RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2775
(785 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 379 bits (976), Expect = e-123
Identities = 148/654 (22%), Positives = 248/654 (37%), Gaps = 106/654 (16%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP F + + V A +TL+ ++ PE + WY L+ ++++ S V
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
I + + G YT A+N G + + + PS L DV T G
Sbjct: 65 ----INKVDHSDVGEYTCKAENSVGAVASSAVLVI-KERKLPPSFARKLKDVHETLGFPV 119
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
++ G +V WYKDG+L+K + Q + N TL ++Q G+Y+ +N
Sbjct: 120 AFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP 179
Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
GT S+A L + P V +
Sbjct: 180 LGTASSSAKLTLSE-----------------------------HEVPPFFDLKPVSVDLA 210
Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSV 305
GES V G K+ W KD + I+ ++T +NT TLT+++ + D G+Y+
Sbjct: 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC 270
Query: 306 KVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVTSD-KADVKWFKDG 363
+N G +A L V Q FIKKL+ VK+ E+ E ++ + V W+KD
Sbjct: 271 YASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329
Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
EI+ S K + ++ L + N+SV D G+YTC + +S L V E PP
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFR 388
Query: 420 VPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA 477
V+ + E EL G V W+KD +E+ + + + + I +
Sbjct: 389 KKPHPVETLKGADVHLECELQ-GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 447
Query: 478 GLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPD 536
D GEY C+ D G ++T++AP
Sbjct: 448 DSADIGEYQCKASNDVGSDTCVGSITLKAP------------------------------ 477
Query: 537 IQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN 596
P F+++ + + ++L A ++ + S+ WF++
Sbjct: 478 ----------------------PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK 515
Query: 597 KPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
++ I + L+ A+ +AG Y NE G+ A ++V
Sbjct: 516 GEIVRESDNIWISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSV 568
Score = 341 bits (875), Expect = e-108
Identities = 130/647 (20%), Positives = 226/647 (34%), Gaps = 143/647 (22%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 165
G E P +EPL V GE L +V G P ++ WYK+ ++ ++ + N
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
+L + + D G Y+ K N G V S+A L +
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVI------------------------- 95
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQIT 282
+ PS L DV T G ++ G +V WYKDG+L+K + Q +
Sbjct: 96 ----KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS 151
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKKLDDLEVKE 340
N TL ++Q G+Y+ +N GT S+A L + + F K +++
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
E+ + VT + W KD +EI+ + L + ++ D G+YTC
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 399 ---SLPDQETSAELNVVELPPEISVPLQDVK-VSRDEKASFEIELTKGD--ALVKWYKDG 452
SA+L V E PP L+ + V +DE +E ++ G V WYKD
Sbjct: 272 ASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDE 329
Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFL 511
EI S +S L +++ +ED+G+Y+C G S +L V+ P
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP----- 384
Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
P+F ++
Sbjct: 385 -----------------------------------------------PVFRKKPHPVETL 397
Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 631
+ + L +++ +P + W ++ + L S K + + + + + D G+Y+
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV-DSADIGEYQ 456
Query: 632 VVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE 691
A+N++GS T +T+
Sbjct: 457 CKASNDVGSDTCVGSITLKA---------------------------------------- 476
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
P ++ GE+++++ + P W + IV
Sbjct: 477 -PPRFV-KKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE 521
Score = 337 bits (866), Expect = e-106
Identities = 122/511 (23%), Positives = 207/511 (40%), Gaps = 56/511 (10%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+PP+F++K K V+ V E R+ + WY +GE L++ + S ++
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA 157
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ + I + G Y A N G A + ++ P V + G
Sbjct: 158 T----LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS-EHEVPPFFDLKPVSVDLALG 212
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
ES V G K+ W KD + I+ ++T +NT TLT+++ + D G+Y+
Sbjct: 213 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 272
Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
+N G +A L V E P ++ L
Sbjct: 273 SNVAGKDSCSAQLGVQ--------------------------------EPPRFIKKLEPS 300
Query: 246 SI-TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTKDKG 301
I + E ++GG P KV WYKD I++ +++ ++ L + S +D G
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 302 RYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWF 360
Y+ + N G+ S+ +L V + F KK +E + + LE E+ V W
Sbjct: 361 DYTCEAHNAAGSASSSTSLKV-KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 361 KDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPP 416
KD +E+++ KK I + + + I N+ D GEY C + + + PP
Sbjct: 420 KDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA-PP 478
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAF-SENVTLSIDGKKQKLI 473
L D+ E+ + + G V W+KD EI S+N+ +S L
Sbjct: 479 RFVKKLSDISTVVGEEVQLQATIE-GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQ 537
Query: 474 IFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
A +AG+Y+C++ + G +E ATL+V
Sbjct: 538 FSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 304 bits (781), Expect = 3e-94
Identities = 128/614 (20%), Positives = 203/614 (33%), Gaps = 156/614 (25%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
G E P +EPL V GE L +V G P ++ WYK+ ++ ++ + N
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKKLDDLEVKERENAV 345
+L + + D G Y+ K N G V S+A L + + F +KL D+
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVA 120
Query: 346 LEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SL 400
E + V W+KDG+ +K + + L I G+Y C L
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 401 PDQETSAELNVV--ELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIA 456
+SA+L + E+PP + V ++ E +F+ +T G A + W KD +EI
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIR 239
Query: 457 FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLP 515
N +++ L + DAG+Y+C + G A L V+ P
Sbjct: 240 PGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--------- 290
Query: 516 SVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE-EKTVKEKG 574
P FI++ E + VK+
Sbjct: 291 -------------------------------------------PRFIKKLEPSRIVKQDE 307
Query: 575 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 634
R K+ SP ++W+++ + S K R F +LE+ E D+GDY A
Sbjct: 308 HTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE-DSGDYTCEA 366
Query: 635 TNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAP 694
N GSA+ + V P
Sbjct: 367 HNAAGSASSSTSLKVKE-----------------------------------------PP 385
Query: 695 VIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR-------------- 740
V P P V KG D+ +E + PP + W + + K+
Sbjct: 386 VFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444
Query: 741 -----------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD 771
+K F+KKL D+ E L+ +
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGA 504
Query: 772 -KADVKWFKNNSLI 784
V WFK+ I
Sbjct: 505 EPISVAWFKDKGEI 518
Score = 224 bits (572), Expect = 2e-64
Identities = 91/510 (17%), Positives = 154/510 (30%), Gaps = 144/510 (28%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
FI+ L+ +E E L+ +V + + W+K+ +++++ ++ K + L+I
Sbjct: 8 FIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINK 67
Query: 388 ISVHDEGEYTC----SLPDQETSAELNVVE--LPPEISVPLQDVKVSRDEKASFEIELTK 441
+ D GEYTC S+ +SA L + E LPP + L+DV + +FE +
Sbjct: 68 VDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRING 127
Query: 442 GDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKA 499
+ L V WYKDG+ + N+ S L I G+Y+C G S A
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSA 187
Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
LT+ V P
Sbjct: 188 KLTLSEHEV-------------------------------------------------PP 198
Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
F + + + V + I W ++N+ + + L +
Sbjct: 199 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 258
Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPR 679
+ DAG Y A+N G + A++
Sbjct: 259 KVTKG-DAGQYTCYASNVAGKDSCSAQLG------------------------------- 286
Query: 680 QSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSK 739
V+ P P +VK+ E + E + P K W + T I S
Sbjct: 287 ----------VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS 336
Query: 740 R-------------------------------------------VKGKAEFIKKLDDLEV 756
+ VK F KK +E
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVET 396
Query: 757 KERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ + LE E+ V W K+ ++
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELR 426
Score = 154 bits (390), Expect = 1e-39
Identities = 63/418 (15%), Positives = 118/418 (28%), Gaps = 136/418 (32%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
PP PL+ V+ + E + + ++ + + WYK+ ++ + + L+
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 474 IFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
I D GEY+C+ G S A L ++ +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL------------------------ 100
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
P F + ++ + ++ S + W
Sbjct: 101 -------------------------PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
+++ + L + F L++ + D G Y A+N LG+A+ A++T+
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQILQTDQS-HVGQYNCSASNPLGTASSSAKLTLSEH 194
Query: 653 KVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDL 712
E P D P V + GE
Sbjct: 195 --------------------------------------EVPPFFD-LKPVSVDLALGESG 215
Query: 713 KIEVRFKALPPPKAEWTVNGTVIVPSKR-------------------------------- 740
+ P K W + I P
Sbjct: 216 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275
Query: 741 -----------VKGKAEFIKKLDDLE-VKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
V+ FIKKL+ VK+ E+ E ++ + V W+K+ + I+
Sbjct: 276 AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 333
Score = 99.9 bits (249), Expect = 5e-22
Identities = 45/276 (16%), Positives = 75/276 (27%), Gaps = 87/276 (31%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
+ P FIE E I L KV +P I W++ + L S+P + F L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
+ + D D G+Y A N +G+ A + +
Sbjct: 64 VINKVDHS-DVGEYTCKAENSVGAVASSAVLVI--------------------------- 95
Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
K + P V G + E R P + W +G ++
Sbjct: 96 -----------KERKLPPSFARKLKD-VHETLGFPVAFECRINGSEPLQVSWYKDGELLK 143
Query: 737 PSKRVK-------------------------------GKAE---------------FIKK 750
++ G A F K
Sbjct: 144 DDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLK 203
Query: 751 LDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+++ E+ + VT + W K+N I+
Sbjct: 204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239
Score = 46.7 bits (111), Expect = 2e-05
Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 51/141 (36%)
Query: 696 IDPP----PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK--------- 742
++PP P V GE + ++ + P + W T + + K
Sbjct: 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 743 ----------------------GKAE---------------FIKKLDDLEVKERENAVLE 765
G F +KL D+ E
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 766 VEVTSD-KADVKWFKNNSLIK 785
+ V W+K+ L+K
Sbjct: 123 CRINGSEPLQVSWYKDGELLK 143
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 335 bits (861), Expect = e-103
Identities = 127/682 (18%), Positives = 205/682 (30%), Gaps = 135/682 (19%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
K +S + L P P WY E VV +D +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND--RVKQVS 305
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ IK + G Y V N G ++ + V S ++ G A
Sbjct: 306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT----APLSAKIDPPTQTVDFGRPA 361
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
V + Q G P V W KDGK I + L + +DKG Y V N +
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGH-------SESVLRIESVKKEDKGMYQCFVRNDRES 414
Query: 192 VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGE 251
E++A L + P I + + ++ G
Sbjct: 415 AEASAELKLGGRFD-----------------------------PPVIRQAFQEETMEPGP 445
Query: 252 SAVLSVQVGGEPSPKVEWYKDGKLI--------KDRQITSEKNTHTLTLIQCSTKDKGRY 303
S L GG P+P++ W DGK I + L + D G Y
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY 505
Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKD 362
+K G E +A LNV G +I++++ + E ++ V + W +D
Sbjct: 506 KCIAKSKVGVAEHSAKLNV-YGLP-YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 363 GQEIKTSKKVTIEKKGTIRKLLIRNISV-HDEGEYTCS-----LPDQETSAELNVVELPP 416
+ + ++K + GT L+I N+ D+ YTC S E+ V+ LP
Sbjct: 564 NRALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLS-IDGKKQKLI 473
I ++ + + + GD + W DG+ I+ +T S + + L
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLT 680
Query: 474 IFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
I + AG ++C G ++ L V P
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-------------------------- 714
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
P +I +K + ++ K P P + W
Sbjct: 715 --------------------------PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW 748
Query: 593 FRNNKPLLSSPKK---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ K + E L + + G Y A N +GS +
Sbjct: 749 KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT-NEGYYLCEAINGIGSGLSAVIMIS 807
Query: 650 DVEKVGRPPINSIDIDRNHVHH 671
V H HH
Sbjct: 808 ----VQAHH---------HHHH 816
Score = 306 bits (785), Expect = 2e-92
Identities = 141/857 (16%), Positives = 236/857 (27%), Gaps = 213/857 (24%)
Query: 7 ILEGIPPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWY-YNGEPLQETDEVVFSDQ 64
+ P F K+ T + ++ +E + P P+++W +G + + +
Sbjct: 33 DADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 92
Query: 65 SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDV 123
+ ++ VY +A+N+ G D+ V+ ++
Sbjct: 93 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA----VVAQYYEADVNKE 148
Query: 124 SITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQITSEKNTH-----TLTLIQCST 175
+ G SAV+ + + V W+ D + + L + +
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 208
Query: 176 KD-KGRYSVKVTNKEG-TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233
+D Y + ++ +A S P
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSL---------------- 252
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-----EKNTH 288
+ + + L G P P WYK + +Q ++ +
Sbjct: 253 ------AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG 306
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
TL + +D G+Y V N G L V V AV
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTC 365
Query: 349 EVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQ 403
+ T + V W KDG+ I S+ V L I ++ D+G Y C
Sbjct: 366 QYTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESA 415
Query: 404 ETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE 459
E SAEL + PP I Q+ + + G+ + W DGK+IA ++
Sbjct: 416 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGGNPTPEISWELDGKKIANND 474
Query: 460 NVTLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTK 513
+ L I S D G Y C G E A L V
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV---------- 524
Query: 514 LPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK 573
+I + E+K +
Sbjct: 525 -------------------------------------------YGLPYIRQMEKKAIVAG 541
Query: 574 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
T+ + V P SIVW R+N+ L + K++ +G L ++ + +D Y V
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSDQATYTCV 598
Query: 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETA 693
A N+ G S R S EV V
Sbjct: 599 AKNQEG------------------------------------YSARGSLEVQVMVL---- 618
Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPSKR------------ 740
P I P E + G+ L + P +WT++G I
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 741 --------------------------------VKGKAEFIKKLDDLEVKERENAVLEVEV 768
V +I + D + +A +E +
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKA 738
Query: 769 TSD-KADVKWFKNNSLI 784
K V W K
Sbjct: 739 DGFPKPQVTWKKAVGDT 755
Score = 305 bits (782), Expect = 6e-92
Identities = 116/783 (14%), Positives = 222/783 (28%), Gaps = 176/783 (22%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRL---VAVPEPDLLWYYNGEPLQETDE 58
S + + + + + ++ + VA + W+ + E
Sbjct: 128 SRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA 187
Query: 59 VV---FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE-------AKMDIPVKVNT 108
+ ++ V + Y K+R + + +
Sbjct: 188 EYDGKYLVLPSGELHIREVG----PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-----EK 163
K L + + + L G P P WYK + +Q ++
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL 223
+ TL + +D G+Y V N G L V
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---------------------- 341
Query: 224 DTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS 283
S ++ G AV + Q G P V W KDGK I
Sbjct: 342 ----------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH----- 386
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKER 341
+ L + +DKG Y V N + E++A L + + + ++
Sbjct: 387 --SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPG 444
Query: 342 ENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISVHDEGE 395
+ L+ + ++ W DG++I + + + + T+ L I ++ +D G
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504
Query: 396 YTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWY 449
Y C + E SA+LNV P I ++ + E + G + + W
Sbjct: 505 YKCIAKSKVGVAEHSAKLNVYG-LPYIR-QMEKKAIVAGETLIVTCPVA-GYPIDSIVWE 561
Query: 450 KDGKEIAFSENVTLSIDGKKQKLIIFSAGL-EDAGEYSCRVGDTGDKESKATLTVEAPAV 508
+D + + + + +G LII + D Y+C + ++ +L V+
Sbjct: 562 RDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQ---- 614
Query: 509 EFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK 568
V ++P + FEE
Sbjct: 615 --------VMVLP-------------------------------------RIIPFAFEEG 629
Query: 569 TVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSETD 626
+ + L V P +I W + + + G +L ++ ++
Sbjct: 630 PAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-H 688
Query: 627 AGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDV 686
AG++ A N G + V V
Sbjct: 689 AGNFTCHARNLAGHQQFTTPLNVYV----------------------------------- 713
Query: 687 EKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
P P + +G D K+E + P P+ W + K++
Sbjct: 714 ------PPRWI-LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSD 766
Query: 747 FIK 749
I+
Sbjct: 767 NIR 769
Score = 275 bits (705), Expect = 6e-81
Identities = 112/797 (14%), Positives = 208/797 (26%), Gaps = 224/797 (28%)
Query: 75 TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL-EPLHDVSITEGESAVL 133
+ + + + ++ VA G + K P L EP + + + A +
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKG--PVFLKEPTNRIDFSNSTGAEI 59
Query: 134 SVQVGGEPSPKVEWYK-DGKLIKD-RQITSEKNTHTLTLIQCSTKDK------GRYSVKV 185
+ G P P++ W + DG + D + + L +D Y+
Sbjct: 60 ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
N+ G++ S ++
Sbjct: 120 RNQFGSIISRDVHVRAVV-------------------------------AQYYEADVNKE 148
Query: 246 SITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQITSEKNTH-----TLTLIQCST 297
+ G SAV+ + + V W+ D + + L + +
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 208
Query: 298 KD-KGRYSVKVTNKEGT---VESAANLNVDQG-------KAEFIKKLDDLEVKERENAVL 346
+D Y + ++ + + V K + K D L
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268
Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTI--RKLLIRNISVHDEGEYTC----S 399
+W+K + + V + + L+I++ V D G+Y C S
Sbjct: 269 LCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS 328
Query: 400 LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFS 458
+ + L V P + V A F + T V W KDGK I S
Sbjct: 329 VGGESVETVLTVTA-PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS 387
Query: 459 ENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSV 517
E+V L I S ED G Y C V D E+ A L +
Sbjct: 388 ESV----------LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD--------- 428
Query: 518 TLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR 577
P+ + F+E+T++ ++
Sbjct: 429 ----------------------------------------PPVIRQAFQEETMEPGPSVF 448
Query: 578 LMAKVKASPAPSIVWFRNNKPLLSSPKKR-----EIFDGENIILELKEADSETDAGDYKV 632
L +P P I W + K + ++ + + + L + D G YK
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV-HANDGGLYKC 507
Query: 633 VATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVET 692
+A +++G A H A++ V
Sbjct: 508 IAKSKVGVAEHSAKLN-----------------------------------------VYG 526
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------ 740
P I ++ GE L + P W + + +++
Sbjct: 527 LPYIRQMEKKAIVA--GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIE 584
Query: 741 ------------------------------VKGKAEFIKK-LDDLEVKERENAVLEVEVT 769
V I ++ + + L V
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Query: 770 SDK--ADVKWFKNNSLI 784
++ W + I
Sbjct: 645 GGDLPLNIDWTLDGQAI 661
Score = 219 bits (559), Expect = 8e-61
Identities = 101/703 (14%), Positives = 187/703 (26%), Gaps = 220/703 (31%)
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
+ + K ++ G+ AAN + P +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK-----------GPVFLK------ 43
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD-RQITSEK 285
EP + + + A + + G P P++ W + DG + D +
Sbjct: 44 ------------EPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS 91
Query: 286 NTHTLTLIQCSTKDK------GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVK 339
+ L +D Y+ N+ G++ S + ++ V
Sbjct: 92 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 151
Query: 340 ERENAVLEVEVTSDKAD----VKWFKDGQEI-----KTSKKVTIEKKGTIRKLLIRNISV 390
+AV++ + S AD V W D +E + K + G L IR +
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---LHIREVGP 208
Query: 391 HD-EGEYTC-------SLPDQETSAELNVVELPPEISVP-------LQDVKVSRDEKASF 435
D Y C + V+ P +VP S +
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268
Query: 436 EIELTKGDAL--VKWYKDGKEIAFSENVTLS--IDGKKQKLIIFSAGLEDAGEYSCRVG- 490
G + +WYK + + V L+ + LII A +ED+G+Y C V
Sbjct: 269 LCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327
Query: 491 DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTC 550
G + + LTV AP
Sbjct: 328 SVGGESVETVLTVTAP-------------------------------------------- 343
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
+TV + +P ++ W ++ K + S
Sbjct: 344 --------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------ 389
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVH 670
+L ++ E D G Y+ N+ SA A + +
Sbjct: 390 ----VLRIESVKKE-DKGMYQCFVRNDRESAEASAELKLGG------------------- 425
Query: 671 HLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTV 730
PVI E ++ G + ++ P P+ W +
Sbjct: 426 -------------------RFDPPVI-RQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465
Query: 731 NGTVIVPSKRVK------------------------------------GKAE-------- 746
+G I + R + G AE
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Query: 747 ---FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+I++++ + E ++ V + W ++N +
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP 568
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 269 bits (688), Expect = 4e-80
Identities = 97/656 (14%), Positives = 192/656 (29%), Gaps = 132/656 (20%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
+ +P E+ V LW+ N + L + + S+ +
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN- 163
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
+T+ ++ + + Y +N + D V +N + P + S
Sbjct: 164 -----RTLTLFNVTRNDTASYKCETQNPVSARRSD-SVILNVLYGPDAPTISP-LNTSYR 216
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
GE+ LS P + W+ +G ++T L + + + G Y+ +
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQAH 268
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
N + + + P P++ +
Sbjct: 269 NSDTGLNRTTVTTI--------TVYAEPPKPFIT--------------------SNNSNP 300
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
+ + ++ L+ + + + + W + L ++ + TLTL+ + D G Y
Sbjct: 301 VEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECG 360
Query: 307 VTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQ 364
+ N+ S LNV G + + N L S+ A W DG
Sbjct: 361 IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN 420
Query: 365 EIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV---ELPPE 417
+ + ++L I NI+ + G YTC S + + ELP
Sbjct: 421 IQQHT-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKP 469
Query: 418 ISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA 477
V + +F E + W+ +G+ + S + LS + L +F+
Sbjct: 470 SISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNV 527
Query: 478 GLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
DA Y C + ++ S TL V P
Sbjct: 528 TRNDARAYVCGIQNSVSANRSDPVTLDVLYG----------------------------P 559
Query: 536 DIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN 595
D I + + + L ++P+P W N
Sbjct: 560 DT-----------------------PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596
Query: 596 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
P + +L + + + + G Y +N + ++ V
Sbjct: 597 GIPQQHTQ-----------VLFIAKI-TPNNNGTYACFVSNLATGRNNSIVKSITV 640
Score = 255 bits (653), Expect = 4e-75
Identities = 105/743 (14%), Positives = 206/743 (27%), Gaps = 172/743 (23%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVT----- 75
P E EV L V + WY + + + + +
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 76 -------IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
I++I + + G YT+ + + + + + + + +
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNE-EATGQFRVYPELPKPSISSNNSKPVEDK 126
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
++ + + + W+ + + L ++ TLTL + D Y + N
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQN 185
Query: 188 KEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
S LNV Y P +P + S
Sbjct: 186 PVSARRSDSVILNV-LYGPDAPTISPL------------------------------NTS 214
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
GE+ LS P + W+ +G ++T L + + + G Y+ +
Sbjct: 215 YRSGENLNLSCHAASNPPAQYSWFVNGTFQ--------QSTQELFIPNITVNNSGSYTCQ 266
Query: 307 VTNKEGTVESAANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDG 363
N + + + FI + V++ + L E W+ +
Sbjct: 267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNN 326
Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEI 418
Q + S ++ + R L + +++ +D G Y C + D LNV+ P +
Sbjct: 327 QSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384
Query: 419 SVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
++ S + A W DG + Q+L I +
Sbjct: 385 TISPSYTYYRPGVNLSLSCH-AASNPPAQYSWLIDGNIQQHT-----------QELFISN 432
Query: 477 AGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSP 535
+++G Y+C+ ++ T+ A
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP------------------------- 467
Query: 536 DIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN 595
I K V++K + + +A + +W+ N
Sbjct: 468 -----------------------KPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVN 503
Query: 596 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
+ L SP+ + N L L + DA Y N + + VT+D
Sbjct: 504 GQSLPVSPRLQLSNG--NRTLTLFNV-TRNDARAYVCGIQNSVSANRSDP-VTLD----- 554
Query: 656 RPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE 715
V P PP+ G +L +
Sbjct: 555 ----------------------------------VLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 716 VRFKALPPPKAEWTVNGTVIVPS 738
+ P P+ W +NG +
Sbjct: 581 CHSASNPSPQYSWRINGIPQQHT 603
Score = 240 bits (614), Expect = 1e-69
Identities = 73/507 (14%), Positives = 145/507 (28%), Gaps = 78/507 (15%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + + L + P W+ NG Q T
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST--------------- 247
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ I +I G YT A N + + + + + + ++
Sbjct: 248 QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAV 307
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
L+ + + + + W + L ++ + TLTL+ + D G Y + N+
Sbjct: 308 ALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSV 367
Query: 192 VES-AANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEG 250
S LNV Y P + +P G
Sbjct: 368 DHSDPVILNVL-YGPDDPTISPS------------------------------YTYYRPG 396
Query: 251 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 310
+ LS P + W DG + ++T L + + K+ G Y+ + N
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQ--------QHTQELFISNITEKNSGLYTCQANNS 448
Query: 311 EGTVESAANLNVDQGKA---EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIK 367
+ I + V++++ E + W+ +GQ +
Sbjct: 449 ASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLP 508
Query: 368 TSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPL 422
S ++ + R L + N++ +D Y C + ++ L+V+ P +
Sbjct: 509 VSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566
Query: 423 QDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLED 481
D + + W +G + Q L I +
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVLFIAKITPNN 615
Query: 482 AGEYSCRVG-DTGDKESKATLTVEAPA 507
G Y+C V + + ++ A
Sbjct: 616 NGTYACFVSNLATGRNNSIVKSITVSA 642
Score = 226 bits (577), Expect = 2e-64
Identities = 99/720 (13%), Positives = 182/720 (25%), Gaps = 184/720 (25%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--------------- 166
++ EG+ +L V + WYK ++ +RQI
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 167 ----TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+L + D G Y++ V + E A
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEA--------------------------- 100
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK-LIKDRQI 281
T Q + + + + ++ + + + W+ + + L ++
Sbjct: 101 --TGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL 157
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKE 340
TLTL + D Y + N S LNV G + +
Sbjct: 158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRS 217
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
EN L S+ A WF +G +++ ++L I NI+V++ G YTC
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQ 266
Query: 400 LPDQETSAE------LNVVELPPEISV-PLQDVKVSRDEKASFEIELTKGDALVKWYKDG 452
+ +T + V PP+ + V ++ + E + W+ +
Sbjct: 267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNN 326
Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFL 511
+ + S + LS D + L + S D G Y C + + S +
Sbjct: 327 QSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVI---------- 374
Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
LN+ P +
Sbjct: 375 ------------------------------LNVLYGP----------DDPTISPSYTYYR 394
Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 631
+ L ++P W + + + L + +E ++G Y
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE-----------LFISNI-TEKNSGLYT 442
Query: 632 VVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE 691
A N + T+ V P S S V+ + V
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSI----------------SSNNSKPVEDKDAVA 486
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPP--------------------------PK 725
+ + G+ L + R +
Sbjct: 487 FTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSAN 546
Query: 726 AEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
V V+ I D N L S+ W N
Sbjct: 547 RSDPVTLDVLYGPDT------PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ 600
Score = 131 bits (331), Expect = 5e-32
Identities = 68/507 (13%), Positives = 118/507 (23%), Gaps = 147/507 (28%)
Query: 335 DLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKT-------------------SKKVTI 374
V E + +L V W+K + S + I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 375 EKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAE------LNVVELPPEISVPLQDVKVS 428
+ LLI+NI +D G YT + + E ELP V
Sbjct: 68 YPNAS---LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVE 124
Query: 429 RDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ +F E DA W+ + + + S + LS + L +F+ D Y C
Sbjct: 125 DKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRT--LTLFNVTRNDTASYKCE 182
Query: 489 V--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI 546
+ + L V
Sbjct: 183 TQNPVSARRSDSVILNVLYGP--------------------------------------- 203
Query: 547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 606
+ + + L ++P WF N S+ +
Sbjct: 204 ------------DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-- 249
Query: 607 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDR 666
L + ++G Y A N T+ V PP I
Sbjct: 250 ---------LFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITV--YAEPPKPFI---- 293
Query: 667 NHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA 726
+ S V+ E V + + + L + R +
Sbjct: 294 ----------TSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSND--- 340
Query: 727 EWTVNGTVIVPS---------------------------KRVKGKAEFIKKLDDLEVKER 759
N T+ + S + G + +
Sbjct: 341 ----NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396
Query: 760 ENAVLEVEVTSD-KADVKWFKNNSLIK 785
N L S+ A W + ++ +
Sbjct: 397 VNLSLSCHAASNPPAQYSWLIDGNIQQ 423
Score = 78.1 bits (192), Expect = 4e-15
Identities = 56/421 (13%), Positives = 102/421 (24%), Gaps = 145/421 (34%)
Query: 417 EISVPLQDVKVSRDEKASFEIE-LTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK---- 471
++++ V+ ++ + L + WYK + + + I ++
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 472 ------------LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
L+I + D G Y+ V + +AT
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVY------------- 107
Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
P I K V++K +
Sbjct: 108 -----------------------------------PELPKPSISSNNSKPVEDKDAVAFT 132
Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
+ + + +W+ NN+ L SP R N L L + D YK N +
Sbjct: 133 CEPETQD-ATYLWWVNNQSLPVSP--RLQLSNGNRTLTLFNV-TRNDTASYKCETQNPVS 188
Query: 640 SATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPP 699
+ +S V + V P
Sbjct: 189 AR--------------------------------------RSDSVILN--VLYGPDAPTI 208
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------- 740
P + GE+L + + PP + W VNGT ++
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAH 268
Query: 741 -VKGKAE----------------FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSL 783
FI + V++ + L E W+ NN
Sbjct: 269 NSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQS 328
Query: 784 I 784
+
Sbjct: 329 L 329
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 265 bits (677), Expect = 2e-77
Identities = 104/813 (12%), Positives = 217/813 (26%), Gaps = 213/813 (26%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P S + + + N+ + + R + DL W + V ++ SD +
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEVTECSD-GLFC 85
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP-EKPSILEPLHDVSITEGES 130
+TI + + G Y + + + + + V+ S + ++ + ++
Sbjct: 86 KTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKT 145
Query: 131 AVLSVQVGGEPSPKV--EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
V+ Y + + + D S + T+ G +
Sbjct: 146 VVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIN 205
Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
+ + +S + V V+ P H + ++
Sbjct: 206 DESYQSIMYIVV---------VVGYRIYDVVL-------------------SPSHGIELS 237
Query: 249 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI-------------TSEKNTHTLTLIQC 295
GE VL+ E + +++ + K + +K TLT+
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGK--AEFIKKLDDLEVKERENAVLEVEVTSD 353
+ D+G Y+ ++ T +++ + V + A +E E + +
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY 357
Query: 354 -KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAE 408
++KW+K+G ++++ + L I +S D G YT + ++ S
Sbjct: 358 PPPEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412
Query: 409 LNV-VELPPEI---SVPLQDVKVSRDEKASFEIELTKGDA--LVKWYKDGKE-------- 454
+++ V +PP+I S+ + + + WY +E
Sbjct: 413 VSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQ 472
Query: 455 ------------------------IAFSENVTLSIDGK-KQKLIIFSAGLEDAGEYSCRV 489
I ++N I+GK K + + Y C
Sbjct: 473 AVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEA 532
Query: 490 G-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548
G E + V
Sbjct: 533 VNKVGRGERVISFHV--------------------------------------------- 547
Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----- 603
I + E+ ++ L S ++ W++ L
Sbjct: 548 --------TRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELP 599
Query: 604 ---------------KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
+ +I+ELK A S D GDY +A + H
Sbjct: 600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNA-SLQDQGDYVCLAQDRKTKKRH----- 653
Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
+ AP I
Sbjct: 654 --------------------------------CVVRQLTVLERVAPTIT-GNLENQTTSI 680
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
GE +++ PPP+ W + +V +
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGI 713
Score = 262 bits (671), Expect = 1e-76
Identities = 110/742 (14%), Positives = 215/742 (28%), Gaps = 177/742 (23%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLL--WYYNGEPLQETDEVVFSDQSDMH 68
+ + +N V + L Y + + + + + +
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF- 185
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
TI S G+ AK + + + + V G +L P H + ++ G
Sbjct: 186 ------TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 239
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-------------ITSEKNTHTLTLIQCST 175
E VL+ E + +++ + K + +K TLT+ +
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 299
Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEK 235
D+G Y+ ++ T +++ + V KP
Sbjct: 300 SDQGLYTCAASSGLMTKKNSTFVRV-----------------------------HEKPFV 330
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 295
V T GE + + G P P+++WYK+G ++ K H LT+++
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--KAGHVLTIMEV 388
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVD-QGKAEFIKK---LDDLEVKERENAVLEVEVT 351
S +D G Y+V +TN + + +++ + +K + L V
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVY 448
Query: 352 SD--KADVKWFKDGQEIKTSKK---------------------------------VTIEK 376
+ + W+ +E ++ + +
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508
Query: 377 KGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEK 432
+ + + Y C + E +V PEI++ D++ + E
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-GPEITLQ-PDMQPTEQES 566
Query: 433 ASFEIELTKGDAL-VKWYKDGKEIAFSENVTL--------------------SIDGKKQK 471
S + + WYK G + L +
Sbjct: 567 VSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILI 626
Query: 472 LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
+ + +A L+D G+Y C D K +
Sbjct: 627 MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV--------------------- 665
Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
AP E +T +I + +P P I
Sbjct: 666 ---------------------------APTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
+WF++N+ L+ + N L ++ E D G Y A + LG A A ++
Sbjct: 699 MWFKDNETLVEDS--GIVLKDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIE 755
Query: 651 VEKVGRPPINSIDIDRNHVHHL 672
G +++R H HH
Sbjct: 756 ----GAQEK--TNLERTHHHHH 771
Score = 234 bits (597), Expect = 3e-66
Identities = 94/790 (11%), Positives = 211/790 (26%), Gaps = 162/790 (20%)
Query: 76 IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
++S ++ V + + P + ++I + ++
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSV-------SLDLPRLSIQKDILTIKANTTLQITC 53
Query: 136 QVGGEPSPKVEWYKDGKLIKDR----QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
+ G+ W + + R + + TLT+ + D G Y +
Sbjct: 54 R--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA 111
Query: 192 VESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGE 251
+ P S + ++ + +
Sbjct: 112 SVIYVYVQD------------YRSPF---------------IASVSDQHGVVYITENKNK 144
Query: 252 SAVLSVQVGGEPSPKV--EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 309
+ V+ Y + + + D S + T+ G +
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKI 204
Query: 310 KEGTVESAANLNVDQGKAEF---IKKLDDLEVKERENAVLEVEVTSD---KADVKWFKDG 363
+ + +S + V G + + +E+ E VL ++ D W
Sbjct: 205 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPS 264
Query: 364 QEIKTSKKVTIEKKGT--------IRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
+ + K V + K + L I ++ D+G YTC L ++ S + V
Sbjct: 265 SKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324
Query: 412 VELP--PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDG 467
E P S V+ + E+ + G +KWYK+G + + +
Sbjct: 325 HEKPFVAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTIKAG--- 380
Query: 468 KKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV---EAPAVEFLTKLPSVTLVPHL 523
L I D G Y+ + ++ +++ P + + + V +
Sbjct: 381 --HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG 438
Query: 524 GDATFQVELSS--PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
T + + P + W + + EE + + +
Sbjct: 439 TTQTLTCTVYAIPPPHHIHW-------------------YWQLEEECANEPSQAVSVTNP 479
Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
S+ F+ + + + + +G+N + + + YK A N++G
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539
Query: 642 THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPP 701
V P I + + + ++ V D
Sbjct: 540 ERVISFHVTR----GPEI-----------------TLQPDMQPTEQESVSLWCTADRSTF 578
Query: 702 PEVLVKKGEDLKIEVRFKALPPPKAE-----WTVNGTVIVPSK----------------- 739
+ K + + LP P + W +N T+ S
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 740 -----------------------RVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADV 775
+ L++ E+ + + + +
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 776 KWFKNNSLIK 785
WFK+N +
Sbjct: 699 MWFKDNETLV 708
Score = 203 bits (518), Expect = 1e-55
Identities = 76/481 (15%), Positives = 136/481 (28%), Gaps = 113/481 (23%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
S V A V + + + P P++ WY NG PL+ +
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI---------K 378
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN-TGKPEKPSILEPLHDVSITEG 128
++TI + +R+ G YTV+ N + K V + P+ S G
Sbjct: 379 AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG 438
Query: 129 ESAVLSVQVGGEPSP-KVEWYKDGKLI--------------------------------- 154
+ L+ V P P + WY +
Sbjct: 439 TTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIE 498
Query: 155 ---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKET 211
+ KN TL+ + Y + NK G E + +V
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV----------- 547
Query: 212 PPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK 271
+ P + + D+ TE ES L + WYK
Sbjct: 548 --TRGPEITLQP--------------------DMQPTEQESVSLWCTADRSTFENLTWYK 585
Query: 272 DGKLIKDRQIT-----------------------SEKNTHTLTLIQCSTKDKGRYSVKVT 308
G + S + + L S +D+G Y
Sbjct: 586 LGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645
Query: 309 NKEGTVESAANLNV---DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQ 364
+++ + ++ L++ E+ + + + + WFKD +
Sbjct: 646 DRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE 705
Query: 365 EIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISV 420
+ + ++ R L IR + DEG YTC L + A + + ++
Sbjct: 706 TLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 763
Query: 421 P 421
Sbjct: 764 E 764
Score = 154 bits (389), Expect = 5e-39
Identities = 60/378 (15%), Positives = 113/378 (29%), Gaps = 90/378 (23%)
Query: 2 SSLADILEGIPPTFSKKT---KPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETD 57
S + ++ +PP +K+ + + TL + A+P P + WY+ E +
Sbjct: 410 SHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANE 469
Query: 58 EVVFSDQSDMH-----------------------------SYVSIVTIKSIKKREEGVYT 88
++ + ++ T+ +Y
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529
Query: 89 VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY 148
A N+ G + I V P I D+ TE ES L + WY
Sbjct: 530 CEAVNKVGRGERVISFHVT----RGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWY 584
Query: 149 KDGKLIKDRQIT-----------------------SEKNTHTLTLIQCSTKDKGRYSVKV 185
K G + S + + L S +D+G Y
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644
Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
+++ + E P+I L +
Sbjct: 645 QDRKTKKRHCVVRQLTVLE----------------------------RVAPTITGNLENQ 676
Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYS 304
+ + GES +S G P P++ W+KD + + D I + LT+ + +D+G Y+
Sbjct: 677 TTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYT 736
Query: 305 VKVTNKEGTVESAANLNV 322
+ + G + A +
Sbjct: 737 CQACSVLGCAKVEAFFII 754
Score = 78.6 bits (193), Expect = 4e-15
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
+LE + PT + + + + P P ++W+ + E L E +V D +
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN- 719
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
+TI+ ++K +EG+YT A + G AK++ + G EK ++
Sbjct: 720 -----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE-GAQEKTNL 763
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 219 bits (561), Expect = 5e-66
Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 45/315 (14%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 165
G P V + GES V G K+ W KD + I+ + ++T +NT
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
TLT+++ + D G+Y+ +N G +A L V
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ------------------------ 96
Query: 226 LQVNTGKPEKPSILEPLHDV-SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQI 281
E P ++ L + + E ++GG P KV WYKD I+ ++
Sbjct: 97 --------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 148
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
+ ++ L + S +D G Y+ + N G+ S+ +L V + F KK +E +
Sbjct: 149 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV-KEPPVFRKKPHPVETLKG 207
Query: 342 ENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC-- 398
+ LE E+ V W KD +E+++ KK I + + + I N+ D GEY C
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 399 --SLPDQETSAELNV 411
+ + +
Sbjct: 268 SNDVGSYTCVGSITL 282
Score = 216 bits (553), Expect = 7e-65
Identities = 61/318 (19%), Positives = 115/318 (36%), Gaps = 47/318 (14%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP F K V T + + + W + ++ + +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY----KMTLVENT 60
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDV-SITEGES 130
+ +T+ + K + G YT A N G+ + V E P ++ L + + E
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQDEH 116
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
++GG P KV WYKD I+ +++ ++ L + S +D G Y+ + N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
G+ S+ +L V E P + H V
Sbjct: 177 AAGSASSSTSLKVK--------------------------------EPPVFRKKPHPVET 204
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYS 304
+G L ++ G P +V W+KD + ++ +I SE ++ ++ + D G Y
Sbjct: 205 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ 264
Query: 305 VKVTNKEGTVESAANLNV 322
K +N G+ ++ +
Sbjct: 265 CKASNDVGSYTCVGSITL 282
Score = 213 bits (545), Expect = 9e-64
Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 15/287 (5%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
G P V + GES V G K+ W KD + I+ + ++T +NT
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVL 346
TLT+++ + D G+Y+ +N G +A L V Q FIKKL+ VK+ E+
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-QEPPRFIKKLEPSRIVKQDEHTRY 119
Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLP 401
E ++ + V W+KD EI+ S K + ++ L + N+SV D G+YTC +
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179
Query: 402 DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE 459
+S L V E PP V+ + E E +G V W+KD +E+ +
Sbjct: 180 SASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECE-LQGTPPFQVSWHKDKRELRSGK 237
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
+ + + I + D GEY C+ D G ++T++A
Sbjct: 238 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 183 bits (465), Expect = 2e-52
Identities = 68/331 (20%), Positives = 123/331 (37%), Gaps = 64/331 (19%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
F K +++ E+ + VT + W KD +EI+ + L +
Sbjct: 7 FFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVK-VSRDEKASFEIELTK 441
++ D G+YTC SA+L V E PP L+ + V +DE +E ++
Sbjct: 67 KVTKGDAGQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRIVKQDEHTRYECKIG- 124
Query: 442 GDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESK 498
G V WYKD EI S +S L +++ +ED+G+Y+C G S
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 499 ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA 558
+L V+ P
Sbjct: 185 TSLKVKEP---------------------------------------------------- 192
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P+F ++ + + L +++ +P + W ++ + L S K + + + + +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
DS D G+Y+ A+N++GS T +T+
Sbjct: 253 LNVDSA-DIGEYQCKASNDVGSYTCVGSITL 282
Score = 141 bits (358), Expect = 9e-38
Identities = 67/332 (20%), Positives = 105/332 (31%), Gaps = 100/332 (30%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
PP + V ++ E +F+ +T G A + W KD +EI N +++ L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
+ DAG+Y+C G A L V+ P
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP------------------------- 98
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE-EKTVKEKGTIRLMAKVKASPAPSI 590
P FI++ E + VK+ R K+ SP +
Sbjct: 99 ---------------------------PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131
Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
+W+++ + S K R F +LE+ S D+GDY A N GSA+ + V
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Query: 651 VEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGE 710
PV P P V KG
Sbjct: 191 E-----------------------------------------PPVFRKKPHP-VETLKGA 208
Query: 711 DLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
D+ +E + PP + W + + K+ K
Sbjct: 209 DVHLECELQGTPPFQVSWHKDKRELRSGKKYK 240
Score = 115 bits (289), Expect = 1e-28
Identities = 40/272 (14%), Positives = 68/272 (25%), Gaps = 86/272 (31%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
P F + + + V + I W ++N+ + + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
+ + DAG Y A+N G + A++ V
Sbjct: 65 VLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQE-------------------------- 97
Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVP 737
P P +VK+ E + E + P K W + T I
Sbjct: 98 ---------------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 738 SKR-------------------------------------------VKGKAEFIKKLDDL 754
S + VK F KK +
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202
Query: 755 EVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
E + + LE E+ V W K+ ++
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELR 234
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 218 bits (557), Expect = 6e-64
Identities = 79/414 (19%), Positives = 136/414 (32%), Gaps = 45/414 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
F + V L + P + W +G L + +
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
+ + K +EG+Y A + + + KV P L ++ G++
Sbjct: 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP--LRFLSQTESITAFMGDT 138
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
+L +V G+P P + W K+ + + D ++ + L + + D G Y
Sbjct: 139 VLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS-GALQISRLQPGDSGVYRCSAR 197
Query: 187 NKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
N T A + + P L+ +V
Sbjct: 198 NPASTRTGNEAEVRI--------LSDPGLHRQ------------------LYFLQRPSNV 231
Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYS 304
EG+ AVL V G P P W + ++I+ + S L + + D G Y+
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 305 VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDG 363
VT K + ++A L V F+ +L E + E V+ V W K+G
Sbjct: 292 CVVTYKNENISASAELTV-LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
+ S I L I + DEG Y C + ++SA+L V +
Sbjct: 351 DVVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 217 bits (554), Expect = 1e-63
Identities = 81/444 (18%), Positives = 147/444 (33%), Gaps = 70/444 (15%)
Query: 91 AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK 149
+ + + D G + +L+ P ++W K
Sbjct: 3 WGSELESSHHHHHHGG----RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK 58
Query: 150 DGKLIK----DRQITSEKNT---HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
DG ++ DR+ + + + D+G Y + + +
Sbjct: 59 DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS---------- 108
Query: 203 YEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 262
++S + V L ++ G++ +L +V G+
Sbjct: 109 ----------------IISRTAKVMVA----GPLRFLSQTESITAFMGDTVLLKCEVIGD 148
Query: 263 PSPKVEWYKDGKLIK----DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA- 317
P P + W K+ + + D ++ + L + + D G Y N T
Sbjct: 149 PMPTIHWQKNQQDLNPIPGDSRVVVLPS-GALQISRLQPGDSGVYRCSARNPASTRTGNE 207
Query: 318 ANLNV-----DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIK-TSK 370
A + + + F+++ ++ E ++AVLE V+ W + + I+ SK
Sbjct: 208 AEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK 267
Query: 371 KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVK 426
K ++ LLI N++ D G YTC + SAEL V+ PP ++
Sbjct: 268 KYSLLGGSN---LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-PPWFLNHPSNLY 323
Query: 427 VSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
FE G V W K+G + S+ + L I D G
Sbjct: 324 AYESMDIEFECA-VSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGF 379
Query: 485 YSCRVG-DTGDKESKATLTVEAPA 507
Y C + G+ +S A L V PA
Sbjct: 380 YQCVAENEAGNAQSSAQLIVPKPA 403
Score = 194 bits (495), Expect = 3e-55
Identities = 78/444 (17%), Positives = 140/444 (31%), Gaps = 90/444 (20%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK----DRQITSEKNT 287
+ D G + +L+ P ++W KDG ++ DR+ +
Sbjct: 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS 78
Query: 288 ---HTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNVDQGKAEFIKKLDDLEVKERE 342
+ + D+G Y + + + + A + V G F+ + + + +
Sbjct: 79 LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV-AGPLRFLSQTESITAFMGD 137
Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKT---SKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+L+ EV D + W K+ Q++ +V + G L I + D G Y C
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRC 194
Query: 399 SL-----PDQETSAELNVVELP-----PEISVPLQDVKVSRDEKASFEIELTKGD--ALV 446
S AE+ ++ P +V + A E G
Sbjct: 195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECC-VSGYPPPSF 253
Query: 447 KWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
W + + I + G L+I + +D+G Y+C V + + A LTV
Sbjct: 254 TWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
P P F+
Sbjct: 312 P----------------------------------------------------PWFLNHP 319
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
E I V P P++ W +N ++ S + + IL + ++
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGV----VKS 375
Query: 626 DAGDYKVVATNELGSATHGARVTV 649
D G Y+ VA NE G+A A++ V
Sbjct: 376 DEGFYQCVAENEAGNAQSSAQLIV 399
Score = 150 bits (381), Expect = 1e-39
Identities = 73/454 (16%), Positives = 130/454 (28%), Gaps = 116/454 (25%)
Query: 308 TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQE 365
++ + + + F+ + D N +L SD+ +KW KDG
Sbjct: 4 GSELESSHHHHHHGGRR-SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 366 IKTSK--KVTIEKKGT--IRKLLIRNISVHDEGEYTC------SLPDQETSAELNVVELP 415
+ + G+ I+ +L DEG Y C S +A++ V P
Sbjct: 63 LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG-P 121
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN---VTLSIDGKKQ 470
+ + + + E+ GD + W K+ +++ V + G
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178
Query: 471 KLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
L I D+G Y C + ++A + + +
Sbjct: 179 -LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD---------------------- 215
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
+ F++R E L V P P
Sbjct: 216 ------------------------PGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP 251
Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
S W R + + KK + G N L + ++ D+G Y V T + + + A +T
Sbjct: 252 SFTWLRGEEVIQLRSKKYSLLGGSN--LLISNV-TDDDSGTYTCVVTYKNENISASAELT 308
Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
V V P P + +
Sbjct: 309 VLV-----------------------------------------PPWFL-NHPSNLYAYE 326
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
D++ E P P W NG V++PS +
Sbjct: 327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQ 360
Score = 121 bits (306), Expect = 8e-30
Identities = 68/446 (15%), Positives = 109/446 (24%), Gaps = 150/446 (33%)
Query: 396 YTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGK 453
+ L D R E +G ++KW KDG
Sbjct: 3 WGSELESSHHHHHHGG-RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 454 EIAFSENV--------TLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTGDKES-KATLT 502
+A + +L I Q ++ D G Y C +GD+G S A +
Sbjct: 62 ILALGMDDRKQQLPNGSLLI----QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117
Query: 503 VEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI 562
V P F+
Sbjct: 118 VAGP----------------------------------------------------LRFL 125
Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
+ E T T+ L +V P P+I W +N + L P + + L++
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185
Query: 623 SETDAGDYKVVATNELGS-ATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQS 681
D+G Y+ A N + + A V +
Sbjct: 186 PG-DSGVYRCSARNPASTRTGNEAEVRI-------------------------------- 212
Query: 682 TEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR- 740
+ P + P V+ +G+D +E PPP W VI +
Sbjct: 213 ----LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268
Query: 741 ----------------------------------------VKGKAEFIKKLDDLEVKERE 760
V F+ +L E
Sbjct: 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESM 328
Query: 761 NAVLEVEVTSD-KADVKWFKNNSLIK 785
+ E V+ V W KN ++
Sbjct: 329 DIEFECAVSGKPVPTVNWMKNGDVVI 354
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 192 bits (489), Expect = 2e-55
Identities = 63/329 (19%), Positives = 120/329 (36%), Gaps = 34/329 (10%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDM 67
P F + V L+ ++ + E ++WY + + ++ F D
Sbjct: 4 PFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---- 58
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGK-------PEKPSILEPL 120
+ + I K++ G+Y V+ K+ G+ K + + K + L
Sbjct: 59 --GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL 116
Query: 121 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKD 177
S EG + S KV W +G I+ + L + + + D
Sbjct: 117 KIQSTAEG-IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPND 175
Query: 178 KGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS 237
KG+Y +++ + + + +L+ Y+ ++ K
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE-----------KNRARV 224
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN-THTLTLI 293
+ V+I EG++ L+ V G+P P+V W K+ K + + E T T+
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNV 322
ST D G+Y + V NK G+ S ++V
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 179 bits (456), Expect = 7e-51
Identities = 59/314 (18%), Positives = 109/314 (34%), Gaps = 44/314 (14%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLT 291
P +E L +T + +L +V + + WYKD + I D + + TL
Sbjct: 6 TGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 64
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT 351
+ + S KD G Y V + + G +S L + E + ++ + ++
Sbjct: 65 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTAE 123
Query: 352 -----------SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
+ V W +G I+ S +V G L I + +D+G+Y L
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 401 PDQ----ETSAELNV--------------------VELPPEISVPLQDVKVSRDEKASFE 436
D + + +L+ + V + + +
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLT 243
Query: 437 IELTKGD--ALVKWYKDGKEIAFSENVTLSID-GKKQKLIIFSAGLEDAGEYSCRVG-DT 492
+ GD V W K+ K +A ++ L + G+ I D+G+Y V
Sbjct: 244 CNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302
Query: 493 GDKESKATLTVEAP 506
G + S T++V P
Sbjct: 303 GSETSDFTVSVFIP 316
Score = 176 bits (447), Expect = 1e-49
Identities = 66/344 (19%), Positives = 115/344 (33%), Gaps = 57/344 (16%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
F++ L EV N +L+ +V + K + W+KD +EI +K + LLI
Sbjct: 9 HFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT--LLI 65
Query: 386 RNISVHDEGEYTCSLPDQ----ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
S D G Y L D ++ +L E+ + + + +
Sbjct: 66 TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQST-AE 123
Query: 442 GDAL------------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
G L V W +G I +S+ V + G++ L I D G+Y +
Sbjct: 124 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183
Query: 490 GDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVP 548
D + L+ +A + +
Sbjct: 184 FDGKTGHQKTVDLSGQAYDEAYA-------------------------------EFQRLK 212
Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI 608
+ +A + + T++E + L V P P + W +N K L S
Sbjct: 213 QAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLK 272
Query: 609 FD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
F+ G + + D+G Y +V N+ GS T V+V +
Sbjct: 273 FEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 131 bits (332), Expect = 5e-34
Identities = 50/334 (14%), Positives = 88/334 (26%), Gaps = 70/334 (20%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
P L +V+ + + ++ + WYKD +EI+ E
Sbjct: 4 PFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGI 60
Query: 470 QKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
L+I +DAG Y + D G +S+ L EA + + L D
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSAT--DLKI 118
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
Q +G
Sbjct: 119 QST----------------------------------------AEGIQLYSFVTYYVEDL 138
Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
+ W N + S + + GE I L++ E + D G Y + + ++
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLS 197
Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
D + Q + A V+ P V +++
Sbjct: 198 GQA--------------------YDEAYAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQE 236
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
G+ L + PPP+ W N +
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN 270
Score = 129 bits (326), Expect = 3e-33
Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 37/235 (15%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVR----------LVAVPEPDLLWYYNGE 51
S +++ + A +++ ++ V + + W +NG
Sbjct: 88 KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS 147
Query: 52 PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN---- 107
++ +D V + I ++G Y + + + + + +
Sbjct: 148 AIRYSDRVKTGVTGEQIWL----QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE 203
Query: 108 -------------TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI 154
K + V+I EG++ L+ V G+P P+V W K+ K +
Sbjct: 204 AYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 263
Query: 155 KD---RQITSEKN-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
+ E T T+ ST D G+Y + V NK G+ S ++V + P
Sbjct: 264 ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV--FIP 316
Score = 79.2 bits (195), Expect = 4e-16
Identities = 42/275 (15%), Positives = 80/275 (29%), Gaps = 58/275 (21%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGEN 613
P P F+E + V + + L KV IVW+++ + + S ++ F
Sbjct: 4 PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGI 60
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
L + E + DAG Y+V+ ++ G ++ + K +
Sbjct: 61 CTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSA------ 113
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL-VKKGEDLKIEVRFKALPPP-------- 724
+ E + V +V G ++ R K
Sbjct: 114 ----TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQIN 169
Query: 725 -------------------KAEWTVNGTVIV-------------PSKRVKGKAEFIKKL- 751
+ TV+ + + K +A + L
Sbjct: 170 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 229
Query: 752 DDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
D + ++E + L V D +V W KN +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 264
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 189 bits (480), Expect = 3e-54
Identities = 67/333 (20%), Positives = 108/333 (32%), Gaps = 57/333 (17%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 168
P E + +V S P + W KD +D ++ S+ N +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
T D G YS VT+ +G S + P V SEL
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL----- 115
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD-----RQIT 282
V I E +Q + KV + + K I + I
Sbjct: 116 ---------------AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHID 160
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--------------- 327
+ + + +D+G Y+ ++ + + T S L D K
Sbjct: 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220
Query: 328 ---EFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRK 382
F++ L EV N +L+ +V + K + + W+KD +EI +K + I
Sbjct: 221 QGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICT 277
Query: 383 LLIRNISVHDEGEYTCSLPDQ----ETSAELNV 411
LLI S D G Y L D ++ +L
Sbjct: 278 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 187 bits (477), Expect = 7e-54
Identities = 64/315 (20%), Positives = 108/315 (34%), Gaps = 47/315 (14%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTL 290
P E + +V S P + W KD +D ++ S+ N +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-----------DQGKAEFIKKLDDLEVK 339
T D G YS VT+ +G S + +K +E+
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 340 ERENAVL--EVEVTSDKADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLIRNISVHDEGE 395
E+ + E S A V + + +EI K+ I++ I ++ + + DEG
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180
Query: 396 YTCSLPDQETSAELNVVEL----------------------PPEISVPLQDVKVSRDEKA 433
YT L D + + VV + P L +V+ +
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNV 239
Query: 434 SFEIELT--KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
+ ++ K + + WYKD +EI+ E L+I +DAG Y + D
Sbjct: 240 LLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKD 297
Query: 492 T-GDKESKATLTVEA 505
G +S+ L EA
Sbjct: 298 DRGKDKSRLKLVDEA 312
Score = 187 bits (475), Expect = 2e-53
Identities = 52/330 (15%), Positives = 115/330 (34%), Gaps = 35/330 (10%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
GI P + V + + E P+ + W + +++ + + +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEA--------KMDIPVKVNTGKPEKPSILEPLH 121
+T K + + G+Y+ + +G A ++ + ++ ++
Sbjct: 60 ----MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115
Query: 122 DVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTLTLIQCST 175
V I E +Q + KV + + K I + I + + +
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175
Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEK 235
+D+G Y+ ++ + + T S L D ++ + + + +
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEW-------------IRKQG 222
Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLI 293
P +E L +T + +L +V + + WYKD + I D + + TL +
Sbjct: 223 PHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 281
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ S KD G Y V + + G +S L +
Sbjct: 282 EFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
Score = 174 bits (443), Expect = 4e-49
Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 56/342 (16%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
+ + +++ + E + + K++ W KD + S ++ +E KG K+ +++
Sbjct: 6 TKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDL 65
Query: 389 SVHDEGEYTCSLPDQETSAELNVV---------------ELPPEISVPLQDVKVSRDEKA 433
+ D G Y+C + D + A ++ + P V++ +
Sbjct: 66 GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQV 125
Query: 434 SFEIELTKG--DALVKWYKDGKEIAFSENVTLSIDGKK--QKLIIFSAGLEDAGEYSCRV 489
F ++ K +A V + + KEI + ID ++ + ED G Y+ ++
Sbjct: 126 RFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 185
Query: 490 GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPT 549
D ++ TV F
Sbjct: 186 ---QDGKATNHSTVVLVGDVFKKLQKEAEFQR---------------------------- 214
Query: 550 CPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREI 608
Q P F+E + V + + L KV IVW+++ + + K
Sbjct: 215 -QEWIRKQGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD-- 270
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
F L + E + DAG Y+V+ ++ G ++ +
Sbjct: 271 FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 311
Score = 138 bits (350), Expect = 2e-36
Identities = 47/332 (14%), Positives = 88/332 (26%), Gaps = 66/332 (19%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
+ P + +V +FE + + W KD S + + G K K+
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
G++D G YSC V DT S + E
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE------------------ 103
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVW 592
+ ++ + EKG +R + K S + +
Sbjct: 104 ---------------------HKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 651
N K + PK + D I+E+ + D G Y + + + DV
Sbjct: 143 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDV 202
Query: 652 EKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGED 711
K +++ E + P E V +
Sbjct: 203 FK----------------------KLQKEAEFQRQEWIRKQGPHFVEYLSWE--VTGECN 238
Query: 712 LKIEVRFKALPPP-KAEWTVNGTVIVPSKRVK 742
+ ++ + + W + I ++
Sbjct: 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHD 270
Score = 79.7 bits (196), Expect = 3e-16
Identities = 39/274 (14%), Positives = 75/274 (27%), Gaps = 54/274 (19%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
G P E ++ +P W ++ SP+ G
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
+ K+ + D G Y T+ G A+ +D E++ R S + V +
Sbjct: 60 MTFKDLGMD-DLGIYSCDVTDTDGIAS---SYLIDEEELKRLLALSHEHKFPTV----PV 111
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEV-LVKKGEDLKIEVRFKALPPP---------- 724
S ++ + +V + +++ ++K
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171
Query: 725 -------------------KAEWTVNGTVIVPSKR------------VKGKAEFIKKLDD 753
TV V K K F++ L
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 754 LEVKERENAVLEVEVTSDKAD--VKWFKNNSLIK 785
EV N +L+ +V + K + + W+K+ I
Sbjct: 232 -EVTGECNVLLKCKVANIKKETHIVWYKDEREIS 264
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 190 bits (484), Expect = 9e-54
Identities = 74/415 (17%), Positives = 139/415 (33%), Gaps = 38/415 (9%)
Query: 12 PPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
PPT +K+ K + + +E P P W N + S + +
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
V + EG Y A+N+ G A + +++ K E L V + EG
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSN-RIRLQVSKSPL-WPKENLDPVVVQEGAP 133
Query: 131 AVLSVQV-GGEPSPKVEWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKD-KGRYSVKVT 186
L G PSP + W + +D++++ N L +D + YS
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN-GDLYFSNVMLQDMQTDYSCNAR 192
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
P+ + L T V P
Sbjct: 193 FHFTHTIQ-------------------QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQM 233
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
+ G +L G P+P + WYK G + + E L + S +D G Y
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCL 293
Query: 307 VTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQE 365
+NK G++ ++ V + ++ + +L + E+ L + K V+W +G+
Sbjct: 294 ASNKMGSIRHTISVRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP 352
Query: 366 IKTSK--KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVEL 414
++++ T ++ R+ + Y C +A ++V+++
Sbjct: 353 LQSAPPNPNREVAGDT---IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404
Score = 180 bits (458), Expect = 4e-50
Identities = 83/451 (18%), Positives = 149/451 (33%), Gaps = 97/451 (21%)
Query: 233 PEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTH 288
+ P+I + D + ++ ++ + G P+P W ++ + KD +++ + +
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG 73
Query: 289 TLTLIQCST----KDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKEREN 343
TL + S + +G Y NK GT S L V + + LD + V+E
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAP 133
Query: 344 AVLEVEVTSD--KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLIRNISVHD-EGEYTC- 398
L+ + W E T K+V+ G L N+ + D + +Y+C
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVMLQDMQTDYSCN 190
Query: 399 ------SLPDQETSAELNV------VELPPEISVP---LQDVKVSRDEKASFEIELTKGD 443
Q+ L V E P P V R E + G
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS-GV 249
Query: 444 AL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKAT 500
+ WYK G ++ + + + L I + ED+GEY C G +
Sbjct: 250 PTPDIAWYKKGGDLPSDKAKFENFNKA---LRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
+ V+A P
Sbjct: 307 VRVKAA----------------------------------------------------PY 314
Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILEL 618
+++ + + RL+ + +P P++ W N +PL S+P RE+ I +
Sbjct: 315 WLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT 374
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
+ + Y+ +NE G A V+V
Sbjct: 375 QISSR----AVYQCNTSNEHGYLLANAFVSV 401
Score = 178 bits (452), Expect = 3e-49
Identities = 77/440 (17%), Positives = 146/440 (33%), Gaps = 75/440 (17%)
Query: 100 MDIPVK--VNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-- 154
++IP+ + + P+I + D + ++ ++ + G P+P W ++ +
Sbjct: 1 IEIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60
Query: 155 -KDRQITSEKNTHTLTLIQCST----KDKGRYSVKVTNKEGTVES-AANLNVDPYEPKES 208
KD +++ + + TL + S + +G Y NK GT S L V
Sbjct: 61 AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV-------- 112
Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKV 267
S P E L V + EG L G PSP +
Sbjct: 113 -----SKSPLWPKE------------------NLDPVVVQEGAPLTLQCNPPPGLPSPVI 149
Query: 268 EWYKDGK--LIKDRQITSEKNTHTLTLIQCSTKD-KGRYSVKVTNKEG---------TVE 315
W + +D++++ N L +D + YS T++
Sbjct: 150 FWMSSSMEPITQDKRVSQGHN-GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Query: 316 SAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
V + F+ V + +LE + D+ W+K G ++ + K
Sbjct: 209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA 268
Query: 372 VTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKV 427
L I N+S D GEY C + + + V P +++ +
Sbjct: 269 KFENFNKA---LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-APYWLDEPKNLIL 324
Query: 428 SRDEKASFEIELTKGD--ALVKWYKDGKEI-AFSENVTLSIDGKKQKLIIFSAGLEDAGE 484
+ E G+ V+W +G+ + + N + G +I +
Sbjct: 325 APGEDGRLVCR-ANGNPKPTVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQISSRAV 381
Query: 485 YSCRVG-DTGDKESKATLTV 503
Y C + G + A ++V
Sbjct: 382 YQCNTSNEHGYLLANAFVSV 401
Score = 131 bits (330), Expect = 5e-33
Identities = 78/446 (17%), Positives = 130/446 (29%), Gaps = 109/446 (24%)
Query: 313 TVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
++ + + Q + D V R+N ++E E + W ++ + +K
Sbjct: 4 PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63
Query: 372 VTIEKKGTIRKLLIRNISVH----DEGEYTCSL-----PDQETSAELNVVELPPEISVPL 422
+ + L+I S EGEY C L V + P L
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123
Query: 423 QDVKVSRDEKASFEIELTKG--DALVKWYKDGKE-IAFSENVTLSIDGKKQKLIIFSAGL 479
V V + + G ++ W E I + V+ +G L + L
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVML 180
Query: 480 EDA-GEYSC----RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
+D +YSC T +++ TL V
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPS------------------- 221
Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
F+ P + V + L P P I W++
Sbjct: 222 ----------FMYPQ-------------GTASSQMVLRGMDLLLECIASGVPTPDIAWYK 258
Query: 595 NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 654
L S K E F+ L + SE D+G+Y +A+N++GS H V
Sbjct: 259 KGGDLPSDKAKFENFNK---ALRITNV-SEEDSGEYFCLASNKMGSIRHTISVR------ 308
Query: 655 GRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKI 714
V+ AP P +++ GED ++
Sbjct: 309 -----------------------------------VKAAPYWL-DEPKNLILAPGEDGRL 332
Query: 715 EVRFKALPPPKAEWTVNGTVIVPSKR 740
R P P +W VNG + +
Sbjct: 333 VCRANGNPKPTVQWMVNGEPLQSAPP 358
Score = 95.7 bits (238), Expect = 4e-21
Identities = 58/434 (13%), Positives = 105/434 (24%), Gaps = 137/434 (31%)
Query: 404 ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENV 461
+ S + + + P +D V + E E KG+ W ++ + +++
Sbjct: 6 DPSIQNELTQPPTITKQSAKDHIVDPRDNILIECE-AKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 462 TLSIDGKKQKLIIF----SAGLEDAGEYSCRV-GDTGDKES-KATLTVEAPAVEFLTKLP 515
+S+ + L+I E GEY C G S + L V
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS--------- 115
Query: 516 SVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK-TVKEKG 574
PL+ + + V+E
Sbjct: 116 -------------------------------------------PLWPKENLDPVVVQEGA 132
Query: 575 TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
+ L P+P I W ++ ++ K+ + L + DY
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD--LYFSNVMLQDMQTDYSCN 190
Query: 634 ATNELGSAT-HGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVET 692
A T+ V P
Sbjct: 191 ARFHFTHTIQQKNPFTLKVLTTRGVA---------------------------ERTPSFM 223
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------ 740
P +V +G DL +E +P P W G + K
Sbjct: 224 YP---QGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280
Query: 741 ----------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD- 771
VK ++ + +L + E+ L +
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP 340
Query: 772 KADVKWFKNNSLIK 785
K V+W N ++
Sbjct: 341 KPTVQWMVNGEPLQ 354
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 187 bits (477), Expect = 5e-53
Identities = 84/415 (20%), Positives = 146/415 (35%), Gaps = 47/415 (11%)
Query: 10 GIPPTFSKKTKPVYAEENSE---VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
G P F ++ V +SE V L + P+P + W NG + + +S
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
S++ K ++ G Y +A N G K+ E VS+
Sbjct: 63 -----SLLINNPNKTQDAGTYQCIATNSFGTIVSR-EAKLQFAYLENFKT-RTRSTVSVR 115
Query: 127 EGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSV 183
G+ VL W + +R+ S++ L + + D G Y+
Sbjct: 116 RGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET-GNLYIAKVEKSDVGNYTC 174
Query: 184 KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
VTN + PP + + + +P ++
Sbjct: 175 VVTNTVTNHKVLG-------------------PPTPLILRNDGVMGEYEP--KIEVQFPE 213
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 302
V +G + L G P P + W + DGK I + + N L + +D G
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-GILEIPNFQQEDAGS 272
Query: 303 YSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFK 361
Y N G + L + +++ ++D+ V E+ E + K +W K
Sbjct: 273 YECVAENSRGKNVAKGQLTF-YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 331
Query: 362 DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
+G + T ++ IE +GT L I +++ D G Y C +SAEL+V+
Sbjct: 332 NGDPLLTRDRIQIE-QGT---LNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 175 bits (446), Expect = 1e-48
Identities = 85/448 (18%), Positives = 142/448 (31%), Gaps = 96/448 (21%)
Query: 231 GKPEKPSILEPLHDVSI---TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITS 283
G P ++ V +E + LS +V G P P + W +G + R
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERE 342
+ + + T+D G Y TN GT+ S A L + + + V+ +
Sbjct: 61 DGSLLINNPNK--TQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ 118
Query: 343 NAVLEVEVTSD--KADVKWFKDGQEIKT-SKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
VL + W + +++ ++ G L I + D G YTC
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCV 175
Query: 400 -----LPDQETSAELNVV--------ELPPEISV-PLQDVKVSRDEKASFEIELTKGDAL 445
+ ++ E P+I V + V + E G+ +
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPV 234
Query: 446 --VKWYK-DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATL 501
+ W + DGK IA S L I + EDAG Y C G +K L
Sbjct: 235 PTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 502 TVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLF 561
T A P +
Sbjct: 291 TFYAQ----------------------------------------------------PNW 298
Query: 562 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 621
++ + V + ++ K P P+ W +N PLL+ + +I G I + +
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RIQIEQGTLNITIVNLS 357
Query: 622 DSETDAGDYKVVATNELGSATHGARVTV 649
D+ G Y+ VA N+ G A ++V
Sbjct: 358 DA----GMYQCVAENKHGVIFSSAELSV 381
Score = 172 bits (438), Expect = 1e-47
Identities = 77/426 (18%), Positives = 129/426 (30%), Gaps = 72/426 (16%)
Query: 109 GKPEKPSILEPLHDVSI---TEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITS 161
G P ++ V +E + LS +V G P P + W +G + R
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVV 220
+ + + T+D G Y TN GT+ S A L +
Sbjct: 61 DGSLLINNPNK--TQDAGTYQCIATNSFGTIVSREAKLQF------------AYLENFKT 106
Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK-- 277
VS+ G+ VL W +
Sbjct: 107 -------------------RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD 147
Query: 278 DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN---LNVDQGKAE------ 328
+R+ S++ L + + D G Y+ VTN + L +
Sbjct: 148 NRRFVSQET-GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPK 206
Query: 329 -FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
++ + + ++ LE + + W + + K + G L I
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI---LEIP 263
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
N D G Y C S +L P + D+ V+ +E +E + G
Sbjct: 264 NFQQEDAGSYECVAENSRGKNVAKGQLTFYA-QPNWVQIINDIHVAMEESVFWECK-ANG 321
Query: 443 D--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKA 499
+W K+G + + + + + L I L DAG Y C G S A
Sbjct: 322 RPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSA 377
Query: 500 TLTVEA 505
L+V A
Sbjct: 378 ELSVIA 383
Score = 156 bits (395), Expect = 8e-42
Identities = 59/324 (18%), Positives = 103/324 (31%), Gaps = 49/324 (15%)
Query: 8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSD 66
+ ++ V + L E W +N P + + S ++
Sbjct: 98 FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET- 156
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEA---KMDIPVKVNT----GKPEKPSILEP 119
+ I ++K + G YT V N P+ + G+ E ++
Sbjct: 157 -----GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF 211
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDK 178
V +G + L G P P + W + DGK I + + N L + +D
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN-GILEIPNFQQEDA 270
Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
G Y N G + L +P+
Sbjct: 271 GSYECVAENSRGKNVAKGQLTFY--------------------------------AQPNW 298
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
++ ++D+ + ES + G P P W K+G + R + TL + +
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-GTLNITIVNLS 357
Query: 299 DKGRYSVKVTNKEGTVESAANLNV 322
D G Y NK G + S+A L+V
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSV 381
Score = 135 bits (341), Expect = 1e-34
Identities = 68/428 (15%), Positives = 123/428 (28%), Gaps = 106/428 (24%)
Query: 329 FIKKLDDLEVK---ERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV-TIEKKGTIRKL 383
F+++ + E + L EV + K ++W +G ++ G+ L
Sbjct: 8 FVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS---L 64
Query: 384 LIRNIS-VHDEGEYTCSLPDQE-----TSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
LI N + D G Y C + A+L L + V V R +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 438 ELTKG--DALVKWYKDGKEIAF-SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGD 494
+ W + + G L I D G Y+C V
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVV----- 176
Query: 495 KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS 554
+ T ++ P + I+ +
Sbjct: 177 -TNTVT----------------------------NHKVLGPPTPL------ILRNDGVMG 201
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
+ + ++ E ++ T++L +P P+I+W R + ++ +R +G
Sbjct: 202 EYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG--- 258
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
ILE+ E DAG Y+ VA N G ++T
Sbjct: 259 ILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLT-------------------------- 291
Query: 675 IDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
P ++ V E + E + P P W NG
Sbjct: 292 ---------------FYAQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 735 IVPSKRVK 742
++ R++
Sbjct: 336 LLTRDRIQ 343
Score = 86.4 bits (214), Expect = 3e-18
Identities = 64/421 (15%), Positives = 111/421 (26%), Gaps = 140/421 (33%)
Query: 415 PPEISVPLQDVKV---SRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGK 468
P V S ++K E KG+ ++W +G ++ + S+ DG
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCE-VKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 469 KQKLIIFSAG-LEDAGEYSCRV-GDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGD 525
L+I + +DAG Y C G S +A L F T+ S
Sbjct: 64 ---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE-NFKTRTRSTV------- 112
Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
+V+ + L+
Sbjct: 113 -------------------------------------------SVRRGQGMVLLCGPPPH 129
Query: 586 -PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
S W N P ++ + N L + + ++D G+Y V TN + +
Sbjct: 130 SGELSYAWIFNEYPSYQDNRRFVSQETGN--LYIAKV-EKSDVGNYTCVVTNTVTNHKVL 186
Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
T + + E P I+ P V
Sbjct: 187 GPPTPLILRNDGV-------------------------------MGEYEPKIEVQFPETV 215
Query: 705 LVKKGEDLKIEVRFKALPPPKAEWT-VNGTVIVPSKR----------------------- 740
+KG +K+E P P W +G I R
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275
Query: 741 ----------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSL 783
+ +++ ++D+ V E+ E + K +W KN
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 784 I 784
+
Sbjct: 336 L 336
Score = 67.6 bits (165), Expect = 5e-12
Identities = 32/192 (16%), Positives = 54/192 (28%), Gaps = 50/192 (26%)
Query: 555 PGQAPLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-D 610
PG P+F++ E+ ++L +VK +P P I W N + R D
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHV 669
G +I + DAG Y+ +ATN G+ + A++
Sbjct: 62 GSLLINNPNK---TQDAGTYQCIATNSFGTIVSREAKLQ--------------------- 97
Query: 670 HHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPPKAEW 728
V V++G+ + + W
Sbjct: 98 --------------------FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW 137
Query: 729 TVNGTVIVPSKR 740
N R
Sbjct: 138 IFNEYPSYQDNR 149
Score = 29.0 bits (65), Expect = 6.1
Identities = 18/141 (12%), Positives = 32/141 (22%), Gaps = 48/141 (34%)
Query: 692 TAPVI--DPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSK---------- 739
+ PV +P L + + +K+ K P P W +NGT +
Sbjct: 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63
Query: 740 ---------------------------------RVKGKAEFIKK-LDDLEVKERENAVLE 765
+ F + + V+ + VL
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123
Query: 766 VEVTSD--KADVKWFKNNSLI 784
+ W N
Sbjct: 124 CGPPPHSGELSYAWIFNEYPS 144
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 191 bits (486), Expect = 7e-53
Identities = 64/545 (11%), Positives = 133/545 (24%), Gaps = 92/545 (16%)
Query: 8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
L + V + ++ +TL+V + A LW + L ++
Sbjct: 44 LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR--- 100
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
V + I + + + G Y + ++ + V + E
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI----RNTLLYTLRRPYFRKME 154
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
+ A L P P VEW + + S + N
Sbjct: 155 NQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARN 212
Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
+ G + L T+ + + P P + +
Sbjct: 213 ELGR---------------------------ECTRLFTIDL----NQTPQTTLP--QLFL 239
Query: 248 TEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEK---------NTHTLTLIQCST 297
GE + + + W + K +++ + +
Sbjct: 240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV-DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 355
D G Y+ + +A + + ++G +D E+ + E V + +
Sbjct: 300 NDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356
Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
W + +K + H GEY LN+
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNG----YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYK-DGKEIAFSENVTLSIDGK 468
P++ ++ + + G W K K +E +T + +
Sbjct: 413 RR-KPQV--------LAEASASQASCF-SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNR 462
Query: 469 KQ----------KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSV 517
K + + C G L P F+ +
Sbjct: 463 KANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF-PFIQDGGTK 521
Query: 518 TLVPH 522
H
Sbjct: 522 HHHHH 526
Score = 191 bits (485), Expect = 1e-52
Identities = 77/627 (12%), Positives = 157/627 (25%), Gaps = 123/627 (19%)
Query: 64 QSDMHSYVSIVTIKSIKK---REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
D+ ++ + Y +V+++ E +P+ +
Sbjct: 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGC--------ALRPQSSGTVYEA 55
Query: 121 HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKDK 178
V + S L V V + W + + + ++ +++ +
Sbjct: 56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQA 115
Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
G Y + + ++ +++
Sbjct: 116 GEYLLFIQSEATNYTILFTVSI--------------------------------RNTLLY 143
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
E + A L P P VEW + + S +
Sbjct: 144 TLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HEL 201
Query: 299 DKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT--SDKA 355
N+ G + +++ L L +K E + + +
Sbjct: 202 FGTDIRCCARNELGRECTRLFTIDL---NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258
Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIR------KLLIRNISVHDEGEYTCSLPDQE-TSAE 408
+ W + + ++ + T R + +++ +D G YTCS SA
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318
Query: 409 LNVVELP-PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI 465
+ +VE + +D ++ + E+ F + K W K + +
Sbjct: 319 VTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKGLDN- 376
Query: 466 DGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
+ F GEY D TL + P V
Sbjct: 377 ---GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK--------PQVLAEASAS 425
Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
A+ + P W ++P E E K ++ + +
Sbjct: 426 QASCFSD-GYPLPSWTWKK----------CSDKSPNCTEEITEGVWNRKANRKVFGQWVS 474
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
S L + EA K A N LG++
Sbjct: 475 S----------------------------STLNMSEAI---KGFLVKCCAYNSLGTSCET 503
Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHH 671
+ G P ++H HH
Sbjct: 504 ILLNS----PGPFPFIQDGGTKHHHHH 526
Score = 114 bits (287), Expect = 6e-27
Identities = 48/457 (10%), Positives = 116/457 (25%), Gaps = 117/457 (25%)
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-K 354
S Y + + E + + + + +EV + L+V V +
Sbjct: 23 SVGKSSSYPMVSESPEDL-----GCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV--- 411
W + ++ +G + ++I ++ GEY + + T+ +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRG-VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
+ ++ + ++ A I + + +V+W + + + ++ K++K
Sbjct: 137 IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 472 LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
++ + C + +E T++
Sbjct: 197 VLHEL----FGTDIRCCARNELGRECTRLFTIDLN------------------------- 227
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSI 590
+ +K + + K + +
Sbjct: 228 ---------------------------QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGL 260
Query: 591 VWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGDYKVVATNELGSATHG 644
W NK L + + D G Y ++ +
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSKHPSQS--- 316
Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
A VT+ VEK + +
Sbjct: 317 ALVTI------------------------------------VEKGF----INATNSSEDY 336
Query: 705 LVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
+ + E+ VRFKA P + WT + ++
Sbjct: 337 EIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG 373
Score = 96.7 bits (240), Expect = 4e-21
Identities = 51/462 (11%), Positives = 97/462 (20%), Gaps = 157/462 (33%)
Query: 377 KGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFE 436
K + + SV Y E + + V+V + +
Sbjct: 11 KCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEA-AAVEVDVSASITLQ 69
Query: 437 IELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGD 494
+ + G+ W + + L G ++I AGEY + + +
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATN 128
Query: 495 KESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGS 554
T+++
Sbjct: 129 YTILFTVSIRNT------------------------------------------------ 140
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGEN 613
L+ R E L+ ++ P P + W + S ++ + E
Sbjct: 141 ----LLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
+L E D + A NELG T+D
Sbjct: 196 KVL------HELFGTDIRCCARNELGRECTRL-FTID----------------------- 225
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKAL-PPPKAEWTVNG 732
+ P P++ +K GE L I + + W +
Sbjct: 226 ----------------LNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN 266
Query: 733 TVIVPSKR------------------------------------------------VKGK 744
+ KG
Sbjct: 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGF 326
Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+D E+ + E V + + W +
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 182 bits (464), Expect = 5e-52
Identities = 61/329 (18%), Positives = 101/329 (30%), Gaps = 47/329 (14%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHT 167
E P ++ D G A Q G+P P+V W K GK + + E
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 168 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
L + T D+ Y N G + A L V L
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV-------------------------L 99
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
+ + P+I + +A + G P P++ W+KD +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA---ANLNVDQGKAEFIKKLDDLEVKE 340
+ + L + D+G+Y TN G S+ + V F E+
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
N + VKW + +++ + + + ++ V D YTC
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG------RNVLELTDVKDSANYTCV 273
Query: 399 ---SLPDQETSAELNVVELPPEISVPLQD 424
SL E A++ V LP +
Sbjct: 274 AMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
Score = 180 bits (458), Expect = 3e-51
Identities = 57/329 (17%), Positives = 104/329 (31%), Gaps = 44/329 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP F K+ K + + P+P + W G+ +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES---AG 62
Query: 72 SIVTIKSIKKRE-EGVYTVVAKNREGEAKMDIPVKV---NTGKPEKPSILEPLHDVSITE 127
+++ I+ ++ E VY VA+N GE + + V + P+I +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
+A + G P P++ W+KD + + + L + D+G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 185 VTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
TN G S+ ANL V + P
Sbjct: 183 ATNSAGVRYSSPANLYV-----------------------------RVQNVAPRFSILPM 213
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
I G + ++ G P P V+W + + + + L KD Y
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---EDDMPVGRNVLELTDVKDSANY 270
Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKK 332
+ + G +E+ A + V + + K
Sbjct: 271 TCVAMSSLGVIEAVAQITV-KSLPKAGTK 298
Score = 168 bits (427), Expect = 6e-47
Identities = 54/295 (18%), Positives = 100/295 (33%), Gaps = 29/295 (9%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDRQITSEKNTHT 289
