BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2776
(803 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 140 VDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-DDSLIKGR--NITYENNV 196
+ EAP I++ +KD + L C + G P PDIKWY+ LI+ R ++ +
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
TV+ + EG YTC ATNE G ETS LL+Q
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII 729
G+AP + ++ T K +L ++ P P I W+R K L+ S K + DG
Sbjct: 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 730 LELKEADSETDAGDYKVVATNELG 753
L + + E D G Y +ATNE+G
Sbjct: 65 LTVMTEEQE-DEGVYTCIATNEVG 87
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
++ + G P P+I W + G E+ S+ ++ D T T+ + + + D YT ATN
Sbjct: 26 QLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE 85
Query: 587 AG--STSLDLSLQ 597
G TS L LQ
Sbjct: 86 VGEVETSSKLLLQ 98
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 69/244 (28%)
Query: 365 IKRVTQDDETDIGVLA-LNVKSVSK----LKWLDFGSGGWWFESKYKDDSLIKGRN--IT 417
I++ +D T +G A L+ + V + +KW FG LI+ R ++
Sbjct: 10 IRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGK------------ELIQSRKYKMS 57
Query: 418 YENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPM 477
+ TV+ + EG YTC ATNE G ET
Sbjct: 58 SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET-------------------------- 91
Query: 478 KRVLQKLAVPFSYKTRTTNLQIQSPPQ-QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP 536
++ L +Q+ PQ P L + +V S ++ V Y G P
Sbjct: 92 ----------------SSKLLLQATPQFHPGYPLKEKYYG----AVGSTLRLHVMYIGRP 131
Query: 537 RPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR-ADTSTYTVTATNAAGSTS--LD 593
P ++W + +S+ I E + + + +V R Y V +N G+ LD
Sbjct: 132 VPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191
Query: 594 LSLQ 597
+ +Q
Sbjct: 192 VEIQ 195
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE---------LKEADSET 739
T+RL P P++ WF K L +S ENI +E +K +T
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNS---------ENITIENTEHYTHLVMKNVQRKT 170
Query: 740 DAGDYKVVATNELGS 754
AG YKV +N G+
Sbjct: 171 HAGKYKVQLSNVFGT 185
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 150 PLKDSVAG-FQSSVTLECVVSGVPTPDIKWYKDDSLIKG-RNITYEN--NVARFTVVNCS 205
PLK+ G S++ L + G P P + W+ L++ NIT EN + + N
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQ 167
Query: 206 ESSE-GRYTCKATNEAGTAETSCTLLVQGK 234
+ G+Y + +N GT + + +Q K
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 7 TLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSA----PGAPDTPEIVGRSDSSVTL 62
TLT++ E +D G YT +N +G+ ++K+ L + PG P + G S++ L
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRL 123
Query: 63 H 63
H
Sbjct: 124 H 124
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 333 PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN----VKSVSK 388
PDI KW + GKE+ +S ++ ++S G L + Q+DE +A N V++ SK
Sbjct: 37 PDI--KWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSK 94
Query: 389 L 389
L
Sbjct: 95 L 95
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-----GRNITYENNVA 197
+AP +PL+ V S+ T E +SG P P++ W++D +I G I++ + A
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK----EIKESARHIITARGTQRKL 253
+ T+ ++++ GRY+ KATN +G A ++ LLV+ + + + + +G+Q +L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 254 VIK 256
++
Sbjct: 124 QVR 126
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 49/192 (25%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
W+ + + S + G I++ + A+ T+ ++++ GRY+ KATN +G A +
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL--- 95
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
L KA+T PP +Q+L Q
Sbjct: 96 -------LVKAET--APP--NFVQRL---------------------------------Q 111
Query: 519 RLSVK--SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576
++V+ SQ +++V+ G P P + + ++GAEI S +I + + ++ I D+
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 577 STYTVTATNAAG 588
TY+V ATN+ G
Sbjct: 172 GTYSVNATNSVG 183
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P F++R + TV++ +RL +V P P + ++R+ + SS + +G+ L +
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVD 764
EA E D+G Y V ATN +G AT A + V
Sbjct: 164 AEAYPE-DSGTYSVNATNSVGRATSTAELLVQ 194
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
G+G A+ +T ++VKA + P + L+ S V L+ V+G+PTP +K+Y+D
Sbjct: 85 GSGQAT-STAELLVKA--ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDG 141
Query: 183 SLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ I+ I+ E ++ + G Y+ ATN G A ++ LLVQ
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 728
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
L + A ++ ++G Y + ATN G AT A + V E
Sbjct: 64 KLTIP-AVTKANSGRYSLKATNGSGQATSTAELLVKAE 100
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-----GRNITYENNVA 197
+AP +PL+ V S+ T E +SG P P++ W++D +I G I++ + A
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK----EIKESARHIITARGTQRKL 253
+ T+ ++++ GRY+ KATN +G A ++ LLV+ + + + + +G+Q +L
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 254 VIK 256
++
Sbjct: 124 QVR 126
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 49/204 (24%)
Query: 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458
W+ + + S + G I++ + A+ T+ ++++ GRY+ KATN +G A
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT-------- 90
Query: 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518
S L KA+T PP +Q+L Q
Sbjct: 91 --STAELLVKAET--APP--NFVQRL---------------------------------Q 111
Query: 519 RLSVK--SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576
++V+ SQ +++V+ G P P + + ++GAEI S +I + + ++ I D+
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 577 STYTVTATNAAGSTSLDLSLQVLG 600
TY+V ATN+ G + L V G
Sbjct: 172 GTYSVNATNSVGRATSTAELLVQG 195
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
G+G A+ +T ++VKA + P + L+ S V L+ V+G+PTP +K+Y+D
Sbjct: 85 GSGQAT-STAELLVKA--ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDG 141
Query: 183 SLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKE 238
+ I+ I+ E ++ + G Y+ ATN G A ++ LLVQG+ +E
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQGETREE 200
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P F++R + TV++ +RL +V P P + ++R+ + SS + +G+ L +
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
EA E D+G Y V ATN +G AT A + V E
Sbjct: 164 AEAYPE-DSGTYSVNATNSVGRATSTAELLVQGE 196
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENI 728
QAP F + + V E T A + P P + WFR+ + + +S P + F
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
L + A ++ ++G Y + ATN G AT A + V E
Sbjct: 64 KLTIP-AVTKANSGRYSLKATNGSGQATSTAELLVKAE 100
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 126/529 (23%), Positives = 194/529 (36%), Gaps = 110/529 (20%)
Query: 6 ATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP--------DTPEIVGRSD 57
A+L I K + D+G+YT N++G A A++ V ++ P D E +G
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVG-AVASSAVLVIKERKLPPSFARKLKDVHETLGFP- 118
Query: 58 SSVTLHWRPPQDDGHSP--VTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFR 115
V R +G P V+ Y KD+ + T ++ + H +
Sbjct: 119 --VAFECR---INGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173
Query: 116 VAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQ-EPLKDSVAGFQSSVTLECVVSGVPTP 174
+A N +GT +S + P P +P+ +A S T +C V+G
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVP-----PFFDLKPVSVDLA-LGESGTFKCHVTGTAPI 227
Query: 175 DIKWYKDDSLIK-GRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
I W KD+ I+ G N +T N A TV+ ++ G+YTC A+N AG S L V
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Query: 232 QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLES 291
Q E R I +KL R+ + DE + K+ W T ES
Sbjct: 288 Q-----EPPRFI-------KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335
Query: 292 TAWFWWF-ESKSTPAVEFLS---------------------------KLPSVTLVPHL-- 321
+ + F ES + + LS + P PH
Sbjct: 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE 395
Query: 322 ----GDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD---- 372
D + EL +P QV W K +E++ ++ I S + I V D
Sbjct: 396 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Query: 373 ----------ETDIGVLALNV--KSVSKLKWLDFGSGG----------------WWFESK 404
+T +G + L + V KL + G WF K
Sbjct: 456 QCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF--K 513
Query: 405 YKDDSLIKGRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451
K + + + N I+Y N+A ++ G+YTC+ NEAGT E
Sbjct: 514 DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARF 199
E P EPL+ A +TL+C V G P I WYK+ + ++ + ++NNVA
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 200 TVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKES 239
+ S G YTCKA N G +S L+++ +++ S
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS 103
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 190/499 (38%), Gaps = 108/499 (21%)
Query: 325 TFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD--------ETD 375
T Q ++ +P+I++ W K+ +++ + + + + LVI +V D E
Sbjct: 24 TLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENS 83
Query: 376 IGVLALNVKSVSKLKWL--DFGSG--------GW--WFESK-----------YKDDSLIK 412
+G +A + V K + L F G+ FE + YKD L+K
Sbjct: 84 VGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLK 143
Query: 413 ---GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469
++ +NVA ++ +S G+Y C A+N GTA + S ++L +
Sbjct: 144 DDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS---------SAKLTLSEH 194
Query: 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVE 529
+ PP F K + +L L +K
Sbjct: 195 EV---PPF----------FDLKPVSVDLA---------------------LGESGTFKCH 220
Query: 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
V G +I+W K+ EI ++ + E T+T+ + V + D YT A+N AG
Sbjct: 221 VT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 590 TSLDLSLQVL-----------GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638
S L V I++Q E + + + L Y E +S +
Sbjct: 279 DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338
Query: 639 FQVFAENSV-----GLGPEATTELVALATHATLGSPG-------QAPLFIERFEEKTVKE 686
F E+ L E + + A +A + + P+F ++ +
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK 398
Query: 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII--LELKEADSETDAGDY 744
+ L +++ +P + W ++ + L S KK +I EN + + + DS D G+Y
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSG-KKYKIM-SENFLTSIHILNVDS-ADIGEY 455
Query: 745 KVVATNELGSATHGARVTV 763
+ A+N++GS T +T+
Sbjct: 456 QCKASNDVGSDTCVGSITL 474
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E++ATLT++K D G YT SN G+ S + ++ G + P + + + S +
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL------GVQEPPRFIKKLEPSRIV 303
Query: 63 ----HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET----TSTTYEVTKLTTKHEYMF 114
H R G SP VL D+ E +K + E+ L+ + +
Sbjct: 304 KQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A NA G+ +S + + V + PV + P E LK + V LEC + G P
Sbjct: 363 TCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLKG------ADVHLECELQGTPPF 414
Query: 175 DIKWYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
+ W+KD + K I EN + ++N + G Y CKA+N+ G+
Sbjct: 415 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 82/384 (21%), Positives = 149/384 (38%), Gaps = 74/384 (19%)
Query: 406 KDDSLIK-GRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
KD+ I+ G N +T N A TV+ ++ G+YTC A+N AG
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-------------- 278
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
+ + L +Q PP + + S+ +
Sbjct: 279 ----------------------------DSCSAQLGVQEPP-----RFIKKLEPSRIVKQ 305
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
+ E K G P ++ W K+ EI +S R+ E + + +Y++ D+ YT
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 583 ATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLD-----PSTLQYTVENLRDKSEY 637
A NAAGS S SL+V + +++ + ++ K A + T + V +DK E
Sbjct: 366 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 425
Query: 638 Y----FQVFAEN-----------SVGLGPEATTELVALATHATLGS--PGQAPLFIERFE 680
+++ +EN S +G + + +GS P F+++
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLS 485
Query: 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-ILELKEADSET 739
+ + ++L A ++ + S+ WF++ ++ I ENI L+ A+
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP-A 544
Query: 740 DAGDYKVVATNELGSATHGARVTV 763
+AG Y NE G+ A ++V
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLSV 568
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
++ A N +G+ + + +KAP P + L D V L+ + G
Sbjct: 455 YQCKASNDVGSDTCVGS---ITLKAP-----PRFVKKLSDISTVVGEEVQLQATIEGAEP 506
Query: 174 PDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
+ W+KD I + I+Y N+A ++ G+YTC+ NEAGT E TL
Sbjct: 507 ISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Query: 230 LV 231
V
Sbjct: 567 SV 568
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
+ P FIE E I L KV +P I W++ + L S+P + F L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768
+ + D +D G+Y A N +G+ A + + K+
Sbjct: 64 VINKVD-HSDVGEYTCKAENSVGAVASSAVLVIKERKL 100
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 69/241 (28%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587
++ K G P I+W K ++ + A ++ +++ I V +D YT A N+
Sbjct: 25 LQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84
Query: 588 GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647
G+ + L +I++++ L PS + L+D
Sbjct: 85 GAVASSAVL-----VIKERK-----------LPPSFAR----KLKD-------------- 110
Query: 648 GLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWF 707
H TLG P + ++ S + W+
Sbjct: 111 --------------VHETLGFP--------------------VAFECRINGSEPLQVSWY 136
Query: 708 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767
++ + L + F L++ + D ++ G Y A+N LG+A+ A++T+ +
Sbjct: 137 KDGELLKDDANLQTSFIHNVATLQILQTD-QSHVGQYNCSASNPLGTASSSAKLTLSEHE 195
Query: 768 V 768
V
Sbjct: 196 V 196
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
+ LEC+ SGVPTPDI WYK + +EN + N SE G Y C A+N+ G
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG 299
Query: 222 TAETSCTLLVQGKEI-KESARHIITARGTQRKLVIK 256
+ + ++ V+ + +++I A G +LV +
Sbjct: 300 SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIR---LMAKVKAS--PAPSIVWFRNNKPLL 714
L T G + P F+ + + T + +R L+ + AS P P I W++ L
Sbjct: 207 LKVLTTRGVAERTPSFM--YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL- 263
Query: 715 SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
P + F+ N L + SE D+G+Y +A+N++GS H V V
Sbjct: 264 --PSDKAKFENFNKALRITNV-SEEDSGEYFCLASNKMGSIRHTISVRV 309
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 487 PFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG 546
PF+ K TT + + P+ SQ + +E G P P+I+W K G
Sbjct: 204 PFTLKVLTTRGVAE---RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKG 260
Query: 547 AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
++ KA + + I +V D+ Y A+N GS +S++V
Sbjct: 261 GDLPSDKA---KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVAR------- 198
+ ++ KD + + ++ +EC G P P W ++ NI + V+
Sbjct: 19 ITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFF---NIAKDPRVSMRRRSGTL 75
Query: 199 ---FTVVNCSESSEGRYTCKATNEAGTA 223
F E EG Y C A N+ GTA
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTA 103
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 691 RLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVA 748
RL+ + +P P++ W N +PL S+P RE+ G+ II + S Y+
Sbjct: 331 RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-AGDTIIFRDTQISSR---AVYQCNT 386
Query: 749 TNELGSATHGARVTV 763
+NE G A V+V
Sbjct: 387 SNEHGYLLANAFVSV 401
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSSPKKREIFDGENIILELKEAD- 736
++ V + I + + K +PAPS W RN++ + P+ ++++ +
Sbjct: 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR 84
Query: 737 SETDAGDYKVVATNELGSATHGARVTVDVEK 767
E G+Y+ A N+ G+A R+ + V K
Sbjct: 85 PEEYEGEYQCFARNKFGTALSN-RIRLQVSK 114
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK---DEFMVWNKI 94
+ ++ PG P +I +V L W PP+DDG++ +TGY ++ DK + F V
Sbjct: 12 IQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHY 71
Query: 95 ETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
TS T +T+L +EY FRV + N G
Sbjct: 72 HRTSAT--ITELVIGNEYYFRVFSENMCG 98
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 593 DLSLQVLGYIIQQQEKNSLK-FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
D + + GY IQ+ +K S++ FT + ++ T+ L +EYYF+VF+EN GL
Sbjct: 44 DGNAAITGYTIQKADKKSMEWFTVIEHYHRTSA--TITELVIGNEYYFRVFSENMCGLSE 101
Query: 652 EAT 654
+AT
Sbjct: 102 DAT 104
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 132 RYVVVKAPVDAE--APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGR 188
R+ VV+ E AP I L++ S+ + C SG P P I W+KD+ +L++
Sbjct: 652 RHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS 711
Query: 189 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
I ++ T+ + EG YTC+A + G A+ +++G + K
Sbjct: 712 GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYT 580
+V + ++ KY G+P PEI W KNG + + + + I V DT YT
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYT 397
Query: 581 VTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611
V TN + ++ Y+ Q + SL
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSL 428
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 735
+E E TV E+ +R+ AK P P I W++N PL S+ I G +L + E
Sbjct: 336 MESLVEATVGER--VRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGH--VLTIMEV 388
Query: 736 DSETDAGDYKVVATNEL 752
SE D G+Y V+ TN +
Sbjct: 389 -SERDTGNYTVILTNPI 404
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 511 VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS 570
+ NL++Q S+ +V G P P+I W K+ + + I + + + I
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRR 726
Query: 571 VVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFT 614
V + D YT A + G ++ + G QEK +L+ T
Sbjct: 727 VRKEDEGLYTCQACSVLGCAKVEAFFIIEG----AQEKTNLERT 766
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLT 723
Query: 732 LKEADSETDAGDYKVVATNELGSA 755
++ E D G Y A + LG A
Sbjct: 724 IRRVRKE-DEGLYTCQACSVLGCA 746
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 170 GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
G P P+IKWYK+ ++ + +V T++ SE G YT TN
Sbjct: 356 GYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTN 402
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E++ATLT++K D G YT SN G+ S + ++ G + P + + + S +
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL------GVQEPPRFIKKLEPSRIV 111
Query: 63 ----HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET----TSTTYEVTKLTTKHEYMF 114
H R G SP VL D+ E +K + E+ L+ + +
Sbjct: 112 KQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A NA G+ +S + + V + PV + P E LK + V LEC + G P
Sbjct: 171 TCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLKG------ADVHLECELQGTPPF 222
Query: 175 DIKWYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
+ W+KD + K I EN + ++N + G Y CKA+N+ G+
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 28/250 (11%)
Query: 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+I+W K+ EI ++ + E T+T+ + V + D YT A+N AG S L V
Sbjct: 36 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Query: 599 L-----------GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647
I++Q E + + + L Y E +S + F E+
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 648 -----GLGPEATTELVALATHATLGSPG-------QAPLFIERFEEKTVKEKGTIRLMAK 695
L E + + A +A + + P+F ++ + + L +
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENII--LELKEADSETDAGDYKVVATNELG 753
++ +P + W ++ + L S KK +I EN + + + DS D G+Y+ A+N++G
Sbjct: 216 LQGTPPFQVSWHKDKRELRSG-KKYKIMS-ENFLTSIHILNVDS-ADIGEYQCKASNDVG 272
Query: 754 SATHGARVTV 763
S T +T+
Sbjct: 273 SYTCVGSITL 282
