 113 29-150 2-125 (440)
432 KOG0200|consensus 65.0 86 0.0019 35.5 12.7 106 72-187 13-138 (609)
433 PHA03112 IL-18 binding protein 64.5 29 0.00064 29.8 6.6 73 569-641 34-122 (141)
434 smart00089 PKD Repeats in poly 64.0 58 0.0013 24.7 8.1 65 570-649 11-78 (79)
435 PF00801 PKD: PKD domain; Int 54.2 68 0.0015 23.6 6.6 61 567-642 5-68 (69)
436 PHA03112 IL-18 binding protein 54.2 35 0.00076 29.3 5.4 25 428-452 36-63 (141)
437 PHA03240 envelope glycoprotein 53.0 19 0.00041 32.8 3.8 83 567-650 32-144 (258)
438 PF02440 Adeno_E3_CR1: Adenovi 50.4 34 0.00074 24.8 4.1 21 247-271 2-22 (63)
439 PF11141 DUF2914: Protein of u 47.6 1.1E+02 0.0024 22.5 7.6 57 144-200 8-65 (66)
440 KOG0200|consensus 45.1 1.1E+02 0.0024 34.6 9.5 36 610-646 113-148 (609)
441 PF11141 DUF2914: Protein of u 39.3 1.5E+02 0.0034 21.7 8.3 57 266-322 8-65 (66)
442 PF02010 REJ: REJ domain; Int 37.6 36 0.00077 36.8 4.0 71 130-202 2-78 (440)
443 PF11049 KSHV_K1: Glycoprotein 33.8 93 0.002 22.6 4.0 58 434-507 2-59 (71)
444 smart00089 PKD Repeats in poly 27.3 2.7E+02 0.0059 20.9 8.1 27 25-51 12-39 (79)
445 PF00801 PKD: PKD domain; Int 27.0 1.2E+02 0.0026 22.3 4.1 30 21-50 5-34 (69)
446 cd00146 PKD polycystic kidney 26.5 2.9E+02 0.0062 20.9 7.6 25 573-597 14-39 (81)
447 PF05955 Herpes_gp2: Equine he 23.1 5.6E+02 0.012 23.1 13.0 147 253-402 4-177 (226)
448 PF01688 Herpes_gI: Alphaherpe 21.9 1.4E+02 0.003 26.7 4.0 23 73-95 125-147 (161)
449 PF01688 Herpes_gI: Alphaherpe 21.6 2.2E+02 0.0049 25.4 5.2 37 612-649 122-158 (161)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.6e-59 Score=503.50 Aligned_cols=549 Identities=23% Similarity=0.355 Sum_probs=432.2
Q ss_pred CeeeecCCceEe-cCCCe--EEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccC-CCCCeE
Q psy2775 13 PTFSKKTKPVYA-EENSE--VTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIK-KREEGV 86 (785)
Q Consensus 13 p~~~~~~~~~~v-~~G~~--v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~ 86 (785)
|.|...+....+ ..-+. +.|.|.+.|+|.|++.|++||....... ++... + ++|.|.+.. ..|.|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~------G~lvI~~p~~~~d~G~ 111 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--G------GTLVITNPDAALDQGI 111 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--c------CceEecCCcchhhcce
Confidence 899888775444 33333 9999999999999999999999764433 33333 2 348888887 789999
Q ss_pred EEEEEEcCCeeEEE-EeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcc---cceEE
Q psy2775 87 YTVVAKNREGEAKM-DIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQIT 160 (785)
Q Consensus 87 Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~---~~~~~ 160 (785)
|+|.|+|..|.+.. .+.|+.. ..+.+. .....+.+.+|+.+.|.|.. .++|.+.+.|..++.+-. .....
T Consensus 112 YqC~AsN~~Gta~S~~~~l~~~----~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~ 187 (1051)
T KOG3513|consen 112 YQCFASNKLGTAVSREARLQFG----FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRV 187 (1051)
T ss_pred eEEEeecccceeeccceeeccc----ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCccee
Confidence 99999999997654 4445443 233333 45567899999999999998 457888999998654421 12344
Q ss_pred EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE---EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCe
Q psy2775 161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE---SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS 237 (785)
Q Consensus 161 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 237 (785)
..+....|.|.++..+|.+.|.|.|.+...... .-+.|++.... .....+|.
T Consensus 188 ~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~-------------------------~~~~~~P~ 242 (1051)
T KOG3513|consen 188 FSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNN-------------------------VMREYAPK 242 (1051)
T ss_pred EecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccc-------------------------cccccCCc
Confidence 445566899999999999999999988432211 12444442111 11124455
Q ss_pred eeecCC-cceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEE
Q psy2775 238 ILEPLH-DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 316 (785)
Q Consensus 238 ~~~~~~-~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~ 316 (785)
+...+. ......|+.+.|.|.+.|+|-|+|.|.|.|......+........+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 243 i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~ 322 (1051)
T KOG3513|consen 243 ILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATH 322 (1051)
T ss_pred cccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccccee
Confidence 555433 5667789999999999999999999999877544455566666779999999999999999999999998888
Q ss_pred EEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCc---EEEEEcCcEEEEEEcCCCCCC
Q psy2775 317 AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKK---VTIEKKGTIRKLLIRNISVHD 392 (785)
Q Consensus 317 ~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~---~~~~~~~~~~~l~i~~~~~~d 392 (785)
...|.|.. +|.+...+.+..+..|+.++|.|.+.+ |.|+++|++||.++....+ +.+. .|. |.|.++...|
T Consensus 323 ~~~v~v~a-~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-~g~---L~is~v~~~d 397 (1051)
T KOG3513|consen 323 SGHVTVYA-PPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-DGT---LIISNVQESD 397 (1051)
T ss_pred eEEEEEec-CchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-CCE---EEEEeccccc
Confidence 88898885 677888889999999999999999998 8899999999999987665 5443 343 9999999999
Q ss_pred ceEEEEEEeccce----EEEEEEEecCCcccccCCC--eEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEE
Q psy2775 393 EGEYTCSLPDQET----SAELNVVELPPEISVPLQD--VKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSI 465 (785)
Q Consensus 393 ~G~Y~C~a~n~~~----~~~~~v~~~~~~~~~~~~~--~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~ 465 (785)
+|.|+|.|.|..+ .+.+.|+..+|.+...+.. ..+..|.++.|.|...+ |.|.++|.|++..+..+.++.+..
T Consensus 398 sg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e 477 (1051)
T KOG3513|consen 398 SGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE 477 (1051)
T ss_pred CeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC
Confidence 9999999999755 6688899887777766544 36778999999999998 889999999999778889999988
Q ss_pred eCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeec
Q psy2775 466 DGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNL 544 (785)
Q Consensus 466 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 544 (785)
+| +|.|.+++.+|+|.|+|.|.|. |.....+.|.|+.+
T Consensus 478 dG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~-------------------------------------- 516 (1051)
T KOG3513|consen 478 DG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDA-------------------------------------- 516 (1051)
T ss_pred CC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecC--------------------------------------
Confidence 88 7999999999999999999998 99999999999987
Q ss_pred ccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCC---CCeeEEeeCCeEEEEEc
Q psy2775 545 FIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKREIFDGENIILELK 619 (785)
Q Consensus 545 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~---~~~~~~~~~~~~~L~i~ 619 (785)
+.|+..++...+..|+.++|.|.+.-.|.. .|.|.+||..+... ..+.+....+.+.|+|.
T Consensus 517 --------------tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~ 582 (1051)
T KOG3513|consen 517 --------------TRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIA 582 (1051)
T ss_pred --------------ceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEE
Confidence 556666677889999999999999866554 79999999987543 22333332333679999
Q ss_pred cCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCC
Q psy2775 620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659 (785)
Q Consensus 620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~ 659 (785)
+++. +|+|.|.|+|.-..-+..+.+.+.|..+..|++.+
T Consensus 583 nv~l-~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v 621 (1051)
T KOG3513|consen 583 NVSL-EDSGKYTCVAQTALDSASARADLLVRGPPGPPPDV 621 (1051)
T ss_pred eecc-ccCceEEEEEEEeecchhcccceEEecCCCCCCce
Confidence 9999 99999999999988888888888887554444434
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.3e-56 Score=479.40 Aligned_cols=502 Identities=24% Similarity=0.330 Sum_probs=389.5
Q ss_pred cEEEEEEEeccCCCeEEEeECCEEcccce---EEEeCCEEEEEEcccC-CCCcEEEEEEEEcCCeeEEEE-EEEEeecCC
Q psy2775 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQ---ITSEKNTHTLTLIQCS-TKDKGRYSVKVTNKEGTVESA-ANLNVDPYE 204 (785)
Q Consensus 130 ~v~l~C~~~g~p~~~v~W~~~g~~~~~~~---~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~ 204 (785)
.+.|.|.+.|+|.|+++|++||..+.... .... ..+|.|.+.. ..|.|.|+|.|+|..|...+. +.|.....+
T Consensus 59 ~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~ 136 (1051)
T KOG3513|consen 59 SVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIP 136 (1051)
T ss_pred cEEEEEEecCCCCceeEEEECCeecccccccceeee--cCceEecCCcchhhcceeEEEeecccceeeccceeecccccc
Confidence 49999999999999999999999875432 2222 4468888777 899999999999999976553 555554222
Q ss_pred CCCCCCCCCCCCCccccccceeeecCCCCCCCeee-ecCCcceeCCCCeEEEEEEE-ccCCCCeEEEEECCEEcc---cc
Q psy2775 205 PKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DR 279 (785)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~G~~~~l~C~~-~g~p~~~v~W~~~~~~l~---~~ 279 (785)
.|. .......+.+|+.+.|.|.. .++|.+.+.|..+...-. ..
T Consensus 137 --------------------------------~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~ 184 (1051)
T KOG3513|consen 137 --------------------------------KFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDN 184 (1051)
T ss_pred --------------------------------cCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCc
Confidence 111 23346788899999999987 567888999998654322 33
Q ss_pred eEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce---EEEEEEEEe------ccccceee-eccceeEeeCccEEEEEE
Q psy2775 280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV---ESAANLNVD------QGKAEFIK-KLDDLEVKERENAVLEVE 349 (785)
Q Consensus 280 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~---~~~~~l~v~------~~~~~~~~-~~~~~~~~~g~~~~l~C~ 349 (785)
..........|.|.++..+|.+.|.|.|.+..-.. ...+.|.+. ..+|.+.. .+.......|+.+.|.|.
T Consensus 185 ~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECf 264 (1051)
T KOG3513|consen 185 RRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECF 264 (1051)
T ss_pred ceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEE
Confidence 34445566789999999999999999999853221 222555552 22333333 234567789999999999
Q ss_pred EcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEeccceEEEEE---EEecCCcccccCCCe
Q psy2775 350 VTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELN---VVELPPEISVPLQDV 425 (785)
Q Consensus 350 ~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~~~~~~~---v~~~~~~~~~~~~~~ 425 (785)
+.+ |-|+++|+|.+.... ..+......+. .|.|.++..+|+|.|+|.|.|..|..... .+..+|.+...+.+.
T Consensus 265 A~G~P~P~i~W~k~~g~~~-~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~ 341 (1051)
T KOG3513|consen 265 ALGNPTPQIKWRKVDGKPP-PRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDT 341 (1051)
T ss_pred ecCCCCCcEEEEeCCCCCC-Ccceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhccccee
Confidence 998 789999999887532 22333333333 49999999999999999999987755433 256788888899999
Q ss_pred EEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCC---EEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEE
Q psy2775 426 KVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKAT 500 (785)
Q Consensus 426 ~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~ 500 (785)
.+..|++++|.|.+.+ |.|.|+|++||.++....+ ..+..+ .|+|.+++..|+|.|+|.|+|. |..-+++.
T Consensus 342 ~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~ 417 (1051)
T KOG3513|consen 342 EADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIYANAE 417 (1051)
T ss_pred EecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEeeeeE
Confidence 9999999999999999 8999999999999986665 554332 6999999999999999999998 99999999
Q ss_pred EEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeee--eeeeeecCeEEE
Q psy2775 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE--EKTVKEKGTIRL 578 (785)
Q Consensus 501 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~l 578 (785)
|.|.... |.|...+. ...+..|.++.|
T Consensus 418 L~V~a~~---------------------------------------------------P~f~~~p~~~~~~a~~g~~v~i 446 (1051)
T KOG3513|consen 418 LKVLASA---------------------------------------------------PVFPLNPVERKVMAVVGGTVTI 446 (1051)
T ss_pred EEEEccC---------------------------------------------------CCCCCCccceEEEEEeCCeEEE
Confidence 9999874 22222222 236788999999
Q ss_pred EEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCC
Q psy2775 579 MAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658 (785)
Q Consensus 579 ~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~ 658 (785)
.|...|.|.|.++|.|++..+.++.++.+..+| +|.|.+++. +|+|.|+|.|+|..|.+..++.|.|+
T Consensus 447 ~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~-~DaG~YtC~A~N~~G~a~~~~~L~Vk-------- 514 (1051)
T KOG3513|consen 447 DCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTR-SDAGKYTCVAENKLGKAESTGNLIVK-------- 514 (1051)
T ss_pred eeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCc-ccCcEEEEEEEcccCccceEEEEEEe--------
Confidence 999999999999999999977777766554433 599999999 99999999999999999999999998
Q ss_pred CccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEee
Q psy2775 659 INSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIV 736 (785)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~ 736 (785)
.+++|.. .+....+..|+.++|+|.+.-.|.. .|.|.+||..+.
T Consensus 515 ---------------------------------d~tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id 560 (1051)
T KOG3513|consen 515 ---------------------------------DATRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPID 560 (1051)
T ss_pred ---------------------------------cCceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhh
Confidence 6777776 6777789999999999998766644 789999999876
Q ss_pred ecc---ccccchh-hhcccccceeeeeeceEEEEEEe
Q psy2775 737 PSK---RVKGKAE-FIKKLDDLEVKERENAVLEVEVT 769 (785)
Q Consensus 737 ~~~---~~~~~~~-~~~~l~~~~v~~~~~~~~~c~~~ 769 (785)
... ++.+... -...|++..+...|+|.|.|.+.
T Consensus 561 ~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aq 597 (1051)
T KOG3513|consen 561 FNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQ 597 (1051)
T ss_pred ccCCCCceEEeCCcCccceEEEeeccccCceEEEEEE
Confidence 543 2222111 00358899999999999999985
No 3
>KOG4221|consensus
Probab=100.00 E-value=1e-42 Score=371.13 Aligned_cols=546 Identities=22% Similarity=0.283 Sum_probs=396.7
Q ss_pred cccccccCCCCeeeecCCceEecCCCeEEEEEEEEec--CCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcc
Q psy2775 3 SLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKS 78 (785)
Q Consensus 3 s~~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 78 (785)
++.++-...+-.|..+|++. .+|.++.|.|..... +.+.|.|.+||..+... ++.....++ .|.|.+
T Consensus 32 ~~~~~~~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg-------Sl~i~~ 102 (1381)
T KOG4221|consen 32 TGKSIQANTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG-------SLYISS 102 (1381)
T ss_pred chhhhhccCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC-------ceeEee
Confidence 34445556777888888844 999999999998433 47899999999876543 333222232 266666
Q ss_pred cCC-----CCCeEEEEEEEcC-Cee-EEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECC
Q psy2775 79 IKK-----REEGVYTVVAKNR-EGE-AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 151 (785)
Q Consensus 79 ~~~-----~D~G~Y~C~a~~~-~~~-~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g 151 (785)
+.. -|+|.|+|.|.-. .|. .+..+.|.+. ..+.+.....+..+..|+++.|.|.+.+.|.+.+.|.+|.
T Consensus 103 v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a----~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~ 178 (1381)
T KOG4221|consen 103 VLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALA----GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKND 178 (1381)
T ss_pred ecccccccccCceEEEEEEccccceeecceEEEEec----ccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccc
Confidence 655 7899999999865 343 3445666665 5667777778899999999999999999888899999999
Q ss_pred EEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE-EEEEEEeecCCCCCCCCCCCCCCCccccccceeeecC
Q psy2775 152 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE-SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT 230 (785)
Q Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (785)
.++..........+..|.|.++...|.|.|+|.|.+...+.. ..+.|+|..-+..
T Consensus 179 ~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~------------------------ 234 (1381)
T KOG4221|consen 179 QPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA------------------------ 234 (1381)
T ss_pred ccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc------------------------
Confidence 977765555555566899999999999999999998875433 3477887621100
Q ss_pred CCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc-cceEEEeCCEEEEEEccCCCCCCeEEEEEEEe
Q psy2775 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 309 (785)
Q Consensus 231 ~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n 309 (785)
-..-.|+..+....+.+|+.+.|.|.+.|.|.|.|+|.|||..+. +.......+...|.|.+++.+|+|.|+|+|+|
T Consensus 235 --~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 235 --LNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred --ccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence 011235666778889999999999999999999999999999887 32333334466899999999999999999999
Q ss_pred CCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCC
Q psy2775 310 KEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388 (785)
Q Consensus 310 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~ 388 (785)
......+++.|+|.. +|.|...+......++.++.|.|.+.+ |-+.+.|+|+|..+..++.+.+..++. |.|..+
T Consensus 313 ~~D~idasaev~V~a-~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi 388 (1381)
T KOG4221|consen 313 TNDSIDASAEVTVLA-PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGI 388 (1381)
T ss_pred CCcccccceEEEEEc-CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEE
Confidence 877788889999997 488888888888999999999999988 678999999999988877777777776 778888
Q ss_pred CCCCceEEEEEEeccceEEE----EEEEecCC-----cccccCCCeEEecCCcEEEEEEEe------CCCceEEEEECCE
Q psy2775 389 SVHDEGEYTCSLPDQETSAE----LNVVELPP-----EISVPLQDVKVSRDEKASFEIELT------KGDALVKWYKDGK 453 (785)
Q Consensus 389 ~~~d~G~Y~C~a~n~~~~~~----~~v~~~~~-----~~~~~~~~~~v~~g~~~~l~C~~~------~~~~~i~W~~~~~ 453 (785)
-..|.|.|.|.+.|..+.+. +.++..+. .+...+.++.+..-+..-+.|++. ++.+.++|+....
T Consensus 389 ~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~ 468 (1381)
T KOG4221|consen 389 VKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVE 468 (1381)
T ss_pred ecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecC
Confidence 88899999999999776553 32322111 111122333344444555566655 2345688876433
Q ss_pred EcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEe
Q psy2775 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532 (785)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (785)
..........+..| -.+++.++...-...++|.|.|. |....++.|.|..++. .|
T Consensus 469 ~~~rer~~~tss~g--~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE-----gp----------------- 524 (1381)
T KOG4221|consen 469 GDVRERLQNTSSPG--IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE-----GP----------------- 524 (1381)
T ss_pred CchhhhheeccCCc--eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC-----CC-----------------
Confidence 22222222222222 34566666655444455556676 8899999999998752 00
Q ss_pred cCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC----ceEEEeCCEEecCCCCeeEE
Q psy2775 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLLSSPKKREI 608 (785)
Q Consensus 533 ~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~~~~i~~~~~~~~~ 608 (785)
.. +..+..--++|.+...|++ .|+|||..-... +......
T Consensus 525 ----------------------------------~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~ 568 (1381)
T KOG4221|consen 525 ----------------------------------VQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKELR 568 (1381)
T ss_pred ----------------------------------cc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCceEE
Confidence 11 3344555677888878777 799999766554 3344555
Q ss_pred eeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEee
Q psy2775 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652 (785)
Q Consensus 609 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 652 (785)
.+.....++|..+.. .+.-.|+|+|.|.+|...++..|.|.-.
T Consensus 569 ~~~n~~e~ti~gL~k-~TeY~~~vvA~N~~G~g~sS~~i~V~Tl 611 (1381)
T KOG4221|consen 569 VENNATEYTINGLEK-YTEYSIRVVAYNSAGSGVSSADITVRTL 611 (1381)
T ss_pred EecCccEEEeecCCC-ccceEEEEEEecCCCCCCCCCceEEEec
Confidence 666777899999999 9999999999999999999988888743
No 4
>KOG4222|consensus
Probab=100.00 E-value=1.2e-42 Score=368.37 Aligned_cols=457 Identities=27% Similarity=0.425 Sum_probs=357.7
Q ss_pred cccccCCCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccC----CCCEEEeecCCccceEEEEEEcc--
Q psy2775 5 ADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQE----TDEVVFSDQSDMHSYVSIVTIKS-- 78 (785)
Q Consensus 5 ~~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~-- 78 (785)
+..-...||+|+.-|.++.|..|+.++|.|.++|.|+|+|+|||+|..... +.++.+.. +.. ..|++.+
T Consensus 24 ~~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~-gsL----f~l~~ahg~ 98 (1281)
T KOG4222|consen 24 SLRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPD-GSL----FLLRLAHGK 98 (1281)
T ss_pred ccccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCC-ccE----EEEecccCC
Confidence 344567899999999999999999999999999999999999999964322 22222221 111 1133221
Q ss_pred cCCCCCeEEEEEEEcCCeeEEE-EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEccc
Q psy2775 79 IKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD 156 (785)
Q Consensus 79 ~~~~D~G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~ 156 (785)
....|.|.|.|+|+|..|...+ ...|.+.. .+-.+...+..+.+..|+.+.|.|.- .|.|.+.+.|.|||.++..
T Consensus 99 ~a~~d~G~y~cvasn~~g~avSr~a~L~vav---lrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~ 175 (1281)
T KOG4222|consen 99 KAGHDHGVYSCVASNRLGEAVSRGASLIVAV---LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH 175 (1281)
T ss_pred cccCCCceeEeeecCccceeeecCceEEEEE---echhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc
Confidence 1223999999999999886543 34455443 23345566677888899999999986 6789999999999999873
Q ss_pred c--eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCC
Q psy2775 157 R--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233 (785)
Q Consensus 157 ~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (785)
. .+...-....|.|.+++..|.|.|.|.+.|..|..++. +.|.|.
T Consensus 176 ~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-------------------------------- 223 (1281)
T KOG4222|consen 176 YDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-------------------------------- 223 (1281)
T ss_pred ccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec--------------------------------
Confidence 3 33333334479999999999999999999999987765 788887
Q ss_pred CCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCc
Q psy2775 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 313 (785)
Q Consensus 234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~ 313 (785)
.+|.+...+....+..|..+.+.|.+.|.|.+++.|.+++..+...+......+.+|.|.+++..|.|.|.|.+.|..|.
T Consensus 224 e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~ 303 (1281)
T KOG4222|consen 224 EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGG 303 (1281)
T ss_pred cCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccc
Confidence 44678888888999999999999999999999999999888887555555555669999999999999999999999999
Q ss_pred eEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEEc--------CCCCcEEEEEcCcEEEEE
Q psy2775 314 VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQEI--------KTSKKVTIEKKGTIRKLL 384 (785)
Q Consensus 314 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~l--------~~~~~~~~~~~~~~~~l~ 384 (785)
...+..++|.. ++.|...+.+..+..|..++|.|.+.+ |++.+.|.+.|... ..+.+..+...+. |+
T Consensus 304 l~asa~ltV~a-pP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~---L~ 379 (1281)
T KOG4222|consen 304 LEASATLTVQA-PPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGT---LT 379 (1281)
T ss_pred cccccceEEec-CcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCC---cc
Confidence 99999999996 788888888899999999999999987 78899999876432 1122555555564 99
Q ss_pred EcCCCCCCceEEEEEEeccceE----EEEEE-----E-ecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCE
Q psy2775 385 IRNISVHDEGEYTCSLPDQETS----AELNV-----V-ELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGK 453 (785)
Q Consensus 385 i~~~~~~d~G~Y~C~a~n~~~~----~~~~v-----~-~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~ 453 (785)
|.++...|.|.|.|...+..++ +.+.+ . ..|+.|...+.+..+.++..+.|.|.+.+ +.+.+.|++++-
T Consensus 380 it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~ 459 (1281)
T KOG4222|consen 380 ITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGC 459 (1281)
T ss_pred cccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhccc
Confidence 9999999999999996553221 11221 1 24566666777788888999999999998 789999999988
Q ss_pred EcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCc
Q psy2775 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPA 507 (785)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~ 507 (785)
.+...+....... ...|+|.+....|.|.|+|.|.+. |...-++.|+|...-
T Consensus 460 ~v~~~d~~~s~~~--~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~ 512 (1281)
T KOG4222|consen 460 NVMNPDSRISQQE--IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAG 512 (1281)
T ss_pred ccccCCcccceee--eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcC
Confidence 7755442222211 247999999999999999999997 888889999998764
No 5
>KOG4221|consensus
Probab=100.00 E-value=7.3e-39 Score=341.78 Aligned_cols=524 Identities=21% Similarity=0.291 Sum_probs=363.5
Q ss_pred ccCCcEEEEEEEec--cCCCeEEEeECCEEcccc--eEEEeCCEEEEEEcccCC-----CCcEEEEEEEEcC-CeeE-EE
Q psy2775 126 TEGESAVLSVQVGG--EPSPKVEWYKDGKLIKDR--QITSEKNTHTLTLIQCST-----KDKGRYSVKVTNK-EGTV-ES 194 (785)
Q Consensus 126 ~~G~~v~l~C~~~g--~p~~~v~W~~~g~~~~~~--~~~~~~~~~~L~i~~~~~-----~d~G~Y~C~a~n~-~g~~-~~ 194 (785)
.+|..+.|.|.... .+.+.|.|.+||..+... .....-.+.+|.|.++.. -+.|.|+|.|.-. .|.. +.
T Consensus 52 ~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr 131 (1381)
T KOG4221|consen 52 MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSR 131 (1381)
T ss_pred ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecc
Confidence 78999999999743 246799999999887643 112222334677776665 8899999999865 3333 33
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCE
Q psy2775 195 AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK 274 (785)
Q Consensus 195 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~ 274 (785)
.+.|.+.. .+.+...+.+..+..|+.+.|.|.+.+.|.+.+.|.+++.
T Consensus 132 ~a~v~~a~--------------------------------~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~ 179 (1381)
T KOG4221|consen 132 TAKVALAG--------------------------------LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ 179 (1381)
T ss_pred eEEEEecc--------------------------------cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccc
Confidence 45555542 2345566667889999999999999999989999999998
Q ss_pred EcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCce-EEEEEEEEeccc-----cceeeeccceeEeeCccEEEEE
Q psy2775 275 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV-ESAANLNVDQGK-----AEFIKKLDDLEVKERENAVLEV 348 (785)
Q Consensus 275 ~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~-----~~~~~~~~~~~~~~g~~~~l~C 348 (785)
++.............|.|.++.+.|.|.|+|.+++..... +..+.|+|...+ ..|...+....+.+|+++.|.|
T Consensus 180 pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 180 PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence 7773223344445689999999999999999999875433 334677776222 2255667778899999999999
Q ss_pred EEcC-CCCeEEEEECCEEcCCCC-cEEEEEcCcEEEEEEcCCCCCCceEEEEEEec--c--ceEEEEEEEecCCcccccC
Q psy2775 349 EVTS-DKADVKWFKDGQEIKTSK-KVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD--Q--ETSAELNVVELPPEISVPL 422 (785)
Q Consensus 349 ~~~~-~~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n--~--~~~~~~~v~~~~~~~~~~~ 422 (785)
.+.+ +.|.++|.+||..+..+. ++.....+. |.|.+++..|+|.|+|+|.| + ...+++.|.. ||.+...+
T Consensus 260 vvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~s---lliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a-~P~~~~~p 335 (1381)
T KOG4221|consen 260 VVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSS---LLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA-PPGFTKAP 335 (1381)
T ss_pred EecCCCCCceEEeeCCeeeeecceEEEEecccc---eEEeccccccCceEEEEecCCCcccccceEEEEEc-CCCCCCCC
Confidence 9998 789999999999998766 333333333 99999999999999999998 3 3455666665 58888888
Q ss_pred CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEE
Q psy2775 423 QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKAT 500 (785)
Q Consensus 423 ~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~ 500 (785)
......++.++.|.|.+.+ +.+.+.|+|||..+..++.+++..+++ |.|..+-..|.|.|+|.+.|. |.....+.
T Consensus 336 ~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~ 412 (1381)
T KOG4221|consen 336 TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQ 412 (1381)
T ss_pred cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhh
Confidence 8888999999999999998 788999999999988888888776664 888888889999999999998 88888888
Q ss_pred EEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEE
Q psy2775 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMA 580 (785)
Q Consensus 501 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C 580 (785)
|.|...+.. +. ....+.+++.++..+.......- +....|
T Consensus 413 l~vv~~p~~-----~~----------------------------------s~~~~sap~~lv~~~~~srfi~~-tw~~p~ 452 (1381)
T KOG4221|consen 413 LEVVPQPAS-----AS----------------------------------SDLLPSAPRDLVANLVSSRFIQL-TWRPPA 452 (1381)
T ss_pred heeccCCcc-----cc----------------------------------cCccccCCcceecccccceeEEE-eecCcc
Confidence 866544211 00 00001111222222211111111 112556
Q ss_pred EEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCc
Q psy2775 581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660 (785)
Q Consensus 581 ~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~ 660 (785)
..+.+.+.++||+....... .+.......+ ..+.+.++.. .-.-.+.|.|.|..|....++.|.|.-
T Consensus 453 -~~~g~i~~~~v~~~~~~~~r-er~~~tss~g-~~~tv~nl~p-~t~Y~~rv~A~n~~g~g~sS~pLkV~t--------- 519 (1381)
T KOG4221|consen 453 -QISGNISTYTVFYKVEGDVR-ERLQNTSSPG-IQVTVQNLSP-LTMYFFRVRAKNEAGSGESSAPLKVTT--------- 519 (1381)
T ss_pred -ccCCCcceEEEEEecCCchh-hhheeccCCc-eEEEeeeccc-ceeEEEEEeccCcccCCccCCceEEec---------
Confidence 55567788999874432211 1222222223 5577777755 433444566679999999999999982
Q ss_pred cccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC----ceEEeECCEEee
Q psy2775 661 SIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP----KAEWTVNGTVIV 736 (785)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p----~i~W~~~~~~~~ 736 (785)
+|. .+ .....+.+.-+.|.+.+.|++ .|.||+..-...
T Consensus 520 --------------------------------~pE----gp--~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~ 561 (1381)
T KOG4221|consen 520 --------------------------------QPE----GP--VQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED 561 (1381)
T ss_pred --------------------------------CCC----CC--ccccccccCcceEEEEecCCCCCCCCceEEEEEEEcC
Confidence 222 01 114456777889999999988 899998765544
Q ss_pred -eccccccchhhhcccccceeeeeeceEEEEEEec--------ccceeEEeec
Q psy2775 737 -PSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTS--------DKADVKWFKN 780 (785)
Q Consensus 737 -~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~--------~~~~~~w~~~ 780 (785)
.+....+.. -...+++..++......|.|.+.+ ..+.|.|.-+
T Consensus 562 ~~~~~~~~~~-n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd 613 (1381)
T KOG4221|consen 562 DTGKELRVEN-NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSD 613 (1381)
T ss_pred CCCceEEEec-CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccC
Confidence 111111111 112566777778888899998863 4457777654
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.6e-40 Score=352.33 Aligned_cols=445 Identities=25% Similarity=0.412 Sum_probs=347.0
Q ss_pred CCCeeeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcc-----cceEEEeCCEEEEEEccC-----CCCCCeEE
Q psy2775 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTHTLTLIQC-----STKDKGRY 303 (785)
Q Consensus 234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~-----~~~~~~~~~~~~l~i~~~-----~~~d~G~Y 303 (785)
.+|.|+.++....+..|+.++|.|.+.|.|+|+|+|+|+|.... ..++..-.+ +|.+..+ ...|.|.|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~g--sLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDG--SLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCc--cEEEEecccCCcccCCCcee
Confidence 57899999999999999999999999999999999999996544 222222222 2333221 22389999
Q ss_pred EEEEEeCCCceEE-EEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCC--CCcEEEEEcC
Q psy2775 304 SVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKT--SKKVTIEKKG 378 (785)
Q Consensus 304 ~C~~~n~~g~~~~-~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~--~~~~~~~~~~ 378 (785)
+|.+.|..|...+ ...|.+......|...+....+..|+.+.|.|.-.. +.+.+.|.|+|+++.. ...+.+...|
T Consensus 108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG 187 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG 187 (1281)
T ss_pred EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC
Confidence 9999999887654 366776666677777777788889999999998754 5789999999999873 3355556666
Q ss_pred cEEEEEEcCCCCCCceEEEEEEeccce-----EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECC
Q psy2775 379 TIRKLLIRNISVHDEGEYTCSLPDQET-----SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDG 452 (785)
Q Consensus 379 ~~~~l~i~~~~~~d~G~Y~C~a~n~~~-----~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~ 452 (785)
. |.|.+++..|.|.|.|.+.|..+ .++++|.+ +|.+..++.+..+..|..+.+.|.+.+ |.|.+.|.+++
T Consensus 188 ~---LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e-~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~ 263 (1281)
T KOG4222|consen 188 N---LLISNVRKSDEGTYACVATNMVGERESIPARLSVQE-KPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDD 263 (1281)
T ss_pred c---EEEeccccCCCceeeeeecccccccccccceeeecc-CCccccccccceeecccccccccccCCCCCCceeeeccC
Confidence 6 99999999999999999998544 34455544 678888889999999999999999998 78899999977
Q ss_pred EEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEE
Q psy2775 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531 (785)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (785)
..++. .++.+..+. .+|.|..++..|.|.|.|.|.|. |+...++.|+|+++
T Consensus 264 ~~~P~-~ry~i~~d~--qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap------------------------- 315 (1281)
T KOG4222|consen 264 PSLPR-SRYSILDDT--QTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP------------------------- 315 (1281)
T ss_pred CCCCc-cceeeeecc--ccccccccCCCcccceeeeccccccccccccceEEecC-------------------------
Confidence 76644 345555443 47999999999999999999998 99999999999987
Q ss_pred ecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC------CCe
Q psy2775 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS------PKK 605 (785)
Q Consensus 532 ~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~------~~~ 605 (785)
|.|...+.++++..|..++|.|.+.|+|.|.+.|.|.|....-. .+.
T Consensus 316 ---------------------------P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~ 368 (1281)
T KOG4222|consen 316 ---------------------------PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNG 368 (1281)
T ss_pred ---------------------------cccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCc
Confidence 66666677889999999999999999999999999987643211 111
Q ss_pred eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeee
Q psy2775 606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685 (785)
Q Consensus 606 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (785)
+-.. ....+|+|.+++. .|.|.|.|...+..|+...-+.+.+...-
T Consensus 369 r~sv-s~~g~L~it~v~~-~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~-------------------------------- 414 (1281)
T KOG4222|consen 369 RGSV-SPTGTLTITNVRQ-SDEGYYVCQTQTSAGSSLTKAYLEQTDVL-------------------------------- 414 (1281)
T ss_pred ccee-cCCCCcccccccc-cccceEeecccccccccccceeEEEEeee--------------------------------
Confidence 1111 1223799999999 99999999999999988777666664211
Q ss_pred ecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCCceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEE
Q psy2775 686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLE 765 (785)
Q Consensus 686 ~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~ 765 (785)
.-..||-+......+.+..+|.++.|-|.++|.|.|.+.|+++|-.+...+..... -.+..|++......|.|.|+
T Consensus 415 ---~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~-~~~~~l~i~dl~~~DtG~YT 490 (1281)
T KOG4222|consen 415 ---TDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ-QEIGSLRIRDLKGPDTGRYT 490 (1281)
T ss_pred ---ccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce-eeeceeeeeeeecCCCccee
Confidence 11023333344666677778999999999999999999999999988887743333 23346888888999999999
Q ss_pred EEEecccceeEE
Q psy2775 766 VEVTSDKADVKW 777 (785)
Q Consensus 766 c~~~~~~~~~~w 777 (785)
|..+....+-.|
T Consensus 491 c~as~~~ges~w 502 (1281)
T KOG4222|consen 491 CIASDESGESTW 502 (1281)
T ss_pred eeccCccccccc
Confidence 999987766666
No 7
>KOG4194|consensus
Probab=99.97 E-value=1.3e-30 Score=259.33 Aligned_cols=306 Identities=24% Similarity=0.377 Sum_probs=236.2
Q ss_pred CCCCeeeecCCceEecCCCeEEEEEEEEe--cCCCeeEEEECCEEccCCC---CEEEeec------CCccceEEEEEEcc
Q psy2775 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVA--VPEPDLLWYYNGEPLQETD---EVVFSDQ------SDMHSYVSIVTIKS 78 (785)
Q Consensus 10 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~g--~p~~~i~W~~~~~~~~~~~---~~~~~~~------~~~~~~~~~L~i~~ 78 (785)
-..|+|...|..+....|.+++|+|.+.+ ..+.++.|.+++.....-. ...+... +....+.+.|++.+
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 35688999999999999999999999966 3557899999886432211 1111111 22233567899999
Q ss_pred cCCCCCeEEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEE-ccc
Q psy2775 79 IKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL-IKD 156 (785)
Q Consensus 79 ~~~~D~G~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~-~~~ 156 (785)
|...|+|.|+|+++|..|+.. ..++++|. ..|.+...+.+.++..|+...|.|.++|.|.|+|.|.|+|.. .+.
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~----~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA 656 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVN----QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA 656 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEee----ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence 999999999999999999754 46778887 689999999999999999999999999999999999998765 443
Q ss_pred c---eEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCC
Q psy2775 157 R---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233 (785)
Q Consensus 157 ~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (785)
. .+..-.....+.|.+++.+|+|.|+|.|.|.+|..+.+++|.|.+.
T Consensus 657 A~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~------------------------------ 706 (873)
T KOG4194|consen 657 ARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET------------------------------ 706 (873)
T ss_pred hhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecC------------------------------
Confidence 2 2222233446889999999999999999999999999999999843
Q ss_pred CCCeeeecCCcceeCCCCeEEEEEEEccCCC-CeEEEEECCEEcc-cceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy2775 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 311 (785)
Q Consensus 234 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-~~v~W~~~~~~l~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~ 311 (785)
|.+..++.+..+..|+.+.|.|.+.+.|+ |...|+|+++++. ..+....+++..|.+.+...+|.|.|+|.+.|..
T Consensus 707 --p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~ 784 (873)
T KOG4194|consen 707 --PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTL 784 (873)
T ss_pred --CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeec
Confidence 55666777889999999999999999887 8999999998876 3334455667789999999999999999999998
Q ss_pred CceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEc
Q psy2775 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT 351 (785)
Q Consensus 312 g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 351 (785)
|.......+.+...+......-....+....-+.+.|.+.
T Consensus 785 ~~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~vd 824 (873)
T KOG4194|consen 785 GTERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSVD 824 (873)
T ss_pred cceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeeec
Confidence 8877777766665444333221112233333444556554
No 8
>KOG4194|consensus
Probab=99.96 E-value=2.9e-29 Score=249.82 Aligned_cols=266 Identities=21% Similarity=0.307 Sum_probs=206.9
Q ss_pred CCcccccCCCeEEecCCcEEEEEEEeCC---CceEEEEECCEEcccCC-----CEEEE--------EeCcEEEEEEccCC
Q psy2775 415 PPEISVPLQDVKVSRDEKASFEIELTKG---DALVKWYKDGKEIAFSE-----NVTLS--------IDGKKQKLIIFSAG 478 (785)
Q Consensus 415 ~~~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~i~W~~~~~~~~~~~-----~~~~~--------~~~~~~~L~i~~~~ 478 (785)
.|.|...|.+.....|+.++|+|.+.++ +..+.|.++++..+..+ .+... .......|.+.+++
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 4666677777778899999999999883 45799999876332211 11000 01125689999999
Q ss_pred CCCcEEEEEEEeec-Ccc-eeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCC
Q psy2775 479 LEDAGEYSCRVGDT-GDK-ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG 556 (785)
Q Consensus 479 ~~d~G~Y~C~a~n~-g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 556 (785)
..|.|.|+|+++|. |+. +..+.|+|...
T Consensus 583 ~td~grYQCVvtN~FGStysqk~KltV~~~-------------------------------------------------- 612 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQA-------------------------------------------------- 612 (873)
T ss_pred cccCceEEEEEecccCcchhheeEEEeecc--------------------------------------------------
Confidence 99999999999998 654 44577887764
Q ss_pred CCCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEE-ecCC--CCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP-LLSS--PKKREIFDGENIILELKEADSETDAGDYKVV 633 (785)
Q Consensus 557 ~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-i~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~ 633 (785)
|.|...+.+.++..|+.++|.|.|+|.|.|+|.|-|+|.+ .+.. .|.+++.+++ .+.|.++.. +|+|.|+|+
T Consensus 613 --PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~-eD~GiYtC~ 687 (873)
T KOG4194|consen 613 --PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKI-EDQGIYTCT 687 (873)
T ss_pred --CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccc-cccceeEEe
Confidence 7777778899999999999999999999999999998765 4332 2334444444 388999999 999999999
Q ss_pred EEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEE
Q psy2775 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK 713 (785)
Q Consensus 634 a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~ 713 (785)
|.|.+|....+++|.|. ..|.+.. +..+..+..|+++.
T Consensus 688 A~n~AG~isanAtL~V~-----------------------------------------e~p~f~~-PL~~~~V~~get~v 725 (873)
T KOG4194|consen 688 AQNVAGQISANATLTVL-----------------------------------------ETPSFSI-PLEDQLVVVGETLV 725 (873)
T ss_pred eeccccceeeceEEEEe-----------------------------------------cCCcccc-cccceEEEecceEE
Confidence 99999999999999997 3444443 35667788999999
Q ss_pred EEEEEecCCC-CceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEEEeccc--ceeEEe
Q psy2775 714 IEVRFKALPP-PKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWF 778 (785)
Q Consensus 714 l~C~~~g~P~-p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~~~--~~~~w~ 778 (785)
|.|.+.|.|+ |.+.|+|.+++|.-..+...++.-+ -|..++....|.|.|+|+++... --.+|+
T Consensus 726 lqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQ-llvv~~~~~~daG~yTcem~~~~~~~~~~i~ 792 (873)
T KOG4194|consen 726 LQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQ-LLVVKENLVEDAGIYTCEMSNTLGTERIHIC 792 (873)
T ss_pred EEEecCCCCCCccccccCCCCceEEeecccCCCCCe-EEEEEehhhhhcceEEEEEEeeccceeeEEE
Confidence 9999999887 9999999999999988877765433 45566667889999999999733 345554
No 9
>KOG3515|consensus
Probab=99.96 E-value=5.3e-28 Score=254.75 Aligned_cols=595 Identities=15% Similarity=0.161 Sum_probs=364.8
Q ss_pred cccCCCCeeeecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG 85 (785)
Q Consensus 7 ~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 85 (785)
+....+|.....+-+..+++|++|.|.|.+.+.|+ +.+.|++.++.+. .++....+ .+|......++.-+
T Consensus 2 l~~p~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~ 72 (741)
T KOG3515|consen 2 LFPPNVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIAD-------PTLVTTGDVRDTVA 72 (741)
T ss_pred CcCCCCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccccC-------Cceeeecchhhhhh
Confidence 45566777777766669999999999999977654 7899999988766 22222111 34888888888999
Q ss_pred EEEEEEEcCCeeEE-EEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE--eccCCCeEEEeECCEEcccce---E
Q psy2775 86 VYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV--GGEPSPKVEWYKDGKLIKDRQ---I 159 (785)
Q Consensus 86 ~Y~C~a~~~~~~~~-~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~--~g~p~~~v~W~~~g~~~~~~~---~ 159 (785)
.|.|++.|..+... ....+.+. .+|.-...........+..+.+.|.+ .+.|.+.+.|..++....... .
T Consensus 73 ~~~c~a~ns~~~~~~~~~~l~v~----~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~ 148 (741)
T KOG3515|consen 73 ELNCRAFNSVGMPSRCPMILDVD----YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRG 148 (741)
T ss_pred hhhhhhcccccCceecceeeccc----cCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcc
Confidence 99999999855433 23344444 34433333344455678889999966 456778999999876543221 0
Q ss_pred E--------EeCCEEEEEEcccCCCCcEEEEEEEEcCC---eeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeee
Q psy2775 160 T--------SEKNTHTLTLIQCSTKDKGRYSVKVTNKE---GTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228 (785)
Q Consensus 160 ~--------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (785)
. .....+.+.+...+.++.|.|+|.|.+.. +.......+.|....
T Consensus 149 ~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~------------------------ 204 (741)
T KOG3515|consen 149 RVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC------------------------ 204 (741)
T ss_pred cccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc------------------------
Confidence 0 10223457888888999999999999853 333333444443221
Q ss_pred cCCCCCCCeeeecCCcceeCCCCeEEEEEEE-ccCCCCeEEEEECCEEcccc-eEEEeC----CEEEEEEccCCCCCCeE
Q psy2775 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDR-QITSEK----NTHTLTLIQCSTKDKGR 302 (785)
Q Consensus 229 ~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~-~g~p~~~v~W~~~~~~l~~~-~~~~~~----~~~~l~i~~~~~~d~G~ 302 (785)
....+.....-..+.+|+.+.|.|.+ .|+|.+.++|+++...+... ...... ..+.+....-..++...
T Consensus 205 -----~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~ 279 (741)
T KOG3515|consen 205 -----KGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQ 279 (741)
T ss_pred -----ccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhh
Confidence 01111222222567899999999977 56899999999987766532 111111 12234444444445566
Q ss_pred EEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEE--EEcC
Q psy2775 303 YSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTI--EKKG 378 (785)
Q Consensus 303 Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~--~~~~ 378 (785)
..|.+.|. ...+..+.+...+...........+..|....+.|...+ +++.+.|+++............ ...+
T Consensus 280 ~kc~a~n~---~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~ 356 (741)
T KOG3515|consen 280 LKCKASNL---LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMG 356 (741)
T ss_pred hhccccCc---cccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCccc
Confidence 67999982 222233334433333333334445788899999888765 5779999996554433221111 0111
Q ss_pred --cEEEEEEcCCCCCCceEEEEEEeccceE------EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC--CCceEEE
Q psy2775 379 --TIRKLLIRNISVHDEGEYTCSLPDQETS------AELNVVELPPEISVPLQDVKVSRDEKASFEIELTK--GDALVKW 448 (785)
Q Consensus 379 --~~~~l~i~~~~~~d~G~Y~C~a~n~~~~------~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W 448 (785)
....+........|.|.|.|.+.+.... ..+.+...|..+......+...+++.....-.+.+ ..+.+.|
T Consensus 357 ~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w 436 (741)
T KOG3515|consen 357 GVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYW 436 (741)
T ss_pred ceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhh
Confidence 1233667778889999999999875421 12223333333333444455556665554444444 3557999
Q ss_pred EECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCcee
Q psy2775 449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527 (785)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 527 (785)
++.+.++.....-....-.......+.++...|.|.|.|.|+|. |+......+.+...+..
T Consensus 437 ~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~------------------ 498 (741)
T KOG3515|consen 437 TFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHN------------------ 498 (741)
T ss_pred eecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcc------------------
Confidence 99998886655433322222233446678899999999999997 77777777666655321
Q ss_pred EEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecCCCC--ceEEEeCCEEecCCCC-
Q psy2775 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPK- 604 (785)
Q Consensus 528 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~- 604 (785)
...........|+++.+.|..+..|.- .+.|.+.+.+......
T Consensus 499 ----------------------------------~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~ 544 (741)
T KOG3515|consen 499 ----------------------------------HHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQ 544 (741)
T ss_pred ----------------------------------cccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccc
Confidence 111113345667789999999887665 7999998876532211
Q ss_pred -eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceee
Q psy2775 605 -KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTE 683 (785)
Q Consensus 605 -~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (785)
...........+.+..... .-++.|.|.+.|..--+.....+.+.
T Consensus 545 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~pA~~~~~l~~~--------------------------------- 590 (741)
T KOG3515|consen 545 DAPQQQLMAHAQLLVSGNSS-LQASETACVVDGSSPPAGLSLVLKAY--------------------------------- 590 (741)
T ss_pred cccccccCCccceeeccccc-ccccceEEeecCCCCccccceEEEec---------------------------------
Confidence 1111122334566666655 66799999999832223333333332
Q ss_pred eeecCccccCCCcCCCCCCcEEeecCC-eEEEEEEEecCCCCceEEeECCEEeeeccc
Q psy2775 684 VDVEKPVETAPVIDPPPPPEVLVKKGE-DLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740 (785)
Q Consensus 684 ~~~~~~~~~~P~i~~~~~~~~~~~~g~-~~~l~C~~~g~P~p~i~W~~~~~~~~~~~~ 740 (785)
.+|.++...+...+..+|. .++.+|.+.|.|.+.++|.|+......+.+
T Consensus 591 --------s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~ 640 (741)
T KOG3515|consen 591 --------SALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPH 640 (741)
T ss_pred --------ccccccccCCceeeeccCcccccccceecccccceeecccCCCcccCCce
Confidence 3344433222222222222 789999999999999999999877544443
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=4.2e-26 Score=230.67 Aligned_cols=254 Identities=15% Similarity=0.245 Sum_probs=180.2
Q ss_pred CCceEecCCCeEEEEEEE-----EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775 19 TKPVYAEENSEVTLEVRL-----VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~-----~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~ 93 (785)
.....+.+|+.+.|.|.+ .|.|.+++.|+|++... .+......+ +.|.|.++..+|+|.|+|.|.|
T Consensus 33 ~~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g------~~l~i~~~~~~DsG~Y~C~a~N 103 (326)
T PHA02785 33 FASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNG------SNMLILNPTQSDSGIYICITKN 103 (326)
T ss_pred cchhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCC------ceEEEcccCcccCeEEEEEEEC
Confidence 345677789999999996 68888999999997421 122211111 2378999999999999999999
Q ss_pred CCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEE-----EeccCCCeEEEeECCEEcccceEEEeCCEEEE
Q psy2775 94 REGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-----VGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 168 (785)
Q Consensus 94 ~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~-----~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L 168 (785)
..+....++.|.|.... +|.+........+.+|..+.|.|. ..+.|++.++|++++. +....+.. .....|
T Consensus 104 ~~g~~~~s~~L~V~~~~--~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~-~~~~~L 179 (326)
T PHA02785 104 ETYCDMMSLNLTIVSVS--ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQ-RTPGII 179 (326)
T ss_pred CCcceEEEEEEEEEecC--CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEe-cCCCeE
Confidence 99887777878776422 233322233455778999999997 2457888999998653 33222222 223579
Q ss_pred EEcccCCCCcEEEEEEEEcCCeeEEEE----EEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775 169 TLIQCSTKDKGRYSVKVTNKEGTVESA----ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD 244 (785)
Q Consensus 169 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 244 (785)
.|.+++.+|+|.|+|.|.|..|..... +.|.|.... .+|.+. .+..
T Consensus 180 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~-----------------------------~pp~~~-~p~~ 229 (326)
T PHA02785 180 TIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRI-----------------------------IPPTMQ-LPEG 229 (326)
T ss_pred EEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccC-----------------------------CCceec-CCCc
Confidence 999999999999999999988765433 334443211 234433 3356
Q ss_pred ceeCCCCeEEEEEEEccCCC---CeEEEEECCEEcccc------eEEEeC----------CEEEEEEccCCCCCCeEEEE
Q psy2775 245 VSITEGESAVLSVQVGGEPS---PKVEWYKDGKLIKDR------QITSEK----------NTHTLTLIQCSTKDKGRYSV 305 (785)
Q Consensus 245 ~~~~~G~~~~l~C~~~g~p~---~~v~W~~~~~~l~~~------~~~~~~----------~~~~l~i~~~~~~d~G~Y~C 305 (785)
..+..|+.++|.|.+.|.|. +.+.|++||..+... .+.... ....|+|.+++.+|.|.|+|
T Consensus 230 ~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C 309 (326)
T PHA02785 230 VVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTC 309 (326)
T ss_pred EEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEE
Confidence 67778999999999998886 489999999887521 111111 14579999999999999999
Q ss_pred EEEeCCCceE
Q psy2775 306 KVTNKEGTVE 315 (785)
Q Consensus 306 ~~~n~~g~~~ 315 (785)
.|.|..|...
T Consensus 310 ~A~n~~~~~~ 319 (326)
T PHA02785 310 MAFTIPSISK 319 (326)
T ss_pred EEEeccCceE
Confidence 9999874433
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=1.7e-24 Score=218.99 Aligned_cols=242 Identities=19% Similarity=0.240 Sum_probs=172.9
Q ss_pred cceeCCCCeEEEEEEE-----ccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEEE
Q psy2775 244 DVSITEGESAVLSVQV-----GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA 318 (785)
Q Consensus 244 ~~~~~~G~~~~l~C~~-----~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 318 (785)
.....+|+.+.|.|.+ .|.|.+++.|+|+|..... ... ......|.|.++..+|+|.|+|.+.|..|....++
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~-~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIP-IDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEE-ccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 3456689999999996 6888899999999854321 111 22233588999999999999999999999888888
Q ss_pred EEEEecccc-ceeeeccceeEeeCccEEEEEEE------cCCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCC
Q psy2775 319 NLNVDQGKA-EFIKKLDDLEVKERENAVLEVEV------TSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391 (785)
Q Consensus 319 ~l~v~~~~~-~~~~~~~~~~~~~g~~~~l~C~~------~~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~ 391 (785)
.|.|....+ .+.....+..+.+|..+.|.|.. .++++.++|+++.. + ...++....++ .|.|.+++.+
T Consensus 113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~---~L~i~~v~~~ 187 (326)
T PHA02785 113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPG---IITIEDVRKN 187 (326)
T ss_pred EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCC---eEEEeecChh
Confidence 888875432 23223344567789999999962 24678999987643 3 22344443333 4999999999
Q ss_pred CceEEEEEEeccceEEE--------EEEE--ecCCcccccCCCeEEecCCcEEEEEEEeC-CC---ceEEEEECCEEccc
Q psy2775 392 DEGEYTCSLPDQETSAE--------LNVV--ELPPEISVPLQDVKVSRDEKASFEIELTK-GD---ALVKWYKDGKEIAF 457 (785)
Q Consensus 392 d~G~Y~C~a~n~~~~~~--------~~v~--~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~---~~i~W~~~~~~~~~ 457 (785)
|.|.|+|.|.|..+... +.|. ..||.+. .+....+..|+.++|.|.+.+ |. +.+.|++||..+..