E P ++ D G A Q G+P P+V W K GK + + E
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 290 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV------DQGKAEFIKKLDDLEVKERE 342
L + T D+ Y N G + A L V G V+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR 124
Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--- 398
A + + + ++ WFKD + S K+ L I + D+G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT 184
Query: 399 ----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDG 452
+ + V + P S+ ++ + G VKW +
Sbjct: 185 NSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV-GSPMPYVKWMQGA 243
Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
+++ +++ + + ++ ++D+ Y+C G E+ A +TV++
Sbjct: 244 EDLTPEDDMPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSL 292
Score = 142 bits (360), Expect = 8e-38
Identities = 74/365 (20%), Positives = 117/365 (32%), Gaps = 81/365 (22%)
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE-KKGTIR 381
+ FIK+ D A + T D K V W K G+++ + + TIE +
Sbjct: 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 382 KLLIRNISVH-DEGEYTC----SLPDQETSAELNVVELP------PEISVPLQDVKVSRD 430
L I+ + DE Y C S+ + A+L V+ P I + Q V R
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 431 EKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
A+ + G+ + W+KD + S + + L I S+ D G+Y C
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 489 VG-DTGDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFI 546
G + S A L V V
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNV-------------------------------------- 204
Query: 547 VPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR 606
AP F + G + + SP P + W + + L
Sbjct: 205 -----------APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE---D 250
Query: 607 EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDR 666
++ G N++ E D+ +Y VA + LG A++TV P
Sbjct: 251 DMPVGRNVL----ELTDVKDSANYTCVAMSSLGVIEAVAQITVKS-----LP--KAGTKH 299
Query: 667 NHVHH 671
+H HH
Sbjct: 300 HHHHH 304
Score = 127 bits (320), Expect = 2e-32
Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 22/214 (10%)
Query: 6 DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS 65
D L P + E T+ P+P++ W+ + P+ + Q
Sbjct: 102 DQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161
Query: 66 DMHSYVSIVTIKSIKKREEGVYTVVAKNREGE---AKMDIPVKVNTGKPEKPSILEPLHD 122
+ + I+S ++ ++G Y VA N G + ++ V+V + P
Sbjct: 162 RSGA----LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV---QNVAPRFSILPMS 214
Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
I G + ++ G P P V+W + + + + L KD Y+
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---EDDMPVGRNVLELTDVKDSANYT 271
Query: 183 VKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
+ G +E+ A + V ++ P
Sbjct: 272 CVAMSSLGVIEAVAQITV---------KSLPKAG 296
Score = 109 bits (275), Expect = 1e-26
Identities = 64/337 (18%), Positives = 95/337 (28%), Gaps = 92/337 (27%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKK 469
E PP +D ASF + T GD V W K GK++ T+ D
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 470 QK-LIIFSAGL-EDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
L I D Y C ++ G+ A LTV
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRED------------------- 102
Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
P P + K V+ T ++ +P
Sbjct: 103 --------------------------QLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGA 645
P I WF++ P+ S I + L+++ + ETD G Y+ VATN G + A
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS-EETDQGKYECVATNSAGVRYSSPA 195
Query: 646 RVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL 705
+ V V+ V AP P
Sbjct: 196 NLYVRVQNV--------------------------------------APRFS-ILPMSHE 216
Query: 706 VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+ G ++ I P P +W + P +
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP 253
Score = 94.9 bits (236), Expect = 2e-21
Identities = 40/277 (14%), Positives = 75/277 (27%), Gaps = 84/277 (30%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENII 615
+ P FI+ +++ G + + P P + W + K + S + F + +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
L ++ + D Y+ VA N +G T A++TV E
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE----------------------- 101
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
++ P ID P +V V++ + P P+ W + +
Sbjct: 102 -----------DQLPSGFPNIDMGPQLKV-VERTRTATMLCAASGNPDPEITWFKDFLPV 149
Query: 736 VPSKR--------------------------------------------VKGKAE---FI 748
PS V+ + F
Sbjct: 150 DPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFS 209
Query: 749 KKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
E+ N + VKW + +
Sbjct: 210 ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246
Score = 42.5 bits (100), Expect = 4e-04
Identities = 16/149 (10%), Positives = 29/149 (19%), Gaps = 54/149 (36%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG----------------- 732
E P P + G + P P+ W G
Sbjct: 3 GEEPPRFIKEPKD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 733 -----------------------------------TVIVPSKRVKGKAEFIKKLDDLEVK 757
TV+ + G V+
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 758 ERENAVLEVEVTSD-KADVKWFKNNSLIK 785
A + + + ++ WFK+ +
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVD 150
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 183 bits (466), Expect = 2e-51
Identities = 75/412 (18%), Positives = 133/412 (32%), Gaps = 47/412 (11%)
Query: 12 PPTFSKKTKPVYAEENSE---VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
P F ++ E S VTL R A P W NG L+ + + +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-- 61
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+V +K ++ G Y VA N G + G ++ S E V ITEG
Sbjct: 62 ---DLVISNPVKAKDAGSYQCVATNARGTVVSR-EASLRFGFLQEFSA-EERDPVKITEG 116
Query: 129 ESAVLSVQV-GGEPSPKVEWYKDGK---LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
+ + P+ W + + D + + T L + + D G YS
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176
Query: 185 VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHD 244
T+ + + +P + D
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPS--------------------IKAKFPAD 216
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 304
G+ L G P P+++W K + ++SE L + +D+G Y
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP---LLHIQNVDFEDEGTYE 273
Query: 305 VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDG 363
+ N +G + + + +++ + D E + + + V+W +DG
Sbjct: 274 CEAENIKGRDTYQGRIII-HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG 332
Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
Q + + ++ + G L + + D G Y C SAEL V
Sbjct: 333 QPLASQNRIEVS-GGE---LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 166 bits (423), Expect = 1e-45
Identities = 75/445 (16%), Positives = 122/445 (27%), Gaps = 100/445 (22%)
Query: 236 PSILEPLHDVSITEG---ESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTH 288
P E EG E L+ + P W +G +K R +
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
++ KD G Y TN GTV S A+L + ++ D +++ E +
Sbjct: 65 ISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 348 VEVTSD--KADVKWFKDGQEI---KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC---- 398
+W + ++ + G L I D G Y+C
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCFATS 179
Query: 399 -----------SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--AL 445
+AE P + D + + E G+
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF-GNPVPQ 238
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
+KW K L I + ED G Y C G + + +
Sbjct: 239 IKWRKLDGSQ----TSKWLSSEPL--LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
A P +++
Sbjct: 293 AQ----------------------------------------------------PDWLDV 300
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE 624
+ +R P P++ W R+ +PL S + E+ GE +L DS
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN-RIEVSGGELRFSKLVLEDS- 358
Query: 625 TDAGDYKVVATNELGSATHGARVTV 649
G Y+ VA N+ G+ A +TV
Sbjct: 359 ---GMYQCVAENKHGTVYASAELTV 380
Score = 165 bits (418), Expect = 7e-45
Identities = 78/423 (18%), Positives = 123/423 (29%), Gaps = 76/423 (17%)
Query: 114 PSILEPLHDVSITEG---ESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKNTH 166
P E EG E L+ + P W +G +K R +
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVVSELDT 225
++ KD G Y TN GTV S A+L +
Sbjct: 65 ISNPVK--AKDAGSYQCVATNARGTVVSREASLRF------------GFLQEFSA----- 105
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGK---LIKDRQI 281
E V ITEG + + P+ W + + D +
Sbjct: 106 --------------EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR 151
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE-----------FI 330
+ T L + + D G YS T+ + + Q
Sbjct: 152 FVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA 211
Query: 331 KKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNIS 389
K D + LE + +KW K + + + L I+N+
Sbjct: 212 KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPL---LHIQNVD 265
Query: 390 VHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD-- 443
DEG Y C + + P+ + D + + G
Sbjct: 266 FEDEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCV-ASGKPR 323
Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLT 502
V+W +DG+ +A + +S G+ L LED+G Y C G + A LT
Sbjct: 324 PAVRWLRDGQPLASQNRIEVS-GGE---LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Query: 503 VEA 505
V+A
Sbjct: 380 VQA 382
Score = 145 bits (367), Expect = 4e-38
Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 51/326 (15%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQ-ETDEVVFSDQ 64
+ +++ PV E V P W N P D F Q
Sbjct: 96 RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155
Query: 65 SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK-------MDIPVKVNTGKPEKPSIL 117
+ + Y I + + G Y+ A + + + + PSI
Sbjct: 156 TTGNLY-----IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIK 210
Query: 118 -EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
+ D G+ L G P P+++W K + ++SE L + +
Sbjct: 211 AKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP---LLHIQNVDFE 267
Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
D+G Y + N +G + + +P
Sbjct: 268 DEGTYECEAENIKGRDTYQGRIIIH--------------------------------AQP 295
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
L+ + D G S G+P P V W +DG+ + + L +
Sbjct: 296 DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLV 354
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNV 322
+D G Y NK GTV ++A L V
Sbjct: 355 LEDSGMYQCVAENKHGTVYASAELTV 380
Score = 128 bits (322), Expect = 3e-32
Identities = 57/429 (13%), Positives = 102/429 (23%), Gaps = 108/429 (25%)
Query: 329 FIKKLDDLEVKE---RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKK-GTIRKL 383
F ++ E E L ++ A +W +G E+K G + +
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL--V 64
Query: 384 LIRNISVHDEGEYTCSLPDQE-----TSAELNVVELPPEISVPLQDVKVSRDEKASFEIE 438
+ + D G Y C + A L L + VK++ F
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 439 LTKG--DALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
+W + + G L I D G YSC
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCF----- 176
Query: 494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG 553
AT ++ + + K+ L +
Sbjct: 177 --------------------------------ATSHIDFITKSVFSKFSQLSLAAEDARQ 204
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
+ + + + L +P P I W + + K +
Sbjct: 205 YA--PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ---TSKWLSSEP-- 257
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
+L ++ D G Y+ A N G T+ R+
Sbjct: 258 -LLHIQNV-DFEDEGTYECEAENIKGRDTYQGRII------------------------- 290
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
+ P + G DL+ P P W +G
Sbjct: 291 ----------------IHAQPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333
Query: 734 VIVPSKRVK 742
+ R++
Sbjct: 334 PLASQNRIE 342
Score = 113 bits (284), Expect = 3e-27
Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 15/195 (7%)
Query: 6 DILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS 65
D + P +K YA VTLE P P + W S
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT----------S 250
Query: 66 DMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSI 125
S ++ I+++ +EG Y A+N +G + ++ +P L+ + D
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH----AQPDWLDVITDTEA 306
Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
G S G+P P V W +DG+ + + L + +D G Y
Sbjct: 307 DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLVLEDSGMYQCVA 365
Query: 186 TNKEGTVESAANLNV 200
NK GTV ++A L V
Sbjct: 366 ENKHGTVYASAELTV 380
Score = 88.0 bits (218), Expect = 9e-19
Identities = 50/417 (11%), Positives = 100/417 (23%), Gaps = 132/417 (31%)
Query: 415 PPEISVPLQDVKV---SRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
P S +EK + + + A +W +G E+ + +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCR-ARANPPATYRWKMNGTELKMGPDSRYRLVA-- 60
Query: 470 QKLIIFSAG-LEDAGEYSCRV-GDTGDKES-KATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
L+I + +DAG Y C G S +A+L
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQ------------------- 101
Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS- 585
E + + E +
Sbjct: 102 --------------------------------EFSAEERDPVKITEGWGVMFTCSPPPHY 129
Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
PA S W N P R L + + ++ D G+Y AT+ + T
Sbjct: 130 PALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSCFATSHIDFITK-- 186
Query: 646 RVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL 705
++ S + E + AP I P +
Sbjct: 187 ----------------------------SVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 706 VKKGEDLKIEVRFKALPPPKAEWT------------VNGTVIVPSKR------------- 740
G+ + +E P P+ +W + + +
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 741 ------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
+ + +++ + D E + + + V+W ++ +
Sbjct: 279 IKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL 335
Score = 60.3 bits (146), Expect = 9e-10
Identities = 29/186 (15%), Positives = 46/186 (24%), Gaps = 46/186 (24%)
Query: 557 QAPLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
P+F E+ E + + L + +A+P + W N L P R +
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
L + DAG Y+ VATN G+
Sbjct: 63 --LVISNPVKAKDAGSYQCVATNARGTVV------------------------------- 89
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPPKAEWTVNG 732
S E + V + +G + P W +N
Sbjct: 90 -------SREASLR--FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140
Query: 733 TVIVPS 738
Sbjct: 141 FPNFIP 146
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 187 bits (476), Expect = 2e-51
Identities = 68/633 (10%), Positives = 142/633 (22%), Gaps = 157/633 (24%)
Query: 82 REEGVYT----VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV 137
R + ++ + + G ++ + P PSI D+ + G+ L
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGE----PSPPSIHPGKSDLIVRVGDEIRLLCTD 60
Query: 138 GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
G V+W + T+E + + + G+Y+ + ++
Sbjct: 61 PGF----VKWTFEI-----LDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIY 108
Query: 198 LNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSV 257
+ V + + + E ++
Sbjct: 109 VFV--------------------------------RDPAKLFLVDRSLYGKEDNDTLVRC 136
Query: 258 QVGGEPSPKVEWYK--DGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTV 314
+ P K GK + + + + V + +V
Sbjct: 137 PLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195
Query: 315 ESA-ANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKT 368
S L V ++E E + + W ++ + K
Sbjct: 196 LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKL 255
Query: 369 SKKVTIEKKGTIRK-----LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
+K G L I + V+D G + C + + L VV+ I+
Sbjct: 256 QEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVD-KGFIN 314
Query: 420 VP---LQDVKVSRDEKASFEIELTKGDA--LVKWYKDGKEIAFSENVTLSIDGKKQ---- 470
+ V V+ E +E +W + + +
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 471 -KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
+L + + G Y+ V + + V P + L +
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK--------PEILTYDRLVNGML 426
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
C P P
Sbjct: 427 --------------------QC------------------------------VAAGFPEP 436
Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADS-----------ETDAGDYKVVATNE 637
+I W+ D + + G + A N+
Sbjct: 437 TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYND 496
Query: 638 LGSATHGARVTVDVEKVGRPPINSIDIDRNHVH 670
+G + I +H H
Sbjct: 497 VGKTSAYFNFAFKG-----NNKEQIHPHHHHHH 524
Score = 179 bits (454), Expect = 1e-48
Identities = 69/552 (12%), Positives = 133/552 (24%), Gaps = 109/552 (19%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP+ + E+ L + W + +
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLCT----DPGFVKWTFEILDETN------------ENKQ 79
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ + + G YT K+ + + V P K + + E
Sbjct: 80 NEWITEKAEATNTGKYTCTNKHGLSNS-----IYVFVRDPAKLFL--VDRSLYGKEDNDT 132
Query: 132 VLSVQVGGEPSPKVEWYK--DGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNK 188
++ + P K GK + + + + V +
Sbjct: 133 LVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE 191
Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
+V S L+V P + +
Sbjct: 192 GKSVLSEKF---------------------------ILKVRPAFKAVPVVSVSKASYLLR 224
Query: 249 EGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQI--------TSEKNTHTLTLIQCSTKD 299
EGE ++ + S W ++ K ++ + + TLT+ D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284
Query: 300 KGRYSVKVTNKEGTVESAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTSD--K 354
G + N G+ L V K + V + EN L VE +
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEV-VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKP 343
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISVHDEGEYTC----SLPDQET 405
+W + + + + +L + + + G YT S +
Sbjct: 344 EHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAI 403
Query: 406 SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTL 463
+ + V PEI + R + G + WY L
Sbjct: 404 AFNVY-VNTKPEI------LTYDRLVNGMLQCV-AAGFPEPTIDWYFCPGTEQRCSASVL 455
Query: 464 SIDGKKQK------------LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEF 510
+D + I S+ + G C+ D G + +
Sbjct: 456 PVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN---- 511
Query: 511 LTKLPSVTLVPH 522
+ PH
Sbjct: 512 ----NKEQIHPH 519
Score = 144 bits (365), Expect = 7e-37
Identities = 55/341 (16%), Positives = 100/341 (29%), Gaps = 71/341 (20%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMH- 68
P S E E T+ + V W + ++ D +
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL---EPLHDVSI 125
+ +TI S + + GV+ A N G A + ++V +K I V +
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV----DKGFINIFPMINTTVFV 325
Query: 126 TEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQ--------ITSEKNTHTLTLIQCSTK 176
+GE+ L V+ P P+ +W + D+ ++ + L L +
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385
Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
+ G Y+ V+N + A N+ V+ KP
Sbjct: 386 EGGTYTFLVSNSDVNAAIAFNVYVN--------------------------------TKP 413
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK---------------DGKLIKDRQI 281
I ++ + +L G P P ++WY D + +
Sbjct: 414 EI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
K ++ + K G K N G + N
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF 508
Score = 132 bits (333), Expect = 9e-33
Identities = 56/455 (12%), Positives = 108/455 (23%), Gaps = 109/455 (23%)
Query: 297 TKDKGRYS----VKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS 352
+ + + + + G+ + + + DL V+ + L
Sbjct: 4 ARGAWDFLCVLLLLLRVQTGSSQPSVSPGE-PSPPSIHPGKSDLIVRVGDEIRLLCTDP- 61
Query: 353 DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVV 412
VKW + + K + + G+YTC+ +++ V
Sbjct: 62 --GFVKWTFEILDETNENKQNE--------WITEKAEATNTGKYTCTNKHGLSNSIYVFV 111
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P ++ + + + D LT + K + +++ D K +
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIM 171
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
I C V G ++
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPA------------------------ 207
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIV 591
P+ ++E + +K +
Sbjct: 208 ----------------------FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYST 245
Query: 592 WFRNNKPLLSSPKKREIFDGENI-----ILELKEADSETDAGDYKVVATNELGSATHGAR 646
W R N K G+ L + A D+G + A N GSA
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DSGVFMCYANNTFGSANVTTT 304
Query: 647 VTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLV 706
+ V V+K I P V V
Sbjct: 305 LEV------------------------------------VDKGF---INIFPMINTTVFV 325
Query: 707 KKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPSKR 740
GE++ + V ++A P P+ +W
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE 360
Score = 87.8 bits (217), Expect = 3e-18
Identities = 52/433 (12%), Positives = 100/433 (23%), Gaps = 123/433 (28%)
Query: 392 DEGEYTCSLPDQ--------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD 443
++ C L + S PP I D+ V ++
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-PPSIHPGKSDLIVRVGDEIRLLCT---DP 61
Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
VKW + + + + K+ + I A + G+Y+C + + V
Sbjct: 62 GFVKWTFEILD--------ETNENKQNEWITEKAEATNTGKYTCTN--KHGLSNSIYVFV 111
Query: 504 EAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE 563
PA LF+V
Sbjct: 112 RDPA-----------------------------------KLFLVD--------------- 121
Query: 564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS 623
KE + + P + + + R I D + I+ +
Sbjct: 122 --RSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRA 178
Query: 624 ETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTE 683
E S + + V + + + S
Sbjct: 179 Y-HRLCLHCSVDQEGKSVLS-EKFILKVRPAFKAV--------------PVVSVSKASYL 222
Query: 684 VDVEKPVE-TAPVIDPPPPPEVL-VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
+ + T + D ++ K++ ++ + + T+ + S RV
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARV 282
Query: 742 K-------------GKAE---------------FIKKLDDLEVKERENAVLEVEVTSD-- 771
G A F + V + EN L VE +
Sbjct: 283 NDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPK 342
Query: 772 KADVKWFKNNSLI 784
+W N
Sbjct: 343 PEHQQWIYMNRTF 355
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 184 bits (468), Expect = 3e-51
Identities = 52/447 (11%), Positives = 108/447 (24%), Gaps = 66/447 (14%)
Query: 76 IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
+ Y +V+++ E +P+ + V + S L V
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGC--------ALRPQSSGTVYEAAAVEVDVSASITLQV 70
Query: 136 QVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVE 193
V + W + + + ++ +++ + G Y + + ++
Sbjct: 71 LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT 130
Query: 194 SAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESA 253
+++ E +
Sbjct: 131 ILFTVSI--------------------------------RNTLLYTLRRPYFRKMENQ-D 157
Query: 254 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 313
L P P VEW + + S + N+ G
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARNELGR 216
Query: 314 VESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKK 371
+ L L +K E + + + W + + ++
Sbjct: 217 ECTRLFTIDL--NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Query: 372 VTIEKKGTIR------KLLIRNISVHDEGEYTCSLP-DQETSAELNVVELPPEISVPLQD 424
+ T R + +++ +D G YTCS SA + +VE I+
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVE-KGFINATNSS 333
Query: 425 VKVSRDEKASFEIELTKGDAL----VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE 480
D+ F + A W K + + + F
Sbjct: 334 EDYEIDQYEEFCFS-VRFKAYPQIRCTWTFSRKSFPCEQKGLDN----GYSISKFCNHKH 388
Query: 481 DAGEYSCRVG-DTGDKESKATLTVEAP 506
GEY D TL + +
Sbjct: 389 QPGEYIFHAENDDAQFTKMFTLNIRSG 415
Score = 176 bits (448), Expect = 1e-48
Identities = 47/425 (11%), Positives = 103/425 (24%), Gaps = 67/425 (15%)
Query: 8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
L + V + ++ +TL+V + A LW + L ++
Sbjct: 44 LRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR--- 100
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
V + I + + + G Y + ++ + V + E
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR----NTLLYTLRRPYFRKME 154
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
+ L P P VEW + + S + N
Sbjct: 155 NQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-HELFGTDIRCCARN 212
Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
+ G + + L + +
Sbjct: 213 ELGRECTRLFTIDLN---------------------------------QTPQTTLPQLFL 239
Query: 248 TEGESAVLS-VQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTH------TLTLIQCST 297
GE + V + W + K +++ ++++ + +
Sbjct: 240 KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV-DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 355
D G Y+ + +A + + ++G +D E+ + E V + +
Sbjct: 300 NDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI 356
Query: 356 DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
W + +K + H GEY LN+
Sbjct: 357 RCTWTFSRKSFPCEQKGLDNG----YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 412 VELPP 416
Sbjct: 413 RSGTK 417
Score = 176 bits (448), Expect = 1e-48
Identities = 47/452 (10%), Positives = 122/452 (26%), Gaps = 86/452 (19%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHT 289
+P+ + V + S L V V + W + + + +
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS 104
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
+ +++ + G Y + + ++ +++ + + + E ++A++ +
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSI-RNTLLYTLRRPYFRKMENQDALVCIS 163
Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--SLPDQETSA 407
+ + V+W + ++ K E+ + K + + + C
Sbjct: 164 ESVPEPIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCARNELGRECT 219
Query: 408 ELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSI 465
L ++L L + + E + + + W + K + +S
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279
Query: 466 DG------KKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
+ + S D G Y+C + A +T+ +
Sbjct: 280 YSTNRTMIRILFAFVSSVARNDTGYYTCSS--SKHPSQSALVTIVEK--------GFINA 329
Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
E+ + +
Sbjct: 330 TN------------------------------------------SSEDYEIDQYEEFCFS 347
Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
+ KA P W + K ++ + +G +I + + G+Y A N+
Sbjct: 348 VRFKAYPQIRCTWTFSRKSFPCE--QKGLDNGYSISK---FCNHKHQPGEYIFHAENDDA 402
Query: 640 SATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
T + + ++H HH
Sbjct: 403 QFTKMFTLNIRS-----GT-------KHHHHH 422
Score = 123 bits (310), Expect = 3e-30
Identities = 57/457 (12%), Positives = 123/457 (26%), Gaps = 117/457 (25%)
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-K 354
S Y + + E L + + + +EV + L+V V +
Sbjct: 23 SVGKSSSYPMVSESPEDL---GCALRPQ--SSGTVYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNV--- 411
W + ++ +G + ++I ++ GEY + + T+ +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
+ ++ + ++ A I + + +V+W + + + ++ K++K
Sbjct: 137 IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
++ G + C + G + ++ T LP + L
Sbjct: 197 VLHELFG----TDIRCCARNELGRECTRLFTIDLNQT--PQTTLPQLFL----------- 239
Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
V E IR A V + +
Sbjct: 240 --------------------------------------KVGEPLWIRCKA-VHVNHGFGL 260
Query: 591 VWFRNNKPLLSSPKKR------EIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
W NK L + + + D G Y ++ +
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV-ARNDTGYYTCSSSKHPSQS--- 316
Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
A VT+ V + IN+ +
Sbjct: 317 ALVTI----VEKGFINA------------------------------------TNSSEDY 336
Query: 705 LVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
+ + E+ VRFKA P + WT + ++
Sbjct: 337 EIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG 373
Score = 118 bits (296), Expect = 1e-28
Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 9/203 (4%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEV 59
+ T ++ + + + + V V L W + L+E +
Sbjct: 216 RECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF 275
Query: 60 VFSDQSDMHSYVSIVT--IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL 117
S S + + I+ + S+ + + G YT + ++ V + +
Sbjct: 276 EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-----ALVTIVEKGFINAT 330
Query: 118 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKD 177
D I + E SV+ P + W K Q + N ++++
Sbjct: 331 NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD-NGYSISKFCNHKHQ 389
Query: 178 KGRYSVKVTNKEGTVESAANLNV 200
G Y N + LN+
Sbjct: 390 PGEYIFHAENDDAQFTKMFTLNI 412
Score = 95.5 bits (237), Expect = 5e-21
Identities = 42/380 (11%), Positives = 87/380 (22%), Gaps = 110/380 (28%)
Query: 368 TSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKV 427
T + K + + SV Y + + + V+V
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPM-VSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 428 SRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYS 486
+ ++ + G+ W + + L G ++I AGEY
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYL 119
Query: 487 CRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLF 545
+ + + T+++
Sbjct: 120 LFIQSEATNYTILFTVSIRNT--------------------------------------- 140
Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 605
L+ R E L+ ++ P P + W + S ++
Sbjct: 141 -------------LLYTLRRPYFRKME-NQDALVCISESVPEPIVEWVLCDSQGESCKEE 186
Query: 606 R--EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSID 663
+ E ++ E D + A NELG
Sbjct: 187 SPAVVKKEEKVL-------HELFGTDIRCCARNELGRECTRLFT---------------- 223
Query: 664 IDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR-FKALP 722
+D+ + +T P++ +K GE L I +
Sbjct: 224 --------------------IDLNQTPQT-------TLPQLFLKVGEPLWIRCKAVHVNH 256
Query: 723 PPKAEWTVNGTVIVPSKRVK 742
W + + +
Sbjct: 257 GFGLTWELENKALEEGNYFE 276
Score = 39.3 bits (91), Expect = 0.004
Identities = 5/62 (8%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIK 749
+++ + V V + ++V A W + + + +
Sbjct: 46 PQSSGTVYEAAA--VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103
Query: 750 KL 751
+
Sbjct: 104 SM 105
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 181 bits (461), Expect = 1e-50
Identities = 62/424 (14%), Positives = 126/424 (29%), Gaps = 59/424 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P + V EN+ LE + + W +G+ + + +
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE---- 61
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
+ + +EG Y A+ G A ++ K + H+ + EG
Sbjct: 62 -GSLVFLRPQASDEGHYQCFAETPAGVA---SSRVISFRKTYLIASPAKTHEKTPIEGRP 117
Query: 131 AVLSVQV-GGEPSPKVEWYKDGKLIKDRQ----------ITSEKNTHTLTLIQCSTKDKG 179
L + P P + W K + N + + + D
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 180 RYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSIL 239
+Y N E + N+G +P
Sbjct: 178 KYVCTAKNAAVDEEVVLV---------------------EYEIKGVTKDNSGYKGEPVPQ 216
Query: 240 EPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEKNTHTLTLIQ 294
D+ G+ ++ G P ++K+GK + + + L
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 295 CSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKL-DDLEVKERENAVLEVEVTS 352
+D+G Y+ +V N G + L V ++ +K + VK+ ++ + +VT
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTV-VSAPKYEQKPEKVIVVKQGQDVTIPCKVTG 335
Query: 353 D-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSA 407
+V W + + + + + L+I+ + D+G Y C D+
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTD-----SGLVIKGVKNGDKGYYGCRATNEHGDKYFET 390
Query: 408 ELNV 411
+ V
Sbjct: 391 LVQV 394
Score = 179 bits (456), Expect = 6e-50
Identities = 77/452 (17%), Positives = 143/452 (31%), Gaps = 94/452 (20%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK--DRQITSEKNTHT 289
+ P + + +V E VL + G K W KDGK + K+ +
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
L ++ D+G Y G S + K + E L+
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK-TYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 349 EVTS--DKADVKWFKDGQEIKTS-------KKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
+ + K + W K + +++T G + ++ V D +Y C+
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 400 -----LPDQETSAELNV---------VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL 445
+ ++ E + + P +D+ + + +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPM 241
Query: 446 --VKWYKDGKEIAFSENVTLSI--DGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESK-A 499
++K+GK++ + ++ ++L+ + ED G Y+C V G +
Sbjct: 242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL 301
Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
LTV + P
Sbjct: 302 KLTVVSA----------------------------------------------------P 309
Query: 560 LFIERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
+ ++ E+ V ++G + + KV PAP++VW N KPL S + + D +I +
Sbjct: 310 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSGLVIKGV 367
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVD 650
K D G Y ATNE G V V+
Sbjct: 368 KNGDK----GYYGCRATNEHGDKYFETLVQVN 395
Score = 174 bits (443), Expect = 3e-48
Identities = 73/430 (16%), Positives = 133/430 (30%), Gaps = 76/430 (17%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK--DRQITSEKNTHT 167
+ P + + +V E VL + G K W KDGK + K+ +
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
L ++ D+G Y G S +
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK-------------------------- 97
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQ----- 280
+ H+ + EG L + P P + W K
Sbjct: 98 ------TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF 151
Query: 281 -----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE------- 328
+ N + + + D +Y N E +G +
Sbjct: 152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
Query: 329 ---FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS--KKVTIEKKGTIRK 382
D+ K + ++ S+ +FK+G+++ + ++T + + ++
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271
Query: 383 LLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDV-KVSRDEKASFE 436
LL + DEG YTC + Q+ S +L VV P+ + V V + + +
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIP 330
Query: 437 IELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTG 493
+ G V W + K ++ T++ G L+I D G Y CR + G
Sbjct: 331 CK-VTGLPAPNVVWSHNAKPLS-GGRATVTDSG----LVIKGVKNGDKGYYGCRATNEHG 384
Query: 494 DKESKATLTV 503
DK + + V
Sbjct: 385 DKYFETLVQV 394
Score = 159 bits (403), Expect = 1e-42
Identities = 55/341 (16%), Positives = 102/341 (29%), Gaps = 52/341 (15%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEV 59
S + + KT E L+ L P+P + W +V
Sbjct: 89 SSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADV 148
Query: 60 VFSDQSDMHSYVS----IVTIKSIKKREEGVYTVVAKNREGEA-------KMDIPVKVNT 108
D + + + + Y AKN + ++ K N+
Sbjct: 149 TDFD-RRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS 207
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ-----ITSEK 163
G +P D+ G+ ++ G P ++K+GK + +
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT 267
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSE 222
+ L +D+G Y+ +V N G + L V P
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV-------------VSAPKYEQ- 313
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
+P + + +G+ + +V G P+P V W + K + + T
Sbjct: 314 -----------------KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT 356
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ L + DKG Y + TN+ G + V+
Sbjct: 357 VTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 136 bits (343), Expect = 9e-35
Identities = 64/444 (14%), Positives = 115/444 (25%), Gaps = 110/444 (24%)
Query: 320 LNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSK--KVTIE 375
L VD+ + ++ +E VLE + + W KDG+ + +
Sbjct: 1 LPVDKY-PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 376 KKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL----PPEISVPLQDVKVSRDE 431
+G+ L+ DEG Y C A V+ +
Sbjct: 60 DEGS---LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR 116
Query: 432 KASFEIELTKGD--ALVKWYKDGKEI-------AFSENVTLSIDGKKQKLIIFSAGLEDA 482
+ L L+ W K F +T DG I+ + D
Sbjct: 117 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 176
Query: 483 GEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVK 540
+Y C ++ ++ +
Sbjct: 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG------------------------- 211
Query: 541 WLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL 600
P+ ++ K + ++P +F+N K +
Sbjct: 212 -----------------EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVN 254
Query: 601 SSPKKREIF--DGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRP 657
+P+ R L K E D G Y N +G H ++T
Sbjct: 255 GNPEDRITRHNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLT--------- 304
Query: 658 PINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR 717
V +AP + P ++VK+G+D+ I +
Sbjct: 305 --------------------------------VVSAPKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 718 FKALPPPKAEWTVNGTVIVPSKRV 741
LP P W+ N + +
Sbjct: 333 VTGLPAPNVVWSHNAKPLSGGRAT 356
Score = 97.3 bits (242), Expect = 1e-21
Identities = 53/436 (12%), Positives = 94/436 (21%), Gaps = 151/436 (34%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGKEIAFSEN--VTLSIDG 467
V+ P + +V + E IE W KDGK + E+ +G
Sbjct: 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 468 KKQKLIIFSAGLEDAGEYSCRV-GDTGDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGD 525
L+ D G Y C G S+ +
Sbjct: 63 ---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL------------------- 100
Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
+ EKT E +L + +
Sbjct: 101 ---------------------------------IASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 586 -PAPSIVWFRNNKPLLSSPKKREI-------FDGENIILELKEADSETDAGDYKVVATNE 637
P P I W + + + DG + + D D Y A N
Sbjct: 128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS-DIYKYVCTAKNA 186
Query: 638 LGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVI 696
+ + PV
Sbjct: 187 AVDEEVVLVEYEIKG-------------------------------VTKDNSGYKGEPVP 215
Query: 697 DPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR---------------- 740
+++ K G+ I + + P + NG + +
Sbjct: 216 -QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLF 274
Query: 741 ------------------------------VKGKAEFIKKL-DDLEVKERENAVLEVEVT 769
V ++ +K + VK+ ++ + +VT
Sbjct: 275 KTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT 334
Query: 770 SD-KADVKWFKNNSLI 784
+V W N +
Sbjct: 335 GLPAPNVVWSHNAKPL 350
Score = 28.7 bits (64), Expect = 8.6
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 741 VKGKAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKNNSLIK 785
V + ++ +E VLE + + W K+
Sbjct: 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYN 49
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 172 bits (437), Expect = 1e-49
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 37/219 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTH 166
+ P+ +PL V + EG +A + G P P+V W++DG++I QI+
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
LT+ + + GRYS+K TN G S A L V
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLV-------------------------- 97
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
+ P+ ++ L +++ +G L V+V G P+P V++Y+DG I+ D QI+
Sbjct: 98 ---KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
E + ++L + + +D G YSV TN G S A L V
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 161 bits (409), Expect = 8e-46
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-----DRQITSEKNTH 288
+ P+ +PL V + EG +A + G P P+V W++DG++I QI+
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA--EFIKKLDDLEVKERENAVL 346
LT+ + + GRYS+K TN G S A L V A F+++L + V++ L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLP 401
+V VT VK+++DG EI++S I ++G + LLI D G Y+ S+
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVG 183
Query: 402 DQETSAELNV 411
++AEL V
Sbjct: 184 RATSTAELLV 193
Score = 153 bits (388), Expect = 6e-43
Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 6/192 (3%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PTF++ + V E S T E + P P++ W+ +G+ + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+TI ++ K G Y++ A N G+A + V + P+ ++ L +++ +G
Sbjct: 65 --LTIPAVTKANSGRYSLKATNGSGQATSTAELLV-KAETAPPNFVQRLQSMTVRQGSQV 121
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
L V+V G P+P V++Y+DG I+ D QI+ E + ++L + + +D G YSV TN
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 189 EGTVESAANLNV 200
G S A L V
Sbjct: 182 VGRATSTAELLV 193
Score = 134 bits (338), Expect = 4e-36
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSK--KVTIEKKGTIRKLL 384
F + L + V E A E ++ +V WF+DGQ I TS V I KL
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEIE 438
I ++ + G Y+ ++AEL V PP LQ + V + + ++
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126
Query: 439 LTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDK 495
+T G +VK+Y+DG EI S + +S +G L+I A ED+G YS G
Sbjct: 127 VT-GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA 185
Query: 496 ESKATLTVE 504
S A L V+
Sbjct: 186 TSTAELLVQ 194
Score = 132 bits (333), Expect = 2e-35
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 56/244 (22%)
Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE--NVTLSID 466
+ P + PLQ V V A+FE ++ G V W++DG+ I+ S V +S
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFS 59
Query: 467 GKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
+ KL I + ++G YS + +G S A L V+A
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA----------------- 102
Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
P F++R + TV++ +RL +V
Sbjct: 103 --------------------------------PPNFVQRLQSMTVRQGSQVRLQVRVTGI 130
Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
P P + ++R+ + SS + +G+ L + EA E D+G Y V ATN +G AT A
Sbjct: 131 PTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSGTYSVNATNSVGRATSTA 189
Query: 646 RVTV 649
+ V
Sbjct: 190 ELLV 193
Score = 96.7 bits (241), Expect = 3e-23
Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 42/188 (22%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 614
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDN 674
L + ++ ++G Y + ATN G AT A + V
Sbjct: 64 KLTIPAV-TKANSGRYSLKATNGSGQATSTAELLV------------------------- 97
Query: 675 IDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
K P + V++G ++++VR +P P ++ +G
Sbjct: 98 -------------KAETAPPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAE 143
Query: 735 IVPSKRVK 742
I S +
Sbjct: 144 IQSSLDFQ 151
Score = 74.8 bits (184), Expect = 1e-15
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
E PP F ++ + + + S+V L+VR+ +P P + +Y +G +Q + + S + D++
Sbjct: 100 ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
S + I + G Y+V A N G A
Sbjct: 160 S----LLIAEAYPEDSGTYSVNATNSVGRA 185
Score = 47.8 bits (114), Expect = 2e-06
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 50/145 (34%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK------- 742
AP P V+V +G E P P+ W +G VI S
Sbjct: 2 TTQAPTFTQPLQS-VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 743 --------------------------GKAE---------------FIKKLDDLEVKEREN 761
G+A F+++L + V++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 762 AVLEVEVTSD-KADVKWFKNNSLIK 785
L+V VT VK++++ + I+
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQ 145
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 173 bits (441), Expect = 5e-49
Identities = 68/289 (23%), Positives = 112/289 (38%), Gaps = 20/289 (6%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHT 289
+ L V ++ GES + GEP + G+ I + E
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEV 348
LT+ + +D G Y + T+ +G + A L + K F + + E K+ E+A +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-YQKLTFREVVSPQEFKQGEDAEVVC 120
Query: 349 EVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC-----SLPD 402
V+S V W +E+ T L I NI+ DEG Y C + +
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGE 179
Query: 403 QETSAELNVVELPPEISVP--LQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFS 458
+ + +V +PP IS+P + R E+ +F G + W+++GK I +
Sbjct: 180 IDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR-ASGSPEPAISWFRNGKLIEEN 238
Query: 459 ENVTLSIDGKKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAP 506
E L +L + + D G Y CR G+ E +A L V
Sbjct: 239 EKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 172 bits (437), Expect = 2e-48
Identities = 59/317 (18%), Positives = 113/317 (35%), Gaps = 44/317 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ V + PE + GE + T VV
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK----EGVR 59
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGES 130
S +TI + + G+Y A + +G+ + + +++ +K + E + +GE
Sbjct: 60 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGED 115
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
A + +V P+P V W + + D + N + L ++ + D+G Y +
Sbjct: 116 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 174
Query: 188 K-EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
+ G ++ + + PP+ S+ + + +
Sbjct: 175 EARGEIDFRDIIVIV--------NVPPA---------------------ISMPQKSFNAT 205
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSV 305
GE S + G P P + W+++GKLI+ + + + + LT+ D G Y
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC 265
Query: 306 KVTNKEGTVESAANLNV 322
+ TNK G E A L V
Sbjct: 266 RATNKAGEDEKQAFLQV 282
Score = 171 bits (436), Expect = 3e-48
Identities = 57/323 (17%), Positives = 110/323 (34%), Gaps = 51/323 (15%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHT 167
+ L V ++ GES + GEP + G+ I + E
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
LT+ + +D G Y + T+ +G + A L +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI-------------------------- 95
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITS 283
+K + E + +GE A + +V P+P V W + + D +
Sbjct: 96 ------YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 149
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNK-EGTVESAANLNVDQGKAEFI--KKLDDLEVKE 340
N + L ++ + D+G Y + + G ++ + + +K + +
Sbjct: 150 LAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
E + + + WF++G+ I+ ++K ++ T +L +RNI D G Y C
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCR 266
Query: 399 ---SLPDQETSAELNVVELPPEI 418
+ E A L V
Sbjct: 267 ATNKAGEDEKQAFLQVFV-QHHH 288
Score = 149 bits (378), Expect = 2e-40
Identities = 58/332 (17%), Positives = 110/332 (33%), Gaps = 61/332 (18%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIR 386
+ L +E+ E+ + + W+ G++I ++++V ++K+G +L I
Sbjct: 6 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 65
Query: 387 NISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
N ++ D G Y C QE + L + + + + + E A ++
Sbjct: 66 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCRVS- 123
Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKA 499
V W +E+ + ++ L I + D G Y C +A
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEG------RVEA 176
Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
++ V ++ P A
Sbjct: 177 RGEIDF--------------------RDIIVIVNVP---------------------PAI 195
Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
++ T + + + SP P+I WFRN K + + + I G N L ++
Sbjct: 196 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVR 253
Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ D G Y ATN+ G A + V V
Sbjct: 254 NIINS-DGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 114 bits (287), Expect = 2e-28
Identities = 56/334 (16%), Positives = 104/334 (31%), Gaps = 101/334 (30%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYK-DGKEIAFSENVTLSIDGKKQKLI 473
++++ L V++S E F + WY G++I ++ V + +G + +L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 474 IFSAGLEDAGEYSCRVGDTG--DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
I++A +EDAG Y C+ D +E+ L +
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK------------------------- 98
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
F E + K+ ++ +V +SPAP++
Sbjct: 99 ---------------------------LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS 131
Query: 592 WFRNNKPLLSSPKKREIFDGEN--IILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
W +N+ + + R N IL + ++D G Y+ E G
Sbjct: 132 WLYHNEEVTTISDNRFAMLANNNLQILNIN----KSDEGIYRCEGRVE----ARGEIDFR 183
Query: 650 DVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVI-DPPPPPEVLVKK 708
D+ + V P I P ++
Sbjct: 184 DIIVI-----------------------------------VNVPPAISMPQKSFNATAER 208
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
GE++ R P P W NG +I +++
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 242
Score = 70.2 bits (172), Expect = 3e-13
Identities = 30/275 (10%), Positives = 62/275 (22%), Gaps = 91/275 (33%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
+ + + P + + ++S+ + +G L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 618 LKEADSETDAGDYKVVATNELGSATHG-ARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
+ A+ E DAG Y+ AT+ G +
Sbjct: 64 IYNANIE-DAGIYRCQATDAKGQTQEATVVLE---------------------------- 94
Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
+ P K+GED ++ R + P P W + +
Sbjct: 95 -------------IYQKLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140
Query: 737 PSKRVK-------------------------------GKAE---------------FIKK 750
+ G+ + +K
Sbjct: 141 TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 751 LDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
+ + E + + + WF+N LI
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI 235
Score = 42.5 bits (100), Expect = 3e-04
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 45/132 (34%)
Query: 699 PPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------ 740
+V + GE P + G I+ ++R
Sbjct: 9 ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 68
Query: 741 --------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 773
+ K F + + E K+ E+A + V+S
Sbjct: 69 IEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 128
Query: 774 DVKWFKNNSLIK 785
V W +N +
Sbjct: 129 AVSWLYHNEEVT 140
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 162 bits (413), Expect = 3e-46
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 36/218 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTL 168
E P I + + DV+ GE+A LS Q+ G P P ++WY+ GK + +++S+ THTL
Sbjct: 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
T++ +D+G Y+ TN+ G VE+++ L + + TP P Y + E
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLL--------QATPQFHPGYPLKE------ 111
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEK 285
G + L V G P P + W+ KL+++ I + +
Sbjct: 112 ---------------KYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 286 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
+ L + K G+Y V+++N GTV++ ++ +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
Score = 145 bits (369), Expect = 2e-40
Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 9/197 (4%)
Query: 8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
+ G P K+ K V + L ++V P PD+ WY G+ L ++ + S
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
H+ +T+ + ++ +EGVYT +A N GE + + + P+
Sbjct: 63 HT----LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL-QATPQFHPGYPLKEKYYGAV 117
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTK-DKGRYSV 183
G + L V G P P + W+ KL+++ I + ++ L + K G+Y V
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 184 KVTNKEGTVESAANLNV 200
+++N GTV++ ++ +
Sbjct: 178 QLSNVFGTVDAILDVEI 194
Score = 136 bits (345), Expect = 4e-37
Identities = 52/242 (21%), Positives = 81/242 (33%), Gaps = 54/242 (22%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
P I ++DV E A ++ G L +KWY+ GKE+ S +S DG+ L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 473 IIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
+ + ED G Y+C + G+ E+ + L ++A
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------------------------- 100
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
P E+ T+RL P P++
Sbjct: 101 ---PQF---------------------HPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMT 136
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
WF K L +S L +K +T AG YKV +N G+ V +
Sbjct: 137 WFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI-Q 195
Query: 652 EK 653
+K
Sbjct: 196 DK 197
Score = 125 bits (316), Expect = 4e-33
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 12/188 (6%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
K++ D+ K E A L ++ D+KW++ G+E+ S+K + G L +
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVM 68
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP--LQDVKVSRDEKASFEIELT 440
DEG YTC + + ETS++L + P + + +
Sbjct: 69 TEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYI 128
Query: 441 KGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE-DAGEYSCRVG-DTGDKE 496
G + W+ K + SEN+T+ L++ + + AG+Y ++ G +
Sbjct: 129 -GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD 187
Query: 497 SKATLTVE 504
+ + ++
Sbjct: 188 AILDVEIQ 195
Score = 110 bits (278), Expect = 6e-28
Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 40/187 (21%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
G+AP + ++ T K +L ++ P P I W+R K L+ S K + DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
L + + E D G Y +ATNE+G +++ + P +
Sbjct: 65 LTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQAT----PQFHP-------------- 105
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
P + G L++ V + P P W ++
Sbjct: 106 ---------------------GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL 144
Query: 736 VPSKRVK 742
S+ +
Sbjct: 145 QNSENIT 151
Score = 42.0 bits (99), Expect = 2e-04
Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 47/133 (35%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------- 740
+V K GE ++ + P P +W G ++ S++
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 741 ------------------------VKGKAEFIKKL---DDLEVKERENAVLEVEVTSD-K 772
++ +F + L V
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV 132
Query: 773 ADVKWFKNNSLIK 785
+ WF L++
Sbjct: 133 PAMTWFHGQKLLQ 145
Score = 37.4 bits (87), Expect = 0.008
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
K++ D+ K E A L ++ D+KW++ +
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI 49
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 158 bits (402), Expect = 7e-45
Identities = 55/218 (25%), Positives = 84/218 (38%), Gaps = 36/218 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
+ + D Y V+ TN+ G+V A+L V E P
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEV---------EVPA--------------- 100
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEK 285
K P LE + V GE + + G+P P + W K LI + Q+ +
Sbjct: 101 ---KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 286 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
+ +L + D G Y V N+ G + L+V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 151 bits (383), Expect = 3e-42
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 15/193 (7%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA----EFIKKLDDLEVKERENAVL 346
+ + D Y V+ TN+ G+V A+L V+ + ++ + + E +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL-IRNISVHDEGEYTC----SL 400
++ + + W K I + + + L+ + D G Y
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 401 PDQETSAELNVVE 413
+ + EL+V +
Sbjct: 185 GIDQKTVELDVAD 197
Score = 147 bits (373), Expect = 7e-41
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 11/198 (5%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDM 67
+ P F ++ + + S TL ++ P+P + WY G+ + + +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT-GKPEKPSILEPLHDVSIT 126
H + I S+ + VY V A N+ G ++V K P LE + V
Sbjct: 62 HQ----LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTLIQCSTK-DKGRYS 182
GE + + G+P P + W K LI + Q+ ++ +L + D G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 183 VKVTNKEGTVESAANLNV 200
V N+ G + L+V
Sbjct: 178 VCAKNRFGIDQKTVELDV 195
Score = 131 bits (332), Expect = 3e-35
Identities = 47/242 (19%), Positives = 68/242 (28%), Gaps = 53/242 (21%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDGK 468
+ P L+++ V A+ ++T G +VKWY+ GKEI G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 469 KQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
+LII S +DA Y R G A+L VE PA
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA-------------------- 100
Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 587
P +E + + P
Sbjct: 101 ---------------------------KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD 133
Query: 588 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647
P I W + + ++ + I L DAG Y V A N G +
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 648 TV 649
V
Sbjct: 194 DV 195
Score = 120 bits (303), Expect = 2e-31
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 14/191 (7%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS--KKVTIEKKGTIRKLL 384
F ++L +L V+ + NA L +VT K VKW++ G+EI K E KG +L+
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELP----PEISVPLQDVKVSRDEKASFE 436
I +++ D Y +A L V P+ + V R E S +
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 437 IELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQK-LIIFSAGLEDAGEYSCRVG-DTG 493
I + K D ++ W K I + + + + + +DAG Y G
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 494 DKESKATLTVE 504
+ L V
Sbjct: 186 IDQKTVELDVA 196
Score = 104 bits (261), Expect = 9e-26
Identities = 42/189 (22%), Positives = 65/189 (34%), Gaps = 40/189 (21%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 613
AP F E V+ + L+ KV P P + W+R K +++ K I F G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
L + + DA Y+V ATN+ GS + A + V+V P
Sbjct: 62 HQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLP--------------- 105
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
K +E V +GE + I++ F P P W
Sbjct: 106 --------------KTLE--------GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 734 VIVPSKRVK 742
+I + +
Sbjct: 144 LIDNNGHYQ 152
Score = 75.9 bits (187), Expect = 7e-16
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+ P + V+A V++++ P+P + W + +
Sbjct: 101 KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT 160
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
S+V +++++ G Y V AKNR G + + + V
Sbjct: 161 ---SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 40.9 bits (96), Expect = 6e-04
Identities = 13/146 (8%), Positives = 31/146 (21%), Gaps = 52/146 (35%)
Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG------------------ 732
AP + V+ + + + P P +W G
Sbjct: 2 AMAPHFKEELRN-LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 733 --------------------------------TVIVPSKRVKGKAEFIKKLDDLEVKERE 760
++ V + ++ + + E
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 761 NAVLEVEVTSD-KADVKWFKNNSLIK 785
+++ + + W K LI
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLID 146
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 162 bits (411), Expect = 2e-44
Identities = 59/336 (17%), Positives = 107/336 (31%), Gaps = 43/336 (12%)
Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
+ G++ LS GG P W KDG + + L ++
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL-VGPQRLQVLN 67
Query: 173 CSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGK 232
S +D G YS + + + + D + ++ V
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDT---------- 117
Query: 233 PEKPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSE 284
P P +++ + G P+P + W K+G+ + I
Sbjct: 118 -GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE----FIKKLDDLEVKE 340
+L + D+G Y+ V NK G++ L+V + +
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKT------SKKVTIEKKGTIR-------KLLIR 386
+ +V SD + ++W K + + + VT+ K L +
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEI 418
N++ D GEYTC S+ SA L V+ E+
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL 332
Score = 147 bits (373), Expect = 2e-39
Identities = 51/364 (14%), Positives = 103/364 (28%), Gaps = 78/364 (21%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
+P + + + V L P +W +G L ++ V+ Q
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQR---- 62
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKM-----------------DIPVKVNTGKPE 112
+ + + + G Y+ + + + +
Sbjct: 63 ----LQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 113 KPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----DRQITSEKN 164
P P +++ + G P+P + W K+G+ + I
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
+L + D+G Y+ V NK G++ L+V E P P
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV--------LERSPHRP-------- 222
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI--- 281
+ + G +V + P ++W K ++ +
Sbjct: 223 -----------ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG 271
Query: 282 -------------TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE 328
T++K L+L + +D G Y+ N G +A L V E
Sbjct: 272 TPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV-LPAEE 330
Query: 329 FIKK 332
+ +
Sbjct: 331 ELVE 334
Score = 129 bits (326), Expect = 4e-33
Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 53/327 (16%)
Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
+ G++ LS GG P W KDG + + L ++
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL-VGPQRLQVLN 67
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVD--------------------QGKAEFIK--- 331
S +D G YS + + + + D G + +
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127
Query: 332 -KLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVT-IEKKGTIRKLLIRNI 388
L V + + W K+G+E + ++ I+ + L++ ++
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 389 SVHDEGEYTC----SLPDQETSAELNVVEL----PPEISVPLQDVKVSRDEKASFEIELT 440
D G YTC + L+V+E P + + F +
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK-V 246
Query: 441 KGDAL--VKWYK----DGKEIAFSENVTLSI---------DGKKQKLIIFSAGLEDAGEY 485
DA ++W K +G ++ +++ D + + L + + EDAGEY
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 486 SCRVG-DTGDKESKATLTVEAPAVEFL 511
+C G G A L V E +
Sbjct: 307 TCLAGNSIGFSHHSAWLVVLPAEEELV 333
Score = 129 bits (325), Expect = 6e-33
Identities = 59/368 (16%), Positives = 103/368 (27%), Gaps = 100/368 (27%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ + L + L W KDG + S++V + + +L +
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ----RLQVL 66
Query: 387 NISVHDEGEYTC------------------------SLPDQETSAELNVVELPPEISVP- 421
N S D G Y+C ++ + + V P + P
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126
Query: 422 ---LQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVT-LSIDGKKQKLIIF 475
+ + V F G+ + W K+G+E + + + ++ L++
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 185
Query: 476 SAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
S D G Y+C V G TL V +
Sbjct: 186 SVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--------------------------- 218
Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
P + L +T + KV + P I W +
Sbjct: 219 --------------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 258
Query: 595 ----NNKPLLSSPKKR---------EIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
N + D E +L L + DAG+Y +A N +G +
Sbjct: 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGFS 317
Query: 642 THGARVTV 649
H A + V
Sbjct: 318 HHSAWLVV 325
Score = 108 bits (272), Expect = 5e-26
Identities = 56/335 (16%), Positives = 90/335 (26%), Gaps = 75/335 (22%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ 470
E+P + + + G W KDG + SE V + Q
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQ 61
Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
+L + +A ED+G YSCR T ++ VT P GD
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR--------------VTDAPSSGDDEDGE 107
Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
+ + + P + V T+R +P PSI
Sbjct: 108 DEAEDTGVDTGAPYWTRPE------------RMDKKLLAVPAANTVRFRCPAAGNPTPSI 155
Query: 591 VWFRNNKPL-LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
W +N + + L ++ D G+Y V N+ GS + V
Sbjct: 156 SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQTYTLDV 214
Query: 650 DVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKG 709
RP + P G
Sbjct: 215 LERSPHRPI-------------------------------------LQAGLPANQTAVLG 237
Query: 710 EDLKIEVRFKALPPPKAEWT----VNGTVIVPSKR 740
D++ + + P +W VNG+ + P
Sbjct: 238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272
Score = 77.0 bits (189), Expect = 3e-15
Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 24/194 (12%)
Query: 552 LGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF 609
+G + P +E+ V G + L P VW ++ L P +R +
Sbjct: 1 MGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLV 58
Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
+ L++ A E D+G Y H + D G
Sbjct: 59 GPQR--LQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD------------ 103
Query: 670 HHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWT 729
++ + + T VD P T P V ++ P P W
Sbjct: 104 ---EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA--ANTVRFRCPAAGNPTPSISWL 158
Query: 730 VNGTVIVPSKRVKG 743
NG R+ G
Sbjct: 159 KNGREFRGEHRIGG 172
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 158 bits (401), Expect = 1e-42
Identities = 77/452 (17%), Positives = 135/452 (29%), Gaps = 102/452 (22%)
Query: 234 EKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTH 288
+ P L EP + + + A + + G P P++ W + DG + D + S
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 289 TLTLIQCS----TKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ Y+ N+ G++ S + ++ V +A
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 345 VLEVEVTSDKAD----VKWFKDGQEIK-----TSKKVTIEKKGTIRKLLIRNISVHD-EG 394
V++ + S AD V W D +E K + G L IR + D
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---LHIREVGPEDGYK 178
Query: 395 EYTC-------SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-----KG 442
Y C + V+ P S P V + + ++ +G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 443 D--ALVKWYKDGKEIAFSENVTLS--IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKES 497
+WYK + + V L+ + LII A +ED+G+Y C V G +
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ 557
+ LTV AP
Sbjct: 299 ETVLTVTAP--------------------------------------------------- 307
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
+TV + +P ++ W ++ K + S + I
Sbjct: 308 -LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIES 359
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
+K+ D G Y+ N+ SA A + +
Sbjct: 360 VKKEDK----GMYQCFVRNDRESAEASAELKL 387
Score = 155 bits (394), Expect = 1e-41
Identities = 71/421 (16%), Positives = 135/421 (32%), Gaps = 57/421 (13%)
Query: 12 PPTFSKK-TKPVYAEENSEVTLEVRLVAVPEPDLLWY-YNGEPLQETDEVVFSDQSDMHS 69
P F K+ T + ++ +E + P P+++W +G + + +
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
+ ++ VY +A+N+ G V V ++ + G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISR-DVHVRAVVA--QYYEADVNKEHVIRGN 119
Query: 130 SAVLSVQVG---GEPSPKVEWYKDGKLIKDRQITSEKN-----THTLTLIQCSTKD-KGR 180
SAV+ + + V W+ D + + + L + + +D
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKS 179
Query: 181 YSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILE 240
Y + ++ ET S + + +++ P P++++
Sbjct: 180 YQCRTKHRLT------------------GETRLSATKGRLVITE--PISSSAPRTPALVQ 219
Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS-----EKNTHTLTLIQC 295
+ + + L G P+P WYK + +Q ++ + TL +
Sbjct: 220 K--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-K 354
+D G+Y V N G L V V AV + T +
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELN 410
V W KDG+ I S+ L I ++ D+G Y C E SAEL
Sbjct: 337 KTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Query: 411 V 411
+
Sbjct: 387 L 387
Score = 153 bits (387), Expect = 1e-40
Identities = 72/429 (16%), Positives = 130/429 (30%), Gaps = 80/429 (18%)
Query: 112 EKPSIL-EPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD---RQITSEKNTH 166
+ P L EP + + + A + + G P P++ W + DG + D + S
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 167 TLTLIQCS----TKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+ Y+ N+ G++ S
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV------------------------- 96
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG---GEPSPKVEWYKDGKLIKDR 279
++ ++ + G SAV+ + + V W+ D +
Sbjct: 97 --HVRA----VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP 150
Query: 280 QITSEKN-----THTLTLIQCSTKD-KGRYSVKVTNKEG----TVESAANLNVDQGKAEF 329
+ + L + + +D Y + ++ + L + + +
Sbjct: 151 GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSS 210
Query: 330 IKKL-----DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTI--R 381
+ LE+ L +W+K + + V + +
Sbjct: 211 APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG 270
Query: 382 KLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
L+I++ V D G+Y C S+ + L V P + V A F
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPPTQTVDFGRPAVFTC 329
Query: 438 ELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGD 494
+ G+ V W KDGK I SE+V L I S ED G Y C V D
Sbjct: 330 Q-YTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRES 378
Query: 495 KESKATLTV 503
E+ A L +
Sbjct: 379 AEASAELKL 387
Score = 135 bits (342), Expect = 1e-34
Identities = 56/342 (16%), Positives = 104/342 (30%), Gaps = 68/342 (19%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLE---VRLVAVPEPDLLWYYNGEPLQETDE 58
S + + + + + ++ VA + W+ + E
Sbjct: 93 SRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN----- 147
Query: 59 VVFSDQSDMHSYVSIVT----IKSIKKR-EEGVYTVVAKNREG--------EAKMDIPVK 105
F Y+ + + I+ + Y K+R + ++ I
Sbjct: 148 -YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP 206
Query: 106 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITS---- 161
+++ P P++++ + + + L G P+P WYK + +Q
Sbjct: 207 ISSSAPRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDR 264
Query: 162 -EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVV 220
++ + TL + +D G+Y V N G L V
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT------------------- 305
Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ 280
S ++ G AV + Q G P V W KDGK I
Sbjct: 306 -------------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---- 348
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ L + +DKG Y V N + E++A L +
Sbjct: 349 ---GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 106 bits (267), Expect = 5e-25
Identities = 69/444 (15%), Positives = 117/444 (26%), Gaps = 126/444 (28%)
Query: 329 FIKK-LDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLL 384
F+K+ + ++ A +E + + + ++ W + I G L+
Sbjct: 6 FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK---LV 62
Query: 385 IRNISVHD------EGEYTCSLPDQETSAELNVVEL----PPEISVPLQDVKVSRDEKAS 434
D Y C +Q S V + + V R A
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 435 FE--IELTKGDAL--VKWYKDGKEIAF-----SENVTLSIDGKKQKLIIFSAGLEDA-GE 484
+ I D + V W+ D +E F + G+ L I G ED
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE---LHIREVGPEDGYKS 179
Query: 485 YSCRV-----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQV 539
Y CR G+T +K L + P + P++
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV--------------------- 218
Query: 540 KWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 599
+ + TI L+ + PAPS W++ +
Sbjct: 219 -------------------------QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253
Query: 600 LSSPKKR--EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
+ + L +K+A E D+G Y V N +G + +T
Sbjct: 254 TRKQAVVLNDRVKQVSGTLIIKDAVVE-DSGKYLCVVNNSVGGESVETVLT--------- 303
Query: 658 PINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR 717
V PP + V G +
Sbjct: 304 --------------------------------VTAPLSAKIDPPTQT-VDFGRPAVFTCQ 330
Query: 718 FKALPPPKAEWTVNGTVIVPSKRV 741
+ P W +G I S+ V
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHSESV 354
Score = 64.6 bits (157), Expect = 4e-11
Identities = 37/272 (13%), Positives = 64/272 (23%), Gaps = 64/272 (23%)
Query: 557 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNK-PLLSSPKKREIF-DGEN 613
+ P+F++ + + K +P P I+W R++ + P R+I DG+
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 614 IILELKEADS--ETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVH 670
+ + D E A Y +A N+ GS + V V
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV------------------- 102
Query: 671 HLDNIDSPRQSTEVDVEKPVE---TAPVIDPPPPPEVLVKKGE----------------- 710
++ V P V E
Sbjct: 103 -AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 711 ---DLKI--------------EVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDD 753
+L I + + + T VI
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Query: 754 LEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
LE+ L +W+K
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253
Score = 62.6 bits (152), Expect = 2e-10
Identities = 30/278 (10%), Positives = 60/278 (21%), Gaps = 83/278 (29%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKPLL--SSPKKREIFDGE 612
A + ++ V + + + + + W + + + +
Sbjct: 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
+ L ++E E Y+ + L T
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETR----------------------------- 193
Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWT--- 729
S + V E +AP + + + + + P P W
Sbjct: 194 ---LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFI 250
Query: 730 -----------------VNGTVIVPSKR-------------------------VKGKAEF 747
V+GT+I+ V
Sbjct: 251 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310
Query: 748 IKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
V AV + T + V W K+ I
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 348
Score = 35.3 bits (81), Expect = 0.080
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
+ PV P + +IE + P P+ W + V
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD 48
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 147 bits (372), Expect = 1e-40
Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 38/230 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 167
P D + G A Q G+P PK+ W K GK + + + +
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 168 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTL 226
L + T D+ Y +N G + + L V + P
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV-----LREDQIPRGF----------- 108
Query: 227 QVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR------Q 280
P+I + +A + G P P++ W+KD + +
Sbjct: 109 ---------PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEF 329
++ L + Q D+G+Y TN GT SA ANL V +G
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV-RGTKHH 208
Score = 135 bits (342), Expect = 2e-36
Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 20/206 (9%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 289
P D + G A Q G+P PK+ W K GK + + + +
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 290 LTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV------DQGKAEFIKKLDDLEVKERE 342
L + T D+ Y +N G + + L V +G V+
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR 124
Query: 343 NAVLEVEVTSD-KADVKWFKDGQEIKTSKK---VTIEKKGTIRKLLIRNISVHDEGEYTC 398
A + + + ++ WFKD + TS + + +I L I D+G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 399 SL-----PDQETSAELNVVELPPEIS 419
A L V
Sbjct: 185 VATNSAGTRYSAPANLYVRGTKHHHH 210
Score = 133 bits (335), Expect = 2e-35
Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 14/209 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP F++ + + P P ++W G+ + V S +
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT---GKPEKPSILEPLHDVSITEG 128
I +++ R+E +Y VA N GE + + V P+I +
Sbjct: 66 RIQPLRT--PRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDR------QITSEKNTHTLTLIQCSTKDKGRYS 182
+A + G P P++ W+KD + + ++ L + Q D+G+Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 183 VKVTNKEGTVESA-ANLNVDPYEPKESKE 210
TN GT SA ANL V K
Sbjct: 184 CVATNSAGTRYSAPANLYV--RGTKHHHH 210
Score = 113 bits (285), Expect = 7e-29
Identities = 42/199 (21%), Positives = 68/199 (34%), Gaps = 21/199 (10%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK-VTIEKKGTIRKLLI 385
F + D A + T D + + W K G+++ + V G+ L I
Sbjct: 8 RFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67
Query: 386 RNISV-HDEGEYTC----SLPDQETSAELNVVELP------PEISVPLQDVKVSRDEKAS 434
+ + DE Y C ++ + S L V+ P I + Q V R A+
Sbjct: 68 QPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTAT 127
Query: 435 FEIELTKGD--ALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
+ G+ + W+KD + S N + L I + D G+Y C
Sbjct: 128 MLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186
Query: 490 G-DTGDKES-KATLTVEAP 506
G + S A L V
Sbjct: 187 TNSAGTRYSAPANLYVRGT 205
Score = 113 bits (285), Expect = 8e-29
Identities = 50/247 (20%), Positives = 77/247 (31%), Gaps = 56/247 (22%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN-VTLSIDGK 468
E PP + D ASF + T GD + W K GK+++ V DG
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 469 KQKLIIFSAGL-EDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
L I D Y C + G+ LTV
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQI----------------- 104
Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
P P + K V+ T ++ +P
Sbjct: 105 ----------------------------PRGFPTIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 587 APSIVWFRNNKPLLSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGSA-T 642
P I WF++ P+ +S I L++++++ D G Y+ VATN G+ +
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES-DQGKYECVATNSAGTRYS 195
Query: 643 HGARVTV 649
A + V
Sbjct: 196 APANLYV 202
Score = 95.3 bits (237), Expect = 2e-22
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 36/184 (19%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 616
P F ++T G + + P P IVW + K + + + F DG +L
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVL 65
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
++ + D Y+ VA+N +G + R+TV E
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRE------------------------ 101
Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
++ P ID P +V V++ + P P+ W + +
Sbjct: 102 ----------DQIPRGFPTIDMGPQLKV-VERTRTATMLCAASGNPDPEITWFKDFLPVD 150
Query: 737 PSKR 740
S
Sbjct: 151 TSNN 154
Score = 43.3 bits (102), Expect = 9e-05
Identities = 18/149 (12%), Positives = 30/149 (20%), Gaps = 54/149 (36%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG----------------- 732
ET P P G + P PK W G
Sbjct: 3 GETPPRFTRTPVD-QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 733 -----------------------------------TVIVPSKRVKGKAEFIKKLDDLEVK 757
TV+ + +G V+
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 758 ERENAVLEVEVTSD-KADVKWFKNNSLIK 785
A + + + ++ WFK+ +
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVD 150
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 146 bits (371), Expect = 2e-40
Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 19/205 (9%)
Query: 126 TEGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DR-QITSEKNTHTLTLIQCSTKDKGRY 181
+ E L V KV W +G I+ DR + L + + + DKG+Y
Sbjct: 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 74
Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
+++ + + + +L+ Y+ ++ K +
Sbjct: 75 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE-----------KNRARVLGGL 123
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCST 297
V+I EG++ L+ V G+P P+V W K+ K + T T+ ST
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVST 183
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
D G+Y + V NK G+ S ++V
Sbjct: 184 ADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 123 bits (310), Expect = 4e-32
Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 34/233 (14%)
Query: 421 PLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLE 480
L+ + + + D V W +G I +S+ V + G++ L I
Sbjct: 10 DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 69
Query: 481 DAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQV 539
D G+Y + D + L+ +A +
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR------------------------ 105
Query: 540 KWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 599
+ + +A + + T++E + L V P P + W +N K L
Sbjct: 106 -------LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL 158
Query: 600 LSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ F+ G + + D+G Y +V N+ GS T V+V +
Sbjct: 159 AQTDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 121 bits (305), Expect = 1e-31
Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 27/188 (14%)
Query: 39 VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
V + + W +NG ++ +D V + + I ++G Y + + +
Sbjct: 30 VEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKGKYVMELFDGKTGH 85
Query: 99 KMDIPVKVN-----------------TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP 141
+ + + K + V+I EG++ L+ V G+P
Sbjct: 86 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP 145
Query: 142 SPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
P+V W K+ K + T T+ ST D G+Y + V NK G+ S
Sbjct: 146 PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 205
Query: 198 LNVDPYEP 205
++V + P
Sbjct: 206 VSV--FIP 211
Score = 115 bits (289), Expect = 2e-29
Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 32/200 (16%)
Query: 248 TEGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DR-QITSEKNTHTLTLIQCSTKDKGRY 303
+ E L V KV W +G I+ DR + L + + + DKG+Y
Sbjct: 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 74
Query: 304 SVKVTNKEGTVESAANLNVDQGKAE--------------------FIKKLDDLEVKEREN 343
+++ + + + +L+ D + ++E +
Sbjct: 75 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA 134
Query: 344 AVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI-EKKGTIRKLLIRNISVHDEGEYTC--- 398
L V D +V W K+ + + + + + G I +S D G+Y
Sbjct: 135 LNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194
Query: 399 -SLPDQETSAELNVVELPPE 417
+ + ++V PE
Sbjct: 195 NKYGSETSDFTVSVFI--PE 212
Score = 107 bits (268), Expect = 1e-26
Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 31/195 (15%)
Query: 342 ENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
E L VT + V W +G I+ S +V G L I + +D+G+Y
Sbjct: 18 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77
Query: 400 LPDQ----ETSAELNV--------------------VELPPEISVPLQDVKVSRDEKASF 435
L D + + +L+ + V + + +
Sbjct: 78 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNL 137
Query: 436 EIELTKGD--ALVKWYKDGKEIAFSENVTLSID-GKKQKLIIFSAGLEDAGEYSCRVG-D 491
+ GD V W K+ K +A +++ L + G+ I D+G+Y V
Sbjct: 138 TCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Query: 492 TGDKESKATLTVEAP 506
G + S T++V P
Sbjct: 197 YGSETSDFTVSVFIP 211
Score = 87.6 bits (217), Expect = 8e-20
Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 23/173 (13%)
Query: 575 TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 633
I+L + V + W N + S + + GE I L++ E + D G Y +
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVME 77
Query: 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETA 693
+ ++ D + Q + A
Sbjct: 78 LFDGKTGHQKTVDLSGQAY--------------------DEAYAEFQRLKQAAIAEKNRA 117
Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
V+ P V +++G+ L + PPP+ W N + + K E
Sbjct: 118 RVLGGLPDV-VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169
Score = 70.3 bits (172), Expect = 7e-14
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+ V +E + L + P P++ W N + L +TD ++
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+Y TI + + G Y +V KN+ G D V V
Sbjct: 174 AY---FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 146 bits (369), Expect = 4e-39
Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 24/291 (8%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKDRQ-----ITSEKNTH 288
+ I+ GES QV G+ + W+ +G+ + Q + ++ ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
TLT+ + D G Y VT ++GT A N+ + K F E KE E+AV+
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-FQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 348 VEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPD 402
+V S + W G+++ K V L IR I DEG Y C
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 403 QETSAELNV-VELPPEISVP--LQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAF 457
+ ++ V V +PP + + + + + + + G + W KDG+ I
Sbjct: 181 EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCD-ADGFPEPTMSWTKDGEPIEN 239
Query: 458 SENVTLS--IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
E +L I + D EY C G++++ L V A
Sbjct: 240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 145 bits (367), Expect = 7e-39
Identities = 57/321 (17%), Positives = 102/321 (31%), Gaps = 46/321 (14%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWY-YNGEPLQETDEVVFSDQSDMHSY 70
++ + D+ W+ NGE L + + +D S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGE 129
+TI + + G+Y V +G + VK+ +K EGE
Sbjct: 63 T--LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI----FQKLMFKNAPTPQEFKEGE 116
Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
AV+ V P + W G+ + KD + N + L + D+G Y +
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGR 175
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
+ ++ + VN P + + + +
Sbjct: 176 ILARGEINFKDI--------------------------QVIVNV--PPTVQARQSIVNAT 207
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTLTLIQCSTKDKG 301
G+S L G P P + W KDG+ I D + ++ LT+ D+
Sbjct: 208 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 267
Query: 302 RYSVKVTNKEGTVESAANLNV 322
Y NK G +++ +L V
Sbjct: 268 EYVCIAENKAGEQDASIHLKV 288
Score = 140 bits (354), Expect = 3e-37
Identities = 59/319 (18%), Positives = 110/319 (34%), Gaps = 54/319 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKDRQ-----ITSEKNTH 166
+ I+ GES QV G+ + W+ +G+ + Q + ++ ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDT 225
TLT+ + D G Y VT ++GT A N+ +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI------------------------- 97
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQIT 282
+K EGE AV+ V P + W G+ + KD +
Sbjct: 98 -------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIK---KLDDLEVK 339
N + L + D+G Y + + ++ V ++ + +
Sbjct: 151 VLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 340 ERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE--KKGTIRKLLIRNISVHDEGEY 396
++ L + + + W KDG+ I+ ++ + +L IRN+ +DE EY
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269
Query: 397 TC----SLPDQETSAELNV 411
C +Q+ S L V
Sbjct: 270 VCIAENKAGEQDASIHLKV 288
Score = 128 bits (323), Expect = 4e-33
Identities = 50/339 (14%), Positives = 105/339 (30%), Gaps = 71/339 (20%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFK-DGQEIKTSKK--VTIEKKGTIRK 382
+ E+ E+ +V D D+ WF +G+++ +++ +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 383 LLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
L I N ++ D G Y C + E + + + + + E A
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVC 122
Query: 438 ELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTG 493
++ + W G+++ ++V + L I D G Y C R+ G
Sbjct: 123 DVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 494 DKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPL 552
+ K + V P P+V
Sbjct: 181 EINFKDIQVIVNVP--------PTVQARQ------------------------------- 201
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFD 610
T ++ L+ P P++ W ++ +P+ + + ++ IF
Sbjct: 202 -----------SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
++ L ++ D D +Y +A N+ G + V
Sbjct: 251 DDSSELTIRNVDKN-DEAEYVCIAENKAGEQDASIHLKV 288
Score = 119 bits (301), Expect = 4e-30
Identities = 40/194 (20%), Positives = 74/194 (38%), Gaps = 10/194 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
F P +E + + +V+ P ++W + G + +V F S+
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN----- 154
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ + I+ IKK +EG Y + ++V P + + + + G+S
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSV 214
Query: 132 VLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
L G P P + W KDG+ I D + ++ LT+ D+ Y
Sbjct: 215 TLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274
Query: 187 NKEGTVESAANLNV 200
NK G +++ +L V
Sbjct: 275 NKAGEQDASIHLKV 288
Score = 99.6 bits (248), Expect = 3e-23
Identities = 50/349 (14%), Positives = 92/349 (26%), Gaps = 99/349 (28%)
Query: 416 PEISVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGKEIAFSENVTLSI---DGKKQ 470
++ + ++S E F + D + W+ E +S+ D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 471 KLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
L I++A ++DAG Y C V D E+ + +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK---------------------- 100
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
+F + KE ++ V +S P
Sbjct: 101 ------------------------------LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
+I+W + ++ R I N L+++ +TD G Y+ + +
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 649 VDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKK 708
V V PP V
Sbjct: 189 VIVNV---PP-----------------------------------TVQARQSIVNATANL 210
Query: 709 GEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVK 757
G+ + + P P WT +G I + K F +L ++
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIR 259
Score = 31.4 bits (71), Expect = 1.1
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 741 VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
+ K F E KE E+AV+ +V S + W +
Sbjct: 97 IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV 141
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 139 bits (351), Expect = 1e-37
Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 31/233 (13%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 170
P I ++ G+ L + G P + +W+K K I NT L
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------PNGNTSELIF 69
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
KD G Y +V N S + L+V + E V+
Sbjct: 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV-----------------CDIPESFQRSVD 112
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
K I + G + VL G P P +W+K+ + + +
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKL 166
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERE 342
+ + +G Y V N + +S + + + D+ E +
Sbjct: 167 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE-IIIDELNNLGHPDNKEQTTDQ 218
Score = 131 bits (331), Expect = 5e-35
Identities = 34/209 (16%), Positives = 65/209 (31%), Gaps = 35/209 (16%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTL 292
P I ++ G+ L + G P + +W+K K I NT L
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------PNGNTSELIF 69
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESA-ANLNV--------------DQGKAEFIKKLDDLE 337
KD G Y +V N S + L+V + K + + +
Sbjct: 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK 129
Query: 338 VKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY 396
+ VL+ +WFK+ + K + ++ + + +G Y
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTY 180
Query: 397 TC----SLPDQETSAELNVVELPPEISVP 421
C Q++ +++ + P
Sbjct: 181 WCHVYNDRDSQDSKKVEIIIDELNNLGHP 209
Score = 112 bits (282), Expect = 2e-28
Identities = 27/233 (11%), Positives = 55/233 (23%), Gaps = 36/233 (15%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF 61
+ L + + V L R P W+ + + +
Sbjct: 8 HHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--- 64
Query: 62 SDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK------------MDIPVKVNTG 109
S + ++ ++ G Y N V+
Sbjct: 65 ----------SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 169
K I + G + VL G P P +W+K+ + + +
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYM 168
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+ + +G Y V N + +S + P +
Sbjct: 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN-----NLGHPDNKEQTT 216
Score = 98.8 bits (246), Expect = 1e-23
Identities = 47/255 (18%), Positives = 75/255 (29%), Gaps = 62/255 (24%)
Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGK 468
+V +I+V + V + T G +W+K KEI +G
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP---------NGN 63
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
+LI + ++DAG Y CRV + + S+ + L V F + V+
Sbjct: 64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK----- 118
Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
+ + T+ L SP
Sbjct: 119 --------------------------------LQICVEPTSQKLMPGSTLVLQCVAVGSP 146
Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGA 645
P WF+N PL KK + + D E G Y N+ S +
Sbjct: 147 IPHYQWFKNELPLTHETKK---------LYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKV 196
Query: 646 RVTVDVEKVGRPPIN 660
+ +D P N
Sbjct: 197 EIIIDELNNLGHPDN 211
Score = 92.3 bits (229), Expect = 3e-21
Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 45/221 (20%)
Query: 312 GTVESAANLNVD--QGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT 368
G+ + + ++ + V + L T +WFK +EI
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61
Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTC-------------------SLPDQETSAEL 409
G +L+ + V D G Y C +P+ +
Sbjct: 62 ---------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
Query: 410 NVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDG 467
V E +I V K+ + G +W+K+ +
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHETK------- 164
Query: 468 KKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKA-TLTVEAP 506
+ ++ LE G Y C V D ++SK + ++
Sbjct: 165 --KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203
Score = 77.2 bits (190), Expect = 3e-16
Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 38/185 (20%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
+ E K V ++L + P WF+ NK + + L
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---------L 67
Query: 617 ELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
DAG Y N + +++ V
Sbjct: 68 IFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQLDVCD------------------------ 102
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
+S + V+ E+ I P + G L ++ P P +W N +
Sbjct: 103 --IPESFQRSVDGVSESKLQICVEPTS-QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159
Query: 736 VPSKR 740
+
Sbjct: 160 THETK 164
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 141 bits (356), Expect = 3e-37
Identities = 54/218 (24%), Positives = 82/218 (37%), Gaps = 36/218 (16%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 168
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
+ + D Y V+ TN+ G+V A+L V E P
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEV---------EVPAKIHL----------- 104
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEK 285
P LE + V GE + + G+P P + W K LI Q+ +
Sbjct: 105 -------PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 286 NTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
+ +L + D G Y V N+ G + L+V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 134 bits (339), Expect = 5e-35
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 15/195 (7%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI-----KDRQITSEKNTHTL 290
P E L ++++ +A L +V G P P V+WY+ GK I K R + H L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ----GKAEFIKKLDDLEVKERENAVL 346
+ + D Y V+ TN+ G+V A+L V+ + ++ + + E +
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 347 EVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL-IRNISVHDEGEYTCSLP--- 401
++ + + W K I + + + L+ + D G Y
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 402 -DQETSAELNVVELP 415
+ + EL+V ++P
Sbjct: 185 GIDQKTVELDVADVP 199
Score = 134 bits (338), Expect = 7e-35
Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 22/215 (10%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDM 67
+ P F ++ + + S TL ++ P+P + WY G+ + + +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREG--EAKMDIPVKVNTGKPEKPSILEPLHDVSI 125
H I S+ + VY V A N+ G + V+V K P LE + V
Sbjct: 62 HQL----IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA-KIHLPKTLEGMGAVHA 116
Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTK-DKGRY 181
GE + + G+P P + W K LI Q+ ++ +L + D G Y
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
V N+ G + L+V P PP
Sbjct: 177 VVCAKNRFGIDQKTVELDV---------ADVPDPP 202
Score = 113 bits (284), Expect = 9e-28
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTS--KKVTIEKKGTIRKLL 384
F ++L +L V+ + NA L +VT K VKW++ G+EI K E KG +L+
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP-----LQDVKVSRDEKASF 435
I +++ D Y +A L V P +I +P + V R E S
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEV-PAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 436 EIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQK-LIIFSAGLEDAGEYSCRVG-D 491
+I + G + W K I + + + + + +DAG Y
Sbjct: 125 KIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 492 TGDKESKATLTVEAP 506
G + L V
Sbjct: 184 FGIDQKTVELDVADV 198
Score = 111 bits (280), Expect = 3e-27
Identities = 47/241 (19%), Positives = 69/241 (28%), Gaps = 53/241 (21%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDGKK 469
+ P L+++ V A+ ++T G +VKWY+ GKEI G
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 470 QKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
+LII S +DA Y R G A+L VE P
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP---------------------- 99
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
I + P +E + + P P
Sbjct: 100 ------AKIHL-------------------PKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 589 SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
I W + + ++ + I L DAG Y V A N G +
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Query: 649 V 649
V
Sbjct: 195 V 195
Score = 99.8 bits (249), Expect = 4e-23
Identities = 41/193 (21%), Positives = 64/193 (33%), Gaps = 48/193 (24%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGEN 613
AP F E V+ + L+ KV P P + W+R K +++ K I F G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
L + ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 62 HQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEV---------------------- 98
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPP----PPEVLVKKGEDLKIEVRFKALPPPKAEWT 729
I P V +GE + I++ F P P W
Sbjct: 99 -------------------PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ 139
Query: 730 VNGTVIVPSKRVK 742
+I + +
Sbjct: 140 KGQDLIDNNGHYQ 152
Score = 36.7 bits (85), Expect = 0.023
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKNNSLIK 785
F ++L +L V+ + NA L +VT K VKW++ I
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
Score = 36.3 bits (84), Expect = 0.032
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 725 KAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSL 783
T + V VP+K + ++ + + E +++ + + W K L
Sbjct: 87 SVSGTASLEVEVPAKIHL--PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL 144
Query: 784 IK 785
I
Sbjct: 145 ID 146
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 136 bits (343), Expect = 1e-36
Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 22/218 (10%)
Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKD-----RQITSEKNTHT 167
+ V I E +Q + KV + + K I + I
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
+ + + +D+G Y+ ++ + + T S L D ++ + +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWI--------- 113
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSEK 285
+ + P +E L +T + +L +V + WYKD + I D + +
Sbjct: 114 ----RKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
TL + + S KD G Y V + + G +S L +
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 120 bits (302), Expect = 3e-31
Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 22/210 (10%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
GI P F+K V E +V ++ + + + +N + + E + D +
Sbjct: 1 GIDP-FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM--HIDRN 57
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEA---------------KMDIPVKVNTGKPEK 113
+ + + ++ ++ +EG YT ++ + K + + +
Sbjct: 58 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 117
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSEKNTHTLTLI 171
P +E L +T + +L +V + WYKD + I D + + TL +
Sbjct: 118 PHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 176
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
+ S KD G Y V + + G +S L +
Sbjct: 177 EFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 116 bits (291), Expect = 1e-29
Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 32/210 (15%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVT--SDKADVKWFKDGQEIKTSK--KVTIEKKGTI 380
G F K +E+ E+ ++ S A V + + +EI K+ I++ I
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 381 RKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL----------------------PPEI 418
++ + + DEG YT L D + + VV + P
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 419 SVPLQDVKVSRDEKASFE--IELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
L +V+ + + + K + + WYKD +EI+ E L+I
Sbjct: 121 VEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITE 177
Query: 477 AGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
+DAG Y + D G +S+ L EA
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 103 bits (258), Expect = 3e-25
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 41/237 (17%)
Query: 419 SVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ--KLII 474
+ V++ + F ++ K A V + + KEI + ID ++ +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
ED G Y+ ++ D ++ TV + + E
Sbjct: 66 EKLQDEDEGTYTFQLQD---GKATNHSTVV-------------LVGDVFKKLQKEAEFQR 109
Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWF 593
+ K Q P F+E V + + L KV + IVW+
Sbjct: 110 QEWIRK----------------QGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWY 152
Query: 594 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
++ + + K F L + E + DAG Y+V+ ++ G ++ +
Sbjct: 153 KDEREISVDEKHD--FKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 86.9 bits (215), Expect = 1e-19
Identities = 26/185 (14%), Positives = 53/185 (28%), Gaps = 27/185 (14%)
Query: 561 FIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK 619
F + + EKG +R + K S + + N K + PK + D I+E+
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 620 EAD-SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSP 678
+ D G Y + + + DV K
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK----------------------KLQ 102
Query: 679 RQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP-KAEWTVNGTVIVP 737
+++ E + P E V ++ ++ + + W + I
Sbjct: 103 KEAEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLKCKVANIKKETHIVWYKDEREISV 160
Query: 738 SKRVK 742
++
Sbjct: 161 DEKHD 165
Score = 37.6 bits (87), Expect = 0.007
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 743 GKAEFIKKLDDLEVKERENAVLEVEVT--SDKADVKWFKNNSLIK 785
G F K +E+ E+ ++ S A V + N I
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF 45
Score = 33.8 bits (77), Expect = 0.13
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 713 KIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDK 772
+ + K F++ L EV N +L+ +V + K
Sbjct: 86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW-EVTGECNVLLKCKVANIK 144
Query: 773 --ADVKWFKNNSLIK 785
+ W+K+ I
Sbjct: 145 KETHIVWYKDEREIS 159
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 138 bits (350), Expect = 1e-36
Identities = 47/289 (16%), Positives = 92/289 (31%), Gaps = 25/289 (8%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
P I + ++ + G + L G VEW + S+ ++ L+
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP--PSPHWTLYSDGSSSILSTNN 57
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD- 353
+ ++ G Y +A +L V + ++ V E ++A+L +T
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPV 117
Query: 354 -KADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----LPDQETS 406
+A V + G+ + + I +Y CS S
Sbjct: 118 LEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSIS 174
Query: 407 AELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTKGDA--LVKWYKDGKEIAFSENV 461
L V + PP +++ ++ R E A + D V + ++A +
Sbjct: 175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS 234
Query: 462 TLSIDGKKQK--LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPA 507
+ ++ L + + AG YSC G + V A
Sbjct: 235 DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 120 bits (303), Expect = 2e-30
Identities = 46/321 (14%), Positives = 82/321 (25%), Gaps = 51/321 (15%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
G P + + + VTL E W P
Sbjct: 2 GSIPVIEPSVPELVVKPGATVTLRCVGNGSVE----WDGPPSP---------HWTLYSDG 48
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
SI++ + + G Y I + V P +P + +V + E +
Sbjct: 49 SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD--PARPWNVLA-QEVVVFEDQ 105
Query: 130 SAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
A+L + V + G+ + S H T+ + Y
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALM 165
Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
V S + L+V P P++ ++
Sbjct: 166 GGRKVMSIS---------------------------IRLKVQKVIPGPPALTLVPAELVR 198
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIK------DRQITSEKNTHTLTLIQCSTKDKG 301
GE+A + + + D + TL L Q + G
Sbjct: 199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAG 258
Query: 302 RYSVKVTNKEGTVESAANLNV 322
YS +N +G ++ V
Sbjct: 259 NYSCVASNVQGKHSTSMFFRV 279
Score = 111 bits (279), Expect = 3e-27
Identities = 57/355 (16%), Positives = 95/355 (26%), Gaps = 82/355 (23%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
+ +L VK L V+W S T+ G+ L N
Sbjct: 7 IEPSVPELVVKPGATVTLRCVGN---GSVEWDGPP-----SPHWTLYSDGSSSILSTNNA 58
Query: 389 SVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD- 443
+ + G Y C + L V + +V Q+V V D+ A LT
Sbjct: 59 TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 444 -ALVKWYK-DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTGDKESKA 499
A V + G+ + N + S I A + +Y C +G
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISI 175
Query: 500 TLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAP 559
L V P
Sbjct: 176 RLKV------------------------------------------------QKVIPGPP 187
Query: 560 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIIL 616
E +++ + V+ ++N L+ P++ + + + L
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTL 247
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
L + D + AG+Y VA+N G + V V +H HH
Sbjct: 248 NLDQVDFQ-HAGNYSCVASNVQGKHSTSMFFRV----VESAGN------SHHHHH 291
Score = 72.3 bits (177), Expect = 6e-14
Identities = 49/346 (14%), Positives = 84/346 (24%), Gaps = 100/346 (28%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P I + ++ V + G+ V+W S + TL DG L
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCV---GNGSVEWDGPP-----SPHWTLYSDGSSSILST 55
Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
+A ++ G Y C GD + L V+ PA + V + DA
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFED-QDALLP---- 110
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 593
C L P +
Sbjct: 111 ----------------CLLTDP-----------------------------VLEAGVSLV 125
Query: 594 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
R L + A + DY+ A G + + V+K
Sbjct: 126 RVRGRPLMRHTNYSFSPWHG--FTIHRAKFI-QSQDYQCSALMG-GRKVMSISIRLKVQK 181
Query: 654 VGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK 713
V P P + P E++ +GE +
Sbjct: 182 VIPGP-----------------------------------PALTLVPA-ELVRIRGEAAQ 205
Query: 714 IEVRFKALPPPK-AEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKE 758
I ++ N T + ++ +K+ L + +
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQ 251
Score = 50.7 bits (121), Expect = 7e-07
Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 58/254 (22%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
P+ E VK T+ L S + W SP DG + IL
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----SPHWTLYSDGSSSILST 55
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSP 678
A + + G Y+ + + + V P
Sbjct: 56 NNATFQ-NTGTYRCTEPGDPLGGSAAIHLYVKD-----PARPWN--------------VL 95
Query: 679 RQSTEVDVEKPVE-TAPVIDPPPPPEVLVKK--GEDLKIEVRFKALP------------- 722
Q V ++ + DP V + + G L + P
Sbjct: 96 AQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQ 155
Query: 723 ----------PPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD- 771
+ +++ + V K + G +L E A + +S
Sbjct: 156 SQDYQCSALMGGRKVMSISIRLKV-QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD 214
Query: 772 -KADVKWFKNNSLI 784
DV NN+ +
Sbjct: 215 VNFDVFLQHNNTKL 228
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 137 bits (345), Expect = 5e-36
Identities = 59/297 (19%), Positives = 90/297 (30%), Gaps = 26/297 (8%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 290
P P I ++ + GE+ L G VEW + E TL
Sbjct: 1 ADP-APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPIS--PYWTLDPESPGSTL 53
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
T + K+ G Y + +L V + ++ V E + AVL +
Sbjct: 54 TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI 113
Query: 351 TSD--KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----LPD 402
T K V ++G +IR V D Y C
Sbjct: 114 TDPALKDSVSLMREGGRQVLRKTVYFFSPWRG---FIIRKAKVLDSNTYVCKTMVNGRES 170
Query: 403 QETSAELNVVEL---PPEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYKDGK---EI 455
T L V + PP+I + + R E A T + K G EI
Sbjct: 171 TSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI 230
Query: 456 AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFL 511
+ + + K + L + + +DAG YSC D G + + V
Sbjct: 231 PLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287
Score = 125 bits (315), Expect = 4e-32
Identities = 56/319 (17%), Positives = 83/319 (26%), Gaps = 51/319 (15%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + E VTL E W P D S
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDP---------ESPG 50
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
S +T ++ + G Y I + V P L +V++ EG+ A
Sbjct: 51 STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD--PAHSWNLLA-QEVTVVEGQEA 107
Query: 132 VLSVQV-GGEPSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
VL + V ++G + + + + + + D Y K
Sbjct: 108 VLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNG 167
Query: 190 GTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITE 249
S L+VN PE P I +
Sbjct: 168 RESTSTG---------------------------IWLKVNRVHPEPPQIKLEPSKLVRIR 200
Query: 250 GESAVLSVQVGGEPSPKVEWYKDGKLI------KDRQITSEKNTHTLTLIQCSTKDKGRY 303
GE+A + K G D Q K L+L +D G Y
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Query: 304 SVKVTNKEGTVESAANLNV 322
S +N GT + N V
Sbjct: 261 SCVASNDVGTRTATMNFQV 279
Score = 124 bits (313), Expect = 9e-32
Identities = 52/322 (16%), Positives = 89/322 (27%), Gaps = 52/322 (16%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
P P I ++ + GE+ L G VEW + E TL
Sbjct: 1 ADP-APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPIS--PYWTLDPESPGSTL 53
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
T + K+ G Y + +L V + P
Sbjct: 54 TTRNATFKNTGTYRCTELEDPMAGSTTIHLYV---------KDPAHS------------- 91
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDG-KLIKDRQITSEKN 286
+V++ EG+ AVL + V ++G + + + +
Sbjct: 92 ---------WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP 142
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAE---FIKKLDDLEVKERE 342
+ + D Y K S L V++ E + L E
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGE 202
Query: 343 NAVLEVEVT-SDKADVKWFKDGQ---EIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
A + T ++ K G EI + +R L + + D G Y+C
Sbjct: 203 AAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSC 262
Query: 399 ----SLPDQETSAELNVVELPP 416
+ + + VVE
Sbjct: 263 VASNDVGTRTATMNFQVVESHH 284
Score = 116 bits (291), Expect = 6e-29
Identities = 52/349 (14%), Positives = 89/349 (25%), Gaps = 82/349 (23%)
Query: 334 DDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
+L V+ E L V+W T++ + L RN + +
Sbjct: 12 PELVVEPGETVTLRCVSNGS---VEWDGPISPY-----WTLDPESPGSTLTTRNATFKNT 63
Query: 394 GEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDA--LVK 447
G Y C T+ L V + ++ Q+V V ++A +T V
Sbjct: 64 GTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123
Query: 448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC--RVGDTGDKESKATLTVEA 505
++G + II A + D+ Y C V + L V
Sbjct: 124 LMREGGRQ-VLRKTVYFFSPWR-GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
+ P
Sbjct: 182 ------------------------------------------------VHPEPPQIKLEP 193
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI---FDGENIILELKEAD 622
+ +++ + V + L P + + + L L D
Sbjct: 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
+ DAG Y VA+N++G+ T V H HH
Sbjct: 254 FQ-DAGIYSCVASNDVGTRTATMNFQVVE----SHHH--------HHHH 289
Score = 72.3 bits (177), Expect = 6e-14
Identities = 40/327 (12%), Positives = 70/327 (21%), Gaps = 99/327 (30%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P I ++ V E + + V+W S TL + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV---SNGSVEWDGPI-----SPYWTLDPESPGSTLTT 55
Query: 475 FSAGLEDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
+A ++ G Y C + + L V+ PA + VT+V +A
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEG-QEAVLP---- 110
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 593
C + P + S+
Sbjct: 111 ----------------CLITDP-----------------------------ALKDSVSLM 125
Query: 594 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
R + I+ D+ Y G + + + V +
Sbjct: 126 REGGRQVLRKTVYFFSPWRGFII---RKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNR 181
Query: 654 VGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK 713
V P P I P ++ +GE +
Sbjct: 182 VHPEP-----------------------------------PQIKLEPSK-LVRIRGEAAQ 205
Query: 714 IEVRFKALPPPKAEWTVNGTVIVPSKR 740
I G +
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPL 232
Score = 51.1 bits (122), Expect = 6e-07
Identities = 22/185 (11%), Positives = 40/185 (21%), Gaps = 52/185 (28%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP+ E V+ T+ L S + W P + + L
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDP-----ESPGSTLT 54
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
+ A + + G Y+ + + + + V
Sbjct: 55 TRNATFK-NTGTYRCTELEDPMAGSTTIHLYVKD-------------------------- 87
Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPP-PKAEWTVNGTVIV 736
EV V +G++ + G V
Sbjct: 88 ---------------PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132
Query: 737 PSKRV 741
K V
Sbjct: 133 LRKTV 137
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 131 bits (330), Expect = 3e-35
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 6/190 (3%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
TF + P ++ + + R+ + P P + W Y+ E + + F+ ++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN----- 56
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+ + I +I K +EG+Y + + V P S+ + + + GE
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
S + G P P + W+++GKLI+ + + + + LT+ D G Y + TNK G
Sbjct: 117 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
Query: 191 TVESAANLNV 200
E A L V
Sbjct: 177 EDEKQAFLQV 186
Score = 123 bits (310), Expect = 2e-32
Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 31/212 (14%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLI 171
+ E + +GE A + +V P+P V W + + + + L ++
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTG 231
+ D+G Y + + ++ V +V+
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIV------------------IVNV--------- 95
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTL 290
P S+ + + + GE S + G P P + W+++GKLI+ + + + + L
Sbjct: 96 -PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T+ D G Y + TNK G E A L V
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 114 bits (288), Expect = 2e-29
Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 12/186 (6%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLI 293
+ E + +GE A + +V P+P V W + + + + L ++
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 294 QCSTKDKGRYSVKVTNK-EGTVESAANLNVDQGKAEFI--KKLDDLEVKERENAVLEVEV 350
+ D+G Y + + G ++ + + +K + + E
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 122
Query: 351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQET 405
+ + + WF++G+ I+ ++K ++ T +L +RNI D G Y C + E
Sbjct: 123 SGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 406 SAELNV 411
A L V
Sbjct: 181 QAFLQV 186
Score = 110 bits (276), Expect = 7e-28
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 19/190 (10%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT--SKKVTIEKKGTIRKLLI 385
F + + E K+ E+A + V+S V W +E+ T + + L I
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQI 61
Query: 386 RNISVHDEGEYTC-----SLPDQETSAELNVVELPPEISVP--LQDVKVSRDEKASFEIE 438
NI+ DEG Y C + + + + +V +PP IS+P + R E+ +F
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121
Query: 439 LTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDK 495
G + W+++GK I +E L +L + + D G Y CR G+
Sbjct: 122 -ASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGED 178
Query: 496 ESKATLTVEA 505
E +A L V
Sbjct: 179 EKQAFLQVFV 188
Score = 94.1 bits (234), Expect = 3e-22
Identities = 42/243 (17%), Positives = 70/243 (28%), Gaps = 60/243 (24%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
+ + + E A V W +E+ + ++ L
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN-L 59
Query: 473 IIFSAGLEDAGEYSC--RVGDTGDKESKA-TLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
I + D G Y C RV G+ + + + V P
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP----------------------- 96
Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
P I ++ T + + + SP P+
Sbjct: 97 -----PAIS----------------------MPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 590 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
I WFRN K + + + I G N L ++ +D G Y ATN+ G A + V
Sbjct: 130 ISWFRNGKLIEENE--KYILKGSNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQV 186
Query: 650 DVE 652
V+
Sbjct: 187 FVQ 189
Score = 82.1 bits (203), Expect = 4e-18
Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 40/184 (21%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
F E + K+ ++ +V +SPAP++ W +N+ + + R N L+
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQ 60
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
+ +++D G Y+ E + V V PP
Sbjct: 61 ILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PP------------------- 97
Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVP 737
+ P ++GE++ R P P W NG +I
Sbjct: 98 ----------------AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE 141
Query: 738 SKRV 741
+++
Sbjct: 142 NEKY 145
Score = 35.1 bits (81), Expect = 0.043
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 48/140 (34%)
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSK------------ 739
+ P+ K+GED ++ R + P P W + +
Sbjct: 1 SMLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 740 -----------------RVKGKAE-----------------FIKKLDDLEVKERENAVLE 765
RV+ + E +K + + E
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 766 VEVTSD-KADVKWFKNNSLI 784
+ + + WF+N LI
Sbjct: 120 CRASGSPEPAISWFRNGKLI 139
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 134 bits (338), Expect = 1e-34
Identities = 58/343 (16%), Positives = 106/343 (30%), Gaps = 63/343 (18%)
Query: 12 PPTFSKKTKPVYAEENSEVTLE-------VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQ 64
+ K + E V L + P +L W+ N E ++
Sbjct: 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE----EE 73
Query: 65 SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
+ M + + + + + G Y +N KM I ++V +
Sbjct: 74 TRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP--FISYPQI 131
Query: 125 ITEGESAVL-----SVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNTHTLTLIQCSTKD 177
+T S VL S + K++WYKD L+ + + S + T L + + +D
Sbjct: 132 LTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALED 191
Query: 178 KGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPS 237
G Y +T + +++ K+ +ET P
Sbjct: 192 AGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI-----------------------PV 228
Query: 238 ILEPLHDVSITEGESAVLSVQVG---GEPSPKVEWYK-DGKLIKD-----------RQIT 282
I+ PL +S + G + +V G P + W+ + I+ RQ
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 283 SEKN----THTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANL 320
SE N L + +D + V N +
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 127 bits (319), Expect = 4e-32
Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 49/310 (15%)
Query: 244 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLI 293
EGE L + P + W+K+ + + L L+
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLL 86
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLE-VKERENAVLEVEVTS 352
+D G Y N + + L V + F+ + + + + VL S
Sbjct: 87 PALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLS 146
Query: 353 DKA------DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--SLPDQE 404
+ ++W+KD + + + +GT LL+ ++++ D G Y C + +
Sbjct: 147 EFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEG 205
Query: 405 T------SAELNVVE----LPPEISVPLQDVKVSRDEKASFE--------------IELT 440
S EL + + P I PL+ + S + + + T
Sbjct: 206 QQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWT 265
Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQK---LIIFSAGLEDAG-EYSCRVGDTGDKE 496
D ++ G + S + + LI ED ++ C V +T +
Sbjct: 266 ANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ 325
Query: 497 SKATLTVEAP 506
+ TV+
Sbjct: 326 T-LRTTVKEH 334
Score = 116 bits (291), Expect = 2e-28
Identities = 54/384 (14%), Positives = 96/384 (25%), Gaps = 91/384 (23%)
Query: 301 GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD------- 353
++++ G S + E E L
Sbjct: 2 DPFTLQPAAHTGAARSCR---------FRGRHYKREFRLEGEPVALRCPQVPYWLWASVS 52
Query: 354 -KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAE 408
+ ++ W K+ + L + D G Y C + + S E
Sbjct: 53 PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112
Query: 409 LNVVELPP-EISVPLQDVKVSRDEKASFEIELTKGDAL------VKWYKDGKEIAFSENV 461
L V E + ++ ++WYKD +
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK 172
Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLV 520
LS+ G L++ LEDAG Y C + ++ T ++E + +
Sbjct: 173 FLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETI----- 226
Query: 521 PHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMA 580
P+ I + + + +
Sbjct: 227 --------------------------------------PVIISPLKTISASLGSRLTIPC 248
Query: 581 KVKA---SPAPSIVWFRNNKPLLSSPKKREIF----------DGENI---ILELKEADSE 624
KV +P +++W+ N + S + EN L E
Sbjct: 249 KVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTRE 308
Query: 625 TDAG-DYKVVATNELGSATHGARV 647
D D+K V N L T V
Sbjct: 309 -DLHMDFKCVVHNTLSFQTLRTTV 331
Score = 102 bits (255), Expect = 8e-24
Identities = 39/316 (12%), Positives = 78/316 (24%), Gaps = 70/316 (22%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--------VKWYKDGKEIAFSENVTL 463
+ E + + W+K+
Sbjct: 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEET 74
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
+ + L + A ED+G Y C + + L V FL + ++
Sbjct: 75 RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTL 134
Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
CP L
Sbjct: 135 STSGVL--------------------VCP-------------------------DLSEFT 149
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
+ I W++++ L +K G L + + E DAG Y+ V T
Sbjct: 150 RDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-HLLVHDVALE-DAGYYRCVLTFAHEGQQ 207
Query: 643 HGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVE---TAPVIDPP 699
+ ++++ ++ + +I + I SP ++ + + +
Sbjct: 208 YNITRSIEL-RIKKKKEETIPV----------IISPLKTISASLGSRLTIPCKVFLGTGT 256
Query: 700 PPPEVLVKKGEDLKIE 715
P +L D IE
Sbjct: 257 PLTTMLWWTANDTHIE 272
Score = 67.0 bits (163), Expect = 4e-12
Identities = 30/272 (11%), Positives = 71/272 (26%), Gaps = 42/272 (15%)
Query: 544 LFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRL-------MAKVKASPAPSIVWFRNN 596
+ P G+ ++ + E + L SP ++ W +N+
Sbjct: 4 FTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND 63
Query: 597 KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGR 656
++ ++ L L A E D+G Y N + V
Sbjct: 64 SARTVPGEEETRMWAQDGALWLLPALQE-DSGTYVCTTRNASYCDKMSIELRVFENTDAF 122
Query: 657 PPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAP-----------VIDPPPPPEVL 705
P S + + D+ + ++D +
Sbjct: 123 LPFISYPQIL-------TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175
Query: 706 VKKGEDLKI-EVRFK---------ALPPPKAEWTVNGTV--IVPSKRVKGKAEFIKKLDD 753
V+ L + +V + ++ + ++ + K+ + I L
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKT 235
Query: 754 LEVKERENAVLEVEVT----SDKADVKWFKNN 781
+ + +V + + W+ N
Sbjct: 236 ISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267
Score = 44.7 bits (105), Expect = 7e-05
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVA---VPEPDLLWYYNGEPLQETD-------- 57
E P K + A S +T+ ++ P +LW+ + E+
Sbjct: 223 EETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282
Query: 58 -EVVFSDQSDMHSYVSIVTIKSIKKREEGV-YTVVAKNREGEAKMDIPVKV 106
+++ + + + + + + + V N + VK
Sbjct: 283 GPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 129 bits (326), Expect = 1e-34
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 6/169 (3%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 290
P+ P I PL V E A V P P++ W ++ LIK D + + +N L
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
T++ D G Y N G + + K + + ++++ E AVL
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ K V W K ++ + ++ + + G+ L I N+ D G+Y C
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRC 170
Score = 124 bits (314), Expect = 5e-33
Identities = 54/215 (25%), Positives = 75/215 (34%), Gaps = 34/215 (15%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTL 168
P+ P I PL V E A V P P++ W ++ LIK D + + +N L
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
T++ D G Y N G + LQV
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCG---------------------------ALQV 97
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
KP I P +V I EG AVL G P P V W K +++ + +
Sbjct: 98 K----MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG 153
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
+L + +D G+Y N GT S L V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 116 bits (292), Expect = 6e-30
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 9/190 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + + V A T + + P+P++ W N ++ D ++
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG----- 61
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
++TI S++ ++G+Y A N G A KP I P +V I EG A
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK---MKPKITRPPINVKIIEGLKA 118
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
VL G P P V W K +++ + + +L + +D G+Y N GT
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178
Query: 192 VESA-ANLNV 200
S L V
Sbjct: 179 AYSKLVKLEV 188
Score = 113 bits (285), Expect = 5e-29
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 16/190 (8%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLI 385
L+ ++ E A V S + ++ W ++ IK + +I + G + L I
Sbjct: 9 VITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LTI 66
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
++ D+G Y C + S V++ P+I+ P +VK+ KA T
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT-TM 125
Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESK 498
G+ V W K + + + + G L I + EDAG+Y C ++ G SK
Sbjct: 126 GNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Query: 499 -ATLTVEAPA 507
L VE A
Sbjct: 183 LVKLEVEVFA 192
Score = 97.1 bits (242), Expect = 3e-23
Identities = 48/248 (19%), Positives = 77/248 (31%), Gaps = 69/248 (27%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEI-AFSENVTLSIDGK 468
+ P I+ PL+ V +E A+F + + W ++ I F ++ +G
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCA-VESYPQPEISWTRNKILIKLFDTRYSIRENG- 61
Query: 469 KQKLIIFSAGLEDAGEYSCR----VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
Q L I S D G Y C VG ES L V+
Sbjct: 62 -QLLTILSVEDSDDGIYCCTANNGVGGA--VESCGALQVKMK------------------ 100
Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
P + E L
Sbjct: 101 ----------------------------------PKITRPPINVKIIEGLKAVLPCTTMG 126
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-TH 643
+P PS+ W + + L + + + G I + + DAG Y+ VA N LG+A +
Sbjct: 127 NPKPSVSWIKGDSALRENSRIAVLESGSLRIHNV----QKEDAGQYRCVAKNSLGTAYSK 182
Query: 644 GARVTVDV 651
++ V+V
Sbjct: 183 LVKLEVEV 190
Score = 77.1 bits (190), Expect = 2e-16
Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 45/187 (24%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
+AP+ E + M V++ P P I W RN + + I + +L
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-LL 64
Query: 617 ELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
+ ++D G Y A N +G A + V +
Sbjct: 65 TILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKM------------------------ 99
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
P I PP V + +G + P P W + +
Sbjct: 100 -----------------KPKIT-RPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 736 VPSKRVK 742
+ R+
Sbjct: 142 RENSRIA 148
Score = 61.3 bits (149), Expect = 6e-11
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P ++ V E + L + P+P + W L+E + + +
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSL--- 155
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA 98
I +++K + G Y VAKN G A
Sbjct: 156 ----RIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 41.3 bits (97), Expect = 4e-04
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 45/140 (32%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR--------- 740
+ APVI P V E ++ P P+ WT N +I
Sbjct: 4 LPKAPVITTPLET-VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 741 ----------------------------------VKGKAEFIKKLDDLEVKERENAVLEV 766
VK K + + ++++ E AVL
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122
Query: 767 EVTSD-KADVKWFKNNSLIK 785
+ K V W K +S ++
Sbjct: 123 TTMGNPKPSVSWIKGDSALR 142
Score = 33.9 bits (78), Expect = 0.12
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
++++ L+ ++ E A V S + ++ W +N LIK
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK 49
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 129 bits (327), Expect = 2e-34
Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 21/209 (10%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 289
P I+ + + G A G+P P + W K+GK + + + +
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 290 LTLIQ--CSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKA------EFIKKLDDLEVKE 340
+ I+ + +D Y N G SA A L + +G + ++
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
++ + + ++ W K+ ++ S K G L I N D+G+Y C
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQGKYECV 181
Query: 399 ---SLPDQETSAELNVVELPPEISVPLQD 424
S+ + + A V++ +
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHHHH 210
Score = 127 bits (322), Expect = 8e-34
Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 37/221 (16%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHT 167
P I+ + + G A G+P P + W K+GK + + + +
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 168 LTLIQ--CSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELD 224
+ I+ + +D Y N G SA A L + E +TP
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-----YEGDKTPAGF--------- 110
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT 282
P I + I G + +++ + G P+P + W K+ + + + +
Sbjct: 111 -----------PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS 159
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNV 322
+ L + +D+G+Y N GT S A NL V
Sbjct: 160 LK--DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV 198
Score = 119 bits (300), Expect = 8e-31
Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 18/213 (8%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP +K + + P P ++W NG+ + T + +
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP--GGI 63
Query: 72 SIVTIKSIKKRE-EGVYTVVAKNREGE---AKMDIPVKVNTGKPEK-PSILEPLHDVSIT 126
SI+ I+ ++ + Y VA+N G+ A + + P P I + I
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSVK 184
G + +++ + G P+P + W K+ + + + + + L + +D+G+Y
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--DGFLQIENSREEDQGKYECV 181
Query: 185 VTNKEGTVES-AANLNVDPYEPKESKETPPSPP 216
N GT S A NL V + +
Sbjct: 182 AENSMGTEHSKATNLYV------KVRRVGTKHH 208
Score = 109 bits (274), Expect = 2e-27
Identities = 54/257 (21%), Positives = 85/257 (33%), Gaps = 62/257 (24%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDG 467
PPEI Q+ V ASF GD + W K+GK+++ +++ L G
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 468 KKQKLIIFSAGL-EDAGEYSC----RVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
L I D Y C VGD + ATLT+
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDA--VSADATLTIYEGDKT------------- 106
Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
P P+ + + ++ T+ + K
Sbjct: 107 --------------------------------PAGFPVITQGPGTRVIEVGHTVLMTCKA 134
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA- 641
+P P+I W +N + S + + DG I + E D G Y+ VA N +G+
Sbjct: 135 IGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR----EEDQGKYECVAENSMGTEH 190
Query: 642 THGARVTVDVEKVGRPP 658
+ + V V +VG
Sbjct: 191 SKATNLYVKVRRVGTKH 207
Score = 99.5 bits (248), Expect = 8e-24
Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 23/200 (11%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK--VTIEKKGTIRKLL 384
E I+K + V+ A D + W K+G+++ ++ +E+ G I L
Sbjct: 8 EIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILR 67
Query: 385 IRNI-SVHDEGEYTCS-----LPDQETSAELNVVEL------PPEISVPLQDVKVSRDEK 432
I + + D+ Y C A L + E P I+ +
Sbjct: 68 IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHT 127
Query: 433 ASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
+ G+ + W K+ ++ S DG L I ++ ED G+Y C
Sbjct: 128 VLMTCK-AIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF---LQIENSREEDQGKYECVAE 183
Query: 491 -DTGDKESKAT-LTVEAPAV 508
G + SKAT L V+ V
Sbjct: 184 NSMGTEHSKATNLYVKVRRV 203
Score = 89.9 bits (223), Expect = 1e-20
Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 38/189 (20%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGENI 614
P I + + + V+ G + P PSIVW +N K + + + + G
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 615 ILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
IL ++ + D Y+ VA N +G A + A +T+
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG--------------------- 103
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGT 733
+K PVI P +++ G + + + P P W N T
Sbjct: 104 -------------DKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQT 149
Query: 734 VIVPSKRVK 742
+ S
Sbjct: 150 KVDMSNPRY 158
Score = 37.8 bits (88), Expect = 0.006
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 733 TVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
T+ K G + ++ ++ + + ++ W KN + +
Sbjct: 99 TIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD 152
Score = 33.2 bits (76), Expect = 0.20
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 741 VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
E I+K + V+ A D + W KN +
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS 48
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 125 bits (316), Expect = 3e-33
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 9/169 (5%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTL 292
+ L V ++ GES + GEP + G+ I + E LT+
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS 352
+ +D G Y + T+ +G + A + K F + + E K+ E+A + V+S
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 353 D-KADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLIRNISVHDEGEYTC 398
V W +E+ T + + L I NI+ DEG Y C
Sbjct: 123 SPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDEGIYRC 168
Score = 122 bits (309), Expect = 3e-32
Identities = 37/215 (17%), Positives = 72/215 (33%), Gaps = 38/215 (17%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLTL 170
+ L V ++ GES + GEP + G+ I + E LT+
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT 230
+ +D G Y + T+ +G + A L++
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATV---------------------------VLEIY- 94
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
+K + E + +GE A + +V P+P V W + + D + N
Sbjct: 95 ---QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN- 150
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ L ++ + D+G Y + + ++ V
Sbjct: 151 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
Score = 118 bits (298), Expect = 7e-31
Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 13/193 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ V + PE + GE + T VV +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR-- 59
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKM-DIPVKVNTGKPEKPSILEPLHDVSITEGES 130
+TI + + G+Y A + +G+ + + +++ +K + E + +GE
Sbjct: 60 --LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY----QKLTFREVVSPQEFKQGED 113
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
A + +V P+P V W + + D + N + L ++ + D+G Y +
Sbjct: 114 AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 172
Query: 188 KEGTVESAANLNV 200
+ ++ V
Sbjct: 173 EARGEIDFRDIIV 185
Score = 108 bits (272), Expect = 2e-27
Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 12/186 (6%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ L +E+ E+ + ++ + G++I ++++V ++K+G +L I
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIY 63
Query: 387 NISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
N ++ D G Y C QE + L + + + + + E A
Sbjct: 64 NANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSPQEFKQGEDAEVVCR-VS 121
Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESK 498
V W +E+ + ++ L I + D G Y C + +
Sbjct: 122 SSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDF 180
Query: 499 ATLTVE 504
+ V
Sbjct: 181 RDIIVI 186
Score = 104 bits (261), Expect = 8e-26
Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 67/245 (27%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
++++ L V++S E F G+ + G++I ++ V + +G + +L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCT-AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 473 IIFSAGLEDAGEYSCR----VGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
I++A +EDAG Y C+ G T +E+ L +
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQT--QEATVVLEIYQK---------------------- 96
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
F E + K+ ++ +V +SPAP
Sbjct: 97 ------------------------------LTFREVVSPQEFKQGEDAEVVCRVSSSPAP 126
Query: 589 SIVWFRNNKPLLSSPKKREIFDGEN--IILELKEADSETDAGDYKVVATNELGSATHGAR 646
++ W +N+ + + R N IL + +++D G Y+ E
Sbjct: 127 AVSWLYHNEEVTTISDNRFAMLANNNLQILNI----NKSDEGIYRCEGRVEARGEIDFRD 182
Query: 647 VTVDV 651
+ V V
Sbjct: 183 IIVIV 187
Score = 74.8 bits (184), Expect = 1e-15
Identities = 21/186 (11%), Positives = 44/186 (23%), Gaps = 44/186 (23%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
+ + + P + + ++S+ + +G L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 61
Query: 618 LKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
+ A + DAG Y+ AT+ G + +
Sbjct: 62 IYNA-NIEDAGIYRCQATDAKGQTQEATVVLEIYQ------------------------- 95
Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
P K+GED ++ R + P P W + +
Sbjct: 96 ----------------KLTFREVVSP-QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138
Query: 737 PSKRVK 742
+
Sbjct: 139 TISDNR 144
Score = 46.7 bits (111), Expect = 6e-06
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 45/132 (34%)
Query: 699 PPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------ 740
+V + GE P + G I+ ++R
Sbjct: 7 ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 66
Query: 741 --------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KA 773
+ K F + + E K+ E+A + V+S
Sbjct: 67 IEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP 126
Query: 774 DVKWFKNNSLIK 785
V W +N +
Sbjct: 127 AVSWLYHNEEVT 138
Score = 29.0 bits (65), Expect = 4.0
Identities = 4/41 (9%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ L +E+ E+ + ++ + I
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKII 44
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 129 bits (326), Expect = 1e-32
Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 34/279 (12%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----------KDRQITSE 284
+P I++ + + E L GEP P++ W + ++ +
Sbjct: 1 QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ +L + D GRY + ++ G + + L++ + +FI E
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI-EYAPKFISNQTIYYSWEGNPI 118
Query: 345 VLEVEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP 401
+ +V S+ A + W +D + K + + G L I S +D G Y C+
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 402 ----DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-------KGDALVKWYK 450
+ L + ++P VK+ E + +++ G + +
Sbjct: 179 NHIGTRFQEYILALADVPS----SPYGVKII--ELSQTTAKVSFNKPDSHGGVPIHHYQV 232
Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
D KE+A + G + +++ LE Y RV
Sbjct: 233 DVKEVASEIWKIVRSHGVQTMVVL--NNLEPNTTYEIRV 269
Score = 128 bits (324), Expect = 2e-32
Identities = 36/225 (16%), Positives = 69/225 (30%), Gaps = 48/225 (21%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----------KDRQITSE 162
+P I++ + + E L GEP P++ W + ++ +
Sbjct: 1 QPHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+ +L + D GRY + ++ G + + L+++
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE--------------------- 98
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR--- 279
P + EG +S V P + W +D ++ +
Sbjct: 99 -----------YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT 147
Query: 280 --QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ S L + S D GRY+ TN GT L +
Sbjct: 148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
Score = 120 bits (303), Expect = 1e-29
Identities = 45/216 (20%), Positives = 71/216 (32%), Gaps = 22/216 (10%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSD---QSDMHS 69
P + K EN +VTL P P++ W + T+ D +
Sbjct: 2 PHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
S + IK +K + G Y A +R G + + + + P + EG
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE----YAPKFISNQTIYYSWEGN 116
Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTHTLTLIQCSTKDKGRYSVK 184
+S V P + W +D ++ + + S L + S D GRY+
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176
Query: 185 VTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVV 220
TN GT L + PS P V
Sbjct: 177 ATNHIGTRFQEYILAL---------ADVPSSPYGVK 203
Score = 97.6 bits (243), Expect = 9e-22
Identities = 41/246 (16%), Positives = 71/246 (28%), Gaps = 67/246 (27%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSE-------NVTLSID 466
P I + L++ + + + + +G+ + W + F+E + +
Sbjct: 2 PHI-IQLKNETTYENGQVTLVCD-AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 467 GKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
L I L D+G Y C G + L +E
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA------------------- 100
Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
P FI E I + VK++
Sbjct: 101 ---------------------------------PKFISNQTIYYSWEGNPINISCDVKSN 127
Query: 586 PAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 643
P SI W R+ L ++ + G +ILE+ D G Y ATN +G+
Sbjct: 128 PPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN-DFGRYNCTATNHIGTRFQ 186
Query: 644 GARVTV 649
+ +
Sbjct: 187 EYILAL 192
Score = 78.7 bits (194), Expect = 1e-15
Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 17/218 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P F Y+ E + + + + + P + W + L + S
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK-- 157
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
I+ I + G Y A N G + + + P P ++ + ++S +A
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL-ADVPSSPYGVK-IIELS---QTTA 212
Query: 132 VLSVQVGGE--PSPKVEW---YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
+S P + K+ + + S + L V
Sbjct: 213 KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAV 272
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
N +G + + + PSPP
Sbjct: 273 NGKGQGDYSK-----IEIFQTLPVREPSPPSIHGQPSS 305
Score = 78.3 bits (193), Expect = 2e-15
Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 51/206 (24%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-------FDG 611
P I+ + +T E G + L+ + P P I W R + + +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
+ L +K+ +D+G Y A + +G +
Sbjct: 61 GSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLD----------------------- 96
Query: 672 LDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVN 731
+E AP +G + I K+ PP W +
Sbjct: 97 ------------------IEYAPKFISNQTI-YYSWEGNPINISCDVKSNPPASIHWRRD 137
Query: 732 GTVIVPSKRVKGKAEFIKKLDDLEVK 757
V+ K + LE+
Sbjct: 138 KLVLPAKNTTNLKTYSTGRKMILEIA 163
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 125 bits (314), Expect = 2e-32
Identities = 45/241 (18%), Positives = 77/241 (31%), Gaps = 49/241 (20%)
Query: 103 PVKVNTGKPE--KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KD 156
V+TG P +P ++ +++ + G P+P + W K+G+ +
Sbjct: 4 DTGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62
Query: 157 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
I +L + D+G Y+ V NK G++ L+V E P P
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV--------LERSPHRP 114
Query: 217 PYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG--- 273
+ + G +V + P ++W K
Sbjct: 115 IL-------------------QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVN 155
Query: 274 ------------KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
++K S + L L S +D G Y + TN G E A L+
Sbjct: 156 GSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Query: 322 V 322
V
Sbjct: 216 V 216
Score = 117 bits (295), Expect = 6e-30
Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 29/230 (12%)
Query: 226 LQVNTGKPE--KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI----KDR 279
V+TG P +P ++ +++ + G P+P + W K+G+ +
Sbjct: 5 TGVDTGAPYWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 63
Query: 280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE----FIKKLDD 335
I +L + D+G Y+ V NK G++ L+V + +
Sbjct: 64 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPAN 123
Query: 336 LEVKERENAVLEVEVTSD-KADVKWFKDGQE------------IKTSKKVTIEKKGTIRK 382
+ +V SD + ++W K + + K E +
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVS 428
L + N+S D GEY C + E + L+V P L + +
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG-PRAAEEELVEADEA 232
Score = 112 bits (282), Expect = 3e-28
Identities = 42/241 (17%), Positives = 77/241 (31%), Gaps = 34/241 (14%)
Query: 12 PPTFSKKT----KPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSD 66
P +++ K + + V P P + W NG + + +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP-SILEPLHDVSI 125
S + ++S+ + G YT V +N+ G + + V P +P + +
Sbjct: 71 QWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTA 126
Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDG---------------KLIKDRQITSEKNTHTLTL 170
G +V + P ++W K ++K S + L L
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT 230
S +D G Y + TN G E A L+V P + +V + V+
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSV---------HGPRAAEEELVEADEAGSVHH 237
Query: 231 G 231
Sbjct: 238 H 238
Score = 98.9 bits (246), Expect = 2e-23
Identities = 47/289 (16%), Positives = 80/289 (27%), Gaps = 72/289 (24%)
Query: 406 SAELNVVELPPEISVPL----QDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSE 459
+ V P + P + + V F G+ + W K+G+E
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP-AAGNPTPSISWLKNGREFRGEH 60
Query: 460 NV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSV 517
+ + + ++ L++ S D G Y+C V G TL V +
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS---------- 110
Query: 518 TLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR 577
P + L +T +
Sbjct: 111 -------------------------------------PHRPILQAGLPANQTAVLGSDVE 133
Query: 578 LMAKVKASPAPSIVWFRNNKPLLSSPKK------------REIFDGENIILELKEADSET 625
KV + P I W ++ + S ++ L L SE
Sbjct: 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SER 192
Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDID---RNHVHH 671
D G+Y ATN +G A ++V + + D +H HH
Sbjct: 193 DGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVHHHHHH 241
Score = 92.7 bits (230), Expect = 3e-21
Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 33/237 (13%)
Query: 318 ANLNVDQGKAEFIKKLD----DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV 372
+ VD G + + L V + + W K+G+E + ++
Sbjct: 3 PDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 62
Query: 373 -TIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE----LPPEISVPLQ 423
I+ + L++ ++ D G YTC + L+V+E P +
Sbjct: 63 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122
Query: 424 DVKVSRDEKASFEIELTKGDAL--VKWYK----DGKEIAFSENVTLSIDGKK-------- 469
+ F + DA ++W K +G ++ +++
Sbjct: 123 NQTAVLGSDVEFHCK-VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAV---EFLTKLPSVTLVPH 522
+L + + D GEY CR G E L+V P E + + ++ H
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAGSVHHH 238
Score = 53.0 bits (127), Expect = 9e-08
Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQET---DEVVFSDQSDMH 68
P + A S+V ++ + +P + W + E D +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 69 SYVSIV-----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDV 123
S+ + ++ +R+ G Y A N G A+ + V+ + + ++E
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADEAG 233
Query: 124 SITEGES 130
S+
Sbjct: 234 SVHHHHH 240
Score = 37.6 bits (87), Expect = 0.010
Identities = 19/153 (12%), Positives = 31/153 (20%), Gaps = 52/153 (33%)
Query: 681 STEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
T VD P T P + V ++ P P W NG R
Sbjct: 4 DTGVDTGAPYWTRPERMDKKL--LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 741 VK--------------------------------GKAE-----------------FIKKL 751
+ G
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 752 DDLEVKERENAVLEVEVTSD-KADVKWFKNNSL 783
+ + +V SD + ++W K+ +
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 154
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 122 bits (308), Expect = 4e-32
Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 44/222 (19%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLI 171
S+ + + + GE S + G P P + W+++GKLI+ + + + + LT+
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTG 231
D G Y + TNK G E A L V
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVF------------------------------ 93
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR----------QI 281
+P I++ + + E L GEP P++ W + ++
Sbjct: 94 --VQPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ + +L + D GRY + ++ G + + L+++
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 116 bits (293), Expect = 4e-30
Identities = 37/190 (19%), Positives = 77/190 (40%), Gaps = 15/190 (7%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLI 293
S+ + + + GE S + G P P + W+++GKLI+ + + + + LT+
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD 353
D G Y + TNK G E A L V + I+ ++ E L + +
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQV-FVQPHIIQLKNE-TTYENGQVTLVCDAEGE 121
Query: 354 -KADVKWFKDGQEIKTSK-------KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLP 401
++ W + ++ ++ ++ + L I+++ + D G Y C +
Sbjct: 122 PIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Query: 402 DQETSAELNV 411
+ S L++
Sbjct: 182 GHQKSMYLDI 191
Score = 115 bits (290), Expect = 1e-29
Identities = 38/200 (19%), Positives = 82/200 (41%), Gaps = 21/200 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ +K+ AE E+T R PEP + W+ NG+ ++E ++ + +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE---- 59
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
+T+++I + G Y A N+ GE + ++V +P I++ + + E
Sbjct: 60 --LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF----VQPHIIQLK-NETTYENGQV 112
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIKDR----------QITSEKNTHTLTLIQCSTKDKGRY 181
L GEP P++ W + ++ + + +L + D GRY
Sbjct: 113 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172
Query: 182 SVKVTNKEGTVESAANLNVD 201
+ ++ G + + L+++
Sbjct: 173 DCEAASRIGGHQKSMYLDIE 192
Score = 100 bits (250), Expect = 2e-24
Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 20/192 (10%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+K + + E + + + WF++G+ I+ ++K ++ T +L +R
Sbjct: 6 SMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVR 63
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
NI D G Y C + E A L V P I + L++ + + + + +G
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFV-QPHI-IQLKNETTYENGQVTLVCD-AEG 120
Query: 443 DAL--VKWYKDGKEIAFSEN-------VTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DT 492
+ + + W + F+E + + L I L D+G Y C
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 493 GDKESKATLTVE 504
G + L +E
Sbjct: 181 GGHQKSMYLDIE 192
Score = 93.7 bits (233), Expect = 4e-22
Identities = 44/248 (17%), Positives = 75/248 (30%), Gaps = 69/248 (27%)
Query: 415 PPEISVPL--QDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQ 470
P IS+P + R E+ +F + G + W+++GK I +E L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN--T 58
Query: 471 KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
+L + + D G Y CR G+ E +A L V
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ----------------------- 95
Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
P I+ E T E G + L+ + P P
Sbjct: 96 -----------------------------PHIIQLKNE-TTYENGQVTLVCDAEGEPIPE 125
Query: 590 IVWFRNNKPLLSSPKKREI-------FDGENIILELKEADSETDAGDYKVVATNELGSAT 642
I W R + + + + L +K+ D+G Y A + +G
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS-DSGRYDCEAASRIGGHQ 184
Query: 643 HGARVTVD 650
+ ++
Sbjct: 185 KSMYLDIE 192
Score = 72.9 bits (179), Expect = 6e-15
Identities = 31/187 (16%), Positives = 51/187 (27%), Gaps = 48/187 (25%)
Query: 558 APLFI--ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
P ++ T + + + SP P+I WFRN K + + + I G N
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTE 59
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
L ++ +D G Y ATN+ G A + V V
Sbjct: 60 LTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFV------------------------ 94
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
P I + + + P P+ W
Sbjct: 95 -----------------QPHIIQLKNETTYE--NGQVTLVCDAEGEPIPEITWKRAVDGF 135
Query: 736 VPSKRVK 742
++ K
Sbjct: 136 TFTEGDK 142
Score = 37.9 bits (88), Expect = 0.005
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 41/129 (31%)
Query: 694 PVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK----------- 742
+ P ++GE++ R P P W NG +I +++
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 743 ------------------GKAEF-----------IKKLDDLEVKERENAVLEVEVTSD-K 772
G+ E I +L + E L + +
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPI 123
Query: 773 ADVKWFKNN 781
++ W +
Sbjct: 124 PEITWKRAV 132
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 123 bits (310), Expect = 6e-32
Identities = 43/241 (17%), Positives = 68/241 (28%), Gaps = 49/241 (20%)
Query: 104 VKVNTGKPEKPSILEPL----HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---- 155
V N+ P ++ + GG P P + W K+GK K
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 65
Query: 156 DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSP 215
+L + DKG Y+ V N+ G++ +L+V E
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV--------VERSRHR 117
Query: 216 PPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 275
P + S G +V + P ++W K +
Sbjct: 118 P-------------------ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158
Query: 276 --------------IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
+ + N L L + D G Y KV+N G +A L
Sbjct: 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
Query: 322 V 322
V
Sbjct: 219 V 219
Score = 120 bits (301), Expect = 8e-31
Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 29/224 (12%)
Query: 220 VSELDTLQVNTGKPEKPSILEPL----HDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 275
++E D + N+ P ++ + GG P P + W K+GK
Sbjct: 1 MAE-DFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE 59
Query: 276 IK----DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE--- 328
K +L + DKG Y+ V N+ G++ +L+V +
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 329 -FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK---- 382
+ + +V SD + ++W K ++ + + K
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 383 -------LLIRNISVHDEGEYTC----SLPDQETSAELNVVELP 415
L + N++ D GEY C + SA L V+
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
Score = 111 bits (278), Expect = 9e-28
Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 26/228 (11%)
Query: 5 ADILEGIPPTFSKKTKP----VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV- 59
+ P ++ K + V P P + W NG+ ++ +
Sbjct: 8 ENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG 67
Query: 60 VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP-SILE 118
+ ++ S + ++S+ ++G YT V +N G + V +P
Sbjct: 68 GYKVRNQHWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAG 123
Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKL--------------IKDRQITSEKN 164
+ S G +V + P ++W K + + + N
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DPYEPKESKE 210
L L + D G Y KV+N G +A L V P KE
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231
Score = 93.0 bits (231), Expect = 2e-21
Identities = 43/226 (19%), Positives = 67/226 (29%), Gaps = 62/226 (27%)
Query: 446 VKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
++W K+GKE + + + LI+ S D G Y+C V + G L V
Sbjct: 51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110
Query: 504 EAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIE 563
S + L
Sbjct: 111 VER-----------------------------------------------SRHRPILQAG 123
Query: 564 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-----------PLLSSPKKREIFDGE 612
+ G + + KV + P I W ++ + P L K I
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
+L L +E DAG+Y +N +G A A +TV + K P
Sbjct: 184 AEVLALFNV-TEADAGEYICKVSNYIGQANQSAWLTV-LPKQQAPG 227
Score = 86.1 bits (213), Expect = 4e-19
Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 25/196 (12%)
Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKV-TIEKKGTIRKLLIRNISVHD 392
V + ++W K+G+E K ++ + + L++ ++ D
Sbjct: 28 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 87
Query: 393 EGEYTC----SLPDQETSAELNVVEL----PPEISVPLQDVKVSRDEKASFEIELTKGDA 444
+G YTC + L+VVE P + + F + DA
Sbjct: 88 KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK-VYSDA 146
Query: 445 L--VKWYK-----------DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG- 490
++W K DG + + L +F+ DAGEY C+V
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 491 DTGDKESKATLTVEAP 506
G A LTV
Sbjct: 207 YIGQANQSAWLTVLPK 222
Score = 70.7 bits (173), Expect = 8e-14
Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 43/195 (22%)
Query: 554 SPGQAPLFIERFEEK----TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREI 608
+ +AP + + + V T++ +P P++ W +N K +
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK 70
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNH 668
++ L ++ +D G+Y V NE GS H
Sbjct: 71 VRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINH------------------------- 104
Query: 669 VHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEW 728
+ +DV + P++ P G D++ + + P +W
Sbjct: 105 ------------TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 729 TVNGTVIVPSKRVKG 743
+ G
Sbjct: 153 IKHVEKNGSKYGPDG 167
Score = 36.8 bits (85), Expect = 0.018
Identities = 17/148 (11%), Positives = 27/148 (18%), Gaps = 53/148 (35%)
Query: 690 VETAPVIDPPPPPE---VLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK---- 742
+ AP E V +K P P W NG R+
Sbjct: 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV 71
Query: 743 ----------------------------GKAE-----------------FIKKLDDLEVK 757
G +
Sbjct: 72 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV 131
Query: 758 ERENAVLEVEVTSD-KADVKWFKNNSLI 784
+ +V SD + ++W K+
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKN 159
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 123 bits (310), Expect = 3e-31
Identities = 46/337 (13%), Positives = 96/337 (28%), Gaps = 53/337 (15%)
Query: 12 PPTFSKKTKPVY--AEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMH 68
++ + + + N L + WY + V S +H
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT----PVSTEQASRIH 58
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ + K + G Y V +N ++ I K +P + + +
Sbjct: 59 QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 129 ESAVLS------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
L + PK++WYKD K + I L ++ + K +G Y+
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYT 178
Query: 183 VKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPL 242
+ + + + + + KP +P I+ P
Sbjct: 179 CHASYTYLGKQYPITRVI-----------------------EFITLEENKPTRPVIVSPA 215
Query: 243 HD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT---------------SEKN 286
++ + + G L V G+ S W +G +I +
Sbjct: 216 NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 275
Query: 287 THTLTLIQCSTKD-KGRYSVKVTNKEGTVESAANLNV 322
L + + ++ K ++ N G + L
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 110 bits (275), Expect = 1e-26
Identities = 44/314 (14%), Positives = 79/314 (25%), Gaps = 61/314 (19%)
Query: 118 EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQC 173
E + + E V + E + WYKD ++ ++ L +
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233
+D G Y V N + + EP +
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKL-------------- 115
Query: 234 EKPSILEPLHDVSITEGESAVLS------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
L + PK++WYKD K + I
Sbjct: 116 --------------PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK 161
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEFIK------KLDDLEV 338
L ++ + K +G Y+ + + + + + + + +EV
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV 221
Query: 339 KERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK------------LLI 385
L VT W +G I V E ++ L I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281
Query: 386 RNISVHD-EGEYTC 398
I + +TC
Sbjct: 282 SEIESRFYKHPFTC 295
Score = 109 bits (273), Expect = 2e-26
Identities = 40/307 (13%), Positives = 80/307 (26%), Gaps = 47/307 (15%)
Query: 240 EPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQC 295
E + + E V + E + WYKD ++ ++ L +
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTS 352
+D G Y V N + + + + + + ++ + L
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYME 129
Query: 353 D-------KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQET 405
++W+KD + + K L++ N++ G YTC
Sbjct: 130 FFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYL 186
Query: 406 SAELNV------------VELPPEISVPLQD-VKVSRDEKASFEIELTKGDAL--VKWYK 450
+ + P I P + ++V + +T G W
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKW 245
Query: 451 DGKEIAFSENV------------TLSIDGKKQKLIIFSAGLED-AGEYSCRVG-DTGDKE 496
+G I + V L I ++C G
Sbjct: 246 NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 305
Query: 497 SKATLTV 503
+ L
Sbjct: 306 AYIQLIY 312
Score = 105 bits (264), Expect = 4e-25
Identities = 51/349 (14%), Positives = 87/349 (24%), Gaps = 80/349 (22%)
Query: 335 DLEVKERENAVLEVEVT--SDKADVKWFKDGQE--IKTSKKVTIEKKGTIRKLLIRNISV 390
L E V + K + W+KD + + T + I + L V
Sbjct: 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKV 71
Query: 391 HDEGEYTC----SLPDQETSAELNVVELPPEISVPLQ---DVKVSRDEKASFEIELTKGD 443
D G Y C S VE P + Q K+ +
Sbjct: 72 EDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF 131
Query: 444 AL-------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDK 495
++WYKD K + + + LI+ + + G Y+C T K
Sbjct: 132 KNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYLGK 188
Query: 496 ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSP 555
+ T +E +E
Sbjct: 189 QYPITRVIEFITLEENKPTR---------------------------------------- 208
Query: 556 GQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-------- 606
P+ + E + G I+L+ V + W N +
Sbjct: 209 ---PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVE 265
Query: 607 ----EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ +L + E +S + A N G ++ V
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
Score = 102 bits (256), Expect = 5e-24
Identities = 52/325 (16%), Positives = 93/325 (28%), Gaps = 83/325 (25%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
+ WYKD + S I K+KL A +ED+G Y C V + K +
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 97
Query: 505 --APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI 562
P + + + +P GD CP +
Sbjct: 98 ENEPNLCYNAQAIFKQKLPVAGDGGL--------------------VCPYMEFFKN---- 133
Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 622
+ + P + W+++ KPLL I++ +
Sbjct: 134 --------------------ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV---- 169
Query: 623 SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQST 682
+E G+Y A+ + ++
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEF------------------------------- 198
Query: 683 EVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+ +E+ T PVI P + V G +++ A W NG+VI V
Sbjct: 199 -ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVL 257
Query: 743 GKAEFIKKLDDLEVKERENAVLEVE 767
G+ + + + + VL +
Sbjct: 258 GEDYYSVENPANKRRSTLITVLNIS 282
Score = 52.4 bits (125), Expect = 3e-07
Identities = 38/261 (14%), Positives = 73/261 (27%), Gaps = 43/261 (16%)
Query: 557 QAPLFIERFEEK-TVKEKGTIRLMA-KVKASPAP-SIVWFRNNKPLLSSPKKREIFDGEN 613
+A ER E+ V I + + + +I W++++ S ++
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
L A E D+G Y V N VE N+ I + +
Sbjct: 62 EKLWFVPAKVE-DSGHYYCVVRNSSYCLRIKISAKF-VENEPNLCYNAQAIFKQKLP--- 116
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVL-VKKGEDLKIEVRFKALPPPK------- 725
+ + + P + P++ K + L ++ + +
Sbjct: 117 ------VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVA 170
Query: 726 ----------AEWTVNGT---------VIVPSKRVKGKAEFIKKLDD-LEVKERENAVLE 765
A +T G I + + + ++ +EV L
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLI 230
Query: 766 VEVTSD-KADVKWFKNNSLIK 785
VT W N S+I
Sbjct: 231 CNVTGQLSDIAYWKWNGSVID 251
Score = 47.0 bits (111), Expect = 1e-05
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P S + + + S++ L + W +NG + E D V+ D + +
Sbjct: 208 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 267
Query: 71 --------VSIVTIKSIKKR-EEGVYTVVAKNREGEAKMDIPVKV 106
++++ I I+ R + +T AKN G I +
Sbjct: 268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 117 bits (294), Expect = 3e-31
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 309 NKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKT 368
+ + ++A L V +F + L + E E AVL E+ S A V+W+K + ++
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLRD 60
Query: 369 SKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
+ ++ + G +L IR + D GEY C + TSA L V +P S
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMPSGPS 111
Score = 115 bits (291), Expect = 9e-31
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 398 CSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAF 457
S TSA L V LP + + L++ + + A EL+ A V+W+K + +
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELS-KMAPVEWWKGHETLRD 60
Query: 458 SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
+ +L DG + +L I EDAGEY C G + A LTV A
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE---RTSAMLTVRAMPSGP 110
Score = 76.6 bits (189), Expect = 5e-17
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 21/127 (16%)
Query: 93 NREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK 152
+ + + V + E L + TEG +AVL ++ VEW+K +
Sbjct: 2 SSGSSGRTSAMLTV---RALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHE 56
Query: 153 LIKDR---QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESK 209
++D + + L + +D G Y G ++A L V
Sbjct: 57 TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTV--------- 103
Query: 210 ETPPSPP 216
PS P
Sbjct: 104 RAMPSGP 110
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTLTL 292
E L + TEG +AVL ++ VEW+K + ++D + + L +
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQI 77
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+D G Y G ++A L V
Sbjct: 78 RGLVAEDAGEYLCMC----GKERTSAMLTVR 104
Score = 65.8 bits (161), Expect = 3e-13
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
F E + E T L + + S + W++ ++ L + DG L+
Sbjct: 19 PIKFTEGLRNEEATEGATAVL--RCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQ 76
Query: 618 LKEADSETDAGDYKVVATNELGSAT 642
++ +E DAG+Y + E SA
Sbjct: 77 IRGLVAE-DAGEYLCMCGKERTSAM 100
Score = 60.8 bits (148), Expect = 2e-11
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+P F++ + A E + L L + W+ E L++ D
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGARC 73
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+ I+ + + G Y + A + + P PS
Sbjct: 74 E----LQIRGLVAEDAGEYLCMCGKERTSAMLTV-----RAMPSGPS 111
Score = 46.6 bits (111), Expect = 1e-06
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
+F + L + E E AVL E+ S A V+W+K + ++
Sbjct: 21 KFTEGLRNEEATEGATAVLRCEL-SKMAPVEWWKGHETLR 59
Score = 30.4 bits (69), Expect = 0.77
Identities = 6/53 (11%), Positives = 9/53 (16%), Gaps = 7/53 (13%)
Query: 695 VIDPPP-----PPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
V P +G + EW + R
Sbjct: 15 VRALPIKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWKGHETLRDGDRHS 65
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 119 bits (301), Expect = 5e-31
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 22/207 (10%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 286
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 287 THTLTLIQCSTK--DKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKEREN 343
L ++ D+G Y N G S A+L V + +F + D+ V E
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 344 AVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL- 400
AV+E + + + W KDG + + + G L+I D G+Y C
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGT 185
Query: 401 ----PDQETSAELNVVELPPEISVPLQ 423
+ AEL V+E P
Sbjct: 186 NMVGERESEVAELTVLE-RPSFVKAAA 211
Score = 113 bits (284), Expect = 1e-28
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 13/198 (6%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS- 69
PP + + + TL + P P + WY GE ++ + S + + S
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 70 --YVSIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSIT 126
+ + + +EGVY VA+N GEA D ++V + + DV +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI---LRDDFRQNPSDVMVA 124
Query: 127 EGESAVLSVQV-GGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSV 183
GE AV+ Q G P P + W KDG + D +IT L + D G+Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR--GGKLMITYTRKSDAGKYVC 182
Query: 184 KVTNKEGTVESA-ANLNV 200
TN G ES A L V
Sbjct: 183 VGTNMVGERESEVAELTV 200
Score = 108 bits (272), Expect = 4e-27
Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 49/235 (20%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 164
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 165 THTLTLIQCSTK--DKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVS 221
L ++ D+G Y N G S A+L V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV--------------------- 107
Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK--D 278
+ + DV + GE AV+ Q G P P + W KDG + D
Sbjct: 108 ----------AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD 157
Query: 279 RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKK 332
+IT L + D G+Y TN G ES A L V + F+K
Sbjct: 158 ERITIR--GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV-LERPSFVKA 209
Score = 105 bits (264), Expect = 4e-26
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 20/206 (9%)
Query: 318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS------- 369
+L + ++ DL V + E A L + ++W+K G+ ++T
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 370 KKVTIEKKGTIRKLLIRNISVHDEGEYTC----SL-PDQETSAELNVVELPPEISVPLQD 424
+ + +++ S DEG Y C L A L V L + D
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120
Query: 425 VKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDA 482
V V+ E A E + +G + W KDG + + G KL+I DA
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDA 177
Query: 483 GEYSCRVGDT-GDKESK-ATLTVEAP 506
G+Y C + G++ES+ A LTV
Sbjct: 178 GKYVCVGTNMVGERESEVAELTVLER 203
Score = 89.5 bits (222), Expect = 2e-20
Identities = 46/260 (17%), Positives = 81/260 (31%), Gaps = 73/260 (28%)
Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN---- 460
L + PP I D+ VS+ E A+ + G ++WYK G+ + ++
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 461 -VTLSIDG--KKQKLIIFSAGLEDAGEYSC----RVGDTGDKESKATLTVEAPAVEFLTK 513
L G +++ D G Y C +G+ A+L V
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA--VSHDASLEVAILR------ 111
Query: 514 LPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEK 573
F + + V
Sbjct: 112 ---------------------------------------------DDFRQNPSDVMVAVG 126
Query: 574 GTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 632
+ + + P P+I W ++ PL ++ I G+ +I + ++DAG Y
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR----KSDAGKYVC 182
Query: 633 VATNELGSA-THGARVTVDV 651
V TN +G + A +TV
Sbjct: 183 VGTNMVGERESEVAELTVLE 202
Score = 71.8 bits (176), Expect = 2e-14
Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 49/192 (25%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----KREIFDGE 612
P +E + V + L K + P P+I W++ + + + + + G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 613 NIILELKEAD-SETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVH 670
L + S D G Y VA N LG A +H A + V +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL------------------ 110
Query: 671 HLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVR-FKALPPPKAEWT 729
P +V+V GE +E + + P P W
Sbjct: 111 ----------------------RDDFR-QNPSDVMVAVGEPAVMECQPPRGHPEPTISWK 147
Query: 730 VNGTVIVPSKRV 741
+G+ +
Sbjct: 148 KDGSPLDDKDER 159
Score = 59.8 bits (145), Expect = 3e-10
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+ F + V +E + PEP + W +G PL + DE + +
Sbjct: 109 ILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM 168
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI-PVKVNTGKPEKPSILEP 119
I +K + G Y V N GE + ++ + V E+PS ++
Sbjct: 169 -------ITYTRKSDAGKYVCVGTNMVGERESEVAELTVL----ERPSFVKA 209
Score = 34.0 bits (78), Expect = 0.13
Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 55/151 (36%)
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSK-------- 739
+ + P I P +++V KGE + + + P P EW G + K
Sbjct: 4 RQEDFPPRIVEHPS-DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 740 -------------------------------------------RVKGKA-EFIKKLDDLE 755
V +F + D+
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVM 122
Query: 756 VKERENAVLEVEVTSD--KADVKWFKNNSLI 784
V E AV+E + + + W K+ S +
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPL 153
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 115 bits (289), Expect = 1e-30
Identities = 35/97 (36%), Positives = 50/97 (51%)
Query: 323 DQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK 382
G F + L DLEV E A L ++S A VKW ++ K ++ ++G + +
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
L++RN+ D G Y+CS DQ TSA L V LP S
Sbjct: 65 LVVRNLRPQDSGRYSCSFGDQTTSATLTVTALPSGPS 101
Score = 97.4 bits (243), Expect = 2e-24
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P L+D++V A+ L+ A VKW + + +L +G +L
Sbjct: 6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
++ + +D+G YSC GD + ATLTV A
Sbjct: 66 VVRNLRPQDSGRYSCSFGDQ---TTSATLTVTALPSGP 100
Score = 81.6 bits (202), Expect = 6e-19
Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 164
+G E L D+ + EG +A L + +P V+W +++ + E
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
L + +D GRYS G ++A L V PS P
Sbjct: 62 MLELVVRNLRPQDSGRYSCSF----GDQTTSATLTV---------TALPSGP 100
Score = 80.1 bits (198), Expect = 2e-18
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 286
+G E L D+ + EG +A L + +P V+W +++ + E
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
L + +D GRYS G ++A L V
Sbjct: 62 MLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
Score = 67.0 bits (164), Expect = 9e-14
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G + F E ++ V E G L + + AP + W N L K +
Sbjct: 1 GSSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE 59
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSAT 642
G + L ++ + D+G Y ++ SAT
Sbjct: 60 GAMLELVVRNLRPQ-DSGRYSCSFGDQTTSAT 90
Score = 61.6 bits (150), Expect = 6e-12
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P F + K + E TL L +V P + W Y L+ D+ + M
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE-- 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+ +++++ ++ G Y+ ++ A + + T P PS
Sbjct: 65 --LVVRNLRPQDSGRYSCSFGDQTTSATLTV-----TALPSGPS 101
Score = 52.7 bits (127), Expect = 8e-09
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S G F + L DLEV E A L ++S A VKW N++++
Sbjct: 2 SSGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLR 49
Score = 28.8 bits (65), Expect = 2.3
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
++ V +G + ++ P +W V+ P +
Sbjct: 14 ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYS 55
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 118 bits (297), Expect = 2e-30
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT-- 287
G+ + P I+E D+ + + E A L+ +V G+P P +EW+KDG+ + + S +
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 288 -----HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKER 341
T+ +D G Y N+ G S A+L + + +F + D V +
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKG 123
Query: 342 ENAVLE-VEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISVHDEG 394
E A+LE + + W KDG + K ++ +R LLI N+ DEG
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 395 EYTCSL-----PDQETSAELNVVELPPEI 418
Y C + + A+L +V++
Sbjct: 184 NYKCIAQNLVGTRESSYAKL-IVQVKAAA 211
Score = 116 bits (293), Expect = 6e-30
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 23/218 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + + ++N TL ++ PEP + W+ +GEP+ ++ Q +
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK-MDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
T++ K+++ G Y VAKNR G+A +++ + + D + +GE+
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD---FRVEPKDTRVAKGET 125
Query: 131 AVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKN--------THTLTLIQCSTKDKGRY 181
A+L G P P + W KDG + D + S L + D+G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 182 SVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPY 218
N GT ES+ A L V + + +
Sbjct: 186 KCIAQNLVGTRESSYAKLIV---------QVKAAAHHH 214
Score = 115 bits (290), Expect = 2e-29
Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 50/243 (20%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT-- 165
G+ + P I+E D+ + + E A L+ +V G+P P +EW+KDG+ + + S +
Sbjct: 4 AGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 166 -----HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYV 219
T+ +D G Y N+ G S A+L +
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI------------------- 104
Query: 220 VSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKD 278
+ D + +GE+A+L G P P + W KDG + D
Sbjct: 105 ------------AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDD 152
Query: 279 RQITSEKN--------THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEF 329
+ S L + D+G Y N GT ES+ A L V Q KA
Sbjct: 153 LKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV-QVKAAA 211
Query: 330 IKK 332
Sbjct: 212 HHH 214
Score = 108 bits (270), Expect = 1e-26
Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 19/210 (9%)
Query: 318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT----SKKV 372
A L I+ DL VK+ E A L +V + ++WFKDG+ + T S +V
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 373 TIEKKGTIRKLLIRNISVHDEGEYTC-----SLPDQETSAELNVVELPPEISVPLQDVKV 427
+ ++ D GEY C A L + L + V +D +V
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRV 120
Query: 428 SRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ-----KLIIFSAGLE 480
++ E A E KG + W KDG + + ++ + + L+I +
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 481 DAGEYSCRVG-DTGDKESK-ATLTVEAPAV 508
D G Y C G +ES A L V+ A
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210
Score = 89.9 bits (223), Expect = 1e-20
Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 72/277 (25%)
Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN---- 460
A L P I D+ V ++E A+ ++ G ++W+KDG+ ++ +E
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHR 59
Query: 461 VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLV 520
V + +D GEY C +++ V A
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVA------KNRVGQAVSRHAS------------ 101
Query: 521 PHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM- 579
+Q+ L F ++ V + T L
Sbjct: 102 ----------------LQIAVL---------------RDDFRVEPKDTRVAKGETALLEC 130
Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE---LKEAD-SETDAGDYKVVAT 635
K P P+++W ++ PL I++ L ++ D G+YK +A
Sbjct: 131 GPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 636 NELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHH 671
N +G+ + A++ V V + + +H HH
Sbjct: 191 NLVGTRESSYAKLIVQV----KAAAH------HHHHH 217
Score = 73.0 bits (179), Expect = 1e-14
Identities = 45/195 (23%), Positives = 67/195 (34%), Gaps = 46/195 (23%)
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF- 609
PL Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 610 --DGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDR 666
DG + E D G+Y VA N +G A + A + + V R
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI---AVLRDDFRV----- 113
Query: 667 NHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE-VRFKALPPPK 725
P + V KGE +E K +P P
Sbjct: 114 ---------------------------------EPKDTRVAKGETALLECGPPKGIPEPT 140
Query: 726 AEWTVNGTVIVPSKR 740
W +G + K
Sbjct: 141 LIWIKDGVPLDDLKA 155
Score = 56.8 bits (137), Expect = 4e-09
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLE-VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
+ F + K + LE +PEP L+W +G PL + + F S +
Sbjct: 107 LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI 166
Query: 70 YVSIV-TIKSIKKREEGVYTVVAKNREGEAK---MDIPVKVNTGKPEKP 114
I +++ +EG Y +A+N G + + V+V
Sbjct: 167 VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 31.8 bits (72), Expect = 0.70
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 52/148 (35%)
Query: 689 PVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK------ 742
+P I P +++VKK E + + + P P EW +G + +++
Sbjct: 5 GQYQSPRIIEHPT-DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 743 -----------------------------GKA--------------EFIKKLDDLEVKER 759
G+A +F + D V +
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKG 123
Query: 760 ENAVLE-VEVTSD-KADVKWFKNNSLIK 785
E A+LE + + W K+ +
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLD 151
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 117 bits (294), Expect = 2e-30
Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 46/221 (20%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTL 170
+P I+ + L + + W K+G + + + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEYRI 60
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNT 230
+ +D G Y V + ++ A + V
Sbjct: 61 NKPRAEDSGEYHC-VYHFVSAPKANATIEVK----------------------------- 90
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR--------QIT 282
P I + EG+ A++ + G P P+ W K + + I
Sbjct: 91 ---AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII 147
Query: 283 SEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
+++N L ++ D G Y TN G+ + L V
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 114 bits (288), Expect = 2e-29
Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 25/200 (12%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP--DLLWYYNGEPLQETDEVVFSDQSDMHS 69
P + + + VTL+ L + W NG L T + ++
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK---------NA 53
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
I + + G Y V + K + ++V P I + EG+
Sbjct: 54 SNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK----AAPDITGHKRSENKNEGQ 108
Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDR--------QITSEKNTHTLTLIQCSTK-DKGR 180
A++ + G P P+ W K + + I +++N L ++ D G
Sbjct: 109 DAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168
Query: 181 YSVKVTNKEGTVESAANLNV 200
Y TN G+ + L V
Sbjct: 169 YECNATNSIGSASVSTVLRV 188
Score = 113 bits (283), Expect = 7e-29
Identities = 38/246 (15%), Positives = 64/246 (26%), Gaps = 67/246 (27%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYKDGKEIAFSENVTLSIDGKKQ 470
P I + + + + LT + W K+G E+ + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGVELTATRK-----NASNM 56
Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
+ I ED+GEY C ++ AT+ V+A
Sbjct: 57 EYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAA------------------------ 92
Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
P + E + K P P
Sbjct: 93 ----------------------------PDITGHKRSENKNEGQDAMMYCKSVGYPHPEW 124
Query: 591 VWFRNNKPLLSSPKKRE-----IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
+W + + I L + D G+Y+ ATN +GSA+
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 646 RVTVDV 651
+ V V
Sbjct: 185 VLRVRV 190
Score = 109 bits (275), Expect = 8e-28
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTL 292
+P I+ + L + + W K+G + + + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--KNASNMEYRI 60
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS 352
+ +D G Y V + ++ A + V + + E ++A++ +
Sbjct: 61 NKPRAEDSGEYHC-VYHFVSAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKSVG 118
Query: 353 D-KADVKWFKDGQEI-----KTSKKVTIEKKGTIRKLLIRNISV-HDEGEYTC----SLP 401
+ W K + +S + I K +L I N+ + D GEY C S+
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 402 DQETSAELNV 411
S L V
Sbjct: 179 SASVSTVLRV 188
Score = 99 bits (249), Expect = 3e-24
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 22/190 (11%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKA---DVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
+ + + L+ +TS W K+G E+ ++K + + I
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-----ASNMEYRI 60
Query: 386 RNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG 442
D GEY C + + +A + V P+I+ + + + A + + G
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKANATIEVKA-APDITGHKRSENKNEGQDAMMYCK-SVG 118
Query: 443 DAL--VKWYKDGKEIAFSEN------VTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTG 493
W K + + ++ + + I+ ED GEY C G
Sbjct: 119 YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 494 DKESKATLTV 503
L V
Sbjct: 179 SASVSTVLRV 188
Score = 57.9 bits (140), Expect = 1e-09
Identities = 25/185 (13%), Positives = 49/185 (26%), Gaps = 51/185 (27%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENII 615
P + E + L + +S W +N L ++ K + N+
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNME 57
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNI 675
+ + +E D+G+Y V + + + A + V
Sbjct: 58 YRINKPRAE-DSGEYHCVY-HFVSAPKANATIEVKA------------------------ 91
Query: 676 DSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
AP I E +G+D + + P P+ W +
Sbjct: 92 -----------------APDITGHKRSEN-KNEGQDAMMYCKSVGYPHPEWMWRKKENGV 133
Query: 736 VPSKR 740
Sbjct: 134 FEEIS 138
Score = 57.6 bits (139), Expect = 1e-09
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P + + E + + + V P P+ +W + E ++
Sbjct: 91 AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150
Query: 71 -VSIVTIKSIKKRE-EGVYTVVAKNREG--EAKMDIPVKV 106
+ + I +++ E G Y A N G + V+V
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
Score = 35.6 bits (82), Expect = 0.030
Identities = 12/133 (9%), Positives = 31/133 (23%), Gaps = 41/133 (30%)
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAE--WTVNGTVIVPSKR--------- 740
P I ++ + ++ + WT NG + +++
Sbjct: 2 NEPRIVTSEEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRI 60
Query: 741 ----------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSD- 771
VK + E ++A++ +
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP 120
Query: 772 KADVKWFKNNSLI 784
+ W K + +
Sbjct: 121 HPEWMWRKKENGV 133
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 121 bits (305), Expect = 4e-30
Identities = 65/422 (15%), Positives = 129/422 (30%), Gaps = 90/422 (21%)
Query: 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPL-------------QETDEVVFSDQSDMH 68
V ++ V L W + + + ++ S +S
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ IK++K + Y ++++ E ++ + + D + +G
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL-LVFGL----TANS-------DTHLLQG 111
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
+S L+++ SP V+ + + TL++ Q +D G ++ V
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 164
Query: 189 EGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSIT 248
+ VE ++ V + + E + ++ + PL
Sbjct: 165 QKKVEFKIDIVVLAF--------QKASSIVYKKEGEQVEFSF----------PLAFTVEK 206
Query: 249 EGESAVLSVQVGGEPSPKV----EWYKDGKLIK-----DRQITSEKNTHTLTLIQCSTK- 298
S L Q S K + +K + +K LTL Q +
Sbjct: 207 LTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQY 266
Query: 299 -DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV---TSDK 354
G ++ + K G + NL V + + + L EV TS K
Sbjct: 267 AGSGNLTLALEAKTGKLHQEVNLVV-------------MRATQLQK-NLTCEVWGPTSPK 312
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPD-QETSAELNVVE 413
+ + +E K SK + + + G + C L D + E N+
Sbjct: 313 LMLSLKLENKEAKVSK-----------REKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
Query: 414 LP 415
LP
Sbjct: 362 LP 363
Score = 111 bits (277), Expect = 2e-26
Identities = 53/423 (12%), Positives = 123/423 (29%), Gaps = 107/423 (25%)
Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 162
V +G++ L+ + S + W ++ R+ +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+ L + +D Y +V +++ V+
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ----------------------------- 94
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
L + D + +G+S L+++ SP V+
Sbjct: 95 LLVFGL----TANS-------DTHLLQGQSLTLTLESPPGSSPSVQCRSPRG-------K 136
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD--QGKAEFIKKLDDLEVKE 340
+ + TL++ Q +D G ++ V + VE ++ V Q + + K + +V+
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEF 196
Query: 341 RENAVLEVEVTSDKADVKWFKDG-------------------QEIKTSKKVTIEKKGTIR 381
VE + ++ W + + + K+ + KK +
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256
Query: 382 -KLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT 440
L G T +L + V + + +++ S ++ L+
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLS 316
Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKAT 500
+ KE S+ + +AG + C + D+G ++
Sbjct: 317 -------LKLENKEAKVSK-----------REKAVWVLNPEAGMWQCLLSDSGQVLLESN 358
Query: 501 LTV 503
+ V
Sbjct: 359 IKV 361
Score = 82.5 bits (203), Expect = 5e-17