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 95/255 (37%), Gaps = 53/255 (20%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK-GRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
S T +C V+G I W KD+ I+ G N +T N A TV+ ++ G+YTC A+
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 218 NEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277
N AG S L VQ E R I +KL R+ + DE +
Sbjct: 82 NVAGKDSCSAQLGVQ-----EPPRFI-------KKLEPSRIVKQDEHTRYECKIGGSPEI 129
Query: 278 KLKWLARWTSDLESTAWFWWF-ESKSTPAVEFLS-------------------------- 310
K+ W T ES+ + F ES + + LS
Sbjct: 130 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
Query: 311 -KLPSVTLVPHL------GDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRK 362
+ P PH D + EL +P QV W K +E++ ++ I S
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 363 LVIKRVTQDDETDIG 377
+ I V D DIG
Sbjct: 250 IHILNV---DSADIG 261
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 50/196 (25%)
Query: 406 KDDSLIK-GRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
KD+ I+ G N +T N A TV+ ++ G+YTC A+N AG
Sbjct: 41 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-------------- 86
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
+ + L +Q PP + + S+ +
Sbjct: 87 ----------------------------DSCSAQLGVQEPP-----RFIKKLEPSRIVKQ 113
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
+ E K G P ++ W K+ EI +S R+ E + + +Y++ D+ YT
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 583 ATNAAGSTSLDLSLQV 598
A NAAGS S SL+V
Sbjct: 174 AHNAAGSASSSTSLKV 189
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587
+E + G P ++SW K+ E+ K +I + ++I I +V AD Y A+N
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 588 GS 589
GS
Sbjct: 272 GS 273
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S + F L V G F VEL+ P ++VKW K G+EI+ S ++I +G
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389
QR L I D+++ V A + K ++L
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGDEKCSTEL 91
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVV 202
AP I L++ S+ + C SG P P I W+KD+ +L++ I ++ T+
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 69
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIK 237
+ EG YTC+A + G A+ +++G + K
Sbjct: 70 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 511 VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS 570
+ NL++Q S+ +V G P P+I W K+ + + I + + + I
Sbjct: 13 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRR 70
Query: 571 VVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLK 612
V + D YT A + G ++ + G QEK +L+
Sbjct: 71 VRKEDEGLYTCQACSVLGCAKVEAFFIIEGA----QEKTNLE 108
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP E +T +I + +P P I+WF++N+ L+ + N L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLT 67
Query: 732 LKEADSETDAGDYKVVATNELGSA 755
++ E D G Y A + LG A
Sbjct: 68 IRRVRKE-DEGLYTCQACSVLGCA 90
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTL 62
E++ATLT++K D G YT SN G+ S + ++ G P + + + S +
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL------GVQAPPRFIKKLEPSRIV 111
Query: 63 ----HWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET----TSTTYEVTKLTTKHEYMF 114
H R G SP VL D+ E +K + E+ L+ + +
Sbjct: 112 KQDEHTRYECKIGGSPEIK-VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
A NA G+ +S + + V + PV + P E LK + V LEC + G P
Sbjct: 171 TCEAHNAAGSASSSTSLK--VKEPPVFRKKPHPVETLKG------ADVHLECELQGTPPF 222
Query: 175 DIKWYKDDSLI---KGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222
+ W+KD + K I EN + ++N + G Y CKA+N+ G+
Sbjct: 223 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 273
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 28/250 (11%)
Query: 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+I+W K+ EI ++ + E T+T+ + V + D YT A+N AG S L V
Sbjct: 36 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Query: 599 LG-----------YIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647
I++Q E + + + L Y E +S + F E+
Sbjct: 96 QAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 648 -----GLGPEATTELVALATHATLGSPG-------QAPLFIERFEEKTVKEKGTIRLMAK 695
L E + + A +A + + P+F ++ + + L +
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 696 VKASPAPSIVWFRNNKPLLSSPKKREIFDGENII--LELKEADSETDAGDYKVVATNELG 753
++ +P + W ++ + L S KK +I EN + + + DS D G+Y+ A+N++G
Sbjct: 216 LQGTPPFQVSWHKDKRELRSG-KKYKIMS-ENFLTSIHILNVDS-ADIGEYQCKASNDVG 272
Query: 754 SATHGARVTV 763
S T +T+
Sbjct: 273 SYTCVGSITL 282
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK-GRN--ITYENNVARFTVVNCSESSEGRYTCKAT 217
S T +C V+G I W KD+ I+ G N +T N A TV+ ++ G+YTC A+
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 218 NEAGTAETSCTLLVQG--KEIK--ESARHIITARGTQRKLV------IKRVTQDDETDIG 267
N AG S L VQ + IK E +R + T+ + IK + DET+I
Sbjct: 82 NVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 141
Query: 268 VLA-LNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKL-----PSVTLVPHL 321
+ + V + L + +E + + + + + L P PH
Sbjct: 142 ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP 201
Query: 322 ------GDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDET 374
D + EL +P QV W K +E++ ++ I S + I V D
Sbjct: 202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV---DSA 258
Query: 375 DIG 377
DIG
Sbjct: 259 DIG 261
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 406 KDDSLIK-GRN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462
KD+ I+ G N +T N A TV+ ++ G+YTC A+N AG
Sbjct: 41 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-------------- 86
Query: 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522
+ + L +Q+PP + + S+ +
Sbjct: 87 ----------------------------DSCSAQLGVQAPP-----RFIKKLEPSRIVKQ 113
Query: 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582
+ E K G P ++ W K+ EI +S R+ E + + +Y++ D+ YT
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 583 ATNAAGSTSLDLSLQV 598
A NAAGS S SL+V
Sbjct: 174 AHNAAGSASSSTSLKV 189
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587
+E + G P ++SW K+ E+ K +I + ++I I +V AD Y A+N
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 588 GS 589
GS
Sbjct: 272 GS 273
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFT 200
+APVI PL+ A + T C V P P+I W ++ LIK + Y N T
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLL 230
+++ +S +G Y C A N G A SC L
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGAL 95
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 164 LECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223
L C G P P + W K DS ++ + + N + G+Y C A N GTA
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 535 FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
+P+PEISW +N I R I E + I SV +D Y TA N G
Sbjct: 34 YPQPEISWTRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
G P+P +SW+K + + ++ + E+ ++ I++V + D Y A N+ G+
Sbjct: 125 MGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVAKNSLGT 178
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 698 ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATH 757
+P PS+ W + + L + + + G L + E DAG Y+ VA N LG+A +
Sbjct: 126 GNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKE-DAGQYRCVAKNSLGTA-Y 180
Query: 758 GARVTVDVE 766
V ++VE
Sbjct: 181 SKLVKLEVE 189
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 671 QAPLFIERFE--EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI 728
+AP+ E + V+E T M V++ P P I W RN + + I + +
Sbjct: 6 KAPVITTPLETVDALVEEVAT--FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 729 ILELKEADSETDAGDYKVVATNELGSATH--GARVTVDVEKVGRPSIN 774
+ L DS D G Y A N +G A GA K+ RP IN
Sbjct: 64 LTILSVEDS--DDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPIN 109
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 56 SDSSVTLHWRPPQDDGHSPVTGYVLES--HDKDEFMVWNKIETTSTTYEVTKLTTKHEYM 113
+D++VT+ WRPP G + + GYVLE ++++V NK T + +T L T +
Sbjct: 20 TDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIF 79
Query: 114 FRVAAVNAIGTGPASHNTRYVVVK 137
RV AVNA G + ++ ++VK
Sbjct: 80 VRVKAVNAAGASEPKYYSQPILVK 103
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 14 EDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHS 73
E KD G Y + N G T ++ + P P ++ S SV L W P DG S
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGS 228
Query: 74 PVTGYVLESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIG 123
+T Y++E W ++ + T Y V L K Y FRV A N G
Sbjct: 229 KITNYIVEKCATTAER-WLRVGQARETRYTVINLFGKTSYQFRVIAENKFG 278
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
A AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP F E V+ + L+ KV P P + W+R K +++ K I + + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 732 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 765
L A ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE-ITDSKACRIF-IDEETSTIAIYSVV 572
L++ + +S + K G P+P + W + G E I D RI + I SV
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQV 598
D + Y V ATN GS S SL+V
Sbjct: 71 DDDATVYQVRATNQGGSVSGTASLEV 96
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 38/158 (24%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTSTYTVTATNA 586
+++ + G P P I+W K I ++ ++ + TS + V R D Y V A N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 587 AG----STSLDLS-------------------------------LQVLGYIIQQQEKNSL 611
G + LD++ ++ YI+++ +
Sbjct: 184 FGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE 243
Query: 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649
++ +V + +YTV NL K+ Y F+V AEN GL
Sbjct: 244 RWLRVGQARET--RYTVINLFGKTSYQFRVIAENKFGL 279
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 333 PDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382
P VKW ++GKEI I +G +L+I VT DD T V A N
Sbjct: 32 PKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 164 LECVVSGVPTPDIKWYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
++C VSG+PTPD+ W D ++ + + EN V + + G YTC ATN
Sbjct: 29 MDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR 88
Query: 220 AGTAETSCTLLVQGKE 235
AG S L+V KE
Sbjct: 89 AGQNSFSLELVVAAKE 104
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 46/106 (43%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE 726
GS G P F++ + TV+E R+ KV P P + W + KP+ + +
Sbjct: 4 GSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 727 NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
+ + E + DAG Y +ATN G + + V ++ G S
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTSTYTVTATN 585
+++ K G P P++SW +G + A ++ + E ++ I V D YT ATN
Sbjct: 28 RMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN 87
Query: 586 AAGSTSLDLSLQV 598
AG S L L V
Sbjct: 88 RAGQNSFSLELVV 100
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 100/245 (40%), Gaps = 23/245 (9%)
Query: 2 EEDSATLTIVKFEDKDLGDYTISLSNALG-QASATTKVTL---LSAPGAPDTPEIVGRSD 57
++DS+TLTI D G Y ++ G Q+ AT V + L AP TP+ +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP-TPQEFKEGE 116
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIE--TTSTTY-EVTKLTTKHEYMF 114
+V + D S + ++ H + ++ + S Y ++ + E +
Sbjct: 117 DAVIVC------DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTY 170
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP 174
R + G + V+V P +A ++ + ++ A SVTL C G P P
Sbjct: 171 RCEG-RILARGEINFKDIQVIVNVPPTVQA---RQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 175 DIKWYKDDSLIKGRNITYENNV-----ARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229
+ W KD I+ E ++ + T+ N ++ E Y C A N+AG + S L
Sbjct: 227 TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Query: 230 LVQGK 234
V K
Sbjct: 287 KVFAK 291
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 534 GFPRPEISWMKNGAEITDSK---ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590
GFP P +SW K+G I + + IF D ++S + I +V + D + Y A N AG
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSD-DSSELTIRNVDKNDEAEYVCIAENKAGEQ 280
Query: 591 SLDLSLQVLG 600
+ L+V
Sbjct: 281 DASIHLKVFA 290
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR--- 720
A L Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 721 EIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
+ DG + E D G+Y VA N +G A
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNITYENNVA 197
++P I E D V TL C V G P P I+W+KD + K + +++
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 198 RF--TVVNCSESSEGRYTCKATNEAGTA 223
F T+ E G Y C A N G A
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 605 QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664
+++ + ++F A T+Q E +D EY+ A+N VG A++ HA
Sbjct: 54 EKKSHRVQFKDGALFFYRTMQGKKE--QDGGEYW--CVAKNRVGQ---------AVSRHA 100
Query: 665 TLGSPGQAPLFIERFE---EKTVKEKGTIRLM--AKVKASPAPSIVWFRNNKPL------ 713
+L Q + + F + T KG L+ K P P+++W ++ PL
Sbjct: 101 SL----QIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAM 156
Query: 714 -LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
+ + I DG N+++ E D G+YK +A N +G+
Sbjct: 157 SFGASSRVRIVDGGNLLISNVEP---IDEGNYKCIAQNLVGT 195
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 152 KDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV-------- 202
KD+ + LEC G+P P + W KD + +R +V
Sbjct: 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175
Query: 203 NCSESSEGRYTCKATNEAGTAETS-CTLLVQGK 234
N EG Y C A N GT E+S L+VQ K
Sbjct: 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR--- 720
A L Q+P IE + VK+ L KV+ P P+I WF++ +P+ ++ KK
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 721 EIFDGENIILELKEADSETDAGDYKVVATNELGSA 755
+ DG + E D G+Y VA N +G A
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI-----KGRNITYENNVA 197
++P I E D V TL C V G P P I+W+KD + K + +++
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 198 RF--TVVNCSESSEGRYTCKATNEAGTA 223
F T+ E G Y C A N G A
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 605 QQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664
+++ + ++F A T+Q E +D EY+ A+N VG A++ HA
Sbjct: 54 EKKSHRVQFKDGALFFYRTMQGKKE--QDGGEYW--CVAKNRVGQ---------AVSRHA 100
Query: 665 TLGSPGQAPLFIERFE---EKTVKEKGTIRLM--AKVKASPAPSIVWFRNNKPL------ 713
+L Q + + F + T KG L+ K P P+++W ++ PL
Sbjct: 101 SL----QIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAM 156
Query: 714 -LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
+ + I DG N+++ E D G+YK +A N +G+
Sbjct: 157 SFGASSRVRIVDGGNLLISNVEP---IDEGNYKCIAQNLVGT 195
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 152 KDSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV-------- 202
KD+ + LEC G+P P + W KD + +R +V
Sbjct: 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175
Query: 203 NCSESSEGRYTCKATNEAGTAETS-CTLLVQGK 234
N EG Y C A N GT E+S L+VQ K
Sbjct: 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE--NI 728
+AP+FI + + K V E +++L ++ A P P + W RNN+ + + + ++ +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L +K+ + + DAG Y V A NE G T R+ V
Sbjct: 74 TLLIKDVNKK-DAGWYTVSAVNEAGVTTCNTRLDV 107
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVV--NCSESSEGRYTCK 215
SV LEC +S +P P + W +++ +++ R Y++N R T++ + ++ G YT
Sbjct: 32 SVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
Query: 216 ATNEAGTAETSC 227
A NEAG T+C
Sbjct: 92 AVNEAGV--TTC 101
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
+ EC VSG P P + W K+ ++ + + ++ +S EG Y C A NEAG
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAG 389
Query: 222 TAETSCTLLV 231
A++S L+V
Sbjct: 390 NAQSSAQLIV 399
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
E++G D T+HW+ Q D +P+ G D +V S ++++L
Sbjct: 144 EVIG--DPMPTIHWQKNQQD-LNPIPG--------DSRVV----VLPSGALQISRLQPGD 188
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
++R +A N T + ++ + + +Q P + +A LEC VSG
Sbjct: 189 SGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRP-SNVIAIEGKDAVLECCVSG 247
Query: 171 VPTPDIKWYKDDSLIKGRNITYE-NNVARFTVVNCSESSEGRYTCKAT--NEAGTAETSC 227
P P W + + +I+ R+ Y + + N ++ G YTC T NE +A
Sbjct: 248 YPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Query: 228 TLLV 231
T+LV
Sbjct: 308 TVLV 311
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586
+ E G P P ++WMKNG + S +I S + I VV++D Y A N
Sbjct: 331 EFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENE 387
Query: 587 AGS 589
AG+
Sbjct: 388 AGN 390
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENI-ILE 731
P F+ E I V P P++ W +N ++ S +I G N+ IL
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS-DYFQIVGGSNLRILG 371
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ ++D G Y+ VA NE G+A A++ V
Sbjct: 372 V----VKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 91/239 (38%), Gaps = 28/239 (11%)
Query: 537 RPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596
+P+ + A + DS + I T+ + + +R + T ++TA G T L L
Sbjct: 91 KPDEGLYQCEASLGDSGS----IISRTAKVMVAGPLRFLSQTESITAF--MGDTVL-LKC 143
Query: 597 QVLGYII-------QQQEKNSLKF-TKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
+V+G + QQ+ N + ++V L LQ + D Y S
Sbjct: 144 EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTR 203
Query: 649 LGPEATTELVALATHATLGSPG--QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVW 706
G EA + L PG + F++R E L V P PS W
Sbjct: 204 TGNEAEVRI--------LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 707 FRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765
R + + KK + G N+++ D D+G Y V T + + + A +TV V
Sbjct: 256 LRGEEVIQLRSKKYSLLGGSNLLISNVTDD---DSGTYTCVVTYKNENISASAELTVLV 311
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 153 DSVAGFQS-SVTLECVVSGVPTPDIKWYK---DDSLIKGRNITYENNVARFTVVNCSESS 208
+S+ F +V L+C V G P P I W K D + I G + +
Sbjct: 129 ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGD 188
Query: 209 EGRYTCKATNEAGT 222
G Y C A N A T
Sbjct: 189 SGVYRCSARNPAST 202
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITY-ENNVARFTVVNCSESSEGRYTCK 215
S+ +C V G P P++ W+KDD+ +K I Y E T+ + +YTCK
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 216 ATNEAGTAETSCTLLVQ 232
A N G A + LLV+
Sbjct: 117 AVNSLGEATCTAELLVE 133
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-N 727
P P F + + V E R KV+ P P ++WF+++ P+ S + +D E N
Sbjct: 38 PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + E + DA Y A N LG AT A + V+
Sbjct: 98 CSLTISEVCGDDDA-KYTCKAVNSLGEATCTAELLVE 133
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTSTYTVT 582
S + + K G+P PE+ W K+ + +S+ +I DEE ++ I V D + YT
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 583 ATNAAGSTSLDLSLQV 598
A N+ G + L V
Sbjct: 117 AVNSLGEATCTAELLV 132
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITY-ENNVARFTVVNCSESSEGRYTCK 215
S+ +C V G P P++ W+KDD+ +K I Y E T+ + +YTCK
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 216 ATNEAGTAETSCTLLVQ 232
A N G A + LLV+
Sbjct: 117 AVNSLGEATCTAELLVE 133
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE-N 727
P P F + + V E R KV+ P P ++WF+++ P+ S + +D E N
Sbjct: 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764
L + E + DA Y A N LG AT A + V+
Sbjct: 98 CSLTISEVCGDDDA-KYTCKAVNSLGEATCTAELLVE 133
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE-TSTIAIYSVVRADTSTYTVT 582
S + + K G+P PE+ W K+ + +S+ +I DEE ++ I V D + YT
Sbjct: 57 SAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 583 ATNAAGSTSLDLSLQV 598
A N+ G + L V
Sbjct: 117 AVNSLGEATCTAELLV 132
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEF 88
G + A TL P P+ P I R+ +S+TL W+ P D+G S + +VLE K
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNG-SKIQNFVLEWDEGKGNG 62
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRY 133
+ +++TKL+ FR++A N GT S Y
Sbjct: 63 EFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLY 107
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNV 196
A AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 197 ARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP F E V+ + L+ KV P P + W+R K +++ K I + + +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 732 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 765
L A ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE-ITDSKACRIF-IDEETSTIAIYSVV 572
L++ + +S + K G P+P + W + G E I D RI + I SV
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQV 598
D + Y V ATN GS S SL+V
Sbjct: 71 DDDATVYQVRATNQGGSVSGTASLEV 96
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 331 SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382
P VKW ++GKEI I +G +L+I VT DD T V A N
Sbjct: 30 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 145 PVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFT 200
P I P K ++ A +T C SG P P I W+++ LI+ N Y + + T
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELT 61
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
V N S G Y C+ATN+AG E L V
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW +NG I +++ + + + + + +++ +D Y ATN AG
Sbjct: 30 GSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 87
Query: 594 LSLQVL--GYIIQ 604
LQV +IIQ
Sbjct: 88 AFLQVFVQPHIIQ 100
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736
ER EE T + SP P+I WFRN K L ++ I G N L ++
Sbjct: 17 ERGEEMT--------FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVRNII 66
Query: 737 SETDAGDYKVVATNELGSATHGARVTVDVE 766
+ +D G Y ATN+ G A + V V+
Sbjct: 67 N-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK---------DDSLIKGR-NITYENN 195
+IQ LK+ VTL C G P P+I W + D + GR + ++
Sbjct: 98 IIQ--LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 155
Query: 196 VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + + S GRY C+A + G + S L ++
Sbjct: 156 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 323 DATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
+ TF S SP+ + W + GK I+E+ ++I+ +G+ +L ++ + D
Sbjct: 21 EMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSD 69
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 134 VVVKAPVDAEAPVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNI 190
V+V P P I P K ++ A +T C SG P P I W+++ LI+
Sbjct: 91 VIVNVP-----PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 145
Query: 191 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + TV N S G Y C+ATN+AG E L V
Sbjct: 146 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW +NG I +++ + + + + + +++ +D Y ATN AG
Sbjct: 124 GSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 594 LSLQVL 599
LQV
Sbjct: 182 AFLQVF 187
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736
ER EE T + SP P+I WFRN K L ++ I G N L ++
Sbjct: 111 ERGEEMT--------FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVRNII 160
Query: 737 SETDAGDYKVVATNELGSATHGARVTVDVE 766
+ +D G Y ATN+ G A + V V+
Sbjct: 161 N-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 323 DATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
+ TF S SP+ + W + GK I+E+ ++I+ +G+ +L ++ + D
Sbjct: 115 EMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSD 163
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNVAR 198
AP +E L++ +QS+ TL C V+G P P +KWY+ I + Y + +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + ++ Y +ATN+ G+ + +L V+
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 95
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP F E V+ + L+ KV P P + W+R K +++ K I + + +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 732 LKEAD-SETDAGDYKVVATNELGSATHGARVTVDV 765
L A ++ DA Y+V ATN+ GS + A + V+V
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV 96
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE-ITDSKACRIF-IDEETSTIAIYSVV 572
L++ + +S + K G P+P + W + G E I D RI + I SV
Sbjct: 9 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 68
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQV 598
D + Y V ATN GS S SL+V
Sbjct: 69 DDDATVYQVRATNQGGSVSGTASLEV 94
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 331 SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382
P VKW ++GKEI I +G +L+I VT DD T V A N
Sbjct: 28 GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 81
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 134 VVVKAPVDAEAPVIQEPLK--DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-GRNI 190
V+V P P I P K ++ A +T C SG P P I W+++ LI+
Sbjct: 187 VIVNVP-----PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241
Query: 191 TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + TV N S G Y C+ATN+AG E L V
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ISW +NG I +++ + + + + + +++ +D Y ATN AG
Sbjct: 220 GSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 277
Query: 594 LSLQVL 599
LQV
Sbjct: 278 AFLQVF 283
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736
ER EE T + SP P+I WFRN K L ++ I G N L ++
Sbjct: 207 ERGEEMT--------FSCRASGSPEPAISWFRNGK--LIEENEKYILKGSNTELTVRNII 256
Query: 737 SETDAGDYKVVATNELGSATHGARVTVDVE 766
+ +D G Y ATN+ G A + V V+
Sbjct: 257 N-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 323 DATFQVELS-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
+ TF S SP+ + W + GK I+E+ ++I+ +G+ +L ++ + D
Sbjct: 211 EMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRNIINSD 259
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 109/274 (39%), Gaps = 47/274 (17%)
Query: 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN---- 585
+Y G P +SWMK+G I S+ S + I SV + D Y N
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRES 414
Query: 586 AAGSTSLDLSLQVLGYIIQQ--QEKN-----SLKFTKVATLDPS---------------- 622
A S L L + +I+Q QE+ S+ VA +P+
Sbjct: 415 AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Query: 623 ---TLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679
QY N S N GL V +A H+ + P +I +
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQM 533
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
E+K + T+ + V P SIVW R+N+ L + +K+++F +I+E E +S
Sbjct: 534 EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN-RKQKVFPNGTLIIENVERNS-- 590
Query: 740 DAGDYKVVATNELGSATHGARVTVDVEKVGRPSI 773
D Y VA N+ G + AR +++V+ + P I
Sbjct: 591 DQATYTCVAKNQEG---YSARGSLEVQVMVLPRI 621
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK-------GRNITYENN 195
+ PVI++ ++ SV L+CV G PTP+I W D I G+ +T +
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 196 VARFTVVNCSESSEGR-YTCKATNEAGTAETSCTLLVQG 233
V + + +++G Y C A ++ G AE S L V G
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 109/276 (39%), Gaps = 47/276 (17%)
Query: 534 GFPRPEISWMKNGAEITDSKACRI--FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
G+P P W K T +A + + + + T+ I V D+ Y N+ G S
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333
Query: 592 LDLSLQVLGYIIQQQEK--NSLKFTKVATLDPSTLQYT---------------------- 627
++ L V + + + ++ F + A T QYT
Sbjct: 334 VETVLTVTAPLSAKIDPPTQTVDFGRPAVF---TCQYTGNPIKTVSWMKDGKAIGHSESV 390
Query: 628 --VENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVK 685
+E+++ + + +Q F N EA+ EL LG P+ + F+E+T++
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRE-SAEASAEL-------KLGGRFDPPVIRQAFQEETME 442
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK----KREIFDGENIILELKEADSETDA 741
++ L +P P I W + K + ++ + + +G+ + + D
Sbjct: 443 PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDG 502
Query: 742 GDYKVVATNELGSATHGARVTVDVEKVGRPSINSID 777
G YK +A +++G A H A++ V G P I ++
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNV----YGLPYIRQME 534
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 160 SSVTLECVVSGVPTPDIKW----------YKDDSLIKGRNITYENNVARFTVVNCSESSE 209
S +EC G P P + W YKD L K NI E V N +++E
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKD--LKKSDNIRVEEGT--LHVDNIQKTNE 785
Query: 210 GRYTCKATNEAGTAETSCTLL 230
G Y C+A N G+ ++ ++
Sbjct: 786 GYYLCEAINGIGSGLSAVIMI 806
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 524 SQWKVEVKYFGFPRPEISWMK----NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579
S KVE K GFP+P+++W K E D K I E T+ + ++ + + Y
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSD-NIRVEEGTLHVDNIQKTNEGYY 788
Query: 580 TVTATNAAGS 589
A N GS
Sbjct: 789 LCEAINGIGS 798
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 653 ATTELVALATHATLGSPGQA----PLFIERFEEKTVKEKGT-IRLMAKVKASPAPSIVWF 707
A L+A + +P A P+F++ + T + K +P P I+W
Sbjct: 15 AAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWI 74
Query: 708 RNNKPLLSS-PKKREI-FDGENIILELKEAD--SETDAGDYKVVATNELGS 754
R++ + P R+I DG+ + + D E A Y +A N+ GS
Sbjct: 75 RSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGS 125
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 32 ASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDK-DEFMV 90
+S T + P P E+ + D SV L W P DD +SP+T +++E D + +
Sbjct: 5 SSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTP-GDDNNSPITKFIIEYEDAMHKPGL 63
Query: 91 WN---KIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI 147
W+ ++ T TT ++ L+ Y FRV AVN+IG S + + KA
Sbjct: 64 WHHQTEVSGTQTTAQL-NLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA--------- 113
Query: 148 QEPLKDSVAGFQS 160
EP K+ +G S
Sbjct: 114 SEPDKNPTSGPSS 126
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 58 SSVTLHWRPPQDDGHS-PVTGYVLESHDKDEFMVWNKIETTSTT-YEVTKLTTKHEYMFR 115
+SVTL W D G+S PVT Y ++ + +++ +TT Y + L+ EY FR
Sbjct: 22 TSVTLTW----DSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFR 77
Query: 116 VAAVNAIGTGPASHNTR 132
V AVN+IG GP S R
Sbjct: 78 VLAVNSIGRGPPSEAVR 94
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 622 STLQYTVENLRDKSEYYFQVFAENSVGLGP 651
+T +Y++ L SEY F+V A NS+G GP
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGP 88
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%)
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
+ A N +G ++ T + A PVI + V +V + C G PT
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
P+I W K+ + + N Y + N E +G+Y C A N GT + T L
Sbjct: 140 PNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691
RD + Y + AEN VG +A + L + +P P+ + + ++ T+
Sbjct: 75 RDDAPY--ECVAENGVG---DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL 129
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ K +P P+I W +N + S + + DG L++ E E D G Y+ VA N
Sbjct: 130 MTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQI-ENSREEDQGKYECVAENS 185
Query: 752 LGSA-THGARVTVDVEKVG 769
+G+ + + V V +VG
Sbjct: 186 MGTEHSKATNLYVKVRRVG 204
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD--GENIIL 730
P I + + + V+ G + P PSIVW +N K + + + + + G IL
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 731 ELKEADSETDAGDYKVVATNELGSA 755
++ + D Y+ VA N +G A
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDA 91
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV--VRA--DTSTYTVTATNAAG- 588
G P P I W KNG +++ +++ R + E+ I+I + VRA D + Y A N G
Sbjct: 32 GDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGD 90
Query: 589 STSLDLSLQV 598
+ S D +L +
Sbjct: 91 AVSADATLTI 100
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 729
P+FI+ E++T G + + P P I W + K + S ++ E+ DG +
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV--SSQRFEVIEFDDGAGSV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
L ++ + D Y+ ATN LG A+++V E+ P SID+
Sbjct: 65 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDM 113
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 85/223 (38%), Gaps = 67/223 (30%)
Query: 534 GFPRPEISWMKNGAEITDSKACRI-FIDEETSTIAIYSV-VRADTSTYTVTATNAAGSTS 591
G P+P I+WMK G +++ + I F D S + I + V+ D + Y TATN+ G +
Sbjct: 32 GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN 91
Query: 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
L VL ++E+ F S+ +GP
Sbjct: 92 TSAKLSVL-----EEEQLPPGFP-------------------------------SIDMGP 115
Query: 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK 711
+ ++V A AT+ + +P P I WF++
Sbjct: 116 Q--LKVVEKARTATM--------------------------LCAAGGNPDPEISWFKDFL 147
Query: 712 PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754
P+ + I + L++ E+ E+D G Y+ VATN G+
Sbjct: 148 PVDPATSNGRIKQLRSGALQI-ESSEESDQGKYECVATNSAGT 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 161 SVTLECVVSGVPTPDIKWYKD----DSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 216
+ T+ C G P P+I W+KD D I + A + + ES +G+Y C A
Sbjct: 125 TATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGA-LQIESSEESDQGKYECVA 183
Query: 217 TNEAGT 222
TN AGT
Sbjct: 184 TNSAGT 189
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 29/107 (27%)
Query: 139 PVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVAR 198
PV + P Q L VA F C +G P P I W K KG+ ++ + R
Sbjct: 7 PVFIKVPEDQTGLSGGVASFV------CQATGEPKPRITWMK-----KGKKVSSQ----R 51
Query: 199 FTVVNCSESS--------------EGRYTCKATNEAGTAETSCTLLV 231
F V+ + + E Y C ATN G TS L V
Sbjct: 52 FEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 98
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA-DTSTYTVTATN 585
+++ K G P P++SW NG + ++ + E+ I+ VVRA D Y A N
Sbjct: 24 RMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN 83
Query: 586 AAGSTSLDLSLQVL 599
AG + + L VL
Sbjct: 84 RAGEATFTVQLDVL 97
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P FI+ E ++ E R+ KV PAP + W+ N + + S + I + + +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
E +DAG Y VA N G AT ++ V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 168 VSGVPTPDIKWYKDDSLIKG----RNITYENNVAR--FTVVNCSESSEGRYTCKATNEAG 221
VSG+P PD+ WY + ++ + I E + F VV S++ G Y C A N AG
Sbjct: 29 VSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDA--GAYACVAKNRAG 86
Query: 222 TAETSCTLLVQGKE 235
A + L V KE
Sbjct: 87 EATFTVQLDVLAKE 100
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%)
Query: 114 FRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173
+ A N +G ++ T + A PVI + V +V + C G PT
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 141
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230
P+I W K+ + + N Y + N E +G+Y C A N GT + T L
Sbjct: 142 PNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNL 198
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691
RD + Y + AEN VG +A + L + +P P+ + + ++ T+
Sbjct: 77 RDDAPY--ECVAENGVG---DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL 131
Query: 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751
+ K +P P+I W +N + S + + DG L++ E E D G Y+ VA N
Sbjct: 132 MTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQI-ENSREEDQGKYECVAENS 187
Query: 752 LGS 754
+G+
Sbjct: 188 MGT 190
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-- 724
GS P I + + + V+ G + P PSIVW +N K + + + + +
Sbjct: 3 GSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 62
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSA 755
G IL ++ + D Y+ VA N +G A
Sbjct: 63 GGISILRIEPVRAGRDDAPYECVAENGVGDA 93
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV--VRA--DTSTYTVTATNAAG- 588
G P P I W KNG +++ +++ R + E+ I+I + VRA D + Y A N G
Sbjct: 34 GDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGD 92
Query: 589 STSLDLSLQV 598
+ S D +L +
Sbjct: 93 AVSADATLTI 102
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 107 TTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA-PVDAEAPVIQEPLKDSVAGFQSSVTLE 165
T + E ++ A N +G S +TR V++ + P I + V + T+
Sbjct: 72 TPRDEAIYECVASNNVGE--ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATML 129
Query: 166 CVVSGVPTPDIKWYK-----DDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNE 219
C SG P P+I W+K D S GR ++ + ES +G+Y C ATN
Sbjct: 130 CAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNS 189
Query: 220 AGTAETS-CTLLVQG 233
AGT ++ L V+G
Sbjct: 190 AGTRYSAPANLYVRG 204
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE----KTVKEKGT 689
+ E ++ A N+VG ++++T T+ Q P + K V+ T
Sbjct: 74 RDEAIYECVASNNVGE--------ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI--FDGENIILELKEADSETDAGDYKVV 747
++ +P P I WF++ P+ +S I E+I E E+D G Y+ V
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 748 ATNELGS 754
ATN G+
Sbjct: 186 ATNSAGT 192
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 729
P F ++T G + + P P IVW + K + S ++ E+ DG +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV--SNQRFEVIEFDDGSGSV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L ++ + D Y+ VA+N +G + R+TV
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G PRP+I W K G ++++ + I D+ + ++ +R D + Y A+N G S
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEIS 91
Query: 592 LDLSLQVL 599
+ L VL
Sbjct: 92 VSTRLTVL 99
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 111 EYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG 170
E ++ N +G P H+ + VV AP Q+P K V VT+ C V+G
Sbjct: 282 EGVYTCEVDNGVGK-PQKHSLKLTVVSAP-----KYEQKPEKVIVVKQGQDVTIPCKVTG 335
Query: 171 VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
+P P++ W + + G T + + + +G Y C+ATNE G
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTD--SGLVIKGVKNGDKGYYGCRATNEHG 384
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 672 APLFIERFEEKTVKEKGT-IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
AP + ++ E+ V ++G + + KV PAP++VW N KPL S + + D +I
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSGLVIK 365
Query: 731 ELKEADSETDAGDYKVVATNELG 753
+K D G Y ATNE G
Sbjct: 366 GVKNGDK----GYYGCRATNEHG 384
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 478 KRVLQKLAVPFSYKTRTTNLQIQ-SPPQQPAIKLV-----DSNLKSQRLSVKSQWK---V 528
KR+L K +P T + PQ+ ++KL K +++ V Q + +
Sbjct: 270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTI 329
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
K G P P + W N ++ +A S + I V D Y ATN G
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPLSGGRATVT-----DSGLVIKGVKNGDKGYYGCRATNEHG 384
Query: 589 STSLDLSLQV 598
+ +QV
Sbjct: 385 DKYFETLVQV 394
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 145 PVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---GRNITYENNVARFT 200
PVI Q P+ +VA + L CV +G P P I W KD L+ R EN V +
Sbjct: 9 PVIRQGPVNQTVA-VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
++ GRYTC A+ +G A S + VQ
Sbjct: 68 YAKLGDT--GRYTCIASTPSGEATWSAYIEVQ 97
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P+ + +TV GT L SP P+I+W ++ +L S + I EN +L++
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG--VLVSTQDSRIKQLENGVLQI 66
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 771
+ A D G Y +A+ G AT A ++V++ G P
Sbjct: 67 RYAK-LGDTGRYTCIASTPSGEATWSAY--IEVQEFGVP 102
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVW----NKIET 96
LS P APD P I S++SV + W P+ +G P+ + +E + W + I
Sbjct: 15 LSPPEAPDRPTISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 73
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+ + E+T L Y FRV A+N +G S +R VV
Sbjct: 74 SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 41 LSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS-- 98
+ PG P ++ + +SVTL W PP DG S + Y++E + ++ + T
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTR-KAYSTVATNCHK 61
Query: 99 TTYEVTKLTTKHEYMFRVAAVNAIGTG 125
T+++V +L Y FRV A N G G
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIG 88
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 58 SSVTLHWRPPQDDGHSPVTGYVLESHDK--DEFMVWNKIETTSTTYEVTKLTTKHEYMFR 115
+SV+L W P+ DG S + GY++E K D++ ++ T T +T L EY FR
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEAT--ITGLIQGEEYSFR 174
Query: 116 VAAVNAIG 123
V+A N G
Sbjct: 175 VSAQNEKG 182
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651
LD ++ YI++++E ++ VAT + + V+ L++ YYF+V AEN G+G
Sbjct: 31 LDGGSKIKNYIVEKRESTRKAYSTVAT-NCHKTSWKVDQLQEGCSYYFRVLAENEYGIGL 89
Query: 652 EATTELVALATHATLGSPGQAPLF 675
A T A+ L PG+ L
Sbjct: 90 PAETAESVKASERPL-PPGKITLM 112
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 593 DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649