T Consensus 188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence 99999999998544322 2222 1344443 345667778999999999997 43 47999999998854
Q ss_pred CC-----CEEEEE-----eC---cEEEEEEccCCCCCcEEEEEEEeecC
Q psy2775 458 SE-----NVTLSI-----DG---KKQKLIIFSAGLEDAGEYSCRVGDTG 493 (785)
Q Consensus 458 ~~-----~~~~~~-----~~---~~~~L~i~~~~~~d~G~Y~C~a~n~g 493 (785)
.+ ++.... +. ....|+|.+++.+|+|.|+|.|.|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~ 315 (326)
T PHA02785 267 DDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIP 315 (326)
T ss_pred cCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEecc
Confidence 32 222111 00 13579999999999999999999974
No 12
>KOG3515|consensus
Probab=99.93 E-value=1.5e-24 Score=228.85 Aligned_cols=496 Identities=17% Similarity=0.177 Sum_probs=307.4
Q ss_pred CCCceecCCCceEeccCCcEEEEEEEeccC-CCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775 112 EKPSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190 (785)
Q Consensus 112 ~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 190 (785)
..|......-...+..|+.|.|.|.+.++| .+.+.|++.+..+... .......+|.......+..+.|.|+|.|..+
T Consensus 6 ~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~ 83 (741)
T KOG3515|consen 6 NVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGR--YATIADPTLVTTGDVRDTVAELNCRAFNSVG 83 (741)
T ss_pred CCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccccc--cccccCCceeeecchhhhhhhhhhhhccccc
Confidence 344443333333788999999999997765 5599999988776522 1122234788888888999999999999855
Q ss_pred eEEE-EEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcceeCCCCeEEEEEEE--ccCCCCeE
Q psy2775 191 TVES-AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV--GGEPSPKV 267 (785)
Q Consensus 191 ~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~~~~l~C~~--~g~p~~~v 267 (785)
.... ...+.|. ++|.-...........+..+.+.|.+ .+.|.+.+
T Consensus 84 ~~~~~~~~l~v~--------------------------------~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nl 131 (741)
T KOG3515|consen 84 MPSRCPMILDVD--------------------------------YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNL 131 (741)
T ss_pred Cceecceeeccc--------------------------------cCccccccccchhhhcCCeEEEEEeecCCCCCCcce
Confidence 4332 2444443 22333333334456678889999965 45677899
Q ss_pred EEEECCEEcccce---EEE-------e-CCEEEEEEccCCCCCCeEEEEEEEeC---CCceEEEEEEEEeccccceeeec
Q psy2775 268 EWYKDGKLIKDRQ---ITS-------E-KNTHTLTLIQCSTKDKGRYSVKVTNK---EGTVESAANLNVDQGKAEFIKKL 333 (785)
Q Consensus 268 ~W~~~~~~l~~~~---~~~-------~-~~~~~l~i~~~~~~d~G~Y~C~~~n~---~g~~~~~~~l~v~~~~~~~~~~~ 333 (785)
+|..++....... ... . .....+.+.....++.|.|+|.|.|. .+.......+.+......+....
T Consensus 132 rW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~ 211 (741)
T KOG3515|consen 132 RWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITG 211 (741)
T ss_pred eeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecc
Confidence 9999876544110 000 0 12345788888899999999999984 33333344555544333333322
Q ss_pred --cceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcCc--EEEEEEcCCCCCCceEEEEEEeccc-eE
Q psy2775 334 --DDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGT--IRKLLIRNISVHDEGEYTCSLPDQE-TS 406 (785)
Q Consensus 334 --~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~-~~ 406 (785)
....+.+|+.+.|.|.+.+ |.+.++|+++..............++. .+.+.+..-..++.-...|.+.|.. ..
T Consensus 212 ~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~ 291 (741)
T KOG3515|consen 212 AQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAAS 291 (741)
T ss_pred hhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccc
Confidence 2256889999999997765 567999999887766542222222221 2234444444444556789999822 22
Q ss_pred EEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC--CCceEEEEECCEEcccCCCEE----EEEeCcEEEEEEccCCCC
Q psy2775 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVT----LSIDGKKQKLIIFSAGLE 480 (785)
Q Consensus 407 ~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~ 480 (785)
..+.+...+....+......+..|+...+.|...+ +.+.+.|+++......+.... ....-....+........
T Consensus 292 ~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~ 371 (741)
T KOG3515|consen 292 QITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQ 371 (741)
T ss_pred eeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchh
Confidence 22223233333333444555788999999999887 466799999655432221100 000112345667778889
Q ss_pred CcEEEEEEEeec-CcceeE--EEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCC
Q psy2775 481 DAGEYSCRVGDT-GDKESK--ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ 557 (785)
Q Consensus 481 d~G~Y~C~a~n~-g~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 557 (785)
|.|.|+|.|.|. .....+ ..+.+..++.-+....+
T Consensus 372 ~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~------------------------------------------ 409 (741)
T KOG3515|consen 372 DGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKT------------------------------------------ 409 (741)
T ss_pred cCceEEccccccccccccccceeccccCCchhhhhccc------------------------------------------
Confidence 999999999986 333333 33334333322221111
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCC-CceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
.....+++.....-.+.|+|. +++.|.+.+.++....+.....-......-+.++.. .|.|.|.|+|.|
T Consensus 410 ---------~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~-~d~g~y~~tatn 479 (741)
T KOG3515|consen 410 ---------AVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSR-SDGGSYGLTATN 479 (741)
T ss_pred ---------ceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeee-ccCCcceeeecc
Confidence 223333443333333336655 589999999888766554333333333344667888 999999999999
Q ss_pred CCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEE
Q psy2775 637 ELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEV 716 (785)
Q Consensus 637 ~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C 716 (785)
..|.+.....+.++ +.|.+.. ....+....|+.+.+.|
T Consensus 480 s~gg~~~~~~~~~~-----------------------------------------~sp~~~~-~~~~~~~~~~ns~~~~~ 517 (741)
T KOG3515|consen 480 SPGGAQAYLLLGVH-----------------------------------------TSPHNHH-LQDQVEGATGNSVDGEC 517 (741)
T ss_pred CCCceeeEEeeccc-----------------------------------------cCCcccc-cccccccCCCCccccee
Confidence 99988775555444 6677654 45556677788899999
Q ss_pred EEecCCCC--ceEEeECCEEe
Q psy2775 717 RFKALPPP--KAEWTVNGTVI 735 (785)
Q Consensus 717 ~~~g~P~p--~i~W~~~~~~~ 735 (785)
...+.|.- ++.|.+.|...
T Consensus 518 ~q~~~~~~~~m~~~~r~ge~~ 538 (741)
T KOG3515|consen 518 MQDEQPQDQQMHHEPRSGEPP 538 (741)
T ss_pred eccccccchhhhcccccCCCC
Confidence 98887744 68999988765
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.83 E-value=3.5e-19 Score=168.05 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=116.0
Q ss_pred CCeEEecCCcEEEEEEEeC------------CCceEEEEECCEEc--ccC-CC---E--EEEE-eCcEEEEEEccCCCCC
Q psy2775 423 QDVKVSRDEKASFEIELTK------------GDALVKWYKDGKEI--AFS-EN---V--TLSI-DGKKQKLIIFSAGLED 481 (785)
Q Consensus 423 ~~~~v~~g~~~~l~C~~~~------------~~~~i~W~~~~~~~--~~~-~~---~--~~~~-~~~~~~L~i~~~~~~d 481 (785)
..+.+.+|+++.|.|.+.+ ..+.+.|+|++... ... .+ . .... ......|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 5567889999999999754 24589999998652 111 11 0 0000 1123479999999999
Q ss_pred cEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCe
Q psy2775 482 AGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560 (785)
Q Consensus 482 ~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~ 560 (785)
+|.|+|.|.|. +....++.|.|..+.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~----------------------------------------------------- 136 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT----------------------------------------------------- 136 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC-----------------------------------------------------
Confidence 99999999997 666777777774321
Q ss_pred EeeeeeeeeeeecCeEEEEEEEe-----cCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775 561 FIERFEEKTVKEKGTIRLMAKVK-----ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635 (785)
Q Consensus 561 ~~~~~~~~~v~~g~~v~l~C~~~-----g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 635 (785)
.+..+.+|+.++|.|.+. |.|.|+|+|+|||+++..+.+.. ...+..+|.|.+++. +|+|.|+|.|.
T Consensus 137 -----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~--~~~~~~~L~I~~V~~-~DsG~YtC~a~ 208 (227)
T PHA02826 137 -----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ--LRNNNSTLVIKSATH-DDSGIYTCNLR 208 (227)
T ss_pred -----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE--EeCCCCEEEECcCCH-HhCEEEEEEEE
Confidence 023567899999999986 34678999999999997665543 233445799999999 99999999999
Q ss_pred cCCcc
Q psy2775 636 NELGS 640 (785)
Q Consensus 636 n~~g~ 640 (785)
..++.
T Consensus 209 ~~~~g 213 (227)
T PHA02826 209 FNKNS 213 (227)
T ss_pred EeECC
Confidence 87644
No 14
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=170.17 Aligned_cols=156 Identities=12% Similarity=0.161 Sum_probs=117.7
Q ss_pred eeeeeeeecCeEEEEEEEecCCCC-----------ceEEEeCCEEe--cC-CCCe--e-EEe---eCCeEEEEEccCCCC
Q psy2775 565 FEEKTVKEKGTIRLMAKVKASPAP-----------SIVWFRNNKPL--LS-SPKK--R-EIF---DGENIILELKEADSE 624 (785)
Q Consensus 565 ~~~~~v~~g~~v~l~C~~~g~P~p-----------~v~W~~~~~~i--~~-~~~~--~-~~~---~~~~~~L~i~~~~~~ 624 (785)
+....+.+|+++.|.|.+.++|+| .|.|+|++... .. +.+. . +.. ......|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~- 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN- 107 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-
Confidence 346789999999999999887643 89999988652 11 1110 0 000 12245799999999
Q ss_pred CCceeEEEEEEcCCcceEEEEEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcE
Q psy2775 625 TDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704 (785)
Q Consensus 625 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~ 704 (785)
+|+|.|+|.|.|..|..+.++.|.|. .++ ...
T Consensus 108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~-----------------------------------------~~~-------~~~ 139 (227)
T PHA02826 108 IDEGIYICTISSGNICEESTIRLTFD-----------------------------------------SGT-------INY 139 (227)
T ss_pred HHCEEEEEEEEECCcceEEEEEEEEe-----------------------------------------cCC-------ccc
Confidence 99999999999999888777777764 111 122
Q ss_pred EeecCCeEEEEEEEe-----cCCCCceEEeECCEEeeeccccccchhhhcccccceeeeeeceEEEEEEec
Q psy2775 705 LVKKGEDLKIEVRFK-----ALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTS 770 (785)
Q Consensus 705 ~~~~g~~~~l~C~~~-----g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~c~~~~ 770 (785)
.+..|+.++|.|.+. |.|.|+|+|+|||..|..+.++.+... ...|.+..|..+|+|.|+|++..
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~-~~~L~I~~V~~~DsG~YtC~a~~ 209 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN-NSTLVIKSATHDDSGIYTCNLRF 209 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC-CCEEEECcCCHHhCEEEEEEEEE
Confidence 467899999999986 356899999999999987777654422 23699999999999999999985
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.77 E-value=5.5e-18 Score=138.21 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=83.2
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
|.|+..+++..+..|+.++|.|.+.|.|+|++.|+|+|.++..+.++.+......+.|.|.++.. +|+|.|+|.|+|..
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~-~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQ-EHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCCh-hhCEEEEEEEEcCC
Confidence 56788888999999999999999999999999999999999877777777767788999999999 99999999999999
Q ss_pred cceEEEEEEEEE
Q psy2775 639 GSATHGARVTVD 650 (785)
Q Consensus 639 g~~~~~~~l~V~ 650 (785)
|...+++.|.|.
T Consensus 80 G~~~~~~~l~V~ 91 (98)
T cd05762 80 GSRQAQVNLTVV 91 (98)
T ss_pred CceeEEEEEEEe
Confidence 999998888876
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.1e-16 Score=127.96 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=76.5
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
+|.|...+.+..+.+|+.++|.|.+.|+|.|.|+|+|++..+....+ +... ...|.|.++.. +|+|.|+|.|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~--~~~~--~~~L~I~~v~~-~D~G~Y~C~A~N~ 75 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--ISMS--GAVLKIFNIQP-EDEGTYECEAENI 75 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE--EecC--CCEEEECcCCh-hhCEEEEEEEEcC
Confidence 48888899999999999999999999999999999999988765432 2222 34699999999 9999999999999
Q ss_pred CcceEEEEEEEEE
Q psy2775 638 LGSATHGARVTVD 650 (785)
Q Consensus 638 ~g~~~~~~~l~V~ 650 (785)
.|....++.|.|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd05851 76 KGKDKHQARVYVQ 88 (88)
T ss_pred CCceEEEEEEEEC
Confidence 9999999998874
No 17
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.69 E-value=5e-16 Score=126.67 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=83.2
Q ss_pred CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
|.|...|+.+.+.+|+++.|.|.+.|.|++.+.|+|++..|..+.++.+....+. +.|+|.++..+|+|.|+|.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~----s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENS----SKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCe----eEEEECCCChhhCEEEEEEEE
Confidence 7899999999999999999999999999999999999999987777766654432 569999999999999999999
Q ss_pred cCCeeEEEEeeEEEeC
Q psy2775 93 NREGEAKMDIPVKVNT 108 (785)
Q Consensus 93 ~~~~~~~~~~~v~v~~ 108 (785)
|..|.....+.|.|..
T Consensus 77 N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 77 NKLGSRQAQVNLTVVD 92 (98)
T ss_pred cCCCceeEEEEEEEec
Confidence 9999999999999974
No 18
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.69 E-value=3.2e-16 Score=127.12 Aligned_cols=89 Identities=22% Similarity=0.410 Sum_probs=80.9
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
||.|+..+++..+.+|++++|.|.+.|+|.|.+.|+|+|..+..+.++.+......++|.|.++.. +|+|.|+|.|+|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM-SDEGNYTVVVENS 81 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCc-ccCEeEEEEEEcC
Confidence 588888899999999999999999999999999999999998877777666666678999999999 9999999999999
Q ss_pred CcceEEEEEE
Q psy2775 638 LGSATHGARV 647 (785)
Q Consensus 638 ~g~~~~~~~l 647 (785)
.|....++.|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9998887765
No 19
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.68 E-value=4.8e-16 Score=126.58 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=71.9
Q ss_pred eeeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEeeC-----CeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 566 EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
..+.+.+|+.++|.|.++| .|+|.+.|+|||.+|..+....+...+ ..++|.|.++.. +|+|.|+|.|+|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCCc
Confidence 3678999999999999999 899999999999999865544333322 247899999999 999999999999999
Q ss_pred ceEEEEEEEEE
Q psy2775 640 SATHGARVTVD 650 (785)
Q Consensus 640 ~~~~~~~l~V~ 650 (785)
..+.++.|.|+
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 99999999886
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.67 E-value=8.4e-16 Score=121.99 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=71.8
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
...+.+|+++.|.|.+.|.|.|.+.|+|++.++... .++.+......+.|.|.++.. +|+|.|+|.|.|..|....++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAER-EDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCcc-CcCEEEEEEEEeCCCcEEEEE
Confidence 567899999999999999999999999999999754 345555555678899999999 999999999999999998888
Q ss_pred EEEE
Q psy2775 646 RVTV 649 (785)
Q Consensus 646 ~l~V 649 (785)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7765
No 21
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.67 E-value=9.1e-16 Score=124.77 Aligned_cols=90 Identities=36% Similarity=0.622 Sum_probs=85.2
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
|.|...+.+..+.+|++++|.|.+.|.|.|.+.|+++|..+..+.++.+...+..++|.|.++.. +|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTR-EDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESG-GGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCCh-hhCEEEEEEEEECC
Confidence 67888889999999999999999999999999999999999998888888888999999999999 99999999999999
Q ss_pred cceEEEEEEEE
Q psy2775 639 GSATHGARVTV 649 (785)
Q Consensus 639 g~~~~~~~l~V 649 (785)
|..+.++.|.|
T Consensus 80 g~~~~~~~l~V 90 (90)
T PF07679_consen 80 GEATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred CEEEEEEEEEC
Confidence 99999888876
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=1.1e-15 Score=123.95 Aligned_cols=83 Identities=29% Similarity=0.490 Sum_probs=72.7
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG 644 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 644 (785)
..+.+.+|++++|.|.+.|.|.|.+.|+|++.++..+.++.+... +...+|.|.++.. +|+|.|+|.|.|..|....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCcceEE
Confidence 356899999999999999999999999999999987777666544 4567899999999 99999999999999999888
Q ss_pred EEEEE
Q psy2775 645 ARVTV 649 (785)
Q Consensus 645 ~~l~V 649 (785)
+.|.|
T Consensus 88 ~~v~v 92 (92)
T cd05737 88 VTVSV 92 (92)
T ss_pred EEEeC
Confidence 87765
No 23
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.65 E-value=8.1e-16 Score=117.71 Aligned_cols=73 Identities=36% Similarity=0.518 Sum_probs=62.1
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++|+|.+.|.|.|.|.|+|++..+..+ .++.+..+ ++..+|.|.++.. +|+|.|+|.|.|..|++..++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998743 44444443 3445899999999 9999999999999999999999875
No 24
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=1.7e-15 Score=121.06 Aligned_cols=87 Identities=31% Similarity=0.461 Sum_probs=76.1
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA 91 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 91 (785)
||.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.. .+ ..|.|.+++.+|+|.|+|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~~------~~L~I~~v~~~D~G~Y~C~A 72 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--SG------AVLKIFNIQPEDEGTYECEA 72 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--CC------CEEEECcCChhhCEEEEEEE
Confidence 79999999999999999999999999999999999999987765443322 22 35999999999999999999
Q ss_pred EcCCeeEEEEeeEEE
Q psy2775 92 KNREGEAKMDIPVKV 106 (785)
Q Consensus 92 ~~~~~~~~~~~~v~v 106 (785)
.|..|.....+.|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd05851 73 ENIKGKDKHQARVYV 87 (88)
T ss_pred EcCCCceEEEEEEEE
Confidence 999999988888776
No 25
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=2.6e-15 Score=121.18 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=72.5
Q ss_pred eeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
+.++.+..+.+|+.++|.|.+.|+|.|.+.|+++|..+...............+|.|.++.. +|.|.|+|.|.|..|..
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITS-ETQTTVTCTAENPVGQA 82 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCc-ccCEEEEEEEECCCCce
Confidence 33445667999999999999999999999999999988655433333344567899999999 99999999999999999
Q ss_pred EEEEEEEE
Q psy2775 642 THGARVTV 649 (785)
Q Consensus 642 ~~~~~l~V 649 (785)
..++.|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 99888764
No 26
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=1.4e-15 Score=116.05 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=63.9
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+++.|.|.+.|.|.|+|+|+|++..+..+.++.+.. ..+|.|.++.. +|+|.|+|.|.|..|++..++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITK-LDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCCh-hHCEEEEEEEECCCCceeEEEEEEC
Confidence 6899999999999999999999999887766654433 23699999999 9999999999999999999998875
No 27
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.63 E-value=1.8e-15 Score=116.02 Aligned_cols=73 Identities=34% Similarity=0.488 Sum_probs=61.0
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCC-eeEEeeC-CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDG-ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~-~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+|+|.+.|.|.|.|.|+|++.++..+.. +.+...+ +..+|.|.++.. +|+|.|+|.|.|..|+...++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999999875433 3332232 334799999999 9999999999999999999998875
No 28
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.62 E-value=2.9e-15 Score=122.37 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=70.6
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee------CCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD------GENIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~------~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
...+..|+.++|.|.+.|+|+|.+.|+|||.+|..+.+...... ...++|.|.++.. +|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCce
Confidence 56788999999999999999999999999999976554322211 1246899999999 9999999999999999
Q ss_pred eEEEEEEEEE
Q psy2775 641 ATHGARVTVD 650 (785)
Q Consensus 641 ~~~~~~l~V~ 650 (785)
...++.|.|+
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999886
No 29
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.62 E-value=1.7e-15 Score=117.12 Aligned_cols=74 Identities=24% Similarity=0.415 Sum_probs=64.0
Q ss_pred ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
+|+++.|.|.+.|+|.|.|+|+|++..+..+.+..+. ...+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVAL-HDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCH-HhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999998765444332 234799999999 9999999999999999999888865
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=4.7e-15 Score=114.91 Aligned_cols=74 Identities=26% Similarity=0.488 Sum_probs=66.4
Q ss_pred eEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 575 ~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++.|.|.+.|.|.|.+.|+|+|..+..+.+..+...+...+|.|.++.. +|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAER-SDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCc-CcCEEEEEEEECCCccEEEEEEEEC
Confidence 4789999999999999999999999777777666667788999999999 9999999999999999988888765
No 31
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.61 E-value=8.3e-15 Score=118.37 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=68.5
Q ss_pred eeeeeeeeecCeEEEEEEEecCCC-CceEEEe-CCEEecCCC-CeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEcCC-
Q psy2775 564 RFEEKTVKEKGTIRLMAKVKASPA-PSIVWFR-NNKPLLSSP-KKREIF-DGENIILELKEADSETDAGDYKVVATNEL- 638 (785)
Q Consensus 564 ~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~-~~~~i~~~~-~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~- 638 (785)
.+....+.+|++++|.|.+.|.|. |.|+|++ ++..+.... ++.+.. ++..++|+|.++.. +|+|.|+|.|+|..
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~~ 84 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNEDE 84 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCCC
Confidence 345668999999999999999995 6999998 787776533 333333 23457899999999 99999999999997
Q ss_pred cceEEEEEEEE
Q psy2775 639 GSATHGARVTV 649 (785)
Q Consensus 639 g~~~~~~~l~V 649 (785)
|.+++++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 88888888776
No 32
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.60 E-value=3e-15 Score=110.94 Aligned_cols=66 Identities=23% Similarity=0.433 Sum_probs=57.8
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
++|.|.+.|+|.|.++|||||.++... .....|.|.++.. +|+|.|+|.|+|..|..+.+.++.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTE-ASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCH-HHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999998532 2345799999999 99999999999999988888887774
No 33
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.60 E-value=8.1e-15 Score=120.40 Aligned_cols=90 Identities=21% Similarity=0.408 Sum_probs=72.0
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe--CCEEecC-----CCCeeEEeeCCeEEEEEccCCCCCCceeE
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLLS-----SPKKREIFDGENIILELKEADSETDAGDY 630 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--~~~~i~~-----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y 630 (785)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|+|+| ++..+.. +.++.+.......+|+|.+++. +|+|.|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~-~D~G~Y 79 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKL-SDSGRY 79 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCc-CCCEEE
Confidence 366654 678999999999999999999999999999 4444432 1233333334567899999999 999999
Q ss_pred EEEEEcCCcceEEEEEEEE
Q psy2775 631 KVVATNELGSATHGARVTV 649 (785)
Q Consensus 631 ~C~a~n~~g~~~~~~~l~V 649 (785)
+|.|.|..|....++.|.|
T Consensus 80 ~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEeccCCcceeEEEEeC
Confidence 9999999999988887764
No 34
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.60 E-value=7.7e-15 Score=114.65 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=69.0
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
|++++|.|.+.|.|.|.|+|++++..+....++.+...++...|+|.++.. +|+|.|+|.|.|..|....++.+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKE-SDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCCh-HHCEEEEEEEEecCCEEEecccEEEE
Confidence 789999999999999999999999988777676666667778999999999 99999999999999999888887764
No 35
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.60 E-value=1.9e-14 Score=116.76 Aligned_cols=90 Identities=21% Similarity=0.422 Sum_probs=78.9
Q ss_pred CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV 90 (785)
Q Consensus 11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 90 (785)
.||+|...|+.+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+..... .++|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEY----KSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCC----eeEEEECCCCcccCEeEEEE
Confidence 58999999999999999999999999999999999999999887777766554332 25699999999999999999
Q ss_pred EEcCCeeEEEEeeE
Q psy2775 91 AKNREGEAKMDIPV 104 (785)
Q Consensus 91 a~~~~~~~~~~~~v 104 (785)
|.|..|.....+.|
T Consensus 78 a~N~~G~~~~~~~l 91 (92)
T cd05747 78 VENSEGKQEAQFTL 91 (92)
T ss_pred EEcCCCCEeEEEEe
Confidence 99999988776654
No 36
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=6.8e-15 Score=118.40 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=74.2
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
||.+...+.+..+.+|+.++|.|.+.|+|.|.++|+|++..+....... .....|.|.+++. +|+|.|+|.|.|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~-~D~G~Y~C~a~N~ 75 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQF-EDEGTYECEAENI 75 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCc-ccCEEEEEEEEEC
Confidence 3566777788899999999999999999999999999887765443221 2345799999999 9999999999999
Q ss_pred CcceEEEEEEEEE
Q psy2775 638 LGSATHGARVTVD 650 (785)
Q Consensus 638 ~g~~~~~~~l~V~ 650 (785)
.|....++.|.|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd04968 76 KGKDTHQGRIYVQ 88 (88)
T ss_pred CCcEEEEEEEEEC
Confidence 9999999988873
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.59 E-value=5.3e-15 Score=117.68 Aligned_cols=84 Identities=23% Similarity=0.438 Sum_probs=71.6
Q ss_pred EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
|+..+.+..+.+|++++|.|.+.|.|.|.+.|+|+|..+..+.+... .+ ..|.|.++.. +|+|.|+|.|.|..|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~--~~L~i~~~~~-~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EA--GDLRITKLSL-SDSGMYQCVAENKHGT 76 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eC--CEEEEeeCCH-HHCEEEEEEEECCCCe
Confidence 44556788999999999999999999999999999999876554332 22 3699999999 9999999999999999
Q ss_pred eEEEEEEEE
Q psy2775 641 ATHGARVTV 649 (785)
Q Consensus 641 ~~~~~~l~V 649 (785)
...++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 998888765
No 38
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=1.9e-14 Score=114.92 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=70.9
Q ss_pred eeeeeeeeeeecCeEEEEEEEecCCCCceEEEe-CCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
...+.+..+.+|+++.|.|.+.|.|. .++|++ ++..+..+.++.+...+...+|+|.++.. +|+|.|+|.|+|..|.
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI-EDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCCh-HHCEEEEEEEEcCCCc
Confidence 34556788999999999999999998 899998 57777766666665566677999999999 9999999999999998
Q ss_pred e-EEEEEEEE
Q psy2775 641 A-THGARVTV 649 (785)
Q Consensus 641 ~-~~~~~l~V 649 (785)
. .+++.|.|
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 6 44555544
No 39
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.59 E-value=1.2e-14 Score=119.02 Aligned_cols=83 Identities=19% Similarity=0.397 Sum_probs=70.4
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
.+..+..|++++|.|.+.|+|.|.|.|+|+|..+...... .........|+|.++.. +|+|.|+|.|.|..|....++
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEK-YSFNEDGSEMTILDVDK-LDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCE-EEEeCCCCEEEECCCCh-hhCEEEEEEEEcCCCeEEEEE
Confidence 3557899999999999999999999999999998765222 23333445799999999 999999999999999999999
Q ss_pred EEEEE
Q psy2775 646 RVTVD 650 (785)
Q Consensus 646 ~l~V~ 650 (785)
.|.|.
T Consensus 89 ~L~V~ 93 (95)
T cd05730 89 HLKVF 93 (95)
T ss_pred EEEEE
Confidence 98886
No 40
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.59 E-value=1.1e-14 Score=112.28 Aligned_cols=73 Identities=37% Similarity=0.523 Sum_probs=61.5
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++|+|.+.|.|.|.|.|+|++..+..+ .++.+... .+..+|.|.++.. +|+|.|+|.|.|..|++..++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999998754 34444333 3445799999999 9999999999999999999988865
No 41
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.59 E-value=1.6e-14 Score=118.31 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=71.4
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC-----CeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-----KKREIFDGENIILELKEADSETDAGDYKVV 633 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~ 633 (785)
|.|........+..|+.++|.|.+.|.|.|.|+|++++..+.... +..+......+.|.|.++.. +|+|.|+|.
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~ 81 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQY-TDAGEYLCT 81 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCcc-CcCEEEEEE
Confidence 666655555556668999999999999999999999988775332 22222234457899999999 999999999
Q ss_pred EEcCCcceEEEEEEEE
Q psy2775 634 ATNELGSATHGARVTV 649 (785)
Q Consensus 634 a~n~~g~~~~~~~l~V 649 (785)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999888765
No 42
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.59 E-value=2.6e-14 Score=116.12 Aligned_cols=90 Identities=37% Similarity=0.644 Sum_probs=82.3
Q ss_pred CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
|+|...+..+.+.+|+++.|.|.+.|.|.+.+.|++++..+..+.++.+...+. .++|+|.+++.+|+|.|+|.|.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGG----SSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETT----EEEEEESSESGGGSEEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccc----eeEEccCCCChhhCEEEEEEEE
Confidence 789999999999999999999999999999999999999999988888777663 3679999999999999999999
Q ss_pred cCCeeEEEEeeEEE
Q psy2775 93 NREGEAKMDIPVKV 106 (785)
Q Consensus 93 ~~~~~~~~~~~v~v 106 (785)
|..|.....+.|.|
T Consensus 77 n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 77 NSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEC
Confidence 99999988888765
No 43
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.58 E-value=1.1e-14 Score=112.70 Aligned_cols=74 Identities=26% Similarity=0.426 Sum_probs=62.2
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+.++|.|.+.|+|.|+|+|+|+|.++...... ....++ ..|.|.+++. +|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQE-RSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCH-hhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 688999999999999999999999998644322 122222 3689999999 9999999999999999999999887
No 44
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.58 E-value=2.4e-14 Score=114.33 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCC-CeeEEe--eC--CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-KKREIF--DG--ENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-~~~~~~--~~--~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
|+.++|.|.+.|.|+|.++|+|++..+..+. ++.+.. .+ ..++|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCcceEEEEE
Confidence 7899999999999999999999999886543 443332 12 236799999999 99999999999999999998888
Q ss_pred EEE
Q psy2775 648 TVD 650 (785)
Q Consensus 648 ~V~ 650 (785)
.|+
T Consensus 80 ~V~ 82 (88)
T cd05735 80 TVQ 82 (88)
T ss_pred EEe
Confidence 887
No 45
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.58 E-value=1.6e-14 Score=110.42 Aligned_cols=71 Identities=20% Similarity=0.429 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 575 ~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
+++|.|.+.|.|.|.++|+|+|..+..+.++.+..++ .|.|.++.. +|+|.|+|.|.|..|+...++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVK-SDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCc-ccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999998766655444332 377889998 9999999999999999999888865
No 46
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.57 E-value=3.7e-14 Score=115.55 Aligned_cols=89 Identities=22% Similarity=0.453 Sum_probs=73.5
Q ss_pred CCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 19 TKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
...+.+.+|++++|.|.+.| .|+|.+.|+|+|.+|.......+...+ ....+.++|+|..++.+|+|.|+|.|.|..|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 35799999999999999999 899999999999999765544333222 1223457899999999999999999999999
Q ss_pred eEEEEeeEEEe
Q psy2775 97 EAKMDIPVKVN 107 (785)
Q Consensus 97 ~~~~~~~v~v~ 107 (785)
.....+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 99888888875
No 47
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=2.4e-14 Score=111.30 Aligned_cols=74 Identities=28% Similarity=0.414 Sum_probs=62.5
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|++++|.|.+.|.|.|+|+|+|+|..+...... .... ....|.|.+++. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQP-SDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCCh-hhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999988654322 2222 234699999999 9999999999999999999888877
No 48
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.56 E-value=2.7e-14 Score=114.37 Aligned_cols=81 Identities=22% Similarity=0.429 Sum_probs=68.5
Q ss_pred eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCee-EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646 (785)
Q Consensus 568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 646 (785)
+.+.+|+.++|.|.+.|+|.|.++|+|+|..+..+.+.. ........+|.|.++.. +|+|.|+|.|.|..|+...+++
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCc-ccCEEEEEEEEeCCCEEEEEEE
Confidence 468899999999999999999999999999987655432 12234456799999999 9999999999999999999888
Q ss_pred EEE
Q psy2775 647 VTV 649 (785)
Q Consensus 647 l~V 649 (785)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 865
No 49
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.56 E-value=2.5e-14 Score=117.67 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=72.3
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC-----CeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-----KKREIFDGENIILELKEADSETDAGDYKVV 633 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~ 633 (785)
|.|. .+.+..+.+|++++|.|.+.|+|.|.+.|++++..+.... ++.+......++|+|.+++. +|+|.|+|.
T Consensus 3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 80 (96)
T cd05732 3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL-TDAGRYDCE 80 (96)
T ss_pred ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCc-CcCEEeEEE
Confidence 6664 4567899999999999999999999999999987665432 22222334567899999999 999999999
Q ss_pred EEcCCcceEEEEEEEE
Q psy2775 634 ATNELGSATHGARVTV 649 (785)
Q Consensus 634 a~n~~g~~~~~~~l~V 649 (785)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999988777764
No 50
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.55 E-value=4.4e-14 Score=114.00 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=70.5
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG 644 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 644 (785)
..+.+.+|+++.|.|.+.|.|.|.+.|||++..+..+.++..... +..++|.|.++.. +|+|.|+|.|.|..|....+
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCceeeE
Confidence 356899999999999999999999999999999877666544433 3346899999999 99999999999999998887
Q ss_pred EEEEE
Q psy2775 645 ARVTV 649 (785)
Q Consensus 645 ~~l~V 649 (785)
..|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 77764
No 51
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.55 E-value=3.8e-14 Score=110.22 Aligned_cols=75 Identities=25% Similarity=0.492 Sum_probs=61.1
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEee
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 652 (785)
++|.|.+.|.|.|.|+|+|+|.++..+.....+. ....+|.|.++.. +|+|.|+|.|.|.+|....+..+.|.+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS-SKERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe-CCCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5899999999999999999999986654332222 3345799999999 9999999999999999877777777653
No 52
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.55 E-value=5.4e-14 Score=117.14 Aligned_cols=91 Identities=27% Similarity=0.511 Sum_probs=70.2
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCC----CCeeEEe-eCCeEEEEEc--cCCCCCCceeE
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS----PKKREIF-DGENIILELK--EADSETDAGDY 630 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~----~~~~~~~-~~~~~~L~i~--~~~~~~d~G~Y 630 (785)
+|.|...+.+..+.+|++++|.|.+.|+|.|.|+|+|+|..+... ....... ++....+.+. .+.. +|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGR-SDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCc-CcCEEE
Confidence 488888889999999999999999999999999999999988652 2222222 3333334443 3356 999999
Q ss_pred EEEEEcCCcc-eEEEEEEEE
Q psy2775 631 KVVATNELGS-ATHGARVTV 649 (785)
Q Consensus 631 ~C~a~n~~g~-~~~~~~l~V 649 (785)
+|.|.|..|. ....+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999999 556676665
No 53
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.54 E-value=4e-14 Score=108.43 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=57.9
Q ss_pred EEEEEEecCCCCceEEEeCCEEecCCCCeeE--Ee---eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775 577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--IF---DGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648 (785)
Q Consensus 577 ~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~--~~---~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 648 (785)
-|.|.+.|+|.|+|+|||||++|..+.+... .. ....++|.|.++.. +|+|.|+|.|+|..|++..++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999999976654322 11 12356899999999 999999999999999888776653
No 54
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.54 E-value=3.6e-14 Score=110.87 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=63.9
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+.++|.|.+.|+|.|.|.|+++|..+...... .........|.|.+++. +|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQP-NDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCCh-hhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999988765433 12233445799999999 9999999999999999999888876
No 55
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.54 E-value=8.9e-14 Score=112.68 Aligned_cols=87 Identities=24% Similarity=0.417 Sum_probs=73.5
Q ss_pred ecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 17 KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 17 ~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
.-|+.+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+....+. .++|+|.+++.+|+|.|+|.|.|..|
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGK---YASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCC---EEEEEEccCChhhCEEEEEEEEECCC
Confidence 346678999999999999999999999999999999987777666544221 14699999999999999999999999
Q ss_pred eEEEEeeEEE
Q psy2775 97 EAKMDIPVKV 106 (785)
Q Consensus 97 ~~~~~~~v~v 106 (785)
.....+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9888877654
No 56
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=3.8e-14 Score=109.27 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=63.8
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+.+.|.|.+.|.|.|.++|+|++..+..+.+..... ..+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTK-SDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCCh-hHCEEEEEEEECCCCceEEEEEEEC
Confidence 6889999999999999999999999987766654332 23699999999 9999999999999999999888875
No 57
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.54 E-value=8.2e-14 Score=112.85 Aligned_cols=82 Identities=22% Similarity=0.443 Sum_probs=65.7
Q ss_pred CeEeeeeeeeeee---ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCC-CCCCceeEEEEE
Q psy2775 559 PLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD-SETDAGDYKVVA 634 (785)
Q Consensus 559 p~~~~~~~~~~v~---~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~-~~~d~G~Y~C~a 634 (785)
|.|+..+.++.+. +|++++|.|.+.|.|.|.|+|+|+|..+...........+ ..|.|.++. . +|+|.|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~-~D~G~Y~C~A 78 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEV-KDSGRYQCLA 78 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCcc-CcCEEEEEEE
Confidence 7788887777654 4789999999999999999999999998654443333333 358888874 5 8999999999
Q ss_pred EcCCcceEE
Q psy2775 635 TNELGSATH 643 (785)
Q Consensus 635 ~n~~g~~~~ 643 (785)
.|.+|+..+
T Consensus 79 ~N~~G~~~S 87 (94)
T cd05848 79 TNSIGSILS 87 (94)
T ss_pred EcCCCeEEe
Confidence 999998754
No 58
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.54 E-value=2.4e-14 Score=107.72 Aligned_cols=69 Identities=22% Similarity=0.426 Sum_probs=58.3
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
++|.|.+.|+|.|.++|+|||.++....+ . . ....|.|.++.. +|+|.|+|.|.|..|..+.+.++.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~-~--~~~~L~I~~v~~-~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--F-K--RGVHLTIYEVTE-KDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--E-c--cCCEEEECcCCH-HHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47999999999999999999999965432 1 1 234699999999 99999999999999988888777764
No 59
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.53 E-value=1.2e-13 Score=112.07 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=65.4
Q ss_pred CeEeeeeeeeeeeec---CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775 559 PLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635 (785)
Q Consensus 559 p~~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 635 (785)
|.|...+++..+.+| ++++|.|.+.|+|.|+|+|+++|..+...........+ ..|.|.++...+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEE
Confidence 778888888877666 58999999999999999999999998644332222222 3588877553289999999999
Q ss_pred cCCcceEE
Q psy2775 636 NELGSATH 643 (785)
Q Consensus 636 n~~g~~~~ 643 (785)
|..|+..+
T Consensus 80 N~~G~~~s 87 (94)
T cd05850 80 NRCGTVVS 87 (94)
T ss_pred cCcCcEEE
Confidence 99998765
No 60
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.53 E-value=6.7e-14 Score=109.12 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=58.4
Q ss_pred EEEEEEecCCCCceEEEeCCEEecCCCCeeEEee-------CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775 577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648 (785)
Q Consensus 577 ~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~-------~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 648 (785)
.|.|.+.|+|.|+|+|+|||+++..+........ ...+.|+|.++.. +|+|.|+|.|+|.+|.+.+++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999999999999999999987654332221 2356799999999 999999999999999988876653
No 61
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.53 E-value=1.6e-13 Score=108.95 Aligned_cols=83 Identities=27% Similarity=0.477 Sum_probs=70.5
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775 20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98 (785)
Q Consensus 20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~ 98 (785)
+.+.+.+|+++.|.|.+.|.|.|.+.|++++.++... .++.+....+ .+.|.|.+++.+|+|.|+|.|.|..|.+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 4688999999999999999999999999999998764 3555544332 3569999999999999999999999998
Q ss_pred EEEeeEEE
Q psy2775 99 KMDIPVKV 106 (785)
Q Consensus 99 ~~~~~v~v 106 (785)
...+.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 88877764
No 62
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.52 E-value=8.9e-14 Score=110.63 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=73.3
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~ 94 (785)
|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.... ..|+|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA--------GDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC--------CEEEEeeCCHHHCEEEEEEEECC
Confidence 6778999999999999999999999999999999999987766554422 24999999999999999999999
Q ss_pred CeeEEEEeeEEE
Q psy2775 95 EGEAKMDIPVKV 106 (785)
Q Consensus 95 ~~~~~~~~~v~v 106 (785)
.|....++.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999888777654
No 63
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.52 E-value=5e-14 Score=107.33 Aligned_cols=70 Identities=33% Similarity=0.517 Sum_probs=59.8
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
++|.|.+.|+|.|.+.|+|+|.++..+.++ . ....+|.|.++.. +|+|.|+|.|.|..|..+.+.++.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~--~--~~~~~L~I~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT--K--KSGHSLTIKDVTE-EDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--E--cCCCEEEECcCCH-HHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 479999999999999999999999766322 1 2345799999999 99999999999999998888888774
No 64
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.52 E-value=2.4e-13 Score=108.54 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=68.2
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~ 105 (785)
|+.++|.|.+.|.|++.+.|++++..+... .++.+..........++|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 899999999999999999999999888543 3555443322233457899999999999999999999999999999999
Q ss_pred EeC
Q psy2775 106 VNT 108 (785)
Q Consensus 106 v~~ 108 (785)
|..
T Consensus 81 V~~ 83 (88)
T cd05735 81 VQE 83 (88)
T ss_pred EeC
Confidence 874
No 65
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=8e-14 Score=105.17 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=56.4
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
|+.++|.|.+.|.|.|.|+|+|++.++....+. ..+...|+|.++ .|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~----~~~~~~L~i~~~---~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM----PVGRNVLELTNI---YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccce----ecCccEEEEecc---ccCeeEEEEEEeCCCEEEEEEEE
Confidence 688999999999999999999999988654432 123346999986 57999999999999998887765
No 66
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=1.4e-13 Score=110.86 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=64.5
Q ss_pred CeEeeeeeeeeeeecC---eEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775 559 PLFIERFEEKTVKEKG---TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~---~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 635 (785)
|.|...+.+..+.++. ++.|.|.+.|+|.|+|+|+|++..+....... ...+ ..|.|.++...+|+|.|+|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~-~~~~--g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY-SMVG--GNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE-EEEC--CEEEECcCCcCCCCEEEEEEEE
Confidence 7888888777666554 89999999999999999999999885433322 2223 4689988752289999999999
Q ss_pred cCCcceEE
Q psy2775 636 NELGSATH 643 (785)
Q Consensus 636 n~~g~~~~ 643 (785)
|..|...+
T Consensus 79 N~~G~~~s 86 (93)
T cd05849 79 NIYGKVRS 86 (93)
T ss_pred eCcceEEE
Confidence 99998755
No 67
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.51 E-value=5.2e-14 Score=107.53 Aligned_cols=70 Identities=31% Similarity=0.445 Sum_probs=58.9
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
+.|.|.+.|+|.|.|.|+|++..+..+. .. ......+|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~--~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TK--KLNNNKTLQLDNVLE-SDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-ee--EEcCCCEEEEcccCH-HhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999998775432 21 223456799999999 9999999999999999998888877
No 68
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=1.7e-13 Score=108.43 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=63.0
Q ss_pred CeEEEEEEEecCCCC--ceEEEeCCEEecCCC---CeeEE-eeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 574 GTIRLMAKVKASPAP--SIVWFRNNKPLLSSP---KKREI-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 574 ~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~---~~~~~-~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
+.++|.|.+.|.|.| .|+|+|||..+.... ++.+. .....++|+|.+++. +|+|.|+|.|.|..|...+++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCCCEEEEEEE
Confidence 468999999999988 589999999886432 22222 223456899999999 99999999999999999999999
Q ss_pred EEE
Q psy2775 648 TVD 650 (785)
Q Consensus 648 ~V~ 650 (785)
.|.
T Consensus 80 ~V~ 82 (85)
T cd05854 80 VVR 82 (85)
T ss_pred EEE
Confidence 997
No 69
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=1.8e-13 Score=110.11 Aligned_cols=87 Identities=24% Similarity=0.364 Sum_probs=73.9
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA 91 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 91 (785)
||.|...|....+.+|++++|.|.+.|.|.+.+.|++++..+....... .. ...|.|.+++.+|+|.|+|.|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~------~~~L~i~~v~~~D~G~Y~C~a 72 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MS------GAVLKIPNIQFEDEGTYECEA 72 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--Ee------CCEEEECCCCcccCEEEEEEE
Confidence 6788889999999999999999999999999999999887665443322 11 135999999999999999999
Q ss_pred EcCCeeEEEEeeEEE
Q psy2775 92 KNREGEAKMDIPVKV 106 (785)
Q Consensus 92 ~~~~~~~~~~~~v~v 106 (785)
.|..|.......|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd04968 73 ENIKGKDTHQGRIYV 87 (88)
T ss_pred EECCCcEEEEEEEEE
Confidence 999999888887766
No 70
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.51 E-value=1.8e-13 Score=112.00 Aligned_cols=90 Identities=32% Similarity=0.564 Sum_probs=74.4
Q ss_pred CCeeeecC--CceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775 12 PPTFSKKT--KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88 (785)
Q Consensus 12 ~p~~~~~~--~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 88 (785)
||.|...+ .+..+.+|+++.|.|.+.|.|.+.+.|++++..+... .++.+...+ +.|+|.+++.+|+|.|+
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~------~~L~I~~v~~~D~G~Y~ 74 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDG------SEMTILDVDKLDEAEYT 74 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCC------CEEEECCCChhhCEEEE
Confidence 67777654 4568899999999999999999999999999988665 333332221 45999999999999999
Q ss_pred EEEEcCCeeEEEEeeEEEe
Q psy2775 89 VVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 89 C~a~~~~~~~~~~~~v~v~ 107 (785)
|.|.|..|.....+.|.|.
T Consensus 75 C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 75 CIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEEcCCCeEEEEEEEEEE
Confidence 9999999999888888875
No 71
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.50 E-value=2.8e-13 Score=109.52 Aligned_cols=88 Identities=22% Similarity=0.390 Sum_probs=69.6
Q ss_pred eecCCceEecCCCeEEEEEEEEecCC-CeeEEEE-CCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYY-NGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
...|....+.+|++++|.|.+.|.|. |.++|++ ++..+.. ..++.+...++ ..++|+|.+++.+|+|.|+|.|.
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~---~~~~L~I~~v~~~D~G~YtC~A~ 80 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD---YSSTLTIYNANIDDAGIYKCVVS 80 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC---CceEEEEeccChhhCEEEEEEEE
Confidence 45677889999999999999999985 7999998 6766655 33444333222 23679999999999999999999
Q ss_pred cCC-eeEEEEeeEEE
Q psy2775 93 NRE-GEAKMDIPVKV 106 (785)
Q Consensus 93 ~~~-~~~~~~~~v~v 106 (785)
|.. |....++.|.|
T Consensus 81 N~~~g~~~~s~~l~v 95 (96)
T cd05865 81 NEDEGESEATVNVKI 95 (96)
T ss_pred cCCCCcEEEEEEEEE
Confidence 996 78888877766
No 72
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.50 E-value=1.4e-13 Score=110.27 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=64.9
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE-E
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH-G 644 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~-~ 644 (785)
.++.+.+|++++|.|.+.|. .|.|.|+|++..+..+ + +.......+|+|.+++. +|+|.|+|.|.|..|...+ .
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~--~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-R--LQLSNDNRTLTFNNVTR-SDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-C--EEEeCCCCEEEECcCCh-hhCEEEEEEEEcCCCCEEeee
Confidence 36789999999999999999 9999999999988643 3 22333445799999999 9999999999999998655 4
Q ss_pred EEEEE
Q psy2775 645 ARVTV 649 (785)
Q Consensus 645 ~~l~V 649 (785)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 55655
No 73
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.50 E-value=3.7e-13 Score=108.60 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=71.8
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~ 94 (785)
+..+|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+............ ..++|+|.+++.+|.|.|+|.|.|.
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTV----DIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecC----CEEEEEEecCCcccCEEEEEEEECC
Confidence 456777888999999999999999999999999999987655443222211 1256999999999999999999999
Q ss_pred CeeEEEEeeEEE
Q psy2775 95 EGEAKMDIPVKV 106 (785)
Q Consensus 95 ~~~~~~~~~v~v 106 (785)
.|.....+.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 999888877653
No 74
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=1.3e-13 Score=105.29 Aligned_cols=73 Identities=29% Similarity=0.442 Sum_probs=63.7
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+++.|.|.+.|.|.|.|.|+|++..+..+.++.+... .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~-------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD-------GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC-------CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999999999999999999998877777665432 24999999999999999999999999988887764
No 75
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.50 E-value=7.7e-14 Score=105.99 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=58.2
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
|+|.|.+.|.|.|.|+|+|+|..+..+.++.+.. ..+|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGV-ADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCCh-hhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999987665543322 34799999999 99999999999999999887766
No 76
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.50 E-value=3.5e-13 Score=110.13 Aligned_cols=87 Identities=20% Similarity=0.378 Sum_probs=72.3
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCC--ccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD--MHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~ 98 (785)
...+..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+.+........ ...+.++|+|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 6888999999999999999999999999999998765543322211 12344789999999999999999999999999
Q ss_pred EEEeeEEEe
Q psy2775 99 KMDIPVKVN 107 (785)
Q Consensus 99 ~~~~~v~v~ 107 (785)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 77
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.49 E-value=2.9e-13 Score=103.62 Aligned_cols=74 Identities=32% Similarity=0.526 Sum_probs=61.2
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|.|.|.+.|.|.|.|.|+|++..+.. +.++.+..++.. ..+|+|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSG---RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCC---cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999874 355555443321 146999999999999999999999999988887764
No 78
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.49 E-value=2.9e-13 Score=111.20 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=70.1
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC--CEEccC-----CCCEEEeecCCccceEEEEEEcccCCCCC
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN--GEPLQE-----TDEVVFSDQSDMHSYVSIVTIKSIKKREE 84 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 84 (785)
+|+|.. +.++.+.+|++++|.|.+.|.|.|.|.|+++ +..+.. ..++.+.... ..++|+|.+++.+|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~----~~~~L~I~~v~~~D~ 76 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH----GESSLHIKDVKLSDS 76 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC----CeeEEEEeeCCcCCC
Confidence 688865 7789999999999999999999999999994 333322 1233332221 124699999999999
Q ss_pred eEEEEEEEcCCeeEEEEeeEEE
Q psy2775 85 GVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 85 G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|.|+|.|.|..|....++.|.|
T Consensus 77 G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 77 GRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEEeccCCcceeEEEEeC
Confidence 9999999999998887766653
No 79
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.49 E-value=1.6e-13 Score=106.04 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=63.0
Q ss_pred CCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775 26 ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105 (785)
Q Consensus 26 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~ 105 (785)
+|+++.|.|.+.|.|.|.|.|++++..+....+..+... .+|+|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS-------GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC-------CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 699999999999999999999999998876555443222 3599999999999999999999999988887775
Q ss_pred E
Q psy2775 106 V 106 (785)
Q Consensus 106 v 106 (785)
|
T Consensus 74 V 74 (74)
T cd05745 74 V 74 (74)
T ss_pred C
Confidence 4
No 80
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.48 E-value=6e-13 Score=107.42 Aligned_cols=87 Identities=21% Similarity=0.438 Sum_probs=72.9
Q ss_pred ecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 17 KKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 17 ~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
..|..+.+.+|+++.|.|.+.|.|.+.+.|++++..+....++......+. .++|.|.+++.+|+|.|+|.|.|..|
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGK---YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCC---EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 356789999999999999999999999999999998877666555433321 14699999999999999999999999
Q ss_pred eEEEEeeEEE
Q psy2775 97 EAKMDIPVKV 106 (785)
Q Consensus 97 ~~~~~~~v~v 106 (785)
.+..++.|.|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 9988877754
No 81
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.48 E-value=1.5e-13 Score=106.81 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=59.8
Q ss_pred eeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 562 IERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 562 ~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
...++++.+.+|+++.|.|.+.|+|.| +|.|+|||.++... .....+.|.|..+ .|.|.|.|.|.|.+|.