Identities = 54/453 (11%), Positives = 116/453 (25%), Gaps = 143/453 (31%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 284
V +G++ L+ + S + W ++ R+ +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ L + +D Y +V +++ V+ + D + + ++
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL---------LVFGLTANSDTHLLQGQSL 114
Query: 345 VLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----S 399
L +E V+ + K L + + + D G +TC +
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQN 164
Query: 400 LPDQETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAF 457
E ++ V+ I + +V +F +E G + W + +
Sbjct: 165 QKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS- 223
Query: 458 SENVTLSIDGKKQ---------------------KLIIFSAGLEDAGEYSCRVGDTGDKE 496
+T + K+ L +G
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL----------- 272
Query: 497 SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPG 556
TL +EA G +V L NL TC + P
Sbjct: 273 ---TLALEAKT----------------GKLHQEVNLVVMRATQLQKNL----TCEVWGP- 308
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
SP + NK S +++ +
Sbjct: 309 ---------------------------TSPKLMLSLKLENKEAKVSKREK--------AV 333
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ +AG ++ + ++ G + + V
Sbjct: 334 WV----LNPEAGMWQCLLSDS-GQVLLESNIKV 361
Score = 69.1 bits (168), Expect = 1e-12
Identities = 40/332 (12%), Positives = 84/332 (25%), Gaps = 105/332 (31%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK 80
+ + +TL + P + + +++ ++
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------KTLSVSQLE 150
Query: 81 KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 140
++ G +T + + + I + V + V EGE S +
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK-------ASSIVYKKEGEQVEFSFPLAFT 203
Query: 141 -----PSPKVEWYKDGKLIKDRQIT---------------------SEKNTHTLTLIQCS 174
S ++ W + IT +K LTL Q
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263
Query: 175 TK--DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGK 232
+ G ++ + K G + NL V ++
Sbjct: 264 PQYAGSGNLTLALEAKTGKLHQEVNLVV-------------------------MRA---- 294
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTL 290
L+ +V G SPK+ + K K +
Sbjct: 295 ----------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEA--------KVSKRE 330
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + G + +++ G V +N+ V
Sbjct: 331 KAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
Score = 33.6 bits (76), Expect = 0.21
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 24/107 (22%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----------------KREIFDG 611
K+ T+ L + W +N+ + + +R ++D
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
N L +K D+ Y + V + V +
Sbjct: 65 GNFPLIIKNL-KIEDSDTYICEVED------QKEEVQLLVFGLTANS 104
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 112 bits (282), Expect = 1e-29
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
F + L E E A L+ E+ S A V+W K + ++ + ++++ GT +L I +
Sbjct: 10 RFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHD 68
Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDV 425
+SV D GEY+C + TSA L V LP +
Sbjct: 69 LSVADAGEYSCMCGQERTSATLTVRALPARFTEGSGPS 106
Score = 105 bits (263), Expect = 4e-27
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P + L+ + S A+ + EL+K A V+W K + + +L DG + +L
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCELSK-VAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVT 518
I + DAGEYSC G + + ATLTV A F +
Sbjct: 65 QIHDLSVADAGEYSCMC---GQERTSATLTVRALPARFTEGSGPSS 107
Score = 82.4 bits (204), Expect = 3e-19
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 286
+G + L +EG +A L ++ VEW K + ++D + +
Sbjct: 3 SGSSGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGT 60
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD 335
L + S D G YS G ++A L V A F +
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGP 105
Score = 81.7 bits (202), Expect = 8e-19
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 164
+G + L +EG +A L ++ VEW K + ++D + +
Sbjct: 3 SGSSGPARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGT 60
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
L + S D G YS G ++A L V + ++ + PS
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106
Score = 67.4 bits (165), Expect = 8e-14
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G + F + + K E T L + + S + W + + L + D
Sbjct: 1 GSSGSSGPARFTQDLKTKEASEGATATL--QCELSKVAPVEWKKGPETLRDGGRYSLKQD 58
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSAT 642
G L++ + DAG+Y + E SAT
Sbjct: 59 GTRCELQIHDLSVA-DAGEYSCMCGQERTSAT 89
Score = 64.3 bits (157), Expect = 8e-13
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P F++ K A E + TL+ L + W E L++
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCE-- 63
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
+ I + + G Y+ + A + + + E S
Sbjct: 64 --LQIHDLSVADAGEYSCMCGQERTSATLTV-------RALPARFTEGSGPSS 107
Score = 47.0 bits (112), Expect = 1e-06
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
F + L E E A L+ E+ S A V+W K ++
Sbjct: 10 RFTQDLKTKEASEGATATLQCEL-SKVAPVEWKKGPETLR 48
Score = 28.9 bits (65), Expect = 2.5
Identities = 4/43 (9%), Positives = 8/43 (18%), Gaps = 2/43 (4%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+G ++ EW + R
Sbjct: 14 DLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYS 54
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 122 bits (306), Expect = 3e-29
Identities = 69/583 (11%), Positives = 154/583 (26%), Gaps = 109/583 (18%)
Query: 20 KPVYAEENSEVTLE--VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY---VSI- 73
+ V + E + V++ +V ++ ++ S+ Y ++
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 74 ---------VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
V I + + + G Y + V+ + P +L +
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSR----GLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 125 ITEGESAVLSVQVGGEPSPKVE-WYKDGKLIKDRQITSEKNTH----------------- 166
+ G + ++ E + K + YK L I S +
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQL 183
Query: 167 --TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
++ + Q D G+Y + + + + A+L V P P
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV----------LKPEPELVYEDLRG 233
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGK--LIKDRQIT 282
++ + + A + + V GK + +I
Sbjct: 234 SVTFHC-------------ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280
Query: 283 ----SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLD---D 335
+ + ++ + +D GRY + E + E
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTV 340
Query: 336 LEVKERENAVLEVEVTSD-KADVK-WFKDGQEIKTSKKVTIEKKGTIRK----------- 382
++ + + +K W + ++ +G ++
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 383 -------LLIRNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVPLQDVKVSRDEK 432
+++ ++ D G Y C T+ E+ ++E P + VP +V E
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP-GNVTAVLGET 459
Query: 433 ASFEIELTKGD-----ALVKWYKDGKEIAFSEN-------VTLSIDGKKQKLIIFSAGLE 480
KW G + S++ V + + L +
Sbjct: 460 LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519
Query: 481 DAGEYSCRVGD--TGDKESKATLTVEAPAVEFLTKLPSVTLVP 521
D G Y C V + + + VE +
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADA 562
Score = 89.7 bits (221), Expect = 1e-18
Identities = 78/634 (12%), Positives = 146/634 (23%), Gaps = 169/634 (26%)
Query: 113 KPSILEPLHDVSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKDRQITS-------- 161
K I P +V+ EG S ++ + W + G + S
Sbjct: 1 KSPIFGP-EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSK 59
Query: 162 -----------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE 210
E T + + Q S D GRY +
Sbjct: 60 YAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRG------------------- 100
Query: 211 TPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE-W 269
+ V+ + P +L ++ G + ++ E + K +
Sbjct: 101 -------------LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSL 147
Query: 270 YKDGKLIKDRQITSEKNTH-------------------TLTLIQCSTKDKGRYSVKVTNK 310
YK L I S + ++ + Q D G+Y + +
Sbjct: 148 YKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDD 207
Query: 311 EGTVESAANLNVDQGKAEFIKKLD--------DLEVKERENAVLEVEVTSDKA-DVKWFK 361
+ + A+L V + + E + + L + A +S + DV
Sbjct: 208 SNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNT 267
Query: 362 DGQEIKTSK-KVTIEKKGT--IRKLLIRNISVHDEGEYTC-------SLPDQETSAELNV 411
G+ + ++ + + ++I + D G Y C A
Sbjct: 268 LGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLF 327
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVK--WYKDGKEIAFSENVTLSIDGKK 469
V I VK + + ++ W + + +G
Sbjct: 328 VNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWV 387
Query: 470 QK------------------LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFL 511
+ +I+ DAG Y C + + + L
Sbjct: 388 KAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEP-NL 446
Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
+VT
Sbjct: 447 KVPGNVT-AVLGETLKVPCHFPC------------------------------------- 468
Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE-----IFDGENIILELKEAD-SET 625
K + W L S + D + ++ L +
Sbjct: 469 ---------KFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519
Query: 626 DAGDYK-VVATNELGSATHGARVTVDVEKVGRPP 658
D G Y V T V V+ K
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSR 553
Score = 85.8 bits (211), Expect = 1e-17
Identities = 45/376 (11%), Positives = 100/376 (26%), Gaps = 74/376 (19%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK 80
+ E + R + D++ G+ + + V I ++
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI-LLNPQDKDGSFSVVITGLR 298
Query: 81 KREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 140
K + G Y A + + E+ +I V G S + +
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRK 358
Query: 141 PSPKVEWYKDGKLIKDRQITSEKNTH----------------------TLTLIQCSTKDK 178
S ++++ + ++ + ++ T+ L Q +++D
Sbjct: 359 ESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDA 418
Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
G Y + + + + EP
Sbjct: 419 GFYWCLTNG-DTLWRTTVEIKIIEGEPNLKVPGN-------------------------- 451
Query: 239 LEPLHDVSITEGESAVLSVQVG----GEPSPKVEWYKDGKLIKDRQITSE---------- 284
V+ GE+ + +W G Q
Sbjct: 452 ------VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505
Query: 285 KNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN 343
+LTL + D+G Y V +A + V++ KA + D+ + + +
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSR---DVSLAKADA 562
Query: 344 AVLEVEVTSDKADVKW 359
A E + S +++
Sbjct: 563 APDEKVLDSGFREIEN 578
Score = 65.8 bits (159), Expect = 3e-11
Identities = 38/260 (14%), Positives = 75/260 (28%), Gaps = 36/260 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY--NGEPLQETDEVVFSDQSDMHS 69
T + V S V + + ++ G +V S+
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390
Query: 70 Y---VSI----------VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
Y +S+ V + + R+ G Y + + + +K+ G+P
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD-TLWRTTVEIKIIEGEP----N 445
Query: 117 LEPLHDVSITEGESAVLSVQVG----GEPSPKVEWYKDGKLIKDRQITSE---------- 162
L+ +V+ GE+ + +W G Q
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505
Query: 163 KNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
+LTL + D+G Y V +A + V+ + S++ +
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPD 565
Query: 222 ELDTLQVNTGKPEKPSILEP 241
E L + E +I +P
Sbjct: 566 E-KVLDSGFREIENKAIQDP 584
Score = 31.9 bits (71), Expect = 1.0
Identities = 32/269 (11%), Positives = 54/269 (20%), Gaps = 70/269 (26%)
Query: 472 LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
+ I +D+G Y C +G S + L T V T
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT-VDLGRTVTINCP 135
Query: 532 LSS-PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
+ + K L L I+ G IRL
Sbjct: 136 FKTENAQKRKSL-------Y-KQIGLYPVLVIDSSGYVNPNYTGRIRLD----------- 176
Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
+ +F + + + +DAG Y A ++ S A + V
Sbjct: 177 ----------IQGTGQLLF-----SVVINQL-RLSDAGQYLCQAGDDSNSNKKNADLQV- 219
Query: 651 VEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGE 710
+ + V +
Sbjct: 220 ------------------LKPEPELVYEDLRGSVTFHCALGPEV--------------AN 247
Query: 711 DLKIEVRFKALPPPKAEWTVNGTVIVPSK 739
K R + G +
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 120 bits (301), Expect = 4e-29
Identities = 61/475 (12%), Positives = 129/475 (27%), Gaps = 72/475 (15%)
Query: 52 PLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
P+ E + + + + +E+ + +G++ + V P
Sbjct: 28 PMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYW-TP 86
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
E+ + G++ L QV G + V + K +K E T
Sbjct: 87 ERVEL--APLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT 144
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
T++ +S + N ++ P +PP
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP------------ 192
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE---PSPKVEWYKDGKLIKDRQITSEK 285
+ + + + + G +V + +
Sbjct: 193 -----------QLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241
Query: 286 NTHTLTLIQCSTKDKGRYSV--KVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN 343
+ + + +D+G + V + E+ + + L EV E
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-YSFPAPNVILTKPEVSEGTE 300
Query: 344 AVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS---- 399
++ E +A V V + G +LL++ + ++CS
Sbjct: 301 VTVKCEAHP-RAKVTLN----------GVPAQPLGPRAQLLLKATPEDNGRSFSCSATLE 349
Query: 400 ----LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIE-LTKGD--ALVKWYKDG 452
L + + EL V+ P + + E + G+ +K KDG
Sbjct: 350 VAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 408
Query: 453 KEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
+ + G Y CR G+ + T+ V +P
Sbjct: 409 TFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 120 bits (301), Expect = 5e-29
Identities = 65/553 (11%), Positives = 119/553 (21%), Gaps = 138/553 (24%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
V + G S +++ + + L K + N L + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIET--PLPKKELLLPGNNRKVYELSNVQ--EDSQP 63
Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
+G + L V PE+ +
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYW-----------------------------TPERVEL--A 92
Query: 242 LHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
G++ L QV G + V + K +K E T T++
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH 152
Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKL--------DDLEVKERENAVLEVEV 350
+S + N L ++ + +
Sbjct: 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL 212
Query: 351 TSD----KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPD 402
+A V Q + + + +++ DEG L +
Sbjct: 213 DGLFPVSEAQVHLALGDQRLNPT---VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN 269
Query: 403 QETSAELNV-VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENV 461
Q V + P +V L +VS + + + E A V
Sbjct: 270 QSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCE-AHPRAKVTLNG-VPAQPLGPRA 327
Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCRV-----GDTGDKESKATLTVEAPAVEFLTKLPS 516
L + + ++ +SC G K L V
Sbjct: 328 QLLLKATPE---------DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR-------- 370
Query: 517 VTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTI 576
CP T E
Sbjct: 371 ----------------------------LDERDCP--------------GNWTWPENSQQ 388
Query: 577 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 636
M + +P P + ++ L + + + G Y A +
Sbjct: 389 TPMCQAWGNPLPELKCLKDGTFPLPIGESVTV--------------TRDLEGTYLCRARS 434
Query: 637 ELGSATHGARVTV 649
G T V V
Sbjct: 435 TQGEVTREVTVNV 447
Score = 93.8 bits (232), Expect = 3e-20
Identities = 58/518 (11%), Positives = 114/518 (22%), Gaps = 134/518 (25%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
V + G S +++ + + L K + N L + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIET--PLPKKELLLPGNNRKVYELSNVQ--EDSQP 63
Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS----DKADVKW 359
+G + L V +N L +V V
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123
Query: 360 FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC------------SLPDQETSA 407
+ +E+K + + H ++C +
Sbjct: 124 LRGEKELKRE---PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPY 180
Query: 408 ELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG----DALVKWYKDGKEIAFSENVTL 463
+L LP + + D + + L +A V + + + VT
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTY 238
Query: 464 SIDGKKQKLII-FSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVP 521
D K + +A E +C V +E+ T+T+ +
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF--------------- 283
Query: 522 HLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
P + V E + + +
Sbjct: 284 -------------------------------------PAPNVILTKPEVSEGTEVTVKCE 306
Query: 582 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 641
++ G L LK A E + + AT E+
Sbjct: 307 AHPRAKVTLNGVPAQPL------------GPRAQLLLK-ATPEDNGRSFSCSATLEVAGQ 353
Query: 642 THGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPP 701
T ++ V P +D
Sbjct: 354 LIHKNQTRELR-------------------------------------VLYGPRLDERDC 376
Query: 702 PEVL-VKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
P + + P P+ + +GT +P
Sbjct: 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI 414
Score = 89.9 bits (222), Expect = 4e-19
Identities = 43/316 (13%), Positives = 79/316 (25%), Gaps = 61/316 (19%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVA---VPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
P T + P E +++ T+ L V E + + L + +
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN-------PTVTYGN 240
Query: 69 SYVSIVTIKSIKKREEGVYTVV--AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
S S+ +EG + + V + P+ L ++
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY----SFPAPNVILTKPEVS 296
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
EG + + + L Q L L + +S T
Sbjct: 297 EGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---------LLLKATPEDNGRSFSCSAT 347
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
+ N L+V P P + +
Sbjct: 348 LEVAGQLIHKNQTR------------------------ELRV-LYGPRLDERDCPG-NWT 381
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVK 306
E Q G P P+++ KDG + + +G Y +
Sbjct: 382 WPENSQQTPMCQAWGNPLPELKCLKDGTF----------PLPIGESVTVTRDLEGTYLCR 431
Query: 307 VTNKEGTVESAANLNV 322
+ +G V +NV
Sbjct: 432 ARSTQGEVTREVTVNV 447
Score = 47.2 bits (111), Expect = 1e-05
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 12 PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
P ++ P ENS+ T + P P+L +G E V +
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDL--- 424
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
EG Y A++ +GE ++ V V
Sbjct: 425 --------------EGTYLCRARSTQGEVTREVTVNVL 448
Score = 36.4 bits (83), Expect = 0.038
Identities = 29/209 (13%), Positives = 51/209 (24%), Gaps = 17/209 (8%)
Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
++V R K L P E + +L + ++ +L
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEPAEVTTTVL----VRRDHHGANFSCRTELDLRPQGLEL 172
Query: 646 RVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQST-EVDVEKPVETAPVI----DPPP 700
+ + + + +D+ +D PV A V D
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 701 PPEVLVKKGED-LKIEVRFKALPPPKAEWTVNGTVIVPSK------RVKGKAEFIKKLDD 753
P V K V A T + S+ + L
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK 292
Query: 754 LEVKERENAVLEVEVTSDKADVKWFKNNS 782
EV E ++ E +A V +
Sbjct: 293 PEVSEGTEVTVKCEAHP-RAKVTLNGVPA 320
Score = 29.5 bits (65), Expect = 5.5
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 12/86 (13%)
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVW--FRNNKPLLSSPKKREIFDGENIILELKEADS 623
+ + G++ + + K LL R++++ N+
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNV--------- 57
Query: 624 ETDAGDYKVVATNELGSATHGARVTV 649
+ + G +T +TV
Sbjct: 58 -QEDSQPMCYSNCPDGQSTAKTFLTV 82
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 112 bits (282), Expect = 9e-29
Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 46/217 (21%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTL 168
++ +++++G+ L+ V G P ++W KDG ++++ ++ + L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
+L D GRY +V + T S L V+
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE-------------------------- 96
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKN 286
P D+++ LS + G P P + W++ I
Sbjct: 97 ------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI------GGPA 144
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVES-AANLNV 322
L +S + N +G S A +++
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Score = 111 bits (278), Expect = 3e-28
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 18/171 (10%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD-----RQITSEKNTHTL 290
++ +++++G+ L+ V G P ++W KDG ++++ ++ + L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLEVE 349
+L D GRY +V + T S L V +G F + DL V L E
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTV-EGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 350 VTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+ W++ +I ++ V ++C
Sbjct: 122 AVGPPEPVTIVWWRGTTKIGGP---------APSPSVLNVTGVTQSTMFSC 163
Score = 106 bits (267), Expect = 9e-27
Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 15/192 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ + V L + + EPD+ W +G +Q D++ ++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ--HWI 59
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVSITEGES 130
+++KS+++ + G Y ++ + + V P D+++
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE----GVPFFTVEPKDLAVPPNAP 115
Query: 131 AVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
LS + G P P + W++ I L +S + N +
Sbjct: 116 FQLSCEAVGPPEPVTIVWWRGTTKI------GGPAPSPSVLNVTGVTQSTMFSCEAHNLK 169
Query: 190 GTVES-AANLNV 200
G S A +++
Sbjct: 170 GLASSRTATVHL 181
Score = 96.8 bits (241), Expect = 3e-23
Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 22/189 (11%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI--EKKGTIRKLL 384
+ + L V + + L V + D++W KDG ++ ++ I ++ I L
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 385 IRNISVHDEGEYTC---SLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKASFEIELT 440
++++ D G Y C + E S + + VE P +V +D+ V + E
Sbjct: 64 LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAV 123
Query: 441 KGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKE 496
G + W++ +I ++ G+ + +SC G
Sbjct: 124 -GPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMFSCEAHNLKGLAS 173
Query: 497 SK-ATLTVE 504
S+ AT+ ++
Sbjct: 174 SRTATVHLQ 182
Score = 86.0 bits (213), Expect = 1e-19
Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 71/245 (28%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQK- 471
++ + VS+ + + G ++W KDG + + + + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 472 -LIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
L + S DAG Y C+V D + S+ LTVE
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGV---------------------- 98
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
P F ++ V +L + P P
Sbjct: 99 ------------------------------PFFTVEPKDLAVPPNAPFQLSCEAVGPPEP 128
Query: 589 -SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647
+IVW+R + + + + T + + A N G A+
Sbjct: 129 VTIVWWRGTTKIGGPAPSPSVLNVTGV----------TQSTMFSCEAHNLKGLASSRT-A 177
Query: 648 TVDVE 652
TV ++
Sbjct: 178 TVHLQ 182
Score = 62.9 bits (153), Expect = 1e-11
Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 48/186 (25%)
Query: 558 APL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
A L + + TV + ++L V+ P I W ++ + + + ++ I
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 616 -LELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVHHLD 673
L LK +DAG Y + + + +T
Sbjct: 61 FLSLKSV-ERSDAGRYWCQVEDGGETEISQPVWLT------------------------- 94
Query: 674 NIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNG 732
VE P P ++ V ++ P P W
Sbjct: 95 ----------------VEGVPFFT-VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGT 137
Query: 733 TVIVPS 738
T I
Sbjct: 138 TKIGGP 143
Score = 37.5 bits (87), Expect = 0.006
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 48/133 (36%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR------------------- 740
P ++ V +G+ +K+ + + P +W +G V+ +
Sbjct: 8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 67
Query: 741 ---------------------------VKGKAEFIKKLDDLEVKERENAVLEVEVTSDK- 772
V+G F + DL V L E
Sbjct: 68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 773 -ADVKWFKNNSLI 784
+ W++ + I
Sbjct: 128 PVTIVWWRGTTKI 140
Score = 29.0 bits (65), Expect = 3.9
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ + L V + + L V + D++W K+ ++++
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ 44
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 116 bits (292), Expect = 1e-28
Identities = 55/336 (16%), Positives = 94/336 (27%), Gaps = 64/336 (19%)
Query: 239 LEPLHDVSITEGESAVL-----------SVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
L+ + + + E E A + + + WY + + + +
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 288 --------HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---DQGKAEFIKKLDDL 336
L D G Y+ + N + A L V D +K
Sbjct: 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 337 EVKERENAVLEVEVTSDKAD------VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISV 390
E + + W+ +I+ V E L +
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM----NLSFLIALI 186
Query: 391 HDEGEYTCSLPDQE--------TSAELNVVE-----LPPEISVPLQDVKVSRDEKASFEI 437
+ G YTC + E + + VV +PP I P V ++ I
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246
Query: 438 E-------LTKGDALVKWYKDGKEIA-------FSENVTLSIDGKK---QKLIIFSAGLE 480
L V W DGK+ +E+++ S + Q L I E
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE 306
Query: 481 D-AGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKL 514
D Y C G+ A + + PA + +L
Sbjct: 307 DLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVEL 342
Score = 108 bits (270), Expect = 1e-25
Identities = 49/356 (13%), Positives = 104/356 (29%), Gaps = 64/356 (17%)
Query: 17 KKTKPVYAEENSEVTLEVRLVAV-----------PEPDLLWYYNGEPLQETDEVVFSDQS 65
+ + E+ ++ L L+WY+ + + + F
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 66 D-MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVS 124
+ + ++ + + G YT + +N +K+ P++V S ++
Sbjct: 72 NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131
Query: 125 ITEGESAVL-----SVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 179
E + P + WY I++ + L+ + + G
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM-NLSFLIALISNNG 190
Query: 180 RYSVKVT----NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEK 235
Y+ VT + + + V + PP + S D +
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKV-------VGSPKNAVPPVIHSPNDHV--------- 234
Query: 236 PSILEPLHDVSITEGESAVLSVQV----GGEPSPKVEWYKDGKLIKD------------- 278
GE ++ V + +V W DGK D
Sbjct: 235 --------VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISH 286
Query: 279 RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNVDQGKAEFIKKL 333
+ E T L++ + +++D R Y + +G V AA + + +L
Sbjct: 287 SRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTVEL 342
Score = 90.3 bits (223), Expect = 1e-19
Identities = 48/361 (13%), Positives = 89/361 (24%), Gaps = 81/361 (22%)
Query: 330 IKKLDDLEVKERENAVLEVEV------------TSDKADVKWFKDGQEIKTSKKVTIEKK 377
+ + ++V E E A ++ + S + W+ Q+ + +
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 378 GTI-----RKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPL---QDV 425
L R ++D G YTC + + + L VV+ + P+
Sbjct: 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 426 KVSRDEKASFEIELTKGDAL------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGL 479
G + WY +I NV L A +
Sbjct: 131 LYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE----GMNLSFLIALI 186
Query: 480 EDAGEYSCRVGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQ 538
+ G Y+C V + T T+ V + ++ E
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE--- 243
Query: 539 VKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP 598
++ C + + W + K
Sbjct: 244 -------LLIPC--------------------------TVYFSFLMDSRNEVWWTIDGKK 270
Query: 599 LLSSPKKREIFDGENI----------ILELKEADSETDAGDYKVVATNELGSATHGARVT 648
I + + IL +K+ SE Y A + G A+V
Sbjct: 271 PDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330
Query: 649 V 649
Sbjct: 331 Q 331
Score = 77.6 bits (190), Expect = 2e-15
Identities = 58/352 (16%), Positives = 96/352 (27%), Gaps = 90/352 (25%)
Query: 393 EGEYTCSLPDQETSAELNVVELPP-EISVPLQDVKVSRDEKASFEIELTKGDALVKWYKD 451
E C +T ++ V E P I PL + + + + LT + WY
Sbjct: 1 EPSERCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLT-----LIWYWT 55
Query: 452 GKEIAFSENVTLS-----IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
++ E + I +K L L D G Y+C + T + L V
Sbjct: 56 RQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ 115
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
F + + ++ ++ TCP
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRI------------------TCP-------------- 143
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
+ +S P+I W+ + I +G N L A
Sbjct: 144 -----------NVDGYFPSSVKPTITWYMGCYKI--QNFNNVIPEGMN--LSFLIALIS- 187
Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685
+ G+Y V T T T+ V+ VG P + I SP +
Sbjct: 188 NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPV----------IHSPNDHVVYE 237
Query: 686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKAL--PPPKAEWTVNGTVI 735
E + + V F L + WT++G
Sbjct: 238 KE------------------PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Score = 43.3 bits (101), Expect = 2e-04
Identities = 17/178 (9%), Positives = 39/178 (21%), Gaps = 45/178 (25%)
Query: 572 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII-----LELKEADSETD 626
+ ++ S +++W+ + I L + D
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN-D 90
Query: 627 AGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDV 686
G+Y + N + + V V
Sbjct: 91 TGNYTCMLRNTTYCSKVAFPLEV------------------------------------V 114
Query: 687 EKPVETAPVIDPPPPPEVLVKKGEDL---KIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
+K + P + + + ++ F + P W + I V
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV 172
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 109 bits (273), Expect = 1e-28
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 326 KAEFIKKLDD-LEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
A F K LD +V + VE+ K +VKW+K+GQEI+ S K E KG R L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
I N + D+ EY + D++ S EL V P
Sbjct: 67 INNCQMTDDSEYYVTAGDEKCSTELFVRSGPS 98
Score = 89.4 bits (222), Expect = 1e-21
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 415 PPEISVPLQD-VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
+ L +V + + F +EL VKWYK+G+EI S G ++ L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66
Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
I + + D EY GD++ L V +
Sbjct: 67 INNCQMTDDSEYYVTA---GDEKCSTELFVRSG 96
Score = 74.0 bits (182), Expect = 3e-16
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 17/107 (15%)
Query: 112 EKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 167
+ + L + +G V++ P +V+WYK+G+ I+ +
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
L + C D Y V G + + L V + P S
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFV--------RSGPSS 99
Score = 73.6 bits (181), Expect = 4e-16
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 234 EKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 289
+ + L + +G V++ P +V+WYK+G+ I+ +
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + C D Y V G + + L V
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFV 93
Score = 62.4 bits (152), Expect = 3e-12
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 553 GSPG-QAPLFIERFEEKT-VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G F + + V + G +R + ++ A P + W++N + + S K
Sbjct: 1 GSSGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHK 59
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
G IL + D +Y V A G + V
Sbjct: 60 GCQRILFINNCQMT-DDSEYYVTA----GDEKCSTELFV 93
Score = 61.6 bits (150), Expect = 5e-12
Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 12 PPTFSKKTKPVY-AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
F+K P Y ++ V V +A P+ ++ WY NG+ ++ + + +F +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI- 64
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTG 109
+ I + + ++ Y V A + + ++ + ++G
Sbjct: 65 ---LFINNCQMTDDSEYYVTAGDEKCSTELFVRSGPSSG 100
Score = 48.5 bits (116), Expect = 2e-07
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 744 KAEFIKKLDD-LEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
A F K LD +V + VE+ K +VKW+KN I+
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIR 49
Score = 38.9 bits (91), Expect = 6e-04
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+ P V KG ++ V A P + +W NG I PS +
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYI 55
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 109 bits (273), Expect = 2e-28
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
G+ E ++ + DL VK E AV + EV+ +K KW+K+G E++ SK++TI G KL
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKL 65
Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVP 421
+I ++ DEG+YT S + L ++S P
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGP 103
Score = 92.4 bits (230), Expect = 1e-22
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
E+ + D+ V E+A F+ E++ KWYK+G E+ S+ +T+S G+ KL+I
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLT 512
ED G+Y+ + + ++
Sbjct: 68 DDVRPEDEGDYTFVP---DGYALSLSAKLNFLEIKVSG 102
Score = 84.7 bits (210), Expect = 6e-20
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 164
+G + +L+ + D+++ E AV +V E +WYK+G ++ I+
Sbjct: 3 SGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGR 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
H L + +D+G Y+ + +A LN E K S P S
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNF--LEIKVSG--PSS 105
Score = 83.2 bits (206), Expect = 2e-19
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 286
+G + +L+ + D+++ E AV +V E +WYK+G ++ I+
Sbjct: 3 SGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGR 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
H L + +D+G Y+ + +A LN
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNF 95
Score = 69.3 bits (170), Expect = 1e-14
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
++ + TVK +V + + W++N + S + G L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
+ + E D GDY V S + A++ KV P
Sbjct: 67 IDDVRPE-DEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104
Score = 63.2 bits (154), Expect = 2e-12
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ + + + + V+ + WY NG ++ + + S H
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCE-VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHK-- 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+ I ++ +EG YT V + K PS
Sbjct: 65 --LVIDDVRPEDEGDYTFVPDGYALSLS--AKLNFLEIKVSGPS 104
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S G+ E ++ + DL VK E AV + EV+ +K KW+KN ++
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVR 49
Score = 30.0 bits (68), Expect = 0.71
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
++ VK E + +W NG + PSKR+
Sbjct: 14 DIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHV 59
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 109 bits (273), Expect = 2e-28
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
+ + E VL E+ A+V+W KDG+E+ S + ++K+ T+R+L++ +
Sbjct: 16 YPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAV 75
Query: 389 SVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQD 424
+ D GEY C + D+ S + V E P I
Sbjct: 76 QLEDSGEYLCEIDDESASFTVTVTEPPVRIIYSGPS 111
Score = 102 bits (255), Expect = 5e-26
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 406 SAELNVVELPPEISVP--LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTL 463
S+ + ++ I P V R E+ EL + A V+W KDG+E+ S + L
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLL 61
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
+ ++L++ + LED+GEY C + D+ + T+TV P V + PS
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEI---DDESASFTVTVTEPPVRIIYSGPS 111
Score = 77.9 bits (192), Expect = 2e-17
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEK 163
T V+ E VL+ ++ P +V W KDG+ + + E
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED 65
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
L L +D G Y ++ ++ + V + P S
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSGPSS 112
Score = 76.3 bits (188), Expect = 6e-17
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 8/110 (7%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEK 285
T V+ E VL+ ++ P +V W KDG+ + + E
Sbjct: 7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED 65
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDD 335
L L +D G Y ++ ++ + V + I
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSGPS 111
Score = 58.2 bits (141), Expect = 1e-10
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
++ + L ++ P + W ++ + ++ SP +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 615 ILELKEADSETDAGDYKVVATNELGSAT 642
L L D+G+Y +E S T
Sbjct: 69 RLVLPAV-QLEDSGEYLCEIDDESASFT 95
Score = 56.7 bits (137), Expect = 5e-10
Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ V A V L + P ++ W +GE + E+ ++ + +
Sbjct: 12 SWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRR- 69
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDI---PVKVNTGKPE 112
+ + +++ + G Y + + + PV++ P
Sbjct: 70 ---LVLPAVQLEDSGEYLCEIDDESASFTVTVTEPPVRIIYSGPS 111
Score = 44.4 bits (105), Expect = 8e-06
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 733 TVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
+ S + + + E VL E+ A+V+W K+ +
Sbjct: 6 SGTDVSSWIV----YPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVV 54
Score = 34.0 bits (78), Expect = 0.041
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 689 PVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
++ ++ P V + E + + P + WT +G +V S + + E
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKE 64
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 115 bits (288), Expect = 4e-28
Identities = 35/330 (10%), Positives = 88/330 (26%), Gaps = 47/330 (14%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P T A + + + + L YN + E + + ++ V
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCP--PIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV 86
Query: 72 ---SIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITE 127
+ Y + G+ + + + + PS + +++ +
Sbjct: 87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR----KPPSCIPETYELGTHD 142
Query: 128 GESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
L + + + WYK+ + + ++ L + +D GRY V
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
+ +++ ++ V+ + L ++
Sbjct: 203 YDDVRIKNDIVVSR-------------CKILTVIP----------SQDHRFKLILDPKIN 239
Query: 247 ITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQIT--------SEKNTHTLTLIQ 294
+T GE A ++ ++W I TL
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN 299
Query: 295 CSTKDKGR-YSVKVTNKEGTVESAANLNVD 323
+ + G Y+ + N + ++
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 107 bits (269), Expect = 9e-26
Identities = 56/323 (17%), Positives = 95/323 (29%), Gaps = 40/323 (12%)
Query: 218 YVVSELDTLQVNTGKPEKPSIL-EPLHDVSITEGESAVLSVQVGGE---------PSPKV 267
+ DTL K PS + + GE + V
Sbjct: 11 FFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVV 70
Query: 268 EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA 327
W K GK + + + S RY VT K G + +
Sbjct: 71 NWEKIGKTRRPLNRRVKNGDLWIANYT-SNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPP 129
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
I + +L ++ L + K + W+K+ QE+ + L+I
Sbjct: 130 SCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---LII 186
Query: 386 RNISVHDEGEYTCSLPDQETSAELNVV------------ELPPEISVPLQDVKVSRDEKA 433
N + D G Y C + + + ++V + + + V+ E A
Sbjct: 187 HNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPA 246
Query: 434 SFE-----IELTKGDALVKWYKDGKEIAFSEN-----VTLSIDGKKQKLIIFSAGLEDAG 483
+ L D L+ W I + +T S + L + E G
Sbjct: 247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306
Query: 484 E-YSCRVG-DTGDKESKATLTVE 504
Y+CR DK T+ +E
Sbjct: 307 NTYTCRGHNYYFDKTLTTTVVLE 329
Score = 89.9 bits (222), Expect = 1e-19
Identities = 41/311 (13%), Positives = 75/311 (24%), Gaps = 68/311 (21%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE-YTC----SLPDQETSAELNV 411
V W K G+ + + K G L I N + +D Y C D +
Sbjct: 70 VNWEKIGKTRRPLNRRV--KNGD---LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSH 124
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKK 469
+ PP ++ + + WYK+ +E+
Sbjct: 125 IRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN- 183
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF 528
LII + LED+G Y C V D ++ ++ +T++P
Sbjct: 184 --LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI----------LTVIP------- 224
Query: 529 QVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP 588
+ + V + ++
Sbjct: 225 --------------------------SQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258
Query: 589 ----SIVWFRNNKPLLSSPKKREIF-----DGENIILELKEADSETDAGDYKVVATNELG 639
I W + ++ L + E Y N
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
Query: 640 SATHGARVTVD 650
T V ++
Sbjct: 319 DKTLTTTVVLE 329
Score = 56.0 bits (134), Expect = 2e-08
Identities = 48/367 (13%), Positives = 82/367 (22%), Gaps = 113/367 (30%)
Query: 392 DEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKG--------- 442
+ E+ + D A+ + P + + + E S + +
Sbjct: 7 EITEFFNKMRD-TLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYND 65
Query: 443 -DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGE-YSCRV--GDTGDKESK 498
D +V W K GK L+ K L I + D+ Y C V + +
Sbjct: 66 KDNVVNWEKIGKTRR-----PLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGI 120
Query: 499 ATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQA 558
+ P
Sbjct: 121 VRSHIRKP---------------------------------------------------- 128
Query: 559 PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
P I E +K I L + A +I W++NN+ L+ K II
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHN 188
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDS 677
D+G Y + + V+
Sbjct: 189 P----ELEDSGRYDCYVHYDDVRIKNDIVVSR---------------------------- 216
Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA----EWTVNGT 733
+ V P++ V GE I + +W
Sbjct: 217 ---CKILTVIPS--QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271
Query: 734 VIVPSKR 740
I+
Sbjct: 272 WIIGLDF 278
Score = 36.3 bits (83), Expect = 0.031
Identities = 25/233 (10%), Positives = 54/233 (23%), Gaps = 57/233 (24%)
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
+ W + K P R + +G+ L + S Y T + G
Sbjct: 65 DKDNVVNWEKIGKTRR--PLNRRVKNGD---LWIANYTSNDSHRRYLCTVTTKNGDC--- 116
Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETA-PVIDPPPPPE 703
+ V + +PP + ++ ++
Sbjct: 117 VQGIVRSH-IRKPPS---------------CIPETYELGTHDKYGIDLYCGILYAKHYNN 160
Query: 704 V---------------LVKKGEDLKIE-VRFK-----------ALPPPKAEWTVNGTVIV 736
+ + G++L I + K + V+ I+
Sbjct: 161 ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Query: 737 PSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-----KADVKWFKNNSLI 784
+ + + V E A + S + W + I
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI 273
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 107 bits (269), Expect = 5e-28
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
G F ++L +L+V+E+ AV + A V W K E++ S K ++G +L
Sbjct: 7 GANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
I + D YTC + ++ A+L V S
Sbjct: 67 ISALEKADSDTYTCDIGQAQSRAQLLVQGRRSGPS 101
Score = 98.9 bits (247), Expect = 5e-25
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
+ L +++V A F + A V W K E+ S S +G +L I
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
+ D+ Y+C +G +S+A L V+
Sbjct: 68 SALEKADSDTYTCDIGQA---QSRAQLLVQGRRSGP 100
Score = 83.2 bits (206), Expect = 2e-19
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 164
+G E L ++ + E +AV + + P+ V W K ++ Q + E
Sbjct: 3 SGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
T LT+ D Y+ + G +S A L V + + + PS
Sbjct: 62 TLRLTISALEKADSDTYTCDI----GQAQSRAQLLV------QGRRSGPS 101
Score = 82.0 bits (203), Expect = 5e-19
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKN 286
+G E L ++ + E +AV + + P+ V W K ++ Q + E
Sbjct: 3 SGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGL 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T LT+ D Y+ + G +S A L V
Sbjct: 62 TLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 71.2 bits (175), Expect = 3e-15
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 553 GSPG--QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G A F E V+EKGT K PA ++ W + L +S K + +
Sbjct: 1 GSSGSSGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 655
G + L + + D+ Y G A A++ V + G
Sbjct: 60 GLTLRLTISALEKA-DSDTYTCDI----GQAQSRAQLLVQGRRSG 99
Score = 63.1 bits (154), Expect = 2e-12
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
F+++ + EE + P + W L+ + + S +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLR-- 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+TI +++K + YT + A++ + G+ PS
Sbjct: 65 --LTISALEKADSDTYTCDIGQAQSRAQLLV-----QGRRSGPS 101
Score = 50.8 bits (122), Expect = 4e-08
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S G F ++L +L+V+E+ AV + A V W K ++
Sbjct: 2 SSGSSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELR 49
Score = 28.5 bits (64), Expect = 2.7
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+ V++ + + P W + S + +
Sbjct: 14 ELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQ 55
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 106 bits (266), Expect = 1e-27
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
E K L +EV E A E+E++ +W GQ + S I + G L
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVEL 414
++ N + GE + + +++A L V EL
Sbjct: 63 ILHNCQLGMTGEVSFQAANTKSAANLKVKEL 93
Score = 100 bits (250), Expect = 2e-25
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
E+ PL V+V E A FEIEL++ D +W G+ +A S + + DGKK LI+
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ L GE S + +T +S A L V+
Sbjct: 65 HNCQLGMTGEVSFQAANT---KSAANLKVKE 92
Score = 85.8 bits (213), Expect = 1e-20
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 165
G + +PL+ V + GE+A +++ EP +W G+ + D +I +
Sbjct: 1 GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
H L L C G S + N +SAANL V
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN----TKSAANLKV 90
Score = 85.8 bits (213), Expect = 1e-20
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT 287
G + +PL+ V + GE+A +++ EP +W G+ + D +I +
Sbjct: 1 GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
H L L C G S + N +SAANL V
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN----TKSAANLKV 90
Score = 66.2 bits (162), Expect = 1e-13
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
G+ + V T ++ + P W +PL +SP I DG+
Sbjct: 1 GAMAL-IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGK 58
Query: 613 NIILELKEADSETDAGDYKVVATNELGSAT 642
IL L G+ A N +A
Sbjct: 59 KHILILHNCQLG-MTGEVSFQAANTKSAAN 87
Score = 61.9 bits (151), Expect = 4e-12
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 5/88 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
K V E+ ++ P+ W G+PL + + + H
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI-- 61
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
+ + + + G + A N + A
Sbjct: 62 --LILHNCQLGMTGEVSFQAANTKSAAN 87
Score = 52.3 bits (126), Expect = 9e-09
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
E K L +EV E A E+E++ +W +
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLA 46
Score = 31.5 bits (72), Expect = 0.19
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P V V GE E+ P +W + G + S +
Sbjct: 11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCE 52
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 109 bits (274), Expect = 1e-27
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 19/192 (9%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKD-----RQITSEKNTH 288
+ I+ GES QV G+ + W+ +G+ + + ++ ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
TLT+ + D G Y VT ++GT A N+ + K F E KE E+AV+
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI-FQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 348 VEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SL 400
+V S + W G+++ K + + L IR I DEG Y C
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---LQIRGIKKTDEGTYRCEGRILA 178
Query: 401 PDQETSAELNVV 412
+ ++ V+
Sbjct: 179 RGEINFKDIQVI 190
Score = 106 bits (266), Expect = 1e-26
Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 44/220 (20%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP-SPKVEWYK-DGKLIKD-----RQITSEKNTH 166
+ I+ GES QV G+ + W+ +G+ + + ++ ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEPKESKETPPSPPPYVVSELDT 225
TLT+ + D G Y VT ++GT A N+ +
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI------------------------- 97
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQIT 282
+K EGE AV+ V P + W G+ + KD +
Sbjct: 98 -------FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
N + L + D+G Y + + ++ V
Sbjct: 151 VLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 102 bits (255), Expect = 5e-25
Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 13/195 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP-EPDLLWYY-NGEPLQETDEVVFSDQSDMHS 69
++ + D+ W+ NGE L + + +D S
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEA-KMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
S +TI + + G+Y V +G + + VK+ +K EG
Sbjct: 62 --STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF----QKLMFKNAPTPQEFKEG 115
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
E AV+ V P + W G+ + KD + N + L + D+G Y +
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEG 174
Query: 186 TNKEGTVESAANLNV 200
+ ++ V
Sbjct: 175 RILARGEINFKDIQV 189
Score = 96.0 bits (239), Expect = 6e-23
Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 61/244 (25%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKG--DALVKWYK-DGKEIAFSEN--VTLSIDGKK 469
++ + ++S E F ++ D + W+ +G++++ ++ + D
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 470 QKLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
L I++A ++DAG Y C V D E+ + +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK--------------------- 100
Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 587
+F + KE ++ V +S
Sbjct: 101 -------------------------------LMFKNAPTPQEFKEGEDAVIVCDVVSSLP 129
Query: 588 PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 647
P+I+W + ++ R I N L+++ +TD G Y+ + +
Sbjct: 130 PTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGI-KKTDEGTYRCEGRILARGEINFKDI 187
Query: 648 TVDV 651
V V
Sbjct: 188 QVIV 191
Score = 90.3 bits (224), Expect = 7e-21
Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 16/190 (8%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFK-DGQEIKTSKK--VTIEKKGTIRK 382
+ E+ E+ +V D D+ WF +G+++ +++ +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 383 LLIRNISVHDEGEYTC-----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
L I N ++ D G Y C E + + + + + E A
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFKEGEDAVIVC 122
Query: 438 ELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GD 494
+ + W G+++ ++V + L I D G Y C
Sbjct: 123 D-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 495 KESKATLTVE 504
+ + + V
Sbjct: 181 EINFKDIQVI 190
Score = 59.1 bits (143), Expect = 4e-10
Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 46/190 (24%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKR---EIFDGE 612
+ + + + + +V I WF N LS ++R D +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
+ L + A + DAG YK V T E G+
Sbjct: 61 SSTLTIYNA-NIDDAGIYKCVVTAEDGT-------------------------------- 87
Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG 732
+ V+V+ + + P P K+GED I + PP W G
Sbjct: 88 ------QSEATVNVK--IFQKLMFKNAPTP-QEFKEGEDAVIVCDVVSSLPPTIIWKHKG 138
Query: 733 TVIVPSKRVK 742
++ K V+
Sbjct: 139 RDVILKKDVR 148
Score = 33.6 bits (77), Expect = 0.14
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 740 RVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
++ K F E KE E+AV+ +V S + W +
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV 141
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 109 bits (274), Expect = 2e-27
Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 28/215 (13%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQV-GGEPSP-KVEWYKDGKLI---KDRQITSEKNTHT 167
P E +V + EG+ VL P W + + D++ +
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
L + DKG YS V++ T + L +
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIP----------------------LIPIP 105
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
T KP I+ DV G++ L G P P + W K + + S
Sbjct: 106 ERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG- 164
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + +D+G Y + N G + A + V
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 99.6 bits (248), Expect = 5e-24
Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 15/199 (7%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLE--VRLVAVPEPDLLWYYNGEPLQ-ETDEVVFSDQSDM 67
+ P ++ V +E + L + W N P+ D+ F Q++
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN- 65
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV------NTGKPEKPSILEPLH 121
+ I +++ ++G Y+ + + T KP I+
Sbjct: 66 ----GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
DV G++ L G P P + W K + + S L + +D+G Y
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNIQLEDEGIY 180
Query: 182 SVKVTNKEGTVESAANLNV 200
+ N G + A + V
Sbjct: 181 ECEAENIRGKDKHQARIYV 199
Score = 94.2 bits (234), Expect = 3e-22
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 51/240 (21%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKG---DALVKWYKDGKEIAFSENVTLSIDGKKQ 470
L P +V+V + + D +W + + + + +
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 471 KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
L I + D G YSC V + K +
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP-------------------------- 100
Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
++P + + +F++ + L +P P
Sbjct: 101 ----------------LIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144
Query: 590 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
I W + +P+ S+ + +L++ D G Y+ A N G H AR+ V
Sbjct: 145 IRWRKVLEPMPSTAE----ISTSGAVLKIFNI-QLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 93.4 bits (232), Expect = 8e-22
Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 23/196 (11%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQV-GGEPSP-KVEWYKDGKLI---KDRQITSEKNTHT 289
P E +V + EG+ VL P W + + D++ +
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV---------DQGKAEFIKKLDDLEVKE 340
L + DKG YS V++ T + A+ + + D+
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 341 RENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC- 398
+N LE + D++W K + + ++ +++ L I NI + DEG Y C
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV----LKIFNIQLEDEGIYECE 183
Query: 399 ---SLPDQETSAELNV 411
+ A + V
Sbjct: 184 AENIRGKDKHQARIYV 199
Score = 89.6 bits (222), Expect = 1e-20
Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 30/199 (15%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTS---DKADVKWFKDGQEIKTS---KKVTIEKKGTIRK 382
++ ++ VKE + VL + D +W + + + ++ + G
Sbjct: 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN--- 67
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVV---------ELPPEISVPLQDVKVSR 429
L I N+ D+G Y+C + ++ + P +I V +DV
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 430 DEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
+ + E G+ + ++W K + + +S G L IF+ LED G Y C
Sbjct: 128 GQNVTLECFAL-GNPVPDIRWRKVLEPM--PSTAEISTSGAV--LKIFNIQLEDEGIYEC 182
Query: 488 RVG-DTGDKESKATLTVEA 505
G + +A + V+A
Sbjct: 183 EAENIRGKDKHQARIYVQA 201
Score = 62.6 bits (152), Expect = 3e-11
Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 35/186 (18%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIIL 616
P E E VKE + L+ S W N P+ + KR N L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNID 676
+ +D G+Y ++ + + ++ +
Sbjct: 69 YIANV-EASDKGNYSCFVSSPSITKSVFSKFIPLI------------------------- 102
Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIV 736
E+ + P +V G+++ +E P P W +
Sbjct: 103 -------PIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP 155
Query: 737 PSKRVK 742
+ +
Sbjct: 156 STAEIS 161
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 111 bits (278), Expect = 2e-27
Identities = 48/286 (16%), Positives = 91/286 (31%), Gaps = 39/286 (13%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLI 293
K I VS+ + E+ L +V P +W+ +G + +T + +
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYRIT 53
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD 353
S D G Y + + ++ + ++ E E L D
Sbjct: 54 SASVNDSGEYRCQRGLSGRSDPIQLEIHRGW----LLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 354 K--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS----LPDQETSA 407
K +V ++++G+ K L I ++ G Y CS
Sbjct: 110 KLVYNVLYYRNGKAFKFFHWN--------SNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 408 ELNVVELP--PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTL 463
+ V EL P ++ + + + E +L ++ Y + + TL
Sbjct: 162 SVTVKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLYFSF----YMGSKTL 216
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCR----VGDTGDKESKATLTVEA 505
+ I +A ED+G Y C G+ + + L V
Sbjct: 217 RGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 109 bits (274), Expect = 7e-27
Identities = 41/296 (13%), Positives = 76/296 (25%), Gaps = 64/296 (21%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLI 171
K I VS+ + E+ L +V P +W+ +G + +T + +
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYRIT 53
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTG 231
S D G Y + + ++ V
Sbjct: 54 SASVNDSGEYRCQRGLSGRSDPIQLEIHRGW--------LLLQVSSRVF----------- 94
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 290
TEGE L + V +Y++GK K L
Sbjct: 95 ----------------TEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH-----WNSNL 133
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE-FIKKLDDLEVKERENAVLEVE 349
T+++ + G Y K + ++ V + + + E L E
Sbjct: 134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCE 193
Query: 350 VTSDKADV------KWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
++ + ++ T + I D G Y C
Sbjct: 194 TKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCE 241
Score = 104 bits (262), Expect = 3e-25
Identities = 47/311 (15%), Positives = 83/311 (26%), Gaps = 72/311 (23%)
Query: 25 EENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
+ VTL ++ +P W+ NG Q + I S +
Sbjct: 14 FQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST--------------PSYRITSASVND 59
Query: 84 EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPS 142
G Y + + + +L+ V TEGE L +
Sbjct: 60 SGEYRCQRGLSGRSDPIQLEIH------RGWLLLQVSSRV-FTEGEPLALRCHAWKDKLV 112
Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
V +Y++GK K LT+++ + G Y K + ++ V
Sbjct: 113 YNVLYYRNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV-- 165
Query: 203 YEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 262
+ P S + EG LS +
Sbjct: 166 -------KELFPAPVLNASV---------------------TSPLLEGNLVTLSCETKLL 197
Query: 263 PSP-----KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA 317
+Y K ++ R + ++ +D G Y + ++G V
Sbjct: 198 LQRPGLQLYFSFYMGSKTLRGRN-----TSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Query: 318 ---ANLNVDQG 325
L V G
Sbjct: 253 SPELELQV-LG 262
Score = 97.3 bits (242), Expect = 1e-22
Identities = 52/332 (15%), Positives = 90/332 (27%), Gaps = 78/332 (23%)
Query: 326 KAEFIKKLDDLEVKERENAVL--EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
KA + + V + E L EV + +WF +G +TS
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSY 50
Query: 384 LIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD 443
I + SV+D GEY C S + + + + + + E + K
Sbjct: 51 RITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDK 110
Query: 444 AL--VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKAT 500
+ V +Y++GK F L I + G Y C G + +
Sbjct: 111 LVYNVLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS 162
Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
+TV + +P +
Sbjct: 163 VTV-------------------------KELFPAPVLNAS-------------------- 177
Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 620
+ E + L + K + + + S + E IL +
Sbjct: 178 -----VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARR 232
Query: 621 ADSETDAGDYKVVATNELGSATHG-ARVTVDV 651
DS G Y A E G+ + + V
Sbjct: 233 EDS----GLYWCEAATEDGNVLKRSPELELQV 260
Score = 70.7 bits (173), Expect = 1e-13
Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 28/198 (14%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ E + L ++L+Y NG+ +
Sbjct: 82 RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------- 130
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
S +TI G Y + I V V P + + + EG
Sbjct: 131 -SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV-KELFPAPVLNASV-TSPLLEGNL 187
Query: 131 AVLSVQVGGEPSP-----KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
LS + +Y K ++ R + ++ +D G Y +
Sbjct: 188 VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN-----TSSEYQILTARREDSGLYWCEA 242
Query: 186 TNKEGTVESA---ANLNV 200
++G V L V
Sbjct: 243 ATEDGNVLKRSPELELQV 260
Score = 66.1 bits (161), Expect = 4e-12
Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 77/249 (30%)
Query: 416 PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
I++ V V ++E + E+ G + +W+ +G S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYR 51
Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
I SA + D+GEY C+ G +G + L +
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDP-IQLEIHRG--------------------------- 83
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVW 592
L ++ + E + L ++++
Sbjct: 84 -------------------------WLLLQ-VSSRVFTEGEPLALRCHAWKDKLVYNVLY 117
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
+RN K L + + + + G Y + + G VTV E
Sbjct: 118 YRNGKAFKFFHWNSN--------LTILKT-NISHNGTYHCSGMGKHRYTSAGISVTV-KE 167
Query: 653 KVGRPPINS 661
P +N+
Sbjct: 168 LFPAPVLNA 176
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 105 bits (263), Expect = 3e-27
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLI 385
+ F KK +EV AV E E V+W + G +I S K + +GT L +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 386 RNISVHDEGEYTCSLPDQETSAELNVVE 413
R + D+G Y + +L V+E
Sbjct: 68 REVGPADQGSYAVIAGSSKVKFDLKVIE 95
Score = 95.1 bits (237), Expect = 1e-23
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
+ S + V+V+ A FE E + V+W + G +I+ S L+ +G +
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRH 63
Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
L + G D G Y+ G + + K L V
Sbjct: 64 TLTVREVGPADQGSYAVIAGSS---KVKFDLKVI 94
Score = 78.9 bits (195), Expect = 5e-18
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 164
GK + + V + G AV + KV W + G I + +E
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
HTLT+ + D+G Y+V G+ + +L V
Sbjct: 62 RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 78.9 bits (195), Expect = 5e-18
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 286
GK + + V + G AV + KV W + G I + +E
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
HTLT+ + D+G Y+V G+ + +L V
Sbjct: 62 RHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 58.9 bits (143), Expect = 5e-11
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 555 PGQAPL--FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
PG+ P+ F ++ V A+ + W R + +S K +G
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGT 61
Query: 613 NIILELKEADSETDAGDYKVVATNELGSAT 642
L ++E D G Y V+A +
Sbjct: 62 RHTLTVREVGPA-DQGSYAVIAGSSKVKFD 90
Score = 58.5 bits (142), Expect = 6e-11
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
FSKK + V S E + W G + +++ + + H+
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLATEGTRHT-- 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
+T++ + ++G Y V+A + + +
Sbjct: 65 --LTVREVGPADQGSYAVIAGSSKVKFD 90
Score = 52.3 bits (126), Expect = 1e-08
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 737 PSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
P K + F KK +EV AV E E V+W + S I
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDIS 49
Score = 34.2 bits (79), Expect = 0.022
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
+P + P V V G E + K W G+ I S + E
Sbjct: 2 EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE 59
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 104 bits (262), Expect = 7e-27
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTI 374
S ++ V + I+ L+D++V+E +A ++ ++ V WF D + ++ I
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62
Query: 375 EKK-GTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
+ + G L +R +++ D G DQ SA L V E P S
Sbjct: 63 DAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFS 108
Score = 103 bits (259), Expect = 2e-26
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYKDGKEIAFSENVTL 463
+ + V I L+DV V A+F ++ + V W+ D + +E +
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62
Query: 464 SI-DGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
G L + L+D+G GD+ + A L V F PS
Sbjct: 63 DAQPGGYHVLTLRQLALKDSGTIYFEA---GDQRASAALRVTEKPSVFSRSGPS 113
Score = 91.7 bits (228), Expect = 3e-22
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 165
+ + I+E L DV + EG SA ++ V W+ D +
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
H LTL Q + KD G + G ++A L V S+ P S
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPSS 114
Score = 86.7 bits (215), Expect = 2e-20
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
+ + I+E L DV + EG SA ++ V W+ D +
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKK 332
H LTL Q + KD G + G ++A L V + + F +
Sbjct: 70 HVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRS 110
Score = 67.0 bits (164), Expect = 1e-13
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENI 614
G+ IE E+ V+E + ++ + + WF + PL ++ + G
Sbjct: 11 GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTV---DVEKVGRPP 658
+L L++ + D+G A G A + V P
Sbjct: 71 VLTLRQLALK-DSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112
Score = 65.1 bits (159), Expect = 5e-13
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 5/115 (4%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF 61
S + +++G + + V +E S T R+ + W+ + PL +
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62
Query: 62 SDQSD-MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
Q H +T++ + ++ G A ++ A + + K + PS
Sbjct: 63 DAQPGGYHV----LTLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFSRSGPS 113
Score = 47.8 bits (114), Expect = 7e-07
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 741 VKGKA-EFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKNNSLIK 785
V+G+ I+ L+D++V+E +A ++ ++ V WF + + +
Sbjct: 9 VQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH 55
Score = 35.8 bits (83), Expect = 0.009
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+V V++G R W ++ T + ++ +
Sbjct: 19 DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE 61
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 104 bits (261), Expect = 8e-27
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P I PL+D V+ E EL++ V W KD K I S+ + +G L
Sbjct: 6 SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEF 510
+I A L+DAGEY+C V + +S A+L VE A
Sbjct: 66 VIRGASLKDAGEYTCEVEAS---KSTASLHVEEKASGP 100
Score = 103 bits (260), Expect = 9e-27
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
IK L+D V E+ L E++ V W KD + I+ S+K + +GT+ L+IR
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 388 ISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
S+ D GEYTC + +++A L+V E S
Sbjct: 70 ASLKDAGEYTCEVEASKSTASLHVEEKASGPS 101
Score = 83.5 bits (207), Expect = 1e-19
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 170
+I++PL D + GE L ++ +P V W KD K I+ + E L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
S KD G Y+ +V + T A+L+V E S P
Sbjct: 68 RGASLKDAGEYTCEVEASKST----ASLHV---------EEKASGPS 101
Score = 81.6 bits (202), Expect = 7e-19
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 292
+I++PL D + GE L ++ +P V W KD K I+ + E L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
S KD G Y+ +V + T A+L+V+
Sbjct: 68 RGASLKDAGEYTCEVEASKST----ASLHVE 94
Score = 71.9 bits (177), Expect = 2e-15
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G + I+ E++ V + L ++ + P + W ++ K + S K + +
Sbjct: 1 GSSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE 59
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
G +L ++ A + DAG+Y + A + V+ EK P
Sbjct: 60 GTMAMLVIRGASLK-DAGEYTCEVEASKST----ASLHVE-EKASGPS 101
Score = 64.6 bits (158), Expect = 6e-13
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P K + + +V L L P + W + + ++++ + + M
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM-- 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+ I+ ++ G YT + + A + + K PS
Sbjct: 65 --LVIRGASLKDAGEYTCEVEASKSTASLHV-----EEKASGPS 101
Score = 50.4 bits (121), Expect = 5e-08
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S G A IK L+D V E+ L E++ V W K+ I+
Sbjct: 2 SSGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIR 49
Score = 28.4 bits (64), Expect = 3.1
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
P + V GED+++ P W + I S++ E
Sbjct: 14 PLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE 59
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 105 bits (263), Expect = 2e-26
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 4/144 (2%)
Query: 76 IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
+ K + + N+ + KP + + D+ + EG +A
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 136 QVGGEPSPKVEWYKDGKLIKD----RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGT 191
+V G P P+V W+KD +K+ + E+ +LT+ + D +Y+ K N G
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 192 VESAANLNVDPYEPKESKETPPSP 215
A L V+ + E
Sbjct: 124 ATCTAELLVETMGKEGEGEGEGEE 147
Score = 91.5 bits (227), Expect = 1e-21
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
KP + + D+ + EG +A +V G P P+V W+KD +K+ + E+
Sbjct: 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKEREN 343
+LT+ + D +Y+ K N G A L V+ E + + E +E E
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153
Score = 79.1 bits (195), Expect = 2e-17
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
P P F + + V E R KV+ P P ++WF+++ P+ S + +D E
Sbjct: 37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 614 II-LELKEADSETDAGDYKVVATNELGSATHGARVTVDV-EKVGRPPI 659
L + E + D Y A N LG AT A + V+ K G
Sbjct: 97 NCSLTISEVCGD-DDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143
Score = 78.4 bits (193), Expect = 3e-17
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 11/148 (7%)
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVD-----QGKAEFIKKLDDLEVKERENAVLEVEV 350
K G N A L K F K + D+EV E A + +V
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65
Query: 351 TSD-KADVKWFKDGQEIKTSKKVTIEKKGT-IRKLLIRNISVHDEGEYTC----SLPDQE 404
+V WFKD +K S+ I+ L I + D+ +YTC SL +
Sbjct: 66 EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEK 432
+AEL V + E + + +E+
Sbjct: 126 CTAELLVETMGKEGEGEGEGEEDEEEEE 153
Score = 68.7 bits (168), Expect = 9e-14
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 2 SSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF 61
+A+ + P F+K + E S + ++ P+P+++W+ + P++E+
Sbjct: 31 EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 90
Query: 62 S-DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
D+ S +TI + ++ YT A N GEA + V T E E
Sbjct: 91 DYDEEGNCS----LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGE 146
Query: 121 HDVSITE 127
D E
Sbjct: 147 EDEEEEE 153
Score = 67.6 bits (165), Expect = 2e-13
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 385 IRNISVHDEGEYTCSLPDQETSAELNV-------VELPPEISVPLQDVKVSRDEKASFEI 437
+ + ++ + + + + P + + D++V A F+
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 438 ELTKGDAL--VKWYKDGKEIAFSENVTLSIDGK-KQKLIIFSAGLEDAGEYSCR-VGDTG 493
++ G V W+KD + S + + D + L I +D +Y+C+ V G
Sbjct: 64 KVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 494 DKESKATLTVEAPAVE 509
+ A L VE E
Sbjct: 123 EATCTAELLVETMGKE 138
Score = 37.5 bits (87), Expect = 0.004
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 736 VPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
V ++ K F K + D+EV E A + +V +V WFK+++ +K
Sbjct: 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK 83
Score = 35.2 bits (81), Expect = 0.026
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 675 IDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
+++ E E+ P + V +G + + + + P P+ W +
Sbjct: 23 VENEDAFLEEVAEEKPHVKPYFTKTILD-MEVVEGSAARFDCKVEGYPDPEVMWFKDDNP 81
Query: 735 IVPSKRVK 742
+ S+ +
Sbjct: 82 VKESRHFQ 89
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 102 bits (257), Expect = 2e-26
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 167
P I + + G++ + V +P+ +V+WY +G ++ T+ T
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
L ++ C T D G Y TN +G A L+V +
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
Score = 101 bits (253), Expect = 8e-26
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHT 289
P I + + G++ + V +P+ +V+WY +G ++ T+ T
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEF 329
L ++ C T D G Y TN +G A L+V ++
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT--GGDY 103
Score = 89.7 bits (223), Expect = 8e-22
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
+ AP R V R + V++ P + W+ N L S K
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
+ LE+ + ++ D+G Y+ V TN G A+ A + V
Sbjct: 64 LTLEILDCHTD-DSGTYRAVCTNYKGEASDYATLDVT 99
Score = 77.3 bits (191), Expect = 2e-17
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
++ V +N + V S A+VKW+ +G E++ S K+ + L I
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEIL 69
Query: 387 NISVHDEGEYTC----SLPDQETSAELNV 411
+ D G Y + A L+V
Sbjct: 70 DCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Score = 73.9 bits (182), Expect = 3e-16
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
++ P I++ ++ +V + F + + A VKWY +G E+ S + +
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
L I +D+G Y G+ ATL V
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 73.5 bits (181), Expect = 4e-16
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + + + + + + P ++ WY+NG LQE+ ++ +++ S + +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT-- 65
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
+ I + G Y V N +GEA
Sbjct: 66 --LEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 41.9 bits (99), Expect = 6e-05
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
++ V +N + V S A+VKW+ N ++
Sbjct: 10 RITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ 50
Score = 37.7 bits (88), Expect = 0.002
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
++ AP I V G++ + + ++ P + +W NG + S ++
Sbjct: 5 LDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH 56
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 102 bits (256), Expect = 4e-26
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 315 ESAANLNVDQGKAEFIKKLDDL-EVKERENAVLEVEVTSDKADVKWFKDGQEIKTS-KKV 372
++++ + F KKL+ +V + L VE+ A+VKW K+GQEI+ S K
Sbjct: 5 HHHSSMDEKK-STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKY 63
Query: 373 TIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVE 413
E G R L I S+ D+ Y C + ++ S EL V E
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVKE 104
Score = 83.6 bits (207), Expect = 2e-19
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 412 VELPPEISVPLQD-VKVSRDEKASFEIELTKGDALVKWYKDGKEIAFS-ENVTLSIDGKK 469
+ L+ +VS+ K +EL DA VKW K+G+EI S G K
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
+ L I L D Y C V G ++ L V+
Sbjct: 72 RTLTISQCSLADDAAYQCVV---GGEKCSTELFVK 103
Score = 73.2 bits (180), Expect = 6e-16
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 110 KPEKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 164
+ + + + L +++G L+V++ +V+W K+G+ I+ S
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
TLT+ QCS D Y V ++ + L V
Sbjct: 71 KRTLTISQCSLADDAAYQCVVGGEKCS----TELFV 102
Score = 73.2 bits (180), Expect = 6e-16
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 232 KPEKPSILEPLHD-VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 286
+ + + + L +++G L+V++ +V+W K+G+ I+ S
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
TLT+ QCS D Y V ++ + L V
Sbjct: 71 KRTLTISQCSLADDAAYQCVVGGEKCS----TELFV 102
Score = 63.2 bits (154), Expect = 2e-12
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 558 APLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENII 615
+ F ++ E V + IRL ++ A + W +N + + S K G
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 616 LELKEADSETDAGDYKVVATNELGSAT 642
L + + D Y+ V E S
Sbjct: 74 LTISQCSLA-DDAAYQCVVGGEKCSTE 99
Score = 60.1 bits (146), Expect = 3e-11
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Query: 3 SLADILEGIPPTFSKKTKPVY-AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE-VV 60
+ + E F KK +P Y + ++ L V +A + ++ W NG+ +Q + +
Sbjct: 6 HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSGSKYI 64
Query: 61 FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102
F + +TI ++ Y V + ++ +
Sbjct: 65 FESIGAKRT----LTISQCSLADDAAYQCVVGGEKCSTELFV 102
Score = 50.1 bits (120), Expect = 7e-08
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 736 VPSKRVKGKAEFIKKLDDL-EVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S K F KKL+ +V + L VE+ A+VKW KN I+
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQ 57
Score = 32.7 bits (75), Expect = 0.087
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
+ + P V KG +++ V A + +W NG I S
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGS 61
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 105 bits (264), Expect = 4e-26
Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 17/208 (8%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
T V EN+ V L P + W ++ + V
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 72 SIV----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
+ + T KS+ + + G YT + G + ++ VK+ P PS S T
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--PSKPTVNIPSSATI 121
Query: 128 GESAVLSVQV-GGEPSPKVEWYKDGKLI----------KDRQITSEKNTHTLTLIQCSTK 176
G AVL+ G P + W+KDG ++ + T L S
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYE 204
D G YS + N GT ++ + ++ E
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 105 bits (262), Expect = 8e-26
Identities = 45/232 (19%), Positives = 69/232 (29%), Gaps = 52/232 (22%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT------- 165
++ +V I E LS G SP+VEW D + K T
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 166 ----HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
+T + +D G Y+ V+ + G + + P
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP---------------- 107
Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI---- 276
PS S T G AVL+ G P + W+KDG ++
Sbjct: 108 --------------PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153
Query: 277 ------KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ T L S D G YS + N GT ++ + +
Sbjct: 154 KSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 95.0 bits (236), Expect = 2e-22
Identities = 30/195 (15%), Positives = 62/195 (31%), Gaps = 24/195 (12%)
Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK--------LLI 385
++ + E L + V+W D + + + +
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKASFEIELT 440
++++ D G YTC + ++ + V +PP + +A
Sbjct: 73 KSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQ 132
Query: 441 KGD--ALVKWYKDGKEIAFSE-------NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG- 490
G + W+KDG + + N + ++ +L+ D GEYSC
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 491 DTGDKESKATLTVEA 505
G + + +EA
Sbjct: 193 GYGTPMTSNAVRMEA 207
Score = 79.6 bits (196), Expect = 5e-17
Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 73/257 (28%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEI----AFSENVTLSIDGK 468
+ +V++ + + G + V+W D + ++ +T S + +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 469 KQK----LIIFSAGLEDAGEYSCRV---GDTGDKESKATLTVEAPAVEFLTKLPSVTLVP 521
+ S ED G Y+C V G E K L V P
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP--------------- 107
Query: 522 HLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
P + L
Sbjct: 108 -------------------------------------PSKPTVNIPSSATIGNRAVLTCS 130
Query: 582 V-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD------SETDAGDYKVVA 634
SP WF++ + ++PK F + +L + S +D G+Y A
Sbjct: 131 EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEA 190
Query: 635 TNELGSATHGARVTVDV 651
N G+ V ++
Sbjct: 191 RNGYGTPMTSNAVRMEA 207
Score = 56.1 bits (135), Expect = 6e-09
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSD--- 66
+PP+ P A + L P + W+ +G + + + +
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
++ + + + G Y+ A+N G V++
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 54.6 bits (131), Expect = 2e-08
Identities = 21/192 (10%), Positives = 42/192 (21%), Gaps = 50/192 (26%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG------ 611
+ E + E ++L +P + W +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 612 --ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
+ K + D G Y + + E G++ +V +
Sbjct: 64 TFLPTGITFKSV-TREDTGTYTCMVSEEGGNSYGEVKVKLI------------------- 103
Query: 670 HHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE-VRFKALPPPKAEW 728
V P P G + PP + W
Sbjct: 104 --------------------VLVPPSK-PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142
Query: 729 TVNGTVIVPSKR 740
+G V+ + +
Sbjct: 143 FKDGIVMPTNPK 154
Score = 35.3 bits (81), Expect = 0.043
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGK 744
V PEV + + +K+ + P+ EW + K
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNK 54
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 102 bits (255), Expect = 4e-26
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKK 371
G+ S+ + + L D V + L+ E++ + KW K+G ++ S +
Sbjct: 1 GSSGSSG--------LKILTPLTDQTVNLGKEICLKCEISEN-IPGKWTKNGLPVQESDR 51
Query: 372 VTIEKKGTIRKLLIRNISVHDEGEYTCSLP--DQETSAELNVVELP 415
+ + +KG I KL+I N DEG+Y + + A+++V+ P
Sbjct: 52 LKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGP 97
Score = 97.4 bits (243), Expect = 2e-24
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
+I PL D V+ ++ + E++ + KW K+G + S+ + + G+ KL+I
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEIS-ENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
+A ED G+Y D + A + V +
Sbjct: 66 ANALTEDEGDYVFAP-DAYNVTLPAKVHVISG 96
Score = 77.0 bits (190), Expect = 3e-17
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 170
IL PL D ++ G+ L ++ +W K+G ++ ++ + H L +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
T+D+G Y V A ++V
Sbjct: 66 ANALTEDEGDYVFAPDA--YNVTLPAKVHV 93
Score = 77.0 bits (190), Expect = 3e-17
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLTL 292
IL PL D ++ G+ L ++ +W K+G ++ ++ + H L +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISEN--IPGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T+D+G Y V A ++V
Sbjct: 66 ANALTEDEGDYVFAPDA--YNVTLPAKVHV 93
Score = 68.1 bits (167), Expect = 3e-14
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 553 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 611
GS G + L + ++TV I L K + S W +N P+ S + + + G
Sbjct: 1 GSSGSSGLKILTPLTDQTVNLGKEICL--KCEISENIPGKWTKNGLPVQESDRLKVVQKG 58
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
L + A +E D GDY + A+V V
Sbjct: 59 RIHKLVIANALTE-DEGDYVFAPDAYNVTLP--AKVHVIS 95
Score = 57.0 bits (138), Expect = 3e-10
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
E+ L+ + W NG P+QE+D + + +H
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVVQKGRIHK-- 62
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
+ I + +EG Y
Sbjct: 63 --LVIANALTEDEGDYVFAPDAYNVTLP 88
Score = 46.6 bits (111), Expect = 1e-06
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
+ + L D V + L+ E++ + KW KN ++
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISEN-IPGKWTKNGLPVQ 47
Score = 31.9 bits (73), Expect = 0.15
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P + V G+++ ++ P K WT NG + S R+K
Sbjct: 13 PLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLK 53
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 102 bits (255), Expect = 6e-26
Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEK 163
+G P L I EG + +V G P PK+ W+KDGK I I +
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62
Query: 164 N-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
+ T +L + D G Y++ N +G + L V + S P
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV---------QAVNSGPS 108
Score = 98.6 bits (246), Expect = 8e-25
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEK 285
+G P L I EG + +V G P PK+ W+KDGK I I +
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62
Query: 286 N-THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ T +L + D G Y++ N +G + L V
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 88.6 bits (220), Expect = 3e-21
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
AP F + + + E + +V +P P I WF++ K + I +
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 614 II--LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
L + + D G+Y ++A N G + R+ V G
Sbjct: 64 GTCSLHTTASTLD-DDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSD 66
P F K K E VT R+ P+P + W+ +G+ + + + D
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
S + + ++G YT++A N +G + V PS
Sbjct: 65 TCS----LHTTASTLDDDGNYTIMAANPQGRISCTGRLMV-QAVNSGPS 108
Score = 68.9 bits (169), Expect = 2e-14
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGT-IRKLL 384
F KL ++ E V + K + WFKDG++I TI++ L
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 69
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPPE 417
++ D+G YT + L V +
Sbjct: 70 TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 66.2 bits (162), Expect = 2e-13
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN--VTLSIDGKKQ 470
P + L+ K+ +F + G+ + W+KDGK+I+ +
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66
Query: 471 KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
L ++ L+D G Y+ G L V+A
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
Score = 38.5 bits (90), Expect = 0.001
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
F KL ++ E V + K + WFK+ I
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS 50
Score = 32.7 bits (75), Expect = 0.11
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
AP + + +G + R P PK W +G I P
Sbjct: 8 APFFEMKLKH-YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD 54
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 107 bits (269), Expect = 6e-26
Identities = 48/321 (14%), Positives = 94/321 (29%), Gaps = 82/321 (25%)
Query: 114 PSILEPLHDVSITEGESAVLSVQV-GGEPSPK---VEWYKDGKLIKDRQITSEKNTHTLT 169
++ + G+ L+ V G EP P W KD + ++ NT TLT
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLT 55
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
+ ++++ G Y V V + + + + +
Sbjct: 56 VADATSENAGSYKVTVQDTDTMTSVESEVFL----------------------------- 86
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQV---GGEPSPKV-----EWYKDGKLIKDRQI 281
+ E + ++ L V GG+ W K +I
Sbjct: 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI----- 141
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQG-KAEFIKKLDDLEVKE 340
T +T+ + + G Y+VKV + ++A+ + ++ V
Sbjct: 142 ---DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVAL 198
Query: 341 RENAVLEVEVTSDKADVK-----------WF--KDGQEIKTS---------KKVTIEKKG 378
L V+ D W+ ++GQ T + +I G
Sbjct: 199 GNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG 258
Query: 379 TIRKLLIRNISVHDEGEYTCS 399
L + + D ++ C
Sbjct: 259 H---LFKESATYDDTAKFWCV 276
Score = 102 bits (255), Expect = 4e-24
Identities = 48/306 (15%), Positives = 97/306 (31%), Gaps = 63/306 (20%)
Query: 236 PSILEPLHDVSITEGESAVLSVQV-GGEPSPK---VEWYKDGKLIKDRQITSEKNTHTLT 291
++ + G+ L+ V G EP P W KD + ++ NT TLT
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLT 55
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV--DQGKAEFIKKLDDLEVKERENAVLEVE 349
+ ++++ G Y V V + + + + + + I + V + + L
Sbjct: 56 VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115
Query: 350 VTSDKAD---------VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
V W K I T++ +TI + + G YT +
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI-----------QEFTADKNGVYTVKV 164
Query: 401 PDQ----ETSAELNVVELPPEISVP-LQDVKVSRDEKASFEIELTKGDALVK-------- 447
+ SA ++ + ++ V+ + S +++
Sbjct: 165 WGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTI 224
Query: 448 ---WY--KDGKEI---------AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
WY ++G+ E +++ DG L SA +D ++ C
Sbjct: 225 KYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---LFKESATYDDTAKFWCVAKLYQ 281
Query: 494 DKESKA 499
E +
Sbjct: 282 QIEDET 287
Score = 90.3 bits (223), Expect = 7e-20
Identities = 43/335 (12%), Positives = 95/335 (28%), Gaps = 70/335 (20%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLL---WYYNGEPLQETDEVVFSDQSD 66
+ T S ++ TL + P P L W + +P +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------- 51
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
+ +T+ G Y V ++ + ++ + E + ++
Sbjct: 52 -----ATLTVADATSENAGSYKVTVQDTDTMTSVE-SEVFLMEEAELIVNITEPQHFYVS 105
Query: 127 EGESAVLSVQV---GGEPSPKV-----EWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDK 178
L V GG+ W K +I T +T+ + +
Sbjct: 106 SQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--------DTTQDITIQEFTADKN 157
Query: 179 GRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSI 238
G Y+VKV + ++A+ + V E + V G
Sbjct: 158 GVYTVKVWGESEDSAASASTKIM---------LATMNVDQDVVE--SKTVALG------- 199
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKV--EWY--KDGKL---IKDRQITSEKNTHT-- 289
+++S+ S + G P+ + WY ++G+L + ++ +
Sbjct: 200 ----NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255
Query: 290 ----LTLIQCSTKDKGRYSVKVTNKEGTVESAANL 320
L + D ++ + + +
Sbjct: 256 PDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 69.9 bits (170), Expect = 4e-13
Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 42/227 (18%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKKVTIEKKGTIRKL 383
+ + + L V D+ W KD Q + L
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE----------NNTATL 54
Query: 384 LIRNISVHDEGEYTCSLPDQ----ETSAELNVVEL--PPEISVPLQDVKVSRDEKASFEI 437
+ + + + G Y ++ D +E+ ++E Q VS
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 438 ELTKGDAL---------VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ W K I ++++T+ + G Y+ +
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQ-----------EFTADKNGVYTVK 163
Query: 489 VGDT-GDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
V D + A+ + + + V + + +S
Sbjct: 164 VWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSE 210
Score = 64.5 bits (156), Expect = 2e-11
Identities = 30/258 (11%), Positives = 60/258 (23%), Gaps = 73/258 (28%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDAL-----VKWYKDGKEIAFSENVTLSIDGK 468
+ +S+ + + + + L W KD + +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENN 50
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTVEAPAVEFLTKLPSVTLVPHLGDA 526
L + A E+AG Y V DT + +E + P V D
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110
Query: 527 TFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 586
+ S G+ P +
Sbjct: 111 ELHATVK-------------------FSGGKTP-----------------------ADNY 128
Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646
W + + ++ + ++E + G Y V E + A
Sbjct: 129 ELHYSWSKGEDVIDTTQ-----------DITIQEF-TADKNGVYTVKVWGESEDSAASAS 176
Query: 647 VTVDV--EKVGRPPINSI 662
+ + V + + S
Sbjct: 177 TKIMLATMNVDQDVVESK 194
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 107 bits (268), Expect = 7e-26
Identities = 49/293 (16%), Positives = 90/293 (30%), Gaps = 34/293 (11%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 290
G+P PSI ++ + G++ L+ V W + E +
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEM----VENKKNEW 59
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
+ G Y+ +N S+ + V + A+ L KE +A++ +
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLT---SSIYVFV-RDPAKLFLVGLPLFGKEDSDALVRCPL 115
Query: 351 T-SDKADVKWFK-DGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----LPDQ 403
T + + DG+ + T K I + + C+
Sbjct: 116 TDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI--TIKNVKRAYHRLCVRCAAQRDGTWLH 173
Query: 404 ETSAELNVVE---LPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFS 458
L V E P +SVP + + + + + W K +
Sbjct: 174 SDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233
Query: 459 ENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
V + + L I SA ++D+G + C +T G TL V
Sbjct: 234 AQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 101 bits (252), Expect = 1e-23
Identities = 40/328 (12%), Positives = 82/328 (25%), Gaps = 64/328 (19%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
E PP+ + E ++L + W + + +
Sbjct: 9 EPSPPSIHPAQSELIVEAGDTLSLTCI----DPDFVRWTFKTYFNEMVE----------- 53
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ + + + G YT N + + V P K + + E
Sbjct: 54 NKKNEWIQEKAEATRTGTYTCSNSNGLTSS-----IYVFVRDPAKLFL--VGLPLFGKED 106
Query: 129 ESAVLSVQVGGEPSPKVEWYK-DGKLIKD--RQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
A++ + + + DGK + + + K T+ ++ +
Sbjct: 107 SDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVK-RAYHRLCVRCAA 165
Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
+ S TL+V P + P
Sbjct: 166 QRDGTWLHSDK---------------------------FTLKVREAIKAIPVVSVPETSH 198
Query: 246 SITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTH----------TLTLIQ 294
+ +G++ + + S W K + + H TLT+
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258
Query: 295 CSTKDKGRYSVKVTNKEGTVESAANLNV 322
D G + N G+ L V
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 97.9 bits (243), Expect = 1e-22
Identities = 39/325 (12%), Positives = 83/325 (25%), Gaps = 64/325 (19%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
G+P PSI ++ + G++ L+ V W + E +
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEM----VENKKNEW 59
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
+ G Y+ +N S+ + V
Sbjct: 60 IQEKAEATRTGTYTCSNSNGLT---SSIYVFV---------------------------- 88
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKD--RQITSEK 285
+ + + E A++ + + + DGK + + + K
Sbjct: 89 ----RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK 144
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNVDQGKA---EFIKKLDDLEVKER 341
T+ ++ + + S L V + +K+
Sbjct: 145 AGITIKNVK-RAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203