D ++LGYI++ Q K S K+ AT+ + T+ L EY F+V A+N G+
Sbjct: 129 DGGSRILGYIVEMQTKGSDKWATCATV--KVTEATITGLIQGEEYSFRVSAQNEKGI 183
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY----ENNVAR 198
EAP I E ++ G S V G P P+ +WYK+ I+ + Y E+NV
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 199 FTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+ + + KA N AG + LLVQ K
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI--- 559
P A K+ + ++SQ + S V+ G P PE W KNG +I S RI+
Sbjct: 1 PSMEAPKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD--RIYWYWP 57
Query: 560 DEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
++ + I V D+++ V A N AG TS
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETS 89
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 323 DATFQVEL-SSPDIQVKWLKKGKEIKESAR-HIITSRGTQRKLVIKRVTQDDETDIGVLA 380
DA F+V + PD + +W K G +I+ S R + +LVI+ VT +D I V A
Sbjct: 22 DAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA 81
Query: 381 LNV 383
+N+
Sbjct: 82 INI 84
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENII- 729
+AP ER + +TV + +V P P W++N + S + + +N+
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763
L +++ E D+ V A N G + A + V
Sbjct: 64 LVIRDVTGE-DSASIMVKAINIAGETSSHAFLLV 96
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203
AP LKD L+C V G P P I W + I+ T E VA + +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQD 70
Query: 204 CSESSEGRYTCKATNEAGTAETSCTLLV 231
G YTC A N G + SC+ V
Sbjct: 71 ALPEDHGTYTCLAENALG--QVSCSAWV 96
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 667 GSPGQ--APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
GS G AP F ++ V E L V+ +P P I W N +P+ + E
Sbjct: 4 GSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGV 63
Query: 725 GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
E L +++A E D G Y +A N LG + A VTV
Sbjct: 64 AE---LHIQDALPE-DHGTYTCLAENALGQVSCSAWVTV 98
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 534 GFPRPEISWMKNGAEITDSKA-CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
G P P I+W+ NG I +++ C + E + I + D TYT A NA G S
Sbjct: 37 GTPVPRITWLLNGQPIQYARSTCEAGVAE----LHIQDALPEDHGTYTCLAENALGQVS 91
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-ITYENNVARFTVVNCSESSE 209
+ D+ A S + CV SG P P ++W +D + +N I RF+ + +S
Sbjct: 301 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDS-- 358
Query: 210 GRYTCKATNEAGTAETSCTLLVQ 232
G Y C A N+ GT S L VQ
Sbjct: 359 GMYQCVAENKHGTVYASAELTVQ 381
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 144 APVIQEPL-KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVV 202
AP I+ D+ A VTLEC G P P IKW K D + ++ E +
Sbjct: 206 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE---PLLHIQ 262
Query: 203 NCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDD 262
N EG Y C+A N ++G++ + R II A+ ++ D
Sbjct: 263 NVDFEDEGTYECEAEN------------IKGRDTYQ-GRIIIHAQPDWLDVIT-----DT 304
Query: 263 ETDIGV-LALNVKSVSKLKWLARWTSDLESTA 293
E DIG L + + K + RW D + A
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLA 336
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDYK 745
+R P P++ W R+ +P L+S + E+ GE ++LE D+G Y+
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQP-LASQNRIEVSGGELRFSKLVLE--------DSGMYQ 362
Query: 746 VVATNELGSATHGARVTV 763
VA N+ G+ A +TV
Sbjct: 363 CVAENKHGTVYASAELTV 380
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 672 APLFIER-----FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDG 725
P+F E+ F E + +EK + L + +A+P + W N L P R + G
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEK--VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 726 ENIILELKEADSETDAGDYKVVATNELGS 754
+ +I +A DAG Y+ VATN G+
Sbjct: 62 DLVISNPVKAK---DAGSYQCVATNARGT 87
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKI--ETTSTTY 101
PG P P++ + +SVTL W+ P G P + Y++E+ + W + +T Y
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLY 74
Query: 102 EVTKLTTKHEYMFRVAAVNAIG 123
V L Y+F V A+N G
Sbjct: 75 TVRGLRPNTIYLFMVRAINPQG 96
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221
VTLEC G P P IKW K D + + T E + + + S EG Y C+A N G
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPTL---QIPSVSFEDEGTYECEAENSKG 280
Query: 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGV-LALNVKSVSKLK 280
VQG+ I ++ + +V D E DIG L + K +
Sbjct: 281 RD------TVQGRIIVQAQPEWL------------KVISDTEADIGSNLRWGCAAAGKPR 322
Query: 281 WLARWTSDLESTA 293
RW + E A
Sbjct: 323 PTVRWLRNGEPLA 335
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN-ITYENNVARFTVVNCSESSE 209
+ D+ A S++ C +G P P ++W ++ + +N + RF+ ++ +S
Sbjct: 300 ISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDS-- 357
Query: 210 GRYTCKATNEAGTAETSCTLLVQ 232
G Y C A N+ GT S L VQ
Sbjct: 358 GMYQCVAENKHGTIYASAELAVQ 380
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749
+R P P++ W RN +P L+S + E+ G+ +L S D+G Y+ VA
Sbjct: 311 LRWGCAAAGKPRPTVRWLRNGEP-LASQNRVEVLAGDLRFSKL----SLEDSGMYQCVAE 365
Query: 750 NELGSATHGARVTV 763
N+ G+ A + V
Sbjct: 366 NKHGTIYASAELAV 379
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE 738
F E++ +E+ + L + +ASP + W N + P R G N++ +
Sbjct: 15 FPEESTEEQ--VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLV--IMNPTKA 70
Query: 739 TDAGDYKVVATNELGS 754
DAG Y+ +A+N +G+
Sbjct: 71 QDAGVYQCLASNPVGT 86
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 25/134 (18%)
Query: 8 LTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP 67
L I D D G Y + +N +G + L P +P +I+ S ++ + + P
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 68 QDDGHSPVTGY-------------VLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
G P+ Y ++ SH +V N +E +TTYE+
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLE-PNTTYEI----------- 267
Query: 115 RVAAVNAIGTGPAS 128
RVAAVN G G S
Sbjct: 268 RVAAVNGKGQGDYS 281
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSSPKKREIFDGENII 729
AP FI E I + VK++P SI W R+ P ++ + G +I
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 730 LELKEADSETDAGDYKVVATNELGS 754
LE+ S+ D G Y ATN +G+
Sbjct: 160 LEIAPT-SDNDFGRYNCTATNHIGT 183
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFT--------VVNCSESSEGRYT 213
+ + C V P I W +D ++ +N T N+ ++ + S++ GRY
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTT---NLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 214 CKATNEAGT 222
C ATN GT
Sbjct: 175 CTATNHIGT 183
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYK---------DDSLIKGR-NITYENNVARFT 200
LK+ VTL C G P P+I W + D + GR + ++ +
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + S GRY C+A + G + S L ++
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIY 569
++ + L+ +S S K VK G PRP W K+G IT ++ D+ + I+
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIH 67
Query: 570 SVVRADTSTYTVTATNAAGSTSLDLSLQV 598
+D+ YT T N+AGS S L +
Sbjct: 68 KTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P+ + ++ TV + K P P+ +W ++ K + K + D LE+
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 733 KEADSETDAGDYKVVATNELGSATHGARVTV 763
+ D+ +D+G Y N GS + ++T+
Sbjct: 67 HKTDT-SDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 138 APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI--KGRNITYENN 195
P+ ++ PVI L+D+ S +G P P W KD I G+ E+
Sbjct: 1 GPISSK-PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 196 VARFTVVNCSESSE-GRYTCKATNEAGTAETSCTLLVQ 232
F ++ +++S+ G YTC N AG+ +SC L ++
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 8 LTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP 67
L I D D G Y + +N +G + L P +P +I+ S ++ + + P
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 68 QDDGHSPVTGY-------------VLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
G P+ Y ++ SH +V N +E +TTYE+
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLE-PNTTYEI----------- 267
Query: 115 RVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSS 161
RVAAVN G G S K + PV +EP S+ G SS
Sbjct: 268 RVAAVNGKGQGDYS--------KIEIFQTLPV-REPSPPSIHGQPSS 305
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYK---------DDSLIKGR-NITYENNVARFT 200
LK+ VTL C G P P+I W + D + GR + ++ +
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66
Query: 201 VVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ + S GRY C+A + G + S L ++
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFT--------VVNCSESSEGRYT 213
+ + C V P I W +D ++ +N T N+ ++ + S++ GRY
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTT---NLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 214 CKATNEAGT 222
C ATN GT
Sbjct: 175 CTATNHIGT 183
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLLSSPKKREIFDGENII 729
AP FI E I + VK++P SI W R+ P ++ + G +I
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 730 LELKEADSETDAGDYKVVATNELGS 754
LE+ S+ D G Y ATN +G+
Sbjct: 160 LEIAPT-SDNDFGRYNCTATNHIGT 183
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 43/252 (17%)
Query: 1 MEEDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSV 60
+ +++ L I K E D+G+YT ++N + T +L P TP I+ R+D V
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTV------TNHKVLGPP----TPLIL-RNDG-V 199
Query: 61 TLHWRP----------PQDDG----------HSPVTGYVLESHDKDEFMVWNKIETTSTT 100
+ P P + G +PV + D + ++
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160
E+ + + A N+ G A + P + + D +
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA--------QPNWVQIINDIHVAMEE 311
Query: 161 SVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
SV EC +G P P +W K+ D L+ I E T+VN S++ G Y C A N+
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDA--GMYQCVAENK 369
Query: 220 AGTAETSCTLLV 231
G +S L V
Sbjct: 370 HGVIFSSAELSV 381
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 113/309 (36%), Gaps = 57/309 (18%)
Query: 511 VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS 570
+DS K +LS EVK G P+P I W NG ++ R + + + I +
Sbjct: 19 LDSEEKKVKLSC------EVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPN 70
Query: 571 VVRADTSTYTVTATNAAGS-TSLDLSLQVL-------------------GYII---QQQE 607
+ D TY ATN+ G+ S + LQ G ++
Sbjct: 71 KTQ-DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH 129
Query: 608 KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667
L + + PS ++ Y ++ VG T V H LG
Sbjct: 130 SGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT--NHKVLG 187
Query: 668 SPGQAPLFIE--------------RFEEKTVKEKGT-IRLMAKVKASPAPSIVWFR-NNK 711
P PL + +F E EKGT ++L +P P+I+W R + K
Sbjct: 188 PP--TPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK 245
Query: 712 PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 771
P+ ++ + N ILE+ E DAG Y+ VA N G ++T +
Sbjct: 246 PIARKARRHK----SNGILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ 300
Query: 772 SINSIDIDL 780
IN I + +
Sbjct: 301 IINDIHVAM 309
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 668 SPGQAPLFIERFEEKTV---KEKGTIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIF 723
PG P+F++ E+ ++L +VK +P P I W N + + + +
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGS 754
DG L + + DAG Y+ +ATN G+
Sbjct: 61 DGS---LLINNPNKTQDAGTYQCIATNSFGT 88
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 47/261 (18%)
Query: 541 SWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL-----DLS 595
+W+ N E + R F+ +ET + I V ++D YT TN + + L
Sbjct: 136 AWIFN--EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193
Query: 596 LQVLGYIIQQQEKNSLKFTKVATLDPST--------LQYTVENL---------------R 632
L+ G + + + K ++F + + T L V + R
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 633 DKSEYYFQV--FAENSVGLGPEATTELVALATHATLGSPGQ-----APLFIERFEEKTVK 685
KS ++ F + G + E VA + + GQ P +++ + V
Sbjct: 254 HKSNGILEIPNFQQEDAG-----SYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVA 308
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745
+ ++ K P P+ W +N PLL+ R+ E L + + +DAG Y+
Sbjct: 309 MEESVFWECKANGRPKPTYRWLKNGDPLLT----RDRIQIEQGTLNITIVNL-SDAGMYQ 363
Query: 746 VVATNELGSATHGARVTVDVE 766
VA N+ G A ++V E
Sbjct: 364 CVAENKHGVIFSSAELSVIAE 384
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
E K G P+P W+KNG D R I E T+ I V +D Y A N G
Sbjct: 316 ECKANGRPKPTYRWLKNG----DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Query: 589 STSLDLSLQVL 599
L V+
Sbjct: 372 VIFSSAELSVI 382
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
G+GP V V+ P P+ E + V L C V G P P I+W +
Sbjct: 3 GSGP-------VFVQEPSHVMFPLDSE---------EKKVKLSCEVKGNPKPHIRWKLNG 46
Query: 183 SLIK-GRNITYENNVARFTVVNCSESSE-GRYTCKATNEAGT 222
+ + G + Y + N +++ + G Y C ATN GT
Sbjct: 47 TDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGT 88
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNVARFTVVNCSESSE 209
+ D + SV EC +G P P +W K+ D L+ I E T+VN S++
Sbjct: 301 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDA-- 358
Query: 210 GRYTCKATNEAGTAETSCTLLV 231
G Y C A N+ G +S L V
Sbjct: 359 GMYQCVAENKHGVIFSSAELSV 380
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 113/309 (36%), Gaps = 57/309 (18%)
Query: 511 VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS 570
+DS K +LS EVK G P+P I W NG ++ R + + + I +
Sbjct: 18 LDSEEKKVKLSC------EVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPN 69
Query: 571 VVRADTSTYTVTATNAAGS-TSLDLSLQVL-------------------GYII---QQQE 607
+ D TY ATN+ G+ S + LQ G ++
Sbjct: 70 KTQ-DAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPH 128
Query: 608 KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667
L + + PS ++ Y ++ VG T V H LG
Sbjct: 129 SGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT--NHKVLG 186
Query: 668 SPGQAPLFIE--------------RFEEKTVKEKGT-IRLMAKVKASPAPSIVWFR-NNK 711
P PL + +F E EKGT ++L +P P+I+W R + K
Sbjct: 187 PP--TPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK 244
Query: 712 PLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 771
P+ ++ + N ILE+ E DAG Y+ VA N G ++T +
Sbjct: 245 PIARKARRHK----SNGILEIPNFQQE-DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ 299
Query: 772 SINSIDIDL 780
IN I + +
Sbjct: 300 IINDIHVAM 308
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 669 PGQAPLFIERFEEKTV---KEKGTIRLMAKVKASPAPSIVWFRNNKPL-LSSPKKREIFD 724
PG P+F++ E+ ++L +VK +P P I W N + + + + D
Sbjct: 1 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 60
Query: 725 GENIILELKEADSETDAGDYKVVATNELGS 754
G L + + DAG Y+ +ATN G+
Sbjct: 61 GS---LLINNPNKTQDAGTYQCIATNSFGT 87
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 47/261 (18%)
Query: 541 SWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL-----DLS 595
+W+ N E + R F+ +ET + I V ++D YT TN + + L
Sbjct: 135 AWIFN--EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 192
Query: 596 LQVLGYIIQQQEKNSLKFTKVATLDPST--------LQYTVENL---------------R 632
L+ G + + + K ++F + + T L V + R
Sbjct: 193 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 252
Query: 633 DKSEYYFQV--FAENSVGLGPEATTELVALATHATLGSPGQ-----APLFIERFEEKTVK 685
KS ++ F + G + E VA + + GQ P +++ + V
Sbjct: 253 HKSNGILEIPNFQQEDAG-----SYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVA 307
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745
+ ++ K P P+ W +N PLL+ R+ E L + + +DAG Y+
Sbjct: 308 MEESVFWECKANGRPKPTYRWLKNGDPLLT----RDRIQIEQGTLNITIVNL-SDAGMYQ 362
Query: 746 VVATNELGSATHGARVTVDVE 766
VA N+ G A ++V E
Sbjct: 363 CVAENKHGVIFSSAELSVIAE 383
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
++V LEC G P P I W + D R + + N + G Y C A N
Sbjct: 220 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 279
Query: 220 AG 221
G
Sbjct: 280 RG 281
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
E K G P+P W+KNG D R I E T+ I V +D Y A N G
Sbjct: 315 ECKANGRPKPTYRWLKNG----DPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Query: 589 STSLDLSLQVL 599
L V+
Sbjct: 371 VIFSSAELSVI 381
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 123 GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
G+GP V V+ P P+ E + V L C V G P P I+W +
Sbjct: 2 GSGP-------VFVQEPSHVMFPLDSE---------EKKVKLSCEVKGNPKPHIRWKLNG 45
Query: 183 SLIK-GRNITYENNVARFTVVNCSESSE-GRYTCKATNEAGT 222
+ + G + Y + N +++ + G Y C ATN GT
Sbjct: 46 TDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGT 87
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 609 NSLKFTKVATLDPSTLQYTVENLR-DKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667
NS +F + + + ++ LR + E ++ A+NSVG + HA L
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVG----------EITVHAKLT 97
Query: 668 S------PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
P P + K V+ T ++ +P P I WF++ P+ S
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELG 753
I + L++ E+ ETD G Y+ VATN G
Sbjct: 158 IKQLRSGALQI-ESSEETDQGKYECVATNSAG 188
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 161 SVTLECVVSGVPTPDIKWYK-----DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+ T+ C SG P P+I W+K D S GR + + + E+ +G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGR--IKQLRSGALQIESSEETDQGKYECV 182
Query: 216 ATNEAGTAETS 226
ATN AG +S
Sbjct: 183 ATNSAGVRYSS 193
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 99/272 (36%), Gaps = 56/272 (20%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G P+P ++W K G ++ + I DE + +R D + Y A N+ G +
Sbjct: 32 GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT 91
Query: 592 LDLSLQVL-------GY--IIQQQEKNSLKFTKVATL---------------------DP 621
+ L VL G+ I + ++ T+ AT+ DP
Sbjct: 92 VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP 151
Query: 622 STLQYTVENLR----------DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671
S ++ LR + + ++ A NS G+ + L +
Sbjct: 152 SASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV------- 204
Query: 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731
AP F + G + + SP P + W + + L + ++ G N +LE
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP---EDDMPVGRN-VLE 260
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTV 763
L + D+ +Y VA + LG A++TV
Sbjct: 261 LTDVK---DSANYTCVAMSSLGVIEAVAQITV 289
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENII 729
+ P FI+ +++ G + + P P + W + K + S + FD +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV---DVEKVGRPSIN 774
L ++ + D Y+ VA N +G T A++TV D G P+I+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNID 112
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 87/237 (36%), Gaps = 50/237 (21%)
Query: 6 ATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLL-SAPGAPDTPEIVGRSDSSVTLHW 64
A LT+++ + G I + L T T+L +A G PD PEI D L
Sbjct: 94 AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD-PEITWFKD---FLPV 149
Query: 65 RPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGT 124
P +G ++ + + E ++ T + +Y A N+ G
Sbjct: 150 DPSASNGR------------------IKQLRSGALQIESSEETDQGKY--ECVATNSAGV 189
Query: 125 GPASHNTRYVVVK--APVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-- 180
+S YV V+ AP + P+ E + +V + CV G P P +KW +
Sbjct: 190 RYSSPANLYVRVQNVAPRFSILPMSHEIMPG------GNVNITCVAVGSPMPYVKWMQGA 243
Query: 181 -----DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232
+D + GRN+ +V YTC A + G E + V+
Sbjct: 244 EDLTPEDDMPVGRNVLELTDV----------KDSANYTCVAMSSLGVIEAVAQITVK 290
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 609 NSLKFTKVATLDPSTLQYTVENLR-DKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667
NS +F + + + ++ LR + E ++ A+NSVG + HA L
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVG----------EITVHAKLT 97
Query: 668 S------PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
P P + K V+ T ++ +P P I WF++ P+ S
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELG 753
I + L++ E+ ETD G Y+ VATN G
Sbjct: 158 IKQLRSGALQI-ESSEETDQGKYECVATNSAG 188