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGL---NETSKFSCEAHNAKGV 72 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEccc---cCCeEEEEEEEeccCc
Confidence 345568899999999999999999999 79999999988541 1123357999876 5789999999999997
Q ss_pred eEE
Q psy2775 641 ATH 643 (785)
Q Consensus 641 ~~~ 643 (785)
..+
T Consensus 73 ~~s 75 (81)
T cd05749 73 TTS 75 (81)
T ss_pred EEe
Confidence 665
No 82
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.48 E-value=2.5e-13 Score=105.80 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=63.3
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+.|.|.+.|.|.|.+.|+|++..+..+.+..+...+....|.|.++.. +|+|.|+|.|.|..|.++.++.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY-EDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCc-ccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 479999999999999999999998765444344444556799999999 99999999999999999999999886
No 83
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=1.7e-13 Score=106.39 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=57.1
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++|.|.+.|.|.|.|+|+|+|...... ...++........|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKI-EDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCc-ccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998643222 111122222334799999999 9999999999999999999888887
No 84
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.47 E-value=4.4e-13 Score=110.10 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=70.2
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCC--CCeeEEee----CCeEEEEEccCCCCCCceeE
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSETDAGDY 630 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~--~~~~~~~~----~~~~~L~i~~~~~~~d~G~Y 630 (785)
||.+. ......+.+|++++|.|.+.|.|.| .|.|++++..+... .++.+... +..++|+|.++..++|.|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 35554 3456778999999999999999999 69999999988654 34444432 23468999999983448999
Q ss_pred EEEEEcCCcceEEEEEE
Q psy2775 631 KVVATNELGSATHGARV 647 (785)
Q Consensus 631 ~C~a~n~~g~~~~~~~l 647 (785)
+|.|.|..|.+..++.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998887765
No 85
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.47 E-value=5.4e-13 Score=111.28 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=63.4
Q ss_pred ecCeEEEEEEEecCCCCceEEEeCCEEecCC-CCeeEEe--e--CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIF--D--GENIILELKEADSETDAGDYKVVATNELGSATHGAR 646 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~--~--~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 646 (785)
.|.+++|.|.+.|.|.|.+.|+|||..+... .++.+.. . ...++|+|.++..++|.|.|+|.|.|..|.+..++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 4689999999999999999999999998643 3333221 1 124679999987328999999999999999988888
Q ss_pred EEEE
Q psy2775 647 VTVD 650 (785)
Q Consensus 647 l~V~ 650 (785)
|.|.
T Consensus 102 L~~~ 105 (109)
T cd05773 102 LVST 105 (109)
T ss_pred EEec
Confidence 8876
No 86
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.47 E-value=5.9e-13 Score=109.07 Aligned_cols=91 Identities=21% Similarity=0.354 Sum_probs=73.4
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC-----CEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD-----EVVFSDQSDMHSYVSIVTIKSIKKREEGV 86 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 86 (785)
.|+|...+....+..|++++|.|.+.|.|.|.++|++++..+.... ++.+... ...+.|.|.+++.+|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~----~~~~~L~I~~v~~~D~G~ 77 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH----ARVSSLTLKYIQYTDAGE 77 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC----ccEEEEEEecCccCcCEE
Confidence 5889888888888889999999999999999999999987764332 2222211 123579999999999999
Q ss_pred EEEEEEcCCeeEEEEeeEEE
Q psy2775 87 YTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 87 Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+|.|.|..|.+...+.|.|
T Consensus 78 Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 78 YLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEecCCCCeeEEEEEEC
Confidence 99999999999888877754
No 87
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=2.6e-13 Score=109.49 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=61.9
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEec--------CCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLL--------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~--------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 644 (785)
|++++|.|.+.|.|.|.+.|+|++..+. ...++.+ . ....|+|.++.. +|+|.|+|.|.|..|....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-~--~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-S--QTGDLTITNVQR-SDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-C--CCCeEEEeeCCh-hhCEEEEEEEEcCCCceEEE
Confidence 7899999999999999999999886531 1222222 1 234699999999 99999999999999999999
Q ss_pred EEEEEEee
Q psy2775 645 ARVTVDVE 652 (785)
Q Consensus 645 ~~l~V~~~ 652 (785)
+.|.|...
T Consensus 77 ~~l~V~~~ 84 (90)
T cd05726 77 AYLEVTDV 84 (90)
T ss_pred EEEEEeec
Confidence 99999843
No 88
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.47 E-value=2.4e-13 Score=106.31 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=65.0
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
+...+.+|+.++|.|.+.|. .|.|.|+|||.++..+.+..+ .+ ..|.|.++.. +|+|.|+|.|.|..|.....+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~--~~--~~L~I~~~~~-~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI--TG--EEVQIKDAVP-RDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE--eC--CEEEECCCCh-hhCEEEEEEEeCCCCcccEEE
Confidence 35678999999999999996 568999999999976655433 22 3699999999 999999999999999988777
Q ss_pred EEEE
Q psy2775 646 RVTV 649 (785)
Q Consensus 646 ~l~V 649 (785)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 6654
No 89
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.46 E-value=1.9e-13 Score=110.06 Aligned_cols=76 Identities=26% Similarity=0.436 Sum_probs=59.4
Q ss_pred cCeEEEEEEEecCCCCceEEEeCC----EEecCCCC-e-eEEe-------eCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNN----KPLLSSPK-K-REIF-------DGENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~----~~i~~~~~-~-~~~~-------~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
|+.++|.|.+.|.|.|.|+|+|++ ..+..+.. . .... .+...+|.|.+++. +|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence 678999999999999999999964 33322111 1 1111 12345799999999 999999999999999
Q ss_pred ceEEEEEEEE
Q psy2775 640 SATHGARVTV 649 (785)
Q Consensus 640 ~~~~~~~l~V 649 (785)
...+++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999999987
No 90
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=3.5e-13 Score=104.92 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=61.9
Q ss_pred CeEEEEEEEecC--CCCceEEEeCCEEecC--CCCeeEEee--CCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 574 GTIRLMAKVKAS--PAPSIVWFRNNKPLLS--SPKKREIFD--GENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 574 ~~v~l~C~~~g~--P~p~v~W~~~~~~i~~--~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
+++.|.|.+.+. +++.|.|+|||++|.. +........ ...+.|+|.+++. +|+|.|+|.|.|..++...++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccCceEEEEEE
Confidence 478999999874 5779999999999962 222222221 2345799999999 99999999999999999999999
Q ss_pred EEEe
Q psy2775 648 TVDV 651 (785)
Q Consensus 648 ~V~~ 651 (785)
.|++
T Consensus 80 ~V~~ 83 (85)
T cd05853 80 IVRG 83 (85)
T ss_pred EEec
Confidence 9983
No 91
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=1e-12 Score=104.95 Aligned_cols=86 Identities=20% Similarity=0.351 Sum_probs=69.4
Q ss_pred eecCCceEecCCCeEEEEEEEEecCCCeeEEEEC-CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN-GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~ 94 (785)
...|.++.+.+|+++.|.|.+.|.|. .+.|+++ +..+..+.++.+..++.. ++|+|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~----~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVR----SRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCe----eEEEEecCChHHCEEEEEEEEcC
Confidence 45678899999999999999999998 8999984 667766667666544322 46999999999999999999999
Q ss_pred CeeE-EEEeeEEE
Q psy2775 95 EGEA-KMDIPVKV 106 (785)
Q Consensus 95 ~~~~-~~~~~v~v 106 (785)
.|.. ..++.|.+
T Consensus 79 ~G~~~~~~i~l~~ 91 (92)
T cd05866 79 KGQTQEATVVLEI 91 (92)
T ss_pred CCcEEEEEEEEEE
Confidence 9875 45555554
No 92
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=5.6e-13 Score=106.28 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=62.3
Q ss_pred CeEEEEEEEecCCCC--ceEEEeCCEEecCCCC---ee-EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 574 GTIRLMAKVKASPAP--SIVWFRNNKPLLSSPK---KR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 574 ~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~~~---~~-~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
++++|.|.+.|.|.| .+.|+|+|..+..... +. .........|.|.+++. +|+|.|+|.|.|..|....++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCcEEEEEEE
Confidence 478999999999988 6799999998864321 11 22223456899999999 99999999999999999999999
Q ss_pred EEE
Q psy2775 648 TVD 650 (785)
Q Consensus 648 ~V~ 650 (785)
.|.
T Consensus 80 ~V~ 82 (85)
T cd04970 80 IVR 82 (85)
T ss_pred EEE
Confidence 987
No 93
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.46 E-value=9.7e-13 Score=109.52 Aligned_cols=94 Identities=24% Similarity=0.417 Sum_probs=69.6
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCC----CCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET----DEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
||+|...|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+... ....+....+. .....+.+..++.+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS-LFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCc-EEEEEeeccCCCcCcCEEE
Confidence 799999999999999999999999999999999999999988651 11122211111 1111122334478999999
Q ss_pred EEEEEcCCee-EEEEeeEEE
Q psy2775 88 TVVAKNREGE-AKMDIPVKV 106 (785)
Q Consensus 88 ~C~a~~~~~~-~~~~~~v~v 106 (785)
+|.|.|..|. .+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 555666665
No 94
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.45 E-value=2.5e-13 Score=104.47 Aligned_cols=70 Identities=31% Similarity=0.532 Sum_probs=58.7
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++|.|.+.|+|.|.+.|+|++..+..+. ........+|.|.++.. +|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~---~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR---TKFENFNKTLKIDNVSE-EDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc---eeEecCCCEEEECCCCH-HHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998875432 12233445799999999 9999999999999999998888877
No 95
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.45 E-value=2.3e-13 Score=103.58 Aligned_cols=69 Identities=22% Similarity=0.499 Sum_probs=57.6
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++|.|.+.|.|.|.+.|+|++..+... ++... ....|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTA-GDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCCh-hHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999999998876433 33333 334699999999 9999999999999999998888765
No 96
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.45 E-value=3.9e-13 Score=103.64 Aligned_cols=72 Identities=25% Similarity=0.483 Sum_probs=57.0
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce-EEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 649 (785)
++|.|.+.|+|.|.|+|+|++.++......++.. .....|.|.++.. +|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ-LRSGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE-cCCcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999886432222222 2334699999998 99999999999999985 56677766
No 97
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.45 E-value=4.9e-13 Score=107.80 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=60.0
Q ss_pred cCeEEEEEEEecCCCCceEEEeC----CEEecCCCC--eeEEe-------eCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRN----NKPLLSSPK--KREIF-------DGENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~----~~~i~~~~~--~~~~~-------~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
|+.++|.|.+.|.|.|.|+|+|+ +..+..+.. ..... .....+|+|.+++. +|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence 78999999999999999999994 444433222 11111 12336899999999 999999999999999
Q ss_pred ceEEEEEEEE
Q psy2775 640 SATHGARVTV 649 (785)
Q Consensus 640 ~~~~~~~l~V 649 (785)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999999887
No 98
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.45 E-value=1.5e-12 Score=106.97 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=73.8
Q ss_pred CCCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCC-CCeE
Q psy2775 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKR-EEGV 86 (785)
Q Consensus 11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~-D~G~ 86 (785)
+||.|.. +..+.+.+|+++.|.|.+.|.|.| .|.|++++..+... .++.+..........++|+|.+++.+ |.|.
T Consensus 1 ~pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 1 GPPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 4778854 567889999999999999999998 69999999988654 45555544333334568999999995 4999
Q ss_pred EEEEEEcCCeeEEEEeeE
Q psy2775 87 YTVVAKNREGEAKMDIPV 104 (785)
Q Consensus 87 Y~C~a~~~~~~~~~~~~v 104 (785)
|.|.|.|..|.+...+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999988776654
No 99
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.45 E-value=1.1e-12 Score=100.14 Aligned_cols=71 Identities=21% Similarity=0.453 Sum_probs=60.8
Q ss_pred eEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 29 EVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 29 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
+++|.|.+.|.|.|.++|++++..+....++.+...+ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~-------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH-------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC-------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4899999999999999999999988776666654433 2788899999999999999999999988877754
No 100
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=1.2e-12 Score=105.74 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=64.6
Q ss_pred eeeeeeeeecCeEEEEEEEecCCCCceEEEe-CCEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEcCCcc-
Q psy2775 564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGS- 640 (785)
Q Consensus 564 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~- 640 (785)
.+....+..|+++.|.|.+.|.|+ .+.|++ ++..+....+...... +..++|+|.+++. +|+|.|+|.|.|..|.
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKGTE 83 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCCCc
Confidence 345678999999999999999974 999998 6766665555544433 3457899999999 9999999999999754
Q ss_pred eEEEEEEE
Q psy2775 641 ATHGARVT 648 (785)
Q Consensus 641 ~~~~~~l~ 648 (785)
...++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 45555544
No 101
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.44 E-value=9.4e-13 Score=108.21 Aligned_cols=90 Identities=24% Similarity=0.386 Sum_probs=71.4
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC-----CEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD-----EVVFSDQSDMHSYVSIVTIKSIKKREEGV 86 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 86 (785)
+|+|. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.... ++.+... ...++|+|.+++.+|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~ 76 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH----ARVSSLTLKDVQLTDAGR 76 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC----ccEEEEEECcCCcCcCEE
Confidence 68885 5668999999999999999999999999999986664332 2222111 123679999999999999
Q ss_pred EEEEEEcCCeeEEEEeeEEE
Q psy2775 87 YTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 87 Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+|.|.|..|....++.|.|
T Consensus 77 Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 77 YDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred eEEEEEeCCCCcEEEEEEeC
Confidence 99999999999887776653
No 102
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.44 E-value=9.4e-13 Score=101.02 Aligned_cols=74 Identities=31% Similarity=0.487 Sum_probs=60.7
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+|.|.+.|.|.|.|.|+|++..+... .++.+...+. ...+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNC---GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCC---CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988654 4455543332 1246999999999999999999999999988887764
No 103
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.44 E-value=1.5e-12 Score=105.53 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=66.5
Q ss_pred CCeeeecCCceEec---CCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccC-CCCCeEE
Q psy2775 12 PPTFSKKTKPVYAE---ENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK-KREEGVY 87 (785)
Q Consensus 12 ~p~~~~~~~~~~v~---~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y 87 (785)
.|.|...|.++.+. +|++++|.|.+.|.|.|.|+|++++..+.......+...+ ..|.|.++. .+|+|.|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~------g~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID------GNLIISNPSEVKDSGRY 74 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC------CeEEEccCCccCcCEEE
Confidence 38899999998775 4789999999999999999999999988654433332222 248898875 6999999
Q ss_pred EEEEEcCCeeEEE
Q psy2775 88 TVVAKNREGEAKM 100 (785)
Q Consensus 88 ~C~a~~~~~~~~~ 100 (785)
+|.|.|..|...+
T Consensus 75 ~C~A~N~~G~~~S 87 (94)
T cd05848 75 QCLATNSIGSILS 87 (94)
T ss_pred EEEEEcCCCeEEe
Confidence 9999999997754
No 104
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=7e-13 Score=108.35 Aligned_cols=86 Identities=27% Similarity=0.442 Sum_probs=64.5
Q ss_pred EeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCe-eEEeeCCeEEEEEccC-----CCCCCceeEEEEE
Q psy2775 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEA-----DSETDAGDYKVVA 634 (785)
Q Consensus 561 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~-~~~~~~~~~~L~i~~~-----~~~~d~G~Y~C~a 634 (785)
|+..+.+..+.+|++++|.|.+.|.|.|.|+|+|||..+....+. .....++ .|.|.++ .. +|+|.|+|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~-~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNK-PDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCC-CcCEEEEEEE
Confidence 445566788899999999999999999999999999998754432 2222222 3556555 46 8999999999
Q ss_pred EcC-Ccce-EEEEEEEE
Q psy2775 635 TNE-LGSA-THGARVTV 649 (785)
Q Consensus 635 ~n~-~g~~-~~~~~l~V 649 (785)
.|. .|.. ...+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 9987 33455543
No 105
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.44 E-value=6e-13 Score=105.95 Aligned_cols=79 Identities=25% Similarity=0.428 Sum_probs=64.8
Q ss_pred eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
.....|++++|.|.+.|.|.|.+.|+|++..+...... .......+|.|.++.. +|+|.|+|.|.|..|....++.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~--~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG--ESRKKKWTLSLKNLKP-EDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc--eecCceEEEEEccCCh-hhCEEEEEEEEcCCccEEEEEEE
Confidence 34667999999999999999999999999887544322 1223456899999999 99999999999999988877776
Q ss_pred EE
Q psy2775 648 TV 649 (785)
Q Consensus 648 ~V 649 (785)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 54
No 106
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.44 E-value=1.9e-12 Score=107.99 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=75.6
Q ss_pred CCCCeeeecCCceEe----cCCCeEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccC-CCC
Q psy2775 10 GIPPTFSKKTKPVYA----EENSEVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIK-KRE 83 (785)
Q Consensus 10 ~~~p~~~~~~~~~~v----~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~-~~D 83 (785)
..||.|...|....+ ..|.+++|.|.+.|.|.+.+.|++++..+... .++.+..........++|+|.+++ .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 458999887774333 25689999999999999999999999988643 344433222222234679999997 599
Q ss_pred CeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 84 EGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 84 ~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
.|.|+|.|.|..|.+...+.|.+.
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEec
Confidence 999999999999999998888886
No 107
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.44 E-value=7.6e-13 Score=102.51 Aligned_cols=73 Identities=25% Similarity=0.486 Sum_probs=59.0
Q ss_pred cCeEEEEEEEecCCCCceEEEe-CCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~-~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+.++|.|.+.|.|.|.+.|++ ++..+....+.. ... ..+|.|.++.. +|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~-~~~--~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL-VYD--NGTLDILITTV-KDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE-Eec--CCEEEEEECCh-hhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 566665444332 222 24699999998 9999999999999999888777764
No 108
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.43 E-value=6.9e-13 Score=98.31 Aligned_cols=66 Identities=26% Similarity=0.495 Sum_probs=56.2
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
++|.|.+.|.|.|.++|+|+|..+.... ..+.|.|.++..+|+|.|+|.|+|..|....++.+++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999999999999999999885321 11469999999999999999999999988887777664
No 109
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.43 E-value=8.2e-13 Score=106.12 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=64.2
Q ss_pred eeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEE-
Q psy2775 566 EEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH- 643 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~- 643 (785)
.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+........... ...|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--DGNLLIAEARK-SDEGTYKCVATNMVGERESA 80 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--CCEEEEeECCc-ccCEEEEEEEEeccCceeee
Confidence 46788999999999998 7999999999999999876433222222 34699999999 9999999999999998654
Q ss_pred EEEEE
Q psy2775 644 GARVT 648 (785)
Q Consensus 644 ~~~l~ 648 (785)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 44443
No 110
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.42 E-value=8e-13 Score=99.46 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=55.8
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
++|.|.+.|+|.|++.|+|+|.++..+... ....+ .+|.|.++.. +|+|.|+|.|+|..........+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v~~-~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDVTE-EDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcCCH-HHCEEEEEEEEccccceEeeEEEEE
Confidence 479999999999999999999998764322 22222 3699999999 9999999999999776666555554
No 111
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.42 E-value=6.8e-13 Score=103.35 Aligned_cols=70 Identities=29% Similarity=0.434 Sum_probs=58.4
Q ss_pred EEEEEEEec-CCCCceEEEeCCEEecCCCCee---EEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775 576 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKR---EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646 (785)
Q Consensus 576 v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~---~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 646 (785)
+.|.|.+.| .|.|.+.|+|+|.++..+.+.. +.......+|.|.++.. +|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKL-ADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCc-ccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 9999999999999987655432 22334567899999999 9999999999999999887665
No 112
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.42 E-value=2.5e-12 Score=99.57 Aligned_cols=74 Identities=32% Similarity=0.565 Sum_probs=63.3
Q ss_pred eEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 29 EVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 29 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
++.|.|.+.|.|.|.+.|++++..+....++.+..... .++|.|.+++.+|+|.|+|.|.|..|.++..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999987777666654432 267999999999999999999999999888877754
No 113
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=2e-12 Score=100.42 Aligned_cols=74 Identities=24% Similarity=0.486 Sum_probs=61.1
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~ 105 (785)
|++++|.|.+.|.|.|.++|++++..+...... ...... ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS------GALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC------CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 789999999999999999999999988654321 111111 3599999999999999999999999998888887
Q ss_pred E
Q psy2775 106 V 106 (785)
Q Consensus 106 v 106 (785)
|
T Consensus 75 V 75 (76)
T cd05867 75 V 75 (76)
T ss_pred E
Confidence 6
No 114
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.41 E-value=1.2e-12 Score=102.31 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=65.8
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~ 98 (785)
|+...+.+|++++|.|.+.+. .+.+.|+|+|.++....++.+.. .+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~--------~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG--------EEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC--------CEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 567899999999999999886 56899999999987766655432 249999999999999999999998887
Q ss_pred EEEeeEEE
Q psy2775 99 KMDIPVKV 106 (785)
Q Consensus 99 ~~~~~v~v 106 (785)
...+.|+|
T Consensus 72 ~~~~~v~V 79 (79)
T cd04973 72 TTYFSVNV 79 (79)
T ss_pred cEEEEEeC
Confidence 77666553
No 115
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.41 E-value=6.5e-13 Score=106.99 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=64.7
Q ss_pred eeeeeecCeEEEEEEEec-----CCCCceEEEeCCEEecCC--CCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 567 EKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~i~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
...+.+|+++.|.|.+.| .|.|.|.|||++..+... .+.++... ...|.|.++.. +|+|.|+|.|.|..|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~-~DsG~Y~C~~~N~~g 84 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAAL-EDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCc-ccCeEEEEEEcCCCc
Confidence 567889999999999999 689999999999765321 12222222 35799999999 999999999999999
Q ss_pred ceEEEEEEEE
Q psy2775 640 SATHGARVTV 649 (785)
Q Consensus 640 ~~~~~~~l~V 649 (785)
..+.++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9998887765
No 116
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.41 E-value=4e-12 Score=103.08 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=65.8
Q ss_pred CCeeeecCCceEecCC---CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccC-CCCCeEE
Q psy2775 12 PPTFSKKTKPVYAEEN---SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK-KREEGVY 87 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y 87 (785)
.|.|...|..+.+.+| ++++|.|.+.|.|.+.|+|+++|..+.......+...+ ..|.|.++. .+|+|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~------g~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA------GNLVINNPQKARDAGSY 74 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC------CeEEEccCCccCcCEEE
Confidence 4889999999988776 58999999999999999999999988643322222212 248898765 5999999
Q ss_pred EEEEEcCCeeEEE
Q psy2775 88 TVVAKNREGEAKM 100 (785)
Q Consensus 88 ~C~a~~~~~~~~~ 100 (785)
+|.|.|..|...+
T Consensus 75 ~C~A~N~~G~~~s 87 (94)
T cd05850 75 QCLAINRCGTVVS 87 (94)
T ss_pred EEEEEcCcCcEEE
Confidence 9999999997654
No 117
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.41 E-value=1.2e-12 Score=101.32 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=51.4
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCC---CCceeEEEEEEcCCcceEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE---TDAGDYKVVATNELGSATH 643 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~---~d~G~Y~C~a~n~~g~~~~ 643 (785)
+.|.|.+.|.|.|+|+|+|+|.++..............++|.|..+... .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4799999999999999999999885443333333334456777766531 3789999999999998665
No 118
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.41 E-value=2.4e-12 Score=103.17 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=68.4
Q ss_pred CCeeee--cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775 12 PPTFSK--KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89 (785)
Q Consensus 12 ~p~~~~--~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 89 (785)
.|.|+. .+.++.+.+|++++|.|.+.|. .|.|.|++++..+... +..+...+ .+|+|.+++.+|+|.|+|
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~------~~L~I~~v~~~D~G~Y~C 72 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDN------RTLTFNNVTRSDTGHYQC 72 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCC------CEEEECcCChhhCEEEEE
Confidence 367754 4567999999999999999999 9999999999887543 34433222 359999999999999999
Q ss_pred EEEcCCeeEEE-EeeEEE
Q psy2775 90 VAKNREGEAKM-DIPVKV 106 (785)
Q Consensus 90 ~a~~~~~~~~~-~~~v~v 106 (785)
.|.|..|.... .+.|.|
T Consensus 73 ~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 73 EASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEcCCCCEEeeeEEEEe
Confidence 99999997544 455554
No 119
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.41 E-value=1.1e-12 Score=101.52 Aligned_cols=69 Identities=26% Similarity=0.408 Sum_probs=51.5
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCC---CCCCceeEEEEEEcCCcceEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD---SETDAGDYKVVATNELGSATHG 644 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~---~~~d~G~Y~C~a~n~~g~~~~~ 644 (785)
+.|.|.+.|+|.|+|+|+|+|..+.......+.......+|.|..+. .++|+|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999997743322223333344578888753 2257999999999999977654
No 120
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=1e-12 Score=104.14 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=57.9
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCE---Ee-cCCCC-eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNK---PL-LSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~---~i-~~~~~-~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
|++++|.|.+.|.|.|.++|+|++. .+ ..... ...........|+|.++.. +|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP-QDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCc-ccCEEEEEEEecCCceEEEEEEE
Confidence 7899999999999999999999742 11 11111 1111122346799999999 99999999999999999988888
Q ss_pred EE
Q psy2775 648 TV 649 (785)
Q Consensus 648 ~V 649 (785)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 121
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.40 E-value=8.1e-13 Score=102.72 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=53.2
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCC---CCCceeEEEEEEcCCcceEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS---ETDAGDYKVVATNELGSATH 643 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~---~~d~G~Y~C~a~n~~g~~~~ 643 (785)
++|.|.+.|+|.|+|+|+|||..+.......+......++|.|.++.. ++|+|.|+|.|.|..|+..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 479999999999999999999998654433344444556788887642 26899999999999997655
No 122
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=2.1e-12 Score=99.95 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=61.1
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~ 105 (785)
|++++|.|.+.|.|.|.|.|++++.++..... .....++ ..|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG------DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC------CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 78999999999999999999999998854321 1111122 2489999999999999999999999999998887
Q ss_pred E
Q psy2775 106 V 106 (785)
Q Consensus 106 v 106 (785)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 7
No 123
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.40 E-value=3.5e-12 Score=99.63 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=64.1
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+++.|.|.+.|.|.|.+.|++++..+....++.+...++ .++|+|.+++.+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGG----YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCC----EEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999998887776665554332 256999999999999999999999998877666554
No 124
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=2.3e-12 Score=99.32 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=63.3
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+++.|.|.+.|.|.+.+.|++++..+....++.+... .+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD-------GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC-------CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999999999999999999998877766665432 24999999999999999999999999888877754
No 125
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.39 E-value=3.7e-12 Score=98.20 Aligned_cols=74 Identities=31% Similarity=0.473 Sum_probs=60.1
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccC-CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQE-TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
++|.|.+.|.|.|.|.|+|++..+.. ..++.+...+.. ..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG---RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999999999999999998874 345554433221 245999999999999999999999999888877754
No 126
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.39 E-value=3.1e-12 Score=98.06 Aligned_cols=74 Identities=23% Similarity=0.461 Sum_probs=58.8
Q ss_pred EEEEEEecCCCeeEEEECCEEccCCCCEEEee-cCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775 32 LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSD-QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105 (785)
Q Consensus 32 l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~ 105 (785)
|.|++.|.|.|.|+|||+|..|..+.+..... ......+.++|.|.++..+|+|.|+|.|+|..|++..++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 78999999999999999999998776543221 111222346799999999999999999999999888776654
No 127
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=4.5e-12 Score=102.12 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=65.5
Q ss_pred CCeeeecCCceEecCCC---eEEEEEEEEecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccC-CCCCeE
Q psy2775 12 PPTFSKKTKPVYAEENS---EVTLEVRLVAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIK-KREEGV 86 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~---~v~l~C~~~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~ 86 (785)
+|.|...|..+.+.+|. .+.|.|.+.|.|.|.|+|++++..+... .++.+. + +.|.|.++. .+|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~------g~L~I~~~~~~~D~G~ 72 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G------GNLVINNPDKYKDAGR 72 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C------CEEEECcCCcCCCCEE
Confidence 58999999988777655 8999999999999999999999887543 333221 1 349999985 689999
Q ss_pred EEEEEEcCCeeEEE
Q psy2775 87 YTVVAKNREGEAKM 100 (785)
Q Consensus 87 Y~C~a~~~~~~~~~ 100 (785)
|+|.|.|..|....
T Consensus 73 Y~C~A~N~~G~~~s 86 (93)
T cd05849 73 YVCIVSNIYGKVRS 86 (93)
T ss_pred EEEEEEeCcceEEE
Confidence 99999999997654
No 128
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.38 E-value=6.1e-12 Score=101.54 Aligned_cols=87 Identities=20% Similarity=0.368 Sum_probs=66.0
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCCeeEEEE-CCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~ 93 (785)
+...|....+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+. ..++|+|.+++.+|+|.|+|.|.|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDD---VRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCC---CEEEEEEecCCcccCEEEEEEEEc
Confidence 455788899999999999999999875 899998 565565545554433322 236799999999999999999999
Q ss_pred CCee-EEEEeeEE
Q psy2775 94 REGE-AKMDIPVK 105 (785)
Q Consensus 94 ~~~~-~~~~~~v~ 105 (785)
..|. ...++.|.
T Consensus 79 ~~g~~~~~sv~l~ 91 (92)
T cd04977 79 AKGTESEATVNLK 91 (92)
T ss_pred CCCCcceeEEEEE
Confidence 8653 45555443
No 129
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.38 E-value=5.9e-12 Score=100.73 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=66.4
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEE
Q psy2775 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~ 99 (785)
.+.|.+|+++.|.|.+.|.|.|.+.|++++..+....+.. +.... ...+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC----CceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 4678999999999999999999999999999887654431 11111 124599999999999999999999999988
Q ss_pred EEeeEEE
Q psy2775 100 MDIPVKV 106 (785)
Q Consensus 100 ~~~~v~v 106 (785)
..+.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 8877754
No 130
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.37 E-value=4.5e-12 Score=102.49 Aligned_cols=83 Identities=27% Similarity=0.515 Sum_probs=63.3
Q ss_pred CeEeeeeeeeeeeec---CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775 559 PLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635 (785)
Q Consensus 559 p~~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 635 (785)
|.|+..+.+..+.++ ++++|.|.+.|+|.|.|+|+|++..+...........+ ..|.|.++...+|+|.|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEE
Confidence 778887777766554 67999999999999999999999988543222222222 3588887763289999999999
Q ss_pred cCCcceEE
Q psy2775 636 NELGSATH 643 (785)
Q Consensus 636 n~~g~~~~ 643 (785)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997654
No 131
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.37 E-value=5.4e-12 Score=111.34 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=84.3
Q ss_pred EEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEecc-CC-CeEEEeEC
Q psy2775 73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE-PS-PKVEWYKD 150 (785)
Q Consensus 73 ~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~-p~-~~v~W~~~ 150 (785)
.|+|.+++.+|+|.|.|.+.+..+.....+.|.|. .+|.+...+.......|+.+.|.|.+.|. |. +.|+|+++
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 49999999999999999999988888888888887 56777665555555578999999999885 54 48999999
Q ss_pred CEEccc------ce----E-EEeCC----EEEEEEcccCCCCcEEEEEEEEcCC
Q psy2775 151 GKLIKD------RQ----I-TSEKN----THTLTLIQCSTKDKGRYSVKVTNKE 189 (785)
Q Consensus 151 g~~~~~------~~----~-~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~ 189 (785)
|..... .. . ...++ .+.|.|.....++.+.|+|++.+..
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 854211 10 1 11111 3467777666667889999998764
No 132
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.37 E-value=5.1e-12 Score=98.65 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=61.8
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
|++++|.|.+.|.|.|.|.|++++..+............ ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD-----GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEcc-----CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999988655432111111 145999999999999999999999999988888876
No 133
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=2.9e-12 Score=97.84 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=59.8
Q ss_pred EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200 (785)
Q Consensus 131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 200 (785)
+.|.|.+.|.|.|.+.|++++..+............+|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999998776543333344568999999999999999999999999888888876
No 134
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=8.6e-12 Score=99.91 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCC--CCeeEEee----CCeEEEEEccCCCCCC-cee
Q psy2775 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSETD-AGD 629 (785)
Q Consensus 558 ~p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~--~~~~~~~~----~~~~~L~i~~~~~~~d-~G~ 629 (785)
||.+ .....+.+.+|++++|.|.+.+.|+| .|.|.+++..|..+ .++.+... +..++|+|.++.. .| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcE
Confidence 3555 55567789999999999999999998 68999988877553 35544432 4678999999987 56 799
Q ss_pred EEEEEEcCCcceEEEEEE
Q psy2775 630 YKVVATNELGSATHGARV 647 (785)
Q Consensus 630 Y~C~a~n~~g~~~~~~~l 647 (785)
|.|.|.|..|++...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999887765
No 135
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.36 E-value=6.8e-12 Score=97.82 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=59.1
Q ss_pred EEEEEEecCCCeeEEEECCEEccCCCCEEEeecCC---ccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEE
Q psy2775 32 LEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD---MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVK 105 (785)
Q Consensus 32 l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~ 105 (785)
|.|.+.|.|.|.|+|+|+|..+............. .....+.|+|.+++.+|+|.|+|.|.|..|.+..++.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 68999999999999999999997766543322111 222346799999999999999999999999988877654
No 136
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.35 E-value=8e-12 Score=98.91 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=60.7
Q ss_pred CeEEEEEEEEecCCC--eeEEEECCEEccCCC---CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEe
Q psy2775 28 SEVTLEVRLVAVPEP--DLLWYYNGEPLQETD---EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102 (785)
Q Consensus 28 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~ 102 (785)
++++|.|.+.|.|.| .+.|++++..+.... ++...... ...++|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVK---ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEec---ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 579999999999886 589999998875432 22111111 1125699999999999999999999999999999
Q ss_pred eEEEe
Q psy2775 103 PVKVN 107 (785)
Q Consensus 103 ~v~v~ 107 (785)
.|.|.
T Consensus 78 ~L~V~ 82 (85)
T cd05854 78 TLVVR 82 (85)
T ss_pred EEEEE
Confidence 99987
No 137
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.35 E-value=5.3e-12 Score=96.14 Aligned_cols=70 Identities=29% Similarity=0.552 Sum_probs=58.3
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+.|.|.+.|.|.|.+.|+|++..+....+... .. .+|.|.+++.+|+|.|+|.|.|..|....++++++.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~--~~------~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK--SG------HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc--CC------CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47999999999999999999999876643321 11 359999999999999999999999988877777664
No 138
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.33 E-value=8.5e-12 Score=96.93 Aligned_cols=74 Identities=23% Similarity=0.512 Sum_probs=60.5
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~ 93 (785)
|...|+++.+.+|+++.|.|.+.|.|.| .|.|++++.++.... .. ..+.|+|..+ .|+|.|.|.|.|
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~----~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------AP----SPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CC----CCCEEEEccc--cCCeEEEEEEEe
Confidence 5678999999999999999999999999 799999999885411 00 1145999887 478999999999
Q ss_pred CCeeEEE
Q psy2775 94 REGEAKM 100 (785)
Q Consensus 94 ~~~~~~~ 100 (785)
..|....
T Consensus 69 ~~G~~~s 75 (81)
T cd05749 69 AKGVTTS 75 (81)
T ss_pred ccCcEEe
Confidence 9996554
No 139
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.33 E-value=8.6e-12 Score=99.21 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=64.1
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM 100 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~ 100 (785)
.+.+..|++++|.|.+.|.|.|.+.|++++..+......... ....+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 76 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR------KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA 76 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec------CceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence 456778999999999999999999999999877544332211 11256999999999999999999999998877
Q ss_pred EeeEEE
Q psy2775 101 DIPVKV 106 (785)
Q Consensus 101 ~~~v~v 106 (785)
.+.|.|
T Consensus 77 ~~~v~v 82 (82)
T cd05856 77 TYKVDV 82 (82)
T ss_pred EEEEeC
Confidence 776653
No 140
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.33 E-value=9e-07 Score=107.28 Aligned_cols=498 Identities=15% Similarity=0.183 Sum_probs=268.8
Q ss_pred CCCeEEEEE--EEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceE
Q psy2775 82 REEGVYTVV--AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI 159 (785)
Q Consensus 82 ~D~G~Y~C~--a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~ 159 (785)
...|.|... |.|..|.......+.|.. + ...+........+..+..+.|.-......+..+.|.+++.....
T Consensus 1481 ~~~GtYtVtLTvtN~~Gsst~T~~VtV~~--p-V~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~--- 1554 (2740)
T TIGR00864 1481 NSPGDFNIRLAAANEVGKNEATLNVAVKA--R-VRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPI--- 1554 (2740)
T ss_pred CCCceEEEEEEEECCCCceEEEEEEEEec--c-ccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCccc---
Confidence 458888764 457777766666666653 1 11233333333445566787875443334568999885432111
Q ss_pred EEeCCEEEEEEcccCCCCcEEEEE--EEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCe
Q psy2775 160 TSEKNTHTLTLIQCSTKDKGRYSV--KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS 237 (785)
Q Consensus 160 ~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 237 (785)
........ +....|.|+. .|.|..|....+..+.|+..... ..|......-...
T Consensus 1555 -~~npt~~y-----TY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~G-----------------lqI~~~~~~gg~~- 1610 (2740)
T TIGR00864 1555 -FGGNTIFY-----TFRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEG-----------------LQILGETAEGGGG- 1610 (2740)
T ss_pred -cCCCceEE-----eecCCceEEEEEEEecCCCccceeEEEEEeecccc-----------------eEEEeecccccCC-
Confidence 01111112 2235588865 56688888888887877643210 0000000000000
Q ss_pred eeecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccc-eEEEeCCEEEEEEccCCCCCCeEEEE--EEEeCCCce
Q psy2775 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QITSEKNTHTLTLIQCSTKDKGRYSV--KVTNKEGTV 314 (785)
Q Consensus 238 ~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~~n~~g~~ 314 (785)
-...+....+..+..+.|+-.+..-....+.|...+..-... .....+....++. .+.|.|.. .+.|..|..
T Consensus 1611 ~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~~tGk~~~vt~-----~~pG~Y~VtL~aSN~vG~~ 1685 (2740)
T TIGR00864 1611 GVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFAGSGKGAKLNP-----LEAGPCDIFLQAANLLGQA 1685 (2740)
T ss_pred cccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCccccccCceeEEec-----CCCceEEEEEEEeecccce
Confidence 000011123445666777765544345578886621110000 0111222222322 45577755 456889999
Q ss_pred EEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-CCCeEEEEECCEE-cCCCCcEEEEEcCcEEEEEEcCCCCCC
Q psy2775 315 ESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-DKADVKWFKDGQE-IKTSKKVTIEKKGTIRKLLIRNISVHD 392 (785)
Q Consensus 315 ~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~l~i~~~~~~d 392 (785)
..+..+.+.++-..+........+..|+.+.|.-.... ....++|..++.. ........ .+ +...
T Consensus 1686 t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------tH-------tf~~ 1752 (2740)
T TIGR00864 1686 TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------SH-------SFPS 1752 (2740)
T ss_pred eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------EE-------EccC
Confidence 88888888875555555555666778999998876654 6779999876532 11111100 00 1223
Q ss_pred ceEEEEE--EeccceE----EEEEEEecCCcccccCCC----eEEecCCcEEEEEEEeCC-CceEEEEECCEEcccCCCE
Q psy2775 393 EGEYTCS--LPDQETS----AELNVVELPPEISVPLQD----VKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENV 461 (785)
Q Consensus 393 ~G~Y~C~--a~n~~~~----~~~~v~~~~~~~~~~~~~----~~v~~g~~~~l~C~~~~~-~~~i~W~~~~~~~~~~~~~ 461 (785)
.|.|.-. |.|..++ ..+.|.+....+.+.... ..+..|.++.|.-.+..+ +..+.|.+++..-..
T Consensus 1753 ~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~---- 1828 (2740)
T TIGR00864 1753 AGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM---- 1828 (2740)
T ss_pred CceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc----
Confidence 6777554 4454333 333343333222222111 135567788887776554 556888886543111
Q ss_pred EEEEeCcEEEEEEccCCCCCcEEEEEE--Eeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEec-CCce
Q psy2775 462 TLSIDGKKQKLIIFSAGLEDAGEYSCR--VGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS-SPDI 537 (785)
Q Consensus 462 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~--a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 537 (785)
+.... .+..++|.|+-. |.|. +....+..+.|+.+...+... ..-.....+..++|++.++ ++.+
T Consensus 1829 -----gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~-as~~~~~~n~~v~fsa~l~~GS~V 1897 (2740)
T TIGR00864 1829 -----GKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELK-ASKKIAAIGEKVEFQILLAAGSAV 1897 (2740)
T ss_pred -----cceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEe-cccccccCCCEEEEEEEecCCCce
Confidence 11111 345788998765 5687 888889999999886554443 3333455677889999886 5889
Q ss_pred eeEEeecccccccC---------CCCCC---------------CCCe---Eeeeeeee--------eeeecCeEEEEEEE
Q psy2775 538 QVKWLNLFIVPTCP---------LGSPG---------------QAPL---FIERFEEK--------TVKEKGTIRLMAKV 582 (785)
Q Consensus 538 ~~~W~~~~~~~~~~---------~~~~~---------------~~p~---~~~~~~~~--------~v~~g~~v~l~C~~ 582 (785)
.+.|..++....-. ....+ ++.. ++.+.+.. -+..|+..+|...+
T Consensus 1898 tf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v 1977 (2740)
T TIGR00864 1898 NFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANV 1977 (2740)
T ss_pred EEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEE
Confidence 99999775431100 00000 1111 11111111 14668888898887
Q ss_pred ecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEE--EEEEcCCcceEEEEEEEEE
Q psy2775 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK--VVATNELGSATHGARVTVD 650 (785)
Q Consensus 583 ~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~ 650 (785)
.-.-+..+.|+.+-..+..+.. .+..+...+.+. ...|.|. ..|.|..|....+..|.|+
T Consensus 1978 ~~g~~V~f~W~f~~~~~~g~~~--~~~~G~~vty~~------~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864 1978 QRGKPVAFAWTFDLHHLHGDSL--VIHMGKDVSYTA------EAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred ecCCceEEEEEeeecccCCCcc--eeecCCceEEcc------CCCcEEEEEEEEEcccCcccccEEEEEE
Confidence 6444457999865443322221 233344433333 4578876 5677999998777777776
No 141
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.33 E-value=6.9e-12 Score=95.22 Aligned_cols=68 Identities=24% Similarity=0.465 Sum_probs=58.1
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v 104 (785)
|.|.|.+.|.|.|.|.|++++..+....++.+... ++|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE-------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC-------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999998877666655332 359999999999999999999999988877654
No 142
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.32 E-value=1.3e-11 Score=93.05 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=55.3
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v 104 (785)
|++++|.|.+.|.|.|.|.|++++..+....+... + ...|+|.+++ |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---~-----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---G-----RNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---C-----ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 78999999999999999999999998865543321 1 1358999874 8999999999999988777655
No 143
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.32 E-value=6.5e-12 Score=99.88 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=60.6
Q ss_pred cCeEEEEEEEecC--CCCceEEEeCCEEecCCCCe---eE--EeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 573 KGTIRLMAKVKAS--PAPSIVWFRNNKPLLSSPKK---RE--IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 573 g~~v~l~C~~~g~--P~p~v~W~~~~~~i~~~~~~---~~--~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
|++++|.|.+.|. |.|.++|++++..+...... .. ......++|+|.+++. +|+|.|+|.|+|..|....++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCceEEEE
Confidence 7899999999999 88899999988765322110 11 1122456899999999 999999999999999999998
Q ss_pred EEEE
Q psy2775 646 RVTV 649 (785)
Q Consensus 646 ~l~V 649 (785)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8877
No 144
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.32 E-value=5.2e-12 Score=97.55 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=55.7
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCC-ceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
|.+...++...+.+|++++|.|.+.|.|.+ .+.|+|||..+.. ....|.|.++ . +|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~-~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-N-NDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-c-cCCEEeEEECCCC
Confidence 445566677899999999999999999875 7999999998732 2345899999 7 9999999999986
No 145
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.31 E-value=1.6e-11 Score=100.37 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=64.9
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEccc-----CCCCCeEE
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSI-----KKREEGVY 87 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~-----~~~D~G~Y 87 (785)
|...|....+.+|+++.|.|.+.|.|.+.|.|+|++..+..... ..+..++ +|.|.++ ..+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-------~l~i~~v~~~~~~~~D~G~Y 74 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-------SLLITSVVHSKHNKPDEGFY 74 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-------eEEEeeeeccCCCCCcCEEE
Confidence 67789999999999999999999999999999999998865443 2222221 2555555 68999999
Q ss_pred EEEEEcC-CeeE-EEEeeEE
Q psy2775 88 TVVAKNR-EGEA-KMDIPVK 105 (785)
Q Consensus 88 ~C~a~~~-~~~~-~~~~~v~ 105 (785)
+|.|.|. .|.. +..+.|.
T Consensus 75 ~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 75 QCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEEEECCccCcEEEeeeEEe
Confidence 9999999 8865 3344443
No 146
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.31 E-value=8.5e-12 Score=93.91 Aligned_cols=69 Identities=32% Similarity=0.517 Sum_probs=57.2
Q ss_pred EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201 (785)
Q Consensus 131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 201 (785)
+.|.|.+.|.|.|.++|+|||.++...... .....|.|.++..+|+|.|+|.|.|..|..+...++++.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999999998754322 123479999999999999999999999988777666653
No 147
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.31 E-value=1.8e-11 Score=95.07 Aligned_cols=71 Identities=24% Similarity=0.499 Sum_probs=56.0
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE--EeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM--DIPVKV 106 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~--~~~v~v 106 (785)
++|.|.+.|.|.|.|.|+|++.++.... +..+.... .+|.|.+++.+|+|.|+|.|.|..|.... .++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKE------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCC------CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999886654 23332221 35999999999999999999999997654 455555
No 148
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.30 E-value=1.5e-11 Score=99.25 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=61.2
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEcc--------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQ--------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~ 98 (785)
|++++|.|.+.|.|.|.+.|++++..+. ...++.+... ..|+|.+++.+|+|.|+|.|.|..|..
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 73 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT-------GDLTITNVQRSDVGYYICQTLNVAGSI 73 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC-------CeEEEeeCChhhCEEEEEEEEcCCCce
Confidence 7899999999999999999999886431 1223332211 349999999999999999999999999
Q ss_pred EEEeeEEEeCC
Q psy2775 99 KMDIPVKVNTG 109 (785)
Q Consensus 99 ~~~~~v~v~~~ 109 (785)
...+.|.|...
T Consensus 74 ~~~~~l~V~~~ 84 (90)
T cd05726 74 LTKAYLEVTDV 84 (90)
T ss_pred EEEEEEEEeec
Confidence 99999998753
No 149
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.30 E-value=3.9e-11 Score=96.12 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCeeeecCCceEecCCCeEEEEEEEEecCCC-eeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCC-CeE
Q psy2775 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKRE-EGV 86 (785)
Q Consensus 11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~ 86 (785)
+||.| ...+.+.+.+|++++|.|.+.+.|+| .|.|.+++..+..+ .++.+..........++|+|.++..+| .|.
T Consensus 1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 47777 77788999999999999999777775 67998888777543 566665543333345889999998877 899
Q ss_pred EEEEEEcCCeeEEEEeeE
Q psy2775 87 YTVVAKNREGEAKMDIPV 104 (785)
Q Consensus 87 Y~C~a~~~~~~~~~~~~v 104 (785)
|.|.|.|..|.+...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999998877665
No 150
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.30 E-value=1.1e-11 Score=95.22 Aligned_cols=70 Identities=24% Similarity=0.439 Sum_probs=59.9
Q ss_pred EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200 (785)
Q Consensus 131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 200 (785)
+.|.|.+.|.|.|.+.|++++..+.............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998876544444444568999999999999999999999999888888876
No 151
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.29 E-value=8.9e-12 Score=96.23 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=57.2
Q ss_pred CeeeecCCceEecCCCeEEEEEEEEecCC-CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPE-PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA 91 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 91 (785)
|.++..|+...+.+|++++|+|.+.+.|. ..+.|++++..+... + ..|+|.++ .+|+|.|+|.|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~--------~------~~l~i~~~-~~dsG~Y~C~a 65 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT--------T------NSYRIRAA-NNDSGEYRCQT 65 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc--------C------CeEEEeec-ccCCEEeEEEC
Confidence 67888999999999999999999988775 479999999877321 1 34899999 99999999999
Q ss_pred EcC
Q psy2775 92 KNR 94 (785)
Q Consensus 92 ~~~ 94 (785)
.+.
T Consensus 66 ~~~ 68 (78)
T cd05752 66 QGS 68 (78)
T ss_pred CCC
Confidence 875
No 152
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.29 E-value=1.4e-11 Score=95.75 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=55.3
Q ss_pred EEEEEEEec-CCCCceEEEeCCEEecCCCC----eeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775 576 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPK----KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646 (785)
Q Consensus 576 v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~----~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 646 (785)
+.|.|.+.+ .|.+.++|||+|+.+..... +.+........|.|.++.. +|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASL-ADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCc-ccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 68889999999998864321 2222334557899999999 9999999999999998887665
No 153
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.29 E-value=4.6e-11 Score=105.43 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=79.2
Q ss_pred EEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccc
Q psy2775 471 KLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT 549 (785)
Q Consensus 471 ~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 549 (785)
+|+|.+++..|+|.|+|.+.+. +.....+.|.|..+|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~----------------------------------------- 40 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR----------------------------------------- 40 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc-----------------------------------------
Confidence 6999999999999999999987 7788888999987632
Q ss_pred cCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CC-CceEEEeCCEEecC----CCCe----eEEeeCC----eEE
Q psy2775 550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLS----SPKK----REIFDGE----NII 615 (785)
Q Consensus 550 ~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~----~~~~----~~~~~~~----~~~ 615 (785)
+...+......+|+.++|.|.+.|+ |. +.|+|+++|..... .... .....++ .+.
T Consensus 41 -----------v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~ 109 (139)
T cd05771 41 -----------VRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSH 109 (139)
T ss_pred -----------eEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEE
Confidence 2111122234478999999999996 54 48999999864211 0111 1111122 245
Q ss_pred EEEccCCCCCCceeEEEEEEcCCc
Q psy2775 616 LELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 616 L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
|.+..-.. ++.+.|+|.+.+...
T Consensus 110 L~v~~~~~-~~g~~ytC~V~H~~l 132 (139)
T cd05771 110 LTLEPGTE-DAGATYTCRVSHVSL 132 (139)
T ss_pred EEecCCcc-CCCCEEEEEEEcCCC
Confidence 77765544 567789999998654
No 154
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.29 E-value=2.2e-11 Score=97.80 Aligned_cols=76 Identities=28% Similarity=0.436 Sum_probs=62.8
Q ss_pred cCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCC-CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 18 KTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQET-DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
.|..+.+.+|+++.|.|.+ .|.|.+.+.|++++..+... .++.+.. + +.|.|.+++.+|+|.|+|.|.|..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~------~~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-D------GNLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-C------CEEEEeECCcccCEEEEEEEEecc
Confidence 5778999999999999998 78899999999999988663 3333322 1 359999999999999999999998
Q ss_pred eeEEE
Q psy2775 96 GEAKM 100 (785)
Q Consensus 96 ~~~~~ 100 (785)
|....
T Consensus 75 G~~~s 79 (86)
T cd05724 75 GERES 79 (86)
T ss_pred Cceee
Confidence 87543
No 155
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.28 E-value=2.8e-06 Score=103.15 Aligned_cols=551 Identities=13% Similarity=0.143 Sum_probs=300.7
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE--EE
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV--AK 92 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~--a~ 92 (785)
|...+....+..+.++.|+-.........+.|.+++......... .+ +. +-...|.|... |.
T Consensus 1514 ~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~~np-------t~----~y-----TY~spGtYtVtLTvt 1577 (2740)
T TIGR00864 1514 LTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIFGGN-------TI----FY-----TFRSVGTFNIIVTAE 1577 (2740)
T ss_pred eEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCccccCCC-------ce----EE-----eecCCceEEEEEEEe
Confidence 444444555666778888855433345678998876422111110 00 01 12346888654 45
Q ss_pred cCCeeEEEEeeEEEeCCCCCCCceecC-----------CCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccc-eEE
Q psy2775 93 NREGEAKMDIPVKVNTGKPEKPSILEP-----------LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-QIT 160 (785)
Q Consensus 93 ~~~~~~~~~~~v~v~~~~~~~p~i~~~-----------~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~-~~~ 160 (785)
|..|....+..+.|.... .--.|... ....-+..|..+.|.-.+.......++|...+..-... ...
T Consensus 1578 N~~Gs~~~T~~i~V~~~I-~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~~ 1656 (2740)
T TIGR00864 1578 NDVGAAQASIFLFVLQEI-EGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAFA 1656 (2740)
T ss_pred cCCCccceeEEEEEeecc-cceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEEEEecCCCCCCcccc
Confidence 788877666666665210 00112111 01123445666777766544445578886521110001 011
Q ss_pred EeCCEEEEEEcccCCCCcEEEEE--EEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCee
Q psy2775 161 SEKNTHTLTLIQCSTKDKGRYSV--KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238 (785)
Q Consensus 161 ~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 238 (785)
..+....+. ..+.|.|.. .|.|..|....+..+.|.... ..+
T Consensus 1657 ~tGk~~~vt-----~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi-------------------------------~~L 1700 (2740)
T TIGR00864 1657 GSGKGAKLN-----PLEAGPCDIFLQAANLLGQATADCTIDFLEPA-------------------------------GNL 1700 (2740)
T ss_pred ccCceeEEe-----cCCCceEEEEEEEeecccceeeEEEEEEEEEc-------------------------------Cce
Confidence 122222332 356687765 567888888888777776422 122
Q ss_pred eecCCcceeCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEE--EEeCCCceEE
Q psy2775 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK--VTNKEGTVES 316 (785)
Q Consensus 239 ~~~~~~~~~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~n~~g~~~~ 316 (785)
........+..|+.++|.-...+-....++|..++..-. .......+. +....|.|... |.|..|....
T Consensus 1701 ~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~----~~s~p~~tH-----tf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864 1701 MLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDL----ETSEPFMSH-----SFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred EEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCc----ccCCCceEE-----EccCCceEEEEEEEEccccccce
Confidence 233334455678999999877777788999998653211 000000011 12345777665 4588887777
Q ss_pred EEEEEEeccccceeeeccc----eeEeeCccEEEEEEEc-CCCCeEEEEECCEEcCCCCcEEEEEcCcEEEEEEcCCCCC
Q psy2775 317 AANLNVDQGKAEFIKKLDD----LEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391 (785)
Q Consensus 317 ~~~l~v~~~~~~~~~~~~~----~~~~~g~~~~l~C~~~-~~~~~v~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~ 391 (785)
+..+.|.++-..+...... ..+..|..+.|.-.+. +.+..+.|..++..-..+.. .. .+..
