Query psy2776
Match_columns 803
No_of_seqs 203 out of 2498
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 16:35:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 8.5E-56 1.8E-60 492.7 50.0 523 5-788 95-636 (1051)
2 KOG3513|consensus 100.0 3.8E-47 8.3E-52 423.7 50.7 578 2-787 189-840 (1051)
3 KOG4221|consensus 100.0 5.9E-41 1.3E-45 370.6 39.6 518 55-791 52-640 (1381)
4 KOG4221|consensus 100.0 4E-36 8.7E-41 332.5 54.4 635 4-790 94-847 (1381)
5 KOG4222|consensus 100.0 4.4E-36 9.5E-41 330.5 23.0 430 142-764 29-509 (1281)
6 KOG4222|consensus 100.0 4.5E-33 9.7E-38 306.9 24.5 464 17-660 103-620 (1281)
7 KOG4194|consensus 100.0 3.2E-28 7E-33 251.8 20.0 291 302-763 500-795 (873)
8 PHA02785 IL-beta-binding prote 99.9 7.9E-25 1.7E-29 229.7 28.2 210 425-757 84-320 (326)
9 PHA02785 IL-beta-binding prote 99.9 1.2E-24 2.6E-29 228.4 26.3 256 154-590 36-318 (326)
10 KOG4194|consensus 99.9 9.1E-25 2E-29 226.4 22.9 276 141-602 500-799 (873)
11 KOG3515|consensus 99.9 2.8E-20 6E-25 204.3 26.9 571 53-762 18-687 (741)
12 PHA02826 IL-1 receptor-like pr 99.8 1.2E-18 2.6E-23 171.2 18.4 159 517-755 31-214 (227)
13 PHA02826 IL-1 receptor-like pr 99.7 5.1E-17 1.1E-21 159.7 15.8 81 152-232 30-133 (227)
14 cd05762 Ig8_MLCK Eighth immuno 99.7 4.4E-17 9.5E-22 138.7 13.2 94 673-767 1-94 (98)
15 KOG3515|consensus 99.7 1.3E-16 2.8E-21 175.7 18.3 455 155-797 18-529 (741)
16 cd05747 Ig5_Titin_like M5, fif 99.6 3.8E-15 8.3E-20 125.8 12.0 90 672-762 3-92 (92)
17 cd05851 Ig3_Contactin-1 Third 99.6 2.3E-15 5E-20 125.5 10.2 88 672-764 1-88 (88)
18 cd05762 Ig8_MLCK Eighth immuno 99.6 7E-15 1.5E-19 125.1 12.3 87 516-602 8-94 (98)
19 PF07679 I-set: Immunoglobulin 99.6 8.1E-15 1.8E-19 123.8 12.7 90 673-763 1-90 (90)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.2E-14 2.5E-19 120.5 12.2 82 681-763 4-86 (86)
21 cd04975 Ig4_SCFR_like Fourth i 99.6 9.8E-15 2.1E-19 124.2 11.9 85 680-765 11-101 (101)
22 cd05737 Ig_Myomesin_like_C C-t 99.6 1.4E-14 3E-19 122.4 11.9 83 680-763 9-92 (92)
23 cd05852 Ig5_Contactin-1 Fifth 99.6 1.2E-14 2.7E-19 116.0 8.8 73 687-763 1-73 (73)
24 cd05892 Ig_Myotilin_C C-termin 99.6 1.7E-14 3.7E-19 115.5 9.4 73 690-763 1-75 (75)
25 cd05735 Ig8_DSCAM Eight immuno 99.6 3.6E-14 7.8E-19 118.3 11.6 82 687-769 1-87 (88)
26 cd04972 Ig_TrkABC_d4 Fourth do 99.6 4.2E-14 9.1E-19 118.9 12.1 86 677-763 5-90 (90)
27 cd05869 Ig5_NCAM-1 Fifth immun 99.5 6.1E-14 1.3E-18 119.7 12.1 91 672-763 2-97 (97)
28 cd05745 Ig3_Peroxidasin Third 99.5 2.6E-14 5.7E-19 115.2 8.9 74 686-763 1-74 (74)
29 cd05859 Ig4_PDGFR-alpha Fourth 99.5 5.1E-14 1.1E-18 120.1 10.9 84 681-765 12-101 (101)
30 cd05748 Ig_Titin_like Immunogl 99.5 6.7E-14 1.5E-18 112.9 10.6 74 689-763 1-74 (74)
31 cd05870 Ig5_NCAM-2 Fifth immun 99.5 7.9E-14 1.7E-18 119.3 11.6 90 672-763 2-98 (98)
32 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1E-13 2.2E-18 114.9 11.7 82 517-598 4-86 (86)
33 cd05851 Ig3_Contactin-1 Third 99.5 7.7E-14 1.7E-18 116.3 10.9 88 144-232 1-88 (88)
34 cd05730 Ig3_NCAM-1_like Third 99.5 8E-14 1.7E-18 118.7 11.2 82 681-765 12-94 (95)
35 cd05893 Ig_Palladin_C C-termin 99.5 5.5E-14 1.2E-18 112.8 9.5 73 690-763 1-75 (75)