Query: 342 ENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRK-------LLIRNISVHD 392
+ + + + W K + + +V L I + V D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Query: 393 EGEYTC----SLPDQETSAELNVVE 413
G + C + + L VVE
Sbjct: 264 SGVFMCYANNTFGSANVTTTLKVVE 288
Score = 87.5 bits (216), Expect = 5e-19
Identities = 47/330 (14%), Positives = 83/330 (25%), Gaps = 70/330 (21%)
Query: 334 DDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
+L V+ + L V+W + + + +
Sbjct: 20 SELIVEAGDTLSLTCIDPDF---VRWTFKTYFNEMVE-------NKKNEWIQEKAEATRT 69
Query: 394 GEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDA-LVKWYK-D 451
G YTCS + TS+ V P ++ + + D A LT + D
Sbjct: 70 GTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD 129
Query: 452 GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFL 511
GK + ++T + K I C G T++
Sbjct: 130 GKSL--PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLK------- 180
Query: 512 TKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVK 571
V P+ +K
Sbjct: 181 -----VREAIKA----------------------------------IPVVSVPETSHLLK 201
Query: 572 EKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENI-------ILELKEADS 623
+ T ++ +K + +W + N + + L + A
Sbjct: 202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA-R 260
Query: 624 ETDAGDYKVVATNELGSATHGARVTVDVEK 653
D+G + A N GSA + V VEK
Sbjct: 261 VDDSGVFMCYANNTFGSANVTTTLKV-VEK 289
Score = 58.6 bits (141), Expect = 2e-09
Identities = 42/329 (12%), Positives = 72/329 (21%), Gaps = 104/329 (31%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
PP I ++ V + S V+W ++ KK + I
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCI---DPDFVRWTFKT-------YFNEMVENKKNEWIQ 61
Query: 475 FSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS 534
A G Y+C + S + V PA FL LP
Sbjct: 62 EKAEATRTGTYTCSN--SNGLTSSIYVFVRDPAKLFLVGLPL------------------ 101
Query: 535 PDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 594
KE + +
Sbjct: 102 ----------------------------------FGKEDSDALVRCPLTDPQVSQYSLIE 127
Query: 595 NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 654
+ L P + +K + A + G+ H + T+ V +
Sbjct: 128 CDGKSL--PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKVREA 184
Query: 655 GRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKI 714
+ PV+ P + +KKG+ +
Sbjct: 185 IKAI-----------------------------------PVVSVPETSHL-LKKGDTFTV 208
Query: 715 EVRFKALPPP-KAEWTVNGTVIVPSKRVK 742
K + + W +VK
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVK 237
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 100 bits (252), Expect = 9e-26
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 167
+G PS L D ++ EG+ VL V G P P++ W +G+ I+ + T E
Sbjct: 6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE 65
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L + +D G Y+ N G V +A + V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 100 bits (252), Expect = 9e-26
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHT 289
+G PS L D ++ EG+ VL V G P P++ W +G+ I+ + T E
Sbjct: 6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAE 65
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + +D G Y+ N G V +A + V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 82.0 bits (203), Expect = 4e-19
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
AP F ++ V E L V+ +P P I W N +P+ + R + L
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAEL 66
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+++A E D G Y +A N LG + A VTV
Sbjct: 67 HIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98
Score = 69.3 bits (170), Expect = 1e-14
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI 374
S+ + ++ F L D V E ++ VL+ V + W +GQ I+ ++
Sbjct: 2 SSGSSGMEV-APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE 60
Query: 375 EKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
L I++ D G YTC +L SA + V
Sbjct: 61 AGVAE---LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 64.7 bits (158), Expect = 6e-13
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVT 462
+S + E+ P S L+D V + + + G + W +G+ I ++ +
Sbjct: 2 SSGSSGM-EVAPSFSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARS-- 57
Query: 463 LSIDGKKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTV 503
+ + +L I A ED G Y+C G A +TV
Sbjct: 58 -TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 64.3 bits (157), Expect = 7e-13
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 3 SLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFS 62
S + P+FS K E + L+ + P P + W NG+P+Q +
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA 61
Query: 63 DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
+++H I+ + G YT +A+N G+ V V+
Sbjct: 62 GVAELH-------IQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 38.8 bits (91), Expect = 6e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
S ++ F L D V E ++ VL+ V + W N I+
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ 53
Score = 34.6 bits (80), Expect = 0.021
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 687 EKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
+E AP V +G+D ++ + P P+ W +NG I ++
Sbjct: 5 SSGMEVAPSFSSVLKD-CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS 57
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 100 bits (251), Expect = 1e-25
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
E P I E + ++ +G A V+V G+P P+ EWYK+G I+ E N
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGK 326
L + + +D VK N G S A L V Q K
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV-QAK 99
Score = 100 bits (250), Expect = 2e-25
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 165
E P I E + ++ +G A V+V G+P P+ EWYK+G I+ E N
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L + + +D VK N G S A L V
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 90.8 bits (226), Expect = 4e-22
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
+AP ER + +TV + +V P P W++N + S + + +N+
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L +++ E D+ V A N G + A + V
Sbjct: 64 LVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96
Score = 69.2 bits (170), Expect = 1e-14
Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTI-EKKGTIRKLLI 385
+ +++ V + +A V V + +W+K+G +I+ S ++ + + +L+I
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 66
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNV 411
R+++ D + + A L V
Sbjct: 67 RDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 68.8 bits (169), Expect = 2e-14
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSY 70
P ++ + + S+ VR+V P+P+ WY NG ++ +D + + + ++
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE- 63
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA 98
+ I+ + + V A N GE
Sbjct: 64 ---LVIRDVTGEDSASIMVKAINIAGET 88
Score = 67.7 bits (166), Expect = 4e-14
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
P+I +Q V + A F + + G +WYK+G +I S+ + + +
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 472 LIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
L+I ED+ + + G+ S A L V+A
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 40.3 bits (95), Expect = 2e-04
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ +++ V + +A V V + +W+KN I+
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE 47
Score = 35.3 bits (82), Expect = 0.009
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 694 PVIDPP----PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P ++ P V +G D VR P P+ EW NG I S R+
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIY 53
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 100 bits (250), Expect = 2e-25
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 413 ELPPEISVP--LQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
P I P + + E+ EL++ D WYKDG+++ SE + + +DG+K
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAV 508
+LI+ A ++D+GE+ CR + +TV+ P+
Sbjct: 66 RLILPEAKVQDSGEFECRT---EGVSAFFGVTVQDPSG 100
Score = 97.5 bits (243), Expect = 2e-24
Identities = 20/89 (22%), Positives = 37/89 (41%)
Query: 331 KKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISV 390
+ L E VL E++ W+KDGQ+++ S+ + ++ G +L++ V
Sbjct: 15 QDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 391 HDEGEYTCSLPDQETSAELNVVELPPEIS 419
D GE+ C + V + S
Sbjct: 75 QDSGEFECRTEGVSAFFGVTVQDPSGPSS 103
Score = 74.0 bits (182), Expect = 3e-16
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 107 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 163
+ P + ++ T E VL+ ++ WYKDG+ +++ + +
Sbjct: 4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDG 62
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
H L L + +D G + + V + + V PS P
Sbjct: 63 RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTV----------QDPSGPS 102
Score = 73.6 bits (181), Expect = 5e-16
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEK 285
+ P + ++ T E VL+ ++ WYKDG+ +++ + +
Sbjct: 4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDG 62
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
H L L + +D G + + V + + V
Sbjct: 63 RKHRLILPEAKVQDSGEFECRT----EGVSAFFGVTV 95
Score = 58.2 bits (141), Expect = 1e-10
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 554 SPGQAPLFIERFEEK---TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
S P+ I ++K T + L ++ + W+++ + + S D
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMD 61
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSAT 642
G L L EA + D+G+++
Sbjct: 62 GRKHRLILPEAKVQ-DSGEFECRTEGVSAFFG 92
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 14 TFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
+ + + V L ++ + WY +G+ ++E++ +V H
Sbjct: 12 LSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYKDGQKVEESELLVVKMDGRKHR---- 66
Query: 74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+ + K ++ G + + + + P PS
Sbjct: 67 LILPEAKVQDSGEFECRTEGVSAFFGVTVQD------PSGPS 102
Score = 42.4 bits (100), Expect = 4e-05
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 749 KKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
+ L E VL E++ W+K+ ++
Sbjct: 15 QDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVE 51
Score = 33.1 bits (76), Expect = 0.057
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 687 EKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
PV ++ P + E + + A W +G + S+ + K +
Sbjct: 6 SGPVH---ILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMD 61
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 100 bits (250), Expect = 2e-25
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI--AFSENVTLSIDGKKQKL 472
++ L+D E+ E E+++ DA VKW+K+G+EI + ++GKK L
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPA 507
II A DA EYS +S A L+V+ +
Sbjct: 67 IIEGATKADAAEYSVMTTGG---QSSAKLSVDLKS 98
Score = 99.7 bits (249), Expect = 3e-25
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKT--S 369
G+ S+ K+L+D E LE EV+ D A+VKWFK+G+EI
Sbjct: 1 GSSGSSG--------IMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK 52
Query: 370 KKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVELPP 416
+ I +G L+I + D EY+ ++SA+L+V
Sbjct: 53 SRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDLKSG 99
Score = 80.8 bits (200), Expect = 1e-18
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSE 162
+ + + L D + GE L +V V+W+K+G+ I +I E
Sbjct: 2 SSGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
H L + + D YSV T + + A L+V + K P S
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTGGQSS----AKLSV------DLKSGPSS 102
Score = 77.8 bits (192), Expect = 1e-17
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSE 284
+ + + L D + GE L +V V+W+K+G+ I +I E
Sbjct: 2 SSGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
H L + + D YSV T + + A L+VD
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTGGQSS----AKLSVD 95
Score = 66.6 bits (163), Expect = 1e-13
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 553 GSPGQAPL-FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-- 609
GS G + + ++ E+ T + L +V + ++ WF+N + ++ PK R
Sbjct: 1 GSSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59
Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+G+ IL ++ A DA +Y V+ T S A+++VD+
Sbjct: 60 EGKKHILIIEGATKA-DAAEYSVMTTGGQSS----AKLSVDL 96
Score = 56.6 bits (137), Expect = 4e-10
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ--ETDEVVFSDQSDMHS 69
+K+ + A V LE V+ + ++ W+ NGE + + H
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECE-VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ I+ K + Y+V+ + AK+ + +K
Sbjct: 66 ----LIIEGATKADAAEYSVMTTGGQSSAKLSVDLKS 98
Score = 52.7 bits (127), Expect = 1e-08
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
K+L+D E LE EV+ D A+VKWFKN I
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEII 48
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 103 bits (258), Expect = 2e-25
Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 17/200 (8%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAV-PEPDLLWYYNGEPLQETDEVVF-----SDQS 65
F + TL +L P++ W +G+ L+ D D+
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 66 DMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHDVS 124
D VS + I S++ + G Y + V + P LE D +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE----GLPYFLEEPEDRT 117
Query: 125 ITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
+ LS Q G P P + W +D + T+ + +L +S
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPL----ATAPGHGPQRSLHVPGLNKTSSFSC 173
Query: 184 KVTNKEGTVESA-ANLNVDP 202
+ N +G S A + V P
Sbjct: 174 EAHNAKGVTTSRTATITVLP 193
Score = 100 bits (250), Expect = 2e-24
Identities = 40/227 (17%), Positives = 71/227 (31%), Gaps = 52/227 (22%)
Query: 112 EKPSILEPLHDVSITEGESAVL--SVQVGGEPSPKVEWYKDGKLIK------------DR 157
E+ + +++ G + L +QV GEP P+V W +DG++++ +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGED 59
Query: 158 QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
+ L + D G+Y V T S
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPG-------------------- 99
Query: 218 YVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLI 276
+ + P LE D ++ LS Q G P P + W +D +
Sbjct: 100 -------YVGLE----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148
Query: 277 KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
T+ + +L +S + N +G S A + V
Sbjct: 149 ----ATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 85.3 bits (211), Expect = 3e-19
Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 28/198 (14%)
Query: 329 FIKKLDDLEVKERENAVLE--VEVTSDKADVKWFKDGQEIKTSKKVTIEKKG-------- 378
F+ ++ L ++V + +V W +DGQ ++ + +
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 379 -TIRKLLIRNISVHDEGEYTC---SLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKA 433
+ +L I ++ + D G+Y C S V +E P +D V+ +
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124
Query: 434 SFEIELTKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
+ + +G + W +D +A + G + + GL +SC
Sbjct: 125 NLSCQ-AQGPPEPVDLLWLQDAVPLA-------TAPGHGPQRSLHVPGLNKTSSFSCEAH 176
Query: 491 -DTGDKESK-ATLTVEAP 506
G S+ AT+TV
Sbjct: 177 NAKGVTTSRTATITVLPQ 194
Score = 81.9 bits (202), Expect = 6e-18
Identities = 39/250 (15%), Positives = 70/250 (28%), Gaps = 75/250 (30%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQK- 471
++ +R + +L V W +DG+ + +++ + + +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 472 --------LIIFSAGLEDAGEYSCRVGDT-GDKES-KATLTVEAPAVEFLTKLPSVTLVP 521
L I S L D G+Y C V S + +E
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL--------------- 106
Query: 522 HLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 581
P F+E E++TV L +
Sbjct: 107 -------------------------------------PYFLEEPEDRTVAANTPFNLSCQ 129
Query: 582 VKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 640
+ P P ++W ++ PL ++P G L + + A N G
Sbjct: 130 AQGPPEPVDLLWLQDAVPLATAPG-----HGPQRSLHV---PGLNKTSSFSCEAHNAKGV 181
Query: 641 AT-HGARVTV 649
T A +TV
Sbjct: 182 TTSRTATITV 191
Score = 54.1 bits (130), Expect = 2e-08
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENII 615
+ F+ T T L +++ P + W R+ + L + +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 616 LELKEADS--------ETDAGDYKVVATNELGSA-THGARVTVDV 651
+ S +D G Y+ + + + V ++
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG 105
Score = 45.3 bits (107), Expect = 2e-05
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEV 59
S + P F ++ + N+ L + PEP DLLW + PL
Sbjct: 95 VSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG- 153
Query: 60 VFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
H + + + + ++ A N +G
Sbjct: 154 --------HGPQRSLHVPGL--NKTSSFSCEAHNAKGVT 182
Score = 30.3 bits (68), Expect = 1.8
Identities = 14/148 (9%), Positives = 35/148 (23%), Gaps = 60/148 (40%)
Query: 697 DPPP----PPEVLVKKGEDLKIEVRFKAL-PPPKAEWTVNGTVIVPSKRVK--------- 742
+ P P + +G + + + PP+ W +G ++ + +
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 743 --------------------------------------------GKAEFIKKLDDLEVKE 758
G F+++ +D V
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 759 RENAVLEVEVTSD--KADVKWFKNNSLI 784
L + D+ W ++ +
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPL 148
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 99.8 bits (249), Expect = 3e-25
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRK 382
G K+L +EV E E+ E ++ + A W G+ + +S + ++G
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
L++R + D GE S+ + A L V E S
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSKASLIVRERSGPSS 103
Score = 97.8 bits (244), Expect = 1e-24
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
I+ L+ ++V E SFE L+ A W GK + S + G+K L
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
++ A DAGE V SKA+L V
Sbjct: 68 VVREAAPSDAGEVVFSVRGL---TSKASLIVRER 98
Score = 82.8 bits (205), Expect = 2e-19
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEK 163
+G I + L + + EGES + S W GK + Q T +
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
+ L + + + D G V + S A+L V P
Sbjct: 63 RKYILVVREAAPSDAGEVVFSV----RGLTSKASLIV---------RERSGPS 102
Score = 82.4 bits (204), Expect = 3e-19
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK---DRQITSEK 285
+G I + L + + EGES + S W GK + Q T +
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ L + + + D G V + S A+L V
Sbjct: 63 RKYILVVREAAPSDAGEVVFSV----RGLTSKASLIV 95
Score = 62.8 bits (153), Expect = 3e-12
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIF 609
GS G + +R + V E + + S + +W K + SS + +
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSAT 642
G IL ++EA DAG+ A+
Sbjct: 61 QGRKYILVVREAAPS-DAGEVVFSVRGLTSKAS 92
Score = 60.9 bits (148), Expect = 1e-11
Identities = 10/89 (11%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+K+ K + E + E L +W G+ + + + Q +
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI- 66
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAK 99
+ ++ + G + +A
Sbjct: 67 ---LVVREAAPSDAGEVVFSVRGLTSKAS 92
Score = 47.0 bits (112), Expect = 8e-07
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD--VKWFKNNSLIK 785
S G K+L +EV E E+ E ++ + A W +
Sbjct: 2 SSGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG 51
Score = 30.1 bits (68), Expect = 0.76
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRF-KALPPPKAEWTVNGTVIVPSKRVK 742
+ V +GE E A WTV G + S R +
Sbjct: 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQ 57
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 99.3 bits (248), Expect = 3e-25
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 168
KP I+ L D +++ A +V+ GEP P W KDGK I +++ +K L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + T D G Y+ V N G+V S+ L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 99.3 bits (248), Expect = 3e-25
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTHTL 290
KP I+ L D +++ A +V+ GEP P W KDGK I +++ +K L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + T D G Y+ V N G+V S+ L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 85.8 bits (213), Expect = 2e-20
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
P+ + ++ TV + K P P+ +W ++ K + K + D L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E+ + D+ D+G Y N GS + ++T+
Sbjct: 65 EIHKTDTS-DSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 75.8 bits (187), Expect = 5e-17
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ L D V A V+ T + + W KDG+ I K + + L I
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIH 67
Query: 387 NISVHDEGEYTC----SLPDQETSAELNV 411
D G YTC S +S +L +
Sbjct: 68 KTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 73.9 bits (182), Expect = 3e-16
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
+ P I LQD VS D A F ++ T G+ W KDGK I LS D
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 470 QKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
L I D+G Y+C G S LT++A
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 66.2 bits (162), Expect = 1e-13
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + +S V+ P P +W +G+ + + + S+
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF-- 63
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
+ I + G+YT KN G
Sbjct: 64 --LEIHKTDTSDSGLYTCTVKNSAGSV 88
Score = 39.2 bits (92), Expect = 5e-04
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 689 PVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P+ + PVI V K V+ P P A WT +G I + K
Sbjct: 2 PISSKPVIVTGLQD-TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYK 54
Score = 37.7 bits (88), Expect = 0.002
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 741 VKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ K + L D V A V+ T + + W K+ I
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT 48
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 99.3 bits (248), Expect = 5e-25
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 164
+ P I++ D + GES L +V G W K K I++ ++ + +N
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
LT++ + G Y++ V NK G+ ++ NL V K PP+ P
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV------VDKPDPPAGTP 108
Score = 96.2 bits (240), Expect = 6e-24
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKN 286
+ P I++ D + GES L +V G W K K I++ ++ + +N
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
LT++ + G Y++ V NK G+ ++ NL V
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 82.8 bits (205), Expect = 3e-19
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 553 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 611
GS G P I+ E++ V+ ++ L KV + + W + K + S +
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 657
L + A E G Y ++ N+LGS +TV V+K P
Sbjct: 61 NGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTV-VDKPDPP 104
Score = 77.4 bits (191), Expect = 2e-17
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + + V L ++ W + +QE++ + + +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK-- 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+TI + ++ G YT++ +N+ G + + + V KP+ P+
Sbjct: 65 --LTILAARQEHCGCYTLLVENKLGSRQAQVNLTV-VDKPDPPA 105
Score = 75.8 bits (187), Expect = 1e-16
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ I+ +D +V+ E+ L +VT + W K ++I+ S+ + +E KL I
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTIL 68
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELP 415
G YT L ++ L VV+ P
Sbjct: 69 AARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 73.5 bits (181), Expect = 6e-16
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
P+I +D KV E ++T G W K K+I SE++ + KL
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
I +A E G Y+ V G ++++ LTV
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 45.4 bits (108), Expect = 4e-06
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+ P I P V+ GE +++ + P W I S+ +K
Sbjct: 5 SSGPQIIQFPED-QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMK 55
Score = 36.2 bits (84), Expect = 0.008
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKA-DVKWFKNNSLIK 785
+ I+ +D +V+ E+ L +VT + W K I+
Sbjct: 9 QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ 49
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 98.5 bits (246), Expect = 6e-25
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 286
G P+ L D S+ EG+ ++S++V GEP P V W ++ + ++ +E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGK 326
L ++ D G Y+ K N+ G + A L V +G+
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV-RGE 99
Score = 97.3 bits (243), Expect = 2e-24
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 164
G P+ L D S+ EG+ ++S++V GEP P V W ++ + ++ +E
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L ++ D G Y+ K N+ G + A L V
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 87.7 bits (218), Expect = 4e-21
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIIL 616
P F +++V+E + + +V+ P P + W RN +P+ ++ +G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ A+ DAG Y A NE G+ AR+ V
Sbjct: 65 RILAAERG-DAGFYTCKAVNEYGARQCEARLEV 96
Score = 71.9 bits (177), Expect = 1e-15
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 323 DQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGTI 380
+ F L D V+E ++ ++ + V + K V W ++ Q ++ ++ E +G +
Sbjct: 2 SKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 381 RKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
+L I D G YTC ++ A L V
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 68.1 bits (167), Expect = 3e-14
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
PP V L D V + I + G+ +V W ++ + + + +G +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 472 LIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
L I +A DAG Y+C+ V + G ++ +A L V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 66.1 bits (162), Expect = 2e-13
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PPTF E +V + +R+ P+P + W N +P++ + +
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG---GL 61
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEA 98
+ I + ++ + G YT A N G
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGAR 88
Score = 38.8 bits (91), Expect = 6e-04
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
F L D V+E ++ ++ + V + K V W +N ++
Sbjct: 7 TFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR 47
Score = 34.6 bits (80), Expect = 0.016
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 691 ETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
+ P V++G+D+ + +R + P P W N + P +R
Sbjct: 3 KAPPTFKVSLMD-QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR 51
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 98.6 bits (246), Expect = 6e-25
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTI 380
G + L+D +V + + VEV+ + A V W K+G E+ + +K G
Sbjct: 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 381 RKLLIRNISVHDEGEYTCSLPDQETSAELNVVE 413
L+ ++ D G Y + AEL V E
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCEAELIVEE 99
Score = 95.5 bits (238), Expect = 7e-24
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN----VTLSIDGK 468
P I PL+D +V ++ +E+++ A V W K+G E+ ++ DGK
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 469 KQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
+ LI ED G Y + +A L VE
Sbjct: 66 RHILIFSDVVQEDRGRYQVIT---NGGQCEAELIVEEK 100
Score = 76.2 bits (188), Expect = 4e-17
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------QIT 160
+G I+ PL D + G+ ++V+V E +V W K+G + +
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
+ H L +D+GRY V + A L V+ E +
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVITNGGQCE----AELIVE--EKQ 101
Score = 75.8 bits (187), Expect = 6e-17
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------QIT 282
+G I+ PL D + G+ ++V+V E +V W K+G + +
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ H L +D+GRY V + A L V+
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQVITNGGQCE----AELIVE 98
Score = 61.6 bits (150), Expect = 6e-12
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Query: 553 GSPGQA--PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKR 606
GS G + L + E++ V + + +V + ++W +N L + R
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR 59
Query: 607 EIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
DG+ IL + E D G Y+V+ A
Sbjct: 60 FKKDGKRHILIFSDVVQE-DRGRYQVITNGGQCEAE 94
Score = 56.2 bits (136), Expect = 5e-10
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + V + V V+ ++W NG L D +
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVE-VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAK 99
I+ + + + G Y V+ + EA+
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGGQCEAE 94
Score = 52.7 bits (127), Expect = 8e-09
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S G + L+D +V + + VEV+ + A V W KN +
Sbjct: 2 SSGSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELT 49
Score = 28.5 bits (64), Expect = 2.6
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIK 749
P + V G+ +++ V + W NG + K + F K
Sbjct: 14 PLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKK 62
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 98.6 bits (246), Expect = 8e-25
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 327 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
A+ +++ + +A L EV + +V W+KDG+++ +S KV +E G R+L+++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQ 71
Query: 387 NISVHDEGEYTCSLPDQETSAELNV 411
+ GEY+C Q+ S L V
Sbjct: 72 QAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 97.5 bits (243), Expect = 1e-24
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 402 DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENV 461
+S ++ + P ++V+ A+ E+ + V WYKDGK+++ S V
Sbjct: 2 SSGSSGKVVFAKEQP----AHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLSSSSKV 57
Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ G ++L++ AG +AGEYSC G + L V
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ---QLSFRLQVAG 98
Score = 77.1 bits (190), Expect = 2e-17
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 286
+GK +V G SA LS +V +V WYKDGK + ++ +
Sbjct: 6 SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKA 327
T L + Q + G YS + G + + L V G+
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV-AGQC 100
Score = 76.7 bits (189), Expect = 4e-17
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKN 164
+GK +V G SA LS +V +V WYKDGK + ++ +
Sbjct: 6 SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
T L + Q + G YS + G + + L V
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96
Score = 60.5 bits (147), Expect = 2e-11
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ + V AE + TL VA + ++ WY +G+ L + +V
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCE-VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR- 67
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDI 102
+ ++ + E G Y+ A ++ ++ +
Sbjct: 68 ---LVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 58.6 bits (142), Expect = 8e-11
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 618
E + + L +V A + W+++ K L SS K R G L +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 619 KEADSETDAGDYKVVATNELGSAT 642
++A + +AG+Y A + S
Sbjct: 71 QQA-GQAEAGEYSCEAGGQQLSFR 93
Score = 45.5 bits (108), Expect = 3e-06
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 745 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
A+ +++ + +A L EV + +V W+K+ +
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLS 52
Score = 30.5 bits (69), Expect = 0.53
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 692 TAPVIDPPPPPE---VLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
+ V+ P V + G + A + W +G + S +V+
Sbjct: 6 SGKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVR 58
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 97.4 bits (243), Expect = 2e-24
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLT 291
IL +++ EGESA S GEP P V W + G+++ Q+T+ K T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
+ D+G YSV V N EG E+ L + +
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 97.0 bits (242), Expect = 3e-24
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTHTLT 169
IL +++ EGESA S GEP P V W + G+++ Q+T+ K T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ D+G YSV V N EG E+ L +
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 84.3 bits (209), Expect = 8e-20
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 613
A + + TV E + R P P++ W R + L +S + +
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 614 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E+ + D G+Y VV N G +T+
Sbjct: 70 STFEISSVQAS-DEGNYSVVVENSEGKQEAEFTLTI 104
Score = 77.0 bits (190), Expect = 3e-17
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)
Query: 403 QETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSEN 460
+ L I + + V E A F + G+ + V W + G+ ++ S
Sbjct: 2 HHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSAR 60
Query: 461 VTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
++ K I S D G YS V G +E++ TLT++
Sbjct: 61 HQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 74.7 bits (184), Expect = 2e-16
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ K + V E E+A + + V W + GQ + TS + + I
Sbjct: 16 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 75
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVE 413
++ DEG Y+ S QE L + +
Sbjct: 76 SVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 68.5 bits (168), Expect = 2e-14
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
+ K + + E P P + W G+ L + + +
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST 71
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
I S++ +EG Y+VV +N EG+
Sbjct: 72 ----FEISSVQASDEGNYSVVVENSEGKQ 96
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
S + A + K + V E E+A + + V W + ++
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS 56
Score = 36.6 bits (85), Expect = 0.004
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
A I P + V +GE + P P W G V+ S R +
Sbjct: 9 SKTTLAARILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQ 62
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 97.1 bits (242), Expect = 3e-24
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 103 PVKVNTG-KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQ 158
P+K ++G + P L V + G A L V GEP P V W K G+ +
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS 61
Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
++ H L L D G Y + N G +AA + V
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 95.9 bits (239), Expect = 8e-24
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNTH 288
+ P L V + G A L V GEP P V W K G+ + ++ H
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L L D G Y + N G +AA + V
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 87.1 bits (216), Expect = 8e-21
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
G G P F+ V L V P P +VW + + L +S + DG
Sbjct: 8 GDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA 67
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
L L A DAG Y A N G A A VTV
Sbjct: 68 EHGLLLTAALPT-DAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 80.5 bits (199), Expect = 2e-18
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 312 GTVESAANLNVDQGKA-EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS 369
G +++++ DQG F++ + V A L+ V + V W K GQ++ S
Sbjct: 1 GPMKASS---GDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS 57
Query: 370 KKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELP 415
++++ G LL+ D G Y C + + +A + V+E P
Sbjct: 58 ERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 75.5 bits (186), Expect = 1e-16
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
PP + V+V +A + + G+ +V W K G+++A SE ++ DG + L
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
++ +A DAG Y CR G+ + A +TV P
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 71.6 bits (176), Expect = 2e-15
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
+G PP F + +PV +E L+ ++ P P ++W G+ L ++ + F H
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ + + + GVY A+N GEA V V
Sbjct: 70 G----LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Score = 37.4 bits (87), Expect = 0.002
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 678 PRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVP 737
P +++ D P P P P V V G + +++ PPP W G +
Sbjct: 2 PMKASSGDQGSP----PCFLRFPRP-VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA 56
Query: 738 SKRVK 742
S+R+
Sbjct: 57 SERLS 61
Score = 37.0 bits (86), Expect = 0.003
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 732 GTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
G + S F++ + V A L+ V + V W K +
Sbjct: 1 GPMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA 55
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 102 bits (255), Expect = 4e-24
Identities = 40/308 (12%), Positives = 89/308 (28%), Gaps = 50/308 (16%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEWYKDGKLIK--------------- 277
+++ V G+S L + ++ W + G+
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 278 ------DRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDQGKAEFI 330
++ +E +L + +D+G Y+ T +G+ L V K +
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-LAKPQNT 121
Query: 331 KKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTI---RKLLI 385
++ +++ + T + A + W D + + +V GT+ ++
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 386 RNISVHDEGEYTCS------LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
S D TC Q + L V P + +A+ +
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD- 240
Query: 440 TKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDK 495
+ + W + +L+I C V G +
Sbjct: 241 ARSNPEPTGYNWSTTMGPL--PPFAVAQ----GAQLLIRPVDKPINTTLICNVTNALGAR 294
Query: 496 ESKATLTV 503
+++ T+ V
Sbjct: 295 QAELTVQV 302
Score = 100 bits (251), Expect = 1e-23
Identities = 47/338 (13%), Positives = 91/338 (26%), Gaps = 80/338 (23%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEWYKDGKLIK--------------- 155
+++ V G+S L + ++ W + G+
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 156 ------DRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKES 208
++ +E +L + +D+G Y+ T +G+ L V
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-------- 114
Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKV 267
KP + V +T + GG P ++
Sbjct: 115 ------------------------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQI 150
Query: 268 EWYKDGKLIKDRQITSEKNTHT------LTLIQCSTKDKGRYSVKVTNK--EGTVESAAN 319
W+ D + + + T L+ S D + KV ++ E N
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Query: 320 LNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKK 377
L V I D+ + A L + S+ W + + +
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF---AVAQG 267
Query: 378 GTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNV 411
LLIR + C +L ++ + V
Sbjct: 268 AQ---LLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 98.2 bits (244), Expect = 1e-22
Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 7/191 (3%)
Query: 12 PPTFSKKTKPVYAEENSEVTLE-VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P + + + V V P + W+ + + T +V S +
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVP-GFLSGTVTV 175
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
S+ + + + T ++ E + V + P + SI +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI-SGYDNNWYLGQNE 234
Query: 131 AVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
A L+ P P W + + L + VTN
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ---GAQLLIRPVDKPINTTLICNVTNAL 291
Query: 190 GTVESAANLNV 200
G ++ + V
Sbjct: 292 GARQAELTVQV 302
Score = 95.2 bits (236), Expect = 1e-21
Identities = 48/330 (14%), Positives = 84/330 (25%), Gaps = 66/330 (20%)
Query: 22 VYAEENSEVTLEVRLVAVPEPD-----LLWYYNGEPLQ---------------ETDEVVF 61
V VTL L L W +GE + E V
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 62 SDQSDMHSYVSIVTIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
+ S+ + ++ +EG YT + +G +DI ++V KP +
Sbjct: 70 ARLGAELRNASL-RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL----AKPQNTAEV 124
Query: 121 HDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHT------LTLIQC 173
V +T + GG P ++ W+ D + + + T L+
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKP 233
S D + KV ++ + L V
Sbjct: 185 SQVDGKNVTCKVEHESFEKPQLLTV--------------------------NLTVYY--- 215
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLTL 292
+ + A L+ P P W + + L +
Sbjct: 216 PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ---GAQLLI 272
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
VTN G ++ + V
Sbjct: 273 RPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 93.6 bits (232), Expect = 4e-21
Identities = 48/358 (13%), Positives = 95/358 (26%), Gaps = 95/358 (26%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKAD------VKWFKDGQEIKTS-------KKVTIE 375
++ + ++ L + + + W + G+ + +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 376 KKGTIRK-----------LLIRNISVHDEGEYTCSL---PDQETSAELNV-VELPPEISV 420
K+ L + + V DEG YTC P S ++ + V P+ +
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 421 PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQ---KLIIF 475
+Q V+++ + T G A + W+ D + + V + G I+
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 476 SAGLEDAGEYSCRV---GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
+ D +C+V + LTV P
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP-------------------------- 216
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIV 591
+ I ++ + L +++P P
Sbjct: 217 -------------------------PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYN 251
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
W PL P + +I + + TN LG+ V V
Sbjct: 252 WSTTMGPL---PPFAVAQGAQLLIRPV----DKPINTTLICNVTNALGARQAELTVQV 302
Score = 58.2 bits (140), Expect = 3e-09
Identities = 35/333 (10%), Positives = 70/333 (21%), Gaps = 115/333 (34%)
Query: 444 ALVKWYKDGKEIA-----------FSENVTLSIDGKKQK-------LIIFSAGLEDAGEY 485
+ + W + G+ + +SE+ L + L +F +ED G Y
Sbjct: 35 SQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94
Query: 486 SCRV--GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLN 543
+C G + L V A
Sbjct: 95 TCLFVTFPQGSRSVDIWLRVLAK------------------------------------- 117
Query: 544 LFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSS 602
P ++ + + P I W + + ++
Sbjct: 118 ---------------PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162
Query: 603 PKKREIFDGENIILEL--KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
+ G + L S+ D + +E V + V I
Sbjct: 163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSI- 221
Query: 661 SIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA 720
+ + ++
Sbjct: 222 --------------------------------------SGYDNNWYLGQNEATLTCDARS 243
Query: 721 LPPPKA-EWTVNGTVIVPSKRVKGKAEFIKKLD 752
P P W+ + P +G I+ +D
Sbjct: 244 NPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVD 276
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 96.2 bits (240), Expect = 4e-24
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 164
G P ++ ++SI EG + +V G P+P V WY +G+ ++ + I SEK
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
H+L D G Y+ N+ G L+V E
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 93.9 bits (234), Expect = 3e-23
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKN 286
G P ++ ++SI EG + +V G P+P V WY +G+ ++ + I SEK
Sbjct: 1 GAMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
H+L D G Y+ N+ G L+V
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 82.8 bits (205), Expect = 2e-19
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 614
P FI+ E ++ E R+ KV PAP + W+ N + + S + I + +
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 615 I-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
L + +DAG Y VA N G AT ++ V ++
Sbjct: 62 HSLIFEVV-RASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
Score = 72.4 bits (178), Expect = 1e-15
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDMHSY 70
PP F + + + +E ++ ++ +P PD+ WY NG +Q D + + +HS
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS- 63
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEA 98
+ + ++ + G Y VAKNR GEA
Sbjct: 64 ---LIFEVVRASDAGAYACVAKNRAGEA 88
Score = 70.8 bits (174), Expect = 4e-15
Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE-KKGTIRKLLI 385
FI+ +++ + E ++ +V+ DV W+ +G+ +++ + + + L+
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIF 66
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVE 413
+ D G Y C + + +L+V+
Sbjct: 67 EVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 65.8 bits (161), Expect = 2e-13
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
PP +++ + + +++ G V WY +G+ + + + + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 472 LIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEA 505
LI DAG Y+C G+ L V A
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 38.8 bits (91), Expect = 6e-04
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
FI+ +++ + E ++ +V+ DV W+ N ++
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ 47
Score = 33.1 bits (76), Expect = 0.071
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 698 PP----PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
PP P + + +G +++ + LP P W +NG + K
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHK 53
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 100 bits (249), Expect = 4e-24
Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 22/211 (10%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
+ V EN + L P + W + + V+
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 73 IV----TIKSIKKREEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
T S+ +++ G YT + G+ ++ I + V PS S+T
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL----VPPSKPTISVPSSVT 117
Query: 127 EGESAVLSVQVG-GEPSPKVEWYKDGKLI-----------KDRQITSEKNTHTLTLIQCS 174
G AVL+ G P + W+KDG + + T + + L +
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 175 TKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
D G Y + N GT + ++D E
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208
Score = 99.7 bits (248), Expect = 7e-24
Identities = 46/234 (19%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-----------DGKLIKDRQITS 161
K S+ DV + E ES L+ G SP+VEW + ++
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
++ +T + KD G Y+ V+ + G ++
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI----------------------- 97
Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG-GEPSPKVEWYKDGKLI---- 276
L V PS S+T G AVL+ G P + W+KDG +
Sbjct: 98 ---HLTVL----VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150
Query: 277 -------KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ T + + L + D G Y + N GT + ++D
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 90.0 bits (223), Expect = 1e-20
Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 25/208 (12%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK-- 382
K D++V E E+ L + V+W +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 383 ------LLIRNISVHDEGEYTC----SLPDQETSAELNV-VELPPEISVPLQDVKVSRDE 431
+ +++ D GEYTC +++ V +PP V+
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 432 KASFEIELTKGD--ALVKWYKDGKEIAFSE--------NVTLSIDGKKQKLIIFSAGLED 481
+A G + W+KDG + ++ N + +ID K LI D
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180
Query: 482 AGEYSCRVG-DTGDKESKATLTVEAPAV 508
+GEY C+ G ++A +
Sbjct: 181 SGEYYCQAQNGYGTAMRSEAAHMDAVEL 208
Score = 70.4 bits (172), Expect = 7e-14
Identities = 40/258 (15%), Positives = 62/258 (24%), Gaps = 76/258 (29%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQK-- 471
+ DV+V +E + G + V+W I
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 472 ------LIIFSAGLEDAGEYSCRV---GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPH 522
+ S +D GEY+C V G E LTV P
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP---------------- 104
Query: 523 LGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV 582
P +V L
Sbjct: 105 ------------------------------------PSKPTISVPSSVTIGNRAVLTCSE 128
Query: 583 -KASPAPSIVWFRNNKPLLSSPKK--------REIFDGENIILELKEADSETDAGDYKVV 633
SP WF++ +L++ K D ++ L + D+G+Y
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQ 187
Query: 634 ATNELGSATHGARVTVDV 651
A N G+A +D
Sbjct: 188 AQNGYGTAMRSEAAHMDA 205
Score = 52.7 bits (126), Expect = 7e-08
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 5/102 (4%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSD--- 66
+PP+ + P + L P + W+ +G + D +
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 67 -MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
+ + + + G Y A+N G A ++
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 50.7 bits (121), Expect = 3e-07
Identities = 24/195 (12%), Positives = 44/195 (22%), Gaps = 54/195 (27%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN----------NKPLLSSPKKREI 608
+ V E +I+L +P + W N + + R
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNH 668
F + + D G+Y + + E G + +
Sbjct: 62 FSSSG--ITFSSV-TRKDNGEYTCMVSEEGGQNYGEVSIHLT------------------ 100
Query: 669 VHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE-VRFKALPPPKAE 727
V P P V G + PP +
Sbjct: 101 ---------------------VLVPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYS 138
Query: 728 WTVNGTVIVPSKRVK 742
W +G ++ + K
Sbjct: 139 WFKDGISMLTADAKK 153
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 95.9 bits (239), Expect = 7e-24
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 165
+P L+ D+++ EG+ + +V G P+P + W DGK ++ + + E
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
H+L + +++D G Y+ TN+ G + L V +KE+ PS
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV------AAKESGPS 108
Score = 92.4 bits (230), Expect = 1e-22
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSEKNT 287
+P L+ D+++ EG+ + +V G P+P + W DGK ++ + + E
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
H+L + +++D G Y+ TN+ G + L V
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
Score = 85.5 bits (212), Expect = 3e-20
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
GS G P F++ + TV+E R+ KV P P + W + KP+ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 613 NII-LELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 652
+ L ++ S DAG Y +ATN G + + V +
Sbjct: 64 GVHSLIIEPVTSR-DAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 76.3 bits (188), Expect = 6e-17
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV-VFSDQSDM 67
G P F + + +E ++ ++ +P PDL W +G+P++ + ++ +
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
HS + I+ + R+ G+YT +A NR G+ + + V K PS
Sbjct: 66 HS----LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA-AKESGPS 108
Score = 71.2 bits (175), Expect = 3e-15
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIE-KKGTIRKLLI 385
F++ DL V+E + ++ +V+ D+ W DG+ ++ + ++ + L+I
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLII 70
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
++ D G YTC S EL V S
Sbjct: 71 EPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 64.3 bits (157), Expect = 8e-13
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSI-DGKKQK 471
P D+ V + + +++ G + W DGK + + + +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
LII DAG Y+C G L V A
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
S + F++ DL V+E + ++ +V+ D+ W + ++
Sbjct: 3 SGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVR 51
Score = 33.5 bits (77), Expect = 0.053
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P ++ V++G+ +++ + LP P W ++G + P K
Sbjct: 15 APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHK 57
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 101 bits (253), Expect = 1e-23
Identities = 50/350 (14%), Positives = 92/350 (26%), Gaps = 73/350 (20%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQIT--------- 160
+++ + G VL +V W K K
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 161 ------------SEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKE 207
T+ L + +D+G Y + T G ES NL V
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV------- 127
Query: 208 SKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPK 266
+ P + L + + V + G+P
Sbjct: 128 -----MAKPTNWIEGTQA---------------VLRAKKGQDDKVLVATCTSANGKPPSV 167
Query: 267 VEWYKDGK-LIKDRQITSEKNTHT----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
V W K + ++I + T T L+ + + V + + LN
Sbjct: 168 VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227
Query: 322 VDQGKAEF-IKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKG 378
V Q + E I+ D +R + L + ++ + W + +
Sbjct: 228 V-QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ---NR 283
Query: 379 TIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQD 424
T+ I+ G Y C + + E+N+ E +
Sbjct: 284 TL--FFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE-AAALEHHHHH 330
Score = 95.2 bits (236), Expect = 2e-21
Identities = 52/371 (14%), Positives = 101/371 (27%), Gaps = 95/371 (25%)
Query: 317 AANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKK 371
+ + ++ ++ D + + VL + V W K K +
Sbjct: 5 TGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA 64
Query: 372 VTIEKKGTIRK------------------LLIRNISVHDEGEYTCSL-----PDQETSAE 408
+ G + + + + DEG Y C ++E+
Sbjct: 65 IYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLN 124
Query: 409 LNVVELPPEISVPLQDVKVSRDEKASFEIELT------KGDALVKWYKDGKEIAFSENVT 462
L V+ P Q V ++ + + T K ++V W K A + +
Sbjct: 125 LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR 184
Query: 463 LSIDGKKQ--KLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
+ + + +C V + TL V+ P VT+
Sbjct: 185 NPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE--------PEVTI 236
Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
F+ ++ ++L
Sbjct: 237 EG-------------------------------------------FDGNWYLQRMDVKLT 253
Query: 580 AKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638
K A+P + W N L + +N L K + + AG Y ATN +
Sbjct: 254 CKADANPPATEYHWTTLNGSLPKG------VEAQNRTLFFKGPINYSLAGTYICEATNPI 307
Query: 639 GSATHGARVTV 649
G+ + V +
Sbjct: 308 GTRSGQVEVNI 318
Score = 92.9 bits (230), Expect = 1e-20
Identities = 45/339 (13%), Positives = 89/339 (26%), Gaps = 62/339 (18%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD----LLWYYNGEPLQET--------DEV 59
P + +Y ++V L + W + ++
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 60 VFSDQSDMHSYVSI------VTIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPE 112
V + + ++ + + ++ +EGVY A G + + + V KP
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-KPT 132
Query: 113 KPSILEP--LHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGK-LIKDRQITSEKNTHT- 167
L + + V + G+P V W K + ++I + T T
Sbjct: 133 NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192
Query: 168 ---LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
L+ + + V + + LNV YEP+
Sbjct: 193 ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV-QYEPE------------------ 233
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITS 283
+E + L+ + P + W +
Sbjct: 234 ------------VTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ 281
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
N + G Y + TN GT +N+
Sbjct: 282 --NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
Score = 90.2 bits (223), Expect = 1e-19
Identities = 39/315 (12%), Positives = 73/315 (23%), Gaps = 48/315 (15%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQIT--------- 282
+++ + G VL +V W K K
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 283 ------------SEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNV----DQG 325
T+ L + +D+G Y + T G ES NL V
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKG--TIR 381
L + ++ + V + K + V W + +++ I
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 382 KLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
+ + + C + + S LNV P +
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 438 ELTKGD---ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTG 493
+ + W + + V AG Y C G
Sbjct: 255 K-ADANPPATEYHWTTLNGSL--PKGVEAQNR---TLFFKGPINYSLAGTYICEATNPIG 308
Query: 494 DKESKATLTVEAPAV 508
+ + + + A
Sbjct: 309 TRSGQVEVNITEAAA 323
Score = 57.1 bits (137), Expect = 8e-09
Identities = 39/370 (10%), Positives = 75/370 (20%), Gaps = 114/370 (30%)
Query: 406 SAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD-----ALVKWYKDGKEI----- 455
+ + P ++ + V W K
Sbjct: 5 TGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVA 64
Query: 456 AFSENVTLSIDGKKQK-------------LIIFSAGLEDAGEYSCRV--GDTGDKESKAT 500
++ ++ +S+ ++ + + LED G Y C TG++ES+
Sbjct: 65 IYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLN 124
Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
LTV A ++ L G + TC
Sbjct: 125 LTVMAKPTNWIE-GTQAVLRAKKGQDDKVLVA----------------TC---------- 157
Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK- 619
P + W K + R +I +
Sbjct: 158 -------------------TSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRL 198
Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPR 679
E + + + V
Sbjct: 199 VPSREAHQQSLACIVNYHMDRFKESLTLNVQY---------------------------- 230
Query: 680 QSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPS 738
P + + D+K+ + A PP WT +
Sbjct: 231 -------------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG 277
Query: 739 KRVKGKAEFI 748
+ + F
Sbjct: 278 VEAQNRTLFF 287
Score = 41.7 bits (97), Expect = 7e-04
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 15/113 (13%)
Query: 12 PPTFS-KKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHS 69
P + + + + +V L + A P + W L + E
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA---------Q 281
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHD 122
++ I G Y A N G + V + E ++ H
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT----EAAALEHHHHH 330
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 94.7 bits (236), Expect = 2e-23
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEK 163
G P I D+SI EG+ ++ GEP+P+V W G+ I + I +
Sbjct: 1 GPGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ TL ++ +D G Y++ + N+ G+ + N+++
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 94.7 bits (236), Expect = 2e-23
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEK 285
G P I D+SI EG+ ++ GEP+P+V W G+ I + I +
Sbjct: 1 GPGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ TL ++ +D G Y++ + N+ G+ + N+++
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 84.3 bits (209), Expect = 7e-20
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 612
PG P + ++ E + + P P + W + + S + R +
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
L + + + D G Y + NE GS + + +
Sbjct: 62 LTTLIIMDVQKQ-DGGLYTLSLGNEFGSDSATVNIHI 97
Score = 71.2 bits (175), Expect = 2e-15
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDM 67
GIPP + +E +T+ P P++ W G + ++ + D+
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ + I ++K++ G+YT+ N G + + +
Sbjct: 63 TT----LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 68.9 bits (169), Expect = 2e-14
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSI--DGKK 469
+PP+I D+ + + + T G+ V W G++I E I
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 470 QKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEA 505
LII +D G Y+ +G + G + + + +
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 68.5 bits (168), Expect = 3e-14
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSK--KVTIEKKGTIRKLL 384
+ D+ + E + + T + +V W G++I + + + IE + L+
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLI 66
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVEL 414
I ++ D G YT + +++ +
Sbjct: 67 IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 35.0 bits (81), Expect = 0.013
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKL 751
P I+ P + + +G+ L + F P P+ W+ G I ++ + E L
Sbjct: 4 IPPKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 752 DDLEVKE 758
L + +
Sbjct: 63 TTLIIMD 69
Score = 35.0 bits (81), Expect = 0.013
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ D+ + E + + T + +V W I
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIH 47
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 96.3 bits (239), Expect = 8e-23
Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT------------------ 287
+ E + +L V WYK D++I
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 288 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKKLDDLEVKERENAV 345
+L + KD G Y++ +T++ A +V Q + ++ + VKE ++
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 346 LEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL----- 400
L A+++W + Q ++ ++++T+ + L I I D GEY C +
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVS 187
Query: 401 PDQETSAELNVVELPPEIS 419
+ S +L+++ P
Sbjct: 188 VRRSNSIKLDIIF-DPHHH 205
Score = 85.5 bits (211), Expect = 4e-19
Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 337 EVKERENAVLEVEVTS-DKADVKWFKDGQEIKT-------------------SKKVTIEK 376
+V E N +L V W+K S + I
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 377 KGTIRKLLIRNISVHDEGEYTCSLPD-----QETSAELNVVELPPEISVPLQDVKVSRDE 431
G+ LL + I++ D G YT + D + + +V + + + + + V +
Sbjct: 70 NGS---LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD 126
Query: 432 KASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
+ A ++W + + + +E +TLS + L I EDAGEY C + +
Sbjct: 127 SVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISN 184
Query: 492 T-GDKESK-ATLTVEAP 506
+ S L +
Sbjct: 185 PVSVRRSNSIKLDIIFD 201
Score = 81.6 bits (201), Expect = 1e-17
Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 19/195 (9%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS------DMHSYVSIV 74
P E++ V L V + + WY + + F S +S I+
Sbjct: 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 75 ------TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ I ++ GVYT+ + +P + + + ++ E
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL--QVTNTTVKEL 125
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
+S L+ ++W + + ++ +R S+ N L + +D G Y +++
Sbjct: 126 DSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN-SILRIDPIKREDAGEYQCEIS 183
Query: 187 NKEGTVESA-ANLNV 200
N S L++
Sbjct: 184 NPVSVRRSNSIKLDI 198
Score = 79.3 bits (195), Expect = 6e-17
Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 54/221 (24%)
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT------------------ 165
+ E + +L V WYK D++I
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 166 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
+L + KD G Y++ +T++ A +
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT----------- 118
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQIT 282
+ ++ E +S L+ ++W + + ++ +R
Sbjct: 119 -------------------NTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTL 158
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
S+ N L + +D G Y +++N S L++
Sbjct: 159 SQNN-SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 56.6 bits (136), Expect = 3e-09
Identities = 36/272 (13%), Positives = 69/272 (25%), Gaps = 82/272 (30%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQK---- 471
E+++ +V+ D + WYK E +
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 472 ------------LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
L+ ++D G Y+ + D + ++AT+
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQ------------ 108
Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
+ TVKE ++ L
Sbjct: 109 -------------------------------------PVTQPFLQVTNTTVKELDSVTLT 131
Query: 580 AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 639
+I W N++ L + R N IL + E DAG+Y+ +N +
Sbjct: 132 CLSN-DIGANIQWLFNSQSLQLTE--RMTLSQNNSILRIDPIKRE-DAGEYQCEISNPVS 187
Query: 640 SAT-HGARVTVDVEKVGRPPINSIDIDRNHVH 670
+ ++ + P +H H
Sbjct: 188 VRRSNSIKLDIIF-----DP------HHHHHH 208
Score = 31.9 bits (72), Expect = 0.49
Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 58/190 (30%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS------SPKKREIFDGE---------- 612
V E + L+ + W++ N + P F G+
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
N L + + D G Y + T+E
Sbjct: 70 NGSLLFQMI-TMKDMGVYTLDMTDENY--------------------------------- 95
Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG 732
+ T+ V V VK+ + + + +W N
Sbjct: 96 -------RRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNS 147
Query: 733 TVIVPSKRVK 742
+ ++R+
Sbjct: 148 QSLQLTERMT 157
Score = 29.2 bits (65), Expect = 3.7
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 753 DLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
+ VKE ++ L A+++W N+ ++
Sbjct: 119 NTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQ 151
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 98.2 bits (244), Expect = 1e-22
Identities = 37/309 (11%), Positives = 78/309 (25%), Gaps = 56/309 (18%)
Query: 25 EENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREE 84
+S L ++W + + + S++T+ ++ +
Sbjct: 13 NVSSTFVLTCS----GSAPVVWERMSQEPPQEMAKAQDGT-----FSSVLTLTNLTGLDT 63
Query: 85 GVYTVVAKNREGEAKMD-IPVKVNTGKPEKPSILEPLHD--VSITEGESAVLSVQVGGEP 141
G Y + G + + + P + + + +TE + +V P
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-P 122
Query: 142 SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
V ++ + + + + Y K T + V+S A
Sbjct: 123 QLVVTLHEKKGDVALPVPYDHQRGFSGIF------EDRSYICKTTIGDREVDSDAYYVY- 175
Query: 202 PYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG 261
+ S V + + +GE+ L V G
Sbjct: 176 -------RLQVSSINVSVNAV---------------------QTVVRQGENITLMCIVIG 207
Query: 262 EPSPKVEWYKDGKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTNKEGT 313
EW K L + +D G Y+ VT
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267
Query: 314 VESAANLNV 322
+ +N+
Sbjct: 268 HQDEKAINI 276
Score = 90.1 bits (223), Expect = 6e-20
Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 36/288 (12%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--TLTLIQC 295
+ P ++ + + VL+ V W + + ++ T LTL
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58
Query: 296 STKDKGRYSVKVTNKEGTVESAA---NLNVDQGKAEFIKKLDD---LEVKERENAVLEVE 349
+ D G Y + G + V F+ + + + E +
Sbjct: 59 TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR 118
Query: 350 VTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--SLPDQETSA 407
VT + V + ++ ++ + ++ Y C ++ D+E +
Sbjct: 119 VTDPQLVVTLHEKKGDVALPVPYDHQRGFSGI---------FEDRSYICKTTIGDREVDS 169
Query: 408 E----LNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENV 461
+ + +SV V + E + G+ +W KE
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCI-VIGNEVVNFEWTYPRKESGRLVEP 228
Query: 462 TLSIDGKKQK-----LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
L I SA LED+G Y+C V ++ D + + + +
Sbjct: 229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 85.1 bits (210), Expect = 2e-18
Identities = 51/354 (14%), Positives = 101/354 (28%), Gaps = 89/354 (25%)
Query: 334 DDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
+L + VL + A V W + QE + + L + N++ D
Sbjct: 8 PELVLNVSSTFVLTCSGS---APVVWERMSQEPP-QEMAKAQDGTFSSVLTLTNLTGLDT 63
Query: 394 GEYTCSL-----PDQETSAELNV-VELPPEISVPL----QDVKVSRDEKASFEIELTKGD 443
GEY C+ + + L + V P +P + ++ + + +T
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQ 123
Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLT 502
+V ++ ++A +G+ + Y C+ + +S A
Sbjct: 124 LVVTLHEKKGDVALPVPYDHQR---------GFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Query: 503 VEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFI 562
++++SS ++ V
Sbjct: 175 Y-------------------------RLQVSSINVSVNA--------------------- 188
Query: 563 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-----ILE 617
+ V++ I LM V + + W K + F + IL
Sbjct: 189 ---VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILH 245
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHH 671
+ A+ E D+G Y T + + + V V H HH
Sbjct: 246 IPSAELE-DSGTYTCNVTESVNDHQDEKAINITV--VESGHH--------HHHH 288
Score = 75.9 bits (186), Expect = 3e-15
Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 23/198 (11%)
Query: 16 SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVT 75
+ ++ E +E+T+ R V P+ + + +
Sbjct: 99 DAEELFIFLTEITEITIPCR-VTDPQLVVTLHEKKGDVA-------------LPVPYDHQ 144
Query: 76 IKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSV 135
E+ Y + E D + + +GE+ L
Sbjct: 145 RGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNA-VQTVVRQGENITLMC 203
Query: 136 QVGGEPSPKVEWYKDGKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTN 187
V G EW K L + +D G Y+ VT
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTE 263
Query: 188 KEGTVESAANLNVDPYEP 205
+ +N+ E
Sbjct: 264 SVNDHQDEKAINITVVES 281
Score = 52.8 bits (126), Expect = 1e-07
Identities = 36/321 (11%), Positives = 72/321 (22%), Gaps = 108/321 (33%)
Query: 417 EISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF 475
++ P ++ ++ LT G A V W + +E E L +
Sbjct: 2 VVTPPGPELVLNVSS----TFVLTCSGSAPVVWERMSQEPP-QEMAKAQDGTFSSVLTLT 56
Query: 476 SAGLEDAGEYSCRV----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVE 531
+ D GEY C G D+ + + V P V FL +
Sbjct: 57 NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFI----------- 105
Query: 532 LSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIV 591
+ E I + +V P +
Sbjct: 106 -------------------------------------FLTEITEITIPCRV-TDPQLVVT 127
Query: 592 WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ +D + + + Y T A +
Sbjct: 128 LHEKKGDVALP----VPYDHQRGFSGI------FEDRSYICKTTIGDREVDSDAYYVYRL 177
Query: 652 EKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGED 711
+ ++ ++ + +V++GE+
Sbjct: 178 Q----VSSINVSVN-----------------------------------AVQTVVRQGEN 198
Query: 712 LKIEVRFKALPPPKAEWTVNG 732
+ + EWT
Sbjct: 199 ITLMCIVIGNEVVNFEWTYPR 219
Score = 48.9 bits (116), Expect = 3e-06
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
L+ S + +TL ++ + W Y + E V D
Sbjct: 176 RLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLD 235
Query: 67 MHSYV-SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
M ++ SI+ I S + + G YT + + + + +
Sbjct: 236 MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 92.0 bits (229), Expect = 1e-22
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLT 169
KP IL + I G + L V G P P W + ++ +T ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
D G Y +KV N+ G E+ + V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 92.0 bits (229), Expect = 1e-22
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD---RQITSEKNTHTLT 291
KP IL + I G + L V G P P W + ++ +T ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
D G Y +KV N+ G E+ + V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 80.4 bits (199), Expect = 1e-18
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
P + + +K T L +P P+ W + +P+ +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
A D+G+YK+ NELG V V
Sbjct: 62 FPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
Score = 72.4 bits (178), Expect = 8e-16
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ P ++ + + LEV + P+P W E++ +S S
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS- 59
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ S K+ + G Y + KN GE + V V
Sbjct: 60 ---IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 69.3 bits (170), Expect = 1e-14
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQK 471
L P+I + +K+ + E++ G W A + + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVE 504
+ SA D+G Y +V + G+ E+ + V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 65.4 bits (160), Expect = 2e-13
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
K + + +++K LEV+ W + ++ ++ K + +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNV 411
+ D G Y L + E E+ V
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 45.4 bits (108), Expect = 2e-06
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P I + +K G +EV F P P A WTV + + +
Sbjct: 2 KPKILTASRK-IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL 50
Score = 32.7 bits (75), Expect = 0.080
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 744 KAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
K + + +++K LEV+ W +S
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA 44
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 91.6 bits (228), Expect = 2e-22
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTL 170
P+I L + + + GES +S G P P++ W+KD + + D I + LT+
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 171 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE 210
+ +D+G Y+ + + G + A ++ + K + E
Sbjct: 69 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLE 108
Score = 88.2 bits (219), Expect = 4e-21
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTL 292
P+I L + + + GES +S G P P++ W+KD + + D I + LT+
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 293 IQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEF 329
+ +D+G Y+ + + G + A + +G E
Sbjct: 69 RRVRKEDEGLYTCQACSVLGCAKVEAFFII-EGAQEK 104
Score = 78.9 bits (195), Expect = 6e-18
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
++ E D G Y A + LG A A ++
Sbjct: 68 IRRVRKE-DEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 70.4 bits (173), Expect = 7e-15
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 7 ILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD 66
+LE + PT + + + + P P ++W+ + E L E +V D
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--- 61
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
+TI+ ++K +EG+YT A + G AK++ + G EK ++
Sbjct: 62 ---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE-GAQEKTNL 107
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 408 ELNVVEL-PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLS 464
+L V+E P I+ L++ S E + G+ + W+KD + + + L
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
+ L I ED G Y+C+ G + +A +E
Sbjct: 61 DGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 65.4 bits (160), Expect = 4e-13
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
L++ E+ + + + + WFKD + + + ++ R L IR
Sbjct: 12 TITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIR 69
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEISV 420
+ DEG YTC L + A + + ++
Sbjct: 70 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
Score = 32.3 bits (74), Expect = 0.13
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 740 RVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ L++ E+ + + + + WFK+N +
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 52
Score = 30.0 bits (68), Expect = 0.89
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
AP I GE +++ PPP+ W + +V +
Sbjct: 7 ERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 58
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 98.3 bits (244), Expect = 2e-22
Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 19/224 (8%)
Query: 206 KESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP 265
+E P + + P++ + + S+ G+ +L QV G
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE 188
Query: 266 KVEWYK-DGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNVD 323
+ W + + + + LTL ++ ++ + N G E + +NV
Sbjct: 189 QAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV- 247
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK 382
F + E + + V ++W +G + + + E
Sbjct: 248 ----SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 303
Query: 383 -------LLIRNISVHDEGEYTC----SLPDQETSAELNVVELP 415
L + + + G YT S ++ P
Sbjct: 304 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 92.5 bits (229), Expect = 2e-20
Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 23/198 (11%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVS 72
PT + + +V L ++ W T +S +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-----VMKSGGLPSLG 213
Query: 73 IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAV 132
+ T A+N G A++ + V V S + + E
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV--------SFPASVQLHTAVEMHHWC 265
Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH----------TLTLIQCSTKDKGRYS 182
+ V G+P+P + W +G ++ + + L L Q + + G Y+
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 183 VKVTNKEGTVESAANLNV 200
+ N G ++
Sbjct: 326 LLAANPFGQASASIMAAF 343
Score = 91.3 bits (226), Expect = 6e-20
Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 48/223 (21%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNTHTLTL 170
P++ + + S+ G+ +L QV G + W + + + + LTL
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 171 IQCSTK-DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
++ ++ + N G E + +NV
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV----------------------------- 247
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH- 288
S + + E + V G+P+P + W +G ++ + +
Sbjct: 248 -------SFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP 300
Query: 289 ---------TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L L Q + + G Y++ N G ++
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343
Score = 72.5 bits (177), Expect = 9e-14
Identities = 23/195 (11%), Positives = 46/195 (23%), Gaps = 24/195 (12%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI-KTSKKVTIEKKGTIRKLLI 385
++ + V ++ +L +V W E T K + L
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--TLA 217
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
S + TC + E S ++NV Q +
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-----QLHTAVEMHHWCIPFSVD- 271
Query: 442 GD--ALVKWYKDGKEIAFSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRV-GD 491
G ++W +G + + + L + + G Y+
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 492 TGDKESKATLTVEAP 506
G +
Sbjct: 332 FGQASASIMAAFMDN 346
Score = 61.7 bits (149), Expect = 3e-10
Identities = 31/244 (12%), Positives = 56/244 (22%), Gaps = 69/244 (28%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEI-AFSENVTLSIDGKKQKL 472
P + V + + V + + +G L W E A
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQ-VEGRGLEQAGWILTELEQSATVMKSGGLPSLGL--T 215
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
+ + +C + +G A V++
Sbjct: 216 LANVTSDLNRKNVTCWAEN------------------------------DVGRAEVSVQV 245
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
F + T E + V PAPS+ W
Sbjct: 246 -------------------------NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280
Query: 593 FRNNKPLLSSPKKRE-------IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
N L + + L L + + + G+Y ++A N G A+
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQASASI 339
Query: 646 RVTV 649
Sbjct: 340 MAAF 343
Score = 60.9 bits (147), Expect = 5e-10
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 616
P + +V + L +V+ W ++ K ++ L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL--PSLGL 214
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
L S+ + + A N++G A V V+V P + +HH
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAE--VSVQVNV----SFPASVQLHTAVEMHHW 264
Score = 54.4 bits (130), Expect = 7e-08
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
+ +F + A E + + P P L W +NG L ET + +
Sbjct: 245 VNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 304
Query: 71 V---SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP 114
+ + G YT++A N G+A I + P
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM----DNP 347
Score = 28.9 bits (64), Expect = 6.4
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 699 PPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
P V G+D+ + + + +A W + +
Sbjct: 163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT 202
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 90.5 bits (225), Expect = 7e-22
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT- 287
P + + EG+S L Q+ P PK+ W ++ ++++ DR + NT
Sbjct: 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 288 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIK 331
TL + + KD G Y+V N+ G L+V +
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV-TARPNQTL 115
Score = 90.1 bits (224), Expect = 9e-22
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK---DRQITSEKNT- 165
P + + EG+S L Q+ P PK+ W ++ ++++ DR + NT
Sbjct: 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 166 -HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
TL + + KD G Y+V N+ G L+V P P
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV--------TARPNQTLP 116
Score = 82.8 bits (205), Expect = 3e-19
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 555 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DGE 612
+AP+FI + + K V E +++L ++ A P P + W RNN+ + + + ++ +
Sbjct: 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ L +K+ + + DAG Y V A NE G T R+ V
Sbjct: 72 RVTLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 69.3 bits (170), Expect = 2e-14
Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS--KKVTIEKKGTIRKLL 384
FI K +V E ++ LE ++++ + W ++ + ++ + + + LL
Sbjct: 17 MFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLL 76
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP 421
I++++ D G YT + L+V P ++P
Sbjct: 77 IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA-RPNQTLP 116
Score = 66.7 bits (163), Expect = 2e-13
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDE--VVFSDQSDMHS 69
P F K + E V LE ++ A+P P L W N E +Q + ++ D + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
+ IK + K++ G YTV A N G + + V +P+ P
Sbjct: 75 ----LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT----ARPNQTLP 116
Score = 62.4 bits (152), Expect = 5e-12
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSEN--VTLSIDG 467
+ P Q KV + E +++ + W ++ + + F+ + +
Sbjct: 12 HKRAPMFIYKPQSKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 468 KKQKLIIFSAGLEDAGEYSCR-VGDTGDKESKATLTVEAP 506
+ L+I +DAG Y+ V + G L V A
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 36.6 bits (85), Expect = 0.005
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
S K FI K +V E ++ LE ++++ + W +NN +++
Sbjct: 9 SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQ 57
Score = 32.4 bits (74), Expect = 0.13
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
+ AP+ P V +G+ +K+E + A+PPPK W N ++ +
Sbjct: 8 HSHEHKRAPMFIYKPQS-KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 86.6 bits (215), Expect = 8e-21
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 238 ILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK---DRQITSEKNTHTLTLI 293
+ + EG ++ +V WY + ++ +IT E L +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE 328
+ D G Y KV N G S A L V +G E
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFV-KGVRE 97
Score = 86.2 bits (214), Expect = 1e-20
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK---DRQITSEKNTHTLTLI 171
+ + EG ++ +V WY + ++ +IT E L +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ D G Y KV N G S A L V
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 78.1 bits (193), Expect = 8e-18
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENIIL 616
+ + +E G ++ + K++ + + W+ + L +S K ++ IL
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 617 ELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+K+ D G Y+ N+ G + A + V
Sbjct: 61 YVKDITKL-DDGTYRCKVVNDYGEDSSYAELFV 92
Score = 74.7 bits (184), Expect = 2e-16
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 327 AEFIKKLDDLEVKERENAVLEVEVT--SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL 384
A ++ +E + ++ V W+ ++++ S+K I + + L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 385 IRNISVHDEGEYTC----SLPDQETSAELNV 411
+++I+ D+G Y C + + AEL V
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 70.4 bits (173), Expect = 4e-15
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 418 ISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIF 475
+S + + ++ D V WY +++ SE ++ + L +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 476 SAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
D G Y C+V D G+ S A L V+
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
Score = 59.6 bits (145), Expect = 3e-11
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 15 FSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
S + EE V ++ + + WY+ L+ +++ + + +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI---- 59
Query: 74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ +K I K ++G Y N GE + V
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 36.5 bits (85), Expect = 0.004
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 745 AEFIKKLDDLEVKERENAVLEVEVT--SDKADVKWFKNNSLIK 785
A ++ +E + ++ V W+ ++
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE 44
Score = 31.9 bits (73), Expect = 0.18
Identities = 4/51 (7%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPP-KAEWTVNGTVIVPSKRVK 742
++ + ++G +K + + + W + S++ +
Sbjct: 1 GAMV-SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYE 50
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 88.2 bits (218), Expect = 5e-20
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 30/209 (14%)
Query: 20 KPVYAEENSEVTLEVRLVAVPEP----DLLWYYNGEPLQETDEVVFS------------- 62
+ + + L + PE D+ W + Q D+V+
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 63 -------DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+D+ S + + + +++ + G Y K G A + V KPS
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL----VKPS 123
Query: 116 ILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQC 173
D S G L + G + EW K +E + +++
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDP 202
S++ G YS V N+ G+ + L+V P
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 84.4 bits (208), Expect = 1e-18
Identities = 39/241 (16%), Positives = 63/241 (26%), Gaps = 65/241 (26%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQITS--------- 161
SI P + +GE+A L + P + +EW +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 162 ------------------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY 203
+ ++ + D G Y KV G L V
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL-- 119
Query: 204 EPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGE 262
KPS D S G L + G
Sbjct: 120 ------------------------------VKPSGTRCFVDGSEEIGNDFKLKCEPKEGS 149
Query: 263 PSPKVEWYKDG-KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
+ EW K +E + +++ S++ G YS V N+ G+ + L+
Sbjct: 150 LPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Query: 322 V 322
V
Sbjct: 210 V 210
Score = 79.7 bits (196), Expect = 5e-17
Identities = 33/214 (15%), Positives = 57/214 (26%), Gaps = 40/214 (18%)
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLIKDRQITS--------- 283
SI P + +GE+A L + P + +EW +
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 284 ------------------EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQG 325
+ ++ + D G Y KV G L V
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV-LV 120
Query: 326 KAEFIKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKL 383
K + D + + L+ E +W K E + +
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--I 178
Query: 384 LIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
++N S G Y+C + + L+VV
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 76.3 bits (187), Expect = 6e-16
Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 39/210 (18%)
Query: 334 DDLEVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKKVTIEKKGTIRK------ 382
+E + E A L + T D ++W + + +V I G
Sbjct: 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD 67
Query: 383 ------------------LLIRNISVHDEGEYTCSLPD----QETSAELNVVELPPEISV 420
+ + N+ + D G Y C + L V+ P +
Sbjct: 68 LKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTR 126
Query: 421 PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG 478
D + E +G +W K + + + +A
Sbjct: 127 CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS--PVISVKNAS 184
Query: 479 LEDAGEYSCRVG-DTGDKESKATLTVEAPA 507
E +G YSC V G + L V P+
Sbjct: 185 SEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214
Score = 68.9 bits (168), Expect = 3e-13
Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 86/264 (32%)
Query: 417 EISVPLQDVKVSRDEKASFEIELT-----KGDALVKWYKDGKEIAFSENVTLSIDGKKQK 471
I+ P Q ++ ++ E A + T +G ++W + + V + G K
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 472 ------------------------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAP 506
+ + + L D G Y C+V G K LTV
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 507 AVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFE 566
PS T
Sbjct: 122 --------PSGTRCF--------------------------------------------V 129
Query: 567 EKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
+ + + +L + K S W + + + + + ++ +K A S
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT--PWLAEMTSPVISVKNA-SSE 186
Query: 626 DAGDYKVVATNELGSATHGARVTV 649
+G Y N +GS R+ V
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 47.0 bits (111), Expect = 6e-06
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P+ ++ E ++ L+ W + + S
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS----- 175
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
++++K+ G Y+ +NR G + + + V
Sbjct: 176 -PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Score = 31.2 bits (70), Expect = 0.85
Identities = 17/110 (15%), Positives = 26/110 (23%), Gaps = 27/110 (24%)
Query: 569 TVKEKGTIRLMAKVKASPAP----SIVWFRNNKPLLSSPKKREIFDGENIILELKEADS- 623
+ T L K SP I W + + ++ G+ I
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 624 ----------------------ETDAGDYKVVATNELGSATHGARVTVDV 651
+D G Y+ G A +TV V
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV 120
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 85.3 bits (211), Expect = 2e-19
Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 52/216 (24%)
Query: 111 PEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTL 168
P K + LEP +++ + +S L+ Q P ++W+ +G LI +T
Sbjct: 2 PPKAVLKLEPP-WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-------THTQPS 53
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
+ + D G Y+ + ++ +L V
Sbjct: 54 YRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE------------------------- 86
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNT 287
+L+ H EGE+ +L +P KV ++++GK K
Sbjct: 87 -------WLVLQTPHLE-FQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----LD 133
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNV 322
T ++ Q + G Y S + V
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 80.2 bits (198), Expect = 1e-17
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 233 PEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTL 290
P K + LEP +++ + +S L+ Q P ++W+ +G LI +T
Sbjct: 2 PPKAVLKLEPP-WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-------THTQPS 53
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEV 350
+ + D G Y+ + ++ +L V + + LE +E E +L
Sbjct: 54 YRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEW--LVLQTPHLEFQEGETIMLRCHS 109
Query: 351 TSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS 399
DK V +F++G+ K S I + G+Y C+
Sbjct: 110 WKDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCT 152
Score = 79.9 bits (197), Expect = 2e-17
Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 28/177 (15%)
Query: 335 DLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
+ V + ++ L + ++WF +G I T + + +D
Sbjct: 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNND 62
Query: 393 EGEYTCSLPDQETSAE--LNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKW 448
GEYTC S L V+ + P + + E K L V +
Sbjct: 63 SGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEG--ETIMLRCHSWKDKPLVKVTF 120
Query: 449 YKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKA-TLTV 503
+++GK FS I A +G+Y C SK T+TV
Sbjct: 121 FQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 77.6 bits (191), Expect = 1e-16
Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 31/194 (15%)
Query: 12 PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMH 68
PP K +P + + VTL + PE D + W++NG +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------- 50
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ G YT + + V +L+ H EG
Sbjct: 51 ---QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFE------WLVLQTPHLE-FQEG 100
Query: 129 ESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
E+ +L +P KV ++++GK K T ++ Q + G Y
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----LDPTFSIPQANHSHSGDYHCTGNI 155
Query: 188 KEGTVESAA-NLNV 200
S + V
Sbjct: 156 GYTLFSSKPVTITV 169
Score = 59.1 bits (143), Expect = 2e-10
Identities = 37/239 (15%), Positives = 65/239 (27%), Gaps = 77/239 (32%)
Query: 416 PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
+ + + V +++ + + + ++W+ +G I Q
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGN----------LIPTHTQPSY 54
Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
F A D+GEY+C+ G T + LTV V PHL
Sbjct: 55 RFKANNNDSGEYTCQTGQTSLSDP-VHLTVLFE--------WLVLQTPHL---------- 95
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVW 592
+E TI L P + +
Sbjct: 96 -----------------------------------EFQEGETIMLRCHSWKDKPLVKVTF 120
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
F+N K S + +A + + +GDY + VT+ V
Sbjct: 121 FQNGKSQKFSHLDPT--------FSIPQA-NHSHSGDYHCTGNIGYTLFSS-KPVTITV 169
Score = 41.7 bits (98), Expect = 2e-04
Identities = 25/174 (14%), Positives = 42/174 (24%), Gaps = 58/174 (33%)
Query: 567 EKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
V ++ ++ L + SP SI WF N + + + F +
Sbjct: 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA-----------NNN 61
Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685
D+G+Y S V +
Sbjct: 62 DSGEYTCQTGQTSLSDP----VHLT----------------------------------- 82
Query: 686 VEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP-KAEWTVNGTVIVPS 738
V ++ P E GE + + P K + NG S
Sbjct: 83 ----VLFEWLVLQTPHLEFQE--GETIMLRCHSWKDKPLVKVTFFQNGKSQKFS 130
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 83.1 bits (205), Expect = 2e-19
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 325 GKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTS----------KKVTI 374
G A + L+D++V + E+AV +++ S WF +G+E+K++ + I
Sbjct: 7 GTARLVAGLEDVQVYDGEDAVFSLDL-STIIQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 375 EKKGTIRKLLIRNISVHDEG-EYTCSLPDQETSAELNVVELPP 416
E+KG +L++ + D G S P + SA L + E
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTIQESSG 108
Score = 76.2 bits (187), Expect = 6e-17
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE----------NVTLS 464
+ L+DV+V E A F ++L+ W+ +G+E+ +E +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLST-IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66
Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
G + +LI+ + +D+G + A LT++
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVGFS--CPGVQDSAALTIQES 106
Score = 60.0 bits (145), Expect = 3e-11
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 19/107 (17%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------------QI 159
++ L DV + +GE AV S+ + + W+ +G+ +K +I
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-DPYEP 205
+ H L L +D G V V+ +A L + + P
Sbjct: 66 EQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTIQESSGP 109
Score = 59.2 bits (143), Expect = 5e-11
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-------------QI 281
++ L DV + +GE AV S+ + + W+ +G+ +K +I
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTI--IQGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ H L L +D G V V+ +A L +