T Consensus 1772 s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~-----------v~---~Tf~ 1837 (2740)
T TIGR00864 1772 SEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH-----------AC---MTFP 1837 (2740)
T ss_pred eEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce-----------eE---EecC
Confidence 7788887643333222111 1344567777766654 45668888876542111111 01 2345
Q ss_pred CceEEEEE--Eeccce----EEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCE-EcccCCCEEE
Q psy2775 392 DEGEYTCS--LPDQET----SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGK-EIAFSENVTL 463 (785)
Q Consensus 392 d~G~Y~C~--a~n~~~----~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~-~~~~~~~~~~ 463 (785)
+.|.|+-. |.|..+ +..+.|.+....+........+..|+.++|.+.+.. ....+.|..++. .........+
T Consensus 1838 ~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~ 1917 (2740)
T TIGR00864 1838 DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRF 1917 (2740)
T ss_pred CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeE
Confidence 68888665 456433 344555554444444445556778999999998876 466788987643 2211011010
Q ss_pred EEeCcEEEEEEccCCCCCcEEE--EEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEec-CCceee
Q psy2775 464 SIDGKKQKLIIFSAGLEDAGEY--SCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS-SPDIQV 539 (785)
Q Consensus 464 ~~~~~~~~L~i~~~~~~d~G~Y--~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 539 (785)
.. .....|.| +-.|.|. +.......+.|.++-..+..........+.+...+|...+. +.++.+
T Consensus 1918 ----------~H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f 1985 (2740)
T TIGR00864 1918 ----------SH--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAF 1985 (2740)
T ss_pred ----------Ee--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEE
Confidence 01 12234444 5556786 66777777777666333322222222357888899999886 688999
Q ss_pred EEeeccc-------------ccccCCCCCC---------------CCCeEeee--------ee--eeeeeecCeEEEEEE
Q psy2775 540 KWLNLFI-------------VPTCPLGSPG---------------QAPLFIER--------FE--EKTVKEKGTIRLMAK 581 (785)
Q Consensus 540 ~W~~~~~-------------~~~~~~~~~~---------------~~p~~~~~--------~~--~~~v~~g~~v~l~C~ 581 (785)
.|+...+ .+.......| ..+..+.- +. +.....+..++|+|.
T Consensus 1986 ~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~ 2065 (2740)
T TIGR00864 1986 AWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAA 2065 (2740)
T ss_pred EEEeeecccCCCcceeecCCceEEccCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEE
Confidence 9985522 1111111111 01111111 11 223455788999999
Q ss_pred EecCCC-CceEEEeC-CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE--EEcCCcceEEEEEEEEEeeccCCC
Q psy2775 582 VKASPA-PSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV--ATNELGSATHGARVTVDVEKVGRP 657 (785)
Q Consensus 582 ~~g~P~-p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~V~~~~~~~p 657 (785)
+...+. ..+.|-++ |......+..+. .+- - ...|.|.-. |.|........++|.|.+...-.|
T Consensus 2066 ~~~~~~~v~~~WDFGDGt~~~~T~~~~~--------sHt----Y-~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~C~~P 2132 (2740)
T TIGR00864 2066 TSPKPNFMACHWDFGDGSAGQDTDEPRA--------EHE----Y-LHPGDYRVQVNASNLVSFFSAHAEINVQVLACEEP 2132 (2740)
T ss_pred EccCCCcEEEEEEecCCCCccccCCcee--------EEE----e-cCCccEEEEEEEEcceeeeeeEEEEEEEEecCCCC
Confidence 876554 48999664 444332211111 111 1 355888765 568888888999999998888888
Q ss_pred CCccccccc
Q psy2775 658 PINSIDIDR 666 (785)
Q Consensus 658 ~~~~~~~~~ 666 (785)
.+......+
T Consensus 2133 ~V~i~~~~~ 2141 (2740)
T TIGR00864 2133 EVDVVLALQ 2141 (2740)
T ss_pred CcEeccCce
Confidence 776655544
No 156
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.28 E-value=1.4e-11 Score=93.81 Aligned_cols=69 Identities=26% Similarity=0.528 Sum_probs=58.1
Q ss_pred EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200 (785)
Q Consensus 131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 200 (785)
+.|.|.+.|.|.|.+.|+|++..+........ ...+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999887765543333 3447999999999999999999999999888887765
No 157
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.27 E-value=2.6e-11 Score=96.61 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=59.6
Q ss_pred CeEEEEEEEEecCCC--eeEEEECCEEccCCC---CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEe
Q psy2775 28 SEVTLEVRLVAVPEP--DLLWYYNGEPLQETD---EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102 (785)
Q Consensus 28 ~~v~l~C~~~g~p~~--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~ 102 (785)
++++|.|.+.|.|.+ .+.|++++..+.... .+...... ...+.|+|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 77 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK---DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc---cccceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence 578999999999877 679999999875432 11111110 1124699999999999999999999999999998
Q ss_pred eEEEe
Q psy2775 103 PVKVN 107 (785)
Q Consensus 103 ~v~v~ 107 (785)
.|.|.
T Consensus 78 ~l~V~ 82 (85)
T cd04970 78 DLIVR 82 (85)
T ss_pred EEEEE
Confidence 89887
No 158
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.27 E-value=1.1e-11 Score=97.32 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=51.0
Q ss_pred EEEEEEEecCCCCceEEEeCCEEec--------CCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce-EEEEE
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLL--------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGAR 646 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~--------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~ 646 (785)
++|.|.+.|+|.|.|.|+|++.... ...+... . ...+|.|.++.. +|+|.|+|.|.|..|.. ..++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-~--~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-L--SNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-e--cCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEEE
Confidence 5799999999999999999643211 1122211 1 235799999999 99999999999999986 44454
Q ss_pred EE
Q psy2775 647 VT 648 (785)
Q Consensus 647 l~ 648 (785)
|.
T Consensus 77 l~ 78 (79)
T cd05734 77 LT 78 (79)
T ss_pred Ee
Confidence 44
No 159
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.27 E-value=5.3e-11 Score=96.24 Aligned_cols=82 Identities=23% Similarity=0.426 Sum_probs=64.0
Q ss_pred CeeeecCCceEecCC---CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCC-CCCeEEE
Q psy2775 13 PTFSKKTKPVYAEEN---SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK-REEGVYT 88 (785)
Q Consensus 13 p~~~~~~~~~~v~~G---~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~ 88 (785)
|.|..+|..+.+.+| +++.|.|.+.|.|.+.|+|++++..+.......+.... ..|.|.++.. +|+|.|+
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~ 75 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG------GNLVISNPSKAKDAGRYQ 75 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC------CEEEEecCCccCCCEEEE
Confidence 789999999887654 57999999999999999999999988433222222211 2488988874 8999999
Q ss_pred EEEEcCCeeEEE
Q psy2775 89 VVAKNREGEAKM 100 (785)
Q Consensus 89 C~a~~~~~~~~~ 100 (785)
|.|.|..|...+
T Consensus 76 C~a~N~~G~~~S 87 (91)
T cd04967 76 CLASNIVGTVLS 87 (91)
T ss_pred EEEEcCCCEEEe
Confidence 999999997654
No 160
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.27 E-value=4.7e-11 Score=95.76 Aligned_cols=81 Identities=26% Similarity=0.485 Sum_probs=66.0
Q ss_pred eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646 (785)
Q Consensus 568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 646 (785)
..+..|+.++|.|.+.|+|.|.+.|+|++..+.......... ......|.|.++.. +|+|.|.|.|.|..|..+.++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCceEEEEEE
Confidence 356789999999999999999999999999886554332221 23456799999999 9999999999999999888777
Q ss_pred EEE
Q psy2775 647 VTV 649 (785)
Q Consensus 647 l~V 649 (785)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 754
No 161
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.27 E-value=3.7e-11 Score=97.20 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=62.8
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeC--------CEEecCCCCeeEEee-CCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRN--------NKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--------~~~i~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
+++.+.+|++++|.|.+.|.|.|.+.|++. +.....+.++..... ...++|+|.+++. +|+|.|+|.+.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLFT 83 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeEe
Confidence 478899999999999999999999999863 222333445544332 3567899999999 999999999998
Q ss_pred CCcceEEEEEEEE
Q psy2775 637 ELGSATHGARVTV 649 (785)
Q Consensus 637 ~~g~~~~~~~l~V 649 (785)
..+ ...++.|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 544 466666654
No 162
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.26 E-value=4.2e-11 Score=93.35 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=59.7
Q ss_pred CeEEEEEEEEe--cCCCeeEEEECCEEccC--CC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEe
Q psy2775 28 SEVTLEVRLVA--VPEPDLLWYYNGEPLQE--TD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102 (785)
Q Consensus 28 ~~v~l~C~~~g--~p~~~i~W~~~~~~~~~--~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~ 102 (785)
+++.|.|.+.+ .+++.|.|++||..|.. .. ++.... +. ...+.|+|.+++.+|+|.|+|.|.|..+....++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~-~~--~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a 77 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG-GQ--DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA 77 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec-cC--CCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence 57899999976 45789999999999962 22 222211 10 1113599999999999999999999999999999
Q ss_pred eEEEe
Q psy2775 103 PVKVN 107 (785)
Q Consensus 103 ~v~v~ 107 (785)
.|.|.
T Consensus 78 ~L~V~ 82 (85)
T cd05853 78 DLIVR 82 (85)
T ss_pred EEEEe
Confidence 99987
No 163
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.26 E-value=2.2e-11 Score=97.18 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=64.1
Q ss_pred eeeeeeeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 562 IERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 562 ~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
+..++...+.+|++++|.|.+.+ .|.|.+.|++++..+.... . .....|.|.++.. +|+|.|.|.|.|..|.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQL-SDAGTYVCTGSNMLDT 77 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCH-HHCEEEEEEEeccCCe
Confidence 34455778999999999999975 6888999999987654321 1 1235799999999 9999999999999999
Q ss_pred eEEEEEE
Q psy2775 641 ATHGARV 647 (785)
Q Consensus 641 ~~~~~~l 647 (785)
...++.|
T Consensus 78 ~~~~~~l 84 (85)
T cd05754 78 DEATATL 84 (85)
T ss_pred EeEEEEE
Confidence 9887775
No 164
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=3.2e-11 Score=93.52 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=55.8
Q ss_pred EEEEEEEEecCCCeeEEEECCEEcc-C--CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQ-E--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
++|.|.+.|.|.|.|+|++++.... . ..++.+...+ ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986422 2 2233332222 35999999999999999999999999888888876
No 165
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=3.4e-11 Score=93.19 Aligned_cols=73 Identities=29% Similarity=0.590 Sum_probs=59.6
Q ss_pred CCcEEEEEEEeccCCCeEEEeE-CCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775 128 GESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200 (785)
Q Consensus 128 G~~v~l~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 200 (785)
|+.+.|.|.+.|.|.|.+.|++ ++..+............+|.|.++..+|.|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999999999999997 677665443222223457999999999999999999999999888877765
No 166
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.26 E-value=3.8e-11 Score=94.88 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCe--eEE--eeCCeEEEEEccCCCCCCceeEEEEEEcCCc--ceEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK--REI--FDGENIILELKEADSETDAGDYKVVATNELG--SATHGAR 646 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~--~~~--~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g--~~~~~~~ 646 (785)
|++++|.|.+.|.|.|.+.|++.++........ ... .....++|+|.+++. +|+|.|+|.|+|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence 789999999999999999999877643221110 111 122357899999999 999999999999887 5555555
Q ss_pred EEE
Q psy2775 647 VTV 649 (785)
Q Consensus 647 l~V 649 (785)
|.|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 555
No 167
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.25 E-value=4.8e-11 Score=96.17 Aligned_cols=80 Identities=16% Similarity=0.310 Sum_probs=59.2
Q ss_pred CCeEEEEEEEEecCCCeeEEEEC----CEEccCCCC--EEEeecCCc---cceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYN----GEPLQETDE--VVFSDQSDM---HSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~----~~~~~~~~~--~~~~~~~~~---~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
|++++|.|.+.|.|.|.|+|+++ +..+..... ..+....+. ....++|+|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 344432222 111111110 112357999999999999999999999999
Q ss_pred EEEEeeEEE
Q psy2775 98 AKMDIPVKV 106 (785)
Q Consensus 98 ~~~~~~v~v 106 (785)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888776
No 168
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.24 E-value=2.7e-11 Score=91.22 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=53.2
Q ss_pred EEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEE
Q psy2775 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL 198 (785)
Q Consensus 131 v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 198 (785)
+.|.|.+.|.|+|++.|+|||.++............+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46899999999999999999999875422222223479999999999999999999987655544433
No 169
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.24 E-value=4.9e-11 Score=91.91 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=54.9
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccC--CCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE-EEEeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKV 106 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~~~~v~v 106 (785)
++|.|.+.|.|.|.|.|++++..+.. ..++... .+ ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~-----g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--RS-----GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--CC-----cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998863 3343332 11 249999999999999999999999874 45555554
No 170
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.24 E-value=6e-11 Score=94.30 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=60.1
Q ss_pred CCeEEEEEEEEec--CCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775 27 NSEVTLEVRLVAV--PEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP 103 (785)
Q Consensus 27 G~~v~l~C~~~g~--p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 103 (785)
|++++|.|.+.|. |.+.+.|++++..+....... ...........++|+|.+++.+|+|.|+|.|.|..+..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 8899999999999 789999998887553221110 0011111234578999999999999999999999998888877
Q ss_pred EEE
Q psy2775 104 VKV 106 (785)
Q Consensus 104 v~v 106 (785)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 766
No 171
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.24 E-value=1.4e-10 Score=91.61 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=57.5
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe--eEEEEeeE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG--EAKMDIPV 104 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~--~~~~~~~v 104 (785)
|++++|+|.+.|.|.+.+.|+++++....................++|+|.+++.+|+|.|.|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 8999999999999999999998876432211111111111122357899999999999999999998765 45566666
Q ss_pred EEe
Q psy2775 105 KVN 107 (785)
Q Consensus 105 ~v~ 107 (785)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 653
No 172
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.24 E-value=4.5e-11 Score=96.19 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=57.7
Q ss_pred CCeEEEEEEEEecCCCeeEEEECC----EEccCC-CCE-EEeec---CCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNG----EPLQET-DEV-VFSDQ---SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~----~~~~~~-~~~-~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
|++++|.|.+.|.|.|.|+|+|++ ..+... ... ..... ........+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999964 222211 111 11111 100111246999999999999999999999999
Q ss_pred EEEEeeEEE
Q psy2775 98 AKMDIPVKV 106 (785)
Q Consensus 98 ~~~~~~v~v 106 (785)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888876
No 173
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.23 E-value=7.5e-11 Score=92.25 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=56.3
Q ss_pred eeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 565 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
+++..+..|+++.|.|.+.+ |.|+|.|++||.++..+.....+.++ .|.|.+++. +|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~---~L~I~nv~~-~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD---GLLIFNASE-ADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC---cEEEeCCCH-HHCEEEEEEEEecc
Confidence 35778999999999999865 67899999999999766433333332 499999999 99999999999863
No 174
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.22 E-value=1.3e-10 Score=93.54 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=60.9
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEe--------cCCCCeeEEeeC-CeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIFDG-ENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i--------~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
+++.+.+|+++.|.|.+.|.|.|.|.|+|++..+ ..+.++.+.... ...+|.|.++.. +|+|.|+|.|..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEEe
Confidence 4788999999999999999999999999977543 223344333322 357899999999 999999999997
Q ss_pred CCcceEEEEEEE
Q psy2775 637 ELGSATHGARVT 648 (785)
Q Consensus 637 ~~g~~~~~~~l~ 648 (785)
. -...+.++|.
T Consensus 84 ~-~~~~~~~~~~ 94 (95)
T cd05882 84 M-PVRTAKATVT 94 (95)
T ss_pred e-ccccEEEEEE
Confidence 2 2344444444
No 175
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.22 E-value=4.2e-11 Score=96.49 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=63.6
Q ss_pred CceEecCCCeEEEEEEEEe-----cCCCeeEEEECCEEccCC--CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 20 KPVYAEENSEVTLEVRLVA-----VPEPDLLWYYNGEPLQET--DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 20 ~~~~v~~G~~v~l~C~~~g-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
....+.+|+.+.|.|.+.| .|.+.|.|||++..+... .+..+...+ ..|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~~~ 80 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK------DLLWFLPAALEDSGLYTCVVR 80 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC------CeEEEccCCcccCeEEEEEEc
Confidence 5778889999999999988 688999999998764321 122222222 359999999999999999999
Q ss_pred cCCeeEEEEeeEEE
Q psy2775 93 NREGEAKMDIPVKV 106 (785)
Q Consensus 93 ~~~~~~~~~~~v~v 106 (785)
|..|.....+.|.|
T Consensus 81 N~~g~~~~~~~L~v 94 (94)
T cd05756 81 NSTYCMKVSISLTV 94 (94)
T ss_pred CCCccEEEEEEEEC
Confidence 99999888776654
No 176
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.22 E-value=8.9e-11 Score=94.48 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEcc--------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ--------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV 90 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 90 (785)
..++.+.+|+++.|.|.+.+.|.+.|.|++++..+. ...++.+..... ...+|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP---TELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC---ceEEEEECCCCcccCEEEEEE
Confidence 357899999999999999999999999999875431 123333222221 235799999999999999999
Q ss_pred EEc
Q psy2775 91 AKN 93 (785)
Q Consensus 91 a~~ 93 (785)
+..
T Consensus 81 ~~t 83 (95)
T cd05882 81 IFT 83 (95)
T ss_pred EEe
Confidence 987
No 177
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.21 E-value=6.6e-11 Score=94.55 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=64.6
Q ss_pred eeeeeecCeEEEEEEEec-----CCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 567 EKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
.+.+.+|++++|.|...+ +|.|.+.||||+.++...... +. ....|.|.++.. +|+|.|+|.|.|.+|..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~-~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTE-EDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCCh-hhCEEEEEEEEecCCCE
Confidence 467889999999998654 357899999999998755432 22 445799999999 99999999999999988
Q ss_pred EEEEEEEEEe
Q psy2775 642 THGARVTVDV 651 (785)
Q Consensus 642 ~~~~~l~V~~ 651 (785)
.-+++..+.+
T Consensus 79 ~~~~t~t~~l 88 (92)
T cd05757 79 QYNVTRTISL 88 (92)
T ss_pred EEEEEEEEEE
Confidence 7777766653
No 178
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.19 E-value=1.4e-10 Score=90.30 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=60.1
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+.|.|.+.|.|.|.+.|++++..+....+..+....+. +.|.|.+++.+|.|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANG----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCC----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999999999999999998876544333322221 359999999999999999999999998888888774
No 179
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.16 E-value=1.5e-10 Score=90.00 Aligned_cols=70 Identities=20% Similarity=0.370 Sum_probs=55.6
Q ss_pred EEEEEEEEe-cCCCeeEEEECCEEccCCCCEE---EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775 30 VTLEVRLVA-VPEPDLLWYYNGEPLQETDEVV---FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP 103 (785)
Q Consensus 30 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 103 (785)
+.|.|.+.| .|.+.+.|++++..+....+.. +.... ..++|+|.+++.+|.|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKK----KNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecC----ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 8999999999999887654432 22111 2367999999999999999999999998776653
No 180
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.16 E-value=3.7e-10 Score=88.38 Aligned_cols=69 Identities=10% Similarity=0.241 Sum_probs=56.7
Q ss_pred cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC-CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD-EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
.|.++.+.+|+++.|.|.+.+ +.+.|.|++++.++.... ++.+ ..+ .|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~~-------~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YRD-------GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-ECC-------cEEEeCCCHHHCEEEEEEEEecc
Confidence 578899999999999999754 678999999999987663 3333 222 29999999999999999999764
No 181
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=2.3e-10 Score=90.53 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=55.7
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCE---Ec-cCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGE---PL-QETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM 100 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~---~~-~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~ 100 (785)
|++++|.|.+.|.|.|.+.|++++. .+ ...... .+... ..++|+|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT-----NIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc-----cccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 7899999999999999999999742 11 110000 01111 1246999999999999999999999999888
Q ss_pred EeeEEE
Q psy2775 101 DIPVKV 106 (785)
Q Consensus 101 ~~~v~v 106 (785)
.+.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 877654
No 182
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.15 E-value=5.1e-10 Score=88.55 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=69.1
Q ss_pred eeeeeecCeEEEEEEEecCCCCc-eEEEeCCEEecCCCCeeEEeeC-----CeEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~i~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
.+.|.+|+.+.|.|.++++|+|+ +.|.+++..+............ -.+.|.+.++.. +|+|.|+|.|.|+.+.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCCe
Confidence 56899999999999999999997 9999998877554442222221 347899999999 9999999999999999
Q ss_pred eEEEEEEEEE
Q psy2775 641 ATHGARVTVD 650 (785)
Q Consensus 641 ~~~~~~l~V~ 650 (785)
...++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9988888875
No 183
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.14 E-value=4e-10 Score=91.19 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=55.8
Q ss_pred cCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--------EccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--------PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 89 (785)
.+.++.+.+|++++|.|.+.+.|.+.+.|++.+. ......++...... . ...+|+|.+++.+|+|.|.|
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~-~--~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS-W--HELSISISDVSLSDEGQYTC 79 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC-C--CcEEEEECcCCcccCEEEEE
Confidence 3568999999999999999999999999986332 22233444432221 1 12569999999999999999
Q ss_pred EEEcCC
Q psy2775 90 VAKNRE 95 (785)
Q Consensus 90 ~a~~~~ 95 (785)
.+.+..
T Consensus 80 ~~~t~~ 85 (95)
T cd07701 80 SLFTMP 85 (95)
T ss_pred EeEeec
Confidence 999743
No 184
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.14 E-value=2.3e-10 Score=91.21 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=64.4
Q ss_pred eeecCCceEecCCCeEEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~ 93 (785)
....|+.+.+.+|++++|.|.+.+ .|.+.+.|++++..+.... .. ..+.|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~~------~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 4 TVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----MD------FNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred EecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----cc------cCCEEEECCCCHHHCEEEEEEEec
Confidence 456788999999999999999964 6888999999987653321 11 114599999999999999999999
Q ss_pred CCeeEEEEeeE
Q psy2775 94 REGEAKMDIPV 104 (785)
Q Consensus 94 ~~~~~~~~~~v 104 (785)
..|.....+.|
T Consensus 74 ~~g~~~~~~~l 84 (85)
T cd05754 74 MLDTDEATATL 84 (85)
T ss_pred cCCeEeEEEEE
Confidence 99988877654
No 185
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.14 E-value=2.1e-10 Score=92.38 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=60.1
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCC--CeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC-cceE
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVATNEL-GSAT 642 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~-g~~~ 642 (785)
..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+.... ....... ...|.|.++.. +|+|.|.|.|.|.. +...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~-~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSP-ADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCH-HHCEEEEEEEecCccceeE
Confidence 3567899999999999987 888999999998776542 1112221 22499999999 99999999999765 4445
Q ss_pred EEEEEEEE
Q psy2775 643 HGARVTVD 650 (785)
Q Consensus 643 ~~~~l~V~ 650 (785)
.+.+|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 55555553
No 186
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.12 E-value=1.1e-10 Score=92.48 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=57.9
Q ss_pred eeeeeeecCeEEEEEEE-ecCCCCceEEEeCCEEe--cCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 566 EEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPL--LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~i--~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
+...+.+|+.+.|.|.. .|+|.|.|.|++++.++ ..+.+. +.....+.|.|.+++. +|+|.|+|.|+|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~-~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEA-SDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCH-hhCceeEEEEEecccCC
Confidence 46689999999999975 68899999999998764 223332 2333456799999999 99999999999987644
No 187
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.11 E-value=9.8e-10 Score=88.05 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=65.1
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM 100 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~ 100 (785)
.+.+.+|+++.|.|.+.+.|.+.+.|++++..+............ .....|.|.+++.+|.|.|.|.+.|..|....
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVR---KKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEcc---CcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 467789999999999999999999999999887654433322111 12246999999999999999999999998777
Q ss_pred EeeEEE
Q psy2775 101 DIPVKV 106 (785)
Q Consensus 101 ~~~v~v 106 (785)
++.|+|
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 776653
No 188
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.09 E-value=6.7e-10 Score=89.40 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=62.7
Q ss_pred cCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
+|..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.... ...+.... ..|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~~ 74 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE------DGLLIRSVSPADAGVYTCQSVEHG 74 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC------CCEEEccCCHHHCEEEEEEEecCc
Confidence 467889999999999999876 788999999998765542 11222211 238999999999999999998654
Q ss_pred -eeEEEEeeEEEe
Q psy2775 96 -GEAKMDIPVKVN 107 (785)
Q Consensus 96 -~~~~~~~~v~v~ 107 (785)
+....++.|.|.
T Consensus 75 ~~~~~~~~~l~V~ 87 (89)
T cd04979 75 FKQTLATYSLNVL 87 (89)
T ss_pred cceeEeEEEEEEe
Confidence 445566777764
No 189
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.08 E-value=4.1e-10 Score=87.45 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=49.9
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCC----CCCeEEEEEEEcCCeeEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKK----REEGVYTVVAKNREGEAKM 100 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~~~~~~~~~ 100 (785)
++|.|.+.|.|.|.|+|++++..+.... ++.+.... ++|.|.+++. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~------g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDS------GTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCC------CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 5799999999999999999999875432 33322221 3588888754 7999999999999997654
No 190
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.08 E-value=3.8e-10 Score=87.71 Aligned_cols=70 Identities=16% Similarity=0.367 Sum_probs=52.7
Q ss_pred EEEEEEEEe-cCCCeeEEEECCEEccCCC----CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEEee
Q psy2775 30 VTLEVRLVA-VPEPDLLWYYNGEPLQETD----EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIP 103 (785)
Q Consensus 30 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 103 (785)
+.|.|.+.+ .|.+.+.|++++..+.... ++.+... ...+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK----KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999864 5778999999998885432 1222221 12356999999999999999999999998776653
No 191
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.08 E-value=7.1e-10 Score=85.85 Aligned_cols=66 Identities=23% Similarity=0.455 Sum_probs=48.8
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCC----CCCeEEEEEEEcCCeeEEEE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKK----REEGVYTVVAKNREGEAKMD 101 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~----~D~G~Y~C~a~~~~~~~~~~ 101 (785)
+.|.|.+.|.|.|.|+|++++..+.... ++.+...+ ++|.|..+.. .|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT------GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCC------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 5799999999999999999999874332 23222222 3477777654 47899999999999976553
No 192
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.07 E-value=8.2e-10 Score=85.47 Aligned_cols=65 Identities=22% Similarity=0.456 Sum_probs=50.0
Q ss_pred EEEEEEEeccCCCeEEEeECCEEccc---ceEEEeCCEEEEEEcccC----CCCcEEEEEEEEcCCeeEEEE
Q psy2775 131 AVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCS----TKDKGRYSVKVTNKEGTVESA 195 (785)
Q Consensus 131 v~l~C~~~g~p~~~v~W~~~g~~~~~---~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 195 (785)
+.|.|.+.|+|.|.|+|+|+|..+.. ..+.......+|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999987632 223333345678888764 257999999999999976554
No 193
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.07 E-value=5.4e-10 Score=89.17 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=56.2
Q ss_pred eeeeecCeEEEEEEEecCCCCceEEEeCCEEe-c-------------CCCCeeEEe---eCCeEEEEEccCCCCCCceeE
Q psy2775 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-L-------------SSPKKREIF---DGENIILELKEADSETDAGDY 630 (785)
Q Consensus 568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i-~-------------~~~~~~~~~---~~~~~~L~i~~~~~~~d~G~Y 630 (785)
+.+.+|++|+|.|.+.+.|.+.+.|++++... . ...+..... ..+.+.|+|.++.. +|+|+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEE
Confidence 35789999999999999999999999876332 1 112222222 44567899999999 999999
Q ss_pred EEEEEcCCcce
Q psy2775 631 KVVATNELGSA 641 (785)
Q Consensus 631 ~C~a~n~~g~~ 641 (785)
.|.+.|..++.
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999988754
No 194
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.06 E-value=4.8e-10 Score=88.17 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=54.8
Q ss_pred eeeeeecCeEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceE
Q psy2775 567 EKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~ 642 (785)
...+.+|++++|.|.+.+ .|.+.+.|||+|..+... .....|.|.+++. +|+|.|+|.|.|..|...
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATL-SDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCH-HHCEEEEEEEEeCCceec
Confidence 447899999999999864 567789999999876421 2345799999999 999999999999998543
No 195
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.05 E-value=3.1e-09 Score=84.18 Aligned_cols=89 Identities=25% Similarity=0.468 Sum_probs=72.9
Q ss_pred CCceEecCCCeEEEEEEEEecCCCe-eEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~-i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
-..+.|.+|+++.|.|.+.+.|+|. +.|.+++..+.......+.... ...++.+.|++..++.+|+|.|+|.|.|...
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 3568999999999999999999997 9999998876554442232222 3355889999999999999999999999999
Q ss_pred eEEEEeeEEEe
Q psy2775 97 EAKMDIPVKVN 107 (785)
Q Consensus 97 ~~~~~~~v~v~ 107 (785)
..+..+.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 88888888764
No 196
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.04 E-value=9.8e-10 Score=87.10 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=58.7
Q ss_pred cCeEEEEEEEecCCCC--ceEEEeCCEEecCC---CCeeE-E--eeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775 573 KGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKRE-I--FDGENIILELKEADSETDAGDYKVVATNELGSATHG 644 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p--~v~W~~~~~~i~~~---~~~~~-~--~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 644 (785)
|++++|.|.+.|.|.+ .+.|.+.+...... ..... . .....++|.|.+++. +|+|.|+|.|+|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecceEeccc
Confidence 7899999999987655 78998877643211 10000 1 123457899999999 99999999999999999999
Q ss_pred EEEEEE
Q psy2775 645 ARVTVD 650 (785)
Q Consensus 645 ~~l~V~ 650 (785)
+.|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 998886
No 197
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.04 E-value=7.8e-10 Score=82.70 Aligned_cols=63 Identities=29% Similarity=0.595 Sum_probs=52.4
Q ss_pred ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
+|++++|.|.+.+.|.+.+.|++++..+. . . .........|.|.++.. +|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~--~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-S--NRLSASGSTLTIKSVSL-EDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-C-C--CEEecCCcEEEEeeCCc-ccCEEEEEEEecCCC
Confidence 48899999999999999999999998886 1 1 12233455799999999 999999999999875
No 198
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.03 E-value=9.4e-10 Score=86.20 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=49.5
Q ss_pred EEEEEEEEecCCCeeEEEECCEEcc--------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE-EE
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQ--------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA-KM 100 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~-~~ 100 (785)
|+|.|.+.|.|.|.+.|++++.... ...++.... ..+|.|.+++.+|+|.|+|.|.|..|.+ +.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~ 73 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-------NGSLLIKHVLEEDSGYYLCKVSNDVGADASK 73 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec-------CCeEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence 5799999999999999999753221 122222211 1459999999999999999999999876 33
Q ss_pred EeeE
Q psy2775 101 DIPV 104 (785)
Q Consensus 101 ~~~v 104 (785)
.+.|
T Consensus 74 ~~~l 77 (79)
T cd05734 74 SMVL 77 (79)
T ss_pred EEEE
Confidence 4444
No 199
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.02 E-value=2.1e-09 Score=87.69 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=60.1
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEe--------cCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i--------~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
++..+.+|++++|.|.+.+.|.+.+.|++.+..+ ..+.++.... .+..+.|+|.+++. +|+|.|+|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEec
Confidence 4678999999999999999999999998632211 1223444422 23457899999999 999999999998
Q ss_pred CCcceEEEEEEEE
Q psy2775 637 ELGSATHGARVTV 649 (785)
Q Consensus 637 ~~g~~~~~~~l~V 649 (785)
... .+.++.|.|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 753 455566554
No 200
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.01 E-value=5.1e-09 Score=84.02 Aligned_cols=82 Identities=33% Similarity=0.515 Sum_probs=69.2
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeC-CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
...+..|++++|.|.+.+.+.+.+.|+++ +..+....+...........|.|.++.. +|+|.|.|.+.+..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence 45678999999999999998889999998 8888755566555555567899999999 999999999999998887776
Q ss_pred EEEE
Q psy2775 646 RVTV 649 (785)
Q Consensus 646 ~l~V 649 (785)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6665
No 201
>smart00409 IG Immunoglobulin.
Probab=99.01 E-value=5.1e-09 Score=84.02 Aligned_cols=82 Identities=33% Similarity=0.515 Sum_probs=69.2
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeC-CEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
...+..|++++|.|.+.+.+.+.+.|+++ +..+....+...........|.|.++.. +|+|.|.|.+.+..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence 45678999999999999998889999998 8888755566555555567899999999 999999999999998887776
Q ss_pred EEEE
Q psy2775 646 RVTV 649 (785)
Q Consensus 646 ~l~V 649 (785)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6665
No 202
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.01 E-value=1.7e-09 Score=85.56 Aligned_cols=70 Identities=29% Similarity=0.597 Sum_probs=55.4
Q ss_pred eeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc-ceEEEEE
Q psy2775 568 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG-SATHGAR 646 (785)
Q Consensus 568 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g-~~~~~~~ 646 (785)
..+.+|+.++|.|.+.|.|.+.+.|++++..+..+.. . |.+.++.. +|+|.|+|.|.|..| ....+++
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------~--~~~~~~~~-~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------G--LFIPNVSP-EDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------E--EEESSEEG-GGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------e--eeeeeecc-ccCEEEEEEEEeCCCCeEeeeEE
Confidence 6789999999999999999999999999988763322 1 77788888 999999999999765 2333444
Q ss_pred EE
Q psy2775 647 VT 648 (785)
Q Consensus 647 l~ 648 (785)
|.
T Consensus 78 v~ 79 (80)
T PF13895_consen 78 VT 79 (80)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 203
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.01 E-value=6.9e-10 Score=87.86 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=58.0
Q ss_pred eeeeeeeecCeEEEEEE-EecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCce-eEEEEEEcCCcc
Q psy2775 565 FEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG-DYKVVATNELGS 640 (785)
Q Consensus 565 ~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~a~n~~g~ 640 (785)
++.+.|.+|+++.|.|. ..|+|.|.|.|++++......++ ++ .-+..+.|.|.+++. +|+| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~-Ri-~~~~~GnL~fs~v~~-~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDE-RV-SMGQNGNLYFANVEE-QDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccc-cE-EECCCceEEEEEEeh-hhCCCCeEEEEEccccc
Confidence 46789999999999997 69999999999988765433322 22 223346799999999 9999 799999998643
No 204
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.00 E-value=1.7e-09 Score=86.02 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=57.0
Q ss_pred eeeeeecCeEEEEEE-EecC----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 567 EKTVKEKGTIRLMAK-VKAS----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~-~~g~----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
.+.+.+|....|.|. .+++ +.|.|+||||++++..+......+.+ ...|.|.++.. +|+|.|+|.|.|.+|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v~~-~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDVSL-NDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEcCh-hhCEEEEEEEEEeeCCE
Confidence 456788999999996 3444 66799999999998765543333233 34599999999 99999999999998765
No 205
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.99 E-value=3.2e-09 Score=84.16 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=57.8
Q ss_pred CCeEEEEEEEEecC--CCeeEEEECCEEccCC---CCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEE
Q psy2775 27 NSEVTLEVRLVAVP--EPDLLWYYNGEPLQET---DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD 101 (785)
Q Consensus 27 G~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~ 101 (785)
|++++|.|.+.+.+ ...+.|.+++...... ....... .......++|+|.+++.+|+|.|+|.|.|..+.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 88999999998765 4578999887643211 1100000 1112345789999999999999999999999888888
Q ss_pred eeEEEe
Q psy2775 102 IPVKVN 107 (785)
Q Consensus 102 ~~v~v~ 107 (785)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888775
No 206
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.98 E-value=2.7e-09 Score=85.42 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=57.1
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeCCE--Ee----cCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE-cCCc
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PL----LSSPKKREIFDGENIILELKEADSETDAGDYKVVAT-NELG 639 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~i----~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~-n~~g 639 (785)
.+.+.+|++++|.|.. +.|.|.+.|||.+. .. ..+.+. ... ...|.|.++.. +|+|.|+|.|. |..|
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~--~~~--~~~L~I~~~~~-~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERL--IHT--ERGLLLRSLQR-SDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccE--EEe--cCeEEEeeCCh-hHCEEEEEEEEccCCe
Confidence 4568899999999996 58999999998432 21 112222 122 23499999999 99999999998 6777
Q ss_pred ceEEEEEEEEE
Q psy2775 640 SATHGARVTVD 650 (785)
Q Consensus 640 ~~~~~~~l~V~ 650 (785)
.....++|.|.
T Consensus 79 ~~~~~~~l~v~ 89 (91)
T cd05871 79 QTLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEEe
Confidence 77777777764
No 207
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.96 E-value=1.6e-09 Score=85.97 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=56.9
Q ss_pred cCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEc--cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC
Q psy2775 18 KTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPL--QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~ 94 (785)
..+.+.+.+|+.+.|.|.. .|.|.+.|.|++++.++ ....+..+...+ +.|.|.+++.+|+|.|+|.|.|.
T Consensus 9 ~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~------G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 9 ERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTN------GNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCC------CcEEEeecCHhhCceeEEEEEec
Confidence 3456889999999999987 67799999999998754 223333333222 24999999999999999999997
Q ss_pred Cee
Q psy2775 95 EGE 97 (785)
Q Consensus 95 ~~~ 97 (785)
...
T Consensus 83 ~~~ 85 (96)
T cd05727 83 SST 85 (96)
T ss_pred ccC
Confidence 643
No 208
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.95 E-value=3.7e-09 Score=84.36 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=54.3
Q ss_pred eEecCCCeEEEEEEEEecCCCeeEEEECCEEc-cC-------------CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL-QE-------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 22 ~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
+.+.+|++|+|+|.+++.+.+.+.|++++... .. .+++..... ........|+|.+++.+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEE
Confidence 57889999999999998888999999876332 11 111111110 1112335699999999999999
Q ss_pred EEEEEcCCeeE
Q psy2775 88 TVVAKNREGEA 98 (785)
Q Consensus 88 ~C~a~~~~~~~ 98 (785)
.|.+.|..+..
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999876543
No 209
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=5.7e-09 Score=82.45 Aligned_cols=78 Identities=29% Similarity=0.550 Sum_probs=59.9
Q ss_pred CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
|.+..++ ..+.+|++++|.|.+.+.|.+.+.|++++..+..+... |.|.+++.+|.|.|+|.+.
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~--------------~~~~~~~~~~~g~y~C~~~ 65 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG--------------LFIPNVSPEDSGNYTCRAS 65 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE--------------EEESSEEGGGTEEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee--------------eeeeeeccccCEEEEEEEE
Confidence 6677665 66899999999999999888999999998777632211 6678899999999999999
Q ss_pred cCCe-eEEEEeeEEE
Q psy2775 93 NREG-EAKMDIPVKV 106 (785)
Q Consensus 93 ~~~~-~~~~~~~v~v 106 (785)
+..+ ..+..+.|.|
T Consensus 66 ~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 66 NGSGSNTSTSVNVTV 80 (80)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred eCCCCeEeeeEEeeC
Confidence 8665 3444455543
No 210
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.94 E-value=2.2e-08 Score=80.28 Aligned_cols=84 Identities=29% Similarity=0.493 Sum_probs=68.1
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEEEC-CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYN-GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
|..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++....... ...|.|.+++.+|+|.|.|.+.+..+.
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4567889999999999998887889999998 88777566666555443 356999999999999999999988877
Q ss_pred EEEEeeEEE
Q psy2775 98 AKMDIPVKV 106 (785)
Q Consensus 98 ~~~~~~v~v 106 (785)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 666666654
No 211
>smart00409 IG Immunoglobulin.
Probab=98.94 E-value=2.2e-08 Score=80.28 Aligned_cols=84 Identities=29% Similarity=0.493 Sum_probs=68.1
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEEEC-CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYN-GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
|..+.+.+|++++|.|.+.+.+.+.+.|+++ +..+....++....... ...|.|.+++.+|+|.|.|.+.+..+.
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4567889999999999998887889999998 88777566666555443 356999999999999999999988877
Q ss_pred EEEEeeEEE
Q psy2775 98 AKMDIPVKV 106 (785)
Q Consensus 98 ~~~~~~v~v 106 (785)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 666666654
No 212
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.94 E-value=3.6e-09 Score=84.58 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=60.7
Q ss_pred ceEeccCCcEEEEEEEec-----cCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEE
Q psy2775 122 DVSITEGESAVLSVQVGG-----EPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA 196 (785)
Q Consensus 122 ~~~~~~G~~v~l~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 196 (785)
.+.+.+|....|.|...+ +|.+.+.||||+.++........ ....|.|.++..+|+|.|+|.|.|..+.....+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~ 82 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV 82 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence 346778999999998643 25779999999999876543332 445899999999999999999999887766655
Q ss_pred EEEe
Q psy2775 197 NLNV 200 (785)
Q Consensus 197 ~l~V 200 (785)
+..+
T Consensus 83 t~t~ 86 (92)
T cd05757 83 TRTI 86 (92)
T ss_pred EEEE
Confidence 4444
No 213
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.93 E-value=3.4e-09 Score=83.35 Aligned_cols=67 Identities=27% Similarity=0.334 Sum_probs=54.0
Q ss_pred ceEeccCCcEEEEEEEec-cCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEE
Q psy2775 122 DVSITEGESAVLSVQVGG-EPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE 193 (785)
Q Consensus 122 ~~~~~~G~~v~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 193 (785)
...+.+|++++|+|.+.+ .+...+.|+|+|..+.. ......|.|.+++.+|+|.|+|.+.+..+...
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 346889999999999854 55668999999987642 22345799999999999999999999887543
No 214
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.93 E-value=1.9e-09 Score=85.41 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=60.7
Q ss_pred CCeeeec-CCceEecCCCeEEEEEE-EEecCCCeeEEEECCEE-ccCCCCEEEeecCCccceEEEEEEcccCCCCCe-EE
Q psy2775 12 PPTFSKK-TKPVYAEENSEVTLEVR-LVAVPEPDLLWYYNGEP-LQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-VY 87 (785)
Q Consensus 12 ~p~~~~~-~~~~~v~~G~~v~l~C~-~~g~p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y 87 (785)
.|+|... .+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +....|+.+..+ +.|.|.+++.+|+| .|
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-------GnL~fs~v~~~D~g~~Y 74 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN-------GNLYFANVEEQDSHPDY 74 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC-------ceEEEEEEehhhCCCCe
Confidence 4667655 57899999999999998 58999999999987654 333344433322 34999999999999 89
Q ss_pred EEEEEcCCe
Q psy2775 88 TVVAKNREG 96 (785)
Q Consensus 88 ~C~a~~~~~ 96 (785)
.|.|.|...
T Consensus 75 ~C~a~~~~~ 83 (95)
T cd05845 75 ICHAHFPGL 83 (95)
T ss_pred EEEEEcccc
Confidence 999998763
No 215
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.92 E-value=1.2e-08 Score=83.16 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=57.2
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEc--------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL--------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV 90 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 90 (785)
++.+.+.+|++++|.|.+.+.+.+.+.|++.+..+ ....++......+ ....|+|.+++.+|+|.|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA---NELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC---CeeEEEEccCCcccCEEEEEE
Confidence 56789999999999999988888899998633211 1123443322111 124699999999999999999
Q ss_pred EEcCCeeEEEEeeEE
Q psy2775 91 AKNREGEAKMDIPVK 105 (785)
Q Consensus 91 a~~~~~~~~~~~~v~ 105 (785)
+.+... ....+.|.
T Consensus 81 ~~~~~~-~~~~~~~~ 94 (95)
T cd05717 81 LYTMPV-QTAKATVT 94 (95)
T ss_pred EecCCC-ceEEEEEE
Confidence 997643 23444443
No 216
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.92 E-value=9.5e-09 Score=82.22 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=56.7
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ec----cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE-
Q psy2775 20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PL----QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK- 92 (785)
Q Consensus 20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~- 92 (785)
..+.+.+|+++.|.|.. +.|.+.+.||+++. .. ....+.... ...|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--------~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--------ERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--------cCeEEEeeCChhHCEEEEEEEEc
Confidence 45778999999999996 57889999998432 11 112222221 1349999999999999999998
Q ss_pred cCCeeEEEEeeEEEe
Q psy2775 93 NREGEAKMDIPVKVN 107 (785)
Q Consensus 93 ~~~~~~~~~~~v~v~ 107 (785)
+..+.....+.|.|.
T Consensus 75 ~~~~~~~~~~~l~v~ 89 (91)
T cd05871 75 HSFSQTLAKYTLHVI 89 (91)
T ss_pred cCCeEEEEEEEEEEe
Confidence 455556666667664
No 217
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.91 E-value=7.2e-09 Score=81.86 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=53.0
Q ss_pred eEEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEee-CC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEE
Q psy2775 575 TIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD-GE----NIILELKEADSETDAGDYKVVATNELGSATHGARVT 648 (785)
Q Consensus 575 ~v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~-~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 648 (785)
+++|.|.+.| +|.+.|+|+|+|+++........... +. .+.|.|..... +|.|.|+|.|.|..........+.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH-DTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee-cCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999987 59899999999998865432222222 22 24688887766 788999999999886655555554
Q ss_pred E
Q psy2775 649 V 649 (785)
Q Consensus 649 V 649 (785)
+
T Consensus 80 l 80 (82)
T cd05759 80 L 80 (82)
T ss_pred E
Confidence 4
No 218
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.89 E-value=6.5e-09 Score=79.32 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=48.8
Q ss_pred eEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeEEeeC----CeEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 575 TIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 575 ~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
.++|+|.+. |+|++.|+||||+++|..... ....+ ..++|.|..... +|.+.|+|+|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhCC
Confidence 378999985 569999999999999965321 11122 234689988887 99999999999998764
No 219
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.86 E-value=3.3e-08 Score=78.84 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=56.6
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEEe--------cCCCCeeEEe-eCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i--------~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
+++++.+|++++|+|.+.+.....+.|++-+..+ ..++|+.... ++...+|+|.+++. +|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEEc
Confidence 4778999999999999999877778888765432 3455665554 46778999999999 999999999975
No 220
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.85 E-value=1.2e-08 Score=76.25 Aligned_cols=63 Identities=33% Similarity=0.620 Sum_probs=52.1
Q ss_pred cCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190 (785)
Q Consensus 127 ~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 190 (785)
+|+.+.|.|.+.+.+.+.+.|++++..+.. ..........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC-CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 488999999988888899999999988773 223334456899999999999999999988754
No 221
>PHA03376 BARF1; Provisional
Probab=98.85 E-value=7.5e-08 Score=83.32 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=53.8
Q ss_pred eeeeeecCeEEEEEEEec---CCCCceEEEeCC----EEe-------------cCCCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775 567 EKTVKEKGTIRLMAKVKA---SPAPSIVWFRNN----KPL-------------LSSPKKREIFDGENIILELKEADSETD 626 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g---~P~p~v~W~~~~----~~i-------------~~~~~~~~~~~~~~~~L~i~~~~~~~d 626 (785)
.+.+..|+.+.|.|...- .+...|.|+|.+ ..+ ....++.++.+.++.+|.|.+++. +|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l-SD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee-cC
Confidence 557789999999998652 245589999942 211 111223444557889999999999 99
Q ss_pred ceeEEEEEEcCCcceEE
Q psy2775 627 AGDYKVVATNELGSATH 643 (785)
Q Consensus 627 ~G~Y~C~a~n~~g~~~~ 643 (785)
.|.|+|...-......+
T Consensus 99 dGtY~C~fQkge~~~~k 115 (221)
T PHA03376 99 DGNYLCRMKLGETEVTK 115 (221)
T ss_pred CceEEEEEEcCCCceee
Confidence 99999999875544433
No 222
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.83 E-value=8.7e-09 Score=77.07 Aligned_cols=63 Identities=30% Similarity=0.422 Sum_probs=48.1
Q ss_pred CCeEEEEEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775 27 NSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA 91 (785)
Q Consensus 27 G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 91 (785)
|++++|.|.+ .+.+...+.|++++..+............... ...|+|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSS--TSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEE--EEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeeccccee--eeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 77788899999999766554443333333221 124999999999999999987
No 223
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.82 E-value=2.3e-08 Score=76.38 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=51.5
Q ss_pred EEEEEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 30 VTLEVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 30 v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
++|+|.. .|+|++.|.||+++.+|..... ....+...+..++|+|.....+|++.|+|+|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~--~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS--QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc--cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 7899998 5669999999999999965321 1123333345578999999999999999999998764
No 224
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.82 E-value=7.4e-09 Score=77.45 Aligned_cols=61 Identities=18% Similarity=0.405 Sum_probs=46.0
Q ss_pred cCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEeeCCeE--EEEEccCCCCCCceeEEEEE
Q psy2775 573 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENI--ILELKEADSETDAGDYKVVA 634 (785)
Q Consensus 573 g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a 634 (785)
|++++|.|.+ .+.|.+.+.|+|++..............+... +|.|.+++. +|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence 7899999999 77778899999998766443322222222211 399999999 9999999987
No 225
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.81 E-value=2.8e-08 Score=77.12 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=60.4
Q ss_pred CCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcC-Cee
Q psy2775 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNR-EGE 97 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~-~~~ 97 (785)
...+.|.+|+++.|.|...+ +...+.|++++..+....++.....+ |.|.+++.+|+|.|.|.+... ...
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G--------LlI~~~~~~dsG~Y~C~s~E~gf~~ 73 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG--------LLILVTSPEHSGTYRCYSEEEGFQQ 73 (85)
T ss_pred ceEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC--------CEEEECCHhhCEEEEEEEecCCCeE
Confidence 35789999999999999865 46689999999998766665554444 889999999999999999833 223
Q ss_pred EEEEeeEEE
Q psy2775 98 AKMDIPVKV 106 (785)
Q Consensus 98 ~~~~~~v~v 106 (785)
....+.|.|
T Consensus 74 ~~~~y~l~v 82 (85)
T cd05872 74 LVASYSLNV 82 (85)
T ss_pred EEEEEEEEE
Confidence 344455554
No 226
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.78 E-value=3.4e-08 Score=76.66 Aligned_cols=78 Identities=19% Similarity=0.353 Sum_probs=65.4
Q ss_pred CCeEEecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEEE
Q psy2775 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLT 502 (785)
Q Consensus 423 ~~~~v~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~ 502 (785)
....+..|+.+.|.|...+..+.+.|++++..+....++....+| |.|..++..|+|.|.|.+...|-...-+.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~ 79 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEEEGFQQLVASYS 79 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence 456788999999999999998899999999998777777766666 8899999999999999998766666555555
Q ss_pred EE
Q psy2775 503 VE 504 (785)
Q Consensus 503 V~ 504 (785)
+.
T Consensus 80 l~ 81 (85)
T cd05872 80 LN 81 (85)
T ss_pred EE
Confidence 54
No 227
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.77 E-value=4.9e-08 Score=77.61 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=59.0
Q ss_pred eeeeeeecCeEEEEEEEe------cC-----CCCceEEEeCCEEecCCCC-----eeEEeeCCeEEEEEccCCCCCCcee
Q psy2775 566 EEKTVKEKGTIRLMAKVK------AS-----PAPSIVWFRNNKPLLSSPK-----KREIFDGENIILELKEADSETDAGD 629 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~------g~-----P~p~v~W~~~~~~i~~~~~-----~~~~~~~~~~~L~i~~~~~~~d~G~ 629 (785)
+...+.+||++.|.|... ++ +...+.|+|++..+..... .++...+ ..|.|.++.. +|+|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~-eDSG~ 84 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAEL-QDSGL 84 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCCh-hhCeE
Confidence 356789999999999861 11 2337999999765544331 1233333 3499999999 99999
Q ss_pred EEEEEEcCCcceEEEEEEEE
Q psy2775 630 YKVVATNELGSATHGARVTV 649 (785)
Q Consensus 630 Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+|++.|.......++.|.|
T Consensus 85 Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 85 YTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEECCCCcceEEEEEEEC
Confidence 99999999888777776654
No 228
>PHA03376 BARF1; Provisional
Probab=98.74 E-value=9e-08 Score=82.82 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=74.6
Q ss_pred ceEecCCCeEEEEEEEEe---cCCCeeEEEECC----EEc-------------cCCCCEEEeecCCccceEEEEEEcccC
Q psy2775 21 PVYAEENSEVTLEVRLVA---VPEPDLLWYYNG----EPL-------------QETDEVVFSDQSDMHSYVSIVTIKSIK 80 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g---~p~~~i~W~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~L~i~~~~ 80 (785)
.+.+..|+++.|+|.-.. .+...|.|+|.+ ..+ ....+..+..+. ..-+|.|.+++
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~----gnvsLvI~~l~ 95 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA----NTFFLVVTAAN 95 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC----CeEEEEEEeee
Confidence 788899999999998742 245689999942 211 011112222222 22469999999
Q ss_pred CCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECC
Q psy2775 81 KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 151 (785)
Q Consensus 81 ~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g 151 (785)
.+|.|.|+|.+..........-.|.+. .|..+...........-+...+.|...|+|.|.++|+-+.