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 161 SVTLECVVSGVPTPDIKWYK-----DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+ T+ C SG P P+I W+K D S GR + + + E+ +G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--LQIESSEETDQGKYECV 182
Query: 216 ATNEAGTAETS 226
ATN AG +S
Sbjct: 183 ATNSAGVRYSS 193
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G P+P ++W K G ++ + I DE + +R D + Y A N+ G +
Sbjct: 32 GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT 91
Query: 592 LDLSLQVL 599
+ L VL
Sbjct: 92 VHAKLTVL 99
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENII 729
+ P FI+ +++ G + + P P + W + K + S + FD +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV---DVEKVGRPSIN 774
L ++ + D Y+ VA N +G T A++TV D G P+I+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNID 112
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P PEI+W K+ + S + + + I S D Y ATN+AG
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 609 NSLKFTKVATLDPSTLQYTVENLR-DKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667
NS +F + + + ++ LR + E ++ A+NSVG + HA L
Sbjct: 48 NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVG----------EITVHAKLT 97
Query: 668 S------PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE 721
P P + K V+ T ++ +P P I WF++ P+ S
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELG 753
I + L++ E+ ETD G Y+ VATN G
Sbjct: 158 IKQLRSGALQI-ESSEETDQGKYECVATNSAG 188
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 161 SVTLECVVSGVPTPDIKWYK-----DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+ T+ C SG P P+I W+K D S GR + + + E+ +G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--LQIESSEETDQGKYECV 182
Query: 216 ATNEAGTAETS 226
ATN AG +S
Sbjct: 183 ATNSAGVRYSS 193
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G P+P ++W K G ++ + I DE + +R D + Y A N+ G +
Sbjct: 32 GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEIT 91
Query: 592 LDLSLQVL 599
+ L VL
Sbjct: 92 VHAKLTVL 99
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENII 729
+ P FI+ +++ G + + P P + W + K + S + FD +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV---DVEKVGRPSIN 774
L ++ + D Y+ VA N +G T A++TV D G P+I+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNID 112
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P PEI+W K+ + S + + + I S D Y ATN+AG
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE 193
V+V P A ++ ++ A SVTL C G P P + W KD G I E
Sbjct: 6 VIVNVPPSVRA---RQSTMNATANLSQSVTLACDADGFPEPTMTWTKD-----GEPIEQE 57
Query: 194 NNVARFT---------VVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
+N +++ + +S E Y C A N+AG + + L V K
Sbjct: 58 DNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKVFAK 107
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 534 GFPRPEISWMKNGAEI-TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
GFP P ++W K+G I + + + + S + I V ++D + Y A N AG
Sbjct: 39 GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDA 98
Query: 593 DLSLQVLG 600
+ L+V
Sbjct: 99 TIHLKVFA 106
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE--NNVARFTVVNCSESS 208
KD A +VTLEC G P PDI+W K +++ T E + A + N
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRK---VLEPMPSTAEISTSGAVLKIFNIQLED 176
Query: 209 EGRYTCKATNEAGTAETSCTLLVQG 233
EG Y C+A N G + + VQ
Sbjct: 177 EGIYECEAENIRGKDKHQARIYVQA 201
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 50 PEIVGRSDS-SVTLHWRPPQDDGHSPVTGYVLESH--DKDE-FMVWNKIETTSTTYEVTK 105
P + GR + + L W PP DG SP++ Y +E +KDE V+ E T V+
Sbjct: 15 PRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT---VSS 71
Query: 106 LTTKHEYMFRVAAVNAIGTGPAS 128
L Y FR+ A N +G GP S
Sbjct: 72 LLPGKTYSFRLRAANKMGFGPFS 94
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYT 580
+V + ++ KY G+P PEI W KNG + + + + I V DT YT
Sbjct: 213 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYT 267
Query: 581 VTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611
V TN + ++ Y+ Q + SL
Sbjct: 268 VILTNPISKEKQSHVVSLVVYVPPQIGEKSL 298
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEA 735
+E E TV E+ +R+ AK P P I W++N PL S+ I G +L + E
Sbjct: 206 MESLVEATVGER--VRIPAKYLGYPPPEIKWYKNGIPLESN---HTIKAGH--VLTIMEV 258
Query: 736 DSETDAGDYKVVATNEL 752
SE D G+Y V+ TN +
Sbjct: 259 -SERDTGNYTVILTNPI 274
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 170 GVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218
G P P+IKWYK+ ++ + +V T++ SE G YT TN
Sbjct: 226 GYPPPEIKWYKNGIPLESNHTIKAGHV--LTIMEVSERDTGNYTVILTN 272
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 161 SVTLECVVSGVPTPDIKWYKD----DSLIKGRNITYENNVARFTVVNCSESSEGRYTCKA 216
+ T+ C G P P+I W+KD D I + A + + ES +G+Y C A
Sbjct: 126 TATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGA-LQIESSEESDQGKYECVA 184
Query: 217 TNEAGT 222
TN AGT
Sbjct: 185 TNSAGT 190
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF---DGENII 729
P+F++ E++T G + + P P I W + K + S ++ E+ DG +
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV--SSQRFEVIEFDDGAGSV 65
Query: 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV---DVEKVGRPSIN 774
L ++ + D Y+ ATN LG A+++V D G P+I+
Sbjct: 66 LRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTID 113
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRI-FIDEETSTIAIYSV-VRADTSTYTVTATNAAGSTS 591
G P+P I+WMK G +++ + I F D S + I + V+ D + Y TATN+ G +
Sbjct: 33 GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN 92
Query: 592 LDLSLQVL 599
L VL
Sbjct: 93 TSAKLSVL 100
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 684 VKEKG-TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742
V EKG T ++ +P P I WF++ P+ + I + L++ E+ E+D G
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQI-ESSEESDQG 178
Query: 743 DYKVVATNELGS 754
Y+ VATN G+
Sbjct: 179 KYECVATNSAGT 190
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 36/121 (29%)
Query: 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL 184
GP S +++ V VK P D Q L VA F C +G P P I W K
Sbjct: 1 GPGS-DSKPVFVKVPED------QTGLSGGVASFV------CQATGEPKPRITWMK---- 43
Query: 185 IKGRNITYENNVARFTVVNCSESS--------------EGRYTCKATNEAGTAETSCTLL 230
KG+ ++ + RF V+ + + E Y C ATN G TS L
Sbjct: 44 -KGKKVSSQ----RFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLS 98
Query: 231 V 231
V
Sbjct: 99 V 99
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589
G P PEISW K+ + + + + + I S +D Y ATN+AG+
Sbjct: 135 GNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGT 190
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P F +++V+E + + +V+ P P + W RN +P + ++R + E + L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP-VRPDQRRFAEEAEGGLCRL 64
Query: 733 KEADSET-DAGDYKVVATNELGSATHGARVTVDVE 766
+ +E DAG Y A NE G+ AR+ V E
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 137 KAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY---- 192
KAP P + L D V + V G P P + W ++ ++ +
Sbjct: 3 KAP-----PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA 57
Query: 193 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
E + R ++ G YTCKA NE G + L V+G+
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI 559
++PP + L+D +++ + + S ++ G P+P +SW++N + + R F
Sbjct: 3 KAPPTF-KVSLMDQSVREGQDVIMS-----IRVQGEPKPVVSWLRNRQPVRPDQ--RRFA 54
Query: 560 DEETSTIA---IYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
+E + I + R D YT A N G+ + L+V G
Sbjct: 55 EEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRI-FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
+G P PE+SW+KN + + C + F T+ I V AD+ Y + N GS +
Sbjct: 142 WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET 201
Query: 592 LDLSLQVL 599
D ++ V
Sbjct: 202 SDFTVSVF 209
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 8/139 (5%)
Query: 633 DKSEYYFQVF-----AENSVGLGPEATTELVA---LATHATLGSPGQAPLFIERFEEKTV 684
DK +Y ++F + +V L +A E A A + +A + + T+
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI 129
Query: 685 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY 744
+E + L V P P + W +N K L + F+ S D+G Y
Sbjct: 130 QEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKY 189
Query: 745 KVVATNELGSATHGARVTV 763
+V N+ GS T V+V
Sbjct: 190 GLVVKNKYGSETSDFTVSV 208
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYE-NNVARFTVVNCSESSEGRYTCKA 216
++ L C V G P P++ W K++ + N+ +E A FT+ S + G+Y
Sbjct: 134 ALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 193
Query: 217 TNEAGTAETSCTLLV 231
N+ G+ + T+ V
Sbjct: 194 KNKYGSETSDFTVSV 208
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576
+Q L+V ++ K G P P ISW+K G + R I E+ T+ I ++ +DT
Sbjct: 17 NQTLAVDGTALLKCKATGDPLPVISWLKEGFTF-PGRDPRATIQEQ-GTLQIKNLRISDT 74
Query: 577 STYTVTATNAAGSTSLDLSLQV 598
TYT AT+++G TS L V
Sbjct: 75 GTYTCVATSSSGETSWSAVLDV 96
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN--ITYENNVARFTVVN 203
++Q P ++A + L+C +G P P I W K+ GR+ T + + N
Sbjct: 11 ILQGPANQTLA-VDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ-GTLQIKN 68
Query: 204 CSESSEGRYTCKATNEAG 221
S G YTC AT+ +G
Sbjct: 69 LRISDTGTYTCVATSSSG 86
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM--VWNKIE 95
V + P P P I D +V L W+PP DG S VT Y +E K E M W+
Sbjct: 4 VADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIE---KREAMGGSWSPCA 60
Query: 96 TTSTTY-EVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136
+ TY + L +Y FR+ A N G T V++
Sbjct: 61 KSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHI 353
+W S++ P F+ K P T V A F +V SSP + V W K +E+K+S +++
Sbjct: 475 FWDRSEAQP--RFIVK-PYGTEVGEGQSANFYCRVIASSPPV-VTWHKDDRELKQSVKYM 530
Query: 354 ITSRGTQRKLVIKRVTQDDETDIGVLALN 382
G L I RV DD+ + V A N
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P FI + V E + +V AS P + W ++++ L S K + ++G + L +
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 733 KEADSETDAGDYKVVATNELGS 754
+ D G+Y V A N G+
Sbjct: 543 NRVKGD-DKGEYTVRAKNSYGT 563
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVA 197
+A+ I +P V QS+ C V P + W+KDD +K Y N
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSA-NFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 538
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
T+ +G YT +A N GT E L V
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGT 359
S S+ +E L + +T V A F+ E+S + KW K G E++ S R I+ G
Sbjct: 3 SGSSGQLEVLQDIADLT-VKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 360 QRKLVIKRVTQDDETD 375
KLVI V +DE D
Sbjct: 62 FHKLVIDDVRPEDEGD 77
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 533 FGFPRPEISWMKNGAEITDSKACRI-FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591
+G P PE+SW+KN + C + F T+ I V AD+ Y + N GS +
Sbjct: 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET 306
Query: 592 LDLSLQVL 599
D ++ V
Sbjct: 307 SDFTVSVF 314
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 8/139 (5%)
Query: 633 DKSEYYFQVF-----AENSVGLGPEATTELVA---LATHATLGSPGQAPLFIERFEEKTV 684
DK +Y ++F + +V L +A E A A + +A + + T+
Sbjct: 175 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI 234
Query: 685 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY 744
+E + L V P P + W +N K L S F+ S D+G Y
Sbjct: 235 QEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294
Query: 745 KVVATNELGSATHGARVTV 763
+V N+ GS T V+V
Sbjct: 295 GLVVKNKYGSETSDFTVSV 313
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYE-NNVARFTVVNCSESSEGRYTCKA 216
++ L C V G P P++ W K++ + N+ +E A FT+ S + G+Y
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV 298
Query: 217 TNEAGTAETSCTLLV 231
N+ G+ + T+ V
Sbjct: 299 KNKYGSETSDFTVSV 313
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEI-TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P ISW+KNG E + + I + + ++ + SVV +D YT N GS
Sbjct: 41 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
Query: 593 DLSLQVL 599
+L VL
Sbjct: 101 TYTLDVL 107
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 18/111 (16%)
Query: 145 PVIQEPL-KDSVAGFQSSVTLECVVSGVPTPDIKWYK----DDSLIKGRNITY------- 192
P++Q L + A S V C V P I+W K + S + Y
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173
Query: 193 -----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKE 238
E +V R + N SE G Y C+ATN G AE + L V G E
Sbjct: 174 ISESVEADV-RLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE 223
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCK 215
++V C +G PTP I W K+ +G + I + + + S G YTC
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 90
Query: 216 ATNEAGTAETSCTLLV 231
N+ G+ + TL V
Sbjct: 91 VENKFGSIRQTYTLDV 106
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK- 733
ER ++K V T+R +P PSI W +N + F GE+ I +K
Sbjct: 18 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE----------FRGEHRIGGIKL 67
Query: 734 ---------EADSETDAGDYKVVATNELGS 754
E+ +D G+Y V N+ GS
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGS 97
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMW 455
R + N SE G Y C+ATN G AE + W
Sbjct: 183 RLRLANVSERDGGEYLCRATNFIGVAE-KAFW 213
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 44 PGAPDTP--EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE--FMVWNKIETTST 99
P AP+ P + ++ L W P D G+SP+ Y+LE + + ++ ++ +T
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNAPWTVLLASVDPKAT 76
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+ V L Y FR+ AVN +G G S +T V
Sbjct: 77 SVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633
A ST A N + D + ++ YI++ E N+ +A++DP TV+ L
Sbjct: 26 ATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVP 85
Query: 634 KSEYYFQVFAENSVGLG 650
Y F++ A N VG G
Sbjct: 86 ARSYQFRLCAVNDVGKG 102
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKES-ARHIITSR 357
E KST F KL V VEL+ D +VKWLK G+EI+ S +++I S
Sbjct: 12 EKKSTA---FQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESI 68
Query: 358 GTQRKLVIKRVTQDDE 373
G +R L I + + D+
Sbjct: 69 GAKRTLTISQCSLADD 84
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI--KGRNITYENNVAR 198
+A AP + LK VT C V+G P P I W+KD I K + T + ++
Sbjct: 4 NATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 63
Query: 199 FTVVNCSESS---EGRYTCKATNEAGTAETSCTLLVQG 233
++ + S+ +G YT A N G + L+VQ
Sbjct: 64 TCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-----RE 721
GS AP F + + + E + +V +P P I WF++ K + SPK +
Sbjct: 2 GSNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI--SPKSDHYTIQR 59
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD-VEKVGR 770
DG + A + D G+Y ++A N G + R+ V V + GR
Sbjct: 60 DLDGTCSL--HTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQAVNQRGR 107
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G P+P+I W K+G +I+ + T ++++ D YT+ A N G S
Sbjct: 33 GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRVS 92
Query: 592 LDLSLQV 598
L V
Sbjct: 93 CTGRLMV 99
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEI-TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P ISW+KNG E + + I + + ++ + SVV +D YT N GS
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 593 DLSLQVL 599
+L VL
Sbjct: 209 TYTLDVL 215
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCK 215
++V C +G PTP I W K+ +G + I + + + S G YTC
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV 198
Query: 216 ATNEAGTAETSCTLLV 231
N+ G+ + TL V
Sbjct: 199 VENKFGSIRQTYTLDV 214
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELK- 733
ER ++K V T+R +P PSI W +N + F GE+ I +K
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE----------FRGEHRIGGIKL 175
Query: 734 ---------EADSETDAGDYKVVATNELGS 754
E+ +D G+Y V N+ GS
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL--------ESHD-KDEF 88
VT++S G P T + ++W+PP + + +TGY++ E HD E
Sbjct: 25 VTVVSKEGKPKT----------IIVNWQPP-SEANGKITGYIIYYSTDVNAEIHDWVIEP 73
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+V N++ T+++ +LT Y F++ A N+ G GP S ++ KA
Sbjct: 74 VVGNRL-----THQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 118
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 682 KTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENI 728
KTV + M KV + P P I W ++ N P + K + D E
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+L L+ E DAG+Y +A N +G + H A +TV
Sbjct: 185 VLHLRNVSFE-DAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEI-TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P+P + W+KNG E D + + T +I + SVV +D YT N GS +
Sbjct: 42 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 593 DLSLQVL 599
L V+
Sbjct: 102 TYQLDVV 108
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 161 SVTLECVVSGVPTPDIKW------YKDDSLIKGRNITYENNVARFTVVNCS--ESSEGRY 212
+V +C SG P P ++W +K D I G + Y A ++++ S S +G Y
Sbjct: 33 TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY----ATWSIIMDSVVPSDKGNY 88
Query: 213 TCKATNEAGT 222
TC NE G+
Sbjct: 89 TCIVENEYGS 98
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 134 VVVKAPVDAEAPVIQEPLK-DSVAGFQSSVTLECVVSGVPTPDIKWYK----DDSLIKGR 188
VV ++P P++Q L + S+V C V P P I+W K + S I
Sbjct: 107 VVERSP---HRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPD 163
Query: 189 NITY------------ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N+ Y + + + N S G YTC A N G + S L V
Sbjct: 164 NLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E+K V T++ +P P++ W +N K P R G +
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEF--KPDHR--IGGYKVRYATWS 74
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ ++ +D G+Y + NE GS H ++ V RP + +
Sbjct: 75 IIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 119
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 44 PGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESH-----DKDEFMVWNKI--ET 96
PG P I SVTL +RP D G + ++ +++E+ + +E+++ +++ E
Sbjct: 18 PGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEP 76
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYV 134
+ + EV L Y FR+ VN +GT P S +R +
Sbjct: 77 DARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 682 KTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENI 728
KTV + M KV + P P I W ++ N P + K + D E
Sbjct: 126 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 185
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+L L+ E DAG+Y +A N +G + H A +TV
Sbjct: 186 VLHLRNVSFE-DAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEI-TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P+P + W+KNG E D + + T +I + SVV +D YT N GS +
Sbjct: 43 GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 102
Query: 593 DLSLQVL 599
L V+
Sbjct: 103 TYQLDVV 109
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 161 SVTLECVVSGVPTPDIKW------YKDDSLIKGRNITYENNVARFTVVNCS--ESSEGRY 212
+V +C SG P P ++W +K D I G + Y A ++++ S S +G Y
Sbjct: 34 TVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY----ATWSIIMDSVVPSDKGNY 89
Query: 213 TCKATNEAGT 222
TC NE G+
Sbjct: 90 TCIVENEYGS 99
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 134 VVVKAPVDAEAPVIQEPLK-DSVAGFQSSVTLECVVSGVPTPDIKWYK----DDSLIKGR 188
VV ++P P++Q L + S+V C V P P I+W K + S I
Sbjct: 108 VVERSP---HRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPD 164
Query: 189 NITY------------ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N+ Y + + + N S G YTC A N G + S L V
Sbjct: 165 NLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E+K V T++ +P P++ W +N K P R G +
Sbjct: 20 EKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEF--KPDHR--IGGYKVRYATWS 75
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ ++ +D G+Y + NE GS H ++ V RP + +
Sbjct: 76 IIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 120
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 682 KTVKEKGTIRLMAKVKASPAPSIVWFRN-----------NKPLLSSPKKREI--FDGENI 728
KTV + M KV + P P I W ++ N P + K + D E
Sbjct: 125 KTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEME 184
Query: 729 ILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