Sbjct: 66 EQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTI 103
Score = 45.0 bits (106), Expect = 6e-06
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 738 SKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
S G A + L+D++V + E+AV +++ S WF N +K
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSLDL-STIIQGTWFLNGEELK 48
Score = 37.7 bits (87), Expect = 0.002
Identities = 11/98 (11%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ V + + + L + + W+ NGE L+ + + + +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 72 S------IVTIKSIKKREEGVY-TVVAKNREGEAKMDI 102
+ + ++K ++ G + A + I
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTI 103
Score = 33.4 bits (76), Expect = 0.062
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 553 GSPGQAP--LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF- 609
GS G + + E+ V + + S WF N + L S+ + ++
Sbjct: 1 GSSGSSGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTWFLNGEELKSNEPEGQVEP 58
Query: 610 ---------DGENIILELKEADSETDAGDYKVVATNELGSAT 642
G L L + SA
Sbjct: 59 GALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100
Score = 30.0 bits (67), Expect = 0.98
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWL 542
+ + L V V DA F ++LS+ IQ W
Sbjct: 6 SGTARLVAGLEDVQ-VYDGEDAVFSLDLST-IIQGTWF 41
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 84.2 bits (208), Expect = 5e-19
Identities = 36/215 (16%), Positives = 63/215 (29%), Gaps = 50/215 (23%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTHTLT 169
P+KP + I +GE+ L+ +W+ +G L + + +L
Sbjct: 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-------ETNSSLN 54
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVN 229
++ +D G Y + + L V VV
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSDWLL------LQASAEVV--------- 97
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
EG+ L KV +YKDG+ +K H
Sbjct: 98 ------------------MEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENH 134
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
+++ + +D G Y + ES N+ V
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 80.7 bits (199), Expect = 9e-18
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 24/178 (13%)
Query: 335 DLEVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
+ + EN L + KWF +G + + L I N D
Sbjct: 13 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFED 62
Query: 393 EGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYK 450
GEY C S + + + + V + + + V +YK
Sbjct: 63 SGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK 122
Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESK-ATLTVEAP 506
DG+ + + + + I +A +ED+G Y C D ES+ +TV
Sbjct: 123 DGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172
Score = 76.9 bits (189), Expect = 2e-16
Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 29/191 (15%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P S + VTL E W++NG +ET+
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------- 50
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
S + I + K + G Y + PV + +L+ + EG+
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQVNESE----PVYLEV--FSDWLLLQA-SAEVVMEGQPL 103
Query: 132 VLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
L KV +YKDG+ +K H +++ + +D G Y +
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 191 TVESA-ANLNV 200
ES N+ V
Sbjct: 159 DYESEPLNITV 169
Score = 50.7 bits (121), Expect = 2e-07
Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 77/238 (32%)
Query: 416 PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLI 473
P++S+ ++ + E + + KW+ +G + L
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS----------EETNSSLN 54
Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
I +A ED+GEY C+ + +E + L + +
Sbjct: 55 IVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQASA----------------- 94
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVW 592
+ V E + L + +++
Sbjct: 95 ----------------------------------EVVMEGQPLFLRCHGWRNWDVYKVIY 120
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTV 649
+++ + L EN + + A + D+G Y +TV
Sbjct: 121 YKDGEALKYW--------YENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 34.1 bits (78), Expect = 0.092
Identities = 18/172 (10%), Positives = 34/172 (19%), Gaps = 58/172 (33%)
Query: 569 TVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
+ + + L S WF N + I + D+
Sbjct: 15 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVN-----------AKFEDS 63
Query: 628 GDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVE 687
G+YK S V
Sbjct: 64 GEYKCQHQQVNESEP-------------------------------------------VY 80
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPPKAEWTVNGTVIVPS 738
V + ++ V+ G+ L + K + +G +
Sbjct: 81 LEVFSDWLLLQASAEVVME--GQPLFLRCHGWRNWDVYKVIYYKDGEALKYW 130
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 85.1 bits (210), Expect = 2e-18
Identities = 44/315 (13%), Positives = 85/315 (26%), Gaps = 57/315 (18%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAV---PEPDLLWYYNGEPLQETDEVVFSDQSDM 67
+P T + P E +++ T+ L + E + + L T + +D
Sbjct: 2 LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTYGNDS 57
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITE 127
S + V++ + + T + V + + P+ L ++E
Sbjct: 58 FSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKPEVSE 112
Query: 128 GESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
G + + + L Q L L + +S T
Sbjct: 113 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---------LLLKATPEDNGRSFSCSATL 163
Query: 188 KEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSI 247
+ N L+V G P P + +
Sbjct: 164 EVAGQLIHKNQTR------------------------ELRVLYG-PRLDERDCP-GNWTW 197
Query: 248 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 307
E Q G P P+++ KDG + + +G Y +
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCLKDGTFP----------LPIGESVTVTRDLEGTYLCRA 247
Query: 308 TNKEGTVESAANLNV 322
+ +G V +NV
Sbjct: 248 RSTQGEVTREVTVNV 262
Score = 79.7 bits (196), Expect = 1e-16
Identities = 40/292 (13%), Positives = 81/292 (27%), Gaps = 48/292 (16%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHT 289
P ++ P + + + G +V + + +T ++ +
Sbjct: 4 ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFS 59
Query: 290 LTLIQCSTK---DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVL 346
T R + V + E+ + + L EV E +
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-YSFPAPNVILTKPEVSEGTEVTV 118
Query: 347 EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS------- 399
+ E K +G + G +LL++ + ++CS
Sbjct: 119 KCEA---HPRAKVTLNGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAG 167
Query: 400 -LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIE-LTKGD--ALVKWYKDGKEI 455
L + + EL V+ P + + E + G+ +K KDG
Sbjct: 168 QLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
Query: 456 AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
+ + G Y CR G+ + T+ V +P
Sbjct: 227 LPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
Score = 76.6 bits (188), Expect = 2e-15
Identities = 42/304 (13%), Positives = 73/304 (24%), Gaps = 86/304 (28%)
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR-NISVHDEGEYTC--SLPDQETSAELNV 411
A V Q + + VT K + TC L +Q V
Sbjct: 36 AQVHLALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 93
Query: 412 -VELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
+ P +V L +VS + + + + K +G V G +
Sbjct: 94 TIYSFPAPNVILTKPEVSEGTEVTVK---CEAHPRAKVTLNG--------VPAQPLGPRA 142
Query: 471 KLIIFSAGLEDAGEYSCRV-----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGD 525
+L++ + ++ +SC G K L V P + G+
Sbjct: 143 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG--------PRLDERDCPGN 194
Query: 526 ATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 585
T E M + +
Sbjct: 195 WT------------------------------------------WPENSQQTPMCQAWGN 212
Query: 586 PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 645
P P + ++ L + + + G Y A + G T
Sbjct: 213 PLPELKCLKDGTFPLPIGESVTV--------------TRDLEGTYLCRARSTQGEVTREV 258
Query: 646 RVTV 649
V V
Sbjct: 259 TVNV 262
Score = 71.6 bits (175), Expect = 6e-14
Identities = 36/317 (11%), Positives = 76/317 (23%), Gaps = 74/317 (23%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWYKDGKLIKDRQITSEKNTHT 167
P ++ P + + + G +V + + +T ++ +
Sbjct: 4 ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFS 59
Query: 168 LTLIQCSTK---DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
T R + V + E+ + + + P P V+
Sbjct: 60 AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF-----------PAPNVI---- 104
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE 284
L ++EG + + + L Q
Sbjct: 105 -----------------LTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ---- 143
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN----LNVDQG-KAEFIKKLDDLEVK 339
L L + +S T + N L V G + + +
Sbjct: 144 -----LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWP 198
Query: 340 ERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
E + + ++K KDG + ++ EG Y C
Sbjct: 199 ENSQQTPMCQAWGNPLPELKCLKDGTFP-------------LPIGESVTVTRDLEGTYLC 245
Query: 399 ----SLPDQETSAELNV 411
+ + +NV
Sbjct: 246 RARSTQGEVTREVTVNV 262
Score = 47.7 bits (113), Expect = 5e-06
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 12 PPTFSKKTKP--VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
P ++ P ENS+ T + P P+L +G E
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE----------- 231
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
++ + EG Y A++ +GE ++ V V
Sbjct: 232 ------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 44.3 bits (104), Expect = 6e-05
Identities = 39/329 (11%), Positives = 78/329 (23%), Gaps = 110/329 (33%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTK--GDALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
PP++ P + ++V ++ +A V + + + VT D K
Sbjct: 6 PPQLVSP-RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKA 62
Query: 473 II-FSAGLEDAGEYSCRVGD-TGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
+ +A E +C V +E+ T+T+ +
Sbjct: 63 SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF------------------------ 98
Query: 531 ELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSI 590
P + V E + + K +A P +
Sbjct: 99 ----------------------------PAPNVILTKPEVSEGTEVTV--KCEAHPRAKV 128
Query: 591 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
L + + +A E + + AT E+ T +
Sbjct: 129 TLNGVPAQPLGPRAQLLL-----------KATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
Query: 651 VEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPE-VLVKKG 709
+ V P +D P +
Sbjct: 178 LR-------------------------------------VLYGPRLDERDCPGNWTWPEN 200
Query: 710 EDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
+ P P+ + +GT +P
Sbjct: 201 SQQTPMCQAWGNPLPELKCLKDGTFPLPI 229
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 82.6 bits (204), Expect = 5e-18
Identities = 31/157 (19%), Positives = 48/157 (30%), Gaps = 27/157 (17%)
Query: 85 GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK 144
Y + P + P V EG ++ +V PS
Sbjct: 1 ATYAAASSALVPRGSHMYA----------PKLQGP-VAVYTWEGNQVNITCEVFAYPSAT 49
Query: 145 VEWYKDGKLIKDR-----QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 199
+ W++DG+L+ +I + + L + S D G Y+ N+ G L
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 200 VDPYEPKESKETPPSPPPYVVSEL--DTLQVNTGKPE 234
PS P E T QV +PE
Sbjct: 110 Q---------ADTPSSPSIDQVEPYSSTAQVQFDEPE 137
Score = 75.2 bits (185), Expect = 2e-15
Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 24/131 (18%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-----QITSEKNTHTL 290
P + P V EG ++ +V PS + W++DG+L+ +I + + L
Sbjct: 20 PKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYL 78
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA--VLEV 348
+ S D G Y+ N+ G L + ++ + +V
Sbjct: 79 EVTPDSENDFGNYNCTAVNRIGQESLEFI----------------LVQADTPSSPSIDQV 122
Query: 349 EVTSDKADVKW 359
E S A V++
Sbjct: 123 EPYSSTAQVQF 133
Score = 72.6 bits (178), Expect = 1e-14
Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 26/204 (12%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVV 60
+ + P VY E ++V + + A P + W+ +G+ L ++
Sbjct: 8 SALVPRGSHMYAPKLQGPVA-VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66
Query: 61 FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPL 120
+ S + + + + G Y A NR G+ ++ + P PSI +
Sbjct: 67 IKIYNT--PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ-ADTPSSPSIDQ-- 121
Query: 121 HDVSITEGESAVLSVQVGGE--PSP----KVEWYKDGKLIKDR-----QITSEKNTHTLT 169
V +A + P K EW G+ + + S + T+
Sbjct: 122 --VEPY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIV 178
Query: 170 LIQCSTKDKGRYSVKVT--NKEGT 191
++ T Y+V++ N +G
Sbjct: 179 GLKPET----TYAVRLAALNGKGL 198
Score = 72.2 bits (177), Expect = 2e-14
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENI- 614
++ E + + +V A P+ +I WFR+ + L SS +I++ +
Sbjct: 17 MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 615 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVH 670
LE+ D G+Y A N +G + + + P I+ ++ +
Sbjct: 77 YLEVTPDSEN-DFGNYNCTAVNRIGQESLEFILVQ-ADTPSSPSIDQVEPYSSTAQ 130
Score = 66.0 bits (161), Expect = 2e-12
Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 18/193 (9%)
Query: 312 GTVESAANLNVDQGKAEF---IKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIK 367
T +A++ V +G + ++ + E + EV + A + WF+DGQ +
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLP 60
Query: 368 TSK--KVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVP 421
+S + I + L + S +D G Y C + + L + P S+
Sbjct: 61 SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120
Query: 422 LQDVKVSRDEKASFEIELTKGDA-----LVKWYKDGKEIAFSENVTLSIDGKKQKLIIFS 476
+ S + F+ G +W G+E+ S+ + + I
Sbjct: 121 QVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI-- 177
Query: 477 AGLEDAGEYSCRV 489
GL+ Y+ R+
Sbjct: 178 VGLKPETTYAVRL 190
Score = 46.4 bits (110), Expect = 1e-05
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 681 STEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
S+ + AP + P V +G + I A P W +G ++ S
Sbjct: 7 SSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY 64
Query: 741 VKGKAEFIKKLDDLEVK 757
K LEV
Sbjct: 65 SNIKIYNTPSASYLEVT 81
Score = 33.6 bits (77), Expect = 0.15
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 726 AEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLI 784
A + + +VP A ++ + E + EV + A + WF++ L+
Sbjct: 1 ATYAAASSALVPRGSH-MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 785 K 785
Sbjct: 60 P 60
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 81.6 bits (201), Expect = 6e-18
Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 34/198 (17%)
Query: 19 TKPVY---AEENSEVTLEVRLVAVPEPDL--LWYYNGEPLQETDEVVFSDQSDMHSYVSI 73
V+ + S++ L L W G L+E
Sbjct: 2 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-----------QK 50
Query: 74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVL 133
K + G Y+ V E +I + P + I EGE+A+L
Sbjct: 51 TEFKVDSDDQWGEYSCVFLP-EPMGTANIQLHG------PPRVKAVKSSEHINEGETAML 103
Query: 134 SVQVGGEPSP-KVEWYKDGKLIKDR---------QITSEKNTHTLTLIQCSTK-DKGRYS 182
+ P WYK ++S + L + + + D G+Y
Sbjct: 104 VCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163
Query: 183 VKVTNKEGTVESAANLNV 200
T+ +G+ ++ L V
Sbjct: 164 CNGTSSKGSDQAIITLRV 181
Score = 80.8 bits (199), Expect = 1e-17
Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 52/217 (23%)
Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
+ G +L+ + + W K G ++K+ S
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE----DALPGQKTEFKVDSDD 59
Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
G YS + AN+ + P
Sbjct: 60 QWGEYSCVFLPEPMGT---ANIQLHG--------------------------------PP 84
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDR---------QITSEKN 286
+ I EGE+A+L + P WYK ++S +
Sbjct: 85 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144
Query: 287 THTLTLIQCSTK-DKGRYSVKVTNKEGTVESAANLNV 322
L + + + D G+Y T+ +G+ ++ L V
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 80.1 bits (197), Expect = 2e-17
Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 23/186 (12%)
Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
+ G +L+ + + W K G ++K+ S
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE----DALPGQKTEFKVDSDD 59
Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD--KAD 356
G YS + AN+ + G + E E A+L + S D
Sbjct: 60 QWGEYSCVFLPEPMGT---ANIQL-HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTD 115
Query: 357 VKWFKDGQEI------KTSKKVTIEKKGTIRKLLIRNISV-HDEGEYTC----SLPDQET 405
W+K + + + +L I N+++ D G+Y C S +
Sbjct: 116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Query: 406 SAELNV 411
L V
Sbjct: 176 IITLRV 181
Score = 73.5 bits (180), Expect = 3e-15
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 24/177 (13%)
Query: 342 ENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
+L + +W K G +K +K + S GEY+C
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDDQWGEYSC 66
Query: 399 S-LPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD---ALVKWYKDGKE 454
LP+ +A + + PP + ++ E A + ++ WYK
Sbjct: 67 VFLPEPMGTANIQLHG-PPRVKAVKSSEHINEGETAMLVCK-SESVPPVTDWAWYKITDS 124
Query: 455 IAFSENVTLSI------DGKKQKLIIFSAGLE-DAGEYSCRVG-DTGDKESKATLTV 503
+ + +L I + +E D G+Y C G ++ TL V
Sbjct: 125 EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 68.1 bits (166), Expect = 2e-13
Identities = 29/211 (13%), Positives = 49/211 (23%), Gaps = 68/211 (32%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+W K G + QK + GEYSC + A + +
Sbjct: 32 HRWLKGGVVLKEDALPG-------QKTEFKVDSDDQWGEYSCVF--LPEPMGTANIQLHG 82
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
P P
Sbjct: 83 P----------------------------------------------------PRVKAVK 90
Query: 566 EEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLL------SSPKKREIFDGENIILEL 618
+ + E T L+ K ++ P W++ S + L +
Sbjct: 91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHI 150
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
+ + E D G Y+ T+ GS + V
Sbjct: 151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 43.1 bits (101), Expect = 8e-05
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSY 70
PP + E L + +VP D WY + + + + S
Sbjct: 83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 71 --VSIVTIKSIKKRE-EGVYTVVAKNREGEAKMDIPVKV 106
S + I+++ G Y + +G + I ++V
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 41.2 bits (96), Expect = 4e-04
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 569 TVKEKG-TIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
TV++ G I L + S W + L E K DS+
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------PGQKTEFK-VDSDD 59
Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSI 662
G+Y V E + + G P + ++
Sbjct: 60 QWGEYSCVFLPE-----PMGTANIQLH--GPPRVKAV 89
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 78.6 bits (194), Expect = 6e-18
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
E+ ++ ++ G + L+ +V +PSP++ W KDG + + L L
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------PLPPSPVLILP 62
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
+ +D+G YS T+ + + +++ EP
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 75.1 bits (185), Expect = 1e-16
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
E+ ++ ++ G + L+ +V +PSP++ W KDG + + L L
Sbjct: 9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------PLPPSPVLILP 62
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ +D+G YS T+ + + +++
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 67.1 bits (164), Expect = 7e-14
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
S + + E V GT+ L +V A P+P I W ++ PL P
Sbjct: 5 SSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP--------- 55
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ +L L E D G Y VAT+ V++ +
Sbjct: 56 SPVLILPEI-GPQDQGTYSCVATHSSHGPQESRAVSISI 93
Score = 54.3 bits (131), Expect = 2e-09
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ + + + V L EV + + W KDG + + L++
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL------PLPPSPV---LILP 62
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPP 416
I D+G Y+C S + S +++ + P
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 53.6 bits (129), Expect = 4e-09
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGK 468
++ V + V+ + E + W KDG + + L +
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCE-VPAQPSPQIHWMKDGVPLPLPPSPVLILP-- 62
Query: 469 KQKLIIFSAGLEDAGEYSCRV--GDTGDKESK-ATLTVEAP 506
G +D G YSC G +ES+ ++++ P
Sbjct: 63 -------EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 51.6 bits (124), Expect = 2e-08
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ + VTL + A P P + W +G PL V
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL---------- 59
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
+ I +++G Y+ VA + + V ++ +P
Sbjct: 60 ---ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 27.8 bits (62), Expect = 4.0
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
+ P V G + + A P P+ W +G +
Sbjct: 7 GLEEVQLVVEPEG-GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP 54
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 81.9 bits (201), Expect = 7e-18
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 17/194 (8%)
Query: 127 EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 186
E S +L+ + + W+KDGK+I ++ L + +G Y K +
Sbjct: 17 EDGSVLLT---CDAEAKNITWFKDGKMIG----FLTEDKKKWNLGSNAKDPRGMYQCKGS 69
Query: 187 NKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS 246
+ + K+ + + G E I + + VS
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAK----KDDAKKDGSDGNEEMGGITQTPYKVS 125
Query: 247 ITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCS-TKDKGRY 303
I G + +L+ P ++ W + K I + + L+L + S + G Y
Sbjct: 126 I-SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYY 182
Query: 304 SVKVTNKEGTVESA 317
+ +
Sbjct: 183 VCYPRGSKPEDANF 196
Score = 69.9 bits (170), Expect = 9e-14
Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 34/198 (17%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ W+KDGK I F K+K + S + G Y C+ K + + +
Sbjct: 32 ITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGS 84
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
A + GS G +
Sbjct: 85 -ADDAKKDAAKKDDAKK------------------------DDAKKDGSDGNEEMGGITQ 119
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
V GT ++ P I+W N+K + + I E+ + + ++ E
Sbjct: 120 TPYKVSISGT-TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE- 177
Query: 626 DAGDYKVVATNELGSATH 643
+G Y +
Sbjct: 178 QSGYYVCYPRGSKPEDAN 195
Score = 63.4 bits (153), Expect = 2e-11
Identities = 27/213 (12%), Positives = 63/213 (29%), Gaps = 40/213 (18%)
Query: 322 VDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR 381
+ K + K+ D + E + +L + + ++ WFKDG+ I + +
Sbjct: 1 MQSIKGNHLVKVYDYQ--EDGSVLLTCDA--EAKNITWFKDGKMIGFLTEDK-------K 49
Query: 382 KLLIRNISVHDEGEYTC---------------SLPDQETSAELNVVELPPEISVPLQDVK 426
K + + + G Y C + + + +
Sbjct: 50 KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109
Query: 427 VSRDEKASFEIELT---KGDAL-----------VKWYKDGKEIAFSENVTLSIDGKKQKL 472
+ + + G + + W + K I E+ +
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 169
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ + LE +G Y C + +++ L + A
Sbjct: 170 LKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202
Score = 63.0 bits (152), Expect = 2e-11
Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 44/199 (22%)
Query: 24 AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
+E+ V L ++ W+ +G+ + + S K
Sbjct: 15 YQEDGSVLLTC---DAEAKNITWFKDGKMIGFLT-----------EDKKKWNLGSNAKDP 60
Query: 84 EGVYTVVAKNREGEA------------------------KMDIPVKVNTGKPEKPSILEP 119
G+Y + + K D + G E I +
Sbjct: 61 RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNTHTLTLIQCS-TK 176
+ VSI G + +L+ P ++ W + K I + + L+L + S +
Sbjct: 121 PYKVSI-SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 177
Query: 177 DKGRYSVKVTNKEGTVESA 195
G Y + +
Sbjct: 178 QSGYYVCYPRGSKPEDANF 196
Score = 51.8 bits (123), Expect = 1e-07
Identities = 18/178 (10%), Positives = 44/178 (24%), Gaps = 25/178 (14%)
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
+ A +I WF++ K + + ++ ++ + + G Y+ +
Sbjct: 27 AEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD--------PRGMYQCKGSQNKSKPLQV 78
Query: 645 ARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEV 704
+ + + + + + P
Sbjct: 79 YYRMGSADDAKKDAAKK---------------DDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 705 LVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDDLEVKERENA 762
+ G + + P + W N I + K L E E E +
Sbjct: 124 VSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQS 179
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 82.1 bits (202), Expect = 8e-18
Identities = 29/210 (13%), Positives = 72/210 (34%), Gaps = 26/210 (12%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY---NGEPLQETDEVVFSDQSDMH 68
+ + +N V + ++ ++ + + + + + +
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCL-GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF- 66
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
TI S G+ AK + + + + V G +L P H + ++ G
Sbjct: 67 ------TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG 120
Query: 129 ESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSE-----------KNTHTLTLIQCST 175
E VL+ E + ++ W + +++ + K TLT+ +
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180
Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
D+G Y+ ++ T +++ + V +E
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRV--HED 208
Score = 74.4 bits (182), Expect = 3e-15
Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 45/227 (19%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK---DGKLIKDRQITSEKNTHTL 168
S + ++ + ++ V+ + V + + + D S +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
T+ G + + + +S + V Y V
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVV-----------VVGYRIYDV-------- 107
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSE-- 284
+L P H + ++ GE VL+ E + ++ W + +++ +
Sbjct: 108 ---------VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 158
Query: 285 ---------KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
K TLT+ + D+G Y+ ++ T +++ + V
Sbjct: 159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 61.7 bits (149), Expect = 8e-11
Identities = 23/194 (11%), Positives = 55/194 (28%), Gaps = 25/194 (12%)
Query: 335 DLEVKERENAVLEVEVTSDKADVKW---FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
+ + + V+ + +V + + + + +++ + K + I + +
Sbjct: 18 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK---KGFTIPSYMIS 74
Query: 392 DEGEYTC----SLPDQETSAELNVVELPPEISV---PLQDVKVSRDEKASFEIELT---K 441
G C + ++ + VV V P +++S EK
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELN 134
Query: 442 GDALVKWYKDGKEIAFSENVTLSIDGKKQK--------LIIFSAGLEDAGEYSCRVGDT- 492
W + + V + + L I D G Y+C
Sbjct: 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Query: 493 GDKESKATLTVEAP 506
K++ + V
Sbjct: 195 MTKKNSTFVRVHED 208
Score = 47.1 bits (111), Expect = 6e-06
Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 56/244 (22%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
+ + ++++ + + V E F + K+ I
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 68
Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS 533
S + AG C + +S + V ++ V L P
Sbjct: 69 PSYMISYAGMVFCEAKINDESYQSIMYIVVVVG-----YRIYDVVLSP------------ 111
Query: 534 SPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 593
S I++ +V EK + A+ + + W
Sbjct: 112 SHGIEL-----------------------------SVGEKLVLNCTARTELNVGIDFNWE 142
Query: 594 RNNKPLLSSPKKREIFDGENI--------ILELKEADSETDAGDYKVVATNELGSATHGA 645
+ ++ L + + +D G Y A++ L + +
Sbjct: 143 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRSDQGLYTCAASSGLMTKKNST 201
Query: 646 RVTV 649
V V
Sbjct: 202 FVRV 205
Score = 31.7 bits (71), Expect = 0.72
Identities = 21/192 (10%), Positives = 37/192 (19%), Gaps = 48/192 (25%)
Query: 559 PLFIERFEEK------TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
FI ++ T + T+ + + ++ P I
Sbjct: 4 SPFIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDS 62
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHL 672
+ AG A S + V VG
Sbjct: 63 KKGFTIPSYMIS-YAGMVFCEAKINDESYQSIMYIVV---VVGYRI-------------- 104
Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIE--VRFKALPPPKAEWTV 730
+ P + + GE L + R + W
Sbjct: 105 ---------------------YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143
Query: 731 NGTVIVPSKRVK 742
+ K V
Sbjct: 144 PSSKHQHKKLVN 155
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 80.7 bits (199), Expect = 8e-18
Identities = 37/219 (16%), Positives = 64/219 (29%), Gaps = 52/219 (23%)
Query: 108 TGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNT 165
T K + LEP S+ E +S L Q P +W+ + LI
Sbjct: 2 TEDLPKAVVFLEP-QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-------SSQA 53
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
+ + + D G Y + +S+
Sbjct: 54 SSYFIDAATVNDSGEYRCQTNL------------------------------STLSDPVQ 83
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSE 284
L+V+ G +L+ V E + L KV + ++GK K
Sbjct: 84 LEVHIG----WLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH---- 134
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
+ + + + KD G Y + V S N+ +
Sbjct: 135 -HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 78.0 bits (192), Expect = 7e-17
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 26/172 (15%)
Query: 338 VKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGE 395
V E+++ L+ + D +WF + I + I +V+D GE
Sbjct: 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSGE 68
Query: 396 YTCSLPDQETS--AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKD 451
Y C S +L V + P K + K AL V + ++
Sbjct: 69 YRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEE--DPIHLRCHSWKNTALHKVTYLQN 126
Query: 452 GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
GK+ + I A L+D+G Y CR S T+ +
Sbjct: 127 GKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170
Score = 71.1 bits (174), Expect = 2e-14
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 29/174 (16%)
Query: 30 VTLEVRLVAVPEPD-LLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYT 88
VTL+ + PE + W++N + S I + + G Y
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYR 70
Query: 89 VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEW 147
PV++ +L+ V E + L KV +
Sbjct: 71 CQTNLSTLSD----PVQLEVHIG--WLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTY 123
Query: 148 YKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
++GK K + + + + KD G Y + V S N+ +
Sbjct: 124 LQNGKDRKYFH-----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 50.6 bits (121), Expect = 2e-07
Identities = 28/245 (11%), Positives = 61/245 (24%), Gaps = 78/245 (31%)
Query: 411 VVELP-PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDG 467
+LP + + Q V + + + + D +W+ + I+
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS----------S 51
Query: 468 KKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
+ I +A + D+GEY C+ + + L V + P
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTLSDP-VQLEVHIG--------WLLLQAPR----- 97
Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P 586
KE+ I L +
Sbjct: 98 ----------------------------------------WVFKEEDPIHLRCHSWKNTA 117
Query: 587 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 646
+ + +N K + + +A + D+G Y + +
Sbjct: 118 LHKVTYLQNGKDRKYFHHNSD--------FHIPKA-TLKDSGSYFCRGLVGSKNVS-SET 167
Query: 647 VTVDV 651
V + +
Sbjct: 168 VNITI 172
Score = 37.2 bits (86), Expect = 0.008
Identities = 21/172 (12%), Positives = 39/172 (22%), Gaps = 58/172 (33%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIV-WFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 627
+V EK ++ L + SP + WF N + S I + D+
Sbjct: 18 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA-----------ATVNDS 66
Query: 628 GDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVE 687
G+Y+ S V ++
Sbjct: 67 GEYRCQTNLSTLSDP----VQLE------------------------------------- 85
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPP-KAEWTVNGTVIVPS 738
V ++ P + + + K + NG
Sbjct: 86 --VHIGWLLLQAPRWVFKE--EDPIHLRCHSWKNTALHKVTYLQNGKDRKYF 133
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 77.9 bits (192), Expect = 2e-17
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 553 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G P+ + +TV GT L SP P+I+W ++ + + + +
Sbjct: 1 GSSGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL- 59
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
EN +L+++ A D G Y +A+ G AT A + V
Sbjct: 60 -ENGVLQIRYA-KLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 75.2 bits (185), Expect = 2e-16
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNT 165
+G P I + + ++ + VLS G P P + W KDG L+ D +I +N
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN- 61
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSP 215
L + D GRY+ + G +A + V + P P
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDP 111
Score = 72.1 bits (177), Expect = 2e-15
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK--DRQITSEKNT 287
+G P I + + ++ + VLS G P P + W KDG L+ D +I +N
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN- 61
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + D GRY+ + G +A + V
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
Score = 62.5 bits (152), Expect = 5e-12
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP + + L P P +LW +G + D + ++ +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---- 63
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ I+ K + G YT +A GEA ++V + P D ++
Sbjct: 64 --LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ--EFGVPVQPPRPTDPNLIPS 116
Score = 59.4 bits (144), Expect = 7e-11
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTS-KKVTIEKKGTIRKLLI 385
+ + V VL T + W KDG + T ++ + G L I
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---LQI 66
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVS 428
R + D G YTC + SA + V E P + +
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-FGVPVQPPRPTDPN 112
Score = 56.3 bits (136), Expect = 7e-10
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN-VTLSIDGKKQK 471
PP I + V+ D G + W KDG ++ ++ + +G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCV-ATGSPVPTILWRKDGVLVSTQDSRIKQLENGV--- 63
Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPS-VTLVP 521
L I A L D G Y+C +G+ A + V+ V P+ L+P
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIP 115
Score = 27.8 bits (62), Expect = 5.1
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
PVI P V + P P W +G ++
Sbjct: 8 PPVIRQGPV-NQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS 54
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 77.0 bits (190), Expect = 2e-17
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 172
K I + G + VL G P P +W+K+ + + + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPY 56
Query: 173 CSTKDKGRYSVKVTNKEGTVES-AANLNVDP 202
+ +G Y V N + +S + +D
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 75.5 bits (186), Expect = 6e-17
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQ 294
K I + G + VL G P P +W+K+ + + + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL------THETKKLYMVPY 56
Query: 295 CSTKDKGRYSVKVTNKEGTVES-AANLNVD 323
+ +G Y V N + +S + +D
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
Score = 58.5 bits (142), Expect = 6e-11
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
G + + T+ L SP P WF+N PL KK +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------L 51
Query: 616 LELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 651
+ D E G Y N+ S + + +D
Sbjct: 52 YMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 53.1 bits (128), Expect = 5e-09
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 13/89 (14%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
G + S + L+ V P P W+ N PL +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------- 49
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
+ + + +G Y N
Sbjct: 50 --KLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
Score = 51.2 bits (123), Expect = 2e-08
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 13/99 (13%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKKQKL 472
+I V K+ + G + +W+K+ + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHETKKLYMVP------ 55
Query: 473 IIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEF 510
LE G Y C V D ++SK +
Sbjct: 56 ---YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 50.4 bits (121), Expect = 4e-08
Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIR 386
+ + ++ VL+ +WFK+ + K + ++
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVP 55
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVELPPEI 418
+ + +G Y C Q++ +++ +
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 28.8 bits (65), Expect = 1.5
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 700 PPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVI 735
P + G L ++ P P +W N +
Sbjct: 9 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 44
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 80.5 bits (198), Expect = 2e-17
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 29/182 (15%)
Query: 245 VSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKD--------------------RQI 281
V+ GE L+ +V P +V W+K G + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
NT L + + G Y ++ E V +L+V + + +
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDF 119
Query: 342 ENAVLEVEVTSD-KADVKW-FKDG---QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEY 396
+ V + V+W +G + V EK G++ + ++
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179
Query: 397 TC 398
TC
Sbjct: 180 TC 181
Score = 77.0 bits (189), Expect = 3e-16
Identities = 27/224 (12%), Positives = 51/224 (22%), Gaps = 62/224 (27%)
Query: 123 VSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKD--------------------RQI 159
V+ GE L+ +V P +V W+K G + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYV 219
NT L + + G Y ++ E V +L+V
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK----------------- 103
Query: 220 VSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEW-YKDGKLIKD 278
++ + ++ V P P V+W +G
Sbjct: 104 ---------------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP 148
Query: 279 R------QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
+ + + + N +
Sbjct: 149 TAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 70.1 bits (171), Expect = 7e-14
Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 27/196 (13%)
Query: 22 VYAEENSEVTLEVRLVAV---PEPDLLWYYNGEPLQET-----------DEVVFSDQSDM 67
V A VTL V PE ++ W+ G ++ E F D+
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 68 H--SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSI 125
H + + + + +G Y K E E + V + ++
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV----KPLTLSVHSERSQF 116
Query: 126 TEGESAVLSVQVGGEPSPKVEW-YKDGKLIKDR------QITSEKNTHTLTLIQCSTKDK 178
+ ++ V P P V+W +G + + +
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 179 GRYSVKVTNKEGTVES 194
+ N +
Sbjct: 177 LPVTCVGKNDKEEAHG 192
Score = 65.1 bits (158), Expect = 4e-12
Identities = 29/230 (12%), Positives = 52/230 (22%), Gaps = 76/230 (33%)
Query: 446 VKWYKDGKEIA-----------------FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
V W+K G F + L++ +A + G Y CR
Sbjct: 26 VSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCR 85
Query: 489 V-GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIV 547
+ + + L+V P
Sbjct: 86 MKLGETEVTKQEHLSVVKP----------------------------------------- 104
Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN----KPLLSSP 603
E + + + V A P P + W P ++
Sbjct: 105 -----------LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG 153
Query: 604 KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
+ DG + + V N+ A HG V+ + +
Sbjct: 154 GVMKEKDGSLSVAVDLSL-PKPWHLPVTCVGKNDKEEA-HGVYVSGYLSQ 201
Score = 64.7 bits (157), Expect = 5e-12
Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 33/177 (18%)
Query: 342 ENAVLEVEVT----SDKADVKWFKDGQEIKTSKKVTIE-----------------KKGTI 380
E L + +V WFK G + + +
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 381 RKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFE 436
L++ ++ +G Y C + L+VV+ P +SV + + +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVT 125
Query: 437 IELTKGD--ALVKW-YKDGKEIA---FSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
V+W +G E A + V DG + S +C
Sbjct: 126 CT-VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Score = 54.3 bits (130), Expect = 2e-08
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNG--EPLQETDEVVFSDQSDMHS 69
P T S ++ + S +T+ + A P P + W EP + D
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD--G 161
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
+S+ S+ K T V KN + EA
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
Score = 40.4 bits (94), Expect = 8e-04
Identities = 21/176 (11%), Positives = 36/176 (20%), Gaps = 61/176 (34%)
Query: 581 KVKASPAPSIVWFRNNKP-------------LLSSPKKREIF----DGENIILELKEADS 623
+V P + WF+ + R F L + A +
Sbjct: 17 RVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA-N 75
Query: 624 ETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTE 683
+ G+Y T ++V P S+
Sbjct: 76 ISHDGNYLCRMKLGETEVTKQEHLSVVK-----PLTLSV--------------------- 109
Query: 684 VDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTV-NGTVIVPS 738
L + A P P +W + G P+
Sbjct: 110 ----------------HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT 149
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 80.0 bits (197), Expect = 2e-17
Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 32/197 (16%)
Query: 22 VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVF-------------SDQSDMH 68
V ++ V L W + + ++ F S +S
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ IK++K + Y ++++ E ++ L D + +G
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL------------LVFGLTANSDTHLLQG 112
Query: 129 ESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
+S L+++ SP V+ + + TL++ Q +D G ++ V
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQN 165
Query: 189 EGTVESAANLNVDPYEP 205
+ VE ++ V ++
Sbjct: 166 QKKVEFKIDIVVLAFQK 182
Score = 75.4 bits (185), Expect = 8e-16
Identities = 24/197 (12%), Positives = 57/197 (28%), Gaps = 44/197 (22%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 284
V +G++ L+ + S + W ++ R+ +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ L + +D Y +V +++ V Q + D + + ++
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEV---------QLLVFGLTANSDTHLLQGQSL 115
Query: 345 VLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----S 399
L +E V+ + K L + + + D G +TC +
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQN 165
Query: 400 LPDQETSAELNVVELPP 416
E ++ V+
Sbjct: 166 QKKVEFKIDIVVLAFQK 182
Score = 74.2 bits (182), Expect = 2e-15
Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 67/220 (30%)
Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------------KDRQITSE 162
V +G++ L+ + S + W ++ R+ +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+ L + +D Y +V +++ V+
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ----------------------------- 95
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQIT 282
L + D + +G+S L+++ SP V+
Sbjct: 96 LLVFGL----TANS-------DTHLLQGQSLTLTLESPPGSSPSVQCRSPRG-------K 137
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + TL++ Q +D G ++ V + VE ++ V
Sbjct: 138 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 58.1 bits (140), Expect = 7e-10
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 35/188 (18%)
Query: 338 VKERENAVLEVEVTSDKA-DVKWFKDGQEIKTSKKVTIEKKGTIR--------------- 381
K+ + L + K+ W Q + + KG +
Sbjct: 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG 66
Query: 382 --KLLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
L+I+N+ + D Y C + DQ+ +L V L D + + + + +E
Sbjct: 67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN-----SDTHLLQGQSLTLTLES 121
Query: 440 TKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKES 497
G + V+ + L + L+D+G ++C V + E
Sbjct: 122 PPGSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWTCTVLQNQKKVEF 171
Query: 498 KATLTVEA 505
K + V A
Sbjct: 172 KIDIVVLA 179
Score = 44.6 bits (105), Expect = 3e-05
Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 11/81 (13%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
+ + ++ L + +PS+ + L + + D+G
Sbjct: 108 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------GGKTLSVSQL-ELQDSG 156
Query: 629 DYKVVATNELGSATHGARVTV 649
+ + V
Sbjct: 157 TWTCTVLQNQKKVEFKIDIVV 177
Score = 40.3 bits (94), Expect = 7e-04
Identities = 7/86 (8%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIK 80
+ + +TL + P + + + +++ ++
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT--------------LSVSQLE 151
Query: 81 KREEGVYTVVAKNREGEAKMDIPVKV 106
++ G +T + + + I + V
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 33.0 bits (75), Expect = 0.21
Identities = 17/193 (8%), Positives = 42/193 (21%), Gaps = 69/193 (35%)
Query: 567 EKTVKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPK-----------------KREI 608
+ + +KG T+ L + W +N+ + + +R +
Sbjct: 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSL 62
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNH 668
+D N L +K D+ Y ++
Sbjct: 63 WDQGNFPLIIKNL-KIEDSDTYICEVEDQKEEVQLL------------------------ 97
Query: 669 VHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEW 728
V + + +G+ L + + P +
Sbjct: 98 --------------------------VFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQC 131
Query: 729 TVNGTVIVPSKRV 741
+ +
Sbjct: 132 RSPRGKNIQGGKT 144
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 79.8 bits (196), Expect = 3e-17
Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 21/200 (10%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 298
P G+S L+ G SP W + ++T+E T TLT+ S
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 299 DKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVT----SDK 354
++ Y T + +E + + + + ++ + ++ V D+
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 355 ADVKWFKDGQEIKTSKKVTIEKKGTIR----KLLIRNISVHDEGEYTC-----------S 399
++ K +K+ + + + ++ ++ + C
Sbjct: 124 LEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183
Query: 400 LPDQETSAELNVVELPPEIS 419
++ EL V P+ +
Sbjct: 184 PTVRQAVKELQVYI-SPKNT 202
Score = 71.7 bits (175), Expect = 2e-14
Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 42/210 (20%)
Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
P G+S L+ G SP W + ++T+E T TLT+ S
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
++ Y T + +E + + Y + E S P
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEI--YSFPKDPEIHLSGP-------------------- 102
Query: 237 SILEPLHDVSITEGESAVLSVQV-GGEPSPK--VEWYKDGKLIKDRQI-------TSEKN 286
+ G+ + V P + ++ K L+K ++ + E
Sbjct: 103 ----------LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETK 152
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
+ +T + ++S
Sbjct: 153 SLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 182
Score = 59.0 bits (142), Expect = 5e-10
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 23/185 (12%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLLWYYNGE-PLQETDEVVFSDQSDMHSYVSIVTIKSI 79
A+ V+L P W + PL + S +T+ +
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT--------STLTMNPV 61
Query: 80 KKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-G 138
E Y A + + I V++ P E + G+ + V
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEI----YSFPKDPEIHLSGPLEAGKPITVKCSVAD 117
Query: 139 GEPSPK--VEWYKDGKLIKDRQI-------TSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
P + ++ K L+K ++ + E + +T +
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 177
Query: 190 GTVES 194
++S
Sbjct: 178 DEMDS 182
Score = 52.5 bits (125), Expect = 8e-08
Identities = 24/194 (12%), Positives = 54/194 (27%), Gaps = 25/194 (12%)
Query: 334 DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
+ ++ L T W I + + +GT L + +S +
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGN 65
Query: 393 EGEYTCSL----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT----KGDA 444
E Y C+ E ++ + P + + + + + + +
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIH-LSGPLEAGKPITVKCSVADVYPFDRL 124
Query: 445 LVKWYKDGKEIAFSENVTLSIDGK---KQKLIIFSAGLEDAG-EYSCRV--------GDT 492
+ K + E + + K + F+ +ED G CR
Sbjct: 125 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184
Query: 493 GDKESKATLTVEAP 506
+++ L V
Sbjct: 185 TVRQAVKELQVYIS 198
Score = 48.2 bits (114), Expect = 2e-06
Identities = 25/178 (14%), Positives = 47/178 (26%), Gaps = 27/178 (15%)
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
+ ++ L +P W L+ + +G L + S
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---GKVTNEGTTSTLTMNPV-SFG 64
Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVD 685
+ Y AT E G +V ++ S ++
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVE--------------------IYSFPKDPEIHLSGPLE 104
Query: 686 VEKPVE---TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKR 740
KP+ + + P E+ + KG+ L F K+ T + V
Sbjct: 105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Score = 34.7 bits (79), Expect = 0.061
Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAV---PEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
P + E +T++ + V ++ ++ + + +D+ +
Sbjct: 91 FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 150
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
+ VT + + V AK E V+
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAV 190
Score = 34.4 bits (78), Expect = 0.091
Identities = 19/199 (9%), Positives = 39/199 (19%), Gaps = 56/199 (28%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVE 504
W N ++ +G L + + Y C ++ E + +
Sbjct: 33 FSWRTQIDS---PLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
+ + S L G + + C P
Sbjct: 90 SFP-KDPEIHLSGPLEA--GK---PITV----------------KCS--VADVYP----- 120
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELK-EA 621
I + + + S + + E LE+
Sbjct: 121 --------------------FDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP 160
Query: 622 DSETDAGDYKVVATNELGS 640
E A +
Sbjct: 161 VIEDIGKVLVCRAKLHIDE 179
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 75.9 bits (187), Expect = 6e-17
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 108 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNT 165
+G P IL+ + ++ +A+L + G+P P + W K+G +D + T ++
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ- 61
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
TL + D G Y+ T+ G +A L+V
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 75.9 bits (187), Expect = 6e-17
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 230 TGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--KDRQITSEKNT 287
+G P IL+ + ++ +A+L + G+P P + W K+G +D + T ++
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ- 61
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
TL + D G Y+ T+ G +A L+V
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 74.0 bits (182), Expect = 3e-16
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 553 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 610
GS G P+ ++ +T+ GT L K P P I W + + I
Sbjct: 1 GSSGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ- 59
Query: 611 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
E L++K +D G Y VAT+ G + A + V
Sbjct: 60 -EQGTLQIKNL-RISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 57.0 bits (138), Expect = 3e-10
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKT-SKKVTIEKKGTIRKLLI 385
++ + + A+L+ + T D + W K+G + TI+++GT L I
Sbjct: 10 IILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---LQI 66
Query: 386 RNISVHDEGEYTC----SLPDQETSAELNVVE 413
+N+ + D G YTC S + SA L+V E
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 54.7 bits (132), Expect = 1e-09
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP + + L+ + P P + W G D +
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---- 63
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ IK+++ + G YT VA + GE + V
Sbjct: 64 --LQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 53.6 bits (129), Expect = 4e-09
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSEN-VTLSIDGKKQK 471
PP I + ++ D A + + GD ++ W K+G + T+ G
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCK-ATGDPLPVISWLKEGFTFPGRDPRATIQEQGT--- 63
Query: 472 LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPA 507
L I + + D G Y+C +G+ A L V
Sbjct: 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 76.3 bits (188), Expect = 7e-17
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 97 EAKMDIPVKVNTGKPEKPSILEPLH---DVSITEGESAVLSVQVGGEPSPKVEWYKDGKL 153
+ PV + E P I P H GE L V G+P P+V W K G
Sbjct: 6 SGTLAQPVTI-REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64
Query: 154 IKDR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + + + Q + D G Y + V + + + V
Sbjct: 65 LDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 76.3 bits (188), Expect = 8e-17
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 221 SELDTLQVNTGKPEKPSILEPLH---DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK 277
L E P I P H GE L V G+P P+V W K G +
Sbjct: 7 GTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD 66
Query: 278 DR--QITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + + Q + D G Y + V + + + V
Sbjct: 67 TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 64.3 bits (157), Expect = 1e-12
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 628
K + L+ + P P +VW + PL +S D + + +++A D+G
Sbjct: 35 IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF-DTVFFVRQAARS-DSG 92
Query: 629 DYKVVATNELGSATHGARVTVDVEKVG 655
+Y++ E T R+ V VEK G
Sbjct: 93 EYELSVQIENMKDTATIRIRV-VEKAG 118
Score = 58.9 bits (143), Expect = 7e-11
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 12 PPTF---SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
PP + + ++ L V P P ++W G PL + V + D
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFD-- 78
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
++ ++ + + G Y + + + I ++V K
Sbjct: 79 ---TVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV-VEKA 117
Score = 55.5 bits (134), Expect = 1e-09
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 308 TNKEGTVESAANLNVDQGKAEFI---KKLDDLEVKERENAVLEVEVTSD-KADVKWFKDG 363
+ GT+ + + K E L V + V W K G
Sbjct: 3 SGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGG 62
Query: 364 QEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP----DQETSAELNVVELP 415
+ TS+ V + +R + D GEY S+ + + VVE
Sbjct: 63 APLDTSR-VHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 51.2 bits (123), Expect = 5e-08
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 402 DQETSAELNVVELPPEISVPL---QDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIA 456
+ + PP+I +P Q E+ + + G V W K G +
Sbjct: 8 TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLD 66
Query: 457 FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
+ V + + A D+GEY V + + + V
Sbjct: 67 -TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 46.2 bits (110), Expect = 2e-06
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 677 SPRQSTEVDVEKPVETAPVIDPPPPPE--VLVKKGEDLKIEVRFKALPPPKAEWTVNGTV 734
S + + + P I P + K GE L + V F+ P P+ WT G
Sbjct: 5 SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64
Query: 735 IVPSKRVK 742
+ + RV
Sbjct: 65 L-DTSRVH 71
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 80.0 bits (196), Expect = 9e-17
Identities = 24/246 (9%), Positives = 68/246 (27%), Gaps = 38/246 (15%)
Query: 114 PSILEPLHDVSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKDRQITS-----EKNT 165
++ +V + G + L P + W K + ++ +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP-----YEPKESKETPPSPPPYVV 220
+ G + + + + +V P Y + ++ + + +
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF-GLD 121
Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ 280
++ L+V P + V + EG ++ + V WY ++ +
Sbjct: 122 AKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYE 181
Query: 281 ITSEK------------------------NTHTLTLIQCSTKDKGRYSVKVTNKEGTVES 316
+ + L + D GR ++ +G +++
Sbjct: 182 TGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241
Query: 317 AANLNV 322
+ +
Sbjct: 242 DRSSTI 247
Score = 70.3 bits (171), Expect = 2e-13
Identities = 25/245 (10%), Positives = 54/245 (22%), Gaps = 57/245 (23%)
Query: 13 PTFSKKTKPVYAEENSEVTLE---VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
T V V L P + W P + T +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 70 YVSIV-------------------------TIKSIKKREEGVYTVVAKN-----REGEAK 99
+ + + ++ G Y G
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 100 MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI 159
+ +KV P + V + EG ++ + V WY ++ +
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 160 TSEK------------------------NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA 195
+ + L + D GR ++ +G +++
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Query: 196 ANLNV 200
+ +
Sbjct: 243 RSSTI 247
Score = 68.4 bits (166), Expect = 6e-13
Identities = 30/248 (12%), Positives = 62/248 (25%), Gaps = 69/248 (27%)
Query: 236 PSILEPLHDVSITEGESAVLS---VQVGGEPSPKVEWYKDGKLIKDRQITS--------- 283
++ +V + G + L P + W K + ++
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 284 -----------------------EKNTHTLTLIQCSTKDKGRYSVKVTNKE-----GTVE 315
TL L +D GRY +V G
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 316 SAANLNVDQGKAE---FIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKK 371
+ L V + + ++V E + + T A+V W+ + +
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 372 VTIEKKGTIRK---------------------LLIRNISVHDEGEYTC----SLPDQETS 406
T + + L+IR + D G C + +
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Query: 407 AELNVVEL 414
++++
Sbjct: 243 RSSTILKV 250
Score = 54.9 bits (131), Expect = 2e-08
Identities = 31/237 (13%), Positives = 56/237 (23%), Gaps = 68/237 (28%)
Query: 335 DLEVKERENAVLEVEVTSDKAD----VKWFKDGQEIKTSKKVTIEKKG------------ 378
++EV L + W K +++K
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70
Query: 379 -----------------TIRKLLIRNISVHDEGEYTCSLPDQETSAELNVVEL------- 414
L + ++ D G Y C + E +
Sbjct: 71 YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130
Query: 415 -----PPEISVPLQDVKVSRDEKASFEIELTKG-DALVKWYKDGKEIAFSENVTLSIDGK 468
+ V+V + T +A V WY E T
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLAN 190
Query: 469 KQK---------------------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTV 503
K + L+I +A + DAG C + G+ ++ + T+
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 54.5 bits (130), Expect = 3e-08
Identities = 33/287 (11%), Positives = 57/287 (19%), Gaps = 99/287 (34%)
Query: 418 ISVPLQDVKVSRDEKASF--EIELTKGD--ALVKWYKDGKEIAFSENVTLS--------- 464
+ +V+V +L ++ W K ++ +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 465 --------------------IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVE 504
+ L + +D G Y C+V +
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT-------- 116
Query: 505 APAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIER 564
EF SV L G + +
Sbjct: 117 ----EFGLDAKSVVLKVT------------------------------GHTPSNNVHVST 142
Query: 565 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--------------------- 603
E V E I + ++ W+ +
Sbjct: 143 AEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSE 202
Query: 604 -KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
R F G L ++ A TDAG G T+
Sbjct: 203 IAGRASFSGAR-NLVIRAA-KITDAGRVWCELATGQGELDADRSSTI 247
Score = 44.9 bits (105), Expect = 4e-05
Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 17/112 (15%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+ V +E +++T+ ++ WY + + + ++ + +
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 72 SIV-----------------TIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
I++ K + G +GE D +
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 33.0 bits (74), Expect = 0.29
Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 26/188 (13%)
Query: 565 FEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 621
E V GT+ L + + P I W + P S+ + ++ + L E+
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 622 DSETDA-GDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRN--------HVHHL 672
DS ++ GD+ R +V + +
Sbjct: 69 DSYKESFGDFL-------------GRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 115
Query: 673 DNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNG 732
+S + V + V V V +G D+ + W
Sbjct: 116 TEFGLDAKSVVLKVTGHTPSNNVH-VSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP 174
Query: 733 TVIVPSKR 740
T +
Sbjct: 175 TFFENYET 182
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 75.2 bits (185), Expect = 1e-16
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 111 PEKPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSE 162
P ++ + GG P P + W K+GK K
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 163 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+L + DKG Y+ V N+ G++ +L+V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 75.2 bits (185), Expect = 1e-16
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 233 PEKPSILEPLH----DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD----RQITSE 284
P ++ + GG P P + W K+GK K
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+L + DKG Y+ V N+ G++ +L+V
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 70.2 bits (172), Expect = 7e-15
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 557 QAPLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDG 611
+AP + V T++ +P P++ W +N K +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 612 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
++ L ++ D G+Y V NE GS H + V
Sbjct: 63 QHWSLIMESVVPS-DKGNYTCVVENEYGSINHTYHLDV 99
Score = 53.6 bits (129), Expect = 4e-09
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 12 PPTFSKKTKP----VYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
P ++ K + V P P + W NG+ ++ + +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN- 62
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+ ++S+ ++G YT V +N G + V
Sbjct: 63 --QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 52.1 bits (125), Expect = 1e-08
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 328 EFIKKL----DDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEK-KGTIR 381
+ V + ++W K+G+E K ++ K +
Sbjct: 6 YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 65
Query: 382 KLLIRNISVHDEGEYTC----SLPDQETSAELNVV 412
L++ ++ D+G YTC + L+VV
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 49.4 bits (118), Expect = 1e-07
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 446 VKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
++W K+GKE + + + LI+ S D G Y+C V + G L V
Sbjct: 40 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 30.9 bits (70), Expect = 0.37
Identities = 12/56 (21%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 691 ETAPVIDPPPPPE---VLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKG 743
+ AP E V +K P P W NG R+ G
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 57
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 78.4 bits (193), Expect = 1e-16
Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 29/201 (14%)
Query: 230 TGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNT 287
T K + LEP + E +S L Q P +W+ + LI
Sbjct: 2 TEDLPKAVVFLEP-QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI-------SSQA 53
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLE 347
+ + + D G Y + T+ L V G + + KE + L
Sbjct: 54 SSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWL--LLQAPRWVFKEEDPIHLR 109
Query: 348 VEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-----L 400
+ V + ++G+ K I ++ D G Y C
Sbjct: 110 CHSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSK 161
Query: 401 PDQETSAELNVVELPPEISVP 421
+ ++ + + ++
Sbjct: 162 NVSSETVQITITQGLAVSTIS 182
Score = 76.5 bits (188), Expect = 6e-16
Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 29/189 (15%)
Query: 337 EVKERENAVLEVEVTSDKAD--VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEG 394
V E+++ L+ + D +WF + I + I +V D G
Sbjct: 18 RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSG 67
Query: 395 EYTCSLPDQETS--AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYK 450
EY C S +L V + P K + K AL V + +
Sbjct: 68 EYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEE--DPIHLRCHSWKNTALHKVTYLQ 125
Query: 451 DGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV--GDTGDKESKATLTV-EAPA 507
+GK + I A L+D+G Y CR G +T+ + A
Sbjct: 126 NGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Query: 508 VEFLTKLPS 516
V ++
Sbjct: 178 VSTISSFFP 186
Score = 74.1 bits (182), Expect = 3e-15
Identities = 34/219 (15%), Positives = 57/219 (26%), Gaps = 52/219 (23%)
Query: 108 TGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNT 165
T K + LEP + E +S L Q P +W+ + LI
Sbjct: 2 TEDLPKAVVFLEP-QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI-------SSQA 53
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDT 225
+ + + D G Y + T+ L V P +V
Sbjct: 54 SSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVH-IGWL-----LLQAPRWVF----- 100
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSE 284
E + L KV + ++GK K
Sbjct: 101 ----------------------KEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH---- 134
Query: 285 KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNV 322
+ + + + KD G Y + V S + +
Sbjct: 135 -HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 66.4 bits (162), Expect = 2e-12
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 31/198 (15%)
Query: 25 EENSEVTLEVRLVAVPEP-DLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
E VTL+ + PE W++N + S I + +
Sbjct: 20 LEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDD 65
Query: 84 EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPS 142
G Y + + + V +L+ V E + L
Sbjct: 66 SGEYRCQTQLSTLSDPVQLEVH------IGWLLLQAPRWV-FKEEDPIHLRCHSWKNTAL 118
Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAA-NLNVD 201
KV + ++GK K + + + + KD G Y + V S + +
Sbjct: 119 HKVTYLQNGKGRKYFH-----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI- 172
Query: 202 PYEPKESKETPPSPPPYV 219
+ PP
Sbjct: 173 -TQGLAVSTISSFFPPGY 189
Score = 50.3 bits (120), Expect = 4e-07
Identities = 32/255 (12%), Positives = 69/255 (27%), Gaps = 79/255 (30%)
Query: 413 ELP-PEISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKK 469
+LP + + Q +V + + + + D +W+ + I+ +
Sbjct: 4 DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS----------SQA 53
Query: 470 QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQ 529
I +A ++D+GEY C+ + + L V + P
Sbjct: 54 SSYFIDAATVDDSGEYRCQTQLSTLSDP-VQLEVHIG--------WLLLQAP-------- 96
Query: 530 VELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 589
KE+ I L + A
Sbjct: 97 -------------------------------------RWVFKEEDPIHLRCHSWKNTALH 119
Query: 590 -IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 648
+ + +N K N + +A + D+G Y + + V
Sbjct: 120 KVTYLQNGKGRKYF--------HHNSDFYIPKA-TLKDSGSYFCRGLVGSKNVS-SETVQ 169
Query: 649 VDV-EKVGRPPINSI 662
+ + + + I+S
Sbjct: 170 ITITQGLAVSTISSF 184
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 82.2 bits (203), Expect = 2e-16
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 110 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTH 166
+P + + + EG+SA +V P V W+KD + +K N +
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 538
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
LT+ + DKG Y+V+ N GT E LNV
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 82.2 bits (203), Expect = 2e-16
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 232 KPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR---QITSEKNTH 288
+P + + + EG+SA +V P V W+KD + +K N +
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 538
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
LT+ + DKG Y+V+ N GT E LNV
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 72.6 bits (178), Expect = 2e-13
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 607
P FI + V E + +V AS P + W ++++ L S K +
Sbjct: 472 RDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK 531
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
++G + L + + D G+Y V A N G+ + V
Sbjct: 532 RYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 64.9 bits (158), Expect = 5e-11
Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
Query: 274 KLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKL 333
+ K R K + + S++ + A + + + FI K
Sbjct: 430 RYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKP 489
Query: 334 DDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHD 392
EV E ++A V S V W KD +E+K S K G L I + D
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549
Query: 393 EGEYTC----SLPDQETSAELNV 411
+GEYT S +E LNV
Sbjct: 550 KGEYTVRAKNSYGTKEEIVFLNV 572
Score = 59.1 bits (143), Expect = 3e-09
Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 22/191 (11%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLL--- 384
+FI+KL + R + W G ++ + IR +
Sbjct: 389 DFIRKLLLADPNTRMTIH---QALEHP----WLTPGNAPGRDSQIPSSRYTKIRDSIKTK 441
Query: 385 ----------IRNISVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKAS 434
+ IS + A + E P V +V + A+
Sbjct: 442 YDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSAN 501
Query: 435 FEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DT 492
F + +V W+KD +E+ S +G L I +D GEY+ R
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561
Query: 493 GDKESKATLTV 503
G KE L V
Sbjct: 562 GTKEEIVFLNV 572
Score = 57.5 bits (139), Expect = 1e-08
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P F K E R++A P + W+ + L+++ + + + +
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-- 539
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
+TI +K ++G YTV AKN G + + + V
Sbjct: 540 --LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 74.4 bits (183), Expect = 2e-16
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-- 614
I E T I VK +P P++ WF N L S N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPF--TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 615 ---ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
L+L + + GDY ++A NE G +G P I+
Sbjct: 60 YHGCLQLDNP-THMNNGDYTLIAKNEYGKDEKQISAHF----MGWPGID 103
Score = 67.5 bits (165), Expect = 6e-14
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS-Y 70
PT + P + + + P+P L W+YNG L E+ + H+ Y
Sbjct: 4 APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
+ + + G YT++AKN G+ + I P I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM----GWPGI 102
Score = 62.1 bits (151), Expect = 4e-12
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKNT 165
P+I S T + V G P P ++W+ +G ++ + +
Sbjct: 5 PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 166 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
L L + + G Y++ N+ G E + +
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 62.1 bits (151), Expect = 4e-12
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKNT 287
P+I S T + V G P P ++W+ +G ++ + +
Sbjct: 5 PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L L + + G Y++ N+ G E + +
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 59.0 bits (143), Expect = 6e-11
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 337 EVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR-----KLLIRNISV 390
+ + V + K ++WF +G + SK + + T L + N +
Sbjct: 12 SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71
Query: 391 HDEGEYTC----SLPDQETSAELNVVELPP 416
+ G+YT E + + P
Sbjct: 72 MNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 47.4 bits (113), Expect = 5e-07
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
V P I+ + D + G+ ++W+ +G + S+ + I
Sbjct: 1 VHFAPTITFLE---SPTSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 470 Q-----KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
L + + + G+Y+ + G E + +
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVKGKAE 746
V AP I P I K P P +W NG ++ SK + K
Sbjct: 1 VHFAPTITFLESPTS----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIH 53
Score = 28.6 bits (64), Expect = 2.9
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 755 EVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
+ + V + K ++WF N +++
Sbjct: 12 SPTSDHHWCIPFTVKGNPKPALQWFYNGAILN 43
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 76.1 bits (187), Expect = 4e-16
Identities = 32/215 (14%), Positives = 60/215 (27%), Gaps = 57/215 (26%)
Query: 122 DVSITEGESAVLSVQ--VGGEPSPKVEWYKDGKLIKDRQITSEKNTH------------T 167
+ G+ L + + ++W K K Q EK T T
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
L + T D+ Y V + + +G ++ E
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER---------------------- 105
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
KP I + L+ +V P++ Y+DGK + K +
Sbjct: 106 -----VSKPKI--------SWTCINTTLTCEVMNGTDPELNLYQDGKHL--------KLS 144
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + +T ++ NK S ++
Sbjct: 145 QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 74.9 bits (184), Expect = 1e-15
Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 24/190 (12%)
Query: 19 TKPVYAEENSEVTLEVRLVAV--PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIV-- 74
+ ++ L++ + D+ W + + + +
Sbjct: 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN 65
Query: 75 ---TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN-TGKPEKPSILEPLHDVSITEGES 130
IK +K ++ +Y V + +G+ ++ + + KP I +
Sbjct: 66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKI--------SWTCIN 117
Query: 131 AVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
L+ +V P++ Y+DGK + K + + + +T ++ NK
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHL--------KLSQRVITHKWTTSLSAKFKCTAGNKVS 169
Query: 191 TVESAANLNV 200
S ++
Sbjct: 170 KESSVEPVSC 179
Score = 53.7 bits (129), Expect = 2e-08
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 38/180 (21%)
Query: 345 VLEVEVTSDKADVKWFKDGQEIKTS----KKVTIEKKGTIR-----KLLIRNISVHDEGE 395
+ +++ D D+KW K + K + +K T ++K T + L I+++ D+
Sbjct: 21 IPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDI 80
Query: 396 YTCSLPDQ------ETSAELNVVELP--PEISVPLQDVKVSRDEKASFEIELTKG-DALV 446
Y S+ D E +L + E P+IS + + E+ G D +
Sbjct: 81 YKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINT--------TLTCEVMNGTDPEL 132
Query: 447 KWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
Y+DGK + S Q++I + ++ C G+ KES + V P
Sbjct: 133 NLYQDGKHLKLS-----------QRVITHKWTTSLSAKFKCTAGNKVSKES-SVEPVSCP 180
Score = 51.0 bits (122), Expect = 2e-07
Identities = 33/224 (14%), Positives = 61/224 (27%), Gaps = 76/224 (33%)
Query: 430 DEKASFEIELTKGDALVKWYKDGKE-IAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
D+ + E T + ++ KE + L +G L I +D Y
Sbjct: 28 DDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT---LKIKHLKTDDQDIYKVS 84
Query: 489 VGDTGDK---ESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLF 545
+ DT K E L + Q +S P I +N
Sbjct: 85 IYDTKGKNVLEKIFDLKI-------------------------QERVSKPKISWTCINTT 119
Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK 605
+ TC +V P + +++ K L S +
Sbjct: 120 L--TC------------------------------EVMNGTDPELNLYQDGKHLKLSQR- 146
Query: 606 REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
I + + + + +K A N++ + V+
Sbjct: 147 -------VITHKW----TTSLSAKFKCTAGNKVSKESSVEPVSC 179
Score = 45.3 bits (107), Expect = 2e-05
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKS 78
+KP + TL ++ +P+L Y +G+ L+ + V
Sbjct: 107 SKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR---------------VITHK 151
Query: 79 IKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEK 113
+ A N+ + PV PEK
Sbjct: 152 WTTSLSAKFKCTAGNKVSKESSVEPVSC----PEK 182
Score = 38.3 bits (89), Expect = 0.003
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 642
K S I FR K ++F +N L++K ++ D YKV + G
Sbjct: 37 KTSDKKKIAQFRKEKETFKEKDTYKLF--KNGTLKIKHLKTD-DQDIYKVSIYDTKGKNV 93
Query: 643 HGARVTVDV-EKVGRPPINS 661
+ + E+V +P I+
Sbjct: 94 LEKIFDLKIQERVSKPKISW 113
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 72.2 bits (177), Expect = 2e-15
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
PP +P E +E + P P L W +NG+PL+E+ + +
Sbjct: 8 PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
+ G YT++AKN G A I +P + P +++T
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF-LKEPFPVDEVSPTPPITVT 118
Score = 68.3 bits (167), Expect = 4e-14
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-------DRQITSEKNTH 166
P ++ + V G P P + W +G+ ++ + E +
Sbjct: 9 PRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
L + + + G Y++ N GT N + EP E P+PP
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL-KEPFPVDEVSPTPP 114
Score = 67.1 bits (164), Expect = 1e-13
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 615
P + EE ++ + I V+ +P P++ W N +PL S + E I
Sbjct: 6 YYPPRVVSLEEPELRLEHCIE--FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 616 ---LELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
L + + + G+Y ++A N LG+A
Sbjct: 64 EGCLLFNKP-THYNNGNYTLIAKNPLGTANQTINGHFLK 101
Score = 62.1 bits (151), Expect = 6e-12
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK-------DRQITSEKNTH 288
P ++ + V G P P + W +G+ ++ + E +
Sbjct: 9 PRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L + + + G Y++ N GT N +
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 53.7 bits (129), Expect = 6e-09
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 336 LEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIR----KLLIRNISV 390
E + R +E V + + W +GQ ++ SK + +E LL +
Sbjct: 15 EEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH 74
Query: 391 HDEGEYTC----SLPDQETSAELNVVELPPEIS 419
++ G YT L + + ++ P +
Sbjct: 75 YNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD 107
Score = 46.3 bits (110), Expect = 2e-06
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 11/112 (9%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKK 469
V PP + + + E + G+ + W +G+ + S+ + + +
Sbjct: 5 VYYPPRVVSLEEPELR---LEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60
Query: 470 Q----KLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAPAVEFLTKLPS 516
+ L+ + G Y+ G P+
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPT 112
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
V P + PE+ + IE + PPP W NG + SK +
Sbjct: 5 VYYPPRVVSLEEPEL----RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIH 53
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 71.9 bits (176), Expect = 3e-15
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDG------------KLIKDRQ 158
+E ++ GE +V E P ++W+K +L + +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
S T + +I+ G Y +VT K+ + +L V E + S P
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH--ESTGTTPNIDSGP 123
Score = 70.0 bits (171), Expect = 2e-14
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 553 GSPGQ-APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREI 608
GS G LFIE+ + TVK I +AKVKA P+I WF+ L+S + +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 609 ---------FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPI 659
+++ +A + AG+Y+ T + + + V P I
Sbjct: 61 QLKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
Query: 660 NS 661
+S
Sbjct: 120 DS 121
Score = 68.9 bits (168), Expect = 4e-14
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPS---PKVEWYKDG------------KLIKDRQ 280
+E ++ GE +V E P ++W+K +L + +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
S T + +I+ G Y +VT K+ + +L V +
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
Score = 57.3 bits (138), Expect = 4e-10
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 17/106 (16%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKD---------GQEIKTSKKVTIE 375
FI+K VK E+ +V ++ K +KWFK G+ ++ +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69
Query: 376 KKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPE 417
+ ++ I + G Y C S +L V E
Sbjct: 70 SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
Score = 48.5 bits (115), Expect = 4e-07
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 8/113 (7%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGEPLQETDE---VVFSDQS 65
F +K + + ++T ++ A +P + W+ + + +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 66 DMHS--YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
+ HS Y + I K G Y ++ ++V+ P+I
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
Score = 47.7 bits (113), Expect = 1e-06
Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 14/100 (14%)
Query: 421 PLQDVKVSRDEKASFEIELTKGDAL----VKWYKD---------GKEIAFSENVTLSIDG 467
Q V E +F ++ D L +KW+K GK + E
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 468 KKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
++ I A AG Y C V L V
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112
Score = 35.4 bits (81), Expect = 0.019
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 747 FIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKNNSL 783
FI+K VK E+ +V ++ K +KWFK +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM 50
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 70.9 bits (174), Expect = 3e-15
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 173
S + + G+ L ++ + + W +DG + + T + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE-EVEVQDS 61
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
D G Y+ ++ G+ + ++NV + PS P
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVNV--------SDALPSGPS 97
Score = 67.0 bits (164), Expect = 8e-14
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQC 295
S + + G+ L ++ + + W +DG + + T + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE-EVEVQDS 61
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNV 322
D G Y+ ++ G+ + ++NV
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 66.6 bits (163), Expect = 1e-13
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
G + E V ++L +++ SI W R+ L S R GE
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN--RTRITGEE-- 55
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
+E++++ D+G Y V ++ GS T V V + + P +
Sbjct: 56 VEVQDSVPA-DSGLYACVTSSPSGSDTTYFSVNV-SDALPSGPSS 98
Score = 60.5 bits (147), Expect = 1e-11
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
+++ V + L + D + W +DG ++ S + I ++ +++
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRITG----EEVEVQD 60
Query: 388 ISVHDEGEYTC----SLPDQETSAELNVVELPP 416
D G Y C T +NV + P
Sbjct: 61 SVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 58.9 bits (143), Expect = 5e-11
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
V ++ V + L + W +DG ++A S ++ +++ +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRIT----GEEVEV 58
Query: 475 FSAGLEDAGEYSCRVG-DTGDKESKATLTV-EAPA 507
+ D+G Y+C +G + ++ V +A
Sbjct: 59 QDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 55.9 bits (135), Expect = 7e-10
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
G + + + + L RL + W +G L E++ + +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEE---- 55
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
V ++ + G+Y V + G V V+ P PS
Sbjct: 56 ----VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
Score = 32.0 bits (73), Expect = 0.14
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 692 TAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
++ LV G+ L++ R + W +G + S R +
Sbjct: 2 SSGSSGVEVES-FLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTR 50
Score = 27.7 bits (62), Expect = 4.1
Identities = 4/40 (10%), Positives = 13/40 (32%)
Query: 746 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKNNSLIK 785
+++ V + L + D + W ++ +
Sbjct: 5 SSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLA 44
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 72.6 bits (177), Expect = 8e-15
Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 24/192 (12%)
Query: 123 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS-TKDKGRY 181
VSI+ G S L+ + + ++W K+G+ + K+ L L S +D G Y
Sbjct: 10 VSIS-GTSVELTCPL--DSDENLKWEKNGQELPQ------KHDKHLVLQDFSEVEDSGYY 60
Query: 182 SVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEP 241
V + + ++ D Q N K
Sbjct: 61 VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKN-------L 113
Query: 242 LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKG 301
+ S +L+ + ++W KDG +I +T L + +G
Sbjct: 114 VQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIIS----PLNATKNTWNLGNNAKDPRG 166
Query: 302 RYSVKVTNKEGT 313
Y + +
Sbjct: 167 TYQCQGAKETSN 178
Score = 60.3 bits (145), Expect = 2e-10
Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 41/186 (22%)
Query: 245 VSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS-TKDKGRY 303
VSI+ G S L+ + + ++W K+G+ + K+ L L S +D G Y
Sbjct: 10 VSIS-GTSVELTCPL--DSDENLKWEKNGQELPQ------KHDKHLVLQDFSEVEDSGYY 60
Query: 304 SVKVTNKEGT--------VESAANLNVDQGKAEFIKKLD---------------DLEVKE 340
V SA + D K + KK D ++
Sbjct: 61 VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR 120
Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSL 400
+ +VL + +KW KDG I + N + G Y C
Sbjct: 121 GDGSVL-LTCGLTDKTIKWLKDGSIISPLNATK-------NTWNLGNNAKDPRGTYQCQG 172
Query: 401 PDQETS 406
+ ++
Sbjct: 173 AKETSN 178
Score = 52.2 bits (124), Expect = 8e-08
Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 47/179 (26%)
Query: 352 SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNIS-VHDEGEYTCSLPDQETSAEL- 409
++KW K+GQE+ + L++++ S V D G Y C P + L
Sbjct: 24 DSDENLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLY 74
Query: 410 ---NVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVK------------------- 447
V + +D+ + K LV+
Sbjct: 75 LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDK 134
Query: 448 ---WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTV 503
W KDG I+ ++ K + + + G Y C+ G KE+ L V
Sbjct: 135 TIKWLKDGSIIS-------PLNATKNTWNLGNNAKDPRGTYQCQ----GAKETSNPLQV 182
Score = 47.9 bits (113), Expect = 2e-06
Identities = 26/203 (12%), Positives = 55/203 (27%), Gaps = 45/203 (22%)
Query: 441 KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKAT 500
D +KW K+G+E+ + L + + +ED+G Y C
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSE--------VEDSGYYVCYT---PASNKNTY 72
Query: 501 LTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPL 560
L ++A V + + + D K + Q
Sbjct: 73 LYLKA----------RVGSADDAKKDAAKKDDAKKDDAKKDGS-------------QTNK 109
Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 620
+ + G++ L +I W ++ + + ++ N +
Sbjct: 110 AKNLVQVDGSRGDGSVLLTCG---LTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD--- 163
Query: 621 ADSETDAGDYKVVATNELGSATH 643
G Y+ E +
Sbjct: 164 -----PRGTYQCQGAKETSNPLQ 181
Score = 40.6 bits (94), Expect = 7e-04
Identities = 18/173 (10%), Positives = 43/173 (24%), Gaps = 35/173 (20%)
Query: 584 ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 643
++ W +N + + + L L++ D+G Y +
Sbjct: 23 LDSDENLKWEKNGQE---------LPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL 73
Query: 644 GARVTVDVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPE 703
+ V + D ++ + + A
Sbjct: 74 YLKARV-----------------------GSADDAKKDAAKKDDAKKDDAKKDGSQTNKA 110
Query: 704 VLVKKGEDLKIE--VRFK-ALPPPKAEWTVNGTVIVPSKRVKGKAEFIKKLDD 753
+ + + + + V L +W +G++I P K D
Sbjct: 111 KNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD 163
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 71.5 bits (175), Expect = 1e-14
Identities = 24/191 (12%), Positives = 65/191 (34%), Gaps = 24/191 (12%)
Query: 17 KKTKPVYAEENSEVTLEVRLVAVPE--PDLLWYYNGEPLQE----TDEVVFSDQSDMHSY 70
+ + V+ + L + + + ++ W + E + S ++ +
Sbjct: 1 RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP-EKPSILEPLHDVSITEGE 129
+ IK++ + + G Y V + G ++ + + + KP I E
Sbjct: 61 GDL-KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMI--------YWECS 111
Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKE 189
+A L+ +V +++ Y+ + + ++ T+ T + + K N+
Sbjct: 112 NATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKAVNRV 163
Query: 190 GTVESAANLNV 200
+N
Sbjct: 164 SQESEMEVVNC 174
Score = 67.3 bits (164), Expect = 4e-13
Identities = 29/214 (13%), Positives = 60/214 (28%), Gaps = 55/214 (25%)
Query: 121 HDVSITEGESAVLSVQV--GGEPSPKVEWYKDGKLIKDRQITSEKNTH----------TL 168
V G L++ + +V W + L+ + + + L
Sbjct: 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 63
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQV 228
+ + D G Y+V V + GT L++ E
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM----------------------- 100
Query: 229 NTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH 288
KP I E +A L+ +V +++ Y+ + + ++
Sbjct: 101 ----VSKPMI--------YWECSNATLTCEVLEGTDVELKLYQGKEHL--------RSLR 140
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T+ T + + K N+ +N
Sbjct: 141 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 56.5 bits (136), Expect = 2e-09
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 26/173 (15%)
Query: 345 VLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK-------LLIRNISVHDEGEYT 397
+ ++T D +V+W + + K+ + L I+N++ D G Y
Sbjct: 18 IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77
Query: 398 CSLPDQETSAELNV---VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL-VKWYKDGK 453
++ + LN + + +S P+ + S A+ E+ +G + +K Y+ +
Sbjct: 78 VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSN---ATLTCEVLEGTDVELKLYQGKE 134
Query: 454 EIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
+ T+S + C+ + +ES V P
Sbjct: 135 HLRSLRQKTMSYQWT-----------NLRAPFKCKAVNRVSQES-EMEVVNCP 175
Score = 47.3 bits (112), Expect = 3e-06
Identities = 25/212 (11%), Positives = 49/212 (23%), Gaps = 75/212 (35%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRVGDT-GDKES 497
V+W + +A + L I + +D+G Y+ V T G +
Sbjct: 30 VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89
Query: 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQ 557
L + +S P I + N + TC
Sbjct: 90 NKALDL-----------------------RILEMVSKPMIYWECSNATL--TC------- 117
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 617
+V + ++ + L S +
Sbjct: 118 -----------------------EVLEGTDVELKLYQGKEHLRSL---------RQKTMS 145
Query: 618 LKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ + +K A N + + V
Sbjct: 146 YQWTN---LRAPFKCKAVNRVSQESEMEVVNC 174
Score = 40.7 bits (95), Expect = 5e-04
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 583 KASPAPSIVWFRNNKPLLSSPKKREIF-------DGENIILELKEADSETDAGDYKVVAT 635
+ W R + + +K + F N L++K + D+G Y V
Sbjct: 23 MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNVTVY 81
Query: 636 NELGSATHGARVTV-DVEKVGRPPIN 660
+ G+ + + +E V +P I
Sbjct: 82 STNGTRILNKALDLRILEMVSKPMIY 107
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 71.2 bits (174), Expect = 3e-14
Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 17/204 (8%)
Query: 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSD-----QSDMHSYVSI 73
+ + S V+LE +L E D + S+ + + ++
Sbjct: 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKAL 68
Query: 74 VTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVL 133
I S++ R+ G Y + + VKV + + + L
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDT-----RILEVPGTGEVQL 123
Query: 134 SVQVGGEPSPKVEWYKD-GKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 192
+ Q G P +V W T E ++++ + +S N
Sbjct: 124 TCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE 183
Query: 193 ESAANLNVDPYEPKESKETPPSPP 216
++A ++ S+ P P
Sbjct: 184 LTSAIIDP------LSRMEPKVPR 201
Score = 63.1 bits (153), Expect = 2e-11
Identities = 24/198 (12%), Positives = 49/198 (24%), Gaps = 17/198 (8%)
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN---------- 286
++ P ++ G S L ++E + + + +
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 287 --THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENA 344
+ +D G+Y V L V + LEV
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWDY--KYLTVKVKASYMRIDTRILEVPGTGEV 121
Query: 345 VLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ 403
L + A+V W TS +G + + + ++C +
Sbjct: 122 QLTCQARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNA 179
Query: 404 ETSAELNVVELPPEISVP 421
+ + P P
Sbjct: 180 HMKELTSAIIDPLSRMEP 197
Score = 61.6 bits (149), Expect = 5e-11
Identities = 21/221 (9%), Positives = 49/221 (22%), Gaps = 46/221 (20%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN---------- 164
++ P ++ G S L ++E + + + +
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 165 --THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
+ +D G+Y V + V
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKAS--------YMRIDT----- 110
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKDRQI 281
+ + L+ Q G P +V W
Sbjct: 111 --------------------RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIR 150
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T E ++++ + +S N ++A ++
Sbjct: 151 TPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Score = 54.7 bits (131), Expect = 1e-08
Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 27/187 (14%)
Query: 342 ENAVLEVEVTSDK-ADVKWFKDGQEIKTSKKVTIEKKGTIRK---------LLIRNISVH 391
+ LE + + +++ + + + ++ T+ + I ++ V
Sbjct: 18 SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77
Query: 392 DEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT---KG-- 442
D G+Y C + V I + +V + E++LT +G
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTG------EVQLTCQARGYP 131
Query: 443 DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLT 502
A V W + + + +G Q + + + +SC + KE + +
Sbjct: 132 LAEVSWQNVSVPA--NTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAII 189
Query: 503 VEAPAVE 509
+E
Sbjct: 190 DPLSRME 196
Score = 42.0 bits (98), Expect = 3e-04
Identities = 32/254 (12%), Positives = 67/254 (26%), Gaps = 71/254 (27%)
Query: 418 ISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEI------AFSENVTLSIDGKKQ 470
++ P + V S E + + ++ + + SE TL +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 471 ---KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
I S + D+G+Y C V + K +T+
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYK-----------------YLTVK------- 100
Query: 528 FQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA 587
+ D ++ V G ++L + + P
Sbjct: 101 VKASYMRIDTRI----------------------------LEVPGTGEVQLTCQARGYPL 132
Query: 588 PSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHG 644
+ W + P +S + +G +L LK + ++ + N
Sbjct: 133 AEVSWQNVSVPANTSHIRTP--EGLYQVTSVLRLK----PQPSRNFSCMFWNAHMKELTS 186
Query: 645 ARVTVDVEKVGRPP 658
A + + P
Sbjct: 187 AIIDPLSRMEPKVP 200
Score = 35.0 bits (80), Expect = 0.054
Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 6/92 (6%)
Query: 8 LEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDM 67
++ T+ + EV L + P ++ W P S
Sbjct: 99 VKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT------SHIRTP 152
Query: 68 HSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
+ ++ +K + ++ + N +
Sbjct: 153 EGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184
Score = 30.0 bits (67), Expect = 2.2
Identities = 12/110 (10%), Positives = 25/110 (22%), Gaps = 10/110 (9%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS----PKKREIFDGENII-----LELK 619