T Consensus 96 lSDdGtY~C~fQkge~~~~k~ehLt~V----~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 96 ISHDGNYLCRMKLGETEVTKQEHLSVV----KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred ecCCceEEEEEEcCCCceeeeeeeeee----ecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 999999999998654433222222222 1111111110011111456789999888999999999754
No 229
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.71 E-value=2.3e-07 Score=74.02 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=58.9
Q ss_pred CCeEEecCCcEEEEEEEeC-CCceEEEEECCEEc--------ccCCCEEEEE-eCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775 423 QDVKVSRDEKASFEIELTK-GDALVKWYKDGKEI--------AFSENVTLSI-DGKKQKLIIFSAGLEDAGEYSCRVGDT 492 (785)
Q Consensus 423 ~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 492 (785)
.++.+.+|++++|.|.+.+ +...+.|++-+..+ ....++.... ++...+|+|.+++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5678899999999999998 45668888765332 2445666655 466788999999999999999999874
Q ss_pred CcceeEEEE
Q psy2775 493 GDKESKATL 501 (785)
Q Consensus 493 g~~~~~~~l 501 (785)
......+.+
T Consensus 85 p~~~~~~~~ 93 (95)
T cd05881 85 PPQEAYTTI 93 (95)
T ss_pred cCeEEEEEE
Confidence 333333333
No 230
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.70 E-value=8.2e-08 Score=80.90 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=57.7
Q ss_pred eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEE------c--------cCCCCEEEeecCCccceEEEEEEcccCC
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEP------L--------QETDEVVFSDQSDMHSYVSIVTIKSIKK 81 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 81 (785)
...|..+.+.+|++|+|.|.+.+.+...+.||+.... + ....++.+..... .....|+|.+++.
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~~~~ 79 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS--RKSSSLHISAAQL 79 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc--CCEEEEEECCCCH
Confidence 4567889999999999999998777789999985421 0 1223444433322 1335699999999
Q ss_pred CCCeEEEEEEEcCC
Q psy2775 82 REEGVYTVVAKNRE 95 (785)
Q Consensus 82 ~D~G~Y~C~a~~~~ 95 (785)
+|+|.|.|.+.+..
T Consensus 80 ~DsG~Y~C~~~~~~ 93 (109)
T cd04983 80 SDSAVYFCALSESG 93 (109)
T ss_pred HHCEEEEEEEecCC
Confidence 99999999998754
No 231
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.68 E-value=7.3e-08 Score=76.74 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=54.3
Q ss_pred ceEecCCCeEEEEEEE-Ee----cCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 21 PVYAEENSEVTLEVRL-VA----VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~-~g----~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
.+.+.+|.+..|.|.- .+ .+.+.++|||++.++...........++ +.|.|.++..+|+|.|+|++.+..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGS-----TYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCC-----CEEEEEEcChhhCEEEEEEEEEee
Confidence 4678899999999962 22 3567999999999887544322221221 249999999999999999999986
Q ss_pred eeE
Q psy2775 96 GEA 98 (785)
Q Consensus 96 ~~~ 98 (785)
+..
T Consensus 79 ~g~ 81 (95)
T cd05897 79 EGK 81 (95)
T ss_pred CCE
Confidence 544
No 232
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.67 E-value=1.5e-07 Score=74.33 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=51.2
Q ss_pred eEEEEEEEEe-cCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEE
Q psy2775 29 EVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99 (785)
Q Consensus 29 ~v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~ 99 (785)
.+.|+|.+.| .|.+.|+|++++..+....... ....+......+.|.|.....+|.|.|+|.|.|......
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 3689999987 5888999999999886432211 112233333456799998888899999999998765433
No 233
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.67 E-value=1.1e-07 Score=75.55 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=57.9
Q ss_pred CceEecCCCeEEEEEEE-E----------ecCCCeeEEEECCEEccCCCCE-----EEeecCCccceEEEEEEcccCCCC
Q psy2775 20 KPVYAEENSEVTLEVRL-V----------AVPEPDLLWYYNGEPLQETDEV-----VFSDQSDMHSYVSIVTIKSIKKRE 83 (785)
Q Consensus 20 ~~~~v~~G~~v~l~C~~-~----------g~p~~~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~D 83 (785)
....+.+|+.+.|.|.. . ......+.|+|++..+...... ++...+ ..|.|.++..+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~------~~Lwf~Pa~~eD 81 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE------DSIWFRPAELQD 81 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC------CEEEEEeCChhh
Confidence 45788999999999996 1 1123479999997555443321 222222 359999999999
Q ss_pred CeEEEEEEEcCCeeEEEEeeEEE
Q psy2775 84 EGVYTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 84 ~G~Y~C~a~~~~~~~~~~~~v~v 106 (785)
+|.|+|++.|........+.|+|
T Consensus 82 SG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 82 SGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CeEEEEEECCCCcceEEEEEEEC
Confidence 99999999998877766665543
No 234
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.63 E-value=3.8e-08 Score=76.52 Aligned_cols=73 Identities=21% Similarity=0.409 Sum_probs=50.3
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCC-CCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
|.+...........+. ++|.|.+.+.| .+.++|+ +..... ............+|.|.++.. +|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~-~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTR-SDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCG-GGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCH-HhCcEEEEEEEC
Confidence 5555555444444444 99999999997 7799999 111111 011222344567899999999 999999999987
No 235
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.61 E-value=1.2e-07 Score=76.37 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=55.3
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
|.+...+ ...|..|+.|+|.|... .|...+.|+|+|...... .....+....|.|.+++. +|+|.|+|.+.|.
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKR-EHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCCh-hHCEEEEEEEECC
Confidence 4444433 35788999999999886 677789999998764321 111234566799999999 9999999999986
No 236
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.59 E-value=7.6e-08 Score=74.80 Aligned_cols=74 Identities=31% Similarity=0.519 Sum_probs=53.5
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV 90 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 90 (785)
+|.|...+.......+. ++|.|.+.+.+ .+.+.|+ +.... ............++|.|.++..+|.|.|+|.
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~ 72 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS------FNSNSRGSSSSNSTLTISNVTRSDNGTYTCI 72 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE------EEEEEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc------eeeeeeeccceeeEEEEccCCHHhCcEEEEE
Confidence 57888888877777776 99999998776 7899999 11111 1111111222346799999999999999999
Q ss_pred EEc
Q psy2775 91 AKN 93 (785)
Q Consensus 91 a~~ 93 (785)
|.|
T Consensus 73 a~N 75 (75)
T PF13927_consen 73 ASN 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 986
No 237
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.56 E-value=3.1e-07 Score=77.27 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=54.7
Q ss_pred eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCE--Ec------c--------C--CCCEEEeecCCccceEEEEEEc
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGE--PL------Q--------E--TDEVVFSDQSDMHSYVSIVTIK 77 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~--~~------~--------~--~~~~~~~~~~~~~~~~~~L~i~ 77 (785)
...|..+.+.+|++++|.|.+.+ +...+.|||... .. . . ..++....... ...+|+|.
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~ 77 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL---TRSSLTIK 77 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC---CccEEEEC
Confidence 46788999999999999999977 667899999642 11 0 0 12222222111 23569999
Q ss_pred ccCCCCCeEEEEEEEcCC
Q psy2775 78 SIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 78 ~~~~~D~G~Y~C~a~~~~ 95 (785)
+++.+|+|.|.|.+.+..
T Consensus 78 ~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 78 SAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CCChhhCEEEEEEeeCCC
Confidence 999999999999998653
No 238
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.55 E-value=3e-07 Score=77.46 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=55.3
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCEE------e--------cCCCCeeEEee--CCeEEEEEccCCCCCCcee
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP------L--------LSSPKKREIFD--GENIILELKEADSETDAGD 629 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~------i--------~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~ 629 (785)
....+.+|++++|.|.+.+.+.+.+.|||.... + ....++.+... ...+.|+|.+++. +|+|.
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG~ 84 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SDSAV 84 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HHCEE
Confidence 466899999999999999887889999985320 0 11233333332 3678999999999 99999
Q ss_pred EEEEEEcCCc
Q psy2775 630 YKVVATNELG 639 (785)
Q Consensus 630 Y~C~a~n~~g 639 (785)
|.|.+.+..+
T Consensus 85 Y~C~~~~~~~ 94 (109)
T cd04983 85 YFCALSESGG 94 (109)
T ss_pred EEEEEecCCC
Confidence 9999997653
No 239
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.55 E-value=4.7e-07 Score=74.09 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=55.2
Q ss_pred eecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEE-----c----cC----------CCCEEEeecCCccceEEEEEE
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEP-----L----QE----------TDEVVFSDQSDMHSYVSIVTI 76 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~-----~----~~----------~~~~~~~~~~~~~~~~~~L~i 76 (785)
+.++.+..+.+|+++.|.|.........+.|||+... + .. +.|..+..+ ++|.|
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n-------gSL~I 74 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN-------GSLLI 74 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC-------CcEEE
Confidence 4466778899999999999853333358999996321 1 00 111111111 35999
Q ss_pred cccCCCCCeEEEEEEEcCC-eeEEEEeeEE
Q psy2775 77 KSIKKREEGVYTVVAKNRE-GEAKMDIPVK 105 (785)
Q Consensus 77 ~~~~~~D~G~Y~C~a~~~~-~~~~~~~~v~ 105 (785)
.+++.+|+|.|+|.+.+.. ......+.|.
T Consensus 75 ~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 75 QNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred ecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999999999877 3444444443
No 240
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.54 E-value=2.8e-07 Score=74.11 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=55.1
Q ss_pred CceecCCCceEeccCCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcC
Q psy2775 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188 (785)
Q Consensus 114 p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 188 (785)
|.+...+ ...+..|+.|+|+|... .+...+.|+++|................|.|.+++.+|+|.|+|++.+.
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4555444 34678999999999885 5677899999987644322222344567999999999999999999886
No 241
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.52 E-value=7.9e-07 Score=74.37 Aligned_cols=77 Identities=19% Similarity=0.406 Sum_probs=54.0
Q ss_pred CCceEecCCCeEEEEEEEEec----CCCeeEEEE---------------CCEEccC-----CCCEEEeecCCccceEEEE
Q psy2775 19 TKPVYAEENSEVTLEVRLVAV----PEPDLLWYY---------------NGEPLQE-----TDEVVFSDQSDMHSYVSIV 74 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~----p~~~i~W~~---------------~~~~~~~-----~~~~~~~~~~~~~~~~~~L 74 (785)
+..+.+..|++++|.|..... +...|.|.+ ++..... .+|+.+..+. .....+|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daSI 82 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGSI 82 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeEE
Confidence 567889999999999999653 235899943 2222211 1244444332 2234679
Q ss_pred EEcccCCCCCeEEEEEEEcCCee
Q psy2775 75 TIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 75 ~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
.|.+++.+|.|.|+|.+.|..+.
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCc
Confidence 99999999999999999987763
No 242
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.51 E-value=9.3e-07 Score=73.80 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=56.2
Q ss_pred ecCeEEEEEEEecCC------CCceEEEeCC-----E-Eec--CCCC--------eeEEe---eCCeEEEEEccCCCCCC
Q psy2775 572 EKGTIRLMAKVKASP------APSIVWFRNN-----K-PLL--SSPK--------KREIF---DGENIILELKEADSETD 626 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P------~p~v~W~~~~-----~-~i~--~~~~--------~~~~~---~~~~~~L~i~~~~~~~d 626 (785)
.|+.|+|.|...+.| .+.|.|+|.. . .+. .+.. .+... ..+..+|+|.+++. +|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence 389999999998764 3589999962 1 111 1111 11111 23567899999999 99
Q ss_pred ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 627 AGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 627 ~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+|.|.|.+.+..+..+..+.|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999988887887877775
No 243
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.50 E-value=1.1e-06 Score=73.39 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=54.7
Q ss_pred CCCeEEEEEEEEecC------CCeeEEEECC-----E-Ec--cCCCCE--------EEeecCCccceEEEEEEcccCCCC
Q psy2775 26 ENSEVTLEVRLVAVP------EPDLLWYYNG-----E-PL--QETDEV--------VFSDQSDMHSYVSIVTIKSIKKRE 83 (785)
Q Consensus 26 ~G~~v~l~C~~~g~p------~~~i~W~~~~-----~-~~--~~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~D 83 (785)
.|++|+|.|.....+ ...|.|++.. . .+ ...... +.... ........|+|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 489999999997653 4689999962 1 11 011111 11100 111234679999999999
Q ss_pred CeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 84 EGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 84 ~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+|.|.|.+.+..+.....+.|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999987777777777775
No 244
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.47 E-value=1.5e-06 Score=72.64 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=55.7
Q ss_pred ecCeEEEEEEEecCC------CCceEEEeCCE------E-e-cC----------CCCeeEEe-eCCeEEEEEccCCCCCC
Q psy2775 572 EKGTIRLMAKVKASP------APSIVWFRNNK------P-L-LS----------SPKKREIF-DGENIILELKEADSETD 626 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P------~p~v~W~~~~~------~-i-~~----------~~~~~~~~-~~~~~~L~i~~~~~~~d 626 (785)
.|++|+|.|.....| ...|.|+|... . + .. ..+..... ..+..+|.|.+++. +|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence 489999999988764 24699999531 1 1 10 01111111 12356899999999 99
Q ss_pred ceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 627 AGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 627 ~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+|.|.|.+.+..|..+..+.|.|.
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEE
Confidence 999999999999988888888876
No 245
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.47 E-value=1.2e-06 Score=73.23 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCCeEEEEEEEEecC------CCeeEEEECCEE-------c-cC----------CCCEEEeecCCccceEEEEEEcccCC
Q psy2775 26 ENSEVTLEVRLVAVP------EPDLLWYYNGEP-------L-QE----------TDEVVFSDQSDMHSYVSIVTIKSIKK 81 (785)
Q Consensus 26 ~G~~v~l~C~~~g~p------~~~i~W~~~~~~-------~-~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~ 81 (785)
.|++|+|.|.....| ...|.|+|.... + .. ..|+.+... ....++|+|.+++.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~ 77 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA---HDLDASLVITDLRL 77 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC---CCCcEEEEEccCCh
Confidence 489999999986553 357999986410 1 10 112222111 11235799999999
Q ss_pred CCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 82 REEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 82 ~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+|+|.|.|.+.+..+.....+.|+|.
T Consensus 78 ~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 78 EDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred HHCEEEEEEEEecccceEEEEEEEEE
Confidence 99999999999988888887777774
No 246
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.47 E-value=9.8e-07 Score=74.40 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=51.4
Q ss_pred cCCceEecCCCeEEEEEEEEecC----CCeeEEEEC----CEE--c---cC------C----CCEEEeecCCccceEEEE
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAVP----EPDLLWYYN----GEP--L---QE------T----DEVVFSDQSDMHSYVSIV 74 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~~----~~~--~---~~------~----~~~~~~~~~~~~~~~~~L 74 (785)
-|..+.+.+|++++|.|.....+ ...|.|++. +.. + .. . .|..+. .+.....+.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~--~~~~~~~~sL 81 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWD--GNIMRRDASI 81 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEe--cCCcCCceEE
Confidence 46789999999999999986443 246999852 111 1 00 0 111111 1112233669
Q ss_pred EEcccCCCCCeEEEEEEEcCCe
Q psy2775 75 TIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 75 ~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
+|.+++.+|+|.|+|.+.|..+
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 82 LIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred EEeeCChhhCEEEEEEEEeCCC
Confidence 9999999999999999998765
No 247
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.47 E-value=1.1e-06 Score=72.44 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=51.0
Q ss_pred cCeEEEEEEEecCCC---CceEEEeCCE--Ee---cC--------C----CCeeEEe---eCCeEEEEEccCCCCCCcee
Q psy2775 573 KGTIRLMAKVKASPA---PSIVWFRNNK--PL---LS--------S----PKKREIF---DGENIILELKEADSETDAGD 629 (785)
Q Consensus 573 g~~v~l~C~~~g~P~---p~v~W~~~~~--~i---~~--------~----~~~~~~~---~~~~~~L~i~~~~~~~d~G~ 629 (785)
|++|+|.|...+... ..+.|+|... .+ .. . .|..... ..+..+|+|.+++. +|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence 788999999864322 2688888541 11 00 0 1211111 13457899999999 99999
Q ss_pred EEEEEEcCCcceEEEEEEEE
Q psy2775 630 YKVVATNELGSATHGARVTV 649 (785)
Q Consensus 630 Y~C~a~n~~g~~~~~~~l~V 649 (785)
|+|.+.|..+..+..+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999998887666666655
No 248
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.46 E-value=6.9e-07 Score=74.54 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=53.3
Q ss_pred eeecCCceEecCCCeEEEEEEEEecC-CCeeEEEECCE-----Ecc---------CCCCEEEeecCCccceEEEEEEccc
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYYNGE-----PLQ---------ETDEVVFSDQSDMHSYVSIVTIKSI 79 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~i~W~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~ 79 (785)
+...|..+.+.+|++|+|+|.+.+.. ...+.|||... .+. ...++..... .....|+|.++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~----~~~~~L~I~~~ 78 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS----GTDFTLTISRV 78 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc----CCEEEEEECCC
Confidence 45678889999999999999987654 56799998531 110 0112222111 12356999999
Q ss_pred CCCCCeEEEEEEEcC
Q psy2775 80 KKREEGVYTVVAKNR 94 (785)
Q Consensus 80 ~~~D~G~Y~C~a~~~ 94 (785)
+.+|+|.|.|.+.+.
T Consensus 79 ~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 79 EPEDAAVYYCQQYGT 93 (106)
T ss_pred ChHHCEEEEEEEeCC
Confidence 999999999998753
No 249
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.45 E-value=6.7e-07 Score=75.23 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=52.8
Q ss_pred eeeeeeecCeEEEEEEEecCCCCceEEEeCCE--Ee-------------c---CCCCeeEEee-CCeEEEEEccCCCCCC
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PL-------------L---SSPKKREIFD-GENIILELKEADSETD 626 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~i-------------~---~~~~~~~~~~-~~~~~L~i~~~~~~~d 626 (785)
....+.+|++++|.|.+.+ +.+.+.|||... .. . ...++..... ...++|+|.+++. +|
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~-~D 83 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP-ED 83 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh-hh
Confidence 3568999999999999988 777899999532 10 0 0123332222 2567899999999 99
Q ss_pred ceeEEEEEEcCCc
Q psy2775 627 AGDYKVVATNELG 639 (785)
Q Consensus 627 ~G~Y~C~a~n~~g 639 (785)
+|.|.|.+.+..|
T Consensus 84 sg~Y~Ca~~~~~~ 96 (110)
T cd05899 84 SAVYLCASSLGGG 96 (110)
T ss_pred CEEEEEEeeCCCC
Confidence 9999999987643
No 250
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.44 E-value=1.9e-06 Score=71.10 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=51.8
Q ss_pred CCeEEEEEEEEecCC---CeeEEEECCE--Ec---cC------------CCCEEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775 27 NSEVTLEVRLVAVPE---PDLLWYYNGE--PL---QE------------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGV 86 (785)
Q Consensus 27 G~~v~l~C~~~g~p~---~~i~W~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 86 (785)
|++|+|.|....... ..+.|++... .+ .. ..|..+... .......+|+|.+++.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~sL~I~~v~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKD-AIAEGSVALRIHNVRASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecc-cccCCcEEEEEEcCChhhCEE
Confidence 789999999853322 3688988542 11 00 012222111 111223679999999999999
Q ss_pred EEEEEEcCCeeEEEEeeEEE
Q psy2775 87 YTVVAKNREGEAKMDIPVKV 106 (785)
Q Consensus 87 Y~C~a~~~~~~~~~~~~v~v 106 (785)
|+|.+.+..+..+..+.|+|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999988877777777765
No 251
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.43 E-value=1.7e-06 Score=71.17 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=52.8
Q ss_pred CeEEEEEEEecCC---CCceEEEeCCEE----e-----------cCCCCeeEEeeC---CeEEEEEccCCCCCCceeEEE
Q psy2775 574 GTIRLMAKVKASP---APSIVWFRNNKP----L-----------LSSPKKREIFDG---ENIILELKEADSETDAGDYKV 632 (785)
Q Consensus 574 ~~v~l~C~~~g~P---~p~v~W~~~~~~----i-----------~~~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C 632 (785)
++|+|.|...+.+ ...|.|+|.... + ....+.+..+.+ ...+|+|.+++. +|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence 4789999998765 337999995431 0 111112222222 457899999999 99999999
Q ss_pred EEEc-CCcceEEEEEEEE
Q psy2775 633 VATN-ELGSATHGARVTV 649 (785)
Q Consensus 633 ~a~n-~~g~~~~~~~l~V 649 (785)
.+.+ ..|...+...|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 6788888777776
No 252
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.42 E-value=2.7e-06 Score=65.23 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=52.8
Q ss_pred cEEEEEEEeC--CCceEEEEECCEEcccCCCEEEEE-eC--cEEEEEEccCCCCCcEEEEEEEeec--CcceeEEEEEEE
Q psy2775 432 KASFEIELTK--GDALVKWYKDGKEIAFSENVTLSI-DG--KKQKLIIFSAGLEDAGEYSCRVGDT--GDKESKATLTVE 504 (785)
Q Consensus 432 ~~~l~C~~~~--~~~~i~W~~~~~~~~~~~~~~~~~-~~--~~~~L~i~~~~~~d~G~Y~C~a~n~--g~~~~~~~l~V~ 504 (785)
.+.|.|.+.+ |.+.|+|+++++++.......... .+ ..+.|.|..-..+|...|+|+|.|. .....+..|.|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 3689999998 778899999999986543211111 12 3678888888888888899999995 335556666665
Q ss_pred c
Q psy2775 505 A 505 (785)
Q Consensus 505 ~ 505 (785)
.
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 3
No 253
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.42 E-value=3e-06 Score=65.00 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=49.8
Q ss_pred EEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 30 VTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 30 v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
+.|.|.+.|. |.+.|.||+++.++...... .....+.....++|.|..-..+|+..|+|+|.|..-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 6899999654 88999999999998665322 223334455668899987777788899999998764
No 254
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.42 E-value=7.8e-07 Score=72.72 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=57.3
Q ss_pred cCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 25 EENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 25 ~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
..|+.++|.|.+.|. |. +.|+|++++..+..... ......++.....+.|.|......|.|.|+|+|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 579999999999988 53 68999999998876543 233344555556678989888888999999999987653
No 255
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.41 E-value=1.8e-06 Score=71.57 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=54.0
Q ss_pred ecCeEEEEEEEecCC------------CCceEEEeCC--E--E-ec-C------C----CCeeEEe---eCCeEEEEEcc
Q psy2775 572 EKGTIRLMAKVKASP------------APSIVWFRNN--K--P-LL-S------S----PKKREIF---DGENIILELKE 620 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P------------~p~v~W~~~~--~--~-i~-~------~----~~~~~~~---~~~~~~L~i~~ 620 (785)
.|++|+|.|...... .+.|.|+|.. . . +. . . .|..... ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987542 3589999842 1 1 10 0 0 1222211 23567899999
Q ss_pred CCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 621 ADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 621 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
++. +|+|.|.|.+.+..........|.|.
T Consensus 81 l~~-sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRS-NDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred ccc-ccCEEEEEEEecCCCCceeEEEEEEE
Confidence 999 99999999999877777776666665
No 256
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.41 E-value=1.3e-06 Score=72.46 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=53.5
Q ss_pred CCCeEEEEEEEEecC------------CCeeEEEECCE----E-cc-CC----------CCEEEeecCCccceEEEEEEc
Q psy2775 26 ENSEVTLEVRLVAVP------------EPDLLWYYNGE----P-LQ-ET----------DEVVFSDQSDMHSYVSIVTIK 77 (785)
Q Consensus 26 ~G~~v~l~C~~~g~p------------~~~i~W~~~~~----~-~~-~~----------~~~~~~~~~~~~~~~~~L~i~ 77 (785)
.|++|+|.|...... .+.|.|+|... . +. .. +|..+.... ......+|+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~-~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP-AIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC-CCCCCcEEEEe
Confidence 489999999996442 35899998521 1 10 00 123232110 01123679999
Q ss_pred ccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 78 SIKKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 78 ~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+++.+|+|.|+|.+.+........+.|.|.
T Consensus 80 nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 80 ELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred ecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 999999999999999877666666666664
No 257
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.41 E-value=9.7e-07 Score=73.80 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=52.2
Q ss_pred eeeecCeEEEEEEEecC-CCCceEEEeCCE-----Eec------------CCCCeeEEeeC--CeEEEEEccCCCCCCce
Q psy2775 569 TVKEKGTIRLMAKVKAS-PAPSIVWFRNNK-----PLL------------SSPKKREIFDG--ENIILELKEADSETDAG 628 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~-----~i~------------~~~~~~~~~~~--~~~~L~i~~~~~~~d~G 628 (785)
.+.+|+.++|.|.+.+. +...+.|+|... .+. ...+....... ...+|+|.+++. +|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence 57789999999999986 666899999432 110 11233333333 567999999999 9999
Q ss_pred eEEEEEEcCCc
Q psy2775 629 DYKVVATNELG 639 (785)
Q Consensus 629 ~Y~C~a~n~~g 639 (785)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998775
No 258
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.40 E-value=1.2e-06 Score=73.08 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=52.3
Q ss_pred eeeeeeeecCeEEEEEEEecCC-CCceEEEeCC--E---Eec---------CCCCeeEEeeCCeEEEEEccCCCCCCcee
Q psy2775 565 FEEKTVKEKGTIRLMAKVKASP-APSIVWFRNN--K---PLL---------SSPKKREIFDGENIILELKEADSETDAGD 629 (785)
Q Consensus 565 ~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~--~---~i~---------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~ 629 (785)
+....+.+|++|+|.|.+.+.. ...+.|||.. . .+. ...++.....+..+.|+|.+++. +|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsg~ 85 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP-EDAAV 85 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh-HHCEE
Confidence 3456789999999999998775 5689999843 1 111 01233333344567899999999 99999
Q ss_pred EEEEEEcC
Q psy2775 630 YKVVATNE 637 (785)
Q Consensus 630 Y~C~a~n~ 637 (785)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99999764
No 259
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.40 E-value=1.1e-06 Score=73.50 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=51.8
Q ss_pred eEecCCCeEEEEEEEEec-CCCeeEEEECCEE-----c------------cCCCCEEEeecCCccceEEEEEEcccCCCC
Q psy2775 22 VYAEENSEVTLEVRLVAV-PEPDLLWYYNGEP-----L------------QETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83 (785)
Q Consensus 22 ~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 83 (785)
+.+.+|++++|.|.+.+. +...+.|++.... + ....++.+..... .....|+|.+++.+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL~I~~v~~~D 78 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS--KSSFTLTISSLQPED 78 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc--CCEEEEEECCCCHHH
Confidence 468899999999999876 6678999985421 1 0112333333321 123569999999999
Q ss_pred CeEEEEEEEcCCe
Q psy2775 84 EGVYTVVAKNREG 96 (785)
Q Consensus 84 ~G~Y~C~a~~~~~ 96 (785)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999997664
No 260
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.39 E-value=1.4e-06 Score=74.24 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=54.1
Q ss_pred eecCCceEecCCCeEEEEEEEEe--cCCCeeEEEECC--EEc------c-----------CCCCEEEeecCCccceEEEE
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVA--VPEPDLLWYYNG--EPL------Q-----------ETDEVVFSDQSDMHSYVSIV 74 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g--~p~~~i~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~L 74 (785)
.+.|..+.+.+|++|+|.|.+.+ .+...+.||+.. ... . ...++.+..+.. .....|
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L 79 (116)
T cd04982 2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG--KSTSTL 79 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC--CCEEEE
Confidence 34678899999999999999977 567789999952 110 0 122333332221 123569
Q ss_pred EEcccCCCCCeEEEEEEEc
Q psy2775 75 TIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 75 ~i~~~~~~D~G~Y~C~a~~ 93 (785)
+|.+++.+|+|.|.|.+..
T Consensus 80 ~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 80 TIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEECCHHHCEEEEEEEec
Confidence 9999999999999999874
No 261
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.39 E-value=1.8e-06 Score=73.29 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=51.9
Q ss_pred cCCceEecCCCeEEEEEEEEecC----CCeeEEEECCE------Ecc---C-------C----CCEEEeecCCccceEEE
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAVP----EPDLLWYYNGE------PLQ---E-------T----DEVVFSDQSDMHSYVSI 73 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~p----~~~i~W~~~~~------~~~---~-------~----~~~~~~~~~~~~~~~~~ 73 (785)
.|..+.+.+|++++|.|..+... ...+.|++... .+. . . .|..+. ++.....++
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~s 81 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV--GNPSRKDAS 81 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe--cCCcCCeeE
Confidence 47788999999999999986432 24699987431 010 0 0 111111 111122367
Q ss_pred EEEcccCCCCCeEEEEEEEcCCee
Q psy2775 74 VTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 74 L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
|+|.+++.+|+|.|.|.+.+....
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999999987553
No 262
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.38 E-value=1.5e-06 Score=69.63 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=51.1
Q ss_pred eeeeeeeecCeEEEEEEEec-CCCCc--eEEEeCCEEecCCCCeeE--EeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 565 FEEKTVKEKGTIRLMAKVKA-SPAPS--IVWFRNNKPLLSSPKKRE--IFDGENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 565 ~~~~~v~~g~~v~l~C~~~g-~P~p~--v~W~~~~~~i~~~~~~~~--~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
+.+..+.+|+.++|+|.+.| .|.+. |.|||+++++........ ......++|++..-.. +|.-.|+|+|.++.+
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~-D~g~~~sC~A~l~l~ 86 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDRE-DHGANFSCETELDLR 86 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchh-hCCcEEEEEEEeccC
Confidence 33556789999999999987 47775 799999999864321100 0122345677764433 444479999999876
Q ss_pred c
Q psy2775 640 S 640 (785)
Q Consensus 640 ~ 640 (785)
.
T Consensus 87 ~ 87 (100)
T cd05755 87 P 87 (100)
T ss_pred c
Confidence 4
No 263
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.38 E-value=2.5e-06 Score=70.11 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=50.9
Q ss_pred CeEEEEEEEEecC---CCeeEEEECCEE----c-----------cC--CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 28 SEVTLEVRLVAVP---EPDLLWYYNGEP----L-----------QE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 28 ~~v~l~C~~~g~p---~~~i~W~~~~~~----~-----------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
++|+|.|.....+ ...|.|+|.... + .. ..+..+.... . ....|+|.+++.+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~--~~~sL~I~~v~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-L--EDATISISNLRLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-C--CceEEEEccCCcccCEEE
Confidence 5799999997654 347999996531 0 00 1122221111 0 235799999999999999
Q ss_pred EEEEEc-CCeeEEEEeeEEE
Q psy2775 88 TVVAKN-REGEAKMDIPVKV 106 (785)
Q Consensus 88 ~C~a~~-~~~~~~~~~~v~v 106 (785)
.|.+.. ..|.....+.|.|
T Consensus 78 ~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 78 ICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEEeCCCCcEEEEEEEEe
Confidence 999874 6677777777776
No 264
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.37 E-value=2.6e-06 Score=66.83 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=44.3
Q ss_pred EEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEe-eCC----eEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 576 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF-DGE----NIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 576 v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~-~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
++|.|.+.|. |.+.|+|+++++++.... ..... .++ .+.|.+..... ++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhcCC
Confidence 6899999775 999999999999986433 22222 222 23455554444 66778999999987653
No 265
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.37 E-value=3.7e-06 Score=70.17 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=54.1
Q ss_pred CCCeEEEEEEEEecC----------CCeeEEEECC--EE---c-cCC----------CCEEEeecCCccceEEEEEEccc
Q psy2775 26 ENSEVTLEVRLVAVP----------EPDLLWYYNG--EP---L-QET----------DEVVFSDQSDMHSYVSIVTIKSI 79 (785)
Q Consensus 26 ~G~~v~l~C~~~g~p----------~~~i~W~~~~--~~---~-~~~----------~~~~~~~~~~~~~~~~~L~i~~~ 79 (785)
.|++|+|+|.....+ ...|.|++.. .. + ... +|..+... ......+.|+|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~-~~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNY-PENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccC-CCCCCcEEEEECCC
Confidence 489999999996543 2579999852 11 0 001 12222111 01123366999999
Q ss_pred CCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 80 KKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 80 ~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+.+|+|.|.|.+.......+..+.|.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 80 RSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred ChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 9999999999999877667777777775
No 266
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.35 E-value=3.9e-06 Score=70.21 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=55.7
Q ss_pred eeeeeeecCeEEEEEEEecCC----CCceEEE---------------eCCEEecCC-CC--eeEEe----eCCeEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASP----APSIVWF---------------RNNKPLLSS-PK--KREIF----DGENIILELK 619 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P----~p~v~W~---------------~~~~~i~~~-~~--~~~~~----~~~~~~L~i~ 619 (785)
.+..+..|+.++|.|...... ...|.|. ++|...... .. -++.+ ..+..+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 366789999999999987643 3489993 334443211 10 12222 2345689999
Q ss_pred cCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 620 EADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 620 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
+++. +|+|.|+|.+.|.-+.......+.+
T Consensus 86 nv~~-sD~G~Y~C~v~n~p~~~~~~~~~~l 114 (116)
T cd05879 86 NLDY-TDNGTFTCDVKNPPDIVGKSSQVTL 114 (116)
T ss_pred cCCc-ccCEEEEEEEEcCCCcCCceeEEEE
Confidence 9999 9999999999998765444444443
No 267
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.35 E-value=3.2e-06 Score=66.36 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=49.0
Q ss_pred EEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 30 VTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 30 v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
++|.|.+.+. |.+.|.|++++..+...........++.....+.|.+.....+|.+.|+|+|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999665 8899999999998865432222223334445567888776677788999999987653
No 268
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.32 E-value=2e-06 Score=70.06 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=53.1
Q ss_pred eecCeEEEEEEEec-CCCCceEEEeCCEEecC-------------CCC--eeEEeeCCeEEEEEccCCCCCCceeEEEEE
Q psy2775 571 KEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLS-------------SPK--KREIFDGENIILELKEADSETDAGDYKVVA 634 (785)
Q Consensus 571 ~~g~~v~l~C~~~g-~P~p~v~W~~~~~~i~~-------------~~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a 634 (785)
..|++|+|.|.... .....+.|+|....+.. +++ .+.......+.|+|.+++. +|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~-~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKM-EDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCch-HHCEEEEEEE
Confidence 36999999998764 34447999986533211 011 1233345568899999999 9999999999
Q ss_pred EcCCcce-EEEEEEEE
Q psy2775 635 TNELGSA-THGARVTV 649 (785)
Q Consensus 635 ~n~~g~~-~~~~~l~V 649 (785)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887654 33344443
No 269
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.31 E-value=1.1e-06 Score=71.57 Aligned_cols=82 Identities=16% Similarity=0.309 Sum_probs=51.6
Q ss_pred cCCCeEEEEEEEEe-cCCCeeEEEECCEEccCC------CCEEEee-----cCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 25 EENSEVTLEVRLVA-VPEPDLLWYYNGEPLQET------DEVVFSD-----QSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 25 ~~G~~v~l~C~~~g-~p~~~i~W~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
..|++|+|.|.... .....+.|+++...+... ....... .-........|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998754 344679999875432110 1111100 00001112569999999999999999999
Q ss_pred cCCeeE-EEEeeEEE
Q psy2775 93 NREGEA-KMDIPVKV 106 (785)
Q Consensus 93 ~~~~~~-~~~~~v~v 106 (785)
...+.. ...+.|+|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 876543 45566665
No 270
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.31 E-value=5.1e-06 Score=67.10 Aligned_cols=75 Identities=12% Similarity=0.179 Sum_probs=52.3
Q ss_pred CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
|.|...| ...|.+|++|+|.|.... ....+.|+|++..... ............+.|.|.+++.+|+|.|+|...
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~----~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPV----LHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCc----eecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 5565555 667889999999998754 4567999998865321 110111112234679999999999999999986
Q ss_pred c
Q psy2775 93 N 93 (785)
Q Consensus 93 ~ 93 (785)
.
T Consensus 76 ~ 76 (94)
T cd05711 76 Y 76 (94)
T ss_pred C
Confidence 3
No 271
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.29 E-value=1.9e-06 Score=70.35 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=49.9
Q ss_pred eecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCC-eeEEe-eCCe----EEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 571 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK-KREIF-DGEN----IILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 571 ~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~-~~~~~-~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
..|+.++|.|.+.|+ |. +.|+|+++|..+..... ..... .++. +.|.+..... +|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence 468999999999998 64 58999999999866543 11222 2222 3466666554 6999999999998664
No 272
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.28 E-value=6.8e-06 Score=64.44 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=45.3
Q ss_pred EEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCC--e----EEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 576 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGE--N----IILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 576 v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~--~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
++|.|.+.|. |.+.|+|+++|+++..... ....++. . ++|.|..... +|...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~-d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTRE-DDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecch-hCCCEEEEEEECcccCC
Confidence 6899999886 9999999999999865432 2322222 2 3455555444 67788999999987543
No 273
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.27 E-value=3.8e-06 Score=68.77 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=50.4
Q ss_pred eeeeeecCeEEEEEEEecCCCC--ceEEEeCCE-----Eec---CC----------CCeeEEeeCCeEEEEEccCCCCCC
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAP--SIVWFRNNK-----PLL---SS----------PKKREIFDGENIILELKEADSETD 626 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~-----~i~---~~----------~~~~~~~~~~~~~L~i~~~~~~~d 626 (785)
+..+.+|+.+.|.|.- .|.. .+.|||+.. .|. .. .....+. .+++|.|++++. +|
T Consensus 7 p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~--~ngSL~I~~v~~-~D 81 (105)
T cd05774 7 PPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY--PNGSLLIQNVTQ-KD 81 (105)
T ss_pred CCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe--CCCcEEEecCCc-cc
Confidence 5578899999999864 4555 899999531 110 00 0111111 134799999999 99
Q ss_pred ceeEEEEEEcCCc-ceEEEEEE
Q psy2775 627 AGDYKVVATNELG-SATHGARV 647 (785)
Q Consensus 627 ~G~Y~C~a~n~~g-~~~~~~~l 647 (785)
+|.|+|.+.|..+ .......|
T Consensus 82 ~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 82 TGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred CEEEEEEEEeCCccEEEEEEEE
Confidence 9999999999873 34444443
No 274
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.27 E-value=4.6e-06 Score=66.88 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=51.3
Q ss_pred ceEeccCCcEEEEEEEec-cCCCe--EEEeECCEEcccceEEE-----eCCEEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775 122 DVSITEGESAVLSVQVGG-EPSPK--VEWYKDGKLIKDRQITS-----EKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190 (785)
Q Consensus 122 ~~~~~~G~~v~l~C~~~g-~p~~~--v~W~~~g~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 190 (785)
...+.+|+.++|+|.+.| .|.+. |.||+++..+....... .....+|.+...+.+|...|+|+|.+..+
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 344679999999999965 67665 79999999997654322 22355777776666677799999988764
No 275
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.26 E-value=1.1e-05 Score=66.52 Aligned_cols=80 Identities=15% Similarity=0.258 Sum_probs=53.5
Q ss_pred CCeEEEEEEEEecC-----------CCeeEEEECC-----E-----Ec--cC----------CCCEEEeecCCccceEEE
Q psy2775 27 NSEVTLEVRLVAVP-----------EPDLLWYYNG-----E-----PL--QE----------TDEVVFSDQSDMHSYVSI 73 (785)
Q Consensus 27 G~~v~l~C~~~g~p-----------~~~i~W~~~~-----~-----~~--~~----------~~~~~~~~~~~~~~~~~~ 73 (785)
|.+++|+|.+.-.| .+.|.|++-. . .+ .. ..|..+... ....+..+
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~-~~~~g~as 80 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSH-PEDQGDAS 80 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeecc-CCcCCceE
Confidence 78999999997443 2489998741 1 11 00 112222211 11123477
Q ss_pred EEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 74 L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
|+|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999999999999888777777777764
No 276
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.26 E-value=4.4e-06 Score=71.01 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=54.5
Q ss_pred eeecCCceEecCCCeEEEEEEEEec-CCCeeEEEECCE--E---c---------cCCCCEEEeecCCccceEEEEEEccc
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGE--P---L---------QETDEVVFSDQSDMHSYVSIVTIKSI 79 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~L~i~~~ 79 (785)
+...|..+.+.+|++|+|+|..... ....+.||+... . + ...+|+.+..+.. ....+|+|.++
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I~~~ 79 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKA--QKSISLTISAL 79 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEecc--CCEEEEEECCC
Confidence 4567889999999999999998653 456799998421 1 1 0123444332211 12356999999
Q ss_pred CCCCCeEEEEEEEcC
Q psy2775 80 KKREEGVYTVVAKNR 94 (785)
Q Consensus 80 ~~~D~G~Y~C~a~~~ 94 (785)
+.+|+|.|.|.+...
T Consensus 80 ~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 80 QLEDSAKYFCALSTL 94 (116)
T ss_pred CHHHCEEEEEEEECC
Confidence 999999999999853
No 277
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.26 E-value=3.9e-06 Score=68.07 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=48.5
Q ss_pred CCeEEEEEEEEecCCCeeEEEECCEEccC--------C----------CCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775 27 NSEVTLEVRLVAVPEPDLLWYYNGEPLQE--------T----------DEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88 (785)
Q Consensus 27 G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 88 (785)
|++|+|.|.....+...|.|+++...... . .+..+. . ...|+|.+++.+|+|.|+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~-----~~sL~I~~l~~~DsG~Y~ 73 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P-----NGSLLIQNLTKEDSGTYT 73 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C-----CceEEEccCCchhcEEEE
Confidence 89999999987656678999997643211 0 111111 1 145999999999999999
Q ss_pred EEEEcCCee-EEEEeeE
Q psy2775 89 VVAKNREGE-AKMDIPV 104 (785)
Q Consensus 89 C~a~~~~~~-~~~~~~v 104 (785)
|.+....+. ....+.|
T Consensus 74 c~v~~~~~~~~~~~~~l 90 (92)
T cd05741 74 LQIISTNGVTENAKFFL 90 (92)
T ss_pred EEEEcCCCcEEEEEEEE
Confidence 999987643 3334444
No 278
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.25 E-value=4.3e-06 Score=71.15 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=52.3
Q ss_pred eeeeeecCeEEEEEEEec--CCCCceEEEeCC--EE---e---c-----------CCCCeeEEeeC--CeEEEEEccCCC
Q psy2775 567 EKTVKEKGTIRLMAKVKA--SPAPSIVWFRNN--KP---L---L-----------SSPKKREIFDG--ENIILELKEADS 623 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~--~~---i---~-----------~~~~~~~~~~~--~~~~L~i~~~~~ 623 (785)
...+.+|++++|.|.+.+ .+.+.+.|||.. .. | . ...++.+..+. ..+.|+|.+++.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 457889999999999988 677899999942 11 0 0 12334444444 578999999999
Q ss_pred CCCceeEEEEEEcC
Q psy2775 624 ETDAGDYKVVATNE 637 (785)
Q Consensus 624 ~~d~G~Y~C~a~n~ 637 (785)
+|+|.|.|.+...
T Consensus 87 -~Dsg~Y~C~~~~~ 99 (116)
T cd04982 87 -EDSATYYCAYWES 99 (116)
T ss_pred -HHCEEEEEEEecC
Confidence 9999999999753
No 279
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.25 E-value=1.1e-05 Score=63.29 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=49.5
Q ss_pred EEEEEEEEec-CCCeeEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 30 VTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 30 v~l~C~~~g~-p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
++|+|.+.|. |.+.|.|+++|..+...........+ +.....+.|.|.....+|...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899999775 88999999999988664432222222 2344457788877777888999999998764
No 280
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.24 E-value=7.5e-06 Score=69.01 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=50.3
Q ss_pred eeeeeeecCeEEEEEEEecCCC----CceEEEeC----CEE--e---c------CCCCe--eEEe----eCCeEEEEEcc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPA----PSIVWFRN----NKP--L---L------SSPKK--REIF----DGENIILELKE 620 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~----~~~--i---~------~~~~~--~~~~----~~~~~~L~i~~ 620 (785)
..+.+.+|+.++|.|.....++ ..|.|++. +.+ + . ...++ +..+ ..+..+|+|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 4678999999999999875432 36999752 211 1 0 01111 1111 12456899999
Q ss_pred CCCCCCceeEEEEEEcCCcc
Q psy2775 621 ADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 621 ~~~~~d~G~Y~C~a~n~~g~ 640 (785)
++. +|+|.|.|.+.|..+.
T Consensus 86 v~~-~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQP-TDNGTYTCQVKNPPDV 104 (115)
T ss_pred CCh-hhCEEEEEEEEeCCCC
Confidence 999 9999999999987664
No 281
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.24 E-value=9.8e-06 Score=66.94 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=54.0
Q ss_pred CCCeEEEEEEEEecC-------CCeeEEEECC-----EEc----cC----------CCCEEEeecCCccceEEEEEEccc
Q psy2775 26 ENSEVTLEVRLVAVP-------EPDLLWYYNG-----EPL----QE----------TDEVVFSDQSDMHSYVSIVTIKSI 79 (785)
Q Consensus 26 ~G~~v~l~C~~~g~p-------~~~i~W~~~~-----~~~----~~----------~~~~~~~~~~~~~~~~~~L~i~~~ 79 (785)
.|++|+|+|...-.| .+.|.|.+.. ..+ .. ..|..+... .......+|+|.++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~-~~~~~~asL~i~nv 79 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGY-PKNRYNASLVLSRL 79 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecC-CCCCceEEEEECCC
Confidence 378999999975322 3689999851 111 01 123333321 12224478999999
Q ss_pred CCCCCeEEEEEEEcCCeeEEEEeeEEEe
Q psy2775 80 KKREEGVYTVVAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 80 ~~~D~G~Y~C~a~~~~~~~~~~~~v~v~ 107 (785)
+.+|+|.|+|.+.......+..+.|.|.
T Consensus 80 ~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 80 RYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred CHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999999877666677777764
No 282
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.23 E-value=4.7e-06 Score=68.31 Aligned_cols=68 Identities=16% Similarity=0.321 Sum_probs=50.5
Q ss_pred eeeecCeEEEEEEEecC--CCCceEEEeCCE---E--ec---------CCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775 569 TVKEKGTIRLMAKVKAS--PAPSIVWFRNNK---P--LL---------SSPKKREIFDGENIILELKEADSETDAGDYKV 632 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~--P~p~v~W~~~~~---~--i~---------~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C 632 (785)
.+.+|++++|.|.+.+. ....+.|||... + +. ..+++....++....|+|.+++. +|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQT-EDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCh-hhCEEEEE
Confidence 57789999999999875 556799998432 1 10 12244444555678899999999 99999999
Q ss_pred EEEcC
Q psy2775 633 VATNE 637 (785)
Q Consensus 633 ~a~n~ 637 (785)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98764
No 283
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.22 E-value=4.8e-06 Score=68.29 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=47.5
Q ss_pred eEecCCCeEEEEEEEEec--CCCeeEEEECCE--Ec---c---------CCCCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775 22 VYAEENSEVTLEVRLVAV--PEPDLLWYYNGE--PL---Q---------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEG 85 (785)
Q Consensus 22 ~~v~~G~~v~l~C~~~g~--p~~~i~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 85 (785)
+.|.+|++|+|.|.+.+. ....+.||+... .. . ...++...... ....|+|.+++.+|+|
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~----~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG----NTASLTISGAQTEDEA 76 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC----CEEEEEECCCChhhCE
Confidence 368899999999998764 446799998542 11 0 01233322211 2356999999999999
Q ss_pred EEEEEEEcC
Q psy2775 86 VYTVVAKNR 94 (785)
Q Consensus 86 ~Y~C~a~~~ 94 (785)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998753
No 284
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.20 E-value=0.00021 Score=70.83 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=55.2
Q ss_pred EEEEEEccCCCCCcEEEEEEEeec-Ccce--eEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecc
Q psy2775 469 KQKLIIFSAGLEDAGEYSCRVGDT-GDKE--SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLF 545 (785)
Q Consensus 469 ~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 545 (785)
...|+|..++...+|.|+=...+. +... ..+.+....+ |++.+.
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~--------Psvsv~------------------------- 227 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRR--------PSLSIR------------------------- 227 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecC--------Cccccc-------------------------
Confidence 456999999999999999997764 3333 3333333333 222221
Q ss_pred cccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC--ceEEEeCCEEecC
Q psy2775 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLS 601 (785)
Q Consensus 546 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~~ 601 (785)
...+.+|+...-.|.+..+ |+- .+.||+||.++..
T Consensus 228 ---------------------~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 228 ---------------------PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred ---------------------CCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 3357789999999999886 544 6899999998853
No 285
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.20 E-value=1.8e-05 Score=65.61 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=52.2
Q ss_pred ceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEEEeecC-CccceEEEEEEcccCCCCCe-EEEEEEEcCCe
Q psy2775 21 PVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVVFSDQS-DMHSYVSIVTIKSIKKREEG-VYTVVAKNREG 96 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G-~Y~C~a~~~~~ 96 (785)
......|+.++|.|.+.|. |. ..++|++||+.+...........+ +.+...+.|.+.. ...|.| .|+|.+.+...
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 4456689999999999886 53 689999999998653322222222 3555567788875 445544 59999998764
Q ss_pred e
Q psy2775 97 E 97 (785)
Q Consensus 97 ~ 97 (785)
.
T Consensus 94 ~ 94 (111)
T cd05772 94 Q 94 (111)
T ss_pred C
Confidence 3
No 286
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.20 E-value=1.1e-05 Score=67.27 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=54.5
Q ss_pred ecCeEEEEEEEecCCC----------CceEEEeCC--EEe--c--------CCCCe--eEEe-----eCCeEEEEEccCC
Q psy2775 572 EKGTIRLMAKVKASPA----------PSIVWFRNN--KPL--L--------SSPKK--REIF-----DGENIILELKEAD 622 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P~----------p~v~W~~~~--~~i--~--------~~~~~--~~~~-----~~~~~~L~i~~~~ 622 (785)
.|+.|+|.|.....+. ..|.|+|.. ... . ..+.+ +... ..+...|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999999986542 469999952 111 0 01111 1111 2356789999999
Q ss_pred CCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 623 SETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 623 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
. +|+|.|.|.+.......+....|.|.
T Consensus 81 ~-sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 S-SDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred h-hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 9 99999999999877777777777775
No 287
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.19 E-value=1.7e-05 Score=67.36 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=54.8
Q ss_pred eeecCCceEecCCCeEEEEEEEE-ecCCCeeEEEECCE-----Ecc---C-----------CCCEEEeecCCccceEEEE
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGE-----PLQ---E-----------TDEVVFSDQSDMHSYVSIV 74 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~-----~~~---~-----------~~~~~~~~~~~~~~~~~~L 74 (785)
+...|..+.+.+|+++.|.|... ......+.|++... .+. . ..+..+..... ....+|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~sL 81 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS--QNNFSL 81 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT--TTEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc--CCeEEE
Confidence 34458899999999999999998 44556899998322 111 0 11222222222 123569
Q ss_pred EEcccCCCCCeEEEEEEEcC
Q psy2775 75 TIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 75 ~i~~~~~~D~G~Y~C~a~~~ 94 (785)
+|.+++.+|+|.|.|.+...
T Consensus 82 ~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 82 TIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EESSESGGGEEEEEEEEEES
T ss_pred EECCCCcCcCEEEEEEEEEC
Confidence 99999999999999999976
No 288
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.17 E-value=6.5e-06 Score=67.56 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=50.0
Q ss_pred eEecCCCeEEEEEEEEe-cCCCeeEEEECCEE-----c--------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 22 VYAEENSEVTLEVRLVA-VPEPDLLWYYNGEP-----L--------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 22 ~~v~~G~~v~l~C~~~g-~p~~~i~W~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
+.+.+|++|+|.|.... .....+.|++.... + ....++.+..+. .....+|+|.+++.+|+|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP--DNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC--CCCEEEEEEcCCCHHHCEEE
Confidence 57889999999999854 24567899986421 1 011334333222 12335799999999999999
Q ss_pred EEEEEcCC
Q psy2775 88 TVVAKNRE 95 (785)
Q Consensus 88 ~C~a~~~~ 95 (785)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99998654
No 289
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.16 E-value=1e-05 Score=63.19 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=44.0
Q ss_pred EEEEEEEec-CCCCceEEEeCCEEecCCCCeeEEee-CC----eEEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 576 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFD-GE----NIILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 576 v~l~C~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~-~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
++|.|.+.| +|.+.|+|+|||+++........... ++ .++|.+..-.. ++...|+|.|.|....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechhcC
Confidence 689999988 48889999999999865432222221 11 23566765444 6677799999997654
No 290
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.15 E-value=1.2e-05 Score=68.10 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=49.8
Q ss_pred eeeeeeecCeEEEEEEEecCC----CCceEEEeCCE------Eec----------CCCCe--eEEe----eCCeEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASP----APSIVWFRNNK------PLL----------SSPKK--REIF----DGENIILELK 619 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P----~p~v~W~~~~~------~i~----------~~~~~--~~~~----~~~~~~L~i~ 619 (785)
....+.+|+.++|.|...... ...+.|++... .+. ...++ +..+ ..+.++|+|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 466889999999999987542 24699987321 110 01111 1111 1234789999
Q ss_pred cCCCCCCceeEEEEEEcCCcc
Q psy2775 620 EADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 620 ~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
+++. +|+|.|.|.+.|.-+.