+L L+ E DAG+Y +A N +G + H A +TV
Sbjct: 185 VLHLRNVSFE-DAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEI-TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E D + + T +I + SVV +D YT N GS +
Sbjct: 42 GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 593 DLSLQVL 599
L V+
Sbjct: 102 TYQLDVV 108
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 161 SVTLECVVSGVPTPDIKW------YKDDSLIKGRNITYENNVARFTVVNCS--ESSEGRY 212
+V +C SG P P ++W +K D I G + Y A ++++ S S +G Y
Sbjct: 33 TVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY----ATWSIIMDSVVPSDKGNY 88
Query: 213 TCKATNEAGT 222
TC NE G+
Sbjct: 89 TCIVENEYGS 98
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 134 VVVKAPVDAEAPVIQEPLK-DSVAGFQSSVTLECVVSGVPTPDIKWYK----DDSLIKGR 188
VV ++P P++Q L + S+V C V P P I+W K + S I
Sbjct: 107 VVERSP---HRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPD 163
Query: 189 NITY------------ENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
N+ Y + + + N S G YTC A N G + S L V
Sbjct: 164 NLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E+K V T++ +P P++ W +N K P R G +
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEF--KPDHR--IGGYKVRYATWS 74
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ ++ +D G+Y + NE GS H ++ V RP + +
Sbjct: 75 IIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQA 119
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 306 VEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVI 365
V SK P V A F+ E ++V+W + G +I S ++ + + GT+ L +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTV 67
Query: 366 KRVTQDDETDIGVLALNVKSVSKLKWLD 393
+ V D+ V+A + K LK ++
Sbjct: 68 REVGPADQGSYAVIAGSSKVKFDLKVIE 95
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL--------ESHD-KDEF 88
VT++S G P T + ++W+PP + + +TGY++ E HD E
Sbjct: 112 VTVVSKEGKPKT----------IIVNWQPP-SEANGKITGYIIYYSTDVNAEIHDWVIEP 160
Query: 89 MVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKA 138
+V N++ T+++ +LT Y F++ A N+ G GP S ++ KA
Sbjct: 161 VVGNRL-----THQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 205
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 62 LHWRPPQDDGHSPVTGYVLES--HDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAV 119
L WRPP G + GY++E +E++ NK + V L T +FRV V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 120 NAIG 123
N G
Sbjct: 87 NIAG 90
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
P ++WYKD + NI + R V+N +E G YTC A+ + T +++
Sbjct: 141 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 200
Query: 234 KEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293
++E+ R +++ + E D+G S+++ + T L A
Sbjct: 201 ITLEENK--------PTRPVIVSPANETMEVDLG---------SQIQLICNVTGQLSDIA 243
Query: 294 WFWW 297
++ W
Sbjct: 244 YWKW 247
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
P ++WYKD + NI + R V+N +E G YTC A+ + T +++
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 234 KEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293
++E+ R +++ + E D+G S+++ + T L A
Sbjct: 199 ITLEENK--------PTRPVIVSPANETMEVDLG---------SQIQLICNVTGQLSDIA 241
Query: 294 WFWW 297
++ W
Sbjct: 242 YWKW 245
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
P ++WYKD + NI + R V+N +E G YTC A+ + T +++
Sbjct: 136 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 195
Query: 234 KEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293
++E+ R +++ + E D+G S+++ + T L A
Sbjct: 196 ITLEENK--------PTRPVIVSPANETMEVDLG---------SQIQLICNVTGQLSDIA 238
Query: 294 WFWW 297
++ W
Sbjct: 239 YWKW 242
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
P ++WYKD + NI + R V+N +E G YTC A+ + T +++
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 234 KEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293
++E+ R +++ + E D+G S+++ + T L A
Sbjct: 199 ITLEENK--------PTRPVIVSPANETMEVDLG---------SQIQLICNVTGQLSDIA 241
Query: 294 WFWW 297
++ W
Sbjct: 242 YWKW 245
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFID--EETSTIAIYSVVRADTSTYTVTATN 585
V + G P PE++W G +I + R I+ ++ +T+ I V + D YT++ N
Sbjct: 25 VACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN 84
Query: 586 AAGSTSLDLSLQV 598
GS S +++ +
Sbjct: 85 EFGSDSATVNIHI 97
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLS 42
+D TL I+ + +D G YT+SL N G SAT + + S
Sbjct: 60 DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 162 VTLECVVSGVPTPDIKW----YKDDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKA 216
+T+ C +G PTP++ W K S +GR +I +++ +++ + G YT
Sbjct: 23 LTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82
Query: 217 TNEAGT 222
NE G+
Sbjct: 83 GNEFGS 88
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 528 VEVKYFGFPRPEISWMKNGAEITDSKACRIFID--EETSTIAIYSVVRADTSTYTVTATN 585
V + G P PE++W G +I + R I+ ++ +T+ I V + D YT++ N
Sbjct: 27 VACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN 86
Query: 586 AAGSTSLDLSLQV 598
GS S +++ +
Sbjct: 87 EFGSDSATVNIHI 99
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLS 42
+D TL I+ + +D G YT+SL N G SAT + + S
Sbjct: 62 DDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 162 VTLECVVSGVPTPDIKW----YKDDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKA 216
+T+ C +G PTP++ W K S +GR +I +++ +++ + G YT
Sbjct: 25 LTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 84
Query: 217 TNEAGTAETSCTLLVQ 232
NE G+ + + ++
Sbjct: 85 GNEFGSDSATVNIHIR 100
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 46 APDTPEIVGRSDSSVTLHWRPPQ---DDGHSPVTGYVLESH--DKDEFMVWNKIETTSTT 100
AP + R+ S+ +HW+PP +G +TGY + + + + T +
Sbjct: 21 APQNLSLEVRNSKSIMIHWQPPAPATQNGQ--ITGYKIRYRKASRKSDVTETLVSGTQLS 78
Query: 101 YEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+ L EY FRVAA+ GTGPA+
Sbjct: 79 QLIEGLDRGTEYNFRVAALTINGTGPAT 106
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 142 AEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW-YKDDSLIKGR--NITYENNVA 197
+ PV QE LKD + TL CV+S V P +KW Y ++ L G ++ E +
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAML 63
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
V N GRY+C ++ +A + T L G
Sbjct: 64 ELVVRNLRPQDSGRYSCSFGDQTTSATLTVTALPSG 99
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 161 SVTLECVVSGVPTPDIKWYK-----DDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 215
+ T+ C SG P P+I W+K D S GR + + + E+ +G+Y C
Sbjct: 125 TATMLCAASGNPDPEITWFKDFLPVDPSTSNGR--IKQLRSGGLQIESSEETDQGKYECV 182
Query: 216 ATNEAGTAETS 226
A+N AG +S
Sbjct: 183 ASNSAGVRYSS 193
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDA 741
K V+ T ++ +P P I WF++ P+ S I + L++ E+ ETD
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQI-ESSEETDQ 176
Query: 742 GDYKVVATNELG 753
G Y+ VA+N G
Sbjct: 177 GKYECVASNSAG 188
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILE 731
P+FI++ ++ G + + P P + W + K + S + FD +L
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDI 778
++ + D Y+ VA N G T A++TV E P +ID+
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDM 113
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G P+P ++W K G ++ + I DE + +R D + Y A N G +
Sbjct: 32 GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVT 91
Query: 592 LDLSLQVL 599
+ L VL
Sbjct: 92 VHAKLTVL 99
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730
AP R V R + V++ P + W+ N L S K + + +L
Sbjct: 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIH--YTNTSGVL 64
Query: 731 ELKEADSET-DAGDYKVVATNELGSATHGARVTVDV 765
L+ D T D+G Y+ V TN G A+ A T+DV
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYA--TLDV 98
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEET 563
P I L ++S R+ + + P E+ W NG E+ +S
Sbjct: 7 HAPRITL---RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 564 STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600
T+ I D+ TY TN G S +L V G
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 168 VSGVPTPDIKWYKDD-SLIKGRNITYEN--NVARFTVVNCSESSEGRYTCKATNEAGTAE 224
V PT ++KWY + L + I Y N V +++C G Y TN G A
Sbjct: 32 VQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEAS 91
Query: 225 TSCTLLVQGKE 235
TL V G +
Sbjct: 92 DYATLDVTGGD 102
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY-----ENNVARFTVVNC 204
P+K +V+ Q V L C V G PDI+W KD ++++ + Y ++ + ++ +
Sbjct: 9 PVKLTVSQGQP-VKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 67
Query: 205 SESSEGRYTCKATNEAGTAETS 226
S GRY C+ + G E S
Sbjct: 68 ERSDAGRYWCQ-VEDGGETEIS 88
>pdb|1WAA|E Chain E, Ig27 Protein Domain
Length = 93
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 324 ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383
A F++ELS PD+ +W KG+ + S I G + L++ ++ A N
Sbjct: 23 AHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEEGKKHILILHNCQLGMTGEVSFQAANT 82
Query: 384 KSVSKLK 390
KS + LK
Sbjct: 83 KSAANLK 89
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 30 GQASATTKVTLLSAPGAPDTPEIVGRSDS-SVTLHWRPPQDDGHSPVTGYVLESHDKDEF 88
G + T PG P P + G+ S S + W PP+D+G + + YV+E +
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 89 MVWNKIETTSTTYEVT-KLTTKHEYMFRVAAVNAIG 123
W I + +T + +L Y RV ++ G
Sbjct: 64 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGG 99
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLI--KGRNITYENNVARFTV 201
AP + LK VT C V+G P P I W+KD I K + T + ++
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 202 VNCSESS---EGRYTCKATNEAGTAETSCTLLVQG 233
++ + S+ +G YT A N G + L+VQ
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-----RE 721
GS G AP F + + + E + +V +P P I WF++ K + SPK +
Sbjct: 4 GSSG-APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI--SPKSDHYTIQR 60
Query: 722 IFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772
DG + A + D G+Y ++A N G + R+ V G S
Sbjct: 61 DLDGTCSL--HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSS 109
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA--DTSTYTVTATNAAGSTS 591
G P+P+I W K+G +I+ + T ++++ D YT+ A N G S
Sbjct: 34 GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93
Query: 592 LDLSLQV 598
L V
Sbjct: 94 CTGRLMV 100
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 326 FQVELSSPDIQVKWLKKGKEI--KESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383
+ E+S D VKW K G+EI +R+ I G + L+I+ T+ D + V+
Sbjct: 27 LECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG 86
Query: 384 KSVSKLKWLDFGSG 397
+S +KL +D SG
Sbjct: 87 QSSAKLS-VDLKSG 99
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 667 GSPGQAPLFIERFEEKTVKEKGT-IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-- 723
GS G + + + + E T G + L +V A ++ WF+N + ++ PK R
Sbjct: 1 GSSGSSGIMVTKQLEDTTAYCGERVELECEVSEDDA-NVKWFKNGEEIIPGPKSRYRIRV 59
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766
+G+ IL + E ++ DA +Y V+ T S A+++VD++
Sbjct: 60 EGKKHIL-IIEGATKADAAEYSVMTTGGQSS----AKLSVDLK 97
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 540 ISWMKNGAEITDSKACR--IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597
+ W KNG EI R I ++ + + I +AD + Y+V T S L + L+
Sbjct: 38 VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDLK 97
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES--SEGRYTCKATN 218
+ TL+C + P +++WYK D+ GR T++ SE+ S GRYT AT
Sbjct: 19 NCTLQCNYTVSPFSNLRWYKQDT---GR------GPVSLTIMTFSENTKSNGRYT--ATL 67
Query: 219 EAGTAETSCTLLVQGKEIKESARHI--ITARG-TQRKLVIKRVTQ 260
+A T ++S L + ++ +SA +I ++ RG T +L R TQ
Sbjct: 68 DADTKQSS--LHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQ 110
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES--SEGRYTCKATN 218
+ TL+C + P +++WYK D+ GR T++ SE+ S GRYT AT
Sbjct: 20 NCTLQCNYTVSPFSNLRWYKQDT---GR------GPVSLTIMTFSENTKSNGRYT--ATL 68
Query: 219 EAGTAETSCTLLVQGKEIKESARHI--ITARG-TQRKLVIKRVTQ 260
+A T ++S L + ++ +SA +I ++ RG T +L R TQ
Sbjct: 69 DADTKQSS--LHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQ 111
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 42 SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT---- 97
S P P++ RS + ++W P +G + VT Y LE W +E +
Sbjct: 6 SGPDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLE---------WGGVEGSMQIC 55
Query: 98 ----STTYEVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+YE+ L+ Y RV A++ +G GP S
Sbjct: 56 YCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFS 90
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 134 VVVKAPVDAEAP----VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-- 187
+V+ P+ + AP ++Q+PL+ VA +++L C G P P +WYK I+G
Sbjct: 207 LVITEPISSSAPRTPALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYK---FIEGTT 260
Query: 188 --RNITYENNVARFT----VVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + + V + + + + G+Y C N G L V
Sbjct: 261 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES--SEGRYTCKATN 218
+ TL+C + P +++WYK D+ GR T++ SE+ S GRYT AT
Sbjct: 17 NCTLQCNYTVSPFSNLRWYKQDT---GR------GPVSLTIMTFSENTKSNGRYT--ATL 65
Query: 219 EAGTAETSCTLLVQGKEIKESARHI--ITARG-TQRKLVIKRVTQ 260
+A T ++S L + ++ +SA +I ++ RG T +L R TQ
Sbjct: 66 DADTKQSS--LHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQ 108
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES--SEGRYTCKATN 218
+ TL+C + P +++WYK D+ GR T++ SE+ S GRYT AT
Sbjct: 20 NCTLQCNYTVSPFSNLRWYKQDT---GR------GPVSLTIMTFSENTKSNGRYT--ATL 68
Query: 219 EAGTAETSCTLLVQGKEIKESARHI--ITARG-TQRKLVIKRVTQ 260
+A T ++S L + ++ +SA +I ++ RG T +L R TQ
Sbjct: 69 DADTKQSS--LHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQ 111
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSES--SEGRYTCKATN 218
+ TL+C + P +++WYK D+ GR T++ SE+ S GRYT AT
Sbjct: 17 NCTLQCNYTVSPFSNLRWYKQDT---GR------GPVSLTIMTFSENTKSNGRYT--ATL 65
Query: 219 EAGTAETSCTLLVQGKEIKESARHI--ITARG-TQRKLVIKRVTQ 260
+A T ++S L + ++ +SA +I ++ RG T +L R TQ
Sbjct: 66 DADTKQSS--LHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQ 108
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 134 VVVKAPVDAEAP----VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-- 187
+V+ P+ + AP ++Q+PL+ VA +++L C G P P +WYK I+G
Sbjct: 201 LVITEPISSSAPRTPALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYK---FIEGTT 254
Query: 188 --RNITYENNVARFT----VVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + + V + + + + G+Y C N G L V
Sbjct: 255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
>pdb|2RQ8|A Chain A, Solution Nmr Structure Of Titin I27 Domain Mutant
Length = 98
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 306 VEFLSKLPSVTLVPHLGD-ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLV 364
+E LP V + +G+ A F++ELS PD+ +W KG+ + S I G + L+
Sbjct: 3 IEVEKPLPGVEVF--VGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILI 60
Query: 365 IKRVTQDDETDIGVLALNVKSVSKLK 390
+ ++ A N KS + LK
Sbjct: 61 LHNCQLGMTGEVSFQAANTKSAANLK 86
>pdb|1WAA|A Chain A, Ig27 Protein Domain
pdb|1WAA|B Chain B, Ig27 Protein Domain
pdb|1WAA|C Chain C, Ig27 Protein Domain
pdb|1WAA|D Chain D, Ig27 Protein Domain
Length = 93
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 324 ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383
A F++ELS PD+ +W KG+ + S I G + L++ ++ A N
Sbjct: 23 AHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT 82
Query: 384 KSVSKLK 390
KS + LK
Sbjct: 83 KSAANLK 89
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHD--KDEFMVWNKIETTSTTYEVT 104
P P + + +VTL W P+ G +T Y++E D ++ N + V+
Sbjct: 14 PGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVS 73
Query: 105 KLTTKHEYMFRVAAVNAIGT-GPASHNTRYVVVKAPVDA 142
LT Y FRV A NA G P S + + + V+A
Sbjct: 74 GLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDY 744
E + + +V A P+ +I WFR+ + L SS +I++ + DSE D G+Y
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 91
Query: 745 KVVATNELGSATHGARVTVDVEKVGRPSINSID 777
A N +G + + V + PSI+ ++
Sbjct: 92 NCTAVNRIGQESL-EFILVQADTPSSPSIDQVE 123
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 144 APVIQEPLKDSVAGFQSS-VTLECVVSGVPTPDIKWYKDDSLIKGRNIT----YENNVAR 198
AP +Q P+ +V ++ + V + C V P+ I W++D L+ N + Y A
Sbjct: 19 APKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 199 FTVVNC-SESSEGRYTCKATNEAGTAETSCTLLVQ 232
+ V SE+ G Y C A N G E+ +LVQ
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQ 110
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 8 LTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPP 67
L + + D G+Y + N +GQ S + P +P ++ S S+ + + P
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYS-STAQVQFDEP 136
Query: 68 QDDGHSPVTGYVLESHDKDE---FMVWNKIETTSTTYEVTKLTTKHE--YMFRVAAVNAI 122
+ G P+ Y E E W + S VT + K E Y R+AA+N
Sbjct: 137 EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGK 196
Query: 123 GTGPASHNTRY 133
G G S + +
Sbjct: 197 GLGEISAASEF 207
>pdb|1TIT|A Chain A, Titin, Ig Repeat 27, Nmr, Minimized Average Structure
pdb|1TIU|A Chain A, Titin, Ig Repeat 27, Nmr, 24 Structures
Length = 98
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 324 ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383
A F++ELS PD+ +W KG+ + S I G + L++ ++ A N
Sbjct: 28 AHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA 87
Query: 384 KSVSKLK 390
KS + LK
Sbjct: 88 KSAANLK 94
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 142 AEAPV-IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKW-YKDDSLIKGRNITYENNVARF 199
+ PV QE LKD + TL CV+S V P +KW Y ++ L G + A
Sbjct: 5 SSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXL 63
Query: 200 TVV--NCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
+V N GRY+C ++ +A + T L G
Sbjct: 64 ELVVRNLRPQDSGRYSCSFGDQTTSATLTVTALPSG 99
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATF--QVELSSPDIQVKWLKKGKEIKESARHI 353
+W S++ P F+ K P T V A F +V SSP + V W K +E+K+S +++
Sbjct: 369 FWDRSEAQP--RFIVK-PYGTEVGEGQSANFYCRVIASSPPV-VTWHKDDRELKQSVKYM 424
Query: 354 ITSRGTQRKLVIKRVTQDDETDIGVLALN 382
G L I RV DD+ + V A N
Sbjct: 425 KRYNGNDYGLTINRVKGDDKGEYTVRAKN 453
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILEL 732
P FI + V E + +V AS P + W ++++ L S K + ++G + L +
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 733 KEADSETDAGDYKVVATNELGS 754
+ D G+Y V A N G+
Sbjct: 437 NRVKGD-DKGEYTVRAKNSYGT 457
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVA 197
+A+ I +P V QS+ C V P + W+KDD +K Y N
Sbjct: 374 EAQPRFIVKPYGTEVGEGQSA-NFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 432
Query: 198 RFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
T+ +G YT +A N GT E L V
Sbjct: 433 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 24 SLSNALGQASATTKVTLLSAPGAPDTP------EIVGRSDSSVTLHWRPPQDDGHSP-VT 76
S N G +T +T+++ P P E+V + S+ + W PP + +T
Sbjct: 5 SSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVV--NSRSIKVSWLPPPSGTQNGFIT 62
Query: 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129
GY + +E + Y T L +Y F+V+A+ GTGP S+
Sbjct: 63 GYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSN 115
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 598 VLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653
+ GY I+ ++ + + ++ TL+P+ L Y L S+Y FQV A G GP +
Sbjct: 61 ITGYKIRHRK--TTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--------GRNITYENNV 196
P I E D + TL C G PTP I+WYK ++ R + ++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 197 ARFTVVNCSES--SEGRYTCKATNEAGTA 223
+V+ +S EG Y C A N G A
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 153 DSVAGFQSSVTLEC-VVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGR 211
D + +EC G P P I W KD S + ++ + + +S G+
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGK 179
Query: 212 YTCKATNEAGTAETSCTLL 230
Y C TN G E+ L
Sbjct: 180 YVCVGTNMVGERESEVAEL 198
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588
G P P ISW K+G+ + D K RI I + I ++D Y TN G
Sbjct: 138 GHPEPTISWKKDGSPL-DDKDERITI--RGGKLMITYTRKSDAGKYVCVGTNMVG 189