TV ++ L + R + + + +R E + +
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 620 EADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
D+G Y+ + V V + V
Sbjct: 73 SV-QVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEV 121
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 69.3 bits (169), Expect = 3e-14
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 21/124 (16%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ------------ 280
++ G S L + G P P+++W+ +G+ D
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 281 ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDL 336
+ T+++ +D G Y + +N V ++++ +
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV-----KWVRAQAVV 133
Query: 337 EVKE 340
V E
Sbjct: 134 LVLE 137
Score = 69.3 bits (169), Expect = 3e-14
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 16/112 (14%)
Query: 111 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ------------ 158
++ G S L + G P P+++W+ +G+ D
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 159 ----ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
+ T+++ +D G Y + +N V +
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
Score = 60.8 bits (147), Expect = 3e-11
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 17/118 (14%)
Query: 556 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK---------- 605
F++ + G++ L + SP P I W+ + +
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 606 ---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
+ + E D G Y+ A+N+ V K R
Sbjct: 79 HIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHLTRAPRV---KWVRAQAV 132
Score = 56.6 bits (136), Expect = 8e-10
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 9/112 (8%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
F + V L V P P++ W++ G+ + ++
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 70 YV---------SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPE 112
++ S ++I ++ + + G Y A N + +V + +
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
Score = 53.5 bits (128), Expect = 1e-08
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 24/138 (17%)
Query: 301 GRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKW 359
G + G V A F++ + + L E +++W
Sbjct: 2 GSSHHHHHHSSGLVPRG------SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQW 55
Query: 360 FKDGQEIKTSKKVTIEKKGTIRK-------------LLIRNISVHDEGEYTC----SLPD 402
+ +GQ + R + I + D G Y C
Sbjct: 56 WFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDR 115
Query: 403 QETSAELNVVELPPEISV 420
+ V + + V
Sbjct: 116 NHLTRAPRVKWVRAQAVV 133
Score = 45.0 bits (106), Expect = 1e-05
Identities = 13/108 (12%), Positives = 24/108 (22%), Gaps = 17/108 (15%)
Query: 412 VELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFSENVTLSIDGKK 469
+ E G + ++W+ +G+ +
Sbjct: 18 GSHMAGFVQAPLSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 470 QK-------------LIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
+ + I + ED G Y CR D V
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 65.4 bits (159), Expect = 3e-13
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 15/104 (14%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGKLIKDR------------Q 280
+ D +T G S S +V G P V+W+K +
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
S+ L + G Y +V+ K+ S NL V +
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 64.6 bits (157), Expect = 6e-13
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKDGKLIKDR------------Q 158
+ D +T G S S +V G P V+W+K +
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
S+ L + G Y +V+ K+ S NL V
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 60.4 bits (146), Expect = 2e-11
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLLSSPKKREIFDGENI 614
LF+ R ++ V G+I A+V + P + WF+ LSS + + ++
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 615 ---------ILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
L + +A G Y+ + + +TV
Sbjct: 64 DRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 53.5 bits (128), Expect = 6e-09
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 17/102 (16%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSD----KADVKWFKD---------GQEIKTSKKVTIE 375
F+ + D EV + V VKWFK GQ ++
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 376 KKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
K + +L I + G Y C ++ L V E
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 46.5 bits (110), Expect = 2e-06
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 413 ELPPEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYKD---------GKEIAFSE 459
+ + QD +V+ +F + L VKW+K G+ + +
Sbjct: 2 DPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
+ + +L I A G Y C V S LTV
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 41.9 bits (98), Expect = 6e-05
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVP---EPDLLWYYNGE---PLQETDEVVFS 62
+ F + + +T R+ P + W+ + +
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 63 DQSDMHS--YVSIVTIKSIKKREEGVYTVVAKNREGEA 98
D D S Y+ + I + G Y ++
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD 98
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 64.8 bits (158), Expect = 4e-13
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 111 PEKPSILEP------LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN 164
P P +P + + + G+ L ++ + W +DG + + T
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG 59
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ + D G Y+ ++ G+ + ++NV
Sbjct: 60 -EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 64.8 bits (158), Expect = 4e-13
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 233 PEKPSILEP------LHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKN 286
P P +P + + + G+ L ++ + W +DG + + T
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG 59
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ + D G Y+ ++ G+ + ++NV
Sbjct: 60 -EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 61.7 bits (150), Expect = 5e-12
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 548 PTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 607
PT P Q E V ++L +++ SI W R+ L+ S + R
Sbjct: 1 PTLP--EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI 57
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ +E++++ D+G Y V ++ GS T V V
Sbjct: 58 TGE----EVEVRDSIPA-DSGLYACVTSSPSGSDTTYFSVNV 94
Score = 57.5 bits (139), Expect = 2e-10
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLII 474
P + V ++ + V + L + W +DG ++ S ++ +++ +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRIT----GEEVEV 64
Query: 475 FSAGLEDAGEYSCRV-GDTGDKESKATLTV 503
+ D+G Y+C +G + ++ V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 53.3 bits (128), Expect = 4e-09
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
+++ L V + L + D + W +DG ++ S + I ++ +R+
Sbjct: 12 VPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRITG----EEVEVRDS 67
Query: 389 SVHDEGEYTC----SLPDQETSAELNV 411
D G Y C T +NV
Sbjct: 68 IPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 48.6 bits (116), Expect = 2e-07
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P + + + + L R + + W +G L E++ +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCR-LRDDVQSINWLRDGVQLVESNRTRITG-------- 59
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
V ++ + G+Y V + G V V
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 39.0 bits (91), Expect = 4e-04
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRVK 742
P + P P +LV G+ L++ R + W +G +V S R +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTR 56
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 65.2 bits (159), Expect = 5e-13
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 558 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-----DGE 612
P +E + V + L K + P P+I W++ + + + G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 613 NIILELKEA-DSETDAGDYKVVATNELGSA-THGARVTVDVEKVGRPPINSIDIDRNHVH 670
L + S D G Y VA N LG A +H A + V +H H
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA-----AA-------HHHHH 116
Query: 671 H 671
H
Sbjct: 117 H 117
Score = 64.1 bits (156), Expect = 1e-12
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 286
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 287 THTLTLI--QCSTKDKGRYSVKVTNKEGTVESA-ANLNVDQGKAEFIKK 332
L ++ + S D+G Y N G S A+L V A
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV-AAAAHHHHH 116
Score = 62.9 bits (153), Expect = 3e-12
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 113 KPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD--------RQITSEKN 164
P I+E D+ +++GE A L+ + G P+P +EWYK G+ ++ R + +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 165 THTLTLI--QCSTKDKGRYSVKVTNKEGTVESA-ANLNV 200
L ++ + S D+G Y N G S A+L V
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 53.3 bits (128), Expect = 7e-09
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 407 AELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAFS-----E 459
L + PP I D+ VS+ E A+ + +G ++WYK G+ +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCK-AEGRPTPTIEWYKGGERVETDKDDPRS 59
Query: 460 NVTLSIDGKKQKLIIFSAGL--EDAGEYSC----RVGDTGDKESKATLTVEAPA 507
+ L G L I D G Y C +G+ A+L V A A
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH--DASLEVAAAA 111
Score = 52.1 bits (125), Expect = 2e-08
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 9 EGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMH 68
E PP + + + TL + P P + WY GE ++ + S + +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 69 S---YVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
S + + + +EGVY VA+N GEA
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
Score = 48.3 bits (115), Expect = 4e-07
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 318 ANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEK 376
+L + ++ DL V + E A L + ++W+K G+ ++T K
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 377 K-----GT--IRKLLIRNISVHDEGEYTC 398
+ G+ +++ S DEG Y C
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVC 89
Score = 30.5 bits (69), Expect = 0.59
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 739 KRVKGKAEFIKKLDDLEVKERENAVLEVEVTSD-KADVKWFKNNSLIK 785
++ ++ DL V + E A L + ++W+K ++
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVE 51
Score = 29.4 bits (66), Expect = 1.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSK 739
+ + P I P +++V KGE + + + P P EW G + K
Sbjct: 4 RQEDFPPRIVEHPS-DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 69.1 bits (168), Expect = 5e-13
Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 60/255 (23%)
Query: 12 PPTFSKKTKPVYAEENSEVTLE---VRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSD-- 66
P + + + V + R + W ++ + ++ V+F +
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 67 ---------------MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKP 111
H+ S+ ++ ++K +EG+YT + + M PV++ P
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSL-LLQDVQKADEGIYTCEIRLKNESMVMKKPVEL-WVLP 122
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSP---KVEWYKDGKLIKDRQIT-------- 160
E+P D+ + G++ + + KV W + +
Sbjct: 123 EEP------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 161 -------------------SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 201
+N ++ L D+G Y+ + + L+V
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Query: 202 PYEPKESKETPPSPP 216
E + + P+PP
Sbjct: 237 QDEFQRT--ISPTPP 249
Score = 55.6 bits (133), Expect = 1e-08
Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 39/247 (15%)
Query: 114 PSILEPLHDVSITEGESAVLSVQV---GGEPSPKVEWYKDGKLIKDRQI----------- 159
P + + + GES ++ V + +V+W +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 160 ------------TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKE 207
+ N +L L D+G Y+ ++ K ++ + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------- 118
Query: 208 SKETPPSPPPYVVSELDTLQ----VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEP 263
P P V DT Q + + + ++ + + + E VLS
Sbjct: 119 -WVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 264 SPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
+ + S +N ++ L D+G Y+ + + L+V
Sbjct: 178 GKFQSLGRFRNRVDLTGDIS-RNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Query: 324 QGKAEFI 330
Q + +
Sbjct: 237 QDEFQRT 243
Score = 49.9 bits (118), Expect = 1e-06
Identities = 36/241 (14%), Positives = 63/241 (26%), Gaps = 53/241 (21%)
Query: 324 QGKAEFIKKLDDLEVKERENAVLEVEVTS----DKADVKWFKDGQEIKTSKKVTIEKKGT 379
QG L V E+ ++ V V W + S+ V
Sbjct: 3 QGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNL 62
Query: 380 IRK--------------------LLIRNISVHDEGEYTCSLPDQETSAELNVVELPPEIS 419
LL++++ DEG YTC + + S + +
Sbjct: 63 SVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP 122
Query: 420 VPLQDVKVSRDEKA----SFEIELTKGDALVKWYKDGKEIA------------------- 456
+D++V + S + K V W
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 457 ---FSENVTLSIDGKKQK--LIIFSAGLEDAGEYSCRVGDTGDKESK-ATLTVEAPAVEF 510
F V L+ D + + + + D G Y+C + + K L V +
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Query: 511 L 511
Sbjct: 243 T 243
Score = 49.5 bits (117), Expect = 2e-06
Identities = 38/296 (12%), Positives = 77/296 (26%), Gaps = 72/296 (24%)
Query: 415 PPEISVPLQDVKVSRDEKA----SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
P ++V ++V E + K V W + SE V
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 471 K--------------------LIIFSAGLEDAGEYSCRVGDTGDKES-KATLTVEAPAVE 509
L++ D G Y+C + + K + +
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--- 121
Query: 510 FLTKLPSVTLVPHLGDATFQVELSS----PDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
+ P V + + S +V W+
Sbjct: 122 --PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM---------------------FS 158
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
+E+ + + +++ S+ FRN L + + ++L+ E+
Sbjct: 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRN------DGSIKLQTV-KES 211
Query: 626 DAGDYKVVATNELGSATHGARVTVDVE--KVGRPPINSIDI--------DRNHVHH 671
D G Y + + V + + P D +++H HH
Sbjct: 212 DQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILNGNQHHHHH 267
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 64.9 bits (158), Expect = 7e-13
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 7/109 (6%)
Query: 557 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKR------EIF 609
P I + + ++ ++++P P I W L S R
Sbjct: 12 NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 610 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPP 658
+G L + Y A N GS T R+ ++ P
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120
Score = 58.4 bits (141), Expect = 2e-10
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQETDE--VVFSDQSDM 67
PP S T+ +A + ++ + + P PD + W + L+ S
Sbjct: 13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 68 HSYVSIVTIKSIKKR-EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+S +TI +I + + +Y A N G I +K + PS
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 120
Score = 58.0 bits (140), Expect = 2e-10
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 16/118 (13%)
Query: 96 GEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLI 154
G + + VN P I+ GE + + P P ++ W ++
Sbjct: 1 GSSGSSGTLTVNG-----PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
Query: 155 KD---------RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNVDP 202
+ T E TLT+ D Y+ N G+ L
Sbjct: 56 ESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Score = 55.7 bits (134), Expect = 1e-09
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKD----- 278
TL VN P I+ GE + + P P ++ W +++
Sbjct: 8 TLTVNG-----PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62
Query: 279 ----RQITSEKNTHTLTLIQCSTKDKGR-YSVKVTNKEGTVESAANLNV 322
T E TLT+ D Y+ N G+ L
Sbjct: 63 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 49.1 bits (117), Expect = 2e-07
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 312 GTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSDKA--DVKWFKDGQEI--K 367
G+ S+ L V I E ++ + S + W +
Sbjct: 1 GSSGSSGTLTV--NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 368 TSKKVTIEKK----GTIRKLLIRNISVHDEG-EYTCSLPDQ--ETSAELNVVELPPEISV 420
TS + T+E G I L I NI D Y C+ + + + + E E+S
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 118
Query: 421 P 421
P
Sbjct: 119 P 119
Score = 47.2 bits (112), Expect = 1e-06
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 14/118 (11%)
Query: 402 DQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD---ALVKWYKDGKEIA-- 456
+S L V PP IS Q EK + + + W +
Sbjct: 2 SSGSSGTLTVNG-PPIISST-QTQHALHGEKGQIKCF-IRSTPPPDRIAWSWKENVLESG 58
Query: 457 ----FSENVTLSIDGKKQKLIIFSAGLED-AGEYSCRVG-DTGDKESKATLTVEAPAV 508
++ + +G L I + D Y+C G L + +
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
Score = 30.2 bits (68), Expect = 0.79
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 681 STEVDVEKPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKA-EWTVNGTVIVPS 738
S+ V P+I GE +I+ ++ PPP W+ V+
Sbjct: 2 SSGSSGTLTVNGPPIISSTQT--QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG 58
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 67.6 bits (165), Expect = 3e-12
Identities = 45/293 (15%), Positives = 79/293 (26%), Gaps = 27/293 (9%)
Query: 217 PYVVSEL-DTLQ-VNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDG 273
+ S D + + G +KP + P V G L YK+
Sbjct: 4 HHHGSGSDDDDKGSHMGGQDKPFLSAWPSAVV--PRGGHVTLRCH-YRHRFNNFMLYKED 60
Query: 274 KLIKDRQITSEKNTHTLTLIQCSTKDKGRY----SVKVTNKEGTVESAA-NLNVDQG-KA 327
++ + + +T G Y S + + S + V +
Sbjct: 61 RI-HIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRK 119
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKV-TIEKKGTIRKLLIR 386
+ VK E +L+ K+G S+ V I + I
Sbjct: 120 PSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIG 179
Query: 387 NISVHDEGEYTCS----LPDQETSA-----ELNVVELPPEISVPLQ-DVKVSRDEKASFE 436
+ + G Y C + SA ++ V + S+ Q KV E +
Sbjct: 180 PMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLS 239
Query: 437 IELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAG-LEDAGEYSCR 488
+ ++G ++ Q F G G Y C
Sbjct: 240 CSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQAD--FPLGPATHGGTYRCF 290
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 65.1 bits (158), Expect = 5e-12
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 383 LLIRNISVHDEGEYTCSL-----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
L + + V DEG YTC + L V+ P+ + +Q V+++ +
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA-KPQNTAEVQKVQLTGEPVPMARC 138
Query: 438 ELTKG--DALVKWYKDGKEIAFSENVTLSIDGK---KQKLIIFSAGLEDAGEYSCRV--- 489
T G A + W+ D + + V + G I+ + D + +C+V
Sbjct: 139 VSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHE 198
Query: 490 GDTGDKESKATLTVEAP 506
+ +LTV P
Sbjct: 199 SFEKPQLLTVSLTVYYP 215
Score = 48.2 bits (114), Expect = 3e-06
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 74 VTIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAV 132
+ + ++ +EG YT + +G +DI ++V KP + V +T +
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV----LAKPQNTAEVQKVQLTGEPVPM 135
Query: 133 LS-VQVGGEPSPKVEWYKDGK-LIKDRQITSEKN-----THTLTLIQCSTKDKGRYSVKV 185
V GG P ++ W+ D + + Q+ + T L+ S D + + KV
Sbjct: 136 ARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKV 195
Query: 186 TNKEGTVESAANLNVDPYEP 205
++ +++ Y P
Sbjct: 196 EHESFEKPQLLTVSLTVYYP 215
Score = 46.6 bits (110), Expect = 9e-06
Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 68/243 (27%)
Query: 116 ILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEWYKDGK------------------ 152
+++ V G+S L + ++ W + G+
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 153 ----LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV-TNKEGTVESAANLNVDPYEPKE 207
+ R ++ +L + +D+G Y+ T +G+ L V
Sbjct: 62 KRLEFVAARLGAELRD-ASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRV------- 113
Query: 208 SKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLS-VQVGGEPSPK 266
KP + V +T + V GG P +
Sbjct: 114 -------------------------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ 148
Query: 267 VEWYKDGK-LIKDRQITSEKN-----THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL 320
+ W+ D + + Q+ + T L+ S D + + KV ++ +
Sbjct: 149 ITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTV 208
Query: 321 NVD 323
++
Sbjct: 209 SLT 211
Score = 42.0 bits (98), Expect = 3e-04
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 31/158 (19%)
Query: 411 VVELPPEISVPL-QDV----KVSRDEKASFEIELTKGDALVKWYKDGKEIA--------- 456
VV+ P ++ L V + + + W + G+ +
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQ------LTWARHGESGSMAVFHQTQG 55
Query: 457 --FSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEA 505
+SE+ L + L +F +ED G Y+C G + L V A
Sbjct: 56 PSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA 115
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLN 543
+ A P Q+ W +
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHS 153
Score = 37.4 bits (86), Expect = 0.011
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 2/97 (2%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P + + + V P + W+ + + +T +V S +
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVP-GFLSGTVTV 174
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVN 107
S+ + + + T ++ E + V +
Sbjct: 175 TSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 61.9 bits (150), Expect = 1e-11
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 581 KVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-------NIILELKEADSETDAGDYKVV 633
V PAPS+ W N L + F + L L + + + G+Y ++
Sbjct: 23 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLL 81
Query: 634 ATNELGSATHGARVTVDVEKVGRPPINSIDIDRNHV 669
A N G A+ P + I +
Sbjct: 82 AANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTS 117
Score = 61.9 bits (150), Expect = 1e-11
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEV---VFSDQSDMH 68
P + V E + + P P L W +NG L ET + ++
Sbjct: 3 MPASVQLHTAV---EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 69 SYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEG 128
+ + G YT++A N G+A I P + + +P+ D + T G
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF-MDNPFEFNPEDPIPDTNSTSG 118
Score = 61.5 bits (149), Expect = 2e-11
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 14/126 (11%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----------DRQITSEK 163
P+ ++ V + V G+P+P + W +G ++ +
Sbjct: 4 PASVQLHTAVE---MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL 223
L L Q + + G Y++ N G ++ P E P P S
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF-MDNPFEFNPEDPIPDTNSTSGD 119
Query: 224 DTLQVN 229
+ +
Sbjct: 120 PVEKKD 125
Score = 56.9 bits (137), Expect = 6e-10
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIK----------DRQITSEK 285
P+ ++ V + V G+P+P + W +G ++ +
Sbjct: 4 PASVQLHTAVE---MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
L L Q + + G Y++ N G ++
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 47.6 bits (113), Expect = 8e-07
Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 12/95 (12%)
Query: 337 EVKERENAVLEVEVTSD-KADVKWFKDGQEIKTSKKVTIEKKGTIRK-------LLIRNI 388
E + + V ++W +G + + + E L +
Sbjct: 11 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 70
Query: 389 SVHDEGEYTC----SLPDQETSAELNVVELPPEIS 419
+ + G YT S ++ P E +
Sbjct: 71 THVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN 105
Score = 43.4 bits (102), Expect = 3e-05
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 8/90 (8%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQK-------LIIFSAGLEDAGEYSCRVG-DTGDKES 497
++W +G + + + L + + G Y+ G +
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91
Query: 498 KATLTVEAPAVEFLTKLPSVTLVPHLGDAT 527
EF + P GD
Sbjct: 92 SIMAAFMDNPFEFNPEDPIPDTNSTSGDPV 121
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 61.0 bits (148), Expect = 1e-11
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 551 PLGSPGQAPLFIERF-EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREI 608
PL +P + + ++V+ + + K+ SPA ++VW R + L P +
Sbjct: 2 PLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRAMD 59
Query: 609 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
F+G IL ++ DAG Y +N A + V V
Sbjct: 60 FNG---ILTIRNVQPS-DAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 55.6 bits (134), Expect = 9e-10
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 111 PEKP--SILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQITSEKNTH 166
P KP +E S+ G P+ + W + + R +
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN---G 62
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
LT+ D G Y +N + A L+V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 55.6 bits (134), Expect = 9e-10
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 233 PEKP--SILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYK-DGKLIKDRQITSEKNTH 288
P KP +E S+ G P+ + W + + R +
Sbjct: 6 PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN---G 62
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
LT+ D G Y +N + A L+V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 46.0 bits (109), Expect = 2e-06
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 9/102 (8%)
Query: 407 AELNVVELPPEISV-PLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTL 463
A L P ++V + V +F + W +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK-LPSRAMD 59
Query: 464 SIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVE 504
+G L I + DAG Y C + + ATL V+
Sbjct: 60 F-NGI---LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 41.3 bits (97), Expect = 8e-05
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 330 IKKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN 387
+++ V+ + S + W + S+ ++ G L IRN
Sbjct: 14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNGI---LTIRN 68
Query: 388 ISVHDEGEYTC----SLPDQETSAELNV 411
+ D G Y C + +A L+V
Sbjct: 69 VQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 35.6 bits (82), Expect = 0.008
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVA-VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
++ + ++VT + P L+W S +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK---------LPSRAMDF 60
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV 106
I+TI++++ + G Y N + + V
Sbjct: 61 NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 32.5 bits (74), Expect = 0.092
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 689 PVETAPVIDPPPPPEVLVKKGEDLKIEVRFKA-LPPPKAEWTVNGTVIVPSKRV 741
++ V+ G D+ K+ P WT +PS+ +
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM 58
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 63.0 bits (153), Expect = 1e-11
Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 26/188 (13%)
Query: 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIV---- 74
++ +Y VT V P ++LW + + E + F S + V +
Sbjct: 2 SQQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 75 --TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAV 132
TI ++ +E Y + + N K + V KP I E +A
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLE---MVSKPMI--------YWECSNAT 109
Query: 133 LSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTV 192
L+ +V +++ Y+ + + ++ T+ T + + K N+
Sbjct: 110 LTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKAVNRVSQE 161
Query: 193 ESAANLNV 200
+N
Sbjct: 162 SEMEVVNC 169
Score = 59.2 bits (143), Expect = 2e-10
Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 63/215 (29%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------KDRQITSEKNTHT 167
+ + V P +V W K + K+R + + + +
Sbjct: 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNR-VYLDTVSGS 61
Query: 168 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQ 227
LT+ ++ D+ Y ++ N T++ L V E
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMK--FFLYV--LEM---------------------- 95
Query: 228 VNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNT 287
KP I E +A L+ +V +++ Y+ + + ++
Sbjct: 96 -----VSKPMI--------YWECSNATLTCEVLEGTDVELKLYQGKEHL--------RSL 134
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
T+ T + + K N+ +N
Sbjct: 135 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
Score = 56.1 bits (135), Expect = 3e-09
Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 38/171 (22%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI--------------KDRQITSEKNTHT 289
+ + V P +V W K + K+R + + + +
Sbjct: 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNR-VYLDTVSGS 61
Query: 290 LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEV-KERENAVLEV 348
LT+ ++ D+ Y ++ N T++ L V ++ + + E NA L
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMK--FFLYV-------LEMVSKPMIYWECSNATLTC 112
Query: 349 EVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
EV ++K ++ + +++ ++ T+ + T + + C
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKC 152
Score = 51.5 bits (123), Expect = 1e-07
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 34/163 (20%)
Query: 342 ENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIR----------KLLIRNISVH 391
N V +V W K ++ + + + L I N++
Sbjct: 11 GNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70
Query: 392 DEGEYTCSLPDQETSAE--LNVVELP--PEISVPLQDVKVSRDEKASFEIELTKGDAL-V 446
DE EY P+ + + L V+E+ P I + ++ E+ +G + +
Sbjct: 71 DEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLT--------CEVLEGTDVEL 122
Query: 447 KWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
K Y+ + + T+S + C+
Sbjct: 123 KLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKCKA 154
Score = 41.1 bits (96), Expect = 3e-04
Identities = 31/237 (13%), Positives = 53/237 (22%), Gaps = 80/237 (33%)
Query: 423 QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ----------KL 472
Q + +F + V W K ++A EN + L
Sbjct: 3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVEL 532
I++ D EY + K L V +
Sbjct: 63 TIYNLTSSDEDEYEMESPNI-TDTMKFFLYVLEM-------------------------V 96
Query: 533 SSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 592
S P I + N + TC +V +
Sbjct: 97 SKPMIYWECSNATL--TC------------------------------EVLEGTDVELKL 124
Query: 593 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
++ + L S +K + N +K A N + + V
Sbjct: 125 YQGKEHLRSLRQKTMSYQWTN------------LRAPFKCKAVNRVSQESEMEVVNC 169
Score = 35.3 bits (81), Expect = 0.035
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 14/87 (16%)
Query: 585 SPAPSIVWFRNNKPLLSSPKK----------REIFDGENIILELKEADSETDAGDYKVVA 634
P ++W + + R D + L + S D +Y++ +
Sbjct: 21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS-DEDEYEMES 79
Query: 635 TNELGSATHGARVTVDVEKVGRPPINS 661
N + + V +E V +P I
Sbjct: 80 PNITDTMKF--FLYV-LEMVSKPMIYW 103
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 60.1 bits (145), Expect = 5e-11
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 37/133 (27%)
Query: 227 QVNTGKPEKPSI-----LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR-- 279
++ + E P I + + G L V + G+P+P V W K
Sbjct: 5 HHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPA 64
Query: 280 ------------------------------QITSEKNTHTLTLIQCSTKDKGRYSVKVTN 309
++ + K+ T+ +D+G Y+V V N
Sbjct: 65 RPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Query: 310 KEGTVESAANLNV 322
G + + V
Sbjct: 125 PVGEDQVNLTVKV 137
Score = 59.0 bits (142), Expect = 1e-10
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 37/132 (28%)
Query: 106 VNTGKPEKPSI-----LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR--- 157
++ + E P I + + G L V + G+P+P V W K
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 65
Query: 158 -----------------------------QITSEKNTHTLTLIQCSTKDKGRYSVKVTNK 188
++ + K+ T+ +D+G Y+V V N
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNP 125
Query: 189 EGTVESAANLNV 200
G + + V
Sbjct: 126 VGEDQVNLTVKV 137
Score = 50.1 bits (119), Expect = 2e-07
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 30/125 (24%)
Query: 12 PPTF-----SKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQS- 65
PP + + +++ L+V + P P ++W + D
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 66 ------------------------DMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMD 101
+ SI T++ +K +EGVYTV KN GE +++
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 132
Query: 102 IPVKV 106
+ VKV
Sbjct: 133 LTVKV 137
Score = 50.1 bits (119), Expect = 2e-07
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 30/110 (27%)
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF------------------- 609
V +RL + PAP+++W + +P +
Sbjct: 29 VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 88
Query: 610 ----------DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 649
+ I ++ A+ E D G Y V N +G V V
Sbjct: 89 ETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 38.2 bits (88), Expect = 0.002
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 686 VEKPVETAPVIDPPP----PPEVLVKKGEDLKIEVRFKALPPPKAEWTVNGTVIVPSKRV 741
+ P I P ++V G L+++V P P W T +
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR 65
Query: 742 KGKAEFIKKLDDLEVKERENAVLEVE 767
D E + + E E
Sbjct: 66 PAPDAPEDTGDSDEWVFDKKLLCETE 91
Score = 35.9 bits (82), Expect = 0.013
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 331 KKLDDLEVKERENAVLEVEVTSDKA-DVKWFKDGQEIK---------------------- 367
+ D + V L+V ++ D A V W K +
Sbjct: 23 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 82
Query: 368 -------TSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLP----DQETSAELNVVE 413
T +V +E + DEG YT ++ + + + + V++
Sbjct: 83 DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 35.1 bits (80), Expect = 0.023
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQKLI 473
P + + ++ +W D K + V + +
Sbjct: 47 APTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFT 106
Query: 474 IFSAGLEDAGEYSCRVG-DTGDKESKATLTV 503
+ A ED G Y+ V G+ + T+ V
Sbjct: 107 VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 57.4 bits (138), Expect = 3e-10
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQI-----------T 160
P I S G + + W D + ++D ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 161 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVD 201
+ T L L +G Y ++N G+ S A L ++
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 57.4 bits (138), Expect = 3e-10
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQI-----------T 282
P I S G + + W D + ++D ++
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 283 SEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVD 323
+ T L L +G Y ++N G+ S A L ++
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 48.5 bits (115), Expect = 3e-07
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 559 PLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKREIFDGEN 613
P + E ++ + +S + W +N+ L + G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 614 I-----ILELKEADSETDAGDYKVVATNELGSAT-HGARVTVD 650
+ IL L+ T G Y+ V +N GS+ A +T++
Sbjct: 71 LMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 46.6 bits (110), Expect = 2e-06
Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDL--LWYYNGEPLQETDEVVFS----DQSD 66
P + + + A S+V+ + + + W + E LQ+ + ++ +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
+ Y +I+ +++++ EG Y V N G +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
Score = 38.1 bits (88), Expect = 0.002
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 16/110 (14%)
Query: 409 LNVVELP-PEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYKDGKEIAFSENVTL 463
+ P P+I+V + SF + W D + + +E
Sbjct: 3 FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAA-SSSDSPMTFAWXXDNEALQDAEMENY 61
Query: 464 SIDGKKQK--------LIIFSAGLEDAGEYSCRVGDT-GDKESK-ATLTV 503
+ + L + + G Y C + + G S A LT+
Sbjct: 62 AHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 34.7 bits (79), Expect = 0.025
Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 16/100 (16%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRK-- 382
+ + + + S W D + ++ ++
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 383 ------LLIRNISVHDEGEYTCSL-----PDQETSAELNV 411
L +RN+ EG Y C + A L +
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 58.8 bits (142), Expect = 5e-10
Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 32/176 (18%)
Query: 245 VSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI------------------KDRQITSEK 285
V+ GES L ++ GE + W + + K + +
Sbjct: 8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67
Query: 286 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL-NVDQGKAEFIKKLDDLEVKERENA 344
+++L L +D G Y +++ K S+ L + Q + + L
Sbjct: 68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127
Query: 345 VLEVEVTSDKADV--KWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
L V +V +W G + + +T+ + + E +YTC
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTV----------SWDPRISSEQDYTC 173
Score = 53.5 bits (128), Expect = 3e-08
Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 46/178 (25%)
Query: 342 ENAVLEVEVTSDKA--DVKWFKDGQEIKT------------------SKKVTIEKKGTIR 381
E+ L +E + + + W + + K++ + +
Sbjct: 14 ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS-- 71
Query: 382 KLLIRNISVHDEGEYTCSL----PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEI 437
L + N+ + D G Y + + +S L ++ I V E+
Sbjct: 72 -LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC---EL 127
Query: 438 ELT------KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
LT + +W G ++ N+T+S D + + +Y+C
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR----------ISSEQDYTCIA 175
Score = 47.7 bits (113), Expect = 3e-06
Identities = 25/208 (12%), Positives = 52/208 (25%), Gaps = 59/208 (28%)
Query: 123 VSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI------------------KDRQITSEK 163
V+ GES L ++ GE + W + + K + +
Sbjct: 8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67
Query: 164 NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL 223
+++L L +D G Y +++ K S+ L +
Sbjct: 68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ-------------------- 107
Query: 224 DTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQIT 282
+ + L+ V + + W G +
Sbjct: 108 ---------LRNIQVT-NHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTL------ 151
Query: 283 SEKNTHTLTLI-QCSTKDKGRYSVKVTN 309
+ LT+ + Y+ N
Sbjct: 152 --SSQPNLTVSWDPRISSEQDYTCIAEN 177
Score = 44.2 bits (104), Expect = 4e-05
Identities = 20/186 (10%), Positives = 46/186 (24%), Gaps = 24/186 (12%)
Query: 16 SKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPLQE------TDEVVFSDQSDMH 68
S V VTL + A + + + W +N L +
Sbjct: 2 SLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQG 61
Query: 69 SYVSIV-----TIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDV 123
++ + ++K + G Y + ++ + + +
Sbjct: 62 KRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR-ILRQLRNIQVT-NHSQL 119
Query: 124 SITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI-QCSTKDKGRY 181
L+ V + + W G + + LT+ + Y
Sbjct: 120 FQNMTCELHLTCSVEDADDNVSFRWEALGNTL--------SSQPNLTVSWDPRISSEQDY 171
Query: 182 SVKVTN 187
+ N
Sbjct: 172 TCIAEN 177
Score = 41.5 bits (97), Expect = 3e-04
Identities = 34/245 (13%), Positives = 64/245 (26%), Gaps = 80/245 (32%)
Query: 418 ISVPLQDVKVSRDEKASFEIELTKGDAL--VKWYKDGKEIAF-----SENVTLSIDGKKQ 470
+S+ V E + +E G+ + + W + +AF +++ + + KQ
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 471 K----------LIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAPAVEFLTKLPSVTL 519
L + + +ED G Y ++ T K S TL
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR----------------- 103
Query: 520 VPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLM 579
+L + + + L
Sbjct: 104 --------ILRQLRNIQVTNHSQL-------------------------FQNMTCELHLT 130
Query: 580 AKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 638
V+ A S W L S P L + + DY +A N +
Sbjct: 131 CSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAV 179
Query: 639 GSATH 643
+ +
Sbjct: 180 SNLSF 184
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 56.7 bits (136), Expect = 6e-10
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKN---------- 164
L P H + ++ GE VL+ E + ++ W + +++ +
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 165 -THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
TLT+ + D+G Y+ ++ T +++ + V
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 56.7 bits (136), Expect = 6e-10
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 239 LEPLHDVSITEGESAVLSVQVGGEPSPKVE--WYKDGKLIKDRQITSEKN---------- 286
L P H + ++ GE VL+ E + ++ W + +++ +
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 287 -THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
TLT+ + D+G Y+ ++ T +++ + V
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 47.8 bits (113), Expect = 8e-07
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 11 IPPTFSKKTKPVYAEENSEVTLEVRLVAVPEP--DLLWYYNGEPLQETDEVVFSDQSDMH 68
I + + ++ L D W Y Q V ++
Sbjct: 7 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 69 SYV----SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI 116
S + S +TI + + ++G+YT A + K V+V+ EKP +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH----EKPFV 114
Score = 45.5 bits (107), Expect = 5e-06
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 334 DDLEVKERENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRK-------- 382
+E+ E VL ++ D W + + K V + K
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISV 420
L I ++ D+G YTC L ++ S + V E P ++
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE-KPFVAF 116
Score = 37.0 bits (85), Expect = 0.004
Identities = 11/91 (12%), Positives = 24/91 (26%), Gaps = 11/91 (12%)
Query: 569 TVKEKGTIRLMAKVKASPAPSI--VWFRNNKPLLSSPKKREIFDGENI--------ILEL 618
+ + L + I W + ++ L +
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78
Query: 619 KEADSETDAGDYKVVATNELGSATHGARVTV 649
+ +D G Y A++ L + + V V
Sbjct: 79 DGV-TRSDQGLYTCAASSGLMTKKNSTFVRV 108
Score = 33.9 bits (77), Expect = 0.051
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 28/109 (25%)
Query: 422 LQDVKVSRDEKASFEIELTKGDALV---------------KWYKDGKEIAFSENVTLSID 466
+ DV +S S IEL+ G+ LV W + + V +
Sbjct: 7 IYDVVLS----PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62
Query: 467 GKKQK--------LIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEAP 506
+ L I D G Y+C K++ + V
Sbjct: 63 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 29.7 bits (66), Expect = 1.7
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 688 KPVETAPVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWT 729
P + P + + GE L + + ++
Sbjct: 2 DPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 43
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 57.6 bits (139), Expect = 9e-10
Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 65/210 (30%)
Query: 118 EPLHDVSITEGESAVLSVQV------------GGEPSPKVEWYKDGKLI------KDRQI 159
+ + +V+ G + L++ +E++ +GK KDR +
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR-V 62
Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYV 219
+K L + S +D+G Y +++ ++ + V YE
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEV--YEM-------------- 105
Query: 220 VSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDR 279
KP I E +A L+ +V +++ Y+ + +
Sbjct: 106 -------------VSKPMI--------YWECSNATLTCEVLEGTDVELKLYQGKEHL--- 141
Query: 280 QITSEKNTHTLTLIQCSTKDKGRYSVKVTN 309
++ T+ T + + K N
Sbjct: 142 -----RSLRQKTMSYQWTNLRAPFKCKAVN 166
Score = 53.0 bits (127), Expect = 4e-08
Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 240 EPLHDVSITEGESAVLSVQV------------GGEPSPKVEWYKDGKLI------KDRQI 281
+ + +V+ G + L++ +E++ +GK KDR +
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR-V 62
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVK-E 340
+K L + S +D+G Y +++ ++ + V + + + E
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEV-------YEMVSKPMIYWE 114
Query: 341 RENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
NA L EV ++K ++ + +++ ++ T+ + T + + C
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKC 162
Score = 52.6 bits (126), Expect = 5e-08
Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 34/182 (18%)
Query: 19 TKPVYAEENSEVTLEVRLVAVPEPD------------LLWYYNGEPLQETDEVVFSDQSD 66
V A S VTL + + L ++ NG+ F D+ D
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESV--FKDRVD 63
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
+ + I ++ K + G Y + + E E + I ++V E + I
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEV----------YEMVSKPMIY 112
Query: 127 -EGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
E +A L+ +V +++ Y+ + + ++ T+ T + + K
Sbjct: 113 WECSNATLTCEVLEGTDVELKLYQGKEHL--------RSLRQKTMSYQWTNLRAPFKCKA 164
Query: 186 TN 187
N
Sbjct: 165 VN 166
Score = 51.8 bits (124), Expect = 1e-07
Identities = 22/176 (12%), Positives = 44/176 (25%), Gaps = 46/176 (26%)
Query: 338 VKERENAVLEVEVTSDK--ADVKWFKDGQEIKTSKKVTIEKKGTIRK------------- 382
N L + + W K + G
Sbjct: 11 AITGSNVTLTILKHPLASYQRLTWLHT----TNQKILEYFPNGKKTVFESVFKDRVDLDK 66
Query: 383 ----LLIRNISVHDEGEYTCSL---PDQETSAELNVVELP--PEISVPLQDVKVSRDEKA 433
L I N+S D G+Y + + + + V E+ P I + ++ +
Sbjct: 67 TNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLE 126
Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV 489
++EL Y+ + + T+S + C+
Sbjct: 127 GTDVELK-------LYQGKEHLRSLRQKTMSY-----------QWTNLRAPFKCKA 164
Score = 48.7 bits (116), Expect = 1e-06
Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 77/245 (31%)
Query: 413 ELPPEISVPL-QDVKVSRDEKASFEIEL-----TKGDALVKWYKDGKEIAFSENVT--LS 464
+ P ++ +V ++ + + T +++++ +GK+ F +
Sbjct: 4 QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63
Query: 465 IDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
+D L I++ ED G+Y R+ + + K T+ V
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEM------------------ 105
Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
+S P I + N + TC +V
Sbjct: 106 -------VSKPMIYWECSNATL--TC------------------------------EVLE 126
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
+ ++ + L S + + +K A N + +
Sbjct: 127 GTDVELKLYQGKEHLRS---------LRQKTMSYQ---WTNLRAPFKCKAVNRVSQESEM 174
Query: 645 ARVTV 649
V
Sbjct: 175 EVVNC 179
Score = 37.2 bits (86), Expect = 0.007
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 19 TKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKS 78
+KP+ E S TL ++ + +L Y E L+ T+
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL---------------RQKTMSY 151
Query: 79 IKKREEGVYTVVAKNR 94
+ A NR
Sbjct: 152 QWTNLRAPFKCKAVNR 167
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 58.5 bits (141), Expect = 9e-10
Identities = 36/260 (13%), Positives = 63/260 (24%), Gaps = 77/260 (29%)
Query: 414 LPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEI------AFSENVTLSIDG 467
P E + L + V D + + G+E ++ + L D
Sbjct: 25 FPVEKQLDLAALIVYW----------EMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ 74
Query: 468 KKQ---KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLG 524
L I L+DAG Y C + G + T+ V AP
Sbjct: 75 LSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAP------------------ 116
Query: 525 DATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA 584
I + L + +
Sbjct: 117 ----------------------------------YNKINQRILVVDPVTSEHELTCQAEG 142
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDYKVVATNELGS 640
P ++W ++ +LS E N+ L+ + T +
Sbjct: 143 YPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR--INTTTNEIFYCTFRRLDPE 200
Query: 641 ATHGARVTVDVEKVGRPPIN 660
H A + + + PP
Sbjct: 201 ENHTAELVIPELPLAHPPNE 220
Score = 56.5 bits (136), Expect = 5e-09
Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 38/224 (16%)
Query: 19 TKPVYAEENSEVTLEVRLVAVPEPDL--------------LWYYNGEPLQETDEVVFS-- 62
E S +T+E + + DL + + +GE + +
Sbjct: 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQR 67
Query: 63 ---DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
+ + + + I +K ++ GVY + + G I VKVN +
Sbjct: 68 ARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKIN----Q 122
Query: 120 LHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLIKDRQITSEKNT-----HTLTLIQC 173
V L+ Q G P +V W D +++ + T+ + + ++
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182
Query: 174 STKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
+T + + A L + E P + PP
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVI--------PELPLAHPP 218
Score = 51.5 bits (123), Expect = 2e-07
Identities = 27/240 (11%), Positives = 59/240 (24%), Gaps = 65/240 (27%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSP-----KVEW---------YKDGKLIKDRQIT 160
++ P + G + + + E V W + G+ Q +
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 161 SEKN------------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKES 208
S + L + +D G Y ++ G + V+ K +
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKIN 121
Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVE 268
V L+ Q G P +V
Sbjct: 122 --------------------------------QRILVVDPVTSEHELTCQAEGYPKAEVI 149
Query: 269 WYK-DGKLIKDRQITSEKNT-----HTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
W D +++ + T+ + + ++ +T + + A L +
Sbjct: 150 WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 43.8 bits (103), Expect = 7e-05
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 17/136 (12%)
Query: 383 LLIRNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIEL 439
L I ++ + D G Y C + V P V E EL
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNA-PYNKINQRILVVDPVTS----EHEL 136
Query: 440 T---KG--DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA---GLEDAGEYSCRVG- 490
T +G A V W ++ + T + +++ + S + C
Sbjct: 137 TCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR 196
Query: 491 DTGDKESKATLTVEAP 506
++ A L +
Sbjct: 197 LDPEENHTAELVIPEL 212
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 59.8 bits (145), Expect = 2e-09
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLI----KDRQITSEKNTH 166
P I+EP D+++TEG +A L + V W +G ++ +I +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
TL + +D G Y+ V+N G ++A LNV
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437
Score = 55.9 bits (135), Expect = 3e-08
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK-DGKLI----KDRQITSEKNTH 288
P I+EP D+++TEG +A L + V W +G ++ +I +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG- 397
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
TL + +D G Y+ V+N G ++A LNV
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
Score = 54.0 bits (130), Expect = 1e-07
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTIRKLLIRNISV 390
DL V E A L+ ++ V W + T ++ + GT L N++V
Sbjct: 350 DLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---LNFTNVTV 406
Query: 391 HDEGEYTC----SLPDQETSAELNVVELPP 416
D G YTC S+ + SA LNV
Sbjct: 407 QDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 54.0 bits (130), Expect = 1e-07
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE- 607
TC AP+ +E + V E L + ++ S+ W N +++ +
Sbjct: 338 TCY------APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVR 390
Query: 608 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 650
I + L + D G Y + +N +G+ T A + V
Sbjct: 391 IAVLSDGTLNFTNV-TVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 43.2 bits (102), Expect = 3e-04
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 14/134 (10%)
Query: 381 RKLLIRNISVHDEGEYTCSLPDQ---ETSAELNVVEL---PPEISVPLQDVKVSRDEKAS 434
+ + C+ P EL+ P I P D+ V+ A
Sbjct: 301 SWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAE 360
Query: 435 FEIELTKGDALVKWYKDGKEI----AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
+ + V W + A+ + + DG L + ++D G Y+C V
Sbjct: 361 LKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVS 417
Query: 491 DT-GDKESKATLTV 503
++ G+ + ATL V
Sbjct: 418 NSVGNTTASATLNV 431
Score = 39.3 bits (92), Expect = 0.004
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 15/108 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDE----VVFSDQSD 66
P + + E L+ R + + W NG + V SD
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSD--- 396
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP 114
+ ++ ++ G+YT + N G + V G
Sbjct: 397 -----GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT-GTHHHH 438
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 59.4 bits (144), Expect = 3e-09
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 549 TCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS----SPK 604
C AP ++ + + E L K + P S+ W N +LS P+
Sbjct: 349 QCS------APFIMDAPRDLNISEGRMAEL--KCRTPPMSSVKWLLPNGTVLSHASRHPR 400
Query: 605 KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 651
+ DG L +D G Y + TN G++ A + V
Sbjct: 401 ISVLNDG---TLNFSHV-LLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 57.8 bits (140), Expect = 8e-09
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLI----KDRQITSEKNTH 166
P I++ D++I+EG A L + P V+W G ++ + +I+ +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG- 407
Query: 167 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPY 218
TL D G Y+ VTN G ++A LNV +
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA-------GTHHHHHH 452
Score = 52.8 bits (127), Expect = 3e-07
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLI----KDRQITSEKNTH 288
P I++ D++I+EG A L + P V+W G ++ + +I+ +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG- 407
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
TL D G Y+ VTN G ++A LNV
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442
Score = 50.1 bits (120), Expect = 2e-06
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 335 DLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSK----KVTIEKKGTIRKLLIRNISV 390
DL + E A L+ + VKW + + ++++ GT L ++ +
Sbjct: 361 DLNISEGRMAELKCRTPP-MSSVKWLLPNGTVLSHASRHPRISVLNDGT---LNFSHVLL 416
Query: 391 HDEGEYTC----SLPDQETSAELNVVELPP 416
D G YTC + SA LNV
Sbjct: 417 SDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 43.2 bits (102), Expect = 3e-04
Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 15/134 (11%)
Query: 381 RKLLIRNISVHDEGEYTCSLPDQ---ETSAELNVVEL---PPEISVPLQDVKVSRDEKAS 434
L I + C P E++ P I +D+ +S A
Sbjct: 312 AWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAE 371
Query: 435 FEIELTKGDALVKWYKDGKEIA----FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG 490
+ + VKW + +++ DG L L D G Y+C V
Sbjct: 372 LKCRTPP-MSSVKWLLPNGTVLSHASRHPRISVLNDGT---LNFSHVLLSDTGVYTCMVT 427
Query: 491 DT-GDKESKATLTV 503
+ G+ + A L V
Sbjct: 428 NVAGNSNASAYLNV 441
Score = 43.2 bits (102), Expect = 3e-04
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 9/106 (8%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQSDMHSY 70
P + + E L+ R P + W NG L S +
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHA-----SRHPRISVL 404
Query: 71 VS-IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
+ + + GVYT + N G + + V+T
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 58.6 bits (142), Expect = 5e-09
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 557 QAPLFIERFEEK-TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 615
+ +R ++ V E T++ + + P P+I+W K L+S+ + +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 616 LELKEADSETDAGDYKVVATNELGSATHGARVTV 649
LE++ A D G Y +A N G+ + A + V
Sbjct: 443 LEVRYA-QVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 51.3 bits (123), Expect = 9e-07
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 101 DIPVKVNTGK--PEKPSILE-PLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKD 156
D P + + I + V + EG + + G+P P + W L+
Sbjct: 370 DFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA 429
Query: 157 RQ---ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ +T + TL + +D G Y N G A+L+V
Sbjct: 430 KSNGRLTVFPDG-TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 50.9 bits (122), Expect = 1e-06
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 233 PEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD-GKLIKDRQ---ITSEKNTH 288
V + EG + + G+P P + W L+ + +T +
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG- 441
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
TL + +D G Y N G A+L+V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 47.0 bits (112), Expect = 2e-05
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 335 DLEVKERENAVLEVEVTSD-KADVKWFKDGQEI---KTSKKVTIEKKGTIRKLLIRNISV 390
+ V E D + W + + K++ ++T+ GT L +R V
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT---LEVRYAQV 450
Query: 391 HDEGEYTC 398
D G Y C
Sbjct: 451 QDNGTYLC 458
Score = 44.3 bits (105), Expect = 1e-04
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
+K + V+ +E V R P P +LW + + S +S+ V
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSP-------RKHLVSAKSNGRLTV 437
Query: 72 S---IVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNT 108
+ ++ + ++ G Y +A N G M + V +
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 40.1 bits (94), Expect = 0.002
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 11/118 (9%)
Query: 394 GEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKD 451
G+ PD Q V V F GD + W
Sbjct: 365 GKEFKDFPDVLLPNYFTCRR-ARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSP 422
Query: 452 GKEIAFSE---NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDT-GDKESKATLTVEA 505
K + ++ +T+ DG L + A ++D G Y C + G+ A L V +
Sbjct: 423 RKHLVSAKSNGRLTVFPDGT---LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 32.4 bits (74), Expect = 0.59
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 693 APVIDPPPPPEVLVKKGEDLKIEVRFKALPPPKAEWTV-NGTVI 735
I +V V +G ++ R PPP W ++
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV 427
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 57.2 bits (137), Expect = 6e-09
Identities = 36/285 (12%), Positives = 79/285 (27%), Gaps = 31/285 (10%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
V + G S +++ + + ++ + + ++ +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIETP----LPKKELLLPGNNRKVYELSNVQEDSQP 63
Query: 304 SVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTS----DKADVKW 359
+G + L V +N L +V V
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVL 123
Query: 360 FKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC------------SLPDQETSA 407
+ +E+K V + T L+ R+ H ++C +
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRD---HHGANFSCRTELDLRPQGLELFENTSAPY 180
Query: 408 ELNVVELPPEISVPLQDVKVSRDEKASFEIELT----KGDALVKWYKDGKEIAFSENVTL 463
+L LP + + D + + L +A V + + + VT
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTY 238
Query: 464 SIDGKKQKLII-FSAGLEDAGEYSCRVG-DTGDKESKATLTVEAP 506
D K + +A E +C V +E+ T+T+ +
Sbjct: 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 283
Score = 56.0 bits (134), Expect = 1e-08
Identities = 36/247 (14%), Positives = 69/247 (27%), Gaps = 32/247 (12%)
Query: 82 REEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGE 140
+E+ + +G++ + V PE+ + G++ L QV GG
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYW-TPERVELAPL--PSWQPVGKNLTLRCQVEGGA 114
Query: 141 PSPK--VEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANL 198
P V + K +K E T T++ +S +
Sbjct: 115 PRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFE 174
Query: 199 NVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ 258
N ++ P +PP V P +LE +
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVS---------------PRVLE--------VDTQGTVVCS 211
Query: 259 VGGE-PSPKVEWY-KDGKLIKDRQITSEKNTHTLTLIQCSTK-DKGRYSVKVTNKEGTVE 315
+ G P + + + G + +T ++ + T D+G + G
Sbjct: 212 LDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS 271
Query: 316 SAANLNV 322
V
Sbjct: 272 QETLQTV 278
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 56.8 bits (137), Expect = 1e-08
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 9/107 (8%)
Query: 119 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCST 175
G++ + + KV + + S +N L +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 176 KDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKET-----PPSPPP 217
+D G Y+ + + L V + +T P P
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHP 357
Score = 50.6 bits (121), Expect = 1e-06
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
T+ + K + +N+ +LS + N L K+
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSV-RNGDLFFKKV-QVE 311
Query: 626 DAGDYKVVATNELGSATHGARVTV 649
D G Y A E + T + V
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKV 335
Score = 49.5 bits (118), Expect = 2e-06
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---KDRQITSEKNTHTLTLIQCST 297
G++ + + KV + + S +N L +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-DLFFKKVQV 310
Query: 298 KDKGRYSVKVTNKEGTVESAANLNV 322
+D G Y+ + + L V
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKV 335
Score = 48.7 bits (116), Expect = 5e-06
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 5/92 (5%)
Query: 24 AEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKRE 83
A +T+ + + E + + + K ++ +
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQ-----GSNGSVSVRNGDLFFKKVQVED 312
Query: 84 EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPS 115
GVYT A + + +KV
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTLHGHH 344
Score = 42.9 bits (101), Expect = 3e-04
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 332 KLDDLEVKERENAVLEVEVTSD-KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIRNI 388
K E + + + V +++ + S + G L + +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD---LFFKKV 308
Query: 389 SVHDEGEYTC----SLPDQETSAELNVVELPPE 417
V D G YTC ++ S EL V
Sbjct: 309 QVEDGGVYTCYAMGETFNETLSVELKVYNFTLH 341
Score = 35.2 bits (81), Expect = 0.077
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTV 503
W E S+ S+ + L +ED G Y+C G+T ++ L V
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 56.1 bits (135), Expect = 2e-08
Identities = 34/294 (11%), Positives = 86/294 (29%), Gaps = 53/294 (18%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
P YN + S+ + + ++I +I + G Y K R+G
Sbjct: 42 AGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYY-CVKFRKGSPD 100
Query: 100 MDIP----VKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLI 154
+ +++ ++ + + + G P ++W+K+G +
Sbjct: 101 TEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL 160
Query: 155 KDRQIT----SEKNTHT----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPK 206
D Q E +++ ++ + +V + L DP
Sbjct: 161 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHV--------TLQGDPLRGT 212
Query: 207 ESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSP 265
+ PP + + ++ QV P
Sbjct: 213 ANLSETIRVPPTLEVTQQ---------------------PVRAENQVNVTCQVRKFYPQR 251
Query: 266 -KVEWYKDGKLIKDRQITS---EKN-----THTLTLIQCSTKDKGRYSVKVTNK 310
++ W ++G + + ++ K+ L + + +D + + +V +
Sbjct: 252 LQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305
Score = 41.1 bits (96), Expect = 0.001
Identities = 42/312 (13%), Positives = 97/312 (31%), Gaps = 57/312 (18%)
Query: 245 VSITEGESAVLSVQV-GGEPSPKVEWYK----------------DGKLIKDRQITSE-KN 286
VS+ GESA+L V P ++W++ ++ + T
Sbjct: 13 VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72
Query: 287 THTLTL--IQ--------CSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDL 336
++++ I C KG + + GT S + A +
Sbjct: 73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRA----KPSAPVVSGPAAR 128
Query: 337 EVKERENAV--LEVEVTSDKADVKWFKDGQEIKTSKKVT--IEKKGTIR---KLLIRNIS 389
+ + + +KWFK+G E+ + + + + +
Sbjct: 129 ATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTR 188
Query: 390 VHDEGEYTCSL--------PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK 441
+ C + P + T+ + +PP + V Q V+ + + ++ K
Sbjct: 189 EDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAEN--QVNVTCQVRK 246
Query: 442 ---GDALVKWYKDGKEIAFSENVTLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVGDTG 493
+ W ++G T++ + L++ + D + +C+V G
Sbjct: 247 FYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDG 306
Query: 494 DKESKATLTVEA 505
+ ++
Sbjct: 307 QPAVSKSHDLKV 318
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 52.3 bits (125), Expect = 2e-08
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQI---TS 161
S+ +++ EG++ L + ++W K+ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
N ++T+ + +D+G Y + + V E P P
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPSHWRP 116
Score = 51.9 bits (124), Expect = 3e-08
Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 327 AEFIKKLDDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIR---- 381
+ + V+E + L+ + + ++W + + K +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 382 -----KLLIRNISVHDEGEYTC---SLPDQETSAELNVVELPPEISVP 421
+ + N+++ DEG Y C S ++ V+ +
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLA-TMKGEFC 108
Score = 48.1 bits (114), Expect = 7e-07
Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQI---TS 283
S+ +++ EG++ L + ++W K+ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 284 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
N ++T+ + +D+G Y + + V
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99
Score = 47.3 bits (112), Expect = 1e-06
Identities = 14/111 (12%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 416 PEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGKKQ---- 470
++ + + V + + + + + ++ ++W F + + K Q
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 471 -----KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPS 516
+ + + L+D G Y C + + V A + PS
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPS 112
Score = 38.1 bits (88), Expect = 0.002
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 620
E TV+E T+ L S+ W + + + + + + +L
Sbjct: 4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63
Query: 621 AD--------SETDAGDYK-VVATNELGSATHGARVTVDV---EKVGRPPINSIDIDRNH 668
+ D G YK + ++ + + +V V + R P + ++ +H
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLHYSDSVSTKE--VKVIVLATMKGEFCRYPSHWRPLEHHH 121
Query: 669 VHH 671
HH
Sbjct: 122 HHH 124
Score = 31.5 bits (71), Expect = 0.32
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYY-NGEPLQETDEVVFSDQ--SDMHS 69
+ + T+ + EE +TL+ L W +G + + V + +H
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 70 YVSIVT--IKSIKKREEGVYTVVAKN---REGEAKMDIPVKVNTGKPEKPSILEPL 120
+ ++ + ++ ++EGVY + + E K+ + + PS PL
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPL 117
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 51.7 bits (123), Expect = 3e-08
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 114 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKD------------GKLIKDRQ 158
L+ VS+ G+ AV+ +V G+ P ++W+K +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 159 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDP 202
S T L + + D+G Y ++V K+ N++V+
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 51.7 bits (123), Expect = 3e-08
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 236 PSILEPLHDVSITEGESAVLSVQVGGEP---SPKVEWYKD------------GKLIKDRQ 280
L+ VS+ G+ AV+ +V G+ P ++W+K +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 281 ITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
S T L + + D+G Y ++V K+ N++V+
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
Score = 44.0 bits (103), Expect = 1e-05
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 551 PLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---APSIVWFR-NNKPLLSSPKKR 606
G+ +F+++ + +V+ ++AKV P+I WF+ L S R
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 607 ----EIFDGENII----LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 653
E + + + L + + D G Y++ + + G + V+ +
Sbjct: 65 FSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
Score = 41.7 bits (97), Expect = 8e-05
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 14/116 (12%)
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDAL----VKWYK---------D 451
+S E V V + A ++ + +KW+K
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61
Query: 452 GKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV-GDTGDKESKATLTVEAP 506
G +F E+ + + +L I L D G Y V + VEAP
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 41.7 bits (97), Expect = 9e-05
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 316 SAANLNVDQGKAEFIKKLDDLEVKERENAVLEVEVTSD----KADVKWFK---------D 362
S+ + ++ F+KK D + V+ ++AV+ +V K +KWFK
Sbjct: 2 SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61
Query: 363 GQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ----ETSAELNVVE 413
G + +L I + + D G Y + + ++V
Sbjct: 62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 52.1 bits (124), Expect = 1e-07
Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 59/214 (27%)
Query: 122 DVSITEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQITSEK----------------- 163
V + G+S +L G +EW+ + ++ S +
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 164 ------NTHTLTLIQCSTKDKGRYS-VKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
+ L L + D+ Y V GT E+ A LNV
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV---------------- 112
Query: 217 PYVVSELDTLQVNTGKPEKPSILEPLHDVSI-TEGESAVLS-VQVGGEPSPKVEWYKDGK 274
KPE + +S+ + + + G P+PK+ WY++G+
Sbjct: 113 -------------FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ 159
Query: 275 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 308
++ + + T ++ ++ G S+ T
Sbjct: 160 RLEVPVEMNPEGYMTSRTVREAS---GLLSLTST 190
Score = 50.6 bits (120), Expect = 4e-07
Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 24/186 (12%)
Query: 21 PVYAEENSEVTLEVRLVAVPEPDLL-WYYNGEPLQETDEVVFSDQSDMHSYVSIV----- 74
V V L+ + +L W+ Q
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 75 -----------TIKSIKKREEGVYT-VVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHD 122
+ + +E Y VV G A+ + V KPE +
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF-AKPEATEVSPNKGT 127
Query: 123 VSI-TEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGR 180
+S+ + + + G P+PK+ WY++G+ ++ + + T ++ ++ G
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREAS---GL 184
Query: 181 YSVKVT 186
S+ T
Sbjct: 185 LSLTST 190
Score = 50.6 bits (120), Expect = 5e-07
Identities = 35/222 (15%), Positives = 68/222 (30%), Gaps = 52/222 (23%)
Query: 334 DDLEVKERENAVL--EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK--------- 382
+EV ++ +L T D ++WF + + + E +G+ +
Sbjct: 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67
Query: 383 -----------LLIRNISVHDEGEYTC-----SLPDQETSAELNVVELP--PEISVPLQD 424
L++ V DE +Y C + E +A LNV P E+S
Sbjct: 68 SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127
Query: 425 VKVSRDEKASFEIELTKG---DALVKWYKDGKEIAFSENVTLSIDGKKQK---------- 471
+ V D ++ + WY++G+ + + +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 472 ---LIIFSAGLEDAGEYSCRV------GDTGDKESKA-TLTV 503
L + + + C G G +S LT+
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229
Score = 44.4 bits (104), Expect = 6e-05
Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 43/199 (21%)
Query: 244 DVSITEGESAVLSVQVGGEPSPK-VEWYKDGKLIKDRQITSEK----------------- 285
V + G+S +L G +EW+ + ++ S +
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 286 ------NTHTLTLIQCSTKDKGRYS-VKVTNKEGTVESAANLNVDQ--GKAEFIKKLDDL 336
+ L L + D+ Y V GT E+ A LNV E L
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128
Query: 337 EVKERENAVLEVEVTSD---KADVKWFKDGQEIKTSKKVTIEKKGTIRK----------- 382
V E + + + + W+++GQ ++ ++ E T R
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT 188
Query: 383 --LLIRNISVHDEGEYTCS 399
L +R + + C+
Sbjct: 189 STLYLRLRKDDRDASFHCA 207
Score = 40.9 bits (95), Expect = 7e-04
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 29/154 (18%)
Query: 417 EISVPLQDVKVSRDEKASF--EIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK--- 471
+SVP V+V R + T +++W+ + A + + G + +
Sbjct: 3 RLSVP-PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTM 61
Query: 472 -----------------LIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAP--AVEF 510
L++ A + D +Y C V G G E+ A L V A A E
Sbjct: 62 HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV 121
Query: 511 LTKLPSVTLVPHLGDATF--QVELSSPDIQVKWL 542
+++++ +P ++ W
Sbjct: 122 SPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWY 155
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 53.1 bits (127), Expect = 1e-07
Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 40/294 (13%)
Query: 237 SILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQITSEKN-------- 286
IL+ D + L V G P ++ W +DG+++ T+
Sbjct: 11 KILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST 70
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA---NLNVDQGKAEFIKKLDDLEVKEREN 343
LTL Q Y+ +VT + T E + + +G + ++ + ++ R++
Sbjct: 71 QSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKS 130
Query: 344 AVLEVEVTS-----DKADVKWFKDGQEIKTSKKVTIEKK-----GTIRKLLIRNISVHDE 393
+ V + W + + EK+ L + +
Sbjct: 131 PTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEG 190
Query: 394 GEYTCSLPDQETSAELNVVELPPEISVPLQDVKV---SRDEKASFEIELT-------KGD 443
Y C + L +V + + L D
Sbjct: 191 ETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPED 250
Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQ-------KLIIFSAGLEDAGEYSCRVG 490
V+W + ++ + + T K +L + A E E+ CR
Sbjct: 251 ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAV 304
Score = 43.9 bits (103), Expect = 1e-04
Identities = 40/284 (14%), Positives = 81/284 (28%), Gaps = 50/284 (17%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQITSEKN-------- 164
IL+ D + L V G P ++ W +DG+++ T+
Sbjct: 11 KILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAST 70
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELD 224
LTL Q Y+ +VT + T E + D S
Sbjct: 71 QSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSR----------- 119
Query: 225 TLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSE 284
PS + S T + ++ + + ++ W + + E
Sbjct: 120 -----------PSPFDLFIRKSPTI--TCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKE 166
Query: 285 K--------NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAE----FIKK 332
+ T TL + + Y +VT+ + G +
Sbjct: 167 EKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFA 226
Query: 333 LDDLEVKERENAVLEVEVTS---DKADVKWFKDGQEIKTSKKVT 373
+ R+ L + + + V+W + ++ ++ T
Sbjct: 227 TPE-WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHST 269
Score = 36.2 bits (83), Expect = 0.039
Identities = 30/220 (13%), Positives = 57/220 (25%), Gaps = 40/220 (18%)
Query: 357 VKWFKDGQEIKTS--KKVTIEKKGTIR---KLLIRNISVHDEGEYTC-------SLPDQE 404
+ W +DGQ + T ++ +L + + YTC + D
Sbjct: 43 ITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST 102
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT-----KGDALVKWYKDGKEI--AF 457
+ + + + + KG + W + +
Sbjct: 103 KKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS 162
Query: 458 SENVTLSIDGK---KQKLIIFSAGLEDAGEYSCRVGDT------GDKESKATLTVEAPAV 508
+ +G L + + + Y CRV +K + AP V
Sbjct: 163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEV 222
Query: 509 EFL------TKLPSVTLVPHLGDATFQVELSSPDIQVKWL 542
TL + + DI V+WL
Sbjct: 223 YAFATPEWPGSRDKRTLACLIQN------FMPEDISVQWL 256
Score = 29.3 bits (65), Expect = 4.5
Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 5/120 (4%)
Query: 46 WY-YNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104
W +G+P+ + ++ + S + + + E Y + +
Sbjct: 151 WSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRST 210
Query: 105 KVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK---VEWYKDGKLIKDRQITS 161
+G P + + L+ + P+ V+W + + D + ++
Sbjct: 211 TKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN-FMPEDISVQWLHNEVQLPDARHST 269
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 53.5 bits (128), Expect = 2e-07
Identities = 30/186 (16%), Positives = 54/186 (29%), Gaps = 22/186 (11%)
Query: 39 VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVY-TVVAKNREGE 97
V ++W N + + + ++ S VT I + ++ + +
Sbjct: 37 VNANYIVWKTNHFTIPKEQYTI------INRTASSVTFTDIASLNIQLTCNILTFGQLEQ 90
Query: 98 AKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKL 153
I + PEKP L + EG+ G E ++
Sbjct: 91 NVYGITIIS-GLPPEKPKNLS----CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHK 145
Query: 154 IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPP 213
D + + T V+ N G V S +N DP + P
Sbjct: 146 FADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH-INFDPVY-----KVKP 199
Query: 214 SPPPYV 219
+PP +
Sbjct: 200 NPPHNL 205
Score = 49.6 bits (118), Expect = 3e-06
Identities = 22/206 (10%), Positives = 43/206 (20%), Gaps = 42/206 (20%)
Query: 122 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 174
+ + + + + W + I Q T T +
Sbjct: 12 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDI 71
Query: 175 TKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPE 234
+ + + ++ + + P PE
Sbjct: 72 ASLNIQLTCNILTFGQLEQNVYGITI--------ISGLP-------------------PE 104
Query: 235 KPSILEPLHDVSITEGESAVLSVQVGGEPSP----KVEWYKDGKLIKDRQITSEKNTHTL 290
KP L + EG+ G E ++ D + + T
Sbjct: 105 KPKNLS----CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCT 160
Query: 291 TLIQCSTKDKGRYSVKVTNKEGTVES 316
V+ N G V S
Sbjct: 161 VDYSTVYFVNIEVWVEAENALGKVTS 186
Score = 40.8 bits (95), Expect = 0.002
Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 7/89 (7%)
Query: 244 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 296
+ + + + + W + I Q T T +
Sbjct: 12 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDI 71
Query: 297 TKDKGRYSVKVTNKEGTVESAANLNVDQG 325
+ + + ++ + + G
Sbjct: 72 ASLNIQLTCNILTFGQLEQNVYGITIISG 100
Score = 33.8 bits (77), Expect = 0.25
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 585 SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 644
A IVW N+ + + I + + + S ++ +L +G
Sbjct: 37 VNANYIVWKTNHFTIPKE--QYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYG 94
Query: 645 ARVTVDV 651
+ +
Sbjct: 95 ITIISGL 101
Score = 28.8 bits (64), Expect = 8.3
Identities = 7/60 (11%), Positives = 14/60 (23%), Gaps = 10/60 (16%)
Query: 690 VETAPVIDPPPPPEVLVKKGEDLKIEVRFK-------ALPPPKAEWTVNGTVIVPSKRVK 742
++ I P +V+ + K + W N I +
Sbjct: 2 LDPCGYI---SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 50.8 bits (121), Expect = 3e-07
Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 60/230 (26%)
Query: 120 LHDVSITEGESAVLS----VQVGGEPSPKVEWYKDGKLI--------------KDRQITS 161
+ V+ E A LS V V ++ W K+ K++ K+R I
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 162 EKNTHTLTLIQCSTKDKGRYS-VKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVV 220
N ++ ++ D+G Y V + ++ + V
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV-------------------- 100
Query: 221 SELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDR 279
TL V PSI D I + GG P P + W ++G+ +
Sbjct: 101 ----TLSVKA-DFPTPSI----SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI 151
Query: 280 QITSEKN--------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 321
T ++ + L + + + V N N
Sbjct: 152 NTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNWN 198
Score = 46.1 bits (109), Expect = 1e-05
Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 43/188 (22%)
Query: 337 EVKERENAVLEVEVTSDKAD-----VKWFKDGQEIKTSKK------------VTIEKKGT 379
+ +E A L + + W K+ + + T +
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 380 IRKLLIRNISVHDEGEYTCSL---------PDQETSAELNVVELPPEISVPLQDVKVSRD 430
+ ++I + DEG Y C + + L+V P S+ ++ S
Sbjct: 65 LS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN- 122
Query: 431 EKASFEIELT---KG---DALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSA---GLED 481
+ G + + W ++G+E+ + N T+S D + + + S +
Sbjct: 123 -----IRRIICSTSGGFPEPHLSWLENGEELN-AINTTVSQDPETELYAVSSKLDFNMTT 176
Query: 482 AGEYSCRV 489
+ C +
Sbjct: 177 NHSFMCLI 184
Score = 42.7 bits (100), Expect = 1e-04
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 20/172 (11%)
Query: 40 PEPDLLWYYNGEPLQE---TDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREG 96
+ +L +G+ + +F ++ +SI I +++ +EG Y V E
Sbjct: 35 EKKMVLTMMSGDMNIWPEYKNRTIFDITNN----LSI-VILALRPSDEGTYECVVLKYEK 89
Query: 97 EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIK 155
+A + T + + D I + GG P P + W ++G+ +
Sbjct: 90 DAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELN 149
Query: 156 DRQITSEKN--------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLN 199
T ++ + L + + + V N N
Sbjct: 150 AINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQTFNWN 198
Score = 40.7 bits (95), Expect = 7e-04
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 424 DVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN---VTLSIDGKKQKLIIFSAGLE 480
VS +E A I K +V G + E I ++I +
Sbjct: 17 GHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS-IVILALRPS 75
Query: 481 DAGEYSCRV----GDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSS-- 534
D G Y C V D +E A +T+ +V+ PS++ ++ S+
Sbjct: 76 DEGTYECVVLKYEKDAFKREHLAEVTL---SVKADFPTPSISDFEIPTSNIRRIICSTSG 132
Query: 535 --PDIQVKWLN 543
P+ + WL
Sbjct: 133 GFPEPHLSWLE 143
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 52.9 bits (126), Expect = 4e-07
Identities = 27/205 (13%), Positives = 64/205 (31%), Gaps = 24/205 (11%)
Query: 30 VTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTV 89
+ + V++ P + +W +G+ + + + + ++ V
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGD------------PTRTWNRAELAISTFWPNFYQVIFEV 141
Query: 90 VAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYK 149
+ +G +D + P L +V + G+ A G +
Sbjct: 142 ITSGHQGYLAIDEVKVLGHPCTRTPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWL 200
Query: 150 DGKLIKD------RQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY 203
G ++D + +S + + ++ + +D G+Y + + G S V
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260
Query: 204 EPKESKETPPSPPPYVVSELDTLQV 228
P P +PP L +
Sbjct: 261 PP-----VPIAPPQLASVGATYLWI 280
Score = 49.8 bits (118), Expect = 3e-06
Identities = 26/224 (11%), Positives = 56/224 (25%), Gaps = 40/224 (17%)
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
S + + V+V P W G + I + +
Sbjct: 87 SNSPPGLLNVYVKVNNGPLGNPIWNISGD-------PTRTWNRAELAISTFWPNFYQVIF 139
Query: 184 KVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLH 243
+V A +D ++V + +
Sbjct: 140 EVITSGHQGYLA---------------------------IDEVKVLGHPCTRTPHFLRIQ 172
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKD------RQITSEKNTHTLTLIQCST 297
+V + G+ A G + G ++D + +S + + ++ +
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232
Query: 298 KDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDLEVKER 341
+D G+Y + + G S V + I V
Sbjct: 233 RDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT 276
Score = 42.8 bits (100), Expect = 4e-04
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 3/117 (2%)
Query: 546 IVPTCPLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-K 604
I LG P R + V + + +P K
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211
Query: 605 KREIFDGENIILELKEAD-SETDAGDYKVVATNELGSATHGARVTVDVEKVGRPPIN 660
+ ++ I + ++ DAG Y+ + E G V V++ P
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV-VKEPPVPIAP 267
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 50.9 bits (121), Expect = 4e-07
Identities = 27/219 (12%), Positives = 71/219 (32%), Gaps = 32/219 (14%)
Query: 19 TKPVYAEENSEVTLE--------VRLVAV------PEPDLLWYYNGEPLQETDEVVFSD- 63
+ P+ A + L + + + Y +G+ +++ +
Sbjct: 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGR 70
Query: 64 ----QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEP 119
+ + + + + I ++ + G Y ++ + K + +KV +
Sbjct: 71 TSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSD------L 124
Query: 120 LHDVSITEGESAVLSVQ-VGGEPSPKVEWYKD-GKLIKDRQITSEKNTHTLTLIQCS--- 174
DV + L + G P P+++W + G+ I + + L + S
Sbjct: 125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM 184
Query: 175 -TKDKGRYSVKVTNKEGTVESAANLNV-DPYEPKESKET 211
S + + +E A++++ DP+
Sbjct: 185 RGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSAQHHH 223
Score = 48.2 bits (114), Expect = 3e-06
Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)
Query: 342 ENAVLEVEVTSDKA----DVKWFK-----------DGQEIKTSKKVTIEKKGTIRK---- 382
E+A L + + ++KW DG+E++ + + +I +
Sbjct: 20 EDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGIT 79
Query: 383 -----LLIRNISVHDEGEYTCSLPDQETSAELNV-VELPPEISVPLQDVKVSRDEKASFE 436
L I N++ D G+Y C D + + V +++ S DVK +D E
Sbjct: 80 AGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLE 139
Query: 437 IELTKG--DALVKWYKDGKEI--AFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVG-D 491
T ++W + E V G SC +
Sbjct: 140 CRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSS 199
Query: 492 TGDKESKATLTVEAP 506
E A++++ P
Sbjct: 200 LLGLEKTASISIADP 214
Score = 46.6 bits (110), Expect = 1e-05
Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 37/211 (17%)
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK---VEW-----------YKDGKLIKDRQIT 282
S+L P + GE A L + S + ++W Y DGK ++DRQ
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65
Query: 283 SEKN------------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFI 330
+ L + + D G+Y + + ++ L + A
Sbjct: 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL---KVAALGS 122
Query: 331 KKLDDLEVKERENAVLEVEVTSD--KADVKWFKDGQEI--KTSKKVTIEKKGTIRKLLIR 386
D++ + LE T + ++W + E V + G
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASV 182
Query: 387 NISVHDEGEYTC----SLPDQETSAELNVVE 413
+ +C SL E +A +++ +
Sbjct: 183 IMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213
Score = 43.2 bits (101), Expect = 1e-04
Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 66/240 (27%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK---VEW-----------YKDGKLIKDRQIT 160
S+L P + GE A L + S + ++W Y DGK ++DRQ
Sbjct: 6 SVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSA 65
Query: 161 SEKN------------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKES 208
+ L + + D G+Y + + ++ L V
Sbjct: 66 PYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSD-- 123
Query: 209 KETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ-VGGEPSPKV 267
DV + L + G P P++
Sbjct: 124 --------------------------------LHVDVKGYKDGGIHLECRSTGWYPQPQI 151
Query: 268 EWYKD-GKLIKDRQITSEKNTHTLTLIQCS----TKDKGRYSVKVTNKEGTVESAANLNV 322
+W + G+ I + + L + S S + + +E A++++
Sbjct: 152 QWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI 211
Score = 33.1 bits (75), Expect = 0.23
Identities = 38/266 (14%), Positives = 67/266 (25%), Gaps = 78/266 (29%)
Query: 406 SAELNVVELPPEISVPL-QDV----KVSRDEKAS-FEIELTKGDA--LVKWYKDGKEI-- 455
+ +V+ I + +D + A E++ +V Y DGKE+
Sbjct: 2 DLQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVED 61
Query: 456 ----AFSENVTLSIDGKKQK---LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAV 508
+ ++ DG L I + D+G+Y C D E A
Sbjct: 62 RQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL- 120
Query: 509 EFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERFEEK 568
S V G + L C S G
Sbjct: 121 ------GSDLHVDVKGYKDGGIHL----------------EC--RSTG------------ 144
Query: 569 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-----NIILELKEADS 623
P P I W N + + + + DG + ++
Sbjct: 145 ---------------WYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMR---- 185
Query: 624 ETDAGDYKVVATNELGSATHGARVTV 649
+ + L A +++
Sbjct: 186 GSSGEGVSCTIRSSLLGLEKTASISI 211
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 51.4 bits (122), Expect = 6e-07
Identities = 22/106 (20%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 113 KPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
P+ ++ G+S L+ V E + V W L L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 172 QCSTKDKGRYSVKVTNKEGTVESAANLNVD--PYEPKESKETPPSP 215
D G YS + G +L VD P EP+ S
Sbjct: 66 SVQLHDSGNYSC---YRAGRPAGTVHLLVDVPPEEPQLSCFRKSPL 108
Score = 51.4 bits (122), Expect = 6e-07
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 235 KPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
P+ ++ G+S L+ V E + V W L L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 294 QCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
D G YS + G +L VD
Sbjct: 66 SVQLHDSGNYSC---YRAGRPAGTVHLLVD 92
Score = 44.5 bits (104), Expect = 9e-05
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 415 PPEISVPLQDVKVSRDEKASFEIELTKGD--ALVKWYKDGKEIAFSENVTLSIDGKKQKL 472
P V + + + + + A V W + + + L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---L 62
Query: 473 IIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
++ S L D+G YSC G L V+ P
Sbjct: 63 LLRSVQLHDSGNYSCYRA--GRPAGTVHLLVDVP 94
Score = 44.1 bits (103), Expect = 1e-04
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 334 DDLEVKERENAVLEVEVTS--DKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVH 391
L ++ L D A V W + G R+LL+R++ +H
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP---SRWAGMGRRLLLRSVQLH 70
Query: 392 DEGEYTCSLPDQ-ETSAELNVVELPPEISV 420
D G Y+C + + L V P E +
Sbjct: 71 DSGNYSCYRAGRPAGTVHLLVDVPPEEPQL 100
Score = 37.9 bits (87), Expect = 0.009
Identities = 22/221 (9%), Positives = 47/221 (21%), Gaps = 36/221 (16%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLV-AVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSY 70
P + + VTL V + W
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---- 61
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGES 130
+ ++S++ + G Y+ R V + P E +
Sbjct: 62 ---LLLRSVQLHDSGNYSCYRAGRPAGT-----VHLLVDVPP-----EEPQLSCFRKSPL 108
Query: 131 AVLSVQV-----GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT-----LIQCSTKDKGR 180
+ + + + V + + + + D
Sbjct: 109 SNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSF 168
Query: 181 YSVKVT--NKEGTVESAANLNVDPYEPKESKETPPSPPPYV 219
Y V + + G+ S + P PP +
Sbjct: 169 YIVSMCVASSVGSKFS------KTQTFQGCGILQPDPPANI 203
Score = 34.5 bits (78), Expect = 0.12
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLM-AKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 612
+P + P T ++ L V+ ++ W S P +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61
Query: 613 NIILELKEADSETDAGDYKVVATNELGSATH 643
++ + D+G+Y H
Sbjct: 62 LLLRSV----QLHDSGNYSCYRAGRPAGTVH 88
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 48.3 bits (114), Expect = 2e-06
Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 35/211 (16%)
Query: 20 KPVYAEENSEVTL-------EVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQ-------- 64
K V +E V + + P + W+ +GE + V ++
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 65 -------SDMHSYVSIVTIKSIKKREEGVYTVVAKNREGE--AKMDIPVKVNTGKPEKPS 115
D+ ++I + + G Y + + + + +
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 116 ILEPLHDVSITEGESAVLSVQV----GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
+ L + G LS + P W + D + T + LTL
Sbjct: 128 DIHFLEPL--ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR---SSELTLT 182
Query: 172 QCSTKDKGRYSVKVTNKEG--TVESAANLNV 200
+ ++ + T E LNV
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 42.9 bits (100), Expect = 1e-04
Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 30/218 (13%)
Query: 122 DVSITEGESAVLS-------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCS 174
V++ EG ++ P V W++DG++ ++ + N +
Sbjct: 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR----RVK 64
Query: 175 TKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE----TPPSPPPYVVSELDTLQVNT 230
+ +GR+ + ++ +L++ +++ + + L +
Sbjct: 65 PETQGRFRLLGDVQKKN----CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEV 120
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQV----GGEPSPKVEWYKDGKLIKDRQITSEKN 286
+ + L + G LS + P W + D + T
Sbjct: 121 TALIEKPDIHFLEPL--ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--- 175
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNV 322
+ LTL + ++ + T E LNV
Sbjct: 176 SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 38.7 bits (89), Expect = 0.004
Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 40/189 (21%)
Query: 349 EVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK-------------------LLIRNIS 389
+S V WF+DG+ ++ V K L I +
Sbjct: 31 WYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR 90
Query: 390 VHDEGEYTCSL---PDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT------ 440
+ D G Y + D + S + N + L + D+ ++ L+
Sbjct: 91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGS 150
Query: 441 ---KGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRV---GDTGD 494
W + E S L + + +C++ G
Sbjct: 151 CEAGPPLTFSWTGNALSPLDPETTRSSE------LTLTPRPEDHGTNLTCQMKRQGAQVT 204
Query: 495 KESKATLTV 503
E L V
Sbjct: 205 TERTVQLNV 213
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 45.6 bits (108), Expect = 3e-06
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 410 NVVELPPEISVPLQDVKVSRDEKASFEIELT-KGDALVKWYKDGKEIAFSENVTLSIDGK 468
+ V+ Q+V V A + + ++W ++ + ++ D +
Sbjct: 1 SKVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60
Query: 469 KQ---------KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
+ + + L D G+Y+C + K SKA LTV
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGV 107
Score = 44.9 bits (106), Expect = 6e-06
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 334 DDLEVKERENAVLEVEVT-SDKADVKWFKDGQEIKTSKKVTIEKKGTIR---------KL 383
++ V E A+L V +D ++W Q+ + I +
Sbjct: 14 QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI 73
Query: 384 LIRNISVHDEGEYTCSL---PDQETSAELNVVELP 415
+ ++S+ DEG+YTCSL P + + A L V+ +P
Sbjct: 74 SVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108
Score = 42.2 bits (99), Expect = 5e-05
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 122 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQIT---SEKNTHTLT 169
+V++ EG +A+L+ +V + ++W + +D +I + + +++
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 200
+ S D+G+Y+ + S A L V
Sbjct: 75 VSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 42.2 bits (99), Expect = 5e-05
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 244 DVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI---------KDRQIT---SEKNTHTLT 291
+V++ EG +A+L+ +V + ++W + +D +I + + +++
Sbjct: 15 NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ S D+G+Y+ + S A L V
Sbjct: 75 VSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
Score = 32.9 bits (75), Expect = 0.079
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 553 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-- 610
GS GQ PL + TV E GT L +V + S+ W + L K+ + D
Sbjct: 5 GSQGQFPLT----QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNR 60
Query: 611 -------GENIILELKEADSETDAGDYK-VVATNELGSATHGARVTVDVEKVGRPP 658
+ + + + +D G Y + T + ++ A +TV P
Sbjct: 61 IELVRASWHELSISVSDVS-LSDEGQYTCSLFTMPVKTSK--AYLTVLG-----VP 108
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 46.8 bits (111), Expect = 6e-06
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 10/139 (7%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ-ETSA-----ELNVV 412
K+G + +E + I +++ H G Y C S EL V
Sbjct: 37 LVKEGSPEPWDTQNPLEP-KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVT 95
Query: 413 ELPPEISVPLQ-DVKVSRDEKASFEIELTKGDALVKWYKDGKEIA-FSENVTLSIDGKKQ 470
+ ++ V+ E + + ++G ++ + L+ G+ Q
Sbjct: 96 GFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ 155
Query: 471 -KLIIFSAGLEDAGEYSCR 488
+ C
Sbjct: 156 ALFPVGPVTPSHRWMLRCY 174
Score = 34.1 bits (78), Expect = 0.096
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 440 TKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
T + K+G + L K + I S AG Y C
Sbjct: 29 TLEAQEYRLVKEGSPEPWDTQNPLE-PKNKARFSIPSMTEHHAGRYRCY 76
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 44.9 bits (106), Expect = 7e-06