T Consensus 86 ~v~~-~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 86 NLQF-TDNGTYTCDVKNPPDI 105 (116)
T ss_pred eCCc-ccCEEEEEEEEeCCCC
Confidence 9999 9999999999987554
No 291
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.14 E-value=1.5e-05 Score=62.37 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=48.8
Q ss_pred EEEEEEEEe-cCCCeeEEEECCEEccCCCCEEEe-ecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 30 VTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFS-DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 30 v~l~C~~~g-~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
++|.|.+.| .|.+.|+|++++..+......... ..++.....+.|.+.....+|...|+|+|.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999976 477899999999998654322222 2333444567788887677788899999998654
No 292
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.14 E-value=1e-05 Score=65.57 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=46.9
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecC--------C------CC--eeEEeeCCeEEEEEccCCCCCCceeEEEEEEc
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLS--------S------PK--KREIFDGENIILELKEADSETDAGDYKVVATN 636 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~--------~------~~--~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n 636 (785)
|++|+|.|.....+...|.|+|+...... . .. .+.... ..++|.|.+++. +|+|.|+|.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~l~~-~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-PNGSLLIQNLTK-EDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-CCceEEEccCCc-hhcEEEEEEEEc
Confidence 78999999988766668999997633211 0 00 011122 237899999999 999999999998
Q ss_pred CCcc
Q psy2775 637 ELGS 640 (785)
Q Consensus 637 ~~g~ 640 (785)
..|.
T Consensus 79 ~~~~ 82 (92)
T cd05741 79 TNGV 82 (92)
T ss_pred CCCc
Confidence 8643
No 293
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.13 E-value=1.4e-05 Score=64.14 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=58.4
Q ss_pred CeeeecCCceEecCCCeEEEEEEE-EecCCCeeEEEECCEEccCCCC-EEEeecCCccceEEEEEEcccCCCCCeEEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDE-VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVV 90 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 90 (785)
|.|......+... |+.+.|+|.+ .|+|.+.|.|+.++..+..... ......++.....++|++..-..+|...++|.
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~ 79 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCR 79 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEE
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEE
Confidence 4566666555555 8999999987 6779999999999987722211 22233444445567898887666788899999
Q ss_pred EEcCCee
Q psy2775 91 AKNREGE 97 (785)
Q Consensus 91 a~~~~~~ 97 (785)
|.+....
T Consensus 80 ~~~~~~~ 86 (89)
T PF08205_consen 80 ASHPALS 86 (89)
T ss_dssp EEETTCC
T ss_pred EECCccC
Confidence 9987643
No 294
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.11 E-value=1.9e-05 Score=64.72 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=49.5
Q ss_pred eEEEEEEEEecC---CCeeEEEECCE-----Ec---cC----------CCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 29 EVTLEVRLVAVP---EPDLLWYYNGE-----PL---QE----------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 29 ~v~l~C~~~g~p---~~~i~W~~~~~-----~~---~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
+|+|.|.....+ ...|.|+|... .+ .. .+|..+..+... ..+.|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~--~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPI--ADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCC--CceEEEEecCccccceEE
Confidence 689999986443 34799998421 11 00 134444432222 235699999999999999
Q ss_pred EEEEEc-CCeeEEEEeeEEE
Q psy2775 88 TVVAKN-REGEAKMDIPVKV 106 (785)
Q Consensus 88 ~C~a~~-~~~~~~~~~~v~v 106 (785)
.|.+.+ ..|..+..+.|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999997 5565555666655
No 295
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.10 E-value=2.1e-05 Score=69.31 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=59.3
Q ss_pred CCceEecCCCeEEEEEEEE-ecCCCeeEEEECCEEcc----CC--------CCEEEeecCCccceEEEEEEcccCCCCCe
Q psy2775 19 TKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQ----ET--------DEVVFSDQSDMHSYVSIVTIKSIKKREEG 85 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~-g~p~~~i~W~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 85 (785)
...++|.+|++|+|.|... +...+.+.|+|.+..+. .+ +++.+. ..+. ..++|+|.+++.+|+|
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~m-S~s~--~~StItIknVt~sDeG 98 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYL-SKSF--NESTILIKNVSLKDNG 98 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEe-ccCC--CcceEEEEeCChhhCe
Confidence 4568899999999999984 55567899999744221 00 122211 1111 2367999999999999
Q ss_pred EEEEEEEc-CCe-eEEEEeeEEEeC
Q psy2775 86 VYTVVAKN-REG-EAKMDIPVKVNT 108 (785)
Q Consensus 86 ~Y~C~a~~-~~~-~~~~~~~v~v~~ 108 (785)
.|.|...- ..| ..+...-|.|..
T Consensus 99 cY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 99 CYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEEEEEecCCCCCceeEEEEEEEc
Confidence 99999873 345 566666777763
No 296
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.09 E-value=1.9e-05 Score=67.22 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=51.0
Q ss_pred ecCCceEecCCCeEEEEEEEEecC------CCeeEEEECCEE------cc--CC---------CCEEEeecCCccceEEE
Q psy2775 17 KKTKPVYAEENSEVTLEVRLVAVP------EPDLLWYYNGEP------LQ--ET---------DEVVFSDQSDMHSYVSI 73 (785)
Q Consensus 17 ~~~~~~~v~~G~~v~l~C~~~g~p------~~~i~W~~~~~~------~~--~~---------~~~~~~~~~~~~~~~~~ 73 (785)
..|..+.+.+|++|+|.|...... ...+.||+.... +. .. .|+.+. ++.....+.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~--~~~~~~~~s 81 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLL--GDLGKKNCS 81 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEe--cCCCCCEEE
Confidence 357789999999999999875321 246899986421 00 00 122221 122233467
Q ss_pred EEEcccCCCCCeEEEEEEEcC
Q psy2775 74 VTIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 74 L~i~~~~~~D~G~Y~C~a~~~ 94 (785)
|+|.+++.+|+|.|.|.+...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999998764
No 297
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.08 E-value=3.2e-05 Score=63.91 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=52.7
Q ss_pred cCeEEEEEEEecCC-------CCceEEEeCC-----EEe----cCCCC--------eeEEee-----CCeEEEEEccCCC
Q psy2775 573 KGTIRLMAKVKASP-------APSIVWFRNN-----KPL----LSSPK--------KREIFD-----GENIILELKEADS 623 (785)
Q Consensus 573 g~~v~l~C~~~g~P-------~p~v~W~~~~-----~~i----~~~~~--------~~~~~~-----~~~~~L~i~~~~~ 623 (785)
|+.++|.|...-.| .+.|.|+|.. ..+ ..+.. -+..+. .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999976433 3589999841 111 01111 112221 2467899999999
Q ss_pred CCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 624 ETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 624 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 -~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 -SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred -HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999977667777777775
No 298
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.07 E-value=4.2e-05 Score=64.95 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=52.3
Q ss_pred eeeeeeeeecCeEEEEEEEe-cCCCCceEEEeCCE-----Eec---C-----------CCCeeEEee--CCeEEEEEccC
Q psy2775 564 RFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNK-----PLL---S-----------SPKKREIFD--GENIILELKEA 621 (785)
Q Consensus 564 ~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~-----~i~---~-----------~~~~~~~~~--~~~~~L~i~~~ 621 (785)
.+....+.+|+.++|.|... ......+.|++... .+. . ..+.....+ ...++|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35577899999999999999 44556899999322 111 0 111222222 23678999999
Q ss_pred CCCCCceeEEEEEEcC
Q psy2775 622 DSETDAGDYKVVATNE 637 (785)
Q Consensus 622 ~~~~d~G~Y~C~a~n~ 637 (785)
+. +|+|.|.|.+...
T Consensus 87 ~~-~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QP-SDSGTYFCQVSTS 101 (114)
T ss_dssp SG-GGEEEEEEEEEES
T ss_pred Cc-CcCEEEEEEEEEC
Confidence 99 9999999999987
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.07 E-value=3.6e-05 Score=63.09 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=49.6
Q ss_pred eEEEEEEEecCC---CCceEEEeCCE-----Eec----C-C--------CCeeEEe--eCCeEEEEEccCCCCCCceeEE
Q psy2775 575 TIRLMAKVKASP---APSIVWFRNNK-----PLL----S-S--------PKKREIF--DGENIILELKEADSETDAGDYK 631 (785)
Q Consensus 575 ~v~l~C~~~g~P---~p~v~W~~~~~-----~i~----~-~--------~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~ 631 (785)
+++|.|.....+ ...|.|+|... .+. . + +|.+... ......|+|.+++. +|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~-sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQ-ADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCcc-ccceEEE
Confidence 689999987544 23799999321 110 0 0 1212211 12356799999999 9999999
Q ss_pred EEEEc-CCcceEEEEEEEE
Q psy2775 632 VVATN-ELGSATHGARVTV 649 (785)
Q Consensus 632 C~a~n-~~g~~~~~~~l~V 649 (785)
|.+.+ ..|..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99998 7787776666665
No 300
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.04 E-value=5.1e-05 Score=61.43 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=49.5
Q ss_pred eEEEEEEEecC-CCC---ceEEEeCCE----Ee--cC---------CCCeeEEee---CCeEEEEEccCCCCCCceeEEE
Q psy2775 575 TIRLMAKVKAS-PAP---SIVWFRNNK----PL--LS---------SPKKREIFD---GENIILELKEADSETDAGDYKV 632 (785)
Q Consensus 575 ~v~l~C~~~g~-P~p---~v~W~~~~~----~i--~~---------~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C 632 (785)
.++|.|..... |.. .|.|.+... .+ -. .-+.++.+. -+..+|.|.+++. +|.|.|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~-~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLEL-EDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCcc-ccCEEEEE
Confidence 68999998843 222 599987321 11 00 000111111 1236799999999 99999999
Q ss_pred EEEc-CCcceEEEEEEEE
Q psy2775 633 VATN-ELGSATHGARVTV 649 (785)
Q Consensus 633 ~a~n-~~g~~~~~~~l~V 649 (785)
.+.| ..|..+..+.|.|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7898888888776
No 301
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.03 E-value=1.4e-05 Score=64.47 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=48.0
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 635 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 635 (785)
...|.+|++|+|.|...- +.-.+.|+|+|..............+....|.|..++. +|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCc-ccCEEEEEEEE
Confidence 457889999999998764 55689999988753210000001123456799999999 99999999975
No 302
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.01 E-value=2.3e-05 Score=65.28 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=46.2
Q ss_pred eEecCCCeEEEEEEEEec-CCCeeEEEECCEE---------c--cC-----------CCCEEEeecCCccceEEEEEEcc
Q psy2775 22 VYAEENSEVTLEVRLVAV-PEPDLLWYYNGEP---------L--QE-----------TDEVVFSDQSDMHSYVSIVTIKS 78 (785)
Q Consensus 22 ~~v~~G~~v~l~C~~~g~-p~~~i~W~~~~~~---------~--~~-----------~~~~~~~~~~~~~~~~~~L~i~~ 78 (785)
+.|++|++|+|.|.+.+. ....+.||+.... + .. ..++.+....+ .....|+|.+
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~I~~ 78 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD--SSRYRLHINR 78 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC--CCEEEEEECC
Confidence 368999999999998653 3457999985431 0 00 11222211111 1235699999
Q ss_pred cCCCCCeEEEEEEEc
Q psy2775 79 IKKREEGVYTVVAKN 93 (785)
Q Consensus 79 ~~~~D~G~Y~C~a~~ 93 (785)
++.+|+|.|.|...+
T Consensus 79 ~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 79 VKPEDSGTYFCMTVG 93 (107)
T ss_pred CCHHHCEEEEEeEcC
Confidence 999999999999864
No 303
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.00 E-value=4.2e-05 Score=62.41 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCeEEEEEEEEecCC-CeeEEEECCEE----cc---C----------CCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775 27 NSEVTLEVRLVAVPE-PDLLWYYNGEP----LQ---E----------TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88 (785)
Q Consensus 27 G~~v~l~C~~~g~p~-~~i~W~~~~~~----~~---~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 88 (785)
|++|+|.|....... ..+.|++.... +. . .++..+. .. ....+.|+|.+++.+|+|.|+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~--~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SL--GLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CC--CCCccEEEEeCCceeeeEEEE
Confidence 899999999754333 36999985321 10 0 0111111 11 112367999999999999999
Q ss_pred EEEEc-CCeeEEEEeeEEE
Q psy2775 89 VVAKN-REGEAKMDIPVKV 106 (785)
Q Consensus 89 C~a~~-~~~~~~~~~~v~v 106 (785)
|.+.. ..|.....+.|.|
T Consensus 78 C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 78 CIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEeCCCCCeeeEEEEEE
Confidence 99874 4555555666665
No 304
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.00 E-value=0.00033 Score=70.38 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=53.5
Q ss_pred EEEEccCCCCCcEEEEEEEeec--CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775 471 KLIIFSAGLEDAGEYSCRVGDT--GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548 (785)
Q Consensus 471 ~L~i~~~~~~d~G~Y~C~a~n~--g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 548 (785)
.|+|..+...++|.|+=+..+. +.......++|..- ..|.+.+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y------r~PsVsV~---------------------------- 335 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY------KRPNITVI---------------------------- 335 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe------cCCCcccc----------------------------
Confidence 5999999999999998665542 33333344443321 11222221
Q ss_pred ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC--ceEEEeCCEEecC
Q psy2775 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLS 601 (785)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~~ 601 (785)
..-+.+|+...-.|.+..+ |+- .++||+||.++..
T Consensus 336 ------------------p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 336 ------------------GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ------------------CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 3357789999999999887 544 6899999998874
No 305
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.98 E-value=0.00079 Score=66.94 Aligned_cols=168 Identities=14% Similarity=0.178 Sum_probs=94.0
Q ss_pred EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD 244 (785)
Q Consensus 165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 244 (785)
...|.|..++...+|.|+-+..+..+.......++|.-. .+|.+... .
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y------------------------------r~Psvsv~--~ 228 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF------------------------------RRPSLSIR--P 228 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe------------------------------cCCccccc--C
Confidence 346999999999999999998877765444444444422 22333322 3
Q ss_pred ceeCCCCeEEEEEEEccCCCC---eEEEEECCEEccc-ceE---EEe--C---CEEEEEEccCCCCC-CeEEEEEEEeCC
Q psy2775 245 VSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKD-RQI---TSE--K---NTHTLTLIQCSTKD-KGRYSVKVTNKE 311 (785)
Q Consensus 245 ~~~~~G~~~~l~C~~~g~p~~---~v~W~~~~~~l~~-~~~---~~~--~---~~~~l~i~~~~~~d-~G~Y~C~~~n~~ 311 (785)
..+.+|+.+.-.|.+..+.++ .+.||+||.++.. ..+ ... + ..++|++.....+. -=..+|.+.-..
T Consensus 229 ~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~r 308 (466)
T PHA03270 229 HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHR 308 (466)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEcc
Confidence 346689999999999665433 6899999998851 111 111 1 13345444432221 236899998554
Q ss_pred CceE-EEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCC
Q psy2775 312 GTVE-SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTS 369 (785)
Q Consensus 312 g~~~-~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~ 369 (785)
+... +.+.-.+ .|..+..+.-.+.+..|..+ |.+.- ....+.|+.++......
T Consensus 309 d~vS~sR~nAa~--~P~VY~~P~Isv~F~dG~AV---CtA~CVPegV~l~W~V~D~~~pa~ 364 (466)
T PHA03270 309 DSVSFSRRNATG--APTVLPRPTIEMEFGGDEAV---CTAACVPEGVTLAWLLGADPAPAE 364 (466)
T ss_pred CCccceeecccc--cCccccCCeEEEEEeCCEEE---EeccccCCCCEEEEEecCCCCCCc
Confidence 3332 1221111 12222222222334444433 55543 36699999777655443
No 306
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.98 E-value=7.2e-05 Score=60.59 Aligned_cols=75 Identities=16% Similarity=0.371 Sum_probs=49.7
Q ss_pred eEEEEEEEEec-CC---CeeEEEECCE----Ec---c----------CCCCEEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 29 EVTLEVRLVAV-PE---PDLLWYYNGE----PL---Q----------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 29 ~v~l~C~~~g~-p~---~~i~W~~~~~----~~---~----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
+|+|.|..... |. ..|.|.+... .+ . -.+|+.+.. ... ..++|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~--~daSi~i~nl~~~D~G~Y 78 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSF--EDGTISLSRLELEDEGVY 78 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCC--CcceEEEcCCccccCEEE
Confidence 68999999643 22 2699987421 11 0 012333331 111 236799999999999999
Q ss_pred EEEEEc-CCeeEEEEeeEEE
Q psy2775 88 TVVAKN-REGEAKMDIPVKV 106 (785)
Q Consensus 88 ~C~a~~-~~~~~~~~~~v~v 106 (785)
+|.+.+ ..|..+..+.|.|
T Consensus 79 ~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 79 ICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEEEeCCCCCeEEEEEEEE
Confidence 999998 6777777777776
No 307
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.95 E-value=0.00012 Score=60.63 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=33.8
Q ss_pred CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+..+|.|.+++. +|+|.|.|.+.+.......+..|.|.
T Consensus 77 g~asL~i~~v~~-sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRA-SDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEccccc-ccCEEEEEEEEECCcccEEEEEEEEE
Confidence 457899999999 99999999999988888888888776
No 308
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.94 E-value=8.6e-05 Score=56.73 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=54.4
Q ss_pred ceEecCCCeEEEEEEEEecC--CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE
Q psy2775 21 PVYAEENSEVTLEVRLVAVP--EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~ 98 (785)
.-.+..|++++|+|.....+ .+.|+|+..+...- .....++ .+|.+..+...|+|.++|.+.......
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~-----ktL~~~qv~~qdSG~WtC~V~~~~k~~ 77 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDK-----KTLNLVQLGPNDSGTWDCIVSVNSSEK 77 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCc-----cEEEeceeCcccCCEEEEEEEECceEE
Confidence 45788999999999985433 45999997554321 1111111 359999999999999999998766555
Q ss_pred EEEeeEEEe
Q psy2775 99 KMDIPVKVN 107 (785)
Q Consensus 99 ~~~~~v~v~ 107 (785)
...+.|.|.
T Consensus 78 ~~~~~V~Vl 86 (88)
T cd07694 78 TLKLDIKVL 86 (88)
T ss_pred EEEeeEEEE
Confidence 666666554
No 309
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.93 E-value=5.3e-05 Score=62.13 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=49.7
Q ss_pred eeeeecCeEEEEEEEec-CCCCceEEEeCCEE-----e--------cCCCCeeEEe--eCCeEEEEEccCCCCCCceeEE
Q psy2775 568 KTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKP-----L--------LSSPKKREIF--DGENIILELKEADSETDAGDYK 631 (785)
Q Consensus 568 ~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~-----i--------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~ 631 (785)
+.+.+|++++|.|.... .+...+.|+|.... + ....+..+.. .++.+.|+|.+++. +|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence 36789999999999875 35557999995421 1 0112333321 24567899999999 9999999
Q ss_pred EEEEcCC
Q psy2775 632 VVATNEL 638 (785)
Q Consensus 632 C~a~n~~ 638 (785)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9998753
No 310
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.92 E-value=8.2e-05 Score=59.59 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=50.7
Q ss_pred CeEEEEEEEEecC-CCeeEEEECCE----Ecc-------------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775 28 SEVTLEVRLVAVP-EPDLLWYYNGE----PLQ-------------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89 (785)
Q Consensus 28 ~~v~l~C~~~g~p-~~~i~W~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 89 (785)
++++|.|.....+ ...|.|.|... .+. -.+|..+.. .+ ...++|+|.+++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~-~~--~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN-YS--LLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC-CC--CCccEEEEeCCCccccEEEEE
Confidence 4799999986432 34789988421 111 012444431 11 123679999999999999999
Q ss_pred EEE-cCCeeEEEEeeEEE
Q psy2775 90 VAK-NREGEAKMDIPVKV 106 (785)
Q Consensus 90 ~a~-~~~~~~~~~~~v~v 106 (785)
.+. ...|+......|.|
T Consensus 78 ~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 78 KAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEeCCCCCeeEEEEEEE
Confidence 985 56777777777766
No 311
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.92 E-value=7.4e-05 Score=60.96 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=50.9
Q ss_pred cCeEEEEEEEecCCCC-ceEEEeCCE----Eec-----CC----CCe--eEE---eeCCeEEEEEccCCCCCCceeEEEE
Q psy2775 573 KGTIRLMAKVKASPAP-SIVWFRNNK----PLL-----SS----PKK--REI---FDGENIILELKEADSETDAGDYKVV 633 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p-~v~W~~~~~----~i~-----~~----~~~--~~~---~~~~~~~L~i~~~~~~~d~G~Y~C~ 633 (785)
|++++|.|........ .|.|+|... .+. .+ ..+ +.. ......+|+|.+++. +|+|.|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence 7899999997654333 699998432 110 00 000 111 123457899999999 999999999
Q ss_pred EE-cCCcceEEEEEEEE
Q psy2775 634 AT-NELGSATHGARVTV 649 (785)
Q Consensus 634 a~-n~~g~~~~~~~l~V 649 (785)
.. ...|.....+-|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 77 56787777777766
No 312
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.92 E-value=9.1e-05 Score=59.34 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=51.0
Q ss_pred CeEEEEEEEecCCCC-ceEEEeCC----EEec-----CC----CC--eeEEe---eCCeEEEEEccCCCCCCceeEEEEE
Q psy2775 574 GTIRLMAKVKASPAP-SIVWFRNN----KPLL-----SS----PK--KREIF---DGENIILELKEADSETDAGDYKVVA 634 (785)
Q Consensus 574 ~~v~l~C~~~g~P~p-~v~W~~~~----~~i~-----~~----~~--~~~~~---~~~~~~L~i~~~~~~~d~G~Y~C~a 634 (785)
+.++|.|.....+.. .|+|.|.. ..+. .+ .. .++.+ .....+|.|.+++. +|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEE
Confidence 368999998754433 79998842 1221 00 00 11112 22356899999999 9999999996
Q ss_pred -EcCCcceEEEEEEEE
Q psy2775 635 -TNELGSATHGARVTV 649 (785)
Q Consensus 635 -~n~~g~~~~~~~l~V 649 (785)
..+.|+.+.+..|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 578899998888876
No 313
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.92 E-value=9.2e-05 Score=56.59 Aligned_cols=75 Identities=11% Similarity=0.211 Sum_probs=52.9
Q ss_pred eeeeeecCeEEEEEEEecCC--CCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEE
Q psy2775 567 EKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 644 (785)
+..+..|+.++|+|.....+ .++|+|+..+...... ...+..+|.+..+.. .|+|..+|.++-+. .+..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~------~~~~~ktL~~~qv~~-qdSG~WtC~V~~~~--k~~~ 78 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI------LNQDKKTLNLVQLGP-NDSGTWDCIVSVNS--SEKT 78 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee------ccCCccEEEeceeCc-ccCCEEEEEEEECc--eEEE
Confidence 34678899999999996644 4599999855543211 123455799999999 99999999998553 3334
Q ss_pred EEEEEE
Q psy2775 645 ARVTVD 650 (785)
Q Consensus 645 ~~l~V~ 650 (785)
+.+.|.
T Consensus 79 ~~~~V~ 84 (88)
T cd07694 79 LKLDIK 84 (88)
T ss_pred EEeeEE
Confidence 444444
No 314
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.92 E-value=3.7e-05 Score=62.72 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=59.5
Q ss_pred CCeee-ecCCceEecCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeE
Q psy2775 12 PPTFS-KKTKPVYAEENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGV 86 (785)
Q Consensus 12 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 86 (785)
||.+. -.|.......++.++|.|.+.|. | ...|.|++||..+..... ......++.+...+.|++......+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 34443 34555566678899999999886 4 468899999998854311 1122335566666788887777667889
Q ss_pred EEEEEEcCCe
Q psy2775 87 YTVVAKNREG 96 (785)
Q Consensus 87 Y~C~a~~~~~ 96 (785)
|+|.|.+...
T Consensus 81 ~sC~V~H~~l 90 (100)
T cd07699 81 YTCEVTHEGL 90 (100)
T ss_pred EEEEEEecCC
Confidence 9999998654
No 315
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.90 E-value=5e-05 Score=64.53 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=51.3
Q ss_pred eeeeeeeecCeEEEEEEEecC-CCCceEEEeCC--EE---e---------cCCCCeeEEe--eCCeEEEEEccCCCCCCc
Q psy2775 565 FEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN--KP---L---------LSSPKKREIF--DGENIILELKEADSETDA 627 (785)
Q Consensus 565 ~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~--~~---i---------~~~~~~~~~~--~~~~~~L~i~~~~~~~d~ 627 (785)
+..+.+.+|++|+|.|...+. ....+.|||.. .. + ...+++.+.. ....++|+|.++.. +|+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~Ds 84 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-EDS 84 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-HHC
Confidence 346689999999999998764 45579999832 11 1 0123333332 34567899999999 999
Q ss_pred eeEEEEEEcC
Q psy2775 628 GDYKVVATNE 637 (785)
Q Consensus 628 G~Y~C~a~n~ 637 (785)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999853
No 316
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.90 E-value=9.5e-05 Score=56.24 Aligned_cols=66 Identities=30% Similarity=0.445 Sum_probs=48.7
Q ss_pred EEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 30 v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
+.|.|.+.+.+...+.|++++.......................|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999988777899999998766443322112223334455779999999999999999998765
No 317
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.90 E-value=0.00011 Score=56.41 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=48.0
Q ss_pred eEEEEEEEEec-CC-CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 29 EVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 29 ~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
.++|.|.+.|. |. ..+.|+++++.+...... .....++.....+.|.|.....++...|+|.|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999887 44 689999999875433111 112345556666788887777788899999998764
No 318
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.89 E-value=9.2e-05 Score=59.34 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=54.6
Q ss_pred cCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~ 93 (785)
+|.......++.++|.|.+.|. |. ..|+|++++..+..... ......++.+...+.|++......+...|.|.|.+
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H 84 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH 84 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence 3444443456779999999986 44 68899999998643211 11223344566677888886666677899999998
Q ss_pred CCee
Q psy2775 94 REGE 97 (785)
Q Consensus 94 ~~~~ 97 (785)
....
T Consensus 85 ~~~~ 88 (94)
T cd05847 85 QGTT 88 (94)
T ss_pred CCee
Confidence 7654
No 319
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.89 E-value=0.00011 Score=59.29 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=50.7
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVY 87 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 87 (785)
||.+...+.... |+.++|.|.+.|. |. ..++|++++..+..... -.....++.....+.|+|.. +|.+.|
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~y 75 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARY 75 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEE
Confidence 566654443332 7889999999997 44 48999999964332211 12223344444456676655 388999
Q ss_pred EEEEEcCCe
Q psy2775 88 TVVAKNREG 96 (785)
Q Consensus 88 ~C~a~~~~~ 96 (785)
+|.+.+...
T Consensus 76 tC~V~H~~~ 84 (93)
T cd07698 76 SCRVEHSGL 84 (93)
T ss_pred EEEEEeCCC
Confidence 999998654
No 320
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.89 E-value=0.00012 Score=60.74 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=46.8
Q ss_pred eeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCeeEEeeCC------eEEEEEccCCCCCCcee-EEEEEEcCCc
Q psy2775 569 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGD-YKVVATNELG 639 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~-Y~C~a~n~~g 639 (785)
....|+.++|.|.+.|+ |+ ..++|+|||+++..... ....+++ .+.|.+.. .. .|.|. |+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~-~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TE-DDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-cc-ccccCceEEEEEeCCC
Confidence 45578889999999986 75 58999999999864322 2222221 23455554 33 45554 9999999764
Q ss_pred ce
Q psy2775 640 SA 641 (785)
Q Consensus 640 ~~ 641 (785)
..
T Consensus 94 ~~ 95 (111)
T cd05772 94 QA 95 (111)
T ss_pred CC
Confidence 43
No 321
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.86 E-value=4.8e-05 Score=61.23 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=53.2
Q ss_pred cCCceEecCCCeEEEEEEEEec--CC-CeeEEEECCEEc-cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEc
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAV--PE-PDLLWYYNGEPL-QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~--p~-~~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~ 93 (785)
+|....+..|+.++|.|.+.|. |+ ..++|++++... ...........++.+...+.|.+..-...+.-.|.|.+.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 4555567789999999999998 43 578999987432 2211122333444555567788876555556689999998
Q ss_pred CCe
Q psy2775 94 REG 96 (785)
Q Consensus 94 ~~~ 96 (785)
...
T Consensus 85 ~~l 87 (96)
T cd07696 85 PDL 87 (96)
T ss_pred CCC
Confidence 764
No 322
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.86 E-value=6.4e-05 Score=61.46 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=53.8
Q ss_pred eecCCceEecCCCeEEEEEEEEecCC--CeeEEEECCEEccCCCCE--EEeec---CCccceEEEEEEcccCCCCCeEEE
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQETDEV--VFSDQ---SDMHSYVSIVTIKSIKKREEGVYT 88 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~~~~~~~~~~~--~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~ 88 (785)
.-+|....+..|+.++|.|.+.|..+ ..+.|++++..+...... ....+ ++.+...+.|.|..-...+...|+
T Consensus 5 l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt 84 (102)
T cd05768 5 VLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT 84 (102)
T ss_pred EeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence 33445555566889999999999743 467999999987543211 11111 344555677888655445667899
Q ss_pred EEEEcCCe
Q psy2775 89 VVAKNREG 96 (785)
Q Consensus 89 C~a~~~~~ 96 (785)
|.|.+...
T Consensus 85 C~V~H~~l 92 (102)
T cd05768 85 CVVGHEAL 92 (102)
T ss_pred EEeEeCCC
Confidence 99998654
No 323
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.86 E-value=7e-05 Score=63.35 Aligned_cols=75 Identities=8% Similarity=0.189 Sum_probs=49.7
Q ss_pred ecCCceEecCCCeEEEEEEEEecC--CCeeEEEECCE---E--c---cC-----------CCCEEEeecCCccceEEEEE
Q psy2775 17 KKTKPVYAEENSEVTLEVRLVAVP--EPDLLWYYNGE---P--L---QE-----------TDEVVFSDQSDMHSYVSIVT 75 (785)
Q Consensus 17 ~~~~~~~v~~G~~v~l~C~~~g~p--~~~i~W~~~~~---~--~---~~-----------~~~~~~~~~~~~~~~~~~L~ 75 (785)
..|....+.+|++|+|.|...+.. ...+.||+... + | .. .+++....+.. .....|+
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~ 79 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTS--KSTVYLQ 79 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEcc--CCEEEEE
Confidence 357788999999999999976432 35699998532 1 1 00 01222211111 1224699
Q ss_pred EcccCCCCCeEEEEEEEc
Q psy2775 76 IKSIKKREEGVYTVVAKN 93 (785)
Q Consensus 76 i~~~~~~D~G~Y~C~a~~ 93 (785)
|.+++.+|+|.|.|.+..
T Consensus 80 I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 80 LNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ECCCCHHHCEEEEEEEEc
Confidence 999999999999999875
No 324
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.86 E-value=4.5e-05 Score=63.01 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=45.4
Q ss_pred EecCCCeEEEEEEEEecCCCeeEEEECCEE-------c---cCCCC----------EEEeecCCccceEEEEEEcccCCC
Q psy2775 23 YAEENSEVTLEVRLVAVPEPDLLWYYNGEP-------L---QETDE----------VVFSDQSDMHSYVSIVTIKSIKKR 82 (785)
Q Consensus 23 ~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~-------~---~~~~~----------~~~~~~~~~~~~~~~L~i~~~~~~ 82 (785)
.+++|++|+|.|.+.......+.||+.... | ..... .++..... .....|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS--SNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec--CCEEEEEECCCCHH
Confidence 478999999999986554567999986421 1 00000 11111111 12356999999999
Q ss_pred CCeEEEEEEEc
Q psy2775 83 EEGVYTVVAKN 93 (785)
Q Consensus 83 D~G~Y~C~a~~ 93 (785)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999864
No 325
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.85 E-value=0.0037 Score=61.80 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=102.1
Q ss_pred CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEE--------------CCEEc-----------------------
Q psy2775 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY--------------NGEPL----------------------- 53 (785)
Q Consensus 11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~--------------~~~~~----------------------- 53 (785)
.-|.|.-....+.|..+++-.|.|+..-.|+..-.|-. |.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
T PHA03271 93 KMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRPSE 172 (490)
T ss_pred cCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCHHH
Confidence 34666667778889999999999998777776666631 11100
Q ss_pred ------------------cCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeE--EEEeeEEEeCCCCCC
Q psy2775 54 ------------------QETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA--KMDIPVKVNTGKPEK 113 (785)
Q Consensus 54 ------------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~--~~~~~v~v~~~~~~~ 113 (785)
..++++-+......+. -.|.|.++...|+|.|+-...+..... .....+.+.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~--m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---RP 247 (490)
T PHA03271 173 LISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNT--MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---RP 247 (490)
T ss_pred HhHHhhcCCCCccccCCCCCCceeEEeeccccce--eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe---cC
Confidence 0111222323332333 349999999999997765555433322 2333344442 45
Q ss_pred CceecCCCceEeccCCcEEEEEEEeccCCC---eEEEeECCEEcccceEE------EeC-----CEEEEEEcccCCCCcE
Q psy2775 114 PSILEPLHDVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKDRQIT------SEK-----NTHTLTLIQCSTKDKG 179 (785)
Q Consensus 114 p~i~~~~~~~~~~~G~~v~l~C~~~g~p~~---~v~W~~~g~~~~~~~~~------~~~-----~~~~L~i~~~~~~d~G 179 (785)
|.+...+ ..+..|+...-.|.+..+-++ .++||+||.++...... .++ ..++|.+.+...+.--
T Consensus 248 PsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PP 325 (490)
T PHA03271 248 ASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPP 325 (490)
T ss_pred CCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCC
Confidence 5554433 346789999999999775443 79999999887543211 111 1234444443323334
Q ss_pred EEEEEEEcCCe
Q psy2775 180 RYSVKVTNKEG 190 (785)
Q Consensus 180 ~Y~C~a~n~~g 190 (785)
..+|.+.-..+
T Consensus 326 sLRCeV~W~rd 336 (490)
T PHA03271 326 KISCLVAWKQG 336 (490)
T ss_pred CceEEEEEccC
Confidence 78999875444
No 326
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.85 E-value=0.00012 Score=64.55 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=62.6
Q ss_pred CeEEecCCcEEEEEEEe-C-CCceEEEEECCEEc----------cc--CCCEE-EEEeCcEEEEEEccCCCCCcEEEEEE
Q psy2775 424 DVKVSRDEKASFEIELT-K-GDALVKWYKDGKEI----------AF--SENVT-LSIDGKKQKLIIFSAGLEDAGEYSCR 488 (785)
Q Consensus 424 ~~~v~~g~~~~l~C~~~-~-~~~~i~W~~~~~~~----------~~--~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~ 488 (785)
.+.+.+|++++|.|... + ..+.+.|+|..+.+ .. .++.. ++..-..+.|+|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45688999999999985 4 46789999964322 11 12343 23333467899999999999999999
Q ss_pred Eeec--C-cceeEEEEEEEcCc
Q psy2775 489 VGDT--G-DKESKATLTVEAPA 507 (785)
Q Consensus 489 a~n~--g-~~~~~~~l~V~~~~ 507 (785)
..-- | ..+..+-|+|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 9863 6 77888999998764
No 327
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.84 E-value=7.9e-05 Score=56.70 Aligned_cols=63 Identities=30% Similarity=0.518 Sum_probs=47.8
Q ss_pred EEEEEEEecCCCCceEEEeCCEEecCCCCe----eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 576 IRLMAKVKASPAPSIVWFRNNKPLLSSPKK----REIFDGENIILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 576 v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~----~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
++|.|.+.+.|.+.+.|++++......... ..........|.|.++.. +|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCcC
Confidence 479999999777899999988776443211 111234556799999998 999999999998763
No 328
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.83 E-value=5.8e-05 Score=62.88 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=46.8
Q ss_pred eeeecCeEEEEEEEecCC-CCceEEEeCCEE---------e--cC-----------CCCeeEE--eeCCeEEEEEccCCC
Q psy2775 569 TVKEKGTIRLMAKVKASP-APSIVWFRNNKP---------L--LS-----------SPKKREI--FDGENIILELKEADS 623 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~---------i--~~-----------~~~~~~~--~~~~~~~L~i~~~~~ 623 (785)
.+.+|++++|.|.+.+.. ...+.|||.... + .. ..++... ..+..+.|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 478899999999998753 447999984321 0 00 1233221 223457899999999
Q ss_pred CCCceeEEEEEEc
Q psy2775 624 ETDAGDYKVVATN 636 (785)
Q Consensus 624 ~~d~G~Y~C~a~n 636 (785)
+|+|.|.|...+
T Consensus 82 -~Dsg~YyCa~~~ 93 (107)
T cd07700 82 -EDSGTYFCMTVG 93 (107)
T ss_pred -HHCEEEEEeEcC
Confidence 999999999864
No 329
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.81 E-value=0.00011 Score=56.51 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=42.1
Q ss_pred eEEEEEEEecC-CC-CceEEEeCCEEecCCCCee-EEee-CCe----EEEEEccCCCCCCceeEEEEEEcCC
Q psy2775 575 TIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EIFD-GEN----IILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 575 ~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~~-~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
+++|.|.+.|+ |+ ..++|+|||+++..+.... ...+ ++. +.|.|..... ++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence 47899999997 66 5899999999754432211 1221 222 3466655555 67788999998764
No 330
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.80 E-value=0.00016 Score=57.59 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCee-EEee-CCeEE-EEEccCCCCCCceeEEEEEEcCCc
Q psy2775 570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR-EIFD-GENII-LELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~-~~~~-~~~~~-L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
+..|...+|.|.|.|+ |+. .++|+|||+++. +.... ...+ ++.+. ...-.+.. .+...|+|.+.....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~~l 84 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHNSM 84 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEECCC
Confidence 3457778999999996 654 899999999986 43222 2222 22221 11223345 677889999998643
No 331
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.78 E-value=0.00014 Score=60.51 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=59.9
Q ss_pred CCeee-ecCCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC---EEEeecCCccceEEEEEEcccCCCC-C
Q psy2775 12 PPTFS-KKTKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE---VVFSDQSDMHSYVSIVTIKSIKKRE-E 84 (785)
Q Consensus 12 ~p~~~-~~~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~i~~~~~~D-~ 84 (785)
||.+. -.|....+.+++.++|.|.+.|+ |. ..+.|++|+..+..... ......++.+...+.|+|...+..| .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 34443 34555666678889999999887 44 58899999998765422 1222222455566788888665544 6
Q ss_pred eEEEEEEEcCCeeEEE
Q psy2775 85 GVYTVVAKNREGEAKM 100 (785)
Q Consensus 85 G~Y~C~a~~~~~~~~~ 100 (785)
..|+|.+.+.......
T Consensus 82 ~~ytC~V~H~g~~~~~ 97 (115)
T cd05769 82 NTFTCIVQFYGGTDTD 97 (115)
T ss_pred CeEEEEEEEeCCccce
Confidence 7999999987654443
No 332
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.78 E-value=0.0017 Score=65.34 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=54.4
Q ss_pred EEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeeccccc
Q psy2775 470 QKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548 (785)
Q Consensus 470 ~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 548 (785)
..|+|..++...+|.|+=...+. +.......++|.-- ..|.+.+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y------r~Psvsv~---------------------------- 243 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY------NAPLVDLS---------------------------- 243 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe------cCCccccc----------------------------
Confidence 45999999999999998665454 43344444444221 11222221
Q ss_pred ccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEEEecC-CCC--ceEEEeCCEEec
Q psy2775 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLL 600 (785)
Q Consensus 549 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~g~-P~p--~v~W~~~~~~i~ 600 (785)
...+.+|+...-.|.+..+ |+- .+.||+||.++.
T Consensus 244 ------------------~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 244 ------------------VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred ------------------CCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 3357789999999999886 544 699999999987
No 333
>KOG0613|consensus
Probab=97.78 E-value=0.00016 Score=81.82 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=142.0
Q ss_pred ccCCCeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-Cccee
Q psy2775 420 VPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKES 497 (785)
Q Consensus 420 ~~~~~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~ 497 (785)
..+..-....+....|.|.+.. ..+.+.|+.+.-..... ..+...+.+.+....+.+.|+|...+. +....
T Consensus 234 ~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~ 306 (1205)
T KOG0613|consen 234 SAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRF 306 (1205)
T ss_pred CccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccce
Confidence 3344444567888889999987 35666676654332211 112236778888888899999999886 33333
Q ss_pred EEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEE
Q psy2775 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR 577 (785)
Q Consensus 498 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 577 (785)
.+.-.+...... ..|... ....+ ..-..|.+......+....+..++
T Consensus 307 ~v~~~~~i~~~~---~~p~~~----------~~aaa--------------------~~~~~~v~~~~~~~v~a~d~~~v~ 353 (1205)
T KOG0613|consen 307 KVTEEAPIGKGK---PGPESL----------QAAAA--------------------RPPEVPVGLVRNLSVTARDNTLVE 353 (1205)
T ss_pred eeeEEeeccccc---cCchhh----------hhhcc--------------------CCccccccccccceeccccCccee
Confidence 333332221100 000000 00000 000123344444566778889999
Q ss_pred EEEEEecCCCCc-eEEEeCCEEecCCCCeeEEe--eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeecc
Q psy2775 578 LMAKVKASPAPS-IVWFRNNKPLLSSPKKREIF--DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 654 (785)
Q Consensus 578 l~C~~~g~P~p~-v~W~~~~~~i~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 654 (785)
+.|...|.+.|. +.||+++.....+....+.+ ......+.|..+.. .+.+.|.|.|.|..|.........|.....
T Consensus 354 m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~ 432 (1205)
T KOG0613|consen 354 MPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTEQTIAESTVSEEMP 432 (1205)
T ss_pred ecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcccccchhhcccccC
Confidence 999999999885 99999887765544322222 23345688999998 999999999999999877666655553221
Q ss_pred CCCCCccccccccccccccccCCCcceeeeeecCccccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECC
Q psy2775 655 GRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNG 732 (785)
Q Consensus 655 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~ 732 (785)
+ ..++.+............-+.+.+.|...++|.| .++|++++
T Consensus 433 g-----------------------------------t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~ 477 (1205)
T KOG0613|consen 433 G-----------------------------------TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG 477 (1205)
T ss_pred C-----------------------------------CCCccccccccccccccCCcccccccCCCCccccceeEeeccCC
Confidence 1 1223332211111223334789999999998866 34456555
Q ss_pred EE
Q psy2775 733 TV 734 (785)
Q Consensus 733 ~~ 734 (785)
-.
T Consensus 478 ~~ 479 (1205)
T KOG0613|consen 478 LP 479 (1205)
T ss_pred cc
Confidence 43
No 334
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.77 E-value=7.9e-05 Score=61.58 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=47.1
Q ss_pred eeeecCeEEEEEEEecCCCCceEEEeCCEE-------ec---C------------CCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKP-------LL---S------------SPKKREIFDGENIILELKEADSETD 626 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-------i~---~------------~~~~~~~~~~~~~~L~i~~~~~~~d 626 (785)
.+.+|++|+|.|.+.+.-...+.|||.... |. . ..++..........|+|.+++. +|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK-EN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH-HH
Confidence 467899999999987654557999994321 10 0 1112222334667899999999 99
Q ss_pred ceeEEEEEEc
Q psy2775 627 AGDYKVVATN 636 (785)
Q Consensus 627 ~G~Y~C~a~n 636 (785)
+|+|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999999864
No 335
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.77 E-value=0.0021 Score=64.71 Aligned_cols=162 Identities=16% Similarity=0.213 Sum_probs=93.5
Q ss_pred EEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCcc
Q psy2775 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245 (785)
Q Consensus 166 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 245 (785)
..|+|..++..++|.|+-+..+..+.......++|.-. .+|.+... ..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y------------------------------r~Psvsv~--~~ 245 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY------------------------------NAPLVDLS--VH 245 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe------------------------------cCCccccc--CC
Confidence 46999999999999999887676665555556666422 22333222 33
Q ss_pred eeCCCCeEEEEEEEccCCCC---eEEEEECCEEcc-cceE----E-Ee----CCEEEEEEccCCC-CCCeEEEEEEEeCC
Q psy2775 246 SITEGESAVLSVQVGGEPSP---KVEWYKDGKLIK-DRQI----T-SE----KNTHTLTLIQCST-KDKGRYSVKVTNKE 311 (785)
Q Consensus 246 ~~~~G~~~~l~C~~~g~p~~---~v~W~~~~~~l~-~~~~----~-~~----~~~~~l~i~~~~~-~d~G~Y~C~~~n~~ 311 (785)
.+.+|+...-.|.+..+-++ .+.|++||.++. ...+ . .. ...++|++..... +.-=..+|.+.-..
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 46789999999999665433 789999999887 2211 1 11 1234555555322 33456899998554
Q ss_pred CceEEEEEEEEeccccceeeeccceeEeeCccEEEEEEEcC-C--CCeEEEEECC
Q psy2775 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS-D--KADVKWFKDG 363 (785)
Q Consensus 312 g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~--~~~v~W~~~~ 363 (785)
+..+ ..++.-...|..+..+.-.+.+..|.. .|.+.- | ...+.|+.++
T Consensus 326 d~vS-~~RfsAt~~P~Vy~~P~Is~~F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 326 DEVS-FARIAKAGTPSVFVAPTVSVTVEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred CCcc-eeeccccccCccccCCeEEEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence 4332 111111111222222222333444443 366554 2 5789998766
No 336
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.77 E-value=0.0063 Score=60.24 Aligned_cols=201 Identities=18% Similarity=0.218 Sum_probs=120.1
Q ss_pred EEEEcCCCCCCceEEEEEEecc------ceEEEEEEEecCCcccccCCCeEEecCCcEEEEEEEeC--C--CceEEEEEC
Q psy2775 382 KLLIRNISVHDEGEYTCSLPDQ------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK--G--DALVKWYKD 451 (785)
Q Consensus 382 ~l~i~~~~~~d~G~Y~C~a~n~------~~~~~~~v~~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~--~~~i~W~~~ 451 (785)
.|.|.++...++|.|.-...+. .....+.+...||.+...+. .+..|+...-.|.+.. | ...++|+.|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4899999999999665444432 22334445566776665443 3678999999999987 2 335999999
Q ss_pred CEEcccCCCEEEE---E---eCc--EEEEEEccCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEec
Q psy2775 452 GKEIAFSENVTLS---I---DGK--KQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPH 522 (785)
Q Consensus 452 ~~~~~~~~~~~~~---~---~~~--~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 522 (785)
|.++......... . ++. .++|++.+...+..-..+|.+.=. +...... ...........|.+.+.-+
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r----nAaatP~VY~~P~ISv~Fe 361 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT----NATAIPTVYHHPRISLAFK 361 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee----ecccCCccccCCeEEEEEe
Confidence 9987554322111 1 122 334444443333334799998743 2122221 2222223445678888878
Q ss_pred cCceeEEEEecCCceeeEEeecccccccCC-----CCC-CCCCeEeeeeeeeeee-ecCeEEEEEEEecCCCC
Q psy2775 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPL-----GSP-GQAPLFIERFEEKTVK-EKGTIRLMAKVKASPAP 588 (785)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-----~~~-~~~p~~~~~~~~~~v~-~g~~v~l~C~~~g~P~p 588 (785)
++.+..+...-.+.+.++|..++....-.. ... ...|.+....+...+. .+++++-+|...|+|.+
T Consensus 362 dG~AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~GYP~~ 434 (490)
T PHA03271 362 DGYAICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIGYPFD 434 (490)
T ss_pred CCEEEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEeecCCC
Confidence 887776666656799999997775421111 111 1124444333333343 45789999999999875
No 337
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.75 E-value=0.00013 Score=58.50 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=44.2
Q ss_pred cCeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeEEe-eCC----eEEEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 573 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF-DGE----NIILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 573 g~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~-~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
|+.+.|+|.+ .|+|+|.|+|+.++..+.......... .++ .++|.+..-.. ++...++|.|.|.....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~-~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTRE-DHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGG-GTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChH-HCCeEEEEEEECCccCC
Confidence 6799999976 567999999999998872111111111 111 24577765444 56777999999986544
No 338
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.74 E-value=0.0002 Score=57.72 Aligned_cols=66 Identities=12% Similarity=0.243 Sum_probs=42.6
Q ss_pred cCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEee-CCeE-EEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 573 KGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFD-GENI-ILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 573 g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~-~~~~-~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
|+.++|.|.+.|+ |++ .++|+++|+.+..+... ....+ ++.+ ......+.. .+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence 7889999999996 665 89999999744333211 12222 2222 222333445 678999999998754
No 339
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.71 E-value=0.00014 Score=58.33 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=45.2
Q ss_pred ecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCC-ee-EEeeCCe----EEEEEccCCCCCCceeEEEEEEcCCcceEE
Q psy2775 572 EKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK-KR-EIFDGEN----IILELKEADSETDAGDYKVVATNELGSATH 643 (785)
Q Consensus 572 ~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~-~~-~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~ 643 (785)
.++.++|.|.|.|+ |. ..|+|+|||+.+..+.. .. ....++. +.|.+..-.- .+...|+|.+.+...+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w-~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW-KSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHh-cCCCeEEEEEEECCeeeee
Confidence 45679999999996 76 48999999998743321 11 1122333 2455543322 3567899999998665443
No 340
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.70 E-value=0.0046 Score=62.47 Aligned_cols=202 Identities=17% Similarity=0.167 Sum_probs=112.1
Q ss_pred EEEcCCCCCCceEEEEEEeccc-----eEEEEEEE-ecCCcccccCCCeEEecCCcEEEEEEEeC--C--CceEEEEECC
Q psy2775 383 LLIRNISVHDEGEYTCSLPDQE-----TSAELNVV-ELPPEISVPLQDVKVSRDEKASFEIELTK--G--DALVKWYKDG 452 (785)
Q Consensus 383 l~i~~~~~~d~G~Y~C~a~n~~-----~~~~~~v~-~~~~~~~~~~~~~~v~~g~~~~l~C~~~~--~--~~~i~W~~~~ 452 (785)
|.|.+++..++|.|+-...+.. .+..+.|. ..+|.+.. ....+.+|+...-.|.+.. | ...++|+.|+
T Consensus 291 L~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV--~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng 368 (566)
T PHA03269 291 LHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV--IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNF 368 (566)
T ss_pred eEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc--cCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 9999999999999987765321 22333332 23444433 3334779999999999987 2 3369999999
Q ss_pred EEcccCC---CEEEEEeCc---EEEEEEccCCCCC--cEEEEEEEeecCcceeEEEEEEEcCcccccccCCCeeEEeccC
Q psy2775 453 KEIAFSE---NVTLSIDGK---KQKLIIFSAGLED--AGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524 (785)
Q Consensus 453 ~~~~~~~---~~~~~~~~~---~~~L~i~~~~~~d--~G~Y~C~a~n~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~ 524 (785)
.++.... ......+|. .++|++......| --..+|.+.=.....+...+.-.+. ......|.+.+.-+++
T Consensus 369 ~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaat--P~VY~~PtISm~FedG 446 (566)
T PHA03269 369 GNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVT--PDVYPFPNVSIEIIDG 446 (566)
T ss_pred cccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccC--CccccCCeEEEEEeCC
Confidence 8886421 222233342 3445442222222 3457999873211111111111111 1223456777776677
Q ss_pred ceeEEEEecC-CceeeEEeeccccccc----CCCCCCCCCeEeeeeeeeeee-ecCeEEEEEEEecCCCC
Q psy2775 525 DATFQVELSS-PDIQVKWLNLFIVPTC----PLGSPGQAPLFIERFEEKTVK-EKGTIRLMAKVKASPAP 588 (785)
Q Consensus 525 ~~~~~~~~~~-~~~~~~W~~~~~~~~~----~~~~~~~~p~~~~~~~~~~v~-~g~~v~l~C~~~g~P~p 588 (785)
.+..+...-. ..+.++|..++....- ..+.-...|.+....+..-+. .++.++-+|...|+|..
T Consensus 447 ~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~GYP~~ 516 (566)
T PHA03269 447 HIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDGYPKK 516 (566)
T ss_pred EEEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEeecCCC
Confidence 6665555433 4569999977754110 000001123343322222222 23689999999999875
No 341
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.69 E-value=8.8e-05 Score=60.53 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=45.9
Q ss_pred eeeecCeEEEEEEEecC-CC-CceEEEeCCEEecCCCCe-eEEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 569 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK-REIFD-GEN----IILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~i~~~~~~-~~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
....++.++|.|.+.|+ |. ..|+|++||+++..+... ....+ ++. +.|.+..-.. ++...|+|.+.+....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~~sC~V~H~~l~ 91 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW-NKHKVYTCEVTHEGLS 91 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEecCCC
Confidence 34467889999999995 74 489999999998543211 11222 332 2455544333 3467799999987543
No 342
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.68 E-value=0.00037 Score=55.79 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=42.8
Q ss_pred eecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEee-CCe----EEEEEccCCCCCCceeEEEEEEcCCc
Q psy2775 571 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFD-GEN----IILELKEADSETDAGDYKVVATNELG 639 (785)
Q Consensus 571 ~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~-~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~g 639 (785)
..|+..+|.|.|.|+ |.. .++|+|||.++..+... ....+ ++. ..|.+. . ++...|+|.+.....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~-~~~~~ytC~V~H~~l 85 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---P-EEGDIYSCIVEHWGL 85 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---C-CCCCeEEEEEEeCCC
Confidence 446778999999996 764 89999999998654221 11222 222 234443 3 556689999998643
No 343
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.68 E-value=0.00017 Score=56.78 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCEE--EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 26 ENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEVV--FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 26 ~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
.++.++|.|.+.|. |. ..|.|++++..+....... ....++.+...+.|.+. ..+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 38999999999886 43 4799999999886654332 22456666667778887 5566699999998754
No 344
>KOG1480|consensus
Probab=97.68 E-value=1.2e-05 Score=84.87 Aligned_cols=186 Identities=20% Similarity=0.301 Sum_probs=109.5
Q ss_pred CCCeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCc---cceEEEEEEcccCCCCCe--
Q psy2775 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM---HSYVSIVTIKSIKKREEG-- 85 (785)
Q Consensus 11 ~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~D~G-- 85 (785)
.-|.|+..|.+..+..|.++.|.|.+. |.+.|...-+...+..+....+...+.. ........|...+.++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~ 100 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKAN--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP 100 (909)
T ss_pred CcceeeecCCccceecCCCccceecCC--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence 558999999999999999999999974 3333432223322222222222111110 000111233333333322
Q ss_pred -EEE--EEEEcCCeeEEEE-eeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE-eccCCCeEEEeECCEEcccceEE
Q psy2775 86 -VYT--VVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQIT 160 (785)
Q Consensus 86 -~Y~--C~a~~~~~~~~~~-~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~ 160 (785)
.|. |.|....|..... ..+++.. ..-.+...+.-..+..+..+.+.|.. .+.|...++|++++..+....-.