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 697 KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753
+ P P+I W ++ PL ++ I G+ +I + ++DAG Y V TN +G
Sbjct: 137 RGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR----KSDAGKYVCVGTNMVG 189
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 211 RYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
YTC NE G+ + L ++ E +RH
Sbjct: 90 NYTCVVENEYGSINHTYHL-----DVVERSRH 116
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 593 DLSLQVL 599
L V+
Sbjct: 105 TYHLDVV 111
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 22 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 77
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRP 771
+ E+ +D G+Y V NE GS H + V RP
Sbjct: 78 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRP 118
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
++ L + + D G+Y +SN +GQA+ + +T+L AP
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 145 PVIQEPL---KDSVAGFQSSVTLECVVSGVPTPDIKW----------YKDDSL-----IK 186
P++Q L +V G V C V P I+W Y D L +K
Sbjct: 118 PILQAGLPANASTVVG--GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 187 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
I +N + N +E+ G Y CK +N G A S L V K+
Sbjct: 176 HSGIN-SSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
GAP P + +W PP Y ++ + E + +++ + E+T
Sbjct: 7 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHL---LDSKVPSVELT 63
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT- 163
L +Y +V A A G GP S +V E P EP + + S+VT
Sbjct: 64 NLYPYCDYEMKVCAYGAQGEGPYSS-----LVSCRTHQEVP--SEPGRLAFNVVSSTVTQ 116
Query: 164 LECVVSGVPTPDIKWYK-------DDSLIKG--RNITYENNVARFTVV-NCSESSEGRYT 213
L +I Y+ DD+ G + + +N R ++ N ES RYT
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 214 CKATNEAG 221
KA N AG
Sbjct: 177 VKARNGAG 184
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
KV +P +ENLR+ Y + V A N G GPE ++ LAT
Sbjct: 149 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA-IINLATQ 198
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 79
Query: 211 RYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
YTC NE G+ + L ++ E +RH
Sbjct: 80 NYTCVVENEYGSINHTYHL-----DVVERSRH 106
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 35 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 593 DLSLQVL 599
L V+
Sbjct: 95 TYHLDVV 101
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 12 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 67
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ E+ +D G+Y V NE GS H + V RP + +
Sbjct: 68 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 112
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 593 DLSLQVL 599
L V+
Sbjct: 105 TYHLDVV 111
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 211 RYTCKATNEAGTAETSCTLLV 231
YTC NE G+ + L V
Sbjct: 90 NYTCVVENEYGSINHTYHLDV 110
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE----LKEADSETDAGDY 744
T++ +P P++ W +N K K+ G + + + E+ +D G+Y
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 91
Query: 745 KVVATNELGSATHGARVTVDVEKVGRP 771
V NE GS H + V RP
Sbjct: 92 TCVVENEYGSINHTYHLDVVERSPHRP 118
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
++ L + + D G+Y +SN +GQA+ + +T+L AP
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 24/120 (20%)
Query: 134 VVVKAPVDAEAPVIQEPL---KDSVAGFQSSVTLECVVSGVPTPDIKW----------YK 180
VV ++P P++Q L +V G V C V P I+W Y
Sbjct: 110 VVERSP---HRPILQAGLPANASTVVG--GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164
Query: 181 DDSL-----IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
D L +K I +N + N +E+ G Y CK +N G A S L V K+
Sbjct: 165 PDGLPYLKVLKHSGIN-SSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
GAP P + +W PP Y ++ + E + +++ + E+T
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHL---LDSKVPSVELT 59
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT- 163
L +Y +V A A G GP S +V E P EP + + S+VT
Sbjct: 60 NLYPYCDYEMKVCAYGAQGEGPYSS-----LVSCRTHQEVP--SEPGRLAFNVVSSTVTQ 112
Query: 164 LECVVSGVPTPDIKWYK-------DDSLIKG--RNITYENNVARFTVV-NCSESSEGRYT 213
L +I Y+ DD+ G + + +N R ++ N ES RYT
Sbjct: 113 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 172
Query: 214 CKATNEAG 221
KA N AG
Sbjct: 173 VKARNGAG 180
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
KV +P +ENLR+ Y + V A N G GPE ++ LAT
Sbjct: 145 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA-IINLATQ 194
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 300 SKSTPAVEFLSKLPSVTLVPHLGD-ATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSR 357
SK+T A L+K S+T+ + G+ A F + P V WL+KG+ + SARH +T+
Sbjct: 9 SKTTLAARILTKPRSMTV--YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 358 GTQRKLVIKRVTQDDETDIGVLALN 382
+ I V DE + V+ N
Sbjct: 67 KYKSTFEISSVQASDEGNYSVVVEN 91
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ++W++ G ++ S ++ + ST I SV +D Y+V N+ G +
Sbjct: 40 GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 99
Query: 594 LSLQV 598
+L +
Sbjct: 100 FTLTI 104
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742
TV E + R P P++ W R + L +S + + E+ + +D G
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEG 83
Query: 743 DYKVVATNELGSATHGARVTVDVEK 767
+Y VV N G A T+ ++K
Sbjct: 84 NYSVVVENSEGK--QEAEFTLTIQK 106
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 211 RYTCKATNEAGTAETSCTLLVQGKEIKESARH 242
YTC NE G+ + L ++ E +RH
Sbjct: 82 NYTCVVENEYGSINHTYHL-----DVVERSRH 108
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 593 DLSLQVL 599
L V+
Sbjct: 97 TYHLDVV 103
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 14 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 69
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ E+ +D G+Y V NE GS H + V RP + +
Sbjct: 70 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 114
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 599 LGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648
+ YI++ +E+ S + D L YTV+NLR ++Y F+V A NS G
Sbjct: 40 ISYILEMEEETS-GYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEG 88
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 593 DLSLQVL 599
L V+
Sbjct: 97 TYHLDVV 103
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 211 RYTCKATNEAGTAETSCTLLV 231
YTC NE G+ + L V
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 14 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 69
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTV 763
+ E+ +D G+Y V NE GS H + V
Sbjct: 70 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 102
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 593 DLSLQVL 599
L V+
Sbjct: 97 TYHLDVV 103
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 14 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 69
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ E+ +D G+Y V NE GS H + V RP + +
Sbjct: 70 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQA 114
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 211 RYTCKATNEAGTAETSCTLLV 231
YTC NE G+ + L V
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 36 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 593 DLSLQVL 599
L V+
Sbjct: 96 TYHLDVV 102
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 13 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 68
Query: 732 -LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
+ E+ +D G+Y V NE GS H + V RP + +
Sbjct: 69 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQA 113
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 80
Query: 211 RYTCKATNEAGTAETSCTLLV 231
YTC NE G+ + L V
Sbjct: 81 NYTCVVENEYGSINHTYHLDV 101
>pdb|1WAA|F Chain F, Ig27 Protein Domain
Length = 93
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 324 ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383
A F++ELS PD+ +W KG+ + S I G + L++ ++ A
Sbjct: 23 AHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAQT 82
Query: 384 KSVSKLK 390
KS + LK
Sbjct: 83 KSAANLK 89
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739
++ V E T++ + + P P+I+W K L+S+ + + LE++ A +
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ- 451
Query: 740 DAGDYKVVATNELGSATHGARVTV 763
D G Y +A N G+ + A + V
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHV 475
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
GAP P + +W PP Y ++ + E + +++ + E+T
Sbjct: 7 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHL---LDSKVPSVELT 63
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT- 163
L +Y +V A A G GP S +V E P EP + + S+VT
Sbjct: 64 NLYPYCDYEMKVCAYGAQGEGPYSS-----LVSCRTHQEVP--SEPGRLAFNVVSSTVTQ 116
Query: 164 LECVVSGVPTPDIKWYK-------DDSLIKG--RNITYENNVARFTVV-NCSESSEGRYT 213
L +I Y+ DD+ G + + +N R ++ N ES RYT
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 176
Query: 214 CKATNEAG 221
KA N AG
Sbjct: 177 VKARNGAG 184
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
KV +P +ENLR+ Y + V A N G GPE ++ LAT
Sbjct: 149 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA-IINLATQ 198
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593
G P P ++W++ G ++ S ++ + ST I SV +D Y+V N+ G +
Sbjct: 34 GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 93
Query: 594 LSLQV 598
+L +
Sbjct: 94 FTLTI 98
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 337 VKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382
V WL+KG+ + SARH +T+ + I V DE + V+ N
Sbjct: 40 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 85
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742
TV E + R P P++ W R + L +S + + E+ + +D G
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEG 77
Query: 743 DYKVVATNELGSATHGARVTVDVEK 767
+Y VV N G A T+ ++K
Sbjct: 78 NYSVVVENSEGK--QEAEFTLTIQK 100
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE------------SHDKDEF--MVWN 92
P P + SD SV L W P++DG P+ + ++ ++D + WN
Sbjct: 6 PTPPNVTRLSDESVXLRWXVPRNDGL-PIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKWN 64
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAV 119
S T VT L +H Y FR+ AV
Sbjct: 65 SELGKSFTASVTDLKPQHTYRFRILAV 91
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVT 104
GAP P + +W PP Y ++ + E + +++ + E+T
Sbjct: 6 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHL---LDSKVPSVELT 62
Query: 105 KLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVT- 163
L +Y +V A A G GP S +V E P EP + + S+VT
Sbjct: 63 NLYPYCDYEMKVCAYGAQGEGPYSS-----LVSCRTHQEVP--SEPGRLAFNVVSSTVTQ 115
Query: 164 LECVVSGVPTPDIKWYK-------DDSLIKG--RNITYENNVARFTVV-NCSESSEGRYT 213
L +I Y+ DD+ G + + +N R ++ N ES RYT
Sbjct: 116 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT 175
Query: 214 CKATNEAG 221
KA N AG
Sbjct: 176 VKARNGAG 183
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATH 663
KV +P +ENLR+ Y + V A N G GPE ++ LAT
Sbjct: 148 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA-IINLATQ 197
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 125 GPASHNTRYV--VVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
PA RY+ + ++ APVI EP D + L+C +G + W +
Sbjct: 291 APAGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPN 349
Query: 183 SLIKGRNITYENNVARFTVV--------NCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234
G +T+ + R +V+ N + G+YTC TN AG S TL V K
Sbjct: 350 ----GTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 320 HLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
L EL P +V+W K G+E+ ES ++ T R+LV+ V +D
Sbjct: 27 RLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLED 79
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--------RNITYENNV 196
P I E D + TL C G PTP I+WYK ++ R + ++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 197 ARFTVVNCSES--SEGRYTCKATNEAGTA 223
+V+ +S EG Y C A N G A
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 190 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233
ITYE+ VA V + ++ +G Y CK N+ G + L V+G
Sbjct: 51 ITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 382 NVKSVSKLKWLDFGSG-GWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440
+VK V K++ D + W+F + ++S + ITYE+ VA V + ++ +G Y C
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVRQLENS--EKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 441 KATNEAG 447
K N+ G
Sbjct: 76 KVVNDYG 82
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE------------SHDKDEF--MVWN 92
P P + SD SV L W P++DG P+ + ++ ++D + WN
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAV 119
S T VT L +H Y FR+ AV
Sbjct: 64 SELGKSFTASVTDLKPQHTYRFRILAV 90
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 59 SVTLHWRPPQDDGHSPVTGYVL-ESHDKD---EFMVWNKIETTSTTYEVTKLTTKHEYMF 114
+V + W+PP + + +T Y+L + DK+ + + I T+++ L Y F
Sbjct: 26 AVIVSWQPPLE-ANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYF 84
Query: 115 RVAAVNAIGTGPASHNTRYVVVKA 138
R+ A N+ G GP S + +K
Sbjct: 85 RIQARNSKGVGPLSDPILFRTLKV 108
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 47 PDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE------------SHDKDEF--MVWN 92
P P + SD SV L W P++DG P+ + ++ ++D + WN
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 93 KIETTSTTYEVTKLTTKHEYMFRVAAV 119
S T VT L +H Y FR+ AV
Sbjct: 64 SELGKSFTASVTDLKPQHTYRFRILAV 90
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 32/117 (27%)
Query: 30 GQASATTKVTLLSAPGAP-DTPEIVG---RSDSSVTLHWRPPQDDGHSPVTGYVLE---- 81
G + ++ + SA AP + P VG S S +++HW +VLE
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWE------------HVLEKIVE 48
Query: 82 --------SHDKDEFMVWNKIETTSTTY--EVTKLTTKHEYMFRVAAVNAIGTGPAS 128
+HDK+E N+++ TS Y + L +Y V A N+ G GP S
Sbjct: 49 SYQIRYWAAHDKEEAA--NRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPS 103
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 323 DATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
D + ELS V WLK K I++S ++ + GT LVI+ + D
Sbjct: 25 DVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKD 74
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVV 202
I +PL+D V L C +S TP + W KD I+ ++ E +A +
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIR 68
Query: 203 NCSESSEGRYTCKATNEAGTA 223
S G YTC+ TA
Sbjct: 69 GASLKDAGEYTCEVEASKSTA 89
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667
T P +LQ TV NL+ ++ Y F+V A N GP +++ + +AT G
Sbjct: 68 TTQPGSLQLTVGNLKPEAMYTFRVVAYNE--WGPGESSQPIKVATQPESG 115
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 60 VTLHWRPPQDDGHSPVTGYVLESHDKDEF-MVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118
V L WRPP + + T V S + D N + S V L + Y FRV A
Sbjct: 34 VRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVA 93
Query: 119 VNAIGTGPASH 129
N G G +S
Sbjct: 94 YNEWGPGESSQ 104
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
A+ G G P F+ R V L V P P +VW + + L +S +
Sbjct: 6 ASSGDQGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 65
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
DG L L A TDAG Y A N G A A VTV
Sbjct: 66 DGAEHGLLLTAA-LPTDAGVYVCRARNAAGEAYAAAAVTV 104
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 324 ATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ 370
AT E++ +V W K GK++ S++ + + G R+LV+++ Q
Sbjct: 29 ATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQ 75
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 329 ELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372
E+ D V+W K G+E++ES ++ + G R+LV+ D
Sbjct: 29 EVDREDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSD 72
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT 97
+T PG P + S++S+ L W PP+ D + Y L D +
Sbjct: 12 ITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEP 68
Query: 98 STTYEVTKLTTKHEYMFRVAAVNAIGTG 125
T+Y + L Y FR+AA + G G
Sbjct: 69 GTSYRLQGLKPNSLYYFRLAARSPQGLG 96
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659
T++P T Y ++ L+ S YYF++ A + GLG +T E+ A
Sbjct: 65 TIEPGT-SYRLQGLKPNSLYYFRLAARSPQGLG-ASTAEISA 104
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P W+KNG E + + + ++ SVV +D YT N GS +
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 103
Query: 593 DLSLQVL 599
L V+
Sbjct: 104 TYHLDVV 110
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P +W K+ G+ E+ + + V N S +G
Sbjct: 34 NTVKFRCPAGGNPXPTXRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 211 RYTCKATNEAGTAETSCTLLV 231
YTC NE G+ + L V
Sbjct: 89 NYTCVVENEYGSINHTYHLDV 109
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE----LKEADSETDAGDY 744
T++ +P P+ W +N K K+ G + + + E+ +D G+Y
Sbjct: 35 TVKFRCPAGGNPXPTXRWLKNGKEF----KQEHRIGGYKVRNQHWSLIXESVVPSDKGNY 90
Query: 745 KVVATNELGSATHGARVTVDVEKVGRP 771
V NE GS H + V RP
Sbjct: 91 TCVVENEYGSINHTYHLDVVERSPHRP 117
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
++ L + + D G+Y +SN +GQA+ + +T+L AP
Sbjct: 182 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 225
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 24/120 (20%)
Query: 134 VVVKAPVDAEAPVIQEPL---KDSVAGFQSSVTLECVVSGVPTPDIKW----------YK 180
VV ++P P++Q L +V G V C V P I+W Y
Sbjct: 109 VVERSP---HRPILQAGLPANASTVVG--GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 163
Query: 181 DDSL-----IKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235
D L +K I +N + N +E+ G Y CK +N G A S L V K+
Sbjct: 164 PDGLPYLKVLKHSGIN-SSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 222
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 332 SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETD 375
S +I KW K G ++ES R + +G KLVI +DE D
Sbjct: 32 SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 211 RYTCKATNEAGT 222
YTC NE G+
Sbjct: 83 NYTCVVENEYGS 94
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 38 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 97
Query: 593 DLSLQVL 599
L V+
Sbjct: 98 TYHLDVV 104
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 15 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 70
Query: 732 -LKEADSETDAGDYKVVATNELGSATH 757
+ E+ +D G+Y V NE GS H
Sbjct: 71 LIMESVVPSDKGNYTCVVENEYGSINH 97
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 211 RYTCKATNEAGT 222
YTC NE G+
Sbjct: 79 NYTCVVENEYGS 90
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 593 DLSLQVL 599
L V+
Sbjct: 94 TYHLDVV 100
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 11 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 66
Query: 732 -LKEADSETDAGDYKVVATNELGSATH 757
+ E+ +D G+Y V NE GS H
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYGSINH 93
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 48 DTPEIVGRSD---SSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIETTSTTYE 102
D+P SD +S T+HW P+ +P+TGY++ H + +++ + +
Sbjct: 3 DSPTGFDSSDITANSFTVHWVAPR----APITGYIIRHHAEHSVGRPRQDRVPPSRNSIT 58
Query: 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAE 143
+T L EY+ + AVN P + V P D E
Sbjct: 59 LTNLNPGTEYVVSIIAVNGREESPPLIGQQATVSDIPRDLE 99
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 669 PGQAPLFI--ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD 724
P AP + E+ E++ V T++ +P P+ W +N K K+
Sbjct: 4 PEGAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEF----KQEHRIG 59
Query: 725 GENIILE----LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINS 775
G + + + E+ +D G+Y V NE GS H + V RP + +
Sbjct: 60 GYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQA 114
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P W+KNG E + + + ++ SVV +D YT N GS +
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 96
Query: 593 DLSLQVL 599
L V+
Sbjct: 97 TYHLDVV 103
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P +W K+ G+ E+ + + V N S +G
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 211 RYTCKATNEAGT 222
YTC NE G+
Sbjct: 82 NYTCVVENEYGS 93
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN---------CSESSEG 210
++V C G P P ++W K+ G+ E+ + + V N S +G