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 24/107 (22%)
Query: 330 IKKLDDLEVKERENAVLEVEVTSDKAD---VKWFKDGQEIKT-------------SKKVT 373
I+ ++ ++ + +L+ ++S A V W + Q + +V
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 374 IEKKGTIRKLLIRNISVHDEGEYTCSL---PD--QETSAELNVVELP 415
+ +++++V+D GEY C PD L V+E
Sbjct: 67 PGPGLGLT---LQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 37.6 bits (87), Expect = 0.003
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 417 EISVPLQDVKVSRDEKASFEIELTKGDAL---VKWYKDGKEIA-FSENVTLSIDGKKQK- 471
I ++ + + L+ A V W + + +A + ++ I +
Sbjct: 6 TIETT-GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 472 --------LIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAPAV 508
L + S + D GEY C G + L V +V
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 1e-05
Identities = 106/685 (15%), Positives = 204/685 (29%), Gaps = 237/685 (34%)
Query: 150 DGKLIKD--RQITSEKN-----------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAA 196
D K ++D + I S++ + TL L K V+ VE
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKF-----VEEVL 87
Query: 197 NLN----VDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP---SILEPLHDVSITE 249
+N + P + E ++ Y+ + D L N + S L+P +
Sbjct: 88 RINYKFLMSPIK-TEQRQPSMMTRMYI-EQRDRLY-NDNQVFAKYNVSRLQPYLKL---- 140
Query: 250 GESAVLSVQVGGEPSPKVEWYKD---GK--LI------KDRQITSEKNTHTLTLIQCSTK 298
A+L ++ P+ V GK + Q + L L C++
Sbjct: 141 -RQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 299 D------KGRYSVKVTNKEGTVESAAN--LNVDQGKAEFIKKLDDLEVKERENA--VLEV 348
+ + N + ++N L + +AE +++L L+ K EN VL
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-LRRL--LKSKPYENCLLVLL- 251
Query: 349 EVTSDKADVKWFKDGQEIKTSKK-VTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSA 407
V + F + K +T K L + ++ +L E +
Sbjct: 252 NV-QNAKAWNAF-NLS----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 408 ------ELNVVELPPEISV--PLQDVKVS------RDEKASFEIELTKGDALVKWYKDGK 453
+ +LP E+ P ++S RD A+++ W
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATWD----------NWKHVNC 352
Query: 454 EIAFSENVTLSIDG------KK--QKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ + + S++ +K +L +F
Sbjct: 353 D-KLTTIIESSLNVLEPAEYRKMFDRLSVFP---PS------------------------ 384
Query: 506 PAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLGSPGQAPLFIERF 565
+P++ L + W ++ I+
Sbjct: 385 ------AHIPTILL------------------SLIWFDV-----------------IKSD 403
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
V + L S+V + K S I I LELK
Sbjct: 404 VMVVVNK-----LHKY-------SLV-EKQPKESTIS-----IPS---IYLELKVKLENE 442
Query: 626 DAGDYKVVATNELGSATHGARVTVDVEKVGRPPINSIDIDR---NHV-HHLDNIDSPRQS 681
A +V + T D + + P + D+ +H+ HHL NI+ P +
Sbjct: 443 YALHRSIVDHYNI-------PKTFDSDDLIPPYL-----DQYFYSHIGHHLKNIEHPERM 490
Query: 682 TEVDVEKPVETAPVIDPPPPPEVLVKKGEDLK-IEVRFKALPPPKAEWTVNGTVIVPSKR 740
T V + D + +E + + W +G+++ ++
Sbjct: 491 TLF-----------------RMVFL----DFRFLEQKIRHDSTA---WNASGSILNTLQQ 526
Query: 741 VKGKAEFIKKLDDLEVKERENAVLE 765
+K +I +D + + NA+L+
Sbjct: 527 LKFYKPYICD-NDPKYERLVNAILD 550
Score = 40.6 bits (94), Expect = 0.002
Identities = 63/503 (12%), Positives = 149/503 (29%), Gaps = 157/503 (31%)
Query: 328 EFIKKLDDLEVKERENAVLEVEVTSDKADVKW-FKDGQEIKTSKKV--TIEKKGT----- 379
F+ D +V++ ++L K ++ + + ++ T+ K
Sbjct: 28 AFVDNFDCKDVQDMPKSILS------KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 380 -IRKLLIRNI-----SVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKA 433
+ ++L N + E S+ + + + + ++ VSR +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQP- 136
Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
++L + AL E+ ++NV + DG G +G
Sbjct: 137 --YLKLRQ--AL-------LELRPAKNVLI--DGV--------LG---SG---------- 162
Query: 494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELSSPDIQVKWLNLFIVPTCPLG 553
K + ++ Q ++ D ++ WLN L
Sbjct: 163 ----KTWVALDV-----------------CLSYKVQCKM---DFKIFWLN--------LK 190
Query: 554 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN-KPLLSSPKKRE---IF 609
+ +E ++ + + ++ I + + LL S +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 610 DGENIILELKEADSET-DAGDY--KVVATNELGSATHGARVT--VDVEKVGRPPINSIDI 664
N+ +++ +A + K++ T T +VT + +
Sbjct: 251 L--NV------QNAKAWNAFNLSCKILLT------TRFKQVTDFLSAATTTHISL----- 291
Query: 665 DRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPP---PPEVLVKKGEDLKIEVRFKAL 721
HH + +P + + +D P P E V ++ + +++
Sbjct: 292 ----DHHSMTL-TPDEVKSL-------LLKYLDCRPQDLPRE--VLTTNPRRLSIIAESI 337
Query: 722 PPPKAEWTVNGTVIVPSKRVKGKAE-FIKKLDDLEVKE--------RENA-----VLEV- 766
A W + V ++ E + L+ E ++ +A +L +
Sbjct: 338 RDGLATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 767 --EVTSDKAD--VKWFKNNSLIK 785
+V V SL++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVE 418
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 45.2 bits (107), Expect = 2e-05
Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 10/173 (5%)
Query: 12 PPTFSKKTKPVYAEENSEVTL--EVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHS 69
P S K+ PV + S V + + A L+ N + + F +++D
Sbjct: 9 MPFISAKSSPVIPLDGS-VKIQCQAIREA-YLTQLMIIKNSTYREIGRRLKFWNETD--- 63
Query: 70 YVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGE 129
I + + G Y + + +++ L + + GE
Sbjct: 64 --PEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGE 121
Query: 130 SAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYS 182
+ L+ P + K+G+L Q S ++ +L G Y
Sbjct: 122 NISLTCSSAHIPFDRFSLAKEGEL-SLPQHQSGEHPANFSLGPVDLNVSGIYR 173
Score = 41.4 bits (97), Expect = 4e-04
Identities = 29/203 (14%), Positives = 52/203 (25%), Gaps = 35/203 (17%)
Query: 106 VNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIK-DRQITSE 162
G P I + I S + Q E ++ K+ + R++
Sbjct: 2 AQEGDFPMPFISAKS--SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFW 59
Query: 163 -KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVS 221
+ + GRY + S
Sbjct: 60 NETDPEFVIDHMDANKAGRYQCQYRIGHYRFR-------------------YS------- 93
Query: 222 ELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQI 281
DTL++ L + + GE+ L+ P + K+G+L Q
Sbjct: 94 --DTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGEL-SLPQH 150
Query: 282 TSEKNTHTLTLIQCSTKDKGRYS 304
S ++ +L G Y
Sbjct: 151 QSGEHPANFSLGPVDLNVSGIYR 173
Score = 41.0 bits (96), Expect = 6e-04
Identities = 16/140 (11%), Positives = 39/140 (27%), Gaps = 17/140 (12%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC--------SLPDQETSAELN 410
K+ + +++ + +I ++ + G Y C +
Sbjct: 43 IIKNSTYREIGRRLKFWNETDPE-FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVT 101
Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTK-GDALVKWYKDGKEIAFSENVTLSIDGKK 469
+ P +S + + + E S K+G+ ++ G+
Sbjct: 102 GLYGKPFLSAD-RGLVLMPGENISLTCSSAHIPFDRFSLAKEGE-----LSLPQHQSGEH 155
Query: 470 Q-KLIIFSAGLEDAGEYSCR 488
+ L +G Y C
Sbjct: 156 PANFSLGPVDLNVSGIYRCY 175
Score = 32.9 bits (75), Expect = 0.24
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPA 507
K+ + + + +I AG Y C+ G + + T+E
Sbjct: 43 IIKNSTYREIGRRLKFW-NETDPEFVIDHMDANKAGRYQCQ-YRIGHYRFRYSDTLE-LV 99
Query: 508 VEFLTKLPSVTLVPH 522
V L P ++
Sbjct: 100 VTGLYGKPFLSADRG 114
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 44.8 bits (106), Expect = 3e-05
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 11/139 (7%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ----ETSAELNVV-- 412
K+ ++ +E + I +++ G Y C + S L +V
Sbjct: 37 LDKEESPAPWDRQNPLEP-KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT 95
Query: 413 --ELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
P +S L V+ + + + K+ + + Q
Sbjct: 96 GAYSKPTLSA-LPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQ 154
Query: 471 -KLIIFSAGLEDAGEYSCR 488
+ + G Y C
Sbjct: 155 AEFPMSPVTSVHGGTYRCF 173
Score = 33.7 bits (77), Expect = 0.14
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ T + K+ A + K + I S + AG Y C
Sbjct: 27 QGTLEAREYRLDKEES-PAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 44.4 bits (105), Expect = 3e-05
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 13/141 (9%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS--LPDQETSAELNVVEL-- 414
+++ + + ++ + I +I+ G Y C S + +EL
Sbjct: 37 LYREKKTAPWITR-IPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVV 95
Query: 415 -----PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSE-NVTLSIDGK 468
P +S V+ + + + K+G++ N G
Sbjct: 96 TGAYIKPTLSA-QPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGS 154
Query: 469 KQ-KLIIFSAGLEDAGEYSCR 488
+ + Y C
Sbjct: 155 SRAIFSVGPVSPSRRWWYRCY 175
Score = 37.9 bits (88), Expect = 0.005
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
+ + + Y++ K + + KK + I S E G Y C G S
Sbjct: 27 QGGQETQEYRLYREKKTAPWITRIPQE-LVKKGQFPIPSITWEHTGRYRCYYGSDTAGRS 85
Query: 498 KATLTVEAPAVEFLTKLPSVTLVP 521
+++ +E K P+++ P
Sbjct: 86 ESSDPLELVVTGAYIK-PTLSAQP 108
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 44.4 bits (105), Expect = 4e-05
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 14/138 (10%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTCS-LPDQETSA-----ELNVV 412
+G + + ++ K I +++ G+Y+C + S +L V
Sbjct: 36 LHFEG-SLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 94
Query: 413 ELPPEISVPLQ-DVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ- 470
E+ ++ + +V EK +F L ++ K+G+ GK Q
Sbjct: 95 EMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQ-----RGYGKVQA 149
Query: 471 KLIIFSAGLEDAGEYSCR 488
+ + G Y C
Sbjct: 150 EFPLGPVTTAHRGTYRCF 167
Score = 34.0 bits (78), Expect = 0.096
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ G + + +G + + K K I AG+YSC
Sbjct: 26 QGNYGAVEYQLHFEGS-LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 75
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 45.4 bits (106), Expect = 6e-05
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
L + S A W ++ + L I N++ G Y C
Sbjct: 515 NSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFC 569
Score = 38.5 bits (88), Expect = 0.010
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 444 ALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSC 487
A W E S + L I + + G Y C
Sbjct: 529 ATYSWRHKENVEQSCEPGHQSPNCI---LFIENLTAQQYGHYFC 569
Score = 34.2 bits (77), Expect = 0.19
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 201 DPYE--PKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQ 258
DPY + + S V+ ++ + + P PL VS+ LS
Sbjct: 464 DPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCP 523
Query: 259 VGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 303
+ W + + + + L + + + G Y
Sbjct: 524 MES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHY 567
Score = 31.1 bits (69), Expect = 1.5
Identities = 4/41 (9%), Positives = 11/41 (26%)
Query: 141 PSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRY 181
W + + + + L + + + G Y
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHY 567
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 43.7 bits (103), Expect = 7e-05
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 16/143 (11%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIR-KLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
++G T + + G + I ++ G Y C + + SA + ++
Sbjct: 40 LHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLD 99
Query: 414 L-------PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
+ P +S V E + + ++G+ ++
Sbjct: 100 IVIIGLYEKPSLSAQ-PGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPKVN 158
Query: 467 GKKQKLIIFSAG-LEDAGEYSCR 488
G Q F G G Y C
Sbjct: 159 GTFQAD--FPLGPATHGGTYRCF 179
Score = 31.0 bits (70), Expect = 1.1
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 440 TKGDALVKWYKDGKEIAFSENV-TLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+++G + K I + AG Y C
Sbjct: 32 DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 81
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 42.9 bits (101), Expect = 9e-05
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 382 KLLIRNISVHDEGEYTCS-LPDQETSAELNVVEL-------PPEISVPLQDVKVSRDEKA 433
L I + G Y CS S + +EL P +S VS
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSA-QPGPAVSSGGDV 111
Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ + + G YK+G + + I + +G Y C
Sbjct: 112 TLQCQTRYGFDQFALYKEGDPAPYKN----PERWYRASFPIITVTAAHSGTYRCY 162
Score = 30.6 bits (69), Expect = 1.3
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 10/51 (19%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ G L + K S + L I + AG Y C
Sbjct: 30 QGPPGVDLYRLEKLSS----------SRYQDQAVLFIPAMKRSLAGRYRCS 70
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 41.3 bits (96), Expect = 2e-04
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 383 LLIRNISVHDEGEYTCSL---PDQETSAELNVVELPP 416
+ I N+++ DEGEYTCS+ P + + + V+ +P
Sbjct: 105 ISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQ 141
Score = 39.4 bits (91), Expect = 0.001
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 442 GDALVKWYKDGKEIAFSENVTLSIDGKKQ---------KLIIFSAGLEDAGEYSCRVGDT 492
D+ ++W ++ + D + Q + I + L D GEY+C +
Sbjct: 66 EDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM 125
Query: 493 GDKESKATLTVEAP 506
+ +K+ +TV
Sbjct: 126 PVRTAKSLVTVLGI 139
Score = 34.4 bits (78), Expect = 0.046
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 22/128 (17%)
Query: 101 DIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI------ 154
D + + D ++ G + VL QV ++W +
Sbjct: 26 DDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEK 85
Query: 155 ------KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKES 208
+ + +TS + ++++ + D+G Y+ + + + + V
Sbjct: 86 RALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTV-------- 136
Query: 209 KETPPSPP 216
P P
Sbjct: 137 -LGIPQKP 143
Score = 31.3 bits (70), Expect = 0.49
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 241 PLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLI------------KDRQITSEKNTH 288
D ++ G + VL QV ++W + + + +TS +
Sbjct: 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHEL 103
Query: 289 TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
++++ + D+G Y+ + + + + V
Sbjct: 104 SISISNVALADEGEYTCSI-FTMPVRTAKSLVTV 136
Score = 28.6 bits (63), Expect = 4.2
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 561 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD---------G 611
++TV GT+ L +VK S+ W + L +KR + D
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 612 ENIILELKEADSETDAGDYK-VVATNELGSATHGARVTV 649
+ + + D G+Y + T + +A + VTV
Sbjct: 101 HELSISISNVA-LADEGEYTCSIFTMPVRTAK--SLVTV 136
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 41.1 bits (96), Expect = 2e-04
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 405 TSAELNVVELPPEISVPL-QDV----KVSRDEKASF-EIELTKGDA--LVKWYKDGKEIA 456
S + V+ I + + ++S + A+ E+ + +V Y++GK+
Sbjct: 3 GSGQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQD 62
Query: 457 ------FSENVTLSIDGKKQ---KLIIFSAGLEDAGEYSCRVGD-TGDKESKATLTVEAP 506
+ L + + L I + D G Y+C D + +E+ L VE P
Sbjct: 63 AEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122
Score = 34.5 bits (79), Expect = 0.034
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 29/111 (26%)
Query: 342 ENAVL----EVEVTSDKADVKWFK-----------DGQEIKTSKKVTIEKKGTIRK---- 382
+ A L + +V W++ +G++ + + + K
Sbjct: 22 DEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIG 81
Query: 383 -----LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQD 424
L I+N+ DEG YTC +E + EL V + P P +
Sbjct: 82 EGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED-PFYWINPGRS 131
Score = 29.5 bits (66), Expect = 1.7
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 27/116 (23%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGGEPSPK---VEW-----------YKDGKLIKDRQIT 160
++ P H + G+ A L ++ + V W Y++GK Q
Sbjct: 8 RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 67
Query: 161 SEKN-TH-----------TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV-DPY 203
+ T L + D+G Y+ + E+A L V DP+
Sbjct: 68 EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 123
Score = 28.4 bits (63), Expect = 4.6
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 26/112 (23%)
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSPK---VEW-----------YKDGKLIKDRQIT 282
++ P H + G+ A L ++ + V W Y++GK Q
Sbjct: 8 RVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAP 67
Query: 283 SEKN-TH-----------TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ T L + D+G Y+ + E+A L V
Sbjct: 68 EYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 42.2 bits (99), Expect = 3e-04
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC----SLPDQETSAELNVVEL 414
+G + + ++ K I +++ G+Y+C E S L++V
Sbjct: 39 LHFEGS-LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 97
Query: 415 ----PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
P +SV +V EK +F L ++ K+G+ GK Q
Sbjct: 98 EMYDTPTLSV-HPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQ-----RGYGKVQ 151
Query: 471 -KLIIFSAGLEDAGEYSCR 488
+ + G Y C
Sbjct: 152 AEFPLGPVTTAHRGTYRCF 170
Score = 33.7 bits (77), Expect = 0.14
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ G + + +G + + K K I AG+YSC
Sbjct: 29 QGNYGAVEYQLHFEGS-LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI 78
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.8 bits (99), Expect = 4e-04
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 341 RENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDEGEYTC 398
A L+ S+ A V W +K + LLI N+S D G Y C
Sbjct: 548 GGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLM--GRKNLLIFNLSEGDSGVYQC 603
Score = 35.9 bits (81), Expect = 0.058
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 444 ALVKWYKDGKEIAF--SENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATL 501
A V W + + + L+IF+ D+G Y C + ++ +
Sbjct: 562 ARVFWKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEERVKNKTVFQV 617
Query: 502 TVEA-PAVEFLTKLPSVTLVPHL 523
+ V+ + K + +
Sbjct: 618 VAKHVLEVKVVPKPVVAPTLSVV 640
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 39.5 bits (92), Expect = 4e-04
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 22/93 (23%)
Query: 434 SFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQK-------------------LII 474
S+ + + + W K + N L D + LII
Sbjct: 17 SYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLII 76
Query: 475 FSAGLEDAGEYSCRV---GDTGDKESKATLTVE 504
+ L+D G Y CR+ G DK+ + L ++
Sbjct: 77 KNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
Score = 29.1 bits (65), Expect = 2.0
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 333 LDDLEVKERENAVL----EVEVTSDKADVKWFK---------------DGQEIKTSKKVT 373
+D +V+ +NA L + + + W K D + + K
Sbjct: 1 MDGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSR 60
Query: 374 IEKKGTIRK----LLIRNISVHDEGEYTCSL------PDQETSAELNV 411
+ KG + K L+I+N+++ D G Y C + D++ +L++
Sbjct: 61 YQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 41.3 bits (97), Expect = 5e-04
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 214 SPPPYVVSELDTLQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYK 271
+ L V PS+ L P + ++ ++ + P V W
Sbjct: 90 GNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKA 149
Query: 272 DGKLIKDRQITS----EKNTH-----TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
D +K T+ + N L+L K YS +VT++ TVE
Sbjct: 150 DSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 202
Score = 35.9 bits (83), Expect = 0.026
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 104 VKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIKDRQITS 161
+ V PS+ L P + ++ ++ + P V W D +K T+
Sbjct: 102 LTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETT 161
Query: 162 ----EKNTH-----TLTLIQCSTKDKGRYSVKVTNKEGTVE 193
+ N L+L K YS +VT++ TVE
Sbjct: 162 TPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 202
Score = 30.1 bits (68), Expect = 2.2
Identities = 27/134 (20%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 376 KKGTIRKLLIRNISVHDEGEYTCSLPDQETS------AELNVVELPPEI-SVPLQDVKVS 428
K G L + + DE Y C +L V+ P SV L S
Sbjct: 63 KSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLF--PPS 120
Query: 429 RDEKASFEIELT-------KGDALVKWYKDGKEIAFSENVTLSIDGKKQK------LIIF 475
+E + + L G V W D + T K L +
Sbjct: 121 SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLT 180
Query: 476 SAGLEDAGEYSCRV 489
+ YSC+V
Sbjct: 181 PEQWKSHRSYSCQV 194
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 39.5 bits (92), Expect = 5e-04
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 449 YKDGKEIAFSENVTLSIDGKKQK----LIIFSAGLEDAGEYSCRV---GDTGDKESKATL 501
+ +G + + ++ ++ G + L I ++ D+G Y CRV G D++ +L
Sbjct: 48 WTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSL 107
Query: 502 TVEAPAV 508
V+ V
Sbjct: 108 QVKPELV 114
Score = 28.0 bits (62), Expect = 4.9
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 362 DGQEIKTSKKVTIEKKGTIRK----LLIRNISVHDEGEYTC--SLPDQETSAELNV-VEL 414
+G + K KG I + L I N D G Y C +P ++ +++
Sbjct: 50 NGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQV 109
Query: 415 PPEIS 419
PE+
Sbjct: 110 KPELV 114
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 41.1 bits (96), Expect = 7e-04
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 16/143 (11%)
Query: 359 WFKDGQEIKTSKKVTIEKKGTIR-KLLIRNISVHDEGEYTC----SLPDQETSAELNVVE 413
++G+ T + G + I + G Y C + + SA + ++
Sbjct: 39 LHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLD 98
Query: 414 L-------PPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSID 466
+ P +S V E + + ++G+ + ++
Sbjct: 99 IVITGLYEKPSLSAQ-PGPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVN 157
Query: 467 GKKQKLIIFSAG-LEDAGEYSCR 488
G Q F G G Y C
Sbjct: 158 GTFQAD--FPLGPATHGGTYRCF 178
Score = 31.9 bits (72), Expect = 0.65
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 448 WYKDGKEIAFSENVTLSIDGKKQ-KLIIFSAGLEDAGEYSC--RVGDTGDKESKATLTVE 504
+++GK + DG + I + AG Y C V + + S + ++
Sbjct: 39 LHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLD 98
Query: 505 APAVEFLTKLPSVTLVPH 522
+ L + PS++ P
Sbjct: 99 IV-ITGLYEKPSLSAQPG 115
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 40.0 bits (93), Expect = 0.001
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 383 LLIRNISVHDEGEYTCSLPDQETSAELNV---VELPPEISVPLQDVKVSRDEKASFEIEL 439
L + I + + GEY C + A+ V V P + L V + + + + E
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMK-ENEDKYMCES 142
Query: 440 TK---GDALVKWYKDGKEIA----FSENVTLSI-----DGKKQK---LIIFSAGLEDAGE 484
+ + W K ++ SE+V DG L + S+ +
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTV 202
Query: 485 YSCRV 489
Y C V
Sbjct: 203 YQCVV 207
Score = 39.7 bits (92), Expect = 0.002
Identities = 28/193 (14%), Positives = 53/193 (27%), Gaps = 20/193 (10%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
+ ++ + G+ + + S + + + I+ E G Y +A+
Sbjct: 50 DKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ 109
Query: 100 MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQ 158
+ ++V P+ L V + E E + G P + W K +
Sbjct: 110 GTVQLEVV----ASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPI 165
Query: 159 ITSE--------KN-------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPY 203
SE KN T L L Y V + +N +
Sbjct: 166 EISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA 225
Query: 204 EPKESKETPPSPP 216
S+
Sbjct: 226 RHSLSETEKTDNF 238
Score = 38.5 bits (89), Expect = 0.005
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 20/112 (17%)
Query: 443 DALVKWYKDGKEIAFSENVTLSIDGKKQK---LIIFSAGLEDAGEYSCRVGDTGDKESKA 499
+ V + + AF +S K L + LE+AGEY C V T K
Sbjct: 52 EVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGT 111
Query: 500 T-LTVEAPAVEFLTKLPSVTLVPH-----LGDATFQVELSS---PDIQVKWL 542
L V A P+ L+ + + E S I + W
Sbjct: 112 VQLEVVAS--------PASRLLLDQVGMKENEDKYMCESSGFYPEAINITWE 155
Score = 28.1 bits (62), Expect = 9.4
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 9/94 (9%)
Query: 216 PPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGK 274
P L+V P+ L V + E E + G P + W K +
Sbjct: 104 TPLKAQGTVQLEVV----ASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQ 159
Query: 275 LIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVT 308
SE T+ D G ++V
Sbjct: 160 KFPHPIEISEDVITGPTIKN---MD-GTFNVTSC 189
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 38.4 bits (89), Expect = 0.002
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 346 LEVEVTSDKADVKWFKDGQEIKTSK--KVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQ 403
++ E S A V + + +EI K+ I++ I ++ + + DEG YT + D
Sbjct: 59 MQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDG 118
Query: 404 ETSAELNVV 412
+ + +V
Sbjct: 119 KATGHSTLV 127
Score = 35.7 bits (82), Expect = 0.018
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 570 VKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL-KEADSETDA 627
+ EKG +R + K S + + N K + PK + D I+E+ E + D
Sbjct: 49 ILEKGQVRFWMQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDE 108
Query: 628 GDYKVVATNELGSAT 642
G Y + +
Sbjct: 109 GTYTFQIQDGKATGH 123
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 39.1 bits (90), Expect = 0.002
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 6/107 (5%)
Query: 112 EKPSILE-PLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 169
KP +E P V++ G S L+ ++ + V+W + + S+ LT
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL--GAVQSDTGRSVLT 62
Query: 170 LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
+ S G + T + L V Y P+
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV--YAFPNQLTVSPAAL 107
Score = 37.2 bits (85), Expect = 0.012
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 234 EKPSILE-PLHDVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLIKDRQITSEKNTHTLT 291
KP +E P V++ G S L+ ++ + V+W + + S+ LT
Sbjct: 5 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL--GAVQSDTGRSVLT 62
Query: 292 LIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
+ S G + T + L V
Sbjct: 63 VRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 32.2 bits (72), Expect = 0.46
Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 28/177 (15%)
Query: 336 LEVKERENAVLE--VEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNISVHDE 393
+ V + L + A V+W + ++ L +RN S+
Sbjct: 17 VAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAA 71
Query: 394 GEYTCSL----PDQETSAELNVVELPPEISVPLQDVKVSRD------------EKASFEI 437
G C + + +L V P +++V + + +
Sbjct: 72 GTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSF 131
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKK----QKLIIFSAGLEDAG-EYSCRV 489
L G ++ + E D + C+
Sbjct: 132 SLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQA 188
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 39.8 bits (93), Expect = 0.003
Identities = 81/442 (18%), Positives = 146/442 (33%), Gaps = 93/442 (21%)
Query: 104 VKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITS 161
V V P++ L P + ++ ++ + P V W DG +K T+
Sbjct: 105 VTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT 164
Query: 162 E-----KNTHT----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETP 212
+ N + L+L K YS +VT++ TVE K
Sbjct: 165 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE---------------KTVA 209
Query: 213 PSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVS-ITEGESAVLSVQVGG-EPSP-KVEW 269
P+ + PS+ PL S T G +A L V P P V W
Sbjct: 210 PTECS-------------ASTKGPSVF-PLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW 255
Query: 270 YKDGKLIKDRQITS-----EKNTH------TLTLIQCSTKDKGRYSVKVTNKEGTVESAA 318
+ + T + T+ T+ Y V +K +
Sbjct: 256 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQT---YICNVNHKPSNTKVDK 310
Query: 319 NLNVDQGKAEFIKKLDDLEV----KERENAVLEVEVTSDKADVK--WFKDGQEIKTSKKV 372
+ + F+ + + E + V+V+ + VK W+ DG ++ +K
Sbjct: 311 RVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTK 370
Query: 373 TIEKK-----GTIRKLLIRNISVHDEGEYTCSL-------PDQETSAELNVVELPPEISV 420
E++ + L + + + D EY C + P ++T ++ P++
Sbjct: 371 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 430
Query: 421 PLQDVKVSRDEKASFEIELT---KG----DALVKWYKDGKEIAFSENVTLSIDGKKQ--- 470
SR+E ++ LT KG D V+W +G+ + +D
Sbjct: 431 LP----PSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL 486
Query: 471 --KLIIFSAGLEDAGEYSCRVG 490
KL + + + +SC V
Sbjct: 487 YSKLTVDKSRWQQGNVFSCSVM 508
Score = 31.7 bits (72), Expect = 1.1
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 9/114 (7%)
Query: 46 WYYNGEPLQETDEVVFSDQSDM-HSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPV 104
WY +G + Q + + VS++T+ + Y N+ A ++ +
Sbjct: 357 WYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTI 416
Query: 105 KVNTGKPEKPS--ILEPLHDVSITEGESAVLSVQVGGEPSPK---VEWYKDGKL 153
G+P +P L P + L+ V G P VEW +G+
Sbjct: 417 SKAKGQPREPQVYTLPPSRE--EMTKNQVSLTCLVKG-FYPSDIAVEWESNGQP 467
Score = 29.0 bits (65), Expect = 6.9
Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 31/199 (15%)
Query: 371 KVTIEKKGTIRKLLIRNISVHDEGEYTCSLPDQETSAELN-----VVELPPEISVPLQDV 425
+ + K GT L I + DE +Y C+ + ++ + V L + P +
Sbjct: 60 RFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTL 119
Query: 426 KV-SRDEKASFEIELT---KG----DALVKWYKDGKEIAFSENVTLSIDGKKQK------ 471
S +E + + L V W DG + T K
Sbjct: 120 FPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY 179
Query: 472 LIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATF--Q 529
L + + YSC+V G K E A TK PSV + +T
Sbjct: 180 LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSAS---TKGPSVFPLAPSSKSTSGGT 236
Query: 530 VELS------SP-DIQVKW 541
L P + V W
Sbjct: 237 AALGCLVKDYFPQPVTVSW 255
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 37.2 bits (86), Expect = 0.003
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 122 DVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI----------------KDRQITSEKN 164
+++ G + L++ E ++ W+ K R + +
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGR-VRLDPQ 71
Query: 165 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDPYEP 205
+ L + + +D Y ++V K G + L V +P
Sbjct: 72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV--LDP 111
Score = 35.7 bits (82), Expect = 0.011
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 244 DVSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI----------------KDRQITSEKN 286
+++ G + L++ E ++ W+ K R + +
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGR-VRLDPQ 71
Query: 287 THTLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNV 322
+ L + + +D Y ++V K G + L V
Sbjct: 72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
Score = 30.3 bits (68), Expect = 0.86
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 439 LTKGDALVKWYKDGKE-IAFSENVTLSIDGKKQK-----------LIIFSAGLEDAGEYS 486
L + + W+ + I ++ K K L I ED Y
Sbjct: 30 LPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYI 89
Query: 487 CRV--GDTGDKESKATLTVEAP 506
RV ++E K L V P
Sbjct: 90 MRVLKKTGNEQEWKIKLQVLDP 111
Score = 30.3 bits (68), Expect = 0.87
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 13 PTFSKKTKPVYAEENSEVTLEVRLVAVPEPD-LLWYYNGEPL--------QETDEVVFSD 63
+ + S VTL + L W+Y + + E F
Sbjct: 5 SSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKG 64
Query: 64 QSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
+ + + I ++K + Y + + G +
Sbjct: 65 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQ 100
Score = 29.9 bits (67), Expect = 1.2
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 383 LLIRNISVHDEGEYTCSLPD-----QETSAELNVVELPPE 417
L I + D Y + QE +L V++ P+
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPK 114
Score = 29.1 bits (65), Expect = 2.2
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 589 SIVWFRNNKPLL------------SSPKKREIFDGENIILELKEADSETDAGDYKVVATN 636
+ WF + S K R D ++ L + + + D Y +
Sbjct: 36 QLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV-QKEDNSTYIMRVLK 94
Query: 637 ELGSATHGARVTVDV-EKVGRPPIN 660
+ G+ ++ + V + V +P I
Sbjct: 95 KTGN-EQEWKIKLQVLDPVPKPVIK 118
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 38.4 bits (89), Expect = 0.005
Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 20/154 (12%)
Query: 357 VKWFKDGQEIKTSKKVTIEKK-----GTIRKLLIRNISVHDEGEYTCSL-------PDQE 404
WF D E+ T++ EK+ ++ +L I + + C + P ++
Sbjct: 53 FSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEK 112
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK---GDALVKWYKDGKEIAFSENV 461
+ ++ P++ + + S + D +W +G+ +N
Sbjct: 113 SISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT 172
Query: 462 TLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG 490
++D KL + + ++C V
Sbjct: 173 PPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVL 206
Score = 30.3 bits (68), Expect = 1.8
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 17/115 (14%)
Query: 442 GDALVKWYKDGKEI-AFSENVTLSIDGKKQ----KLIIFSAGLEDAGEYSCRVGDTGDKE 496
+ W+ D E+ + +L I + + C+V
Sbjct: 49 PEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108
Query: 497 SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS--------SP-DIQVKWL 542
+ E + P V + + Q ++S P DI +W
Sbjct: 109 PIEKSISKP---EGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWK 160
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 36.4 bits (84), Expect = 0.005
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 407 AELNVVELPPEISVPLQD-VKVSRDEKASFEIEL-----TKGDALVKWYKDGKEIAFSEN 460
A + P+I+ V + + TK ++++ + + F
Sbjct: 2 ARIRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESE 61
Query: 461 VT--LSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAP 506
+ ++ L I + ED G Y RV + E K TL V P
Sbjct: 62 FKGRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP 109
Score = 34.8 bits (80), Expect = 0.018
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 22/106 (20%)
Query: 118 EPLHDVSITEGESAVLSVQV------------GGEPSPKVEWYKDGKLI------KDRQI 159
+ D++ G + L + + +E+ + K R +
Sbjct: 8 GSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGR-V 66
Query: 160 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEP 205
E+N L + +DKG Y ++V + L V ++P
Sbjct: 67 YLEENNGALHISNVRKEDKGTYYMRVLRETENELK-ITLEV--FDP 109
Score = 33.7 bits (77), Expect = 0.055
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 20/101 (19%)
Query: 240 EPLHDVSITEGESAVLSVQV------------GGEPSPKVEWYKDGKLI------KDRQI 281
+ D++ G + L + + +E+ + K R +
Sbjct: 8 GSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGR-V 66
Query: 282 TSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNV 322
E+N L + +DKG Y ++V + L V
Sbjct: 67 YLEENNGALHISNVRKEDKGTYYMRVLRETENELK-ITLEV 106
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 37.7 bits (87), Expect = 0.006
Identities = 24/196 (12%), Positives = 49/196 (25%), Gaps = 44/196 (22%)
Query: 117 LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTK 176
L+P + G S L+ + + R T + +
Sbjct: 7 LQP-RVAFVERGGSLWLNCSTNCPRPERGGL----ETSLRRNGTQRGLRWLARQLVDIRE 61
Query: 177 DKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKP 236
+ + T+++ + ++ + E P PP
Sbjct: 62 PETQPVCFFRCARRTLQARGLIRT--FQRPDRVELMPLPPW------------------- 100
Query: 237 SILEPLHDVSITEGESAVLSVQV-GGEPSPK--VEWYKDGKLIKDRQITSEK-----NTH 288
GE+ LS +V G P + + + + R E
Sbjct: 101 ----------QPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVL 150
Query: 289 TLTLIQCSTKDKGRYS 304
T T++ +S
Sbjct: 151 TATVLARREDHGANFS 166
Score = 29.3 bits (65), Expect = 3.8
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 11/107 (10%)
Query: 84 EGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPS 142
E + + ++ +P++ ++ GE+ LS +V G P
Sbjct: 63 ETQPVCFFRCARRTLQARGLIRTF-QRPDRVELMPL--PPWQPVGENFTLSCRVPGAGPR 119
Query: 143 PK--VEWYKDGKLIKDRQITSEK-----NTHTLTLIQCSTKDKGRYS 182
+ + + + R E T T++ +S
Sbjct: 120 ASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFS 166
Score = 28.5 bits (63), Expect = 7.1
Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 10/101 (9%)
Query: 542 LNLFIVPTCPLGSPGQAPLFIERFEEKTVKEKGTIR-LMAKVKASPAPSIVWFRNNKPLL 600
+ F P P V E T+ + + ++ R + L+
Sbjct: 83 IRTFQRPDRVELMPLPPWQ--------PVGENFTLSCRVPGAGPRASLTLTLLRGAQELI 134
Query: 601 SSPKKREIFDGENIILELK-EADSETDAGDYKVVATNELGS 640
E +L A E ++ A +L
Sbjct: 135 RRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 37.9 bits (88), Expect = 0.006
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 20/154 (12%)
Query: 357 VKWFKDGQEIKTSKKVTIEK--KGTIRKLLIRNISV---HDEGEYTCSL-------PDQE 404
WF D E+ T++ E+ T R + I + E+ C + P ++
Sbjct: 39 FSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEK 98
Query: 405 TSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTK---GDALVKWYKDGKEIAFSENV 461
T ++ P++ + +K S +T D V+W +G+ +N
Sbjct: 99 TISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNT 158
Query: 462 TLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG 490
+D KL + + E ++C V
Sbjct: 159 QPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVL 192
Score = 30.2 bits (68), Expect = 1.8
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 17/115 (14%)
Query: 442 GDALVKWYKDGKEIAFSENVTLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVGDTGDKE 496
+ W+ D E+ ++ +L I + E+ CRV
Sbjct: 35 PEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRV---NSAA 91
Query: 497 SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS--------SP-DIQVKWL 542
A + + K P V +P + + ++S P DI V+W
Sbjct: 92 FPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWE 146
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.9 bits (82), Expect = 0.007
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEA 505
+ W + K I E+ + + + LE +G Y C + +++ L + A
Sbjct: 36 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 95
Score = 35.5 bits (81), Expect = 0.009
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 109 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--ITSEKNTH 166
G E I + + VSI+ G + +L+ P ++ W + K I + +
Sbjct: 3 GNEEMGGITQTPYKVSIS-GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED 59
Query: 167 TLTLIQCS-TKDKGRYSVKVTNKEGTVES 194
L+L + S + G Y + +
Sbjct: 60 HLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 35.5 bits (81), Expect = 0.009
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 231 GKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQ--ITSEKNTH 288
G E I + + VSI+ G + +L+ P ++ W + K I + +
Sbjct: 3 GNEEMGGITQTPYKVSIS-GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED 59
Query: 289 TLTLIQCS-TKDKGRYSVKVTNKEGTVES 316
L+L + S + G Y + +
Sbjct: 60 HLSLKEFSELEQSGYYVCYPRGSKPEDAN 88
Score = 32.4 bits (73), Expect = 0.11
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 566 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 625
V GT ++ P I+W N+K + + I E+ L LKE
Sbjct: 13 TPYKVSISGT-TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDED-HLSLKEFSELE 70
Query: 626 DAGDYKVVATNELGSA 641
+G Y
Sbjct: 71 QSGYYVCYPRGSKPED 86
Score = 31.3 bits (70), Expect = 0.29
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 352 SDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNIS-VHDEGEYTCSLPDQETSAE 408
+++ W + + I + L ++ S + G Y C +
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
Score = 27.4 bits (60), Expect = 6.5
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 23 YAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR 82
Y S T+ + P ++LW +N + + ++ + H +++K +
Sbjct: 15 YKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFSEL 69
Query: 83 EE-GVYTVVAKNREGEAK 99
E+ G Y + + E
Sbjct: 70 EQSGYYVCYPRGSKPEDA 87
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 38.0 bits (87), Expect = 0.010
Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 25/195 (12%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
PEP +LW E + SD + SI+T+ + + + + +
Sbjct: 33 PEPQILWRLGAELQPGGRQQRLSD----GTQESIITLPHLNHTQAFLSCSLNWGNSLQIL 88
Query: 100 MDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVG---GEPSPKVEWYKDGKL--- 153
V++ G P P+I L + S + + G P+ +
Sbjct: 89 D--QVELRAGYP--PAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQ 144
Query: 154 -----IKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKES 208
I D ++ ++ V+ N GT S
Sbjct: 145 TQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMS------PQLCLDPM 198
Query: 209 KETPPSPPPYVVSEL 223
PP +
Sbjct: 199 DVVKLEPPMLRTMDP 213
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.6 bits (82), Expect = 0.012
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 30/117 (25%)
Query: 417 EISVPLQDVKVSRDEKA----SFEIELTKGDAL-VKWYKDGKEIAFSENVTLSIDGKKQK 471
I+ P + ++ ++ E A F + L ++W + + V + G K
Sbjct: 7 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 66
Query: 472 ------------------------LIIFSAGLEDAGEYSCRVGDTGDKESKA-TLTV 503
+ + + L D G Y C+V +K L V
Sbjct: 67 DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 30.2 bits (68), Expect = 1.1
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 383 LLIRNISVHDEGEYTCSLPD----QETSAELNVVE 413
+ + N+ + D G Y C + L V+
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 38.0 bits (88), Expect = 0.012
Identities = 42/295 (14%), Positives = 76/295 (25%), Gaps = 37/295 (12%)
Query: 104 VKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP--KVEWYKDGKLIKDRQ--- 158
V V++ P P + + +G + + G P V W + G+ + R
Sbjct: 118 VTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPP 177
Query: 159 -ITSEKNTHT----LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPP 213
+ + +T LTL + V + + P
Sbjct: 178 SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDV----------TVPCPVPS 227
Query: 214 SPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG---EPSPKVEWY 270
+PP S T + P + S+ P + + G A L+ + G W
Sbjct: 228 TPPTPSPSTPPTPSPSCCHP-RLSLHRPALE-DLLLGSEANLTCTLTGLRDASGVTFTWT 285
Query: 271 KDGKLIKDRQITSEKNTHT------LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
+ L ++ E A L+
Sbjct: 286 PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSG 345
Query: 325 GKAE---FIKKLDDLEVKERENAVLEVEVTS---DKADVKWFKDGQEIKTSKKVT 373
+ E+ E L V+W + QE+ K +T
Sbjct: 346 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT 400
Score = 36.1 bits (83), Expect = 0.050
Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 12/179 (6%)
Query: 10 GIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLL---WYYNGEPLQETDEVVFSDQSD 66
P + SE L L + + + W + D
Sbjct: 245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPE-RDLCG 303
Query: 67 MHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT 126
+S S++ + +T A E + + + + L P +
Sbjct: 304 CYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELA 363
Query: 127 EGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
E L+ G P V W + + + + T Q ++ ++V
Sbjct: 364 LNELVTLTCLARGFSPKDVLVRWLQGSQEL------PREKYLTWASRQEPSQGTTTFAV 416
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 37.6 bits (87), Expect = 0.015
Identities = 50/326 (15%), Positives = 97/326 (29%), Gaps = 42/326 (12%)
Query: 104 VKVNTGKPEKPSILEPLHDVSITEGESAVLS-VQVGGEPSPKVEWYKDGKLIKDRQITSE 162
V V++ K PS+ T G S L + G P P + G L
Sbjct: 114 VTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA 173
Query: 163 ---KNTHTLT---LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
+ +TL+ + ST + V + + + EP+ P P
Sbjct: 174 VLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDK-----KIEPRGPTIKPCPPC 228
Query: 217 PYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG----EPSPKVEWYKD 272
L I P + S +++ V +P ++ W+ +
Sbjct: 229 KCPAPNLLG-------GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVN 281
Query: 273 GKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
+ Q + + + L + + KV NK+ ++ +
Sbjct: 282 NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPK 341
Query: 325 GKAEFIKKLDD---LEVKERENAVLEVEVTSDKAD---VKWFKDGQEIKTSK--KVTIEK 376
G + E ++ L VT + V+W +G+ K + ++
Sbjct: 342 GSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDS 401
Query: 377 KGTIRKLLIRNISVHD--EGE-YTCS 399
G+ + + E Y+CS
Sbjct: 402 DGSYFMYSKLRVEKKNWVERNSYSCS 427
Score = 36.8 bits (85), Expect = 0.026
Identities = 48/272 (17%), Positives = 81/272 (29%), Gaps = 57/272 (20%)
Query: 40 PEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVA-KNREGEA 98
PEP L + +G QSD+++ S VT+ S + + VA +
Sbjct: 152 PEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKV 211
Query: 99 KMDIPVKVNTGKPEKP--------------SILEPLHDVSITEGESAVLSVQVGG----E 140
I + T KP P I P + S +++ V +
Sbjct: 212 DKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDD 271
Query: 141 PSPKVEWYKDGKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTNKEGTV 192
P ++ W+ + + Q + + + L + + KV NK+
Sbjct: 272 PDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP- 330
Query: 193 ESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGES 252
P E SK P V +L P + +
Sbjct: 331 --------APIERTISKPKGSVRAPQV-----------------YVLPPPEEEMT--KKQ 363
Query: 253 AVLSVQVGG-EPSP-KVEWYKDGKLIKDRQIT 282
L+ V P VEW +GK + + T
Sbjct: 364 VTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT 395
Score = 34.9 bits (80), Expect = 0.11
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 20/154 (12%)
Query: 357 VKWFKDGQEIKTSKKVTIEK--KGTIR---KLLIRNISVHDEGEYTCSLPDQETSAELNV 411
+ WF + E+ T++ T + T+R L I++ E+ C + +++ A +
Sbjct: 276 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIER 335
Query: 412 VELPPEISVPLQDVKV---SRDEKASFEIELT-------KGDALVKWYKDGKEIAFSENV 461
P+ SV V V +E ++ LT D V+W +GK +N
Sbjct: 336 TISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT 395
Query: 462 TLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG 490
+D KL + + YSC V
Sbjct: 396 EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVV 429
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 35.3 bits (81), Expect = 0.016
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 449 YKDGKEIAFSENVTLSIDGKKQK----LIIFSAGLEDAGEYSCRV---GDTGDKESKATL 501
DG I ++ ++ GK Q L I + D+G Y CR+ G D + L
Sbjct: 48 RTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRL 107
Query: 502 TVEAPAV 508
+ V
Sbjct: 108 ELRRALV 114
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 36.8 bits (85), Expect = 0.016
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 20/154 (12%)
Query: 357 VKWFKDGQEIKTSKKVTIEK--KGTIRKLLIRNISV---HDEGEYTCSLPDQETSAELNV 411
W+ DG E+ +K E+ T R + + + + EY C + ++ A +
Sbjct: 39 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEK 98
Query: 412 VELPPEISVPLQDVKV---SRDEKASFEIELT-------KGDALVKWYKDGKEIAFSENV 461
+ V SRDE ++ LT D V+W +G+ +
Sbjct: 99 TISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT 158
Query: 462 TLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG 490
+D KL + + + +SC V
Sbjct: 159 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM 192
Score = 32.2 bits (73), Expect = 0.43
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 442 GDALVKWYKDGKEI--AFSENVTLSIDGK---KQKLIIFSAGLEDAGEYSCRVGDTGDKE 496
+ WY DG E+ A ++ + L + + EY C+V +K
Sbjct: 35 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV---SNKA 91
Query: 497 SKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS--------SP-DIQVKWL 542
A + + + P V +P D + ++S P DI V+W
Sbjct: 92 LPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWE 146
Score = 29.5 bits (66), Expect = 3.6
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 115 SILEPLHDVSITEGESAVLSVQVGG----EPSPKVEWYKDGKLIKDRQITSEK------- 163
+ P ++ + ++ V +P K WY DG + + + +
Sbjct: 5 FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY 64
Query: 164 -NTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPP 217
LT++ + Y KV+NK ++ +P+E + P
Sbjct: 65 RVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR 119
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 37.2 bits (86), Expect = 0.017
Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 48/326 (14%)
Query: 104 VKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQITS 161
V V++ K PS+ + L V G P P V W +
Sbjct: 110 VTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA 169
Query: 162 E--KNTHTLT---LIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPP 216
+ +TL+ + S + + V + S+ ++ +
Sbjct: 170 VLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPA----SSTKVDKKIVPRDCGCKPCICTV 225
Query: 217 PYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLS-VQVGGEPSP---KVEWYKD 272
P V S I P ++ + ++ V V + W+ D
Sbjct: 226 PEVSS--------------VFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVD 271
Query: 273 GKLIKDRQITSEKNTH--------TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDQ 324
+ Q + L ++ + + +V + ++ +
Sbjct: 272 NVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTK 331
Query: 325 GKAEFIKKLD---DLEVKERENAVLEVEVTS---DKADVKWFKDGQEIKTSK--KVTIEK 376
GK + E ++ L +T + V+W DGQ + K + ++
Sbjct: 332 GKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDT 391
Query: 377 KGTIRKLLIRNISVHD--EGE-YTCS 399
G+ N+ + G +TCS
Sbjct: 392 DGSYFVYSKLNVQKSNWEAGNTFTCS 417
Score = 36.0 bits (83), Expect = 0.044
Identities = 38/244 (15%), Positives = 69/244 (28%), Gaps = 51/244 (20%)
Query: 64 QSDMHSYVSIVTIKSIKKREEGVYTVVA-KNREGEAKMDIPVKVNTGKPE--------KP 114
QSD+++ S VT+ S + E V VA + I + KP
Sbjct: 172 QSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSV 231
Query: 115 SILEPLHDVSITEGESAVLS-VQVGGEPSP---KVEWYKDGKLIKDRQITSEKNTH---- 166
I P ++ + ++ V V + W+ D + Q +
Sbjct: 232 FIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTF 291
Query: 167 ----TLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSE 222
L ++ + + +V + P E SK P V
Sbjct: 292 RVVSALPIMHQDWLNGKEFKCRVNSAAFP---------APIEKTISKTKGKPRAPQV--- 339
Query: 223 LDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG-EPSP-KVEWYKDGKLIKDRQ 280
+ P + + L+ + P VEW DG+ ++ +
Sbjct: 340 --------------YTIPPPKEQ--MAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYK 383
Query: 281 ITSE 284
T
Sbjct: 384 NTQP 387
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 36.8 bits (85), Expect = 0.018
Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 28/170 (16%)
Query: 345 VLEVEVTSDKADVKWFKDGQEIKTSKKVTIEK--KGTIRKLLIRNISV---HDEGEYTCS 399
V++V + W+ DG E+ +K E+ T R + + + + EY C
Sbjct: 48 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 107
Query: 400 LPDQ-------ETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELT---KG----DAL 445
+ ++ +T ++ P++ SRDE ++ LT KG D
Sbjct: 108 VSNKALPAPIEKTISKAKGQPREPQVYTLPP----SRDELTKNQVSLTCLVKGFYPSDIA 163
Query: 446 VKWYKDGKEIAFSENVTLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG 490
V+W +G+ + +D KL + + + +SC V
Sbjct: 164 VEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM 213
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 35.0 bits (80), Expect = 0.018
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 449 YKDGKEIAFSENVTLSIDGKKQK----LIIFSAGLEDAGEYSCRV---GDTGDKESKATL 501
+ +G + N + G + L I + + D G Y C V G + +
Sbjct: 49 WTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
Query: 502 TVEA 505
E
Sbjct: 109 KPEL 112
Score = 29.9 bits (67), Expect = 0.95
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 362 DGQEIKTSKKVTIEKKGTIRK----LLIRNISVHDEGEYTCS------LPDQETSAELNV 411
+G + + + KG I + L I N V D G Y C + E+
Sbjct: 51 NGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKP 110
Query: 412 VELP 415
+P
Sbjct: 111 ELVP 114
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 36.4 bits (84), Expect = 0.021
Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 20/154 (12%)
Query: 357 VKWFKDGQEIKTSKKVTIEK--KGTIR---KLLIRNISVHDEGEYTCSLPDQETSAELNV 411
+ WF + E+ T++ T + TIR L I++ E+ C + +++ + +
Sbjct: 47 ISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIER 106
Query: 412 VELPPEISVPLQDVKV---SRDEKASFEIELT-------KGDALVKWYKDGKEIAFSENV 461
+ V V + ++ + ++ LT GD V+W +G ++
Sbjct: 107 TISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDT 166
Query: 462 TLSIDGKKQ-----KLIIFSAGLEDAGEYSCRVG 490
+D KL + ++ E +SC V
Sbjct: 167 APVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVR 200
Score = 34.1 bits (78), Expect = 0.097
Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 23/118 (19%)
Query: 442 GDALVKWYKDGKEIA--------FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
D + W+ + E+ N T+ + L I E+ C+V
Sbjct: 43 PDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVS---TLPIQHQDWMSGKEFKCKV---N 96
Query: 494 DKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQVELS--------SP-DIQVKWL 542
+K+ + + ++ L + P V ++P + + ++S +P DI V+W
Sbjct: 97 NKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWT 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.026
Identities = 41/290 (14%), Positives = 90/290 (31%), Gaps = 104/290 (35%)
Query: 126 TEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
T G S +L + V P + + G+ K ++I +N + T G+ +
Sbjct: 1656 TYGFS-ILDI-VINNP-VNLTIHFGGE--KGKRIR--ENYSAMI---FETIVDGKLKTEK 1705
Query: 186 TNKEGTVESAANLNVDPYE-PKESKETPPSPPPYVVSELD-TLQVNTGKPEKPSILEPLH 243
KE E + + + K L T T +P++ L
Sbjct: 1706 IFKEIN-EHSTSYT---FRSEKG--------------LLSAT--QFT----QPALT--LM 1739
Query: 244 DVSITE-------------------GE-SA------VLSVQVGGEPSPKVEWYKDG-KLI 276
+ + E GE +A V+S++ +++
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-------------SLVEVV 1786
Query: 277 KDR----QITSEKNTHTLTLIQCSTKDKGRYSV------------KVTNKEGTVESAANL 320
R Q+ ++ + + GR + +V + G + N
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 321 NVD--Q----GKAE----FIKKLDDLEVKERENAVLEVEVTSDKADVKWF 360
NV+ Q G L+ +++++ + L+ ++ ++ + F
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 35.0 bits (80), Expect = 0.12
Identities = 72/448 (16%), Positives = 132/448 (29%), Gaps = 147/448 (32%)
Query: 201 DPYEPKESKETPPSPPP-------YVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESA 253
+P E + + P +P YV S ++ P K + + ++ +TE E+
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVE--------PSKVGQFDQVLNLCLTEFENC 94
Query: 254 VL------SVQVGGEPSPKVEWYKDGKLIKD----RQITSE--KNTHTLTLIQCSTKDKG 301
L ++ K +LIK+ R + L + +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 302 R-YSV--KVTNKEGTVESAANLNVDQGKAE-FIKKLDDL---------EVKERENAVLEV 348
+ ++ G QG + + ++L DL ++ + L
Sbjct: 155 QLVAIFG------G-----------QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 349 EVTSDKADVKWFKDGQEIKT-----SKK-------------------------VTIEKKG 378
+ + K F G I S VT + G
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 379 ----TIRKLLIRNISVHDEGEYT---CSLPDQETSAELNVV--------------ELPPE 417
+R L + + H +G T + D S ++V E P
Sbjct: 258 FTPGELRSYL-KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 418 ISVPLQDVKVSRDE---KAS--FEIE-LTKGDALVKWYK-------DGKEIAFS-----E 459
S+P ++ S + S I LT+ + + + GK++ S +
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 460 NVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAV--EFLTKLPSV 517
N+ +S G Q L + L A +G +S+ + FL P V
Sbjct: 376 NLVVS--GPPQSLYGLNLTLRKAK------APSGLDQSRIPFSERKLKFSNRFL---P-V 423
Query: 518 TLVP-H---LGDATFQVELSSPDIQVKW 541
P H L A+ + V +
Sbjct: 424 A-SPFHSHLLVPASDLINKDLVKNNVSF 450
Score = 33.9 bits (77), Expect = 0.26
Identities = 46/307 (14%), Positives = 89/307 (28%), Gaps = 124/307 (40%)
Query: 3 SLADILEGIPPT----F----SKKTKPVYAEENSEVTLEVRLVAVP--------EPDLLW 46
S+ DI+ P F K+ + Y+ E ++ +L +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 47 YYNGEPLQETDEVVFSDQSDMHSYVSIVTI-KSIKK--REEGVY---TVVAKNREGEAKM 100
L T F+ Q ++ + K+ + + +G+ A
Sbjct: 1720 RSEKGLLSATQ---FT-Q------PALTLMEKAAFEDLKSKGLIPADATFA--------- 1760
Query: 101 DIPVKVNTGKPEKPSILEPLHDVSITEGE-SA------VLSVQVGGEPSPKVEWYKDG-K 152
G H S+ GE +A V+S++ +
Sbjct: 1761 --------G-----------H--SL--GEYAALASLADVMSIE-------------SLVE 1784
Query: 153 LIKDR----QITSEKNTHTLTLIQCSTKDKGRYSV------------KVTNKEGTVESAA 196
++ R Q+ ++ + + GR + +V + G +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 197 NLNVDPYEPKESKETPPSPPP--YVVS----ELDTLQ--VNTGKPEKPSILEPLHDVSIT 248
N NV YV + LDT+ +N K +K I+E +S+
Sbjct: 1845 NYNV---------------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 249 EGESAVL 255
E E +
Sbjct: 1890 EVEGHLF 1896
Score = 32.7 bits (74), Expect = 0.63
Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 50/153 (32%)
Query: 353 DKADVKWFKDGQEIKTSKKVTIEKKG-TIRKLLIRN---ISVHDEGEYTCSLPDQETSAE 408
++AD + G +I ++I N +++H GE + +E +
Sbjct: 1647 NRAD--------------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI--RENYSA 1690
Query: 409 LNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSEN-----VTL 463
+ + E + + + + +E ++ T + + ++ ++ +
Sbjct: 1691 M-IFETIVDGKLKTEKIFKEINEHST---SYT-------FRSEKGLLSATQFTQPALTLM 1739
Query: 464 SI--------DGKKQKLIIFSAG--LEDAGEYS 486
G F AG L GEY+
Sbjct: 1740 EKAAFEDLKSKGLIPADATF-AGHSL---GEYA 1768
Score = 28.9 bits (64), Expect = 8.2
Identities = 6/53 (11%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 730 VN----GTVIVPSKRVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWF 778
VN V + ++ L+ +++++ + L+ ++ ++ + F
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 36.5 bits (83), Expect = 0.039
Identities = 25/194 (12%), Positives = 58/194 (29%), Gaps = 2/194 (1%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYV 71
P V + E + D +Y + + S Y+
Sbjct: 690 EPQSPTSFSVVKQSLKNAQEAEAVVQFKGNKDA-DFYEVYEKDGDSWKLLTGSSSTTIYL 748
Query: 72 SIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESA 131
V+ + + VVA + G + G K + L +I G +
Sbjct: 749 PKVSRSASAQGTTQELKVVAVGKNGVRSEAATTTFDWGMTVKDTSLPKPLAENIVPGATV 808
Query: 132 VLSVQVGGEPSPKVEWYKDGKLIK-DRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEG 190
+ S E +E +G + + +S + + ++ + ++ R+ + G
Sbjct: 809 IDSTFPKTEGGEGIEGMLNGTITSLSDKWSSAQLSGSVDIRLTKSRTVVRWVMDHAGAGG 868
Query: 191 TVESAANLNVDPYE 204
+ +N ++
Sbjct: 869 ESVNDGLMNTKDFD 882
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.0 bits (78), Expect = 0.045
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 19/115 (16%)
Query: 411 VVELPPEISVPL-QDV-----------KVSRDEKASFEIELTKGDALVKWYKDGKEIAFS 458
VV+ P ++ L V +V+ + ++ G V G + S
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 459 ENVTLSIDGKKQK-----LIIFSAGLEDAGEYSCRV--GDTGDKESKATLTVEAP 506
+ + + L +F +ED G Y+C G + L V A
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Score = 30.6 bits (69), Expect = 0.65
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 383 LLIRNISVHDEGEYTCSL---PD--QETSAELNVVELP 415
L + + V DEG YTC P + L V+ P
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 33.7 bits (77), Expect = 0.056
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 383 LLIRNISVHDEGEYTC---------SLPDQETSAELNVV 412
L + N+ + D+G Y C + + ++EL+V+
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
Score = 27.9 bits (62), Expect = 5.0
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 472 LIIFSAGLEDAGEYSCRVGDTGDKESK------ATLTVEA 505
L + + ++D G Y C + + L+V A
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 35.6 bits (82), Expect = 0.061
Identities = 51/330 (15%), Positives = 100/330 (30%), Gaps = 50/330 (15%)
Query: 104 VKVNTGKPEKPSILEPLHDVSITEGESAVLS-VQVGGEPSPK-VEWYKDGKLIKDRQITS 161
V V++ + PS+ T G +A L + P P V W +
Sbjct: 123 VIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA 182
Query: 162 EKN------THTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSP 215
++ + S+ Y V +K + + +P ++ PP P
Sbjct: 183 VLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPS--NTKVDKKAEPKSCDKTHTCPPCP 240
Query: 216 PPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGG----EPSPKVEWYK 271
P + P ++ + ++ V +P K WY
Sbjct: 241 AP-----------ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV 289
Query: 272 DGKLIKDR-QITSEKNTHT-------LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVD 323
DG + + E+ ++ LT++ + Y KV+NK ++
Sbjct: 290 DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 349
Query: 324 QGKAEFIKK------LDDLEVKERENAVLEVEVTSDK---ADVKWFKDGQEIKTSK--KV 372
+G+ + D+L + L V V+W +GQ K
Sbjct: 350 KGQPREPQVYTLPPSRDELTKNQ---VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP 406
Query: 373 TIEKKGTIRKLLIRNISVHD--EGE-YTCS 399
++ G+ + +G ++CS
Sbjct: 407 VLDSDGSFFLYSKLTVDKSRWQQGNVFSCS 436
Score = 30.2 bits (68), Expect = 2.8
Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 28/182 (15%)
Query: 63 DQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKP-------- 114
S ++S S+VT+ S Y ++ K+D + +
Sbjct: 185 QSSGLYSLSSVVTVPS-SSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPE 243
Query: 115 -------SILEPLHDVSITEGESAVLSVQVGG----EPSPKVEWYKDGKLIKDR-QITSE 162
+ P ++ + ++ V +P K WY DG + + E
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE 303
Query: 163 KNTHT-------LTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSP 215
+ ++ LT++ + Y KV+NK ++ +P+E + P
Sbjct: 304 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP 363
Query: 216 PP 217
Sbjct: 364 SR 365
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 33.6 bits (77), Expect = 0.061
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ K+ + + + + I G YSC
Sbjct: 41 MVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 33.4 bits (76), Expect = 0.066
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 17/76 (22%)
Query: 446 VKWYKD----GKEIAFSEN----------VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGD 491
V W++D GKE+ + + + +L I DA Y CRV
Sbjct: 43 VTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEV 102
Query: 492 TGDKESKAT---LTVE 504
G L VE
Sbjct: 103 LGLGVGTGNGTRLVVE 118
Score = 29.5 bits (66), Expect = 1.5
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 19/83 (22%)
Query: 335 DLEVKERENAVLEVEVTSDKAD-----VKWFKD----GQEI-----KTSKKVTIEKKGTI 380
++ E +A L + + V WF+D G+E+ + ++
Sbjct: 16 EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRF 75
Query: 381 RK-----LLIRNISVHDEGEYTC 398
L IR++ HD Y C
Sbjct: 76 LHDHQAELHIRDVRGHDASIYVC 98
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 35.0 bits (79), Expect = 0.086
Identities = 28/149 (18%), Positives = 41/149 (27%), Gaps = 30/149 (20%)
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIE 438
+ + EG Y + + EL V + P V L ++R E
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPP---KVSLMPATLARAAPGEAPPE 312
Query: 439 LT--------KGDALVKWYKDGKEIAFSENVTLSI---------DGKKQK---LIIFSAG 478
L G V+W G S+ DG L
Sbjct: 313 LLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372
Query: 479 LEDAGE-YSCRVGDTGDKE--SKATLTVE 504
E G Y+CR+ A +T+E
Sbjct: 373 TEQHGARYACRIHHPSLPASGRSAEVTLE 401
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 34.7 bits (78), Expect = 0.10
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 13/139 (9%)
Query: 329 FIKKLDDLEVKERENAVLEVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRKLLIRNI 388
++ +LD E VL + T ++ + W D E G+ + L I+
Sbjct: 9 YVVELDWYPDAPGEMVVLTCD-TPEEDGITWTLDQSS---------EVLGSGKTLTIQVK 58
Query: 389 SVHDEGEYTCSLPDQETSAELNVVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVK- 447
D G+YTC + S L ++ + +K ++ K + + +
Sbjct: 59 EFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRF 118
Query: 448 --WYKDGKEIAFSENVTLS 464
W+ + +V S
Sbjct: 119 TCWWLTTISTDLTFSVKSS 137
Score = 31.2 bits (69), Expect = 1.1
Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 20/131 (15%)
Query: 411 VVELPPEISVPLQDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
VVEL P + V ++ D T + + W D TL+I
Sbjct: 10 VVELDWYPDAPGEMVVLTCD---------TPEEDGITWTLDQSSEVLGSGKTLTIQ---- 56
Query: 471 KLIIFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
DAG+Y+C G G+ S + L + + +
Sbjct: 57 -----VKEFGDAGQYTCHKG--GEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRC 109
Query: 531 ELSSPDIQVKW 541
E + +
Sbjct: 110 EAKNYSGRFTC 120
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 9/106 (8%)
Query: 112 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
+K + L GE VL+ + W D + TLT+
Sbjct: 5 KKDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSE------VLGSGKTLTIQ 56
Query: 172 QCSTKDKGRYSVKVTNK-EGTVESAANLNVDPYEPKESKETPPSPP 216
D G+Y+ + + D + + P
Sbjct: 57 VKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPK 102
Score = 30.1 bits (66), Expect = 2.9
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 234 EKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
+K + L GE VL+ + W D + TLT+
Sbjct: 5 KKDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSE------VLGSGKTLTIQ 56
Query: 294 QCSTKDKGRYSVKVTNK 310
D G+Y+ +
Sbjct: 57 VKEFGDAGQYTCHKGGE 73
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 33.7 bits (78), Expect = 0.14
Identities = 15/66 (22%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 138 GGEPSPKVEWYKDGKLIKDRQITS-----EKNTH-----TLTLIQCSTKDKGRYSVKVTN 187
P V W DG S + TLTL Y+ KVT
Sbjct: 140 KYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVTQ 199
Query: 188 KEGTVE 193
+V
Sbjct: 200 GTTSVV 205
Score = 33.7 bits (78), Expect = 0.14
Identities = 15/66 (22%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 260 GGEPSPKVEWYKDGKLIKDRQITS-----EKNTH-----TLTLIQCSTKDKGRYSVKVTN 309
P V W DG S + TLTL Y+ KVT
Sbjct: 140 KYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVTQ 199
Query: 310 KEGTVE 315
+V
Sbjct: 200 GTTSVV 205
Score = 28.7 bits (65), Expect = 6.0
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 11/56 (19%)
Query: 443 DALVKWYKDGKEIAFSENVTLSIDGKKQK---------LIIFSAGLEDAGEYSCRV 489
D V W DG + + S + L + S EY+C+V
Sbjct: 144 DVTVTWEVDGTTQ--TTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKV 197
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.9 bits (77), Expect = 0.19
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 85 GVYTVVAKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSIT--EGESAVLSVQVGGEPS 142
G Y + R +++ T K + + P +++T +G++ +S +
Sbjct: 76 GAYFCEGRVR------GEAIRIRTMKMRQQASFLPA-TLTMTVDKGDNVNISFKKVLIKE 128
Query: 143 PKVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTN 187
YK+G I + + L +D G YS +
Sbjct: 129 EDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIG 173
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 32.3 bits (73), Expect = 0.19
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 472 LIIFSAGLEDAGEYSCRV--GDTGDKESKATLTV 503
L + +ED G Y+C G L V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 30.3 bits (68), Expect = 0.95
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 383 LLIRNISVHDEGEYTCS 399
L + ++V DEG YTC
Sbjct: 95 LALHGLTVEDEGNYTCE 111
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 34.1 bits (78), Expect = 0.21
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 82 REEGVYTVVAKNREG-EAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGE 140
++EG++ A NR G E K + V+V P KP I++ +++ V G
Sbjct: 442 QDEGIFRCQAMNRNGKETKSNYRVRVYQ-IPGKPEIVDSASELTAGVPNKVGTCVSEGSY 500
Query: 141 PSPKVEWYKDGKLI 154
P+ + W+ DGK +
Sbjct: 501 PAGTLSWHLDGKPL 514
Score = 31.8 bits (72), Expect = 1.0
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 36/186 (19%)
Query: 91 AKNREGEAKMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKD 150
N + +I ++ P E + G + KV +
Sbjct: 365 QTNAAAASAQNITARIGE-PLVLKCKGAPKKPPQRLE-----WKLNTGRTEAWKVLSPQG 418
Query: 151 GKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKE 210
G +L L +D+G + + N+ G E+ +N V Y+
Sbjct: 419 GGPWDSVARVLP--NGSLFLPAVGIQDEGIFRCQAMNRNGK-ETKSNYRVRVYQI----- 470
Query: 211 TPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPKVEWY 270
P KP I++ +++ V G P+ + W+
Sbjct: 471 ----------------------PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWH 508
Query: 271 KDGKLI 276
DGK +
Sbjct: 509 LDGKPL 514
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 31.6 bits (72), Expect = 0.23
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 448 WYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
+ K+ + + + + I G YSC
Sbjct: 41 MVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.9 bits (72), Expect = 0.23
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 383 LLIRNISVHDEGEYTCSL---PD---QETSAELNVVELPP 416
++I N+ D G +TC + PD + + L V E P
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 31.5 bits (71), Expect = 0.40
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 30/129 (23%)
Query: 411 VVELPPEISVPL-QDV------KVSRDEKASFEIELTKGDA------LVKWYKDGKEI-- 455
VV E+ + V S + Y G+
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61
Query: 456 ---AFSENVTLSIDGKKQK--LIIFSAGLEDAGEYSCRV---GDTGDKESKATLTVEAPA 507
F E + D + ++I + D G ++C V D K S+ TL V
Sbjct: 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV---- 117
Query: 508 VEFLTKLPS 516
K+P+
Sbjct: 118 ---FEKVPT 123
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 33.0 bits (75), Expect = 0.27
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Query: 42 PDLLWYYNGEPLQETDEVV--FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
L + + ++ + FS Q Y S + + +++ + +Y + R G+ +
Sbjct: 44 LKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSALELEDSAMYFCASSLRWGDEQ 102
Query: 100 MDIP-----VKVNTGKPEKPS--ILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDG 151
P V + P + EP + ++ ++ + G P ++ W+ +G
Sbjct: 103 YFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG 162
Query: 152 KLIKDRQITS-----EKNTH-----TLTLIQCS-TKDKGRYSVKVTNKEGTVE 193
K + T E N L + + + +V + E
Sbjct: 163 KEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 215
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 32.9 bits (74), Expect = 0.34
Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 20/185 (10%)
Query: 39 VPEPDLLWYYNGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEA 98
V ++W N + + + + + ++ I ++ + ++ + +
Sbjct: 38 VNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI-----QLTCNILTFGQLEQN 92
Query: 99 KMDIPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSPK----VEWYKDGKLI 154
I + PEKP L + EG+ G E + ++
Sbjct: 93 VYGITIISGL-PPEKPKNLS----CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKF 147
Query: 155 KDRQITSEKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPS 214
D + + T V+ N G V S ++N DP + P+
Sbjct: 148 ADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVY-----KVKPN 201
Query: 215 PPPYV 219
PP +
Sbjct: 202 PPHNL 206
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 32.7 bits (75), Expect = 0.34
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 226 LQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIKDRQIT- 282
+ V PS+ L P + ++ ++ + G P+ V W DG I T
Sbjct: 105 VTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTT 164
Query: 283 --SEKNTH-----TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
S+ ++ LT+ + K + + KVT+ TVE
Sbjct: 165 QPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVE 204
Score = 31.6 bits (72), Expect = 0.72
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 104 VKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIKDRQIT- 160
V V PS+ L P + ++ ++ + G P+ V W DG I T
Sbjct: 105 VTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTT 164
Query: 161 --SEKNTH-----TLTLIQCSTKDKGRYSVKVTNKEGTVE 193
S+ ++ LT+ + K + + KVT+ TVE
Sbjct: 165 QPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVE 204
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 32.7 bits (74), Expect = 0.35
Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 31/171 (18%)
Query: 351 TSDKADVKWFKDGQEIKTSKKVTIEKK--GTIR---KLLIRNISVHDEGEYTCSLPDQET 405
+ V W ++ + +++ GT + + +TC++ +E
Sbjct: 42 SDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL 101
Query: 406 SAELNVVELPPEISVPLQDVKV---SRDEKASFEIELT-------KGDALVKWYKDGKEI 455
L+ + +E + + L+ D ++W +D + +
Sbjct: 102 PLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAV 161
Query: 456 AFSENVTLSIDGKKQ----------------KLIIFSAGLEDAGEYSCRVG 490
+E VT ++ +++ K+ + +A ++C
Sbjct: 162 PATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAV 212
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 32.7 bits (74), Expect = 0.50
Identities = 33/263 (12%), Positives = 68/263 (25%), Gaps = 26/263 (9%)
Query: 130 SAVLSVQVGGEPSP----KVEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSVKV 185
S+ LS + V+ + + ++ + +G +
Sbjct: 196 SSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKAT 255
Query: 186 TNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPEKPSILEPLHDV 245
T + + KE ++ E + +P +L P
Sbjct: 256 T---APATTRNTGRGGEEKKKEKEKEEQEERETKTPEC----PSHTQPLGVYLLTPAVQD 308
Query: 246 SITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITSEKNTH---------TLTLIQC 295
++ VG + + W GK+ H LTL +
Sbjct: 309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRS 368
Query: 296 STKDKGRYSVKVTNKEGTVESAANLNVDQGKAEFIKKLDDL--EVKERENAVLEVEVTS- 352
+ + + + L +A L+ L + L EV+
Sbjct: 369 LWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGF 428
Query: 353 --DKADVKWFKDGQEIKTSKKVT 373
+ W +D +E+ TS
Sbjct: 429 SPPNILLMWLEDQREVNTSGFAP 451
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 30.4 bits (69), Expect = 0.59
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 113 KPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 171
+PS+ L P ++ G++ L + V+ + +G L D++ E++ +
Sbjct: 5 QPSLSLHP--SQGVSLGDTVTLRCH-LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFA 61
Query: 172 QCSTKDKGRYS 182
+ +D G Y
Sbjct: 62 VTNLEDAGTYQ 72
Score = 30.4 bits (69), Expect = 0.59
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 235 KPSI-LEPLHDVSITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTLTLI 293
+PS+ L P ++ G++ L + V+ + +G L D++ E++ +
Sbjct: 5 QPSLSLHP--SQGVSLGDTVTLRCH-LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFA 61
Query: 294 QCSTKDKGRYS 304
+ +D G Y
Sbjct: 62 VTNLEDAGTYQ 72
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 438 ELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQKLIIFSAGLEDAGEYSCR 488
L + A V+ + +G + + + LEDAG Y CR
Sbjct: 27 HLPRMAAWVQLWLNGT---LRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCR 74
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 31.8 bits (72), Expect = 0.68
Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 23/163 (14%)
Query: 351 TSDKADVKWFKDGQEIKTSKKVTIEKKGTIR---KLLIRNISVHDEGEYTCSLPDQETSA 407
+ W + + G L + +TC+ E+
Sbjct: 33 DASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT 92
Query: 408 ELNVVEL------PPEISV-PLQDVKVSRDEKASFEIELTK---GDALVKWYKDGKEIAF 457
L PE+ + P +++ +E + D LV+W + +E+
Sbjct: 93 PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR 152
Query: 458 SENVTLSIDGKKQK----------LIIFSAGLEDAGEYSCRVG 490
+ +T + + + L + + + +SC VG
Sbjct: 153 EKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVG 195
Score = 29.4 bits (66), Expect = 4.0
Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 27 NSEVTLEVRLVAVPEPDLLWYY----NGEPLQETDEVVFSDQSDMHSYVSIVTIKSIKKR 82
SE L L + + + + +G+ + +S S++ +
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGC--YSVSSVLPGCAEPWN 76
Query: 83 EEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEP 141
+T A E + + + + +P + L P + E L+ G
Sbjct: 77 HGKTFTCTAAYPESKTPLTATLSKSGNTF-RPEVHLLPPPSEELALNELVTLTCLARG-F 134
Query: 142 SPK---VEWYKDGKLIKDRQITSEKNTHTLTLIQCSTKDKGRYSV 183
SPK V W + + + + T Q ++ ++V
Sbjct: 135 SPKDVLVRWLQGSQEL------PREKYLTWASRQEPSQGTTTFAV 173
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.3 bits (68), Expect = 0.93
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 383 LLIRNISVHDEGEYTC----SLPDQETSAELNVVEL 414
L I + + D YTC PD ++EL
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 31.3 bits (71), Expect = 1.2
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 436 EIELTKGDALVKWYKDGKEIAFSENVTL--SIDGKKQKLIIFSAGLEDAGEYSCRV 489
IE+ K+GK+I E + S D L + Y+CRV
Sbjct: 60 HIEIQ-------MLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRV 108
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 31.2 bits (71), Expect = 1.2
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 443 DALVKWYKDGKEIAFSENVTL--SIDGKKQKLIIFSAGLEDAGEYSCRV 489
D V K+G+ I E+ L S D L + EY+CRV
Sbjct: 34 DIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRV 82
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 31.0 bits (71), Expect = 1.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 511 LTKLPSVTLVPHLGDATFQ 529
L L + ++PH+G AT +
Sbjct: 284 LLTLKNCVILPHIGSATHR 302
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 31.2 bits (71), Expect = 1.5
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 443 DALVKWYKDGKEIAFSENVTL--SIDGKKQKLIIFSAGLEDAGEYSCRV 489
D V K+G+ I E+ L S D L + EY+CRV
Sbjct: 37 DIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRV 85
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 31.3 bits (71), Expect = 1.5
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 436 EIELTKGDALVKWYKDGKEIAFSENVTL--SIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
IE+ K+GK+I E + S D L + Y+CRV
Sbjct: 57 HIEIQ-------MLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHAS 109
Query: 494 DKESKATLTVEAPAVEFLTKLPSVTLVPH 522
E K T+ + +
Sbjct: 110 MAEPK-TVYWDRDMGGGGSGGGGSGGGGS 137
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 31.0 bits (71), Expect = 1.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 511 LTKLPSVTLVPHLGDATFQ 529
L LP+ + PH+G A
Sbjct: 266 LYALPNAVITPHIGSAGRT 284
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 29.9 bits (67), Expect = 1.6
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 24/118 (20%)
Query: 412 VELPPEISVPL-QDVKVSRDEKASFEIELTKGDALVKWYKDGKEIAFSENVTLSIDGKKQ 470
+ + ++V V V + + W++ G +I++ V +
Sbjct: 10 LTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAV 69
Query: 471 K-------------------LIIFSAGLEDAGEYSCRVGDTGDK----ESKATLTVEA 505
+ L I A + DAG Y R+ K + ++ V A
Sbjct: 70 QEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTA 127
Score = 28.0 bits (62), Expect = 6.1
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 26/96 (27%)
Query: 347 EVEVTSDKADVKWFKDGQEIKTSKKVTIEKKGTIRK-------------------LLIRN 387
+ + SD WF+ G +I V + L IR+
Sbjct: 35 DSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD 94
Query: 388 ISVHDEGEYTCSL-------PDQETSAELNVVELPP 416
+ D G Y + + +NV L
Sbjct: 95 ARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTH 130
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 31.0 bits (71), Expect = 1.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 511 LTKLPSVTLVPHLGDATFQ 529
L ++ L PH+G AT +
Sbjct: 300 YRSLDNIFLTPHIGSATHE 318
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 30.6 bits (70), Expect = 1.7
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 443 DALVKWYKDGKEIAFSENVTL-----SIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
V W +DG+E+ S ++ + D Q +D Y+CRV +
Sbjct: 218 PIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDR 277
Query: 498 KATLTVEAP 506
+
Sbjct: 278 SLLVPWHHH 286
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 30.7 bits (68), Expect = 1.8
Identities = 30/249 (12%), Positives = 71/249 (28%), Gaps = 16/249 (6%)
Query: 1 ESSLADILEGIPPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQ---ETD 57
SS ++ P ++ P E + + + + + ++W +G
Sbjct: 89 TSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIW 148
Query: 58 EVVFSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKVNTGKPEKPSIL 117
+ + + + S I + V A + +
Sbjct: 149 KNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP 208
Query: 118 EPLHDVSITEGESAVLS---------VQVGGEPSPKVEWYKDGKLIKDRQITSEKNTHTL 168
P + + ++ VL QV + + + E T
Sbjct: 209 PPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQ 268
Query: 169 TLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYEPKESKETPPSPPPYVVSEL-DTLQ 227
+ + KG Y ++V +G S + + + + PP + + L D+
Sbjct: 269 CVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI---KFDTEIQAFLLPPVFNIRSLSDSFH 325
Query: 228 VNTGKPEKP 236
+ G P++
Sbjct: 326 IYIGAPKQS 334
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.5 bits (66), Expect = 1.8
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 472 LIIFSAGLEDAGEYSCRVGDTG-DKESKATLTV 503
+ I +D+G Y C +G +L V
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 30.6 bits (70), Expect = 2.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 511 LTKLPSVTLVPHLGDATF 528
LP+ L PH+G A
Sbjct: 275 YYDLPNTFLFPHIGSAAT 292
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 30.3 bits (69), Expect = 2.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 511 LTKLPSVTLVPHLGDATF 528
L ++ VTL H+G
Sbjct: 293 LIEMKHVTLTTHIGGVAI 310
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 30.2 bits (69), Expect = 2.3
Identities = 10/57 (17%), Positives = 14/57 (24%), Gaps = 11/57 (19%)
Query: 474 IFSAGLEDAGEYSCRVGDTGDKESKATLTVEAPAVEFLTKLPSVTLVPHLGDATFQV 530
+ D + E A L P+ PH+G A V
Sbjct: 255 LGGYAA-----------DVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.4
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 40/66 (60%)
Query: 375 EKKGTIRKLLIRNISVHDEGEYTCSL----PDQETSAELNVVELPPEISVPLQDVKVSRD 430
EK+ ++KL + SL D SA P +++
Sbjct: 18 EKQ-ALKKL---------QA----SLKLYADD---SA--------PALAI---------- 42
Query: 431 EKASFE 436
KA+ E
Sbjct: 43 -KATME 47
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 30.3 bits (69), Expect = 2.5
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 506 PAV-EFLTKLPSVTLVPHLGDATFQ 529
PA+ P+ L+PH G AT +
Sbjct: 289 PAIRSEFHTTPNTVLMPHQGSATVE 313
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 29.9 bits (68), Expect = 2.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 511 LTKLPSVTLVPHLGDATF 528
L KL +V L PH+G A+F
Sbjct: 277 LFKLDNVVLTPHIGSASF 294
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 28.7 bits (64), Expect = 2.9
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 29/117 (24%)
Query: 412 VELPPEISVPL-QDVKVSRDEKASFEIE---LTKGDALVKWYKDGK----EIAFSENVTL 463
V P + + + F WY D + S + L
Sbjct: 4 VSSPKNVQGLSGSCLLIP----CIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKL 59
Query: 464 SIDGKKQK-------------LIIFSAGLEDAGEYSCRVGDTGDKE----SKATLTV 503
+ + L++ ED+G Y+ R + T+TV
Sbjct: 60 VDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTV 116
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural
genomics, PSI-biology, protein structure initiative; NMR
{Thermotoga maritima}
Length = 106
Score = 28.3 bits (64), Expect = 3.2
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 327 AEFIKKLDDLEVKERENAVLEVEVTSDKADVKWF----KDGQEIKTSKKVTIEKKGTIRK 382
E +++L D +K+ VE++ DK + +E K + ++ KG R
Sbjct: 20 MEALQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILNRAKGFFRT 79
Query: 383 LLIRNISVH 391
+ +N+ ++
Sbjct: 80 FIAKNLRLY 88
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 28.7 bits (64), Expect = 3.3
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 472 LIIFSAGLEDAGEYSCRVGDTG-DKESKATLTVEAPAVEFLTKLPSVTLVP 521
+ + DA Y C + TG D +T++ + P
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPA----PVTQEETSSSP 123
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 29.5 bits (67), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 506 PAV-EFLTKLPSVTLVPHLGDATFQ 529
P V E L L +V L+PH+G T +
Sbjct: 282 PEVPEKLFGLENVVLLPHVGSGTVE 306
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 29.2 bits (66), Expect = 4.1
Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 442 GDALVKWYKDGKEIAFSENVTLSIDGKKQK------LIIFSAGLEDAGEYSCRVGDTG 493
G V W DG + T K L + + E YSC+V G
Sbjct: 145 GVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG 202
Score = 28.4 bits (64), Expect = 6.5
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 226 LQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITS 283
L V P++ L P ++ ++ ++ P V+W DG + T+
Sbjct: 106 LTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT 165
Query: 284 ----EKNTH-----TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
+ N LTL + + YS +VT++ +
Sbjct: 166 QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN 206
Score = 28.4 bits (64), Expect = 8.1
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 138 GGEPSP-KVEWYKDGKLIKDRQITS----EKNTH-----TLTLIQCSTKDKGRYSVKVTN 187
P V+W DG + T+ + N LTL + + YS +VT+
Sbjct: 141 DFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTH 200
Query: 188 KEGTVE 193
+ +
Sbjct: 201 EGHSSN 206
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 29.1 bits (65), Expect = 4.2
Identities = 20/156 (12%), Positives = 43/156 (27%), Gaps = 18/156 (11%)
Query: 178 KGRYSVKVTNKEG---TVESAANLNVDPYEPKESKETPPSPPPYVVSELDTLQVNTGKPE 234
Y ++E +E A Y + + +
Sbjct: 59 PDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQV 118
Query: 235 KP---SILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYKDGKLIKDRQITS-----EK 285
P S+ EP + ++ ++ + G P ++ W+ +GK + T E
Sbjct: 119 TPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKES 178
Query: 286 NTH-----TLTLIQCS-TKDKGRYSVKVTNKEGTVE 315
N L + + + +V + E
Sbjct: 179 NYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 214
Score = 28.0 bits (62), Expect = 9.7
Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 24/175 (13%)
Query: 42 PDLLWYYNGEPLQETDEVV--FSDQSDMHSYVSIVTIKSIKKREEGVYTVVAKNREGEAK 99
L+ Y G E ++ + S+ ++ + VY + G
Sbjct: 41 LRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSL-ILELATPSQTSVYFCASGGGRGSYA 99
Query: 100 MD---------IPVKVNTGKPEKPSILEPLHDVSITEGESAVLSVQVGGEPSP-KVEWYK 149
+ + P K S+ EP + ++ ++ + G P ++ W+
Sbjct: 100 EQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159
Query: 150 DGKLIKDRQITS-----EKNTH-----TLTLIQCS-TKDKGRYSVKVTNKEGTVE 193
+GK + T E N L + + + +V + E
Sbjct: 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 214
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 28.0 bits (62), Expect = 4.3
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 20/99 (20%)
Query: 124 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH----------------- 166
++ EG+ +L V + WYK ++ +RQI
Sbjct: 11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 70
Query: 167 --TLTLIQCSTKDKGRYSVKVTNKEGTVESA-ANLNVDP 202
+L + D G Y++ V + E A V P
Sbjct: 71 NASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP 109
Score = 28.0 bits (62), Expect = 5.2
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 246 SITEGESAVLSVQVGGEPSPKVEWYKDGKLIKDRQITSEKNTH----------------- 288
++ EG+ +L V + WYK ++ +RQI
Sbjct: 11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP 70
Query: 289 --TLTLIQCSTKDKGRYSVKVTNKEGTVESA 317
+L + D G Y++ V + E A
Sbjct: 71 NASLLIQNIIQNDAGFYTLHVIKSDLVNEEA 101
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.0 bits (62), Expect = 4.5
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 22/103 (21%)
Query: 123 VSITEGESAVLSVQV-GGEPSPKVEWYKDGKLI--------------------KDRQITS 161
V+ GES V + + W + +R I +
Sbjct: 9 VNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYER-IHA 67
Query: 162 EKNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAANLNVDPYE 204
+ L + +D G Y + + + N+ Y
Sbjct: 68 LGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYR 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 740 RVKGKAEFIKKLDDLEVKERENAVLEVEVTSDKADVKWFKN 780
R K +AE + + E++N L+ S ++++ K+
Sbjct: 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 28.3 bits (62), Expect = 4.6
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 472 LIIFSAGLEDAGEYSCRVGDTGDKESKAT 500
L + +D G Y C+V +
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRTEFGL 122
>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid,
antigen, transmembrane, disulfide bond, immune response,
immunoglobulin domain, MHC I, polymorphism; HET: UNL
NAG; 2.20A {Gallus gallus}
Length = 281
Score = 29.1 bits (66), Expect = 4.7
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 443 DALVKWYKDGKEIAFSENV----TL-SIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKES 497
V W +DG+E+ S + L + D Q +D Y+CRV +
Sbjct: 210 PIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGHGYACRVQHCSLGDR 269
Query: 498 KATLTVEAP 506
+
Sbjct: 270 SLLVPWHHH 278
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.1 bits (63), Expect = 4.9
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 472 LIIFSAGLEDAGEYSCRVGDTG-DKESKATLTV 503
+ + + DAG Y C + G D K T+ +
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 29.2 bits (66), Expect = 5.0
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 16/120 (13%)
Query: 12 PPTFSKKTKPVYAEENSEVTLEVRLVAVPEPDLLWYYNGEPLQETDEVVFS-DQSDMHSY 70
PP F++ E+ + + V + D + E + + D +
Sbjct: 212 PPKFAQSLYHFSVPEDVVLGTAIGRVKANDQD---------IGENAQSSYDIIDGDGTAL 262
Query: 71 VSIVTIKSIKKREEGVYTVVAKNREGEAKMDIPVKV-NTGKPEKPSILEPLHD---VSIT 126
I + + ++ + + E + + V+ N + S P D V I
Sbjct: 263 FEITS--DAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIV 320
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.0 bits (65), Expect = 5.4
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 13/63 (20%)
Query: 457 FSENVTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTGDKESKAT------LTVE-----A 505
+S V K L I + LED+ +Y C +G++ + K +TVE
Sbjct: 198 YS--VNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTVEPRSQHH 255
Query: 506 PAV 508
Sbjct: 256 HHH 258
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial;
SCOT, COA transferase, dynamic domain, glycerol,
mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A*
1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Length = 481
Score = 29.3 bits (66), Expect = 5.5
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 16/149 (10%)
Query: 601 SSPKKREIFDGENIILE--------LKEADSETDAGD--YKVVATNELGSATHGARVT-V 649
S P++ F+G++ ILE L +A AG+ ++ A N A T V
Sbjct: 145 SKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVV 204
Query: 650 DVEKVGRPPINSIDIDRNHVHHLDNIDSPRQSTEVDVEKPVETAPVIDPPPPPEVLVKKG 709
+VE++ + H+ I R EK +E V K G
Sbjct: 205 EVEEIVDIG----SFAPEDI-HIPKIYVHRLVKGEKYEKRIERLSVRKEEDVKTRSGKLG 259
Query: 710 EDLKIEVRFKALPPPKAEWTVNGTVIVPS 738
++++ + +A + N + +P
Sbjct: 260 DNVRERIIKRAALEFEDGMYANLGIGIPL 288
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 29.2 bits (66), Expect = 5.5
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 584 ASPAPSIVWFRN 595
A+ +++WFR+
Sbjct: 1 ATRGANVIWFRH 12
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 28.8 bits (64), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 461 VTLSIDGKKQKLIIFSAGLEDAGEYSCRVGDTG 493
+ ++ D K LI+ A L DA Y C + G
Sbjct: 61 LAIAEDRKSSTLILHRATLRDAAVYYCILPLAG 93
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 29.3 bits (66), Expect = 5.8
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 576 IRLMAKVKASPAPSIVWFRN 595
IR + K P + W
Sbjct: 26 IRALKSGKQGDGPVVYWMSR 45
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome,
unknown function; 1.69A {Clostridium thermocellum}
Length = 98
Score = 27.4 bits (61), Expect = 5.8
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 24/103 (23%)
Query: 237 SILEPLHDVSITEGESAVLSVQVGGEPSP--KVEWYKDGKLIK-------DRQITSEKNT 287
+ P +V E ++ +V++ DG++I + + + +
Sbjct: 3 KLTAPKSNVVAYGNEFLKITATASDSDGKISRVDFLVDGEVIGSDREAPYEYEWKAVEGN 62
Query: 288 HTLTLIQCSTKDKGRYSVKVTNKEG--TVESAANLNVDQGKAE 328
H ++ V + + + + + V Q + E
Sbjct: 63 HEIS-------------VIAYDDDDAASTPDSVKIFVKQARLE 92
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 27.7 bits (62), Expect = 5.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 446 VKWYKDGKEIAFSENVTLSI--DGKKQKL--IIFSAGLEDAGEYSCRV 489
V K+G+ I E+ LS D L F+ +D EY+CRV
Sbjct: 57 VDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKD--EYACRV 102
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 28.9 bits (65), Expect = 6.0
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 104 VKVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSP-KVEWYKDGKLIK------ 155
+ V PS+ + A L + P V W DG +K
Sbjct: 126 LTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT 185
Query: 156 --DRQITSE-KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 197
+Q ++ + L+L K YS +VT++ TVE
Sbjct: 186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230
Score = 28.5 bits (64), Expect = 6.4
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 226 LQVNTGKPEKPSILEPLHDVSITEGESAVLSVQV-GGEPSP-KVEWYKDGKLIK------ 277
L V PS+ + A L + P V W DG +K
Sbjct: 126 LTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT 185
Query: 278 --DRQITSE-KNTHTLTLIQCSTKDKGRYSVKVTNKEGTVESAAN 319
+Q ++ + L+L K YS +VT++ TVE
Sbjct: 186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230
>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune
response, membrane, transmembrane, GTP-binding,
methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B
1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B*
2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B
1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...
Length = 190
Score = 28.5 bits (64), Expect = 6.2
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 21/54 (38%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN------ISVHDE-----GE-YTC 398
V+WF++GQE EK G + LI N V E GE YTC
Sbjct: 129 VRWFRNGQE---------EKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTC 173
>3lqz_B HLA-DP2 beta chain linked with DRA peptide; MHC, immune, disulfide
bond, glycoprotein, immune respo membrane, MHC II,
transmembrane, immune system; HET: NAG NDG; 3.25A {Homo
sapiens}
Length = 212
Score = 28.6 bits (64), Expect = 6.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 21/54 (38%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN------ISVHDE-----GE-YTC 398
V+WF +GQE T+ V+ LIRN I V E G+ YTC
Sbjct: 150 VRWFLNGQEE-TAGVVSTN--------LIRNGDWTFQILVMLEMTPQQGDVYTC 194
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 28.4 bits (64), Expect = 7.1
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 226 LQVNTGKPEKPSI-LEPLHDVSITEGESAVLSVQVGGEPS-PKVEWYKDGKLIKD----R 279
L V G P + + P + ++ ++ + P V W +G I D
Sbjct: 104 LTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT 163
Query: 280 QITSEKNTH----TLTLIQCSTKDKGRYSVKVTNKEGTVE 315
+ + + + L+L K R S +VT++ TVE
Sbjct: 164 KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203
Score = 28.4 bits (64), Expect = 7.8
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 142 SPKVEWYKDGKLIKD----RQITSEKNTH----TLTLIQCSTKDKGRYSVKVTNKEGTVE 193
S V W +G I D + + + + L+L K R S +VT++ TVE
Sbjct: 144 SATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.7 bits (64), Expect = 7.5
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 9/67 (13%)
Query: 462 TLSIDGKKQKLIIFSAGLEDAGEYSC-RVGDTGDKESKAT------LTVEAPAVEFLTKL 514
L+ +L + A + C D + LTV
Sbjct: 66 YLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKN--VFP 123
Query: 515 PSVTLVP 521
P V +
Sbjct: 124 PEVAVFE 130
>4d8p_B Peptide from gamma-gliadin, linker, MHC class II; class II MHC,
immune system; 3.05A {Triticum aestivum}
Length = 250
Score = 28.6 bits (64), Expect = 7.9
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 21/54 (38%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN------ISVHDE-----GE-YTC 398
V+WF++ QE T+ V+ LIRN I V E G+ YTC
Sbjct: 162 VRWFRNDQEE-TAGVVSTP--------LIRNGDWTFQILVMLEMTPQRGDVYTC 206
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 27.4 bits (61), Expect = 8.0
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 446 VKWYKDGKEIAFSENVTLSIDG----KKQKLIIFSAGLEDAGEYSCRV 489
++ K+GK+I E +S F+ D Y+CRV
Sbjct: 57 IQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETD--TYACRV 102
>1iao_B MHC class II I-AD; MHC II, class II MHC, ovalbumin peptide; HET:
NAG; 2.60A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 222
Score = 28.2 bits (63), Expect = 9.8
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 21/54 (38%)
Query: 357 VKWFKDGQEIKTSKKVTIEKKGTIRKLLIRN------ISVHDE-----GE-YTC 398
V+WF++GQE E G LIRN + V E GE YTC
Sbjct: 155 VRWFRNGQE---------ETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTC 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.130 0.365
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,735,193
Number of extensions: 736236
Number of successful extensions: 5768
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3170
Number of HSP's successfully gapped: 1555
Length of query: 785
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 684
Effective length of database: 3,881,772
Effective search space: 2655132048
Effective search space used: 2655132048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.2 bits)