T Consensus 101 ~d~~cQc~a~~~~g~~~s~~a~vr~ay---~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~ 177 (909)
T KOG1480|consen 101 EDYWCQCVAWSDDGTVKSRKATVRIAY---LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV 177 (909)
T ss_pred cceeeeeeeecCCCcchhhhHHHHHHH---HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccc
Confidence 454 5566655532221 1112111 11223344556678888999999987 57788899999999887764222
Q ss_pred EeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEE-EEEEEee
Q psy2775 161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVD 201 (785)
Q Consensus 161 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~ 201 (785)
.......|++..++..|.|+|+|+|.|..+.... .+.+.|.
T Consensus 178 ~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 178 IRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 2233456899999999999999999998875443 2444443
No 345
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.67 E-value=0.00044 Score=55.57 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=45.3
Q ss_pred eeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCC-eeEEeeCC-eE-EEEEccCCCCCCceeEEEEEEcCCcc
Q psy2775 570 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK-KREIFDGE-NI-ILELKEADSETDAGDYKVVATNELGS 640 (785)
Q Consensus 570 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~-~~~~~~~~-~~-~L~i~~~~~~~d~G~Y~C~a~n~~g~ 640 (785)
+..|+.++|.|.+.|+ |.. .++|+|||+++..+.. .....+++ .+ +...-.+.. .+...|+|.+......
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCCCC
Confidence 3468999999999996 665 8999999999866421 11222221 21 112223344 5667899999987653
No 346
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.62 E-value=0.00082 Score=53.80 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=47.1
Q ss_pred cCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE--EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 25 EENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV--VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 25 ~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
..|+.++|.|.+.|+ |. ..++|.+||..+...... ...+.++.+...+.|++.. ++...|+|.+.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l 85 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL 85 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence 346778999999997 43 678999999987553211 1223344555556677754 456699999998653
No 347
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.62 E-value=0.00017 Score=57.82 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCeeeecCCceEecCCCeEEEEEEEEecC---CCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88 (785)
Q Consensus 12 ~p~~~~~~~~~~v~~G~~v~l~C~~~g~p---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 88 (785)
|-.+..+|.......+..++|.|.+.|.- ...|.|.+++.. ...........++.+...+.|+|..-.-.-...|+
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 33344456666666899999999999864 367999999875 11111122334556666788888754444445799
Q ss_pred EEEEcCCe
Q psy2775 89 VVAKNREG 96 (785)
Q Consensus 89 C~a~~~~~ 96 (785)
|.|.+...
T Consensus 83 C~V~H~~l 90 (99)
T cd04986 83 CTVTHPEG 90 (99)
T ss_pred EEEECCCc
Confidence 99998764
No 348
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.62 E-value=0.00057 Score=54.96 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=47.6
Q ss_pred cCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCC--CEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 25 EENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETD--EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 25 ~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
..|+.++|.|.+.|. |. ..+.|++++..+.... .-...+.++.+...+.|.+.. .+...|.|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence 468999999999986 43 4789999999876541 112223333444456666643 4667999999987643
No 349
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.57 E-value=0.1 Score=51.75 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=72.9
Q ss_pred CcceeCCCCeEEEEEEEcc--CC-CCeEEEEECCEEcc--------------------cceEE------EeCCEEEEEEc
Q psy2775 243 HDVSITEGESAVLSVQVGG--EP-SPKVEWYKDGKLIK--------------------DRQIT------SEKNTHTLTLI 293 (785)
Q Consensus 243 ~~~~~~~G~~~~l~C~~~g--~p-~~~v~W~~~~~~l~--------------------~~~~~------~~~~~~~l~i~ 293 (785)
....+..|..+.|.|..+- +. -..++|+-.|-++. +..+. ..-..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3456667999999998753 33 34688986543332 11111 12235689999
Q ss_pred cCCCCCCeEEEEEEEeCCCceEEEEEEEEeccccceeeeccceeEeeCcc-EEEEEEEcC---CCCeEEEEECCEEcC
Q psy2775 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN-AVLEVEVTS---DKADVKWFKDGQEIK 367 (785)
Q Consensus 294 ~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~---~~~~v~W~~~~~~l~ 367 (785)
.+.....|-|+|+|....-......-|.|... .+. ....+|.. ....|-+.. .++.+.|.-+|....
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~--V~f-----~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH--VFF-----KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccE--EEE-----EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999999987544444444544421 111 12234333 345687754 367899998886543
No 350
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.56 E-value=0.00068 Score=54.40 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=46.4
Q ss_pred CeEEEEEEEEec-CCCeeEEEECCE----Ec-----------cC--CCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775 28 SEVTLEVRLVAV-PEPDLLWYYNGE----PL-----------QE--TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89 (785)
Q Consensus 28 ~~v~l~C~~~g~-p~~~i~W~~~~~----~~-----------~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 89 (785)
++++|.|..... ....+.|.|... .+ .. .+|+.+..... ..++|+|.+++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~---~d~sI~i~nvt~~D~G~Y~C 77 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTR---EDMSLSFNNATEEDVGLYCC 77 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCC---CccEEEEcCCCcccCEEEEE
Confidence 468999998432 335678998532 11 00 12334432221 23679999999999999999
Q ss_pred EEEc-CCeeEEEEeeE
Q psy2775 90 VAKN-REGEAKMDIPV 104 (785)
Q Consensus 90 ~a~~-~~~~~~~~~~v 104 (785)
.+.. ..|.....+.|
T Consensus 78 ~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 78 SLVTYPQGSWEKVIEV 93 (96)
T ss_pred EEEeCCCCCeEEEEEE
Confidence 9974 45555555443
No 351
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.53 E-value=0.00023 Score=58.17 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=43.9
Q ss_pred eeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe--eEEee---CCe----EEEEEccCCCCCCceeEEEEEEcC
Q psy2775 569 TVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIFD---GEN----IILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~--~~~~~---~~~----~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
.+..|..++|.|.|.|+ |.. .++|+|||+++...... ....+ ++. +.|.+..-.. .+...|+|.+...
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w-~~~~~ytC~V~H~ 90 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDW-NAGDVFTCVVGHE 90 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHh-cCCCcEEEEeEeC
Confidence 34457899999999996 654 78999999987543211 11111 122 2455533222 3456799999986
Q ss_pred Cc
Q psy2775 638 LG 639 (785)
Q Consensus 638 ~g 639 (785)
..
T Consensus 91 ~l 92 (102)
T cd05768 91 AL 92 (102)
T ss_pred CC
Confidence 54
No 352
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.52 E-value=0.00047 Score=58.70 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=48.2
Q ss_pred eeeeeeecCeEEEEEEEecCC------CCceEEEeCCEE------ec--C---------CCCeeEE--eeCCeEEEEEcc
Q psy2775 566 EEKTVKEKGTIRLMAKVKASP------APSIVWFRNNKP------LL--S---------SPKKREI--FDGENIILELKE 620 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P------~p~v~W~~~~~~------i~--~---------~~~~~~~--~~~~~~~L~i~~ 620 (785)
+.+.+.+|+.|+|.|.....+ ...+.|||.... +. . ..|+... ...+...|+|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 466899999999999876322 236899985321 10 0 0122221 134457899999
Q ss_pred CCCCCCceeEEEEEEcC
Q psy2775 621 ADSETDAGDYKVVATNE 637 (785)
Q Consensus 621 ~~~~~d~G~Y~C~a~n~ 637 (785)
++. +|+|.|.|.+...
T Consensus 87 l~~-~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQP-EDSGKYFFRVELG 102 (119)
T ss_pred CCh-hhCeEEEEEEEcC
Confidence 999 9999999998764
No 353
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.52 E-value=0.00051 Score=54.05 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=46.7
Q ss_pred ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCeeEEe--eCCeE----EEEEccCCCCCCceeEEEEEEcCCcce
Q psy2775 572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIF--DGENI----ILELKEADSETDAGDYKVVATNELGSA 641 (785)
Q Consensus 572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~~~~~--~~~~~----~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 641 (785)
.++.++|.|.+.|+ |.. .|.|+++|..+.......... .++.+ .|.+. . .+...|+|.+.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~-~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---W-NSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---T-TTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---C-CCCCEEEEEEEECCCCC
Confidence 48999999999996 765 799999999987654332222 23332 45555 4 66678999999876543
No 354
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.52 E-value=0.0012 Score=52.58 Aligned_cols=69 Identities=9% Similarity=0.139 Sum_probs=46.2
Q ss_pred cCCCeEEEEEEEEec-C-CCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 25 EENSEVTLEVRLVAV-P-EPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 25 ~~G~~v~l~C~~~g~-p-~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
..|+..+|.|.+.|. | ...++|++||..+...... ...+.+..+...+.|.+. ..+...|.|.+.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCC
Confidence 457778999999987 3 3678999999987622111 122334444444556665 4577789999998643
No 355
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.51 E-value=0.00065 Score=54.56 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=49.1
Q ss_pred CCCeEEEEEEE-EecCCCeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEEE
Q psy2775 26 ENSEVTLEVRL-VAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD 101 (785)
Q Consensus 26 ~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~ 101 (785)
......+.|.+ .|+|.+.|.|+++ +...... .....++.....++|.+.....+|+-.|+|++.+........
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 34467889998 6789999999987 2111111 222233345556789998777778889999999876544333
No 356
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.50 E-value=0.00027 Score=56.92 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred eeeeeecCeEEEEEEEecC--CCC-ceEEEeCCEEecC-CCCeeEEeeCCe----EEEEEccCCCCCCceeEEEEEEcCC
Q psy2775 567 EKTVKEKGTIRLMAKVKAS--PAP-SIVWFRNNKPLLS-SPKKREIFDGEN----IILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~--P~p-~v~W~~~~~~i~~-~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
...+..|+.++|.|.+.|+ |+. .|+|+|||..... .........++. +.|.+..-.- ++.-.|+|.+.+..
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w-~~g~~ysC~V~H~~ 86 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDW-ISGDTFQCKVTHPD 86 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHc-cCCCcEEEEEECCC
Confidence 3346678999999999998 554 7999998753321 111111111222 2344443221 23446999999876
Q ss_pred cc
Q psy2775 639 GS 640 (785)
Q Consensus 639 g~ 640 (785)
..
T Consensus 87 l~ 88 (96)
T cd07696 87 LP 88 (96)
T ss_pred CC
Confidence 43
No 357
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.49 E-value=0.00067 Score=55.31 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=51.2
Q ss_pred eecCCceEecCCCeEEEEEEEEecC--C-CeeEEEECCE-Ec--------------cCCCCEEEeecCCccceEEEEEEc
Q psy2775 16 SKKTKPVYAEENSEVTLEVRLVAVP--E-PDLLWYYNGE-PL--------------QETDEVVFSDQSDMHSYVSIVTIK 77 (785)
Q Consensus 16 ~~~~~~~~v~~G~~v~l~C~~~g~p--~-~~i~W~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~L~i~ 77 (785)
..++....+..|+.++|.|+++|.. . ..+.|+|.-. .+ ....+..+..+.+. ...+|+|.
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~--ntv~L~l~ 79 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGN--EQVNFTLQ 79 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCC--CEEEEEEc
Confidence 4567788899999999999997753 3 4678988422 10 01122233333332 33569999
Q ss_pred ccCCCCCeEEEEEEE
Q psy2775 78 SIKKREEGVYTVVAK 92 (785)
Q Consensus 78 ~~~~~D~G~Y~C~a~ 92 (785)
+++.+|++.|.|...
T Consensus 80 ~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 80 NLRANQTDIYFCKIE 94 (115)
T ss_pred CCCHHHCeEEEEEee
Confidence 999999999999873
No 358
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.46 E-value=0.00089 Score=53.80 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCC--EEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 26 ENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDE--VVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 26 ~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
.++.++|.|.+.|. |. ..++|+++|.. ..... ......++.+...+.|++....-...-.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 56679999999987 33 67899999997 33211 0111224556666778777654334567999999865
No 359
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.44 E-value=0.0014 Score=52.65 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=45.5
Q ss_pred CeEEEEEEEecC-CCCceEEEeCCE----Eec-----------CCCCeeEEee---CCeEEEEEccCCCCCCceeEEEEE
Q psy2775 574 GTIRLMAKVKAS-PAPSIVWFRNNK----PLL-----------SSPKKREIFD---GENIILELKEADSETDAGDYKVVA 634 (785)
Q Consensus 574 ~~v~l~C~~~g~-P~p~v~W~~~~~----~i~-----------~~~~~~~~~~---~~~~~L~i~~~~~~~d~G~Y~C~a 634 (785)
+.++|.|..... ....|+|.|... .+. ..-..++.+. ....+|.|.+++. +|+|.|+|..
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~-~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATE-EDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCc-ccCEEEEEEE
Confidence 468999997643 234789988421 110 0000122222 2347899999999 9999999999
Q ss_pred Ec-CCcceEEEEEE
Q psy2775 635 TN-ELGSATHGARV 647 (785)
Q Consensus 635 ~n-~~g~~~~~~~l 647 (785)
.. +.|..++.+.+
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 65 46766654443
No 360
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.39 E-value=0.001 Score=53.37 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=43.8
Q ss_pred CeEEEEEEE-ecCCCCceEEEeCCEEecCCCCeeE-EeeCC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 574 GTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 574 ~~v~l~C~~-~g~P~p~v~W~~~~~~i~~~~~~~~-~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
....+.|.+ .|.|.+.|+|+++. ........ ...++ .+.|.+..... +|...|+|+|.|..-.......+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~-d~G~~~tC~v~h~~l~~~~~~~~ 91 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSRE-ANGKELTCVVSHPTLQEPQRFSV 91 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCCCeEEEE
Confidence 467899998 57899999999971 11111111 11122 34577765544 56666999999987555444444
Q ss_pred E
Q psy2775 648 T 648 (785)
Q Consensus 648 ~ 648 (785)
.
T Consensus 92 ~ 92 (95)
T cd05719 92 T 92 (95)
T ss_pred E
Confidence 3
No 361
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.38 E-value=0.001 Score=53.17 Aligned_cols=81 Identities=9% Similarity=0.033 Sum_probs=51.9
Q ss_pred eEecCCC--eEEEEEEE-EecCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCee
Q psy2775 22 VYAEENS--EVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE 97 (785)
Q Consensus 22 ~~v~~G~--~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~ 97 (785)
+.|..|. .+.+.|.+ .|.|.+.|.|+++. ....... ....++.....+.|.+.....+|+..|+|+|.+....
T Consensus 8 ~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 8 VEVSAGTIPVPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred EEeecCCCccEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 3444444 57899988 57799999999872 2211112 2222333344578988877777888999999998755
Q ss_pred EEEEeeEE
Q psy2775 98 AKMDIPVK 105 (785)
Q Consensus 98 ~~~~~~v~ 105 (785)
....+.+.
T Consensus 85 ~~~~~~~~ 92 (95)
T cd07703 85 EPQLLPVT 92 (95)
T ss_pred CCeEEEEE
Confidence 44444443
No 362
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.38 E-value=0.00068 Score=56.42 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=49.6
Q ss_pred eeeeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe--eEEeeC-Ce----EEEEEccCCCCCC-ceeEEEEEEc
Q psy2775 567 EKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIFDG-EN----IILELKEADSETD-AGDYKVVATN 636 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~--~~~~~~-~~----~~L~i~~~~~~~d-~G~Y~C~a~n 636 (785)
...+.+++.++|.|.+.|+ |.. .|+|+|||+++..+... ....++ +. +.|.|..-.. .+ ...|+|.+..
T Consensus 12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w-~~~~~~ytC~V~H 90 (115)
T cd05769 12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW-FNPRNTFTCIVQF 90 (115)
T ss_pred hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh-ccCCCeEEEEEEE
Confidence 3344567789999999996 774 89999999988654321 111221 22 3455554322 23 4579999998
Q ss_pred CCcceEEEE
Q psy2775 637 ELGSATHGA 645 (785)
Q Consensus 637 ~~g~~~~~~ 645 (785)
.........
T Consensus 91 ~g~~~~~~~ 99 (115)
T cd05769 91 YGGTDTDKW 99 (115)
T ss_pred eCCccceee
Confidence 866555433
No 363
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.38 E-value=0.00056 Score=54.84 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=41.9
Q ss_pred eeeecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCCe-eEEeeCCeE----EEEEccCCCCC-CceeEEEEEEcCC
Q psy2775 569 TVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFDGENI----ILELKEADSET-DAGDYKVVATNEL 638 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~~-~~~~~~~~~----~L~i~~~~~~~-d~G~Y~C~a~n~~ 638 (785)
.+..+..++|.|.|.|+ |.. .++|+|||..+..+... ....+++.+ .|.+. . + ....|+|.+....
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~-~~~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---K-DSLGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---c-hhCCCeEEEEEEECC
Confidence 34446789999999995 655 89999999987654321 122233332 23333 3 3 3344999999853
No 364
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.37 E-value=0.00066 Score=53.24 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=39.0
Q ss_pred eEEEEEEEEecCC--CeeEEEECCE-----Ecc-------------CCCCEEEeecCCccceEEEEEEcccCCCCCeEEE
Q psy2775 29 EVTLEVRLVAVPE--PDLLWYYNGE-----PLQ-------------ETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88 (785)
Q Consensus 29 ~v~l~C~~~g~p~--~~i~W~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 88 (785)
+++|.|.+..... ..+.|++... .+. ...++.+.... .....+|+|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT--SKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC--cCCEEEEEEcCCCHHHCEEEE
Confidence 4789999876544 3799998542 010 01233332221 122366999999999999999
Q ss_pred EEE
Q psy2775 89 VVA 91 (785)
Q Consensus 89 C~a 91 (785)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 974
No 365
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.33 E-value=0.00036 Score=49.93 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=35.9
Q ss_pred ecCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcC
Q psy2775 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 637 (785)
Q Consensus 572 ~g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~ 637 (785)
.|.+|+|+|...+. .+.|.+++..+..... .+.+.+.. +++|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~--e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF--SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC--CCCceEEEEeCCC
Confidence 58999999986632 3999999966543222 24444444 6899999999654
No 366
>KOG0613|consensus
Probab=97.33 E-value=0.0005 Score=78.08 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=129.5
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCC--C----------CCC---ceecCCCceEeccCCcEEEEEE
Q psy2775 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGK--P----------EKP---SILEPLHDVSITEGESAVLSVQ 136 (785)
Q Consensus 72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~--~----------~~p---~i~~~~~~~~~~~G~~v~l~C~ 136 (785)
.+..|.+....+.+.|+|...+..+.....+...+.... . .+| ........+....+..+.+.|.
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 457788888888899999988887766555443333211 1 111 1112223455666778999999
Q ss_pred EeccCCCe-EEEeECCEEcccce-----EEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCC
Q psy2775 137 VGGEPSPK-VEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE 210 (785)
Q Consensus 137 ~~g~p~~~-v~W~~~g~~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~ 210 (785)
..+.+.+. +.||+++....... .........+.|..+...+.+.|.|.|.|..|........+|.......
T Consensus 358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt--- 434 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGT--- 434 (1205)
T ss_pred ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCC---
Confidence 98887775 99999876654332 2334446678899999999999999999998866554444443221100
Q ss_pred CCCCCCCccccccceeeecCCCCCCCeeeecCC-cceeCCCCeEEEEEEEccCCCC--eEEEEECCEEcccceE-EEeCC
Q psy2775 211 TPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH-DVSITEGESAVLSVQVGGEPSP--KVEWYKDGKLIKDRQI-TSEKN 286 (785)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~G~~~~l~C~~~g~p~~--~v~W~~~~~~l~~~~~-~~~~~ 286 (785)
.++.+...-. ...+..-+.+.+.|...+++.+ .++|++++-....... .....
T Consensus 435 -----------------------~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~ 491 (1205)
T KOG0613|consen 435 -----------------------QPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDV 491 (1205)
T ss_pred -----------------------CCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccc
Confidence 1111111111 1122233668889988887755 5567776655542222 22333
Q ss_pred EEEEEEccCCCCCCeEEEEEEEeC
Q psy2775 287 THTLTLIQCSTKDKGRYSVKVTNK 310 (785)
Q Consensus 287 ~~~l~i~~~~~~d~G~Y~C~~~n~ 310 (785)
..+|.+.-....++|.|.-.....
T Consensus 492 ~tslLlk~~~~~~~A~~~~a~~~~ 515 (1205)
T KOG0613|consen 492 LTSLLLKVASLSDGAQYTRALRTL 515 (1205)
T ss_pred hhhheeeccCCCccchhhhhhhcc
Confidence 446777777888888886544433
No 367
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.32 E-value=0.00095 Score=56.45 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=47.5
Q ss_pred eeeeeecCeEEEEEEEecCC--CCceEEEeCC---EE--e---cC-----------CCCeeEEeeC--CeEEEEEccCCC
Q psy2775 567 EKTVKEKGTIRLMAKVKASP--APSIVWFRNN---KP--L---LS-----------SPKKREIFDG--ENIILELKEADS 623 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~---~~--i---~~-----------~~~~~~~~~~--~~~~L~i~~~~~ 623 (785)
...+.+|++++|.|...+.- ...+.|||.. .+ | .. .+++....+. ....|+|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 55789999999999987543 3469999832 11 1 00 1223333222 345799999999
Q ss_pred CCCceeEEEEEEc
Q psy2775 624 ETDAGDYKVVATN 636 (785)
Q Consensus 624 ~~d~G~Y~C~a~n 636 (785)
+|+|.|.|.+..
T Consensus 86 -~Dsa~YyCa~~~ 97 (117)
T cd04981 86 -EDTAVYYCARGL 97 (117)
T ss_pred -HHCEEEEEEEEc
Confidence 999999999875
No 368
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.26 E-value=0.0022 Score=51.49 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=47.9
Q ss_pred CCceEecCCCeEEEEEEEEec-CC-CeeEEEECCEEccCCCCE-EEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCC
Q psy2775 19 TKPVYAEENSEVTLEVRLVAV-PE-PDLLWYYNGEPLQETDEV-VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
|+...+..++.++|.|.+.|. |. ..++|.++|..+..+... .....++.+...+.|+|..-+ ....|+|.+.+..
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 444455557789999999986 43 578999999987543221 112233344455667776533 2345999999854
No 369
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.26 E-value=0.00081 Score=52.73 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=39.8
Q ss_pred eEEEEEEEecCCCC--ceEEEeCCE-----Eec-------------CCCCeeEEee--CCeEEEEEccCCCCCCceeEEE
Q psy2775 575 TIRLMAKVKASPAP--SIVWFRNNK-----PLL-------------SSPKKREIFD--GENIILELKEADSETDAGDYKV 632 (785)
Q Consensus 575 ~v~l~C~~~g~P~p--~v~W~~~~~-----~i~-------------~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C 632 (785)
+++|.|.+.....+ .+.|++... .+. ...++..... .+..+|.|.+++. +|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEE
Confidence 47899998876554 799998441 011 0122222223 5568899999999 99999999
Q ss_pred E
Q psy2775 633 V 633 (785)
Q Consensus 633 ~ 633 (785)
.
T Consensus 80 ~ 80 (81)
T smart00406 80 A 80 (81)
T ss_pred c
Confidence 6
No 370
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.24 E-value=0.00089 Score=48.23 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=41.9
Q ss_pred cCeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 573 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 573 g~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
.+.|.|+|.+. -+|.|++ |..+... .+.+|.+..... +-.|.|.|.+++ ...+..|.|.
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~---------~~~tlnLGs~~~-DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV---------SNTLLDLGSRIN-DPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc---------cccEEeccCccc-CCCcceEecCcc----CCCcEEEEEE
Confidence 45899999762 4699999 6555322 145688888888 889999999987 2334555554
No 371
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.24 E-value=0.002 Score=51.37 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCceEecCCCeEEE-EEEE-EecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 19 TKPVYAEENSEVTL-EVRL-VAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 19 ~~~~~v~~G~~v~l-~C~~-~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
-..+.+.+|+.+.+ .|.+ .|.|.+.|.|+.+..... ........++...-.+.|.+...+.+|.-.++|++.+...
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34577889999999 9987 677999999997643321 1112222333444567788888888888899999998754
Q ss_pred e
Q psy2775 97 E 97 (785)
Q Consensus 97 ~ 97 (785)
.
T Consensus 86 ~ 86 (97)
T cd07704 86 Q 86 (97)
T ss_pred C
Confidence 3
No 372
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.18 E-value=0.00071 Score=48.70 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCcEEEEEEEeccCCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201 (785)
Q Consensus 128 G~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 201 (785)
.+.|.|.|.+ ..+|.|++ |..+.... ..+|.+.....+-.|.|.|.+++ .+....|+|.
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 4579999965 24699999 55543221 55789999999999999999876 2344556665
No 373
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.14 E-value=0.0024 Score=51.36 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=40.1
Q ss_pred ecCeEEEEEEEecC-CCC-ceEEEeCCEEecCCCC-eeEEee-CCeE----EEEEccCCCCCCceeEEEEEEcCC
Q psy2775 572 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK-KREIFD-GENI----ILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 572 ~g~~v~l~C~~~g~-P~p-~v~W~~~~~~i~~~~~-~~~~~~-~~~~----~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
.++.++|.|.|.|+ |.. +|+|+|||++ ..+.. ...... ++.+ .|.+..-.- .....|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEW-KGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence 46679999999996 665 8999999998 33311 111122 3332 344443211 12556999999864
No 374
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.09 E-value=0.004 Score=49.83 Aligned_cols=71 Identities=10% Similarity=-0.007 Sum_probs=43.5
Q ss_pred CeEEEEEEEe-cCCCCceEEEeCCEEecCCCCeeE-EeeCC----eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEE
Q psy2775 574 GTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARV 647 (785)
Q Consensus 574 ~~v~l~C~~~-g~P~p~v~W~~~~~~i~~~~~~~~-~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 647 (785)
..+.+.|.+. |.|.+.|+|+++.... ..... ...++ .+.|.+..-.. +|...|+|.|+|..........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~-d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPE-ANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCCCeEEEE
Confidence 4678999876 6799999999972111 11111 11122 24567755444 66667999999987555444444
Q ss_pred E
Q psy2775 648 T 648 (785)
Q Consensus 648 ~ 648 (785)
.
T Consensus 92 ~ 92 (95)
T cd07703 92 T 92 (95)
T ss_pred E
Confidence 3
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.08 E-value=0.002 Score=46.16 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=37.1
Q ss_pred ecCCcEEEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee
Q psy2775 428 SRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491 (785)
Q Consensus 428 ~~g~~~~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 491 (785)
..|.+|+|+|...... +.|.++++.+..++. .+.+.+.. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~~--i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGDD--IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCCC--ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence 4699999999755433 999999976654322 34444445 889999999976
No 376
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.07 E-value=0.0026 Score=50.26 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=43.2
Q ss_pred eccCCcEEEEEEEec-cCC--CeEEEeECCEEcccceEEE-------eCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775 125 ITEGESAVLSVQVGG-EPS--PKVEWYKDGKLIKDRQITS-------EKNTHTLTLIQCSTKDKGRYSVKVTN 187 (785)
Q Consensus 125 ~~~G~~v~l~C~~~g-~p~--~~v~W~~~g~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n 187 (785)
+.+|..+++.|.+.+ .|. ..+.|+++...+....+.. ......++|...+.+|...|+|+|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEE
Confidence 478999999999965 444 4799999887766553322 11234566666555555599999964
No 377
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.93 E-value=0.0059 Score=48.67 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=47.8
Q ss_pred CceEeccCCcEEE-EEEE-eccCCCeEEEeECCEEcccce-EEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCe
Q psy2775 121 HDVSITEGESAVL-SVQV-GGEPSPKVEWYKDGKLIKDRQ-ITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEG 190 (785)
Q Consensus 121 ~~~~~~~G~~v~l-~C~~-~g~p~~~v~W~~~g~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g 190 (785)
....+..|+.+.+ .|.+ .|.|+++|+|+.+........ .....+ .++|.+...+.+|.-.++|++.+..-
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 3456778888888 9988 578999999998633322111 111111 34577777777888899999998754
No 378
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.68 E-value=0.0095 Score=48.74 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=47.0
Q ss_pred eeeeeeecCeEEEEEEEecCCCC---ceEEEeCCE-Ee------------c--CCCCeeE--EeeCCeEEEEEccCCCCC
Q psy2775 566 EEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNK-PL------------L--SSPKKRE--IFDGENIILELKEADSET 625 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~-~i------------~--~~~~~~~--~~~~~~~~L~i~~~~~~~ 625 (785)
....+..|..++|.|.+.|+-.. .++|+|... .+ . ...+... ....+..+|+|.+++. +
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~ 84 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-N 84 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-H
Confidence 35578889999999999886433 588988321 10 0 0111111 1234567899999999 9
Q ss_pred CceeEEEEEE
Q psy2775 626 DAGDYKVVAT 635 (785)
Q Consensus 626 d~G~Y~C~a~ 635 (785)
|++.|.|..+
T Consensus 85 DTa~Y~Ca~e 94 (115)
T cd05721 85 QTDIYFCKIE 94 (115)
T ss_pred HCeEEEEEee
Confidence 9999999874
No 379
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.68 E-value=0.0098 Score=47.04 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=41.7
Q ss_pred ecCCCeEEEEEEEEec-CC--CeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCe-EEEEEEEc
Q psy2775 24 AEENSEVTLEVRLVAV-PE--PDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEG-VYTVVAKN 93 (785)
Q Consensus 24 v~~G~~v~l~C~~~g~-p~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~a~~ 93 (785)
+.+|..++|.|.+.+. |. ..+.|++++..+....-...........-.+.++|... ++|.| .|.|+|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 3799999999999643 44 67999987766644321110000111111234666554 66666 99999973
No 380
>PHA02633 hypothetical protein; Provisional
Probab=96.60 E-value=0.006 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.2
Q ss_pred EEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeC
Q psy2775 73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108 (785)
Q Consensus 73 ~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~ 108 (785)
.|.|-++..+|+|.|.|...|..-....++.|.|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 399999999999999999999888888888888863
No 381
>PHA02982 hypothetical protein; Provisional
Probab=96.51 E-value=0.037 Score=49.48 Aligned_cols=81 Identities=17% Similarity=0.389 Sum_probs=57.1
Q ss_pred CeEEecCCcEEEEEEEeCC--CceEEEEECCEEccc-------------------CCCEEEEEeCcEEEEEEccCCCCCc
Q psy2775 424 DVKVSRDEKASFEIELTKG--DALVKWYKDGKEIAF-------------------SENVTLSIDGKKQKLIIFSAGLEDA 482 (785)
Q Consensus 424 ~~~v~~g~~~~l~C~~~~~--~~~i~W~~~~~~~~~-------------------~~~~~~~~~~~~~~L~i~~~~~~d~ 482 (785)
++....++++.|.|..... -.+..|++++..... .+.+..+.+++.++|+|..+..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 4455679999999996542 335789875422111 2345667788899999999999999
Q ss_pred EEEEEEEeec-Cccee-EEEEEEE
Q psy2775 483 GEYSCRVGDT-GDKES-KATLTVE 504 (785)
Q Consensus 483 G~Y~C~a~n~-g~~~~-~~~l~V~ 504 (785)
|-|+|+|... +..+. ..-|.|+
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~ 136 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQ 136 (251)
T ss_pred CceEEEEecCCCchheeheeeeEe
Confidence 9999999986 33333 4556664
No 382
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.48 E-value=0.0037 Score=52.34 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=47.8
Q ss_pred ecCCCeEEEEEEEEec-----CCCeeEEEECCEEccC---CCCEEEeec------CCccceEEEEEEcccCCCCCeEEEE
Q psy2775 24 AEENSEVTLEVRLVAV-----PEPDLLWYYNGEPLQE---TDEVVFSDQ------SDMHSYVSIVTIKSIKKREEGVYTV 89 (785)
Q Consensus 24 v~~G~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~---~~~~~~~~~------~~~~~~~~~L~i~~~~~~D~G~Y~C 89 (785)
..=+++|.|+|.+... +...|.|.+++..+-. ......... .....+.+.|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3448999999998541 3457999999886521 111110000 222233456888775554 899999
Q ss_pred EEEcCCeeEEEEeeEEEe
Q psy2775 90 VAKNREGEAKMDIPVKVN 107 (785)
Q Consensus 90 ~a~~~~~~~~~~~~v~v~ 107 (785)
.+.....+.+..+.|+..
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999988888877777663
No 383
>PHA02982 hypothetical protein; Provisional
Probab=96.35 E-value=0.053 Score=48.52 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=56.4
Q ss_pred eeeeeecCeEEEEEEEecC-CCCceEEEeCCEEecC-------------------CCCeeEEeeCCeEEEEEccCCCCCC
Q psy2775 567 EKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLS-------------------SPKKREIFDGENIILELKEADSETD 626 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~-------------------~~~~~~~~~~~~~~L~i~~~~~~~d 626 (785)
++....|++|.|.|..... --.+..|++++..... -..+.....+..++|+|..+.. +.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence 5566779999999994322 2237899985532221 1123344567789999999999 99
Q ss_pred ceeEEEEEEcCCcceEE-EEEEEE
Q psy2775 627 AGDYKVVATNELGSATH-GARVTV 649 (785)
Q Consensus 627 ~G~Y~C~a~n~~g~~~~-~~~l~V 649 (785)
.|=|+|.|....|..+. ..=|.|
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred CCceEEEEecCCCchheeheeeeE
Confidence 99999999987765544 334444
No 384
>PHA02633 hypothetical protein; Provisional
Probab=96.33 E-value=0.011 Score=41.54 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=30.7
Q ss_pred EEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 614 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
.-|-|-++.. +|+|.|.|+..|+.-..+.++.|.|.
T Consensus 18 ~nLwilpa~~-sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 18 NNMLILNPTQ-SDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccEEEecccc-ccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 3488888888 99999999999988888888888876
No 385
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.30 E-value=0.0062 Score=48.91 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=41.1
Q ss_pred EecCCcEEEEEEEeCCC----ceEEEEECCEEcccC-CCEEEEEeCc---EEEEEEccCCCCCcEEEEEEEeecC
Q psy2775 427 VSRDEKASFEIELTKGD----ALVKWYKDGKEIAFS-ENVTLSIDGK---KQKLIIFSAGLEDAGEYSCRVGDTG 493 (785)
Q Consensus 427 v~~g~~~~l~C~~~~~~----~~i~W~~~~~~~~~~-~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~g 493 (785)
+..+..++|.|.+.+.. ..|+|.++|.. ... .......++. .+.|.+..-.......|+|.+.+.+
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 44688999999999843 46999999875 111 1111111222 3556665444455566999999863
No 386
>KOG1480|consensus
Probab=96.22 E-value=0.001 Score=70.90 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=99.2
Q ss_pred CCeeeecCCcceeCCCCeEEEEEEEccCCCCeE----EEEECCEEcccceEE----EeCCEEEEEEccCCCCCC---eEE
Q psy2775 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKV----EWYKDGKLIKDRQIT----SEKNTHTLTLIQCSTKDK---GRY 303 (785)
Q Consensus 235 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~v----~W~~~~~~l~~~~~~----~~~~~~~l~i~~~~~~d~---G~Y 303 (785)
-|.|+..+....+..+..+.|.|.+...+...+ .|..+.+........ .........|.....++. -.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 467778888888999999999999864443322 355433222100000 000111233333322222 225
Q ss_pred --EEEEEeCCCceEEE-EEEEEeccccceeeeccceeEeeCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEEEEcC
Q psy2775 304 --SVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKG 378 (785)
Q Consensus 304 --~C~~~n~~g~~~~~-~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~~ 378 (785)
.|.+....|...+. ..+.+.+...-+...+.-..+..+....+.|.... +.+.+.|++++..+............
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~ 183 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH 183 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC
Confidence 45565656622211 11111122222344455567888888999988754 56789999999888775555555555
Q ss_pred cEEEEEEcCCCCCCceEEEEEEeccc
Q psy2775 379 TIRKLLIRNISVHDEGEYTCSLPDQE 404 (785)
Q Consensus 379 ~~~~l~i~~~~~~d~G~Y~C~a~n~~ 404 (785)
. +.+..+...|.|+|+|+|.|..
T Consensus 184 ~---li~~~arlsd~~nytc~a~ni~ 206 (909)
T KOG1480|consen 184 N---LIISQARLSDSGNYTCEATNIV 206 (909)
T ss_pred C---ccccchhhhhcccceeeeehhh
Confidence 5 9999999999999999998743
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.21 E-value=1.5 Score=43.76 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=95.1
Q ss_pred CCeEEecCCcEEEEEEEeC-C---CceEEEEECCEEcc-----------------cCCCEEEEEe------CcEEEEEEc
Q psy2775 423 QDVKVSRDEKASFEIELTK-G---DALVKWYKDGKEIA-----------------FSENVTLSID------GKKQKLIIF 475 (785)
Q Consensus 423 ~~~~v~~g~~~~l~C~~~~-~---~~~i~W~~~~~~~~-----------------~~~~~~~~~~------~~~~~L~i~ 475 (785)
....+..|..+.|.|..+- + -....|+-.|-++. ..+.+.++.. -..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4466777999999999875 2 23578987554332 1223444432 236899999
Q ss_pred cCCCCCcEEEEEEEeec-CcceeEEEEEEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCC
Q psy2775 476 SAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS 554 (785)
Q Consensus 476 ~~~~~d~G~Y~C~a~n~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 554 (785)
.++.+++|-|.|+|... -......-|.|... +-+.|.
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~------------------------------V~f~W~------------ 389 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH------------------------------VFFKWN------------ 389 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccE------------------------------EEEEEE------------
Confidence 99999999999999874 33333444444432 223442
Q ss_pred CCCCCeEeeeeeeeeeeec-CeEEEEEEEecC--CCCceEEEeCCEEecCCCCeeE------EeeC-CeEEEEEccCCCC
Q psy2775 555 PGQAPLFIERFEEKTVKEK-GTIRLMAKVKAS--PAPSIVWFRNNKPLLSSPKKRE------IFDG-ENIILELKEADSE 624 (785)
Q Consensus 555 ~~~~p~~~~~~~~~~v~~g-~~v~l~C~~~g~--P~p~v~W~~~~~~i~~~~~~~~------~~~~-~~~~L~i~~~~~~ 624 (785)
.+| ......|-+..+ .++++.|.-+|........... +.++ ....+.|.+-..
T Consensus 390 ----------------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d- 452 (500)
T PHA02914 390 ----------------TEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRD- 452 (500)
T ss_pred ----------------eccCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccC-
Confidence 122 345677877655 4558999998876543221111 1111 234577777655
Q ss_pred CC-ceeEEEEEEcCCcc
Q psy2775 625 TD-AGDYKVVATNELGS 640 (785)
Q Consensus 625 ~d-~G~Y~C~a~n~~g~ 640 (785)
.| --.-.|+.--..|-
T Consensus 453 ~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 453 KDTVKKLSCINITGQGY 469 (500)
T ss_pred ccccccceEEEecCCCc
Confidence 55 45577876655443
No 388
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.96 E-value=0.0048 Score=51.71 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=46.7
Q ss_pred eeecCeEEEEEEEecC-----CCCceEEEeCCEEecCCCC--eeEE-----------eeCCeEEEEEccCCCCCCceeEE
Q psy2775 570 VKEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPK--KREI-----------FDGENIILELKEADSETDAGDYK 631 (785)
Q Consensus 570 v~~g~~v~l~C~~~g~-----P~p~v~W~~~~~~i~~~~~--~~~~-----------~~~~~~~L~i~~~~~~~d~G~Y~ 631 (785)
..-+++|.|.|.+... +...|.|.++|..+-.-+. .... ...+..+|.+...+. -.|.|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a--~~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA--VEGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH--H-EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc--cccceE
Confidence 4457999999999763 2235999999987632111 0000 012345588877554 389999
Q ss_pred EEEEcCCcceEEEEEEEEE
Q psy2775 632 VVATNELGSATHGARVTVD 650 (785)
Q Consensus 632 C~a~n~~g~~~~~~~l~V~ 650 (785)
|.+.+...+.+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999888877777777664
No 389
>KOG4597|consensus
Probab=95.65 E-value=0.023 Score=57.43 Aligned_cols=94 Identities=10% Similarity=0.031 Sum_probs=69.3
Q ss_pred CeeeecCCceEecCCCeEEEEEEEEecCCCeeEEEEC---CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEE
Q psy2775 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYN---GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89 (785)
Q Consensus 13 p~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 89 (785)
|-+..-|....|..|++..++|-+.|.+.+.|+|.+. ...+......... .-..+....|.|-+....|+|.|+|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e--~p~vtstcql~ic~ewq~~a~w~tC 274 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVE--NPVVTSTCQLVICNEWQADAGWYTC 274 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccC--CcceeeeeeEEEcchhhcCCCceee
Confidence 5666778899999999999999999999999999753 2211111111100 0011233669999999999999999
Q ss_pred EEEcCCeeEEEEeeEEEeC
Q psy2775 90 VAKNREGEAKMDIPVKVNT 108 (785)
Q Consensus 90 ~a~~~~~~~~~~~~v~v~~ 108 (785)
.+.+..|....++.+.+..
T Consensus 275 s~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 275 SARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred ccccccceeeccceeeeec
Confidence 9999999888888877754
No 390
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.95 E-value=0.57 Score=43.12 Aligned_cols=78 Identities=9% Similarity=0.116 Sum_probs=40.9
Q ss_pred cccCCCcCCCCCCcEEeecCCeEEEEEEEecCCCC--ceEEeECCEEeeeccccccch------hhhcccccceeeeeec
Q psy2775 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP--KAEWTVNGTVIVPSKRVKGKA------EFIKKLDDLEVKEREN 761 (785)
Q Consensus 690 ~~~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~~~~~~~~~~------~~~~~l~~~~v~~~~~ 761 (785)
+..+|.|+. ....| ...|.+.-.|.. .+.|+.++............. .+. .++..--.....
T Consensus 79 Vy~~P~vsv------~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglv-nirs~~pls~~~ 148 (211)
T PF02124_consen 79 VYPKPRVSV------RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLV-NIRSRRPLSDED 148 (211)
T ss_pred eecCCEEEE------EecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCccee-EeecccCCCccC
Confidence 446666653 23223 346888877755 789999998753333222211 121 122211122333
Q ss_pred --eEEEEEEecccceeEE
Q psy2775 762 --AVLEVEVTSDKADVKW 777 (785)
Q Consensus 762 --~~~~c~~~~~~~~~~w 777 (785)
-+|+|.+.|=...+-|
T Consensus 149 ~~~~YtC~l~GYP~~~p~ 166 (211)
T PF02124_consen 149 GPVEYTCRLIGYPDILPV 166 (211)
T ss_pred CceeEEEEEeeCCCCCCc
Confidence 4999999983333333
No 391
>KOG4597|consensus
Probab=94.92 E-value=0.029 Score=56.76 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=67.3
Q ss_pred CeEeeeeeeeeeeecCeEEEEEEEecCCCCceEEEe---CCEEecCCCCe--eEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKPLLSSPKK--REIFDGENIILELKEADSETDAGDYKVV 633 (785)
Q Consensus 559 p~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~---~~~~i~~~~~~--~~~~~~~~~~L~i~~~~~~~d~G~Y~C~ 633 (785)
+.++.-+....+-.+++..++|.+.|.|.+.|.|-+ |+..+...... ....-.....|.|-+... .|+|-|+|.
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq-~~a~w~tCs 275 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQ-ADAGWYTCS 275 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhh-cCCCceeec
Confidence 445555566778899999999999999999999965 33333221111 001112345699999999 999999999
Q ss_pred EEcCCcceEEEEEEEEE
Q psy2775 634 ATNELGSATHGARVTVD 650 (785)
Q Consensus 634 a~n~~g~~~~~~~l~V~ 650 (785)
|.|..|.....+.+.+.
T Consensus 276 ~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 276 ARCGAGFLRRDVPCSSV 292 (560)
T ss_pred cccccceeeccceeeee
Confidence 99999999888888775
No 392
>PHA03042 CD47-like protein; Provisional
Probab=94.45 E-value=0.2 Score=47.29 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=48.3
Q ss_pred eecCeEEEEEEEecC-----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEE
Q psy2775 571 KEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645 (785)
Q Consensus 571 ~~g~~v~l~C~~~g~-----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~ 645 (785)
.-.+++.+.|.++.- -...+.|..+++.+...+.. ..++|.+.... .-.|.|+|+|.+...+.....
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~I 100 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNTI 100 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEeccc--cCCCceeEEEeecccCccEEE
Confidence 457899999998852 23469999999887543321 23557776543 568999999998766555544
Q ss_pred EEEE
Q psy2775 646 RVTV 649 (785)
Q Consensus 646 ~l~V 649 (785)
.|.-
T Consensus 101 eLk~ 104 (286)
T PHA03042 101 ELQY 104 (286)
T ss_pred EEEE
Confidence 4443
No 393
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=94.39 E-value=3.3 Score=38.30 Aligned_cols=135 Identities=11% Similarity=0.194 Sum_probs=70.5
Q ss_pred CeeEEEECCEEccCCC---CEEEeecCCccceEEEEEE-cccCCCCCeEEEEEEEcCCe-eEEEEeeEEEeCCCCCCCce
Q psy2775 42 PDLLWYYNGEPLQETD---EVVFSDQSDMHSYVSIVTI-KSIKKREEGVYTVVAKNREG-EAKMDIPVKVNTGKPEKPSI 116 (785)
Q Consensus 42 ~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i-~~~~~~D~G~Y~C~a~~~~~-~~~~~~~v~v~~~~~~~p~i 116 (785)
..+.||.||..+.... ......+ +..+..++|++ .+...+-.-..+|++.=... .........+ .|.+
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~-G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~------~P~V 79 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSD-GLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA------TPSV 79 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecC-CcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc------ccce
Confidence 3689999999876432 2222233 45667788999 45555566789999873322 2333322222 2333
Q ss_pred ecCCC-ceEeccCCcEEEEEEEeccC--CCeEEEeECCEEcccce-EEEeC----CEEEEEEcccC--CCCcE--EEEEE
Q psy2775 117 LEPLH-DVSITEGESAVLSVQVGGEP--SPKVEWYKDGKLIKDRQ-ITSEK----NTHTLTLIQCS--TKDKG--RYSVK 184 (785)
Q Consensus 117 ~~~~~-~~~~~~G~~v~l~C~~~g~p--~~~v~W~~~g~~~~~~~-~~~~~----~~~~L~i~~~~--~~d~G--~Y~C~ 184 (785)
...+. .+....|. ..|.+.-.| ...+.|.-++....... ....+ ....+.|.+.. ....| +|+|+
T Consensus 80 y~~P~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~ 156 (211)
T PF02124_consen 80 YPKPRVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCR 156 (211)
T ss_pred ecCCEEEEEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEE
Confidence 32222 22233333 346664444 26899998776542221 11111 11234444332 23345 89999
Q ss_pred EE
Q psy2775 185 VT 186 (785)
Q Consensus 185 a~ 186 (785)
+.
T Consensus 157 l~ 158 (211)
T PF02124_consen 157 LI 158 (211)
T ss_pred Ee
Confidence 86
No 394
>PHA03042 CD47-like protein; Provisional
Probab=94.32 E-value=0.14 Score=48.31 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=47.0
Q ss_pred CCcEEEEEEEecc-----CCCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775 128 GESAVLSVQVGGE-----PSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200 (785)
Q Consensus 128 G~~v~l~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 200 (785)
++++.+.|.+... ....++|.+||+.+....-. ..++|++.. ...-.|+|+|+|.+...+.+....|+-
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence 6789999998632 24479999999887544222 235677664 455689999999876655555555443
No 395
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.11 E-value=0.064 Score=53.09 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=18.4
Q ss_pred eEEEEEEEecC-CCC-ceEEEeC
Q psy2775 575 TIRLMAKVKAS-PAP-SIVWFRN 595 (785)
Q Consensus 575 ~v~l~C~~~g~-P~p-~v~W~~~ 595 (785)
.++|.|.|.|+ |.. ++.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999997 665 8999999
No 396
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.10 E-value=0.28 Score=39.16 Aligned_cols=43 Identities=35% Similarity=0.429 Sum_probs=33.1
Q ss_pred eEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 606 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+..+.....+|.|+.++. .|+|.|.-+++|..|.. .+....|.
T Consensus 63 r~~F~~enlaLlIkaAq~-qDSG~Y~LEvT~~sG~V-~~~~FqVs 105 (108)
T PF11465_consen 63 RFNFTSENLALLIKAAQP-QDSGLYCLEVTNESGKV-CTKNFQVS 105 (108)
T ss_dssp HEEEETTTTEEEESS-SG-GG-EEEEEEEEETTSCE-EEEEEEEE
T ss_pred eEeeeccCceEEEeecCc-ccCceEEEEEEcCCCcE-EEEEEEEE
Confidence 455666778899999999 99999999999999987 44555554
No 397
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.51 E-value=0.12 Score=48.69 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=35.6
Q ss_pred CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCC
Q psy2775 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638 (785)
Q Consensus 586 P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~ 638 (785)
..|.+.|...+..+..+.....+.+ ++.|++.++.. +++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~--TG~L~~~~F~e-smSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE--TGKLMFKNFQE-SMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc--CceEEeecccc-ccCCceEEEEEEEe
Confidence 4689999986544444443333333 33499999999 99999999998654
No 398
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.15 E-value=0.53 Score=46.85 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=27.1
Q ss_pred ccccCCCCeeeecCCceEecCCCeEEEEEEEEecCC--CeeEEEEC
Q psy2775 6 DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYN 49 (785)
Q Consensus 6 ~~~~~~~p~~~~~~~~~~v~~G~~v~l~C~~~g~p~--~~i~W~~~ 49 (785)
.|.+..||....-... ..+ .++|+|.|.|+-+ ..+.|.++
T Consensus 197 ~L~R~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 197 NIPKPVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred ccCCCCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 4566677776553221 122 6899999999833 57899999
No 399
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.64 E-value=0.15 Score=47.99 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=39.6
Q ss_pred CCceEEEEEC-CEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec
Q psy2775 442 GDALVKWYKD-GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT 492 (785)
Q Consensus 442 ~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 492 (785)
.+|.+.|... |+.+.....+.+...| .|.+.+....++|.|+|..+..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 4688999885 6667666677777777 6999999999999999999863
No 400
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.18 E-value=0.63 Score=37.26 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=32.5
Q ss_pred ceEEEeCCEEEEEEccCCCCCCeEEEEEEEeCCCceEEE-EEEEE
Q psy2775 279 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322 (785)
Q Consensus 279 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v 322 (785)
.++.+...+.+|.|+.++..|+|.|.-.+++..|..... |.+.|
T Consensus 62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 345666667799999999999999999999999887432 44444
No 401
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=91.17 E-value=0.89 Score=35.86 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=46.3
Q ss_pred cCCceEecCCCeEEEEEEEEec-----CCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEE
Q psy2775 18 KTKPVYAEENSEVTLEVRLVAV-----PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAK 92 (785)
Q Consensus 18 ~~~~~~v~~G~~v~l~C~~~g~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 92 (785)
.|....+..|.++++.|...-. ....|.|..++..++... +....+. .+.+++.+.....+-.|-|...
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q-y~~in~~-----~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ-YRVINDT-----VSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC-EEEESTT-----EEEEEESS--SSEEEEEEEEEC
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH-cceeCCe-----EEEEEEccCCCCCceEEEEEEc
Confidence 4667788999999999999422 345799999998665544 3333322 2678899888777778888744
No 402
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=90.59 E-value=5.9 Score=34.75 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=49.7
Q ss_pred cCCeEEEEEEEec-CCCCceEEeECCEEeeeccccccchhhh---c-----ccccceeeeeeceEEEEEEec---cccee
Q psy2775 708 KGEDLKIEVRFKA-LPPPKAEWTVNGTVIVPSKRVKGKAEFI---K-----KLDDLEVKERENAVLEVEVTS---DKADV 775 (785)
Q Consensus 708 ~g~~~~l~C~~~g-~P~p~i~W~~~~~~~~~~~~~~~~~~~~---~-----~l~~~~v~~~~~~~~~c~~~~---~~~~~ 775 (785)
.|+.+ .|.++. ...|.|+|......|.++.-.++=++++ + ...+..-+..++-.|.|++.. ...++
T Consensus 108 kg~rA--vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~Da~t~~~ 185 (226)
T PF05955_consen 108 KGHRA--VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALDAKTSDY 185 (226)
T ss_pred cCcEE--EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccccccccee
Confidence 45544 687766 5688999999999998887655422222 1 222333335577889999985 55799
Q ss_pred EEeecCc
Q psy2775 776 KWFKNNS 782 (785)
Q Consensus 776 ~w~~~~~ 782 (785)
+|++++.
T Consensus 186 kv~~~a~ 192 (226)
T PF05955_consen 186 KVLRNAY 192 (226)
T ss_pred eeccCcc
Confidence 9999874
No 403
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.58 E-value=2.1 Score=32.96 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=24.7
Q ss_pred EEEcccCCCCCeEEEEEE-EcCCeeEEEEeeEEE
Q psy2775 74 VTIKSIKKREEGVYTVVA-KNREGEAKMDIPVKV 106 (785)
Q Consensus 74 L~i~~~~~~D~G~Y~C~a-~~~~~~~~~~~~v~v 106 (785)
+........|+|.+.|.| .+..........|.+
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 566678889999999999 666665666555554
No 404
>PHA03283 envelope glycoprotein E; Provisional
Probab=90.57 E-value=6.9 Score=41.16 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=54.4
Q ss_pred EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEeecCCCCCCCCCCCCCCCccccccceeeecCCCCCCCeeeecCCc
Q psy2775 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD 244 (785)
Q Consensus 165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 244 (785)
...|.|.+++.+++|.|+-...+..+.....+.|+|......... ++.+...+.+... ..-..+.....