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKN-----GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 211 RYTCKATNEAGT 222
YTC NE G+
Sbjct: 84 NYTCVVENEYGS 95
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592
G P P + W+KNG E + + + ++ + SVV +D YT N GS +
Sbjct: 39 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 98
Query: 593 DLSLQVL 599
L V+
Sbjct: 99 TYHLDVV 105
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 677 ERFEEK--TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE--- 731
E+ E++ V T++ +P P++ W +N K K+ G + +
Sbjct: 16 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF----KQEHRIGGYKVRNQHWS 71
Query: 732 -LKEADSETDAGDYKVVATNELGSATH 757
+ E+ +D G+Y V NE GS H
Sbjct: 72 LIMESVVPSDKGNYTCVVENEYGSINH 98
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETS---TIAIYSVVRADTSTY 579
W + G P+P + W NGA + +SK +I + T + + + + Y
Sbjct: 18 HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 77
Query: 580 TVTATNAAGSTSLDLSLQVLGY 601
T+ A N G +S +G+
Sbjct: 78 TLIAKNEYGKDEKQISAHFMGW 99
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE- 731
P + EE ++ + I + V+ +P P++ W N +PL S + E I E
Sbjct: 8 PPRVVSLEEPELRLEHCIEFV--VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 732 --LKEADSETDAGDYKVVATNELGSATH 757
L + + G+Y ++A N LG+A
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQ 93
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 525 QWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETS---TIAIYSVVRADTSTY 579
W + G P+P + W NGA + +SK +I + T + + + + Y
Sbjct: 18 HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDY 77
Query: 580 TVTATNAAGSTSLDLSLQVLGY 601
T+ A N G +S +G+
Sbjct: 78 TLIAKNEYGKDEKQISAHFMGW 99
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 506 PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETST 565
P I+L ++ V Q + V + G PRP++ W K GA + D+ + + +
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL-DTSRVHVRTSDFDTV 80
Query: 566 IAIYSVVRADTSTYTVT 582
+ R+D+ Y ++
Sbjct: 81 FFVRQAARSDSGEYELS 97
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 164 LECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE------------GR 211
+ C G P P+ W K ++ G N+ RF ++N +E G
Sbjct: 112 MYCKSVGYPHPEWMWRKKEN---GVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGE 168
Query: 212 YTCKATNEAGTAETSCTLLVQ 232
Y C ATN G+A S L V+
Sbjct: 169 YECNATNSIGSASVSTVLRVR 189
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 573 RADTSTYTVTATNAAGSTSLDLSLQ--------VLGYIIQQQEKNSLKFTKVATLDPSTL 624
+A S V AG TS+ L Q +L Y I+ EK+ + +TL T
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK-EMQSYSTLKAVTT 66
Query: 625 QYTVENLRDKSEYYFQVFAENSVGLG 650
+ TV L+ + Y FQV A S G G
Sbjct: 67 RATVSGLKPGTRYVFQVRARTSAGCG 92
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 42 SAPGAPDTPE-----IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET 96
S PD P + ++ + HW PP H + Y++E + + +W
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHT-HGLIREYIVE-YSRSGSKMWASQRA 60
Query: 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125
S E+ L Y RVAAV + G G
Sbjct: 61 ASNFTEIKNLLVNTLYTVRVAAVTSRGIG 89
>pdb|2D3V|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor A5
(Lilra5LIR9ILT11)
Length = 196
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 414 RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465
+N N ARF++ + +E GRY C + AG +E P PL +VV+
Sbjct: 49 QNPLEPKNKARFSIPSXTEHHAGRYRCYYYSPAGWSE-----PSDPLELVVT 95
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
+A SV+L C +G +P W DS + G+ +T E + T+ S +E Y
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-VTNEGTTSTLTMNPVSFGNEHSYL 70
Query: 214 CKATNEAGTAE 224
C AT E+ E
Sbjct: 71 CTATCESRKLE 81
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
+A SV+L C +G +P W DS + G+ +T E + T+ S +E Y
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-VTNEGTTSTLTMNPVSFGNEHSYL 70
Query: 214 CKATNEAGTAE 224
C AT E+ E
Sbjct: 71 CTATCESRKLE 81
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 155 VAGFQSSVTLECVVSGVPTPDIKWYKD-DSLIKGRNITYENNVARFTVVNCSESSEGRYT 213
+A SV+L C +G +P W DS + G+ +T E + T+ S +E Y
Sbjct: 12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-VTNEGTTSTLTMNPVSFGNEHSYL 70
Query: 214 CKATNEAGTAE 224
C AT E+ E
Sbjct: 71 CTATCESRKLE 81
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 657 LVALATHATLGSPGQA-----PLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNN 710
LV L + PG P F+E E++TV L + + P P ++W ++
Sbjct: 86 LVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDA 145
Query: 711 KPLLSSP 717
PL ++P
Sbjct: 146 VPLATAP 152
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 45 GAPDTPE---IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESH--DKDEFMVWNKIETTST 99
G PDTP +S+ + W+ P+ + P+ GY +E + E N T
Sbjct: 16 GVPDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQT 73
Query: 100 TYEVTKLTTKHEYMFRVAAVNAIGTG 125
+ V L H Y+FRV A + G G
Sbjct: 74 SVVVEDLLPNHSYVFRVRAQSQEGWG 99
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 575 DTSTYTVTATNAAGSTSLDLSLQ-------VLGYIIQQQEKNSLKFTKVATLDPSTLQYT 627
DT T V + A G TSL +S Q + GY ++ Q N + ++ +P+
Sbjct: 19 DTPTRLVFS--ALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVV 76
Query: 628 VENLRDKSEYYFQVFAENSVGLGPE 652
VE+L Y F+V A++ G G E
Sbjct: 77 VEDLLPNHSYVFRVRAQSQEGWGRE 101
>pdb|1WFO|A Chain A, The Eighth Fn3 Domain Of Human Sidekick-2
Length = 130
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658
V L PS QYT L+ +S Y F++ A+ G G EA LV
Sbjct: 77 VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWG-EAAEALV 118
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKH 110
+ V S +S+ + W PP + PV GY L + N IE +Y++ L
Sbjct: 15 QAVSTSPTSILITWEPPA-YANGPVQGYRLFCTEVSTGKEQN-IEVDGLSYKLEGLKKFT 72
Query: 111 EYMFRVAAVNAIGTG 125
EY R A N G G
Sbjct: 73 EYSLRFLAYNRYGPG 87
>pdb|1I3Q|H Chain H, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|H Chain H, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|H Chain H, Rna Polymerase Ii Elongation Complex
pdb|1K83|H Chain H, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|H Chain H, Wild Type Rna Polymerase Ii
pdb|1NT9|H Chain H, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|H Chain H, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|H Chain H, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|H Chain H, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|H Chain H, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|H Chain H, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|H Chain H, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|H Chain H, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|H Chain H, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|H Chain H, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|H Chain H, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|H Chain H, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|H Chain H, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|H Chain H, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|H Chain H, 12-Subunit Rna Polymerase Ii
pdb|2E2H|H Chain H, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With
Gtp
pdb|2E2I|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dgtp
pdb|2E2J|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dutp
pdb|2NVY|H Chain H, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|H Chain H, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex A
pdb|2JA6|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex B
pdb|2JA7|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
pdb|2JA7|T Chain T, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
pdb|2JA8|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex D
pdb|2YU9|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|1A1D|A Chain A, Yeast Rna Polymerase Subunit Rpb8, Nmr, Minimized
Average Structure, Alpha Carbons Only
pdb|2R7Z|H Chain H, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|H Chain H, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|H Chain H, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|H Chain H, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|H Chain H, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|H Chain H, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|H Chain H, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|H Chain H, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|H Chain H, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|H Chain H, Backtracked Rna Polymerase Ii Complex With 13mer With
G<>u Mismatch
pdb|3GTM|H Chain H, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|H Chain H, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|H Chain H, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|H Chain H, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|I Chain I, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|H Chain H, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
pdb|3HOU|T Chain T, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
pdb|3HOV|H Chain H, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|H Chain H, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|H Chain H, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|H Chain H, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|H Chain H, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|H Chain H, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|H Chain H, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|H Chain H, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|H Chain H, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|H Chain H, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|H Chain H, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|H Chain H, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|H Chain H, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|H Chain H, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|H Chain H, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|H Chain H, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|H Chain H, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|H Chain H, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|H Chain H, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Atp
pdb|3S1R|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Gtp
pdb|3S2D|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|H Chain H, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|3J0K|H Chain H, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid
pdb|4A3B|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid
pdb|4A3D|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid
pdb|4A3E|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid
pdb|4A3L|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid
pdb|4A3I|H Chain H, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|H Chain H, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|H Chain H, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|H Chain H, Structure Of An Initially Transcribing Rna Polymerase
Ii- Tfiib Complex
Length = 146
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 20 DYTISLSNALGQASATTKVTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78
D + L Q S T VT+ S+ DTP +DSS T WRPPQ S Y
Sbjct: 41 DINVELFPVAAQDSLT--VTIASSLNLEDTPA----NDSSATRSWRPPQAGDRSLADDY 93
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 25/101 (24%)
Query: 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGY-------------VLESHD 84
+ L P +P +I+ S ++ + + P G P+ Y ++ SH
Sbjct: 12 LALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHG 71
Query: 85 KDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTG 125
+V N +E +TTYE+ RVAAVN G G
Sbjct: 72 VQTMVVLNNLEP-NTTYEI-----------RVAAVNGKGQG 100
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 534 GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578
GFP P +SW++NG E+ ++ + D ET A+ S + + +T
Sbjct: 133 GFPEPHLSWLENGEEL-NAINTTVSQDPETELYAVSSKLDFNMTT 176
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 534 GFPRPEISWMKNGAEI 549
GFP P +SW++NG E+
Sbjct: 133 GFPEPHLSWLENGEEL 148
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650
T P +Q T++NL + Y F+V A+N G G
Sbjct: 69 TSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSG 101
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 37/172 (21%)
Query: 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYE 193
V++ +AP I PL S ++ + L C + P W+ N T++
Sbjct: 195 VILNVLYGPDAPTI-SPLNTSYRSGEN-LNLSCHAASNPPAQYSWFV--------NGTFQ 244
Query: 194 NNVARFTVVNCSESSEGRYTCKATN-EAGTAETSCTLLVQGKEIKESARHIITARGTQRK 252
+ + N + ++ G YTC+A N + G T+ T IT K
Sbjct: 245 QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT--------------TITVYAEPPK 290
Query: 253 LVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304
I + D +AL + ++++T + WW ++S P
Sbjct: 291 PFITSNNSNPVEDEDAVALTCE------------PEIQNTTYLWWVNNQSLP 330
>pdb|4FAK|A Chain A, Crystal Structure Of Orfx In Complex With
S-adenosylmethionine
Length = 163
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693
K +Y+ Q AE LGP +++ + +AP + E + VKEK R++
Sbjct: 16 KEKYWKQAIAEYEKRLGPYTKIDIIEVPDE-------KAPENMSDKEIEQVKEKEGQRIL 68
Query: 694 AKVKASPAPSIVWFRNNKPLLSS 716
AK+K P +++ +LSS
Sbjct: 69 AKIK--PQSTVITLEIQGKMLSS 89
>pdb|1VH0|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|B Chain B, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|C Chain C, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|D Chain D, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|E Chain E, Crystal Structure Of A Hypothetical Protein
pdb|1VH0|F Chain F, Crystal Structure Of A Hypothetical Protein
Length = 161
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693
K +Y+ Q AE LGP +++ + +AP + E + VKEK R++
Sbjct: 14 KEKYWKQAIAEYEKRLGPYTKIDIIEVPDE-------KAPENMSDKEIEQVKEKEGQRIL 66
Query: 694 AKVKASPAPSIVWFRNNKPLLSS 716
AK+K P +++ +LSS
Sbjct: 67 AKIK--PQSTVITLEIQGKMLSS 87
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAP 47
E+ + LTI+ + G YT+ + N LG A +T++ P P
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 57 DSSVTLHWRPPQDDGHSPVTGYVL--ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMF 114
D+S+ + W+ P + + +TGY + E +++ V + + + Y VT LT Y
Sbjct: 31 DTSLKVSWQEPGEK-NGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTI 89
Query: 115 RVAAVNAIGTGPASHNT 131
VAA+ + G G S +T
Sbjct: 90 EVAAMTSKGQGQVSAST 106
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
A+ G G P F+ V L V P P +VW + + L +S +
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
DG L L A TDAG Y A N G A A VTV
Sbjct: 65 DGAEHGLLLTAA-LPTDAGVYVCRARNAAGEAYAAAAVTV 103
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 664 ATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF 723
A+ G G P F+ V L V P P +VW + + L +S +
Sbjct: 6 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 65
Query: 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763
DG L L A TDAG Y A N G A A VTV
Sbjct: 66 DGAEHGLLLTAA-LPTDAGVYVCRARNAAGEAYAAAAVTV 104
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 144 APVIQEPLKDS--VAGFQSSVTLECVVSGVPTPDIKWYKD--------DSLIKGRNI--- 190
A +Q PL V G SV L C G P P+I+W+ + L G +
Sbjct: 22 AGFVQAPLSQQRWVGG---SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 191 ----TYENNVAR-FTVVNCSESSEGRYTCKATNE 219
TY + A ++ E G Y C+A+N+
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD--------SKACRIFI-----DEET 563
SQ+ V ++ + G P PEI W G D ++ R+ I
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89
Query: 564 STIAIYSVVRADTSTYTVTATN 585
STI+I ++V DT TY A+N
Sbjct: 90 STISIDTLVEEDTGTYECRASN 111
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 85 KDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGT-GPASHNTRYVVVKAPVDA 142
+D+ W + +TT ++T + Y FRVAAVN GT G + + + K P
Sbjct: 208 EDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP 267
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDI 176
AP L +S SVT+ V PDI
Sbjct: 268 PAPANLR-LANSTVNSDGSVTVTIVWDLPEEPDI 300
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 134 VVVKAPVDAEAPVIQEPLKDSVAGFQ--SSVTLECVVSGVPTPDIKWYKDDSLIKG---- 187
+V+ PV + P + K + SS +L C+ PTP +WYK I+G
Sbjct: 203 LVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYK---FIEGTTRK 259
Query: 188 RNITYENNVARFT----VVNCSESSEGRYTCKATNEAGTAETSCTLLV 231
+ + + V + + + + G+Y C N G L V
Sbjct: 260 QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 307
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 511 VDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-----DSKACRIFIDEET-- 563
V S+ R+ + K+ Y GF P + W + + T ++K + D T
Sbjct: 7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
Query: 564 -STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599
+ I SV R DT TYT + G++ ++ ++++
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD--------SKACRIFI-----DEET 563
SQ+ V ++ + G P PEI W G D ++ R+ I
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAA 89
Query: 564 STIAIYSVVRADTSTYTVTATN 585
STI+I ++V DT TY A+N
Sbjct: 90 STISIDTLVEEDTGTYECRASN 111
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 144 APVIQEPLKDS--VAGFQSSVTLECVVSGVPTPDIKWYKD--------DSLIKGRNI--- 190
A +Q PL V G SV L C G P P+I+W+ + L G +
Sbjct: 22 AGFVQAPLSQQRWVGG---SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRV 78
Query: 191 ----TYENNVAR-FTVVNCSESSEGRYTCKATNE 219
TY + A ++ E G Y C+A+N+
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-----DSKACRIFIDEET---STIAIYS 570
R+ + K+ Y GF P + W + + T ++K + D T + I S
Sbjct: 14 RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 73
Query: 571 VVRADTSTYTVTATNAAGSTSLDLSLQVL 599
V R DT TYT + G++ ++ ++++
Sbjct: 74 VTREDTGTYTCMVSEEGGNSYGEVKVKLI 102
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 16/115 (13%)
Query: 125 GPASHNTRYVVV--KAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD 182
P RY+V +A AP I + +D L+C P +KW
Sbjct: 331 APMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWL--- 385
Query: 183 SLIKGRNITYENNVARFTVVN--------CSESSEGRYTCKATNEAGTAETSCTL 229
L G +++ + R +V+N S G YTC TN AG + S L
Sbjct: 386 -LPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD 181
E ++ EP +VA +VTL C V P+P I W KD
Sbjct: 3 EVQLVVEPEGGAVAP-GGTVTLTCEVPAQPSPQIHWMKD 40
>pdb|4AM0|Q Chain Q, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|R Chain R, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|S Chain S, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|T Chain T, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
Length = 101
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 302 STPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKG 343
STP E+ + + ++ L P GD+ + + + + W +KG
Sbjct: 60 STPFAEYTNSVTNIELEPPFGDSYIVIGVGDSALTLHWFRKG 101
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 160 SSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219
S++ L+CV G P P +W+K++ +T+E + V +G Y C N+
Sbjct: 134 STLVLQCVAVGSPIPHYQWFKNE-----LPLTHETK-KLYMVPYVDLEHQGTYWCHVYND 187
Query: 220 AGTAET 225
+ ++
Sbjct: 188 RDSQDS 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,845,474
Number of Sequences: 62578
Number of extensions: 937978
Number of successful extensions: 3342
Number of sequences better than 100.0: 215
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 2364
Number of HSP's gapped (non-prelim): 890
length of query: 803
length of database: 14,973,337
effective HSP length: 107
effective length of query: 696
effective length of database: 8,277,491
effective search space: 5761133736
effective search space used: 5761133736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)