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~--~Pp~~~pv~P~~h---------~a~f~v~nYhS 201 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT--PPAPLVPQVPARH---------HTDFHVRGYHS 201 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC--CCCCccccCCccC---------CceEEEeccee
Confidence 357999999999999999999988774455566666542221111 0000000001100 11123344556
Q ss_pred ceeCCCCeEEEEEEEccCC-----CCeEEEEE
Q psy2775 245 VSITEGESAVLSVQVGGEP-----SPKVEWYK 271 (785)
Q Consensus 245 ~~~~~G~~~~l~C~~~g~p-----~~~v~W~~ 271 (785)
.....|+++.+.-...... ...+.|+.
T Consensus 202 ~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 202 RVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 6778899877765553321 23788875
No 405
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.29 E-value=3.1 Score=32.79 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=42.7
Q ss_pred eeeeeeecCeEEEEEEEecC-----CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEE
Q psy2775 566 EEKTVKEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~-----P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~ 633 (785)
+...+..|++++..|...-. ....|.|..|+..++. +.++. .++..+.+++.+... ..+-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~-in~~~SsVT~~~~~~-~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRV-INDTVSSVTLPNLNP-TGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEE-ESTTEEEEEESS--S-SEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcce-eCCeEEEEEEccCCC-CCceEEEEE
Confidence 35578899999999998632 3457999999996654 34444 445557889988866 555567666
No 406
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.27 E-value=2.9 Score=32.19 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=33.6
Q ss_pred CCeEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEE-EcCCeeEEEEEEEEe
Q psy2775 142 SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNV 200 (785)
Q Consensus 142 ~~~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V 200 (785)
.+.+.|+..+..+... ...+........|+|.+.|.| .+..-..+....|.|
T Consensus 26 ~~~~~l~~~~~k~~~~-------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLET-------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEE-------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCcccccc-------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 3467777655443211 224566677889999999999 666655555555555
No 407
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=87.55 E-value=6.5 Score=31.01 Aligned_cols=78 Identities=6% Similarity=0.069 Sum_probs=49.2
Q ss_pred eeecCCceEecCCCeEEEEEEEEecCCC-eeEEEEC--CEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEE
Q psy2775 15 FSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYN--GEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA 91 (785)
Q Consensus 15 ~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 91 (785)
+...|....|..|+++.++|..+- +.+ .+-|--. ...+..+... ..+.+.+++. | ..-.|.+
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~~W------------~~f~LsnV~~-d-s~~~C~~ 70 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGPQW------------KAFQLSNVTE-D-SSPLCFF 70 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEETTE------------EEEEEEEE-S-C-EEEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCCcE------------EEEEEEcccc-C-CeEEEEE
Confidence 345788999999999999999743 333 3444311 1111111111 2367788885 5 5678999
Q ss_pred EcCCeeEEEEeeEEEe
Q psy2775 92 KNREGEAKMDIPVKVN 107 (785)
Q Consensus 92 ~~~~~~~~~~~~v~v~ 107 (785)
.........+..|.|+
T Consensus 71 ~C~g~Q~~~~~~ItVY 86 (91)
T PF03921_consen 71 NCSGEQSSASANITVY 86 (91)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EcCCeEEEeEEeeEEe
Confidence 9876666777888887
No 408
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=87.30 E-value=7 Score=30.91 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=49.8
Q ss_pred ccccCCCCeeeecCCceEecCC----CeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCC
Q psy2775 6 DILEGIPPTFSKKTKPVYAEEN----SEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKK 81 (785)
Q Consensus 6 ~~~~~~~p~~~~~~~~~~v~~G----~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 81 (785)
......+|+|..++....+... +...|.+++.+. ...+.||.|+..+...... ..+.+ ..
T Consensus 4 ~~~~~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~------------~~~~~---~~ 67 (89)
T PF06832_consen 4 GQQSGSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG------------HQLFW---QP 67 (89)
T ss_pred cccCCCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCC------------CeEEe---CC
Confidence 4556788999887765444332 255666666555 4489999999988333221 01323 23
Q ss_pred CCCeEEEEEEEcCCeeEEE
Q psy2775 82 REEGVYTVVAKNREGEAKM 100 (785)
Q Consensus 82 ~D~G~Y~C~a~~~~~~~~~ 100 (785)
...|.|+-.+....|....
T Consensus 68 ~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 68 DRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred CCCeeEEEEEEcCCCCEEE
Confidence 5689999999887775443
No 409
>PHA03286 envelope glycoprotein E; Provisional
Probab=87.29 E-value=16 Score=37.63 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=53.9
Q ss_pred EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE-EEEEeecCCCCCCCC-CCCCCCCccccccceeeecCCCCCCCeeeecC
Q psy2775 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKE-TPPSPPPYVVSELDTLQVNTGKPEKPSILEPL 242 (785)
Q Consensus 165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 242 (785)
...|.|.+++.+++|.|+-...|..|....+ +.|.|.+..+..... ..+..|.. . ..-..+...
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~-----~---------~~~f~l~ny 191 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPS-----T---------RVDLSLKNF 191 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcc-----c---------ceEEEEecc
Confidence 4579999999999999999999887655444 566665432211100 00001100 0 011234455
Q ss_pred CcceeCCCCeEEEEEEEcc-----CCCCeEEEEE
Q psy2775 243 HDVSITEGESAVLSVQVGG-----EPSPKVEWYK 271 (785)
Q Consensus 243 ~~~~~~~G~~~~l~C~~~g-----~p~~~v~W~~ 271 (785)
.......|+++.+.-.... .....+.|+.
T Consensus 192 ~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 192 KAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred cceEecCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 6677788999877665541 1233788875
No 410
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=87.23 E-value=1.6 Score=46.17 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=0.0
Q ss_pred EEEEEccCCCCCcEEEEEEEeecCcce--eEEEEEEEcC
Q psy2775 470 QKLIIFSAGLEDAGEYSCRVGDTGDKE--SKATLTVEAP 506 (785)
Q Consensus 470 ~~L~i~~~~~~d~G~Y~C~a~n~g~~~--~~~~l~V~~~ 506 (785)
..|.|.+++..|+|.|+-...+.+... ..+.|.|..+
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~ 127 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP 127 (439)
T ss_dssp ---------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence 359999999999999999998763222 3355555554
No 411
>PHA03283 envelope glycoprotein E; Provisional
Probab=86.65 E-value=7 Score=41.12 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=28.7
Q ss_pred eEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 613 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
..-|.|.+++. +++|.|+-...|+.+.....+.|.|+
T Consensus 133 ~~~l~I~~at~-~~aGVYtly~r~d~~~~~~vflvtVk 169 (542)
T PHA03283 133 RSVLQIQRATP-NIAGVYTLHVSSDGMMKHSVFFVTVK 169 (542)
T ss_pred CCeeEEEeccc-ccCeEEEEEecCCCceEEEEEEEEec
Confidence 45599999999 99999999999988744444444444
No 412
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=86.28 E-value=11 Score=29.82 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCCeEeeeeeeeeeeec----CeEEEEEEEecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775 557 QAPLFIERFEEKTVKEK----GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 632 (785)
Q Consensus 557 ~~p~~~~~~~~~~v~~g----~~v~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C 632 (785)
.++.|+.+.....+... +...|.+.+.|. .+.+.||-||..+..... ...+.+.. ...|.|+-
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~~~~----~~~G~h~l 75 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLFWQP----DRPGEHTL 75 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEEeCC----CCCeeEEE
Confidence 35666666554444333 356677777766 559999999999843322 12244432 46799999
Q ss_pred EEEcCCcceEE
Q psy2775 633 VATNELGSATH 643 (785)
Q Consensus 633 ~a~n~~g~~~~ 643 (785)
.+....|....
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 99998887654
No 413
>PHA03282 envelope glycoprotein E; Provisional
Probab=85.82 E-value=25 Score=36.57 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=23.4
Q ss_pred EEEEEEcccCCCCcEEEEEEEEcCCeeEEEE
Q psy2775 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA 195 (785)
Q Consensus 165 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 195 (785)
+..|+|.|...+++|-|.|.+..+ |..+.-
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~yN-GHVeAW 361 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYVN-GHVHAW 361 (540)
T ss_pred ccceEecCCCcccCceEEEEEEEC-Ceeeee
Confidence 347999999999999999998743 444443
No 414
>PHA03052 Hypothetical protein; Provisional
Probab=85.79 E-value=2.5 Score=30.53 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCceEecCCCeEEEEEEEE-e--cCCCeeEEEECCEEc
Q psy2775 19 TKPVYAEENSEVTLEVRLV-A--VPEPDLLWYYNGEPL 53 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~-g--~p~~~i~W~~~~~~~ 53 (785)
|..+.+..|.+++|.|.+. | ...+.+.|..|+..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4778899999999999994 2 234678999998876
No 415
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=84.22 E-value=19 Score=28.49 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCceEeccCCcEEEEEEEeccCCC-eEEEeECCEEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEE
Q psy2775 119 PLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197 (785)
Q Consensus 119 ~~~~~~~~~G~~v~l~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 197 (785)
.+....+..|+++.+.|..+ -+.+ .+.|.-. +..........-..+.+.+++. | ..-.|.+.-...+...++.
T Consensus 9 ~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~---L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ 82 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETS---LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASAN 82 (91)
T ss_dssp ESSEEEEETTEEEEEEEEES-SSS-SEEEEESS---SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEE
T ss_pred ECCccEECCCCCEEEEEcCC-CCCCCcceEEEe---cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEe
Confidence 44567788999999999985 2333 4555321 1112222334455788888886 4 5668998866556667788
Q ss_pred EEeecC
Q psy2775 198 LNVDPY 203 (785)
Q Consensus 198 l~V~~~ 203 (785)
|+|+..
T Consensus 83 ItVY~~ 88 (91)
T PF03921_consen 83 ITVYKP 88 (91)
T ss_dssp EEEEB-
T ss_pred eEEeCC
Confidence 888743
No 416
>PHA03281 envelope glycoprotein E; Provisional
Probab=83.69 E-value=13 Score=39.25 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=83.2
Q ss_pred EEEEccCCCCCcEEEEEEEeec-Ccce-eEEEEEEEcCcccccccCCCe----------------eEEeccCceeEEEEe
Q psy2775 471 KLIIFSAGLEDAGEYSCRVGDT-GDKE-SKATLTVEAPAVEFLTKLPSV----------------TLVPHLGDATFQVEL 532 (785)
Q Consensus 471 ~L~i~~~~~~d~G~Y~C~a~n~-g~~~-~~~~l~V~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 532 (785)
.|.|.+++..++|.|+--.... |... ..+-++|+..+..- .+.|.+ -++..+....+...+
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~r-ip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENH-IDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccC-CCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 6999999999999999877754 4333 35667776643111 111111 122223333444433
Q ss_pred c------CCceeeEEeeccccccc---------CCCCCCCCCeEeeeee--------eeeeeecCeEEEEEEEecCCCCc
Q psy2775 533 S------SPDIQVKWLNLFIVPTC---------PLGSPGQAPLFIERFE--------EKTVKEKGTIRLMAKVKASPAPS 589 (785)
Q Consensus 533 ~------~~~~~~~W~~~~~~~~~---------~~~~~~~~p~~~~~~~--------~~~v~~g~~v~l~C~~~g~P~p~ 589 (785)
. .-...+.|+.-...-.| +..+. +|..+.+-. -.....+..+.-.|...+.+++.
T Consensus 378 ~s~ihD~pFsleI~Wyy~p~~p~C~~mrIYEtCIFHP~--APeCL~Peda~CsFASP~ra~~Va~R~Y~nCs~~~~wp~~ 455 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLYVPIDPTCQPMRLYSACLYHEN--APQCLSHENPECTFASPHIAQRVANTVYQNCEHADNYTAD 455 (642)
T ss_pred eeeccCCCceeEEEEEEecCCCCCceEEeecccccCCC--chhhcCcCCCCcccccchhHHHHHHHHhcCCCCCCCCCCC
Confidence 2 23667899876665434 33322 222222100 01122334445556654333221
Q ss_pred eEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEE-cCCcceEE
Q psy2775 590 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT-NELGSATH 643 (785)
Q Consensus 590 v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~-n~~g~~~~ 643 (785)
-. ....+. ....+....+...|.+.++.. +++|.|.|++. |++-.+..
T Consensus 456 C~---sis~m~--p~~gL~~~~n~vdL~F~nApa-saSGLYVfVl~yNGHVeAWt 504 (642)
T PHA03281 456 CL---AISHME--PGFGLEIHDGGSALKFVDAAE-SLSGLYVFIIHFNGHVEAVA 504 (642)
T ss_pred CC---cccccC--ccccccccCCCcceEeccCCc-ccCceEEEEEEECCeeeeeE
Confidence 11 000010 111122233445599999998 99999999998 55444443
No 417
>PHA03052 Hypothetical protein; Provisional
Probab=83.63 E-value=3.2 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=29.5
Q ss_pred CcEEeecCCeEEEEEEEe-cCC--CCceEEeECCEEeeecc
Q psy2775 702 PEVLVKKGEDLKIEVRFK-ALP--PPKAEWTVNGTVIVPSK 739 (785)
Q Consensus 702 ~~~~~~~g~~~~l~C~~~-g~P--~p~i~W~~~~~~~~~~~ 739 (785)
..+.+..|..++|.|++. |.| .+.+.|.-|+..+..++
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 456788999999999984 333 45788999999996654
No 418
>KOG1026|consensus
Probab=83.45 E-value=2.1 Score=47.70 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=91.7
Q ss_pred CeEEecCCcEEEEEEEeC-CCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeec-CcceeEEEE
Q psy2775 424 DVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATL 501 (785)
Q Consensus 424 ~~~v~~g~~~~l~C~~~~-~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-g~~~~~~~l 501 (785)
...+..|..+++.|.+.+ +.+...|+.++............-. .-...+.+ +.|.+.|. |....++.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--SECEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--ccceeeec--------hhhHHHHhhhhcCceeee
Confidence 345678999999999998 7788999987765533221111000 01111111 89999998 888888888
Q ss_pred EEEcCcccccccCCCeeEEeccCceeEEEEecCCceeeEEeecccccccCCCCCCCCCeEeeeeeeeeeeecCeEEEEEE
Q psy2775 502 TVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581 (785)
Q Consensus 502 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~ 581 (785)
.+..+........+.-. .=.|.
T Consensus 271 ~~~~p~~~~~~~~~~~~----------------------------------------------------------~~~C~ 292 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLSD----------------------------------------------------------HHNCI 292 (774)
T ss_pred EEecccccccCCCCccc----------------------------------------------------------cCcee
Confidence 88776433222211110 11121
Q ss_pred ---EecCCCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEE
Q psy2775 582 ---VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650 (785)
Q Consensus 582 ---~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 650 (785)
+.+.|.+..+|..++..+...........+...-+....... .+.|.|+|.+.|..|.........+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h-~~~~~~~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 293 PIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPH-SHNGNYTLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred eeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcc-cccCcceeeecccCccccccCcCccc
Confidence 226677788888877664322211111122101233444455 78999999999999987665555444
No 419
>KOG1026|consensus
Probab=82.53 E-value=1.5 Score=48.78 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=91.7
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCeeEEE
Q psy2775 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKM 100 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~ 100 (785)
...+..|..+++.|.+.+.|.+.+.|+.++............... -...+.+ +.|.+.|..+....
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~------~~~~~~~--------~~c~~E~~~~~~~~ 266 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRS------ECEVLEN--------DLCIAENAVARSNP 266 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccc------cceeeec--------hhhHHHHhhhhcCc
Confidence 567789999999999999999999999887665443322111111 0011222 89999998887776
Q ss_pred EeeEEEeCCCCCCCceecCCCceEeccCCcEEEEEEE---eccCCCeEEEeECCEEcccceE---EEeCCEEEEEEcccC
Q psy2775 101 DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQI---TSEKNTHTLTLIQCS 174 (785)
Q Consensus 101 ~~~v~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~---~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~~~ 174 (785)
.+.+.+.. ++......... ++ .-.|.. .++|.+...|..++..+..... .......-+......
T Consensus 267 ~v~~~~~~----p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~ 336 (774)
T KOG1026|consen 267 SILLVVDL----PKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPP 336 (774)
T ss_pred eeeeEEec----ccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCc
Confidence 66666542 22111111100 00 222333 2566778899988776432211 011100122333335
Q ss_pred CCCcEEEEEEEEcCCeeEEEEEEEEee
Q psy2775 175 TKDKGRYSVKVTNKEGTVESAANLNVD 201 (785)
Q Consensus 175 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 201 (785)
..+.|.|+|.+.+..|.........+.
T Consensus 337 h~~~~~~~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 337 HSHNGNYTLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred ccccCcceeeecccCccccccCcCccc
Confidence 678999999999998876665555554
No 420
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=82.34 E-value=91 Score=34.98 Aligned_cols=313 Identities=16% Similarity=0.183 Sum_probs=167.6
Q ss_pred CCCCCeEEE--EEEEcCCee----EEEEeeEEEeCCCCCCCceec--CCCceEeccCCcEEEEEEEeccCCCeEEEeECC
Q psy2775 80 KKREEGVYT--VVAKNREGE----AKMDIPVKVNTGKPEKPSILE--PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 151 (785)
Q Consensus 80 ~~~D~G~Y~--C~a~~~~~~----~~~~~~v~v~~~~~~~p~i~~--~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~g 151 (785)
....+|.|+ |.|...... +.......|. +..++.|.. .........|+.+.|.+.+.|.-...++..-.|
T Consensus 251 ~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk--~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~llYrf~I~G 328 (667)
T PRK14081 251 KEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVK--PYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKELLYRFIIKG 328 (667)
T ss_pred EeCCCccEEEEEEEeccCcccccccceEEEEEEe--cCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCceEEEEEECC
Confidence 356899995 677655432 2233334442 223344421 112233467999999999987655555555455
Q ss_pred EEcccceEEEeCCEEEEEEcccCCCCcEEEEEEEEcCC--e----eEEEEEEEEeecCCCCCCCCCCCCCCCccccccce
Q psy2775 152 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE--G----TVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225 (785)
Q Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~--g----~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (785)
..+.... -.....+.. .+..+|.|...+.-.. . .....+.+.|....
T Consensus 329 ~~~e~~~---Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~--------------------- 381 (667)
T PRK14081 329 KESEDSG---YIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS--------------------- 381 (667)
T ss_pred cEEeecc---ccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccC---------------------
Confidence 4432211 111223333 3457899987765222 1 12233455554321
Q ss_pred eeecCCCCCCCe-ee--ecCCcceeCCCCeEEEEEEEccCCCCeEE-E-EECCEEcccceEEEeCCEEEEEEccCCCCCC
Q psy2775 226 LQVNTGKPEKPS-IL--EPLHDVSITEGESAVLSVQVGGEPSPKVE-W-YKDGKLIKDRQITSEKNTHTLTLIQCSTKDK 300 (785)
Q Consensus 226 ~~~~~~~~~~p~-~~--~~~~~~~~~~G~~~~l~C~~~g~p~~~v~-W-~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~ 300 (785)
..|. +. .......+..|+.+.+.|.+.|.-...++ | .++|..+...... ....+.+ .+.-+
T Consensus 382 --------~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~---~~~~~~f---~P~~~ 447 (667)
T PRK14081 382 --------KEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYG---KNNWVNF---IPEEK 447 (667)
T ss_pred --------CCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecc---cccEEEE---EECCC
Confidence 1122 11 11223455679999999999765545444 3 3477766522111 1123333 34678
Q ss_pred eEEEEEEE--eCCC----ceEEEEEEEEeccccc-ee--eeccceeEeeCccEEEEEEEcCC-CCeEE--EEECCEEcCC
Q psy2775 301 GRYSVKVT--NKEG----TVESAANLNVDQGKAE-FI--KKLDDLEVKERENAVLEVEVTSD-KADVK--WFKDGQEIKT 368 (785)
Q Consensus 301 G~Y~C~~~--n~~g----~~~~~~~l~v~~~~~~-~~--~~~~~~~~~~g~~~~l~C~~~~~-~~~v~--W~~~~~~l~~ 368 (785)
|.|+-.+. +... .....+.+.|.+..|. .. ..+.......|+.+++.|.+.+. ...+. -+.+|..+..
T Consensus 448 G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~ 527 (667)
T PRK14081 448 GNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEE 527 (667)
T ss_pred eeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEE
Confidence 99988775 3222 2244577888875554 22 22334557889999999998874 33333 3356654422
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCceEEEEEEe--c--------cceEEEEEEEecCCcccc--cCCCeEEecCCcEEEE
Q psy2775 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP--D--------QETSAELNVVELPPEISV--PLQDVKVSRDEKASFE 436 (785)
Q Consensus 369 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n--------~~~~~~~~v~~~~~~~~~--~~~~~~v~~g~~~~l~ 436 (785)
.. + .... .+.+. +.-+|.|+-.+- | ......+.|.+..|.... ......+..|+.+++.
T Consensus 528 t~-Y--s~~~---~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~ 598 (667)
T PRK14081 528 TD-Y--IKNK---KYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFS 598 (667)
T ss_pred ee-c--cccc---eEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEE
Confidence 11 0 0111 13333 444788987763 2 233455556554333322 2355567789999999
Q ss_pred EEEeCCCc
Q psy2775 437 IELTKGDA 444 (785)
Q Consensus 437 C~~~~~~~ 444 (785)
....|+..
T Consensus 599 ~~~~gg~~ 606 (667)
T PRK14081 599 VKSEGGKD 606 (667)
T ss_pred EEccCCCc
Confidence 88887644
No 421
>PHA03286 envelope glycoprotein E; Provisional
Probab=82.26 E-value=13 Score=38.28 Aligned_cols=97 Identities=19% Similarity=0.097 Sum_probs=55.7
Q ss_pred CeEEEEEccCCCCCCceeEEEEEEcCCcceEEE-EEEEEEeeccCCCCCccccccccccccccccCCCcceeeeeecCcc
Q psy2775 612 ENIILELKEADSETDAGDYKVVATNELGSATHG-ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPV 690 (785)
Q Consensus 612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (785)
...-|+|.+++. .++|.|+-...|+.|....+ +-|.|...+..+|+..-....+.+
T Consensus 125 ~~~~L~I~nAt~-qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~---------------------- 181 (492)
T PHA03286 125 RGKELTILNASS-QNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPS---------------------- 181 (492)
T ss_pred CCCceEEeeccc-cccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcc----------------------
Confidence 334599999999 99999999999987764433 444454332222221111111110
Q ss_pred ccCCCcCCCCCCcEEeecCCeEEEEEEEe-c-CCCC---ceEEeECC
Q psy2775 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFK-A-LPPP---KAEWTVNG 732 (785)
Q Consensus 691 ~~~P~i~~~~~~~~~~~~g~~~~l~C~~~-g-~P~p---~i~W~~~~ 732 (785)
....+...........+|+++.|.-... + ...+ .|.|++-.
T Consensus 182 -~~~~f~l~ny~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y~p 227 (492)
T PHA03286 182 -TRVDLSLKNFKAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLFLP 227 (492)
T ss_pred -cceEEEEecccceEecCCCeEEEEEEEeecccCCCceEEEEEEEec
Confidence 1112222344555677899998887765 3 2233 68898643
No 422
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=82.03 E-value=5.2 Score=31.47 Aligned_cols=68 Identities=18% Similarity=0.347 Sum_probs=43.1
Q ss_pred EEEEEEE-eccCCCeEEEeE--CCEEcccceEEEeCC----EEEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEE
Q psy2775 131 AVLSVQV-GGEPSPKVEWYK--DGKLIKDRQITSEKN----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 199 (785)
Q Consensus 131 v~l~C~~-~g~p~~~v~W~~--~g~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 199 (785)
+.-+|.+ .|.|++.|+|.- +|.. ........++ .+.+.+......|.-..+|.+.+.......++.|+
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 5668985 789999999974 3332 1111111121 24566777788899999999988754444445554
No 423
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.16 E-value=9.3 Score=39.48 Aligned_cols=37 Identities=30% Similarity=0.305 Sum_probs=25.2
Q ss_pred eEEEEEccCCCCCCceeEEEEEEcCCcceE--EEEEEEEE
Q psy2775 613 NIILELKEADSETDAGDYKVVATNELGSAT--HGARVTVD 650 (785)
Q Consensus 613 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~ 650 (785)
+.+|.|.+++. +|+|.|+-.+...-.... ....|.|.
T Consensus 123 n~tl~l~~a~~-~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARE-TDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccc-cCCceEEEEecCCCCchhheEEEEEEec
Confidence 34599999999 999999999764433333 33444444
No 424
>PHA03240 envelope glycoprotein M; Provisional
Probab=75.31 E-value=4.6 Score=36.62 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=43.1
Q ss_pred CceEecCCCeEEEEEEEEecCCCeeEEEECC-----------EEc----c-C------------CCCEEEeecCCccceE
Q psy2775 20 KPVYAEENSEVTLEVRLVAVPEPDLLWYYNG-----------EPL----Q-E------------TDEVVFSDQSDMHSYV 71 (785)
Q Consensus 20 ~~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~-----------~~~----~-~------------~~~~~~~~~~~~~~~~ 71 (785)
-.+.+++|++|+|.-.---.|.-.+.|++.. .++ + . +.++.+.. ..
T Consensus 31 ievt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C------~N 104 (258)
T PHA03240 31 EEHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYEC------HN 104 (258)
T ss_pred eecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEe------cc
Confidence 3578899999999865322466789999821 111 0 0 11111111 23
Q ss_pred EEEEEcccCCCCCeEEEEEEEcC
Q psy2775 72 SIVTIKSIKKREEGVYTVVAKNR 94 (785)
Q Consensus 72 ~~L~i~~~~~~D~G~Y~C~a~~~ 94 (785)
++|.|.++..+|.|.| |+-.+.
T Consensus 105 stL~i~~vn~sd~~nY-cr~k~~ 126 (258)
T PHA03240 105 STLIIAHLNLSDAGEY-CRKKCP 126 (258)
T ss_pred ceEEEEEEeecCcchh-hhccCC
Confidence 6799999999999999 555543
No 425
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=75.07 E-value=8.4 Score=40.94 Aligned_cols=78 Identities=29% Similarity=0.509 Sum_probs=14.1
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCeeEEE-EeeEEEeCCCCC----CCc--e----------ecCCCceEeccCCcEEEE
Q psy2775 72 SIVTIKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPE----KPS--I----------LEPLHDVSITEGESAVLS 134 (785)
Q Consensus 72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~-~~~v~v~~~~~~----~p~--i----------~~~~~~~~~~~G~~v~l~ 134 (785)
+.|.|.+++.+|+|.|.-...+..+.... .+.|.|....+. +|. + ..........+|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 34999999999999999998876654433 344555432211 121 1 122345566789998887
Q ss_pred EEEecc--C----CCeEEEeE
Q psy2775 135 VQVGGE--P----SPKVEWYK 149 (785)
Q Consensus 135 C~~~g~--p----~~~v~W~~ 149 (785)
-.+... . ..+|.||+
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
Confidence 776421 1 23799986
No 426
>PHA03281 envelope glycoprotein E; Provisional
Probab=74.66 E-value=26 Score=37.12 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=51.9
Q ss_pred EEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEEEeeccC--CCCCccccccccccccccccCCCcceeeeeecCccc
Q psy2775 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG--RPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE 691 (785)
Q Consensus 614 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (785)
+.|.|.+++. .++|.|+-......|....+ .+.|.+.+.+ ..+...+ .. ..
T Consensus 298 ~vL~I~nAT~-~naGVYtly~rg~~G~s~~s-vfLVtVkg~~~~rip~p~V--tp-----------------------k~ 350 (642)
T PHA03281 298 GVLKFEHMEA-HHAGVYIWNLQGSDGENMYA-TFLVKLKGDEENHIDLPAV--TP-----------------------KP 350 (642)
T ss_pred CeeEEEeccc-ccceeEEEEecCCCCcceeE-EEEEEecCCcccCCCCCCc--cc-----------------------cc
Confidence 3699999999 99999999988776754442 3334433222 1111110 00 00
Q ss_pred cCCCcCCCCCCcEEeecCCeEEEEEEEecC--CCC---ceEEeEC
Q psy2775 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKAL--PPP---KAEWTVN 731 (785)
Q Consensus 692 ~~P~i~~~~~~~~~~~~g~~~~l~C~~~g~--P~p---~i~W~~~ 731 (785)
....+....-......+|+++.|....... ..| .|.|++-
T Consensus 351 hga~F~vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 351 KGAEFHMWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred cCceEEEeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEEe
Confidence 112222223344556789999888886543 333 7889864
No 427
>PHA03189 UL14 tegument protein; Provisional
Probab=73.27 E-value=30 Score=33.71 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCceEecCCCeEEEEEEEEec--CCCeeE-----EEE----------CCEEccC-------CCCEEEeecCCccceEEEE
Q psy2775 19 TKPVYAEENSEVTLEVRLVAV--PEPDLL-----WYY----------NGEPLQE-------TDEVVFSDQSDMHSYVSIV 74 (785)
Q Consensus 19 ~~~~~v~~G~~v~l~C~~~g~--p~~~i~-----W~~----------~~~~~~~-------~~~~~~~~~~~~~~~~~~L 74 (785)
|.++-+.+|+.+++.|.+..+ |..+|. |-. .|..+.+ ..+..+.+-+-.+. -+|
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~--ltL 136 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQR--LTL 136 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeE--EEE
Confidence 677889999999999999543 443332 211 1111111 11233333332222 235
Q ss_pred EEcccCCCCCeEEEEEEEcCCeeEEEE
Q psy2775 75 TIKSIKKREEGVYTVVAKNREGEAKMD 101 (785)
Q Consensus 75 ~i~~~~~~D~G~Y~C~a~~~~~~~~~~ 101 (785)
++ ++..+-+|.|.|...|........
T Consensus 137 tF-~v~t~taG~Y~CvLrN~tHglv~~ 162 (348)
T PHA03189 137 TF-RVSTSTAGMYECVLRNETHGLVLQ 162 (348)
T ss_pred EE-EEEecccceEEEEeccccceeeeE
Confidence 54 466778999999999876554443
No 428
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=72.80 E-value=13 Score=29.26 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=42.1
Q ss_pred eEEEEEEE-EecCCCeeEEEECCEEccCCCCEE-EeecCCccceEEEEEEcccCCCCCeEEEEEEEcCCe
Q psy2775 29 EVTLEVRL-VAVPEPDLLWYYNGEPLQETDEVV-FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96 (785)
Q Consensus 29 ~v~l~C~~-~g~p~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~~~~~ 96 (785)
.+.-.|.+ .|.|+..|.|.-+ +......+ ....++.....+.+.+......|.-.-+|.+.+...
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 35568985 7889999999832 21111111 122233344456677888888899999999998643
No 429
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=72.03 E-value=1.8e+02 Score=32.83 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=130.4
Q ss_pred eCCCCeEEEEEEEccCCCCeEEEEECCEEcccceEEEeCCEEEEEEccCCCCCCeEEEEEEEeC--CC----ceEEEEEE
Q psy2775 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK--EG----TVESAANL 320 (785)
Q Consensus 247 ~~~G~~~~l~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~--~g----~~~~~~~l 320 (785)
...|+.+.|...+.|.-...++..-.|..+...... ....+. ..+..+|.|.-.+.-. .. .....+.+
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~---~~n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f 375 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYI---RNNIYT---WKPKIAGKYSITLWVKDISSKGEYEDKSSIDY 375 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeecccc---ccceEE---EeeCCCceEEEEEEEEcCcCcccccceEEEEE
Confidence 357999999999987666666665566544311111 111232 3445689998877522 11 12334556
Q ss_pred EEecc--ccc-ee--eeccceeEeeCccEEEEEEEcCC-CCeEEE--EECCEEcCCCCcEEEEEcCcEEEEEEcCCCCCC
Q psy2775 321 NVDQG--KAE-FI--KKLDDLEVKERENAVLEVEVTSD-KADVKW--FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392 (785)
Q Consensus 321 ~v~~~--~~~-~~--~~~~~~~~~~g~~~~l~C~~~~~-~~~v~W--~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 392 (785)
.+... .|. +. .......+..|+.+.+.|.+.+. ...+.. .++|..+.... -+....+.+. +.-
T Consensus 376 ~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~------Y~~~~~~~f~---P~~ 446 (667)
T PRK14081 376 TIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID------YGKNNWVNFI---PEE 446 (667)
T ss_pred EEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee------cccccEEEEE---ECC
Confidence 56543 222 21 12223467789999999999875 333333 35776554221 1111123333 355
Q ss_pred ceEEEEEEe--c--------cceEEEEEEEecCCc-ccc--cCCCeEEecCCcEEEEEEEeCC-CceE--EEEECCEEcc
Q psy2775 393 EGEYTCSLP--D--------QETSAELNVVELPPE-ISV--PLQDVKVSRDEKASFEIELTKG-DALV--KWYKDGKEIA 456 (785)
Q Consensus 393 ~G~Y~C~a~--n--------~~~~~~~~v~~~~~~-~~~--~~~~~~v~~g~~~~l~C~~~~~-~~~i--~W~~~~~~~~ 456 (785)
+|.|+-.+. + ......+.|....|. +.. .+.......|+.+++.|.+.++ ...+ .-+.+|..+.
T Consensus 447 ~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~ 526 (667)
T PRK14081 447 KGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVE 526 (667)
T ss_pred CeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEE
Confidence 899988763 2 234566777765554 332 2333457789999999999985 3333 3344666553
Q ss_pred cCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEee--c-----CcceeEEEEEEEcC
Q psy2775 457 FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD--T-----GDKESKATLTVEAP 506 (785)
Q Consensus 457 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n--~-----g~~~~~~~l~V~~~ 506 (785)
..+-. ....+++. +.-+|.|+-.+.- . -.....+.+.|..+
T Consensus 527 ~t~Ys------~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~ 574 (667)
T PRK14081 527 ETDYI------KNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA 574 (667)
T ss_pred Eeecc------ccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC
Confidence 22211 11234433 4568999988753 2 12234566667654
No 430
>PHA03189 UL14 tegument protein; Provisional
Probab=69.54 E-value=32 Score=33.55 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=51.2
Q ss_pred eeeeeeecCeEEEEEEEecC--CCCceE-----EEe----------CCEEecCCCCeeEE-----e----eCCeEEEEEc
Q psy2775 566 EEKTVKEKGTIRLMAKVKAS--PAPSIV-----WFR----------NNKPLLSSPKKREI-----F----DGENIILELK 619 (785)
Q Consensus 566 ~~~~v~~g~~v~l~C~~~g~--P~p~v~-----W~~----------~~~~i~~~~~~~~~-----~----~~~~~~L~i~ 619 (785)
.+..+..|+.+++.|.+-.. |..+|+ |-- .|..+.++...++. + .....+|+++
T Consensus 60 AP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~ 139 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFR 139 (348)
T ss_pred CccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEE
Confidence 35567899999999998654 444432 210 22233222221111 1 1223567776
Q ss_pred cCCCCCCceeEEEEEEcCC-cceEEEEEEEEEeecc
Q psy2775 620 EADSETDAGDYKVVATNEL-GSATHGARVTVDVEKV 654 (785)
Q Consensus 620 ~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~ 654 (785)
-++ +-+|.|.|+..|+. |-....+.|.-+++.-
T Consensus 140 v~t--~taG~Y~CvLrN~tHglv~~rf~ivtdvetL 173 (348)
T PHA03189 140 VST--STAGMYECVLRNETHGLVLQRFVIVTDVETL 173 (348)
T ss_pred EEe--cccceEEEEeccccceeeeEEeeeeeehhhh
Confidence 544 68999999999974 6666666666665543
No 431
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=65.17 E-value=6.6 Score=42.48 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=24.5
Q ss_pred eEEEEEEEEecCCCeeEEEECCEEccCCCCEEEeecCCccceEEEEEEcccCCCC-CeEEEEEEE--c-CCeeEEEEeeE
Q psy2775 29 EVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE-EGVYTVVAK--N-REGEAKMDIPV 104 (785)
Q Consensus 29 ~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~a~--~-~~~~~~~~~~v 104 (785)
.+.|.|.. .....+.|..-.... ...........+ ...|.|..-...- ...|...+. + ........+.|
T Consensus 2 ~~~~~C~~--~~~~~y~W~~~~~~~---~~~~~~~~~~~~--~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v 74 (440)
T PF02010_consen 2 HVSLNCND--ASTVTYNWTVFSGPS---NSIVQDMDNSSN--TPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTV 74 (440)
T ss_dssp ----------------BEEEEES-T---T-EEESTTT--S--SSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEE
T ss_pred Cccccccc--ccceEEEEEEEecCC---cCccccccccCC--ceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEE
Confidence 46789943 345678997532111 111111111011 1347787766532 235667776 2 23334555666
Q ss_pred EEeCCCCCCCceecCCCceEeccCCcEEEEEEEeccC-------CCeEEEeEC
Q psy2775 105 KVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP-------SPKVEWYKD 150 (785)
Q Consensus 105 ~v~~~~~~~p~i~~~~~~~~~~~G~~v~l~C~~~g~p-------~~~v~W~~~ 150 (785)
.|.. .+..+.|.. .....+..++.+.|....+-.| ...+.|...
T Consensus 75 ~V~~-s~l~~~I~g-G~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~ 125 (440)
T PF02010_consen 75 TVEP-SPLVAVIKG-GSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCT 125 (440)
T ss_dssp EEE--------------------------------------------------
T ss_pred EEee-ccceeEEcC-CccceeecCceEEEeeEEEecccccccCCceEEEEEEe
Confidence 6653 112222222 2223333445677776543222 246788753
No 432
>KOG0200|consensus
Probab=64.99 E-value=86 Score=35.52 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=59.1
Q ss_pred EEEEEcccCCCCCeEEEEEEEcCCeeEEEEeeEEEeCCCCCCCcee-cCCCceEeccCCcEEEEEEEeccCCCeEEEeEC
Q psy2775 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD 150 (785)
Q Consensus 72 ~~L~i~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~v~~~~~~~p~i~-~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~ 150 (785)
..+.+..+...|.|.|+|.+.+ ......+. ......+.+. ..+.......+....+ +...+.+.+.|...
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 83 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN----INLIISLD--DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGTN 83 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec----CceeeEee--cccCcccccccCCCCCcceeeccccee---eeecCCCcceeeee
Confidence 3477888999999999999999 11122222 1111111111 1122333344555555 22233667888764
Q ss_pred CEEc-----ccc--------------eEEEeCCEEEEEEcccCCCCcEEEEEEEEc
Q psy2775 151 GKLI-----KDR--------------QITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187 (785)
Q Consensus 151 g~~~-----~~~--------------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 187 (785)
.... ... ... ......+.+.++...+.|.|.|....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 84 LEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred ecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 4211 000 001 23455788899999999999998865
No 433
>PHA03112 IL-18 binding protein; Provisional
Probab=64.46 E-value=29 Score=29.77 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=43.5
Q ss_pred eeeecCeEEEEEEEecC-CCC-ceEEEeCC-EEecC-------------CCCeeEEeeCCeEEEEEccCCCCCCceeEEE
Q psy2775 569 TVKEKGTIRLMAKVKAS-PAP-SIVWFRNN-KPLLS-------------SPKKREIFDGENIILELKEADSETDAGDYKV 632 (785)
Q Consensus 569 ~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~-~~i~~-------------~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C 632 (785)
..++|+++.|+|.+-++ |.- -+.|..++ +...+ +...+....+-...|++.+++.+-+.-..+|
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC 113 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC 113 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence 35679999999999877 653 68999765 32221 1111111123345677777775224447888
Q ss_pred EEEcCCcce
Q psy2775 633 VATNELGSA 641 (785)
Q Consensus 633 ~a~n~~g~~ 641 (785)
+-....|..
T Consensus 114 VL~D~~~~~ 122 (141)
T PHA03112 114 VLMDLDGPI 122 (141)
T ss_pred EEecCCchh
Confidence 877665533
No 434
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=64.04 E-value=58 Score=24.70 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=37.6
Q ss_pred eeecCeEEEEEEEecC-CCCceEEEeCCEEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEE--EEEEcCCcceEEEEE
Q psy2775 570 VKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK--VVATNELGSATHGAR 646 (785)
Q Consensus 570 v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~--C~a~n~~g~~~~~~~ 646 (785)
...|+.+.|.....+. ....+.|...+...... ....... ...|.|. ..+.|..|+......
T Consensus 11 ~~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~---------~~~~~~y------~~~G~y~v~l~v~n~~g~~~~~~~ 75 (79)
T smart00089 11 GVAGESVTFTATSSDDGSIVSYTWDFGDGTSSTG---------PTVTHTY------TKPGTYTVTLTVTNAVGSASATVT 75 (79)
T ss_pred CCCCCEEEEEEECCCCCCeEEEEEEeCCCCccCC---------CCEEEEe------CCCcEEEEEEEEEcCCCcEEEEEE
Confidence 3368899999887763 34578897644322111 1111222 4567776 446688886655555
Q ss_pred EEE
Q psy2775 647 VTV 649 (785)
Q Consensus 647 l~V 649 (785)
+.|
T Consensus 76 i~v 78 (79)
T smart00089 76 VVV 78 (79)
T ss_pred EEE
Confidence 554
No 435
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=54.20 E-value=68 Score=23.61 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=36.0
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEeCC-EEecCCCCeeEEeeCCeEEEEEccCCCCCCceeEE--EEEEcCCcceE
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN-KPLLSSPKKREIFDGENIILELKEADSETDAGDYK--VVATNELGSAT 642 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~-~~i~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~--C~a~n~~g~~~ 642 (785)
...+..|+.++|...........+.|..++ ... ..+...+.+. ...|.|. ..|.|..|...
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~---------~~~~~~t~ty------~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTV---------STGSSVTHTY------SSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SSESEE---------ECSSEEEEEE------SSSEEEEEEEEEEETTSEEE
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECCCCcc---------ccCCCEEEEc------CCCeEEEEEEEEEECCCCcC
Confidence 346788999999998832233489999887 221 2222333333 4568876 45557776543
No 436
>PHA03112 IL-18 binding protein; Provisional
Probab=54.17 E-value=35 Score=29.31 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=19.3
Q ss_pred ecCCcEEEEEEEeCC--C-ceEEEEECC
Q psy2775 428 SRDEKASFEIELTKG--D-ALVKWYKDG 452 (785)
Q Consensus 428 ~~g~~~~l~C~~~~~--~-~~i~W~~~~ 452 (785)
.+++++.|+|.+-+. . .-+.|.+++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 469999999999863 2 347899765
No 437
>PHA03240 envelope glycoprotein M; Provisional
Probab=53.00 E-value=19 Score=32.85 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=51.0
Q ss_pred eeeeeecCeEEEEEEEecCCCCceEEEe-------C-C---EEe--------------cC-CCCeeEEeeCCeEEEEEcc
Q psy2775 567 EKTVKEKGTIRLMAKVKASPAPSIVWFR-------N-N---KPL--------------LS-SPKKREIFDGENIILELKE 620 (785)
Q Consensus 567 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~-------~-~---~~i--------------~~-~~~~~~~~~~~~~~L~i~~ 620 (785)
++.+++|++|+|--.---.|--.+.||+ + | .++ .. .....+.+.=.+++|.|-+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 6788999999997543223556899998 1 1 111 00 0012233334567899999
Q ss_pred CCCCCCceeEEEEEEcCCcce----EEEEEEEEE
Q psy2775 621 ADSETDAGDYKVVATNELGSA----THGARVTVD 650 (785)
Q Consensus 621 ~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~V~ 650 (785)
+.. +|+|.|.-.-....|.. .+-.+|.|.
T Consensus 112 vn~-sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 112 LNL-SDAGEYCRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred Eee-cCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence 999 99999954444344443 335677774
No 438
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=50.35 E-value=34 Score=24.82 Aligned_cols=21 Identities=43% Similarity=0.873 Sum_probs=14.4
Q ss_pred eCCCCeEEEEEEEccCCCCeEEEEE
Q psy2775 247 ITEGESAVLSVQVGGEPSPKVEWYK 271 (785)
Q Consensus 247 ~~~G~~~~l~C~~~g~p~~~v~W~~ 271 (785)
+..|+.++|. |.+...+.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 3457777776 55556899984
No 439
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=47.60 E-value=1.1e+02 Score=22.49 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=38.1
Q ss_pred eEEEeECCEEcccceEEEeCCE-EEEEEcccCCCCcEEEEEEEEcCCeeEEEEEEEEe
Q psy2775 144 KVEWYKDGKLIKDRQITSEKNT-HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200 (785)
Q Consensus 144 ~v~W~~~g~~~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 200 (785)
...|+++|+.+..-.+...++. .+..-..+.....|.+++.+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 5789999998765544333222 23333344557999999999998887766666554
No 440
>KOG0200|consensus
Probab=45.13 E-value=1.1e+02 Score=34.61 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=26.5
Q ss_pred eCCeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEE
Q psy2775 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646 (785)
Q Consensus 610 ~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 646 (785)
.+....+.+.++.. .+.|.|.|.+.+..+.......
T Consensus 113 ~~~~~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (609)
T KOG0200|consen 113 DGTFESGLIYNVSL-TEAGEYLCWTGRTVGDGPNKAF 148 (609)
T ss_pred cCceEeeeeeccCh-hhcceeeccCCCcccccccceE
Confidence 34567799999999 9999999999874444433333
No 441
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=39.28 E-value=1.5e+02 Score=21.75 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=39.8
Q ss_pred eEEEEECCEEcccceEEEeC-CEEEEEEccCCCCCCeEEEEEEEeCCCceEEEEEEEE
Q psy2775 266 KVEWYKDGKLIKDRQITSEK-NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322 (785)
Q Consensus 266 ~v~W~~~~~~l~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v 322 (785)
...|+++++.+....+...+ .-.+.+-..+.+...|.+++.+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 45799999988744443332 2334555566668899999999998888777666654
No 442
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=37.62 E-value=36 Score=36.79 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=26.1
Q ss_pred cEEEEEEEeccCCCeEEEeECCEEcccceEEE--eCCEEEEEEcccCC-CCcEEEEEEEE--cCC-eeEEEEEEEEeec
Q psy2775 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS--EKNTHTLTLIQCST-KDKGRYSVKVT--NKE-GTVESAANLNVDP 202 (785)
Q Consensus 130 ~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~--~~~~~~L~i~~~~~-~d~G~Y~C~a~--n~~-g~~~~~~~l~V~~ 202 (785)
.+.|.|.. .-...+.|..-........... ......|.|..... .....|...+. +.. ......+.|.|..
T Consensus 2 ~~~~~C~~--~~~~~y~W~~~~~~~~~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~ 78 (440)
T PF02010_consen 2 HVSLNCND--ASTVTYNWTVFSGPSNSIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEP 78 (440)
T ss_dssp ----------------BEEEEES-TT-EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE-
T ss_pred Cccccccc--ccceEEEEEEEecCCcCccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEee
Confidence 35678933 2346889975221111110000 12234688887666 33456777777 222 2344456666653
No 443
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=33.77 E-value=93 Score=22.57 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=33.2
Q ss_pred EEEEEEeCCCceEEEEECCEEcccCCCEEEEEeCcEEEEEEccCCCCCcEEEEEEEeecCcceeEEEEEEEcCc
Q psy2775 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPA 507 (785)
Q Consensus 434 ~l~C~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~g~~~~~~~l~V~~~~ 507 (785)
+|+|... ...++.||-||..+..-... ++++.. -.++|+|+-... ...++-++-...|
T Consensus 2 tltC~s~-~sLPiswYcN~TRLlRlt~~---------Tlt~~~----ltcNFtCV~qSG--h~hSiWItW~~qP 59 (71)
T PF11049_consen 2 TLTCPSN-ASLPISWYCNGTRLLRLTQQ---------TLTVVT----LTCNFTCVGQSG--HRHSIWITWYAQP 59 (71)
T ss_pred ceecCCC-CCCcccEEECCceeeeecCC---------eEeeee----eeEEeeecCCCC--CCceEEEEEcCch
Confidence 4667543 24459999999877432221 344422 358888976542 4455566554443
No 444
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=27.26 E-value=2.7e+02 Score=20.89 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=19.2
Q ss_pred cCCCeEEEEEEEEe-cCCCeeEEEECCE
Q psy2775 25 EENSEVTLEVRLVA-VPEPDLLWYYNGE 51 (785)
Q Consensus 25 ~~G~~v~l~C~~~g-~p~~~i~W~~~~~ 51 (785)
..|.++.|.....+ .....+.|.+.+.
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg 39 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDG 39 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCC
Confidence 37889999988754 2346788977554
No 445
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=26.95 E-value=1.2e+02 Score=22.31 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=22.1
Q ss_pred ceEecCCCeEEEEEEEEecCCCeeEEEECC
Q psy2775 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNG 50 (785)
Q Consensus 21 ~~~v~~G~~v~l~C~~~g~p~~~i~W~~~~ 50 (785)
...+..|+.++|...........+.|..++
T Consensus 5 ~~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 456778999999998733344689999988
No 446
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=26.55 E-value=2.9e+02 Score=20.91 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=18.8
Q ss_pred cCeEEEEEEEecC-CCCceEEEeCCE
Q psy2775 573 KGTIRLMAKVKAS-PAPSIVWFRNNK 597 (785)
Q Consensus 573 g~~v~l~C~~~g~-P~p~v~W~~~~~ 597 (785)
|+.++|.....+. ....+.|..++.
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg 39 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDG 39 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCC
Confidence 8899999887654 345899988664
No 447
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=23.12 E-value=5.6e+02 Score=23.07 Aligned_cols=147 Identities=7% Similarity=0.050 Sum_probs=69.0
Q ss_pred EEEEEEEccCCCCeEEEEECCEEccc------ceEEEeCC------EEEEEEccCCCCCCeEEEEEEEeC-----CCceE
Q psy2775 253 AVLSVQVGGEPSPKVEWYKDGKLIKD------RQITSEKN------THTLTLIQCSTKDKGRYSVKVTNK-----EGTVE 315 (785)
Q Consensus 253 ~~l~C~~~g~p~~~v~W~~~~~~l~~------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~n~-----~g~~~ 315 (785)
+.-.|.+..+....+.|+.+...+.- ......++ .++|.+.=+..-.--..+|.+--. .+...
T Consensus 4 l~A~CtVetn~~ls~fWkigk~svDaf~rgtthTR~mrngvpvyalVstlk~pw~nviplt~ITCaaC~~nf~~g~~~dl 83 (226)
T PF05955_consen 4 LEASCTVETNSGLSFFWKIGKASVDAFNRGTTHTRLMRNGVPVYALVSTLKVPWLNVIPLTKITCAACPTNFVAGDENDL 83 (226)
T ss_pred eeeEEEEEecCceEEEEEeCCeeEeeecCCceeeeeeeCcEehhheeehhcccccccccccEEEehhcchhhcccCcCCc
Confidence 45688888777788999987665541 11111111 122333322222234567776421 11111
Q ss_pred EEEEEEEeccccceeeeccceeEe-eCccEEEEEEEcC--CCCeEEEEECCEEcCCCCcEEE---EEcCc----EEEEEE
Q psy2775 316 SAANLNVDQGKAEFIKKLDDLEVK-ERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTI---EKKGT----IRKLLI 385 (785)
Q Consensus 316 ~~~~l~v~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~---~~~~~----~~~l~i 385 (785)
+.-..+...-|........+... .|+ .-.|..+. ..|.++|......+..+.-... ...|. .+.+.|
T Consensus 84 -~sCt~ksttIPCpgqqrthIfFs~kg~--rAvCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~ 160 (226)
T PF05955_consen 84 -NSCTTKSTTIPCPGQQRTHIFFSAKGH--RAVCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRI 160 (226)
T ss_pred -ceeEeecccccCCCcceEEEEEeccCc--EEEEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeec
Confidence 11111221112211111112222 233 33477765 5889999877666655442111 11221 223556
Q ss_pred cCCCCCCceEEEEEEec
Q psy2775 386 RNISVHDEGEYTCSLPD 402 (785)
Q Consensus 386 ~~~~~~d~G~Y~C~a~n 402 (785)
...+-.++-.|.|.+.-
T Consensus 161 ~R~~G~~~~~y~c~~~~ 177 (226)
T PF05955_consen 161 PRAEGRDNVDYLCEIRA 177 (226)
T ss_pred ccCCCCCcccEEecccc
Confidence 66666667778887653
No 448
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=21.88 E-value=1.4e+02 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEcccCCCCCeEEEEEEEcCC
Q psy2775 73 IVTIKSIKKREEGVYTVVAKNRE 95 (785)
Q Consensus 73 ~L~i~~~~~~D~G~Y~C~a~~~~ 95 (785)
.|+|.+.+.+|+|.|.-++.-..
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECC
Confidence 49999999999999999987443
No 449
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=21.63 E-value=2.2e+02 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.9
Q ss_pred CeEEEEEccCCCCCCceeEEEEEEcCCcceEEEEEEEE
Q psy2775 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649 (785)
Q Consensus 612 ~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 649 (785)
....|.|.+.+. +|+|.|.-++.-+......-+.+.|
T Consensus 122 ~~~lL~i~~p~~-~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 122 NGVLLRIRNPRP-EDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred cceEEEeCCCCc-ccceEEEEEEEECCCCCCcEEEEee
Confidence 345699999999 9999999999877655554455444
Done!