36 cd04975 Ig4_SCFR_like Fourth i 99.5 1.5E-13 3.4E-18 116.9 12.2 84 516-599 11-100 (101)
37 cd05728 Ig4_Contactin-2-like F 99.5 7.4E-14 1.6E-18 115.8 10.0 84 675-763 2-85 (85)
38 cd04968 Ig3_Contactin_like Thi 99.5 9E-14 2E-18 116.4 10.6 87 672-763 1-87 (88)
39 cd05723 Ig4_Neogenin Fourth im 99.5 1E-13 2.3E-18 110.5 10.3 71 689-763 1-71 (71)
40 cd05737 Ig_Myomesin_like_C C-t 99.5 1.5E-13 3.2E-18 116.0 11.6 82 517-598 10-92 (92)
41 cd05865 Ig1_NCAM-1 First immun 99.5 1.6E-13 3.5E-18 115.8 11.7 85 678-763 6-95 (96)
42 cd05866 Ig1_NCAM-2 First immun 99.5 2.3E-13 4.9E-18 113.6 12.4 85 677-763 5-91 (92)
43 cd05732 Ig5_NCAM-1_like Fifth 99.5 1.4E-13 2.9E-18 117.7 11.1 90 672-763 2-96 (96)
44 cd05743 Ig_Perlecan_D2_like Im 99.5 1.4E-13 3E-18 112.2 10.4 77 687-764 1-77 (78)
45 cd05863 Ig2_VEGFR-3 Second imm 99.5 7.9E-14 1.7E-18 108.3 8.0 66 690-764 1-66 (67)
46 cd05892 Ig_Myotilin_C C-termin 99.5 1.4E-13 3E-18 110.2 9.6 73 526-598 1-75 (75)
47 cd05848 Ig1_Contactin-5 First 99.5 3.8E-13 8.3E-18 113.6 11.9 87 673-761 2-92 (94)
48 cd05744 Ig_Myotilin_C_like Imm 99.5 2.2E-13 4.8E-18 109.7 10.0 73 690-763 1-75 (75)
49 cd07693 Ig1_Robo First immunog 99.5 4E-13 8.7E-18 116.0 12.1 91 672-763 1-99 (100)
50 cd04969 Ig5_Contactin_like Fif 99.5 1.8E-13 3.9E-18 110.0 9.1 73 687-763 1-73 (73)
51 cd05891 Ig_M-protein_C C-termi 99.5 3.7E-13 8.1E-18 113.3 11.4 84 679-763 8-92 (92)
52 cd05854 Ig6_Contactin-2 Sixth 99.5 3.5E-13 7.6E-18 111.4 10.8 77 688-765 1-83 (85)
53 cd05868 Ig4_NrCAM Fourth immun 99.5 2.7E-13 5.9E-18 109.6 9.6 74 687-763 1-75 (76)
54 cd05748 Ig_Titin_like Immunogl 99.5 3.9E-13 8.5E-18 108.5 10.5 74 525-598 1-74 (74)
55 cd05745 Ig3_Peroxidasin Third 99.5 1.9E-13 4E-18 110.2 8.5 74 522-598 1-74 (74)
56 PF07679 I-set: Immunoglobulin 99.5 7.5E-13 1.6E-17 111.7 12.6 83 516-598 8-90 (90)
57 cd05852 Ig5_Contactin-1 Fifth 99.5 2.1E-13 4.6E-18 108.8 8.6 73 523-598 1-73 (73)
58 cd05867 Ig4_L1-CAM_like Fourth 99.5 5.5E-13 1.2E-17 108.1 10.8 74 687-763 1-75 (76)
59 cd05850 Ig1_Contactin-2 First 99.5 8.9E-13 1.9E-17 111.5 12.5 88 673-762 2-93 (94)
60 cd05857 Ig2_FGFR Second immuno 99.5 5.5E-13 1.2E-17 111.0 10.9 81 682-763 4-85 (85)
61 cd05859 Ig4_PDGFR-alpha Fourth 99.4 7.2E-13 1.6E-17 113.0 11.3 83 517-599 12-100 (101)
62 cd05893 Ig_Palladin_C C-termin 99.4 4.5E-13 9.7E-18 107.5 9.3 73 526-598 1-75 (75)
63 cd05853 Ig6_Contactin-4 Sixth 99.4 3.7E-13 8E-18 109.7 8.9 78 688-766 1-84 (85)
64 cd04972 Ig_TrkABC_d4 Fourth do 99.4 1E-12 2.2E-17 110.5 11.9 82 517-598 9-90 (90)
65 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 7.3E-13 1.6E-17 107.9 10.3 72 691-763 2-80 (81)
66 cd04978 Ig4_L1-NrCAM_like Four 99.4 5.5E-13 1.2E-17 108.4 9.4 75 687-763 1-75 (76)
67 cd05864 Ig2_VEGFR-2 Second imm 99.4 3.8E-13 8.2E-18 106.0 7.8 69 690-764 1-69 (70)
68 cd05747 Ig5_Titin_like M5, fif 99.4 1.3E-12 2.8E-17 110.4 11.5 81 516-596 11-91 (92)
69 cd05849 Ig1_Contactin-1 First 99.4 1.1E-12 2.3E-17 110.4 10.9 88 672-762 1-92 (93)
70 cd05855 Ig_TrkB_d5 Fifth domai 99.4 8.8E-13 1.9E-17 105.9 9.8 72 691-763 2-78 (79)
71 cd05730 Ig3_NCAM-1_like Third 99.4 1.1E-12 2.4E-17 111.7 10.9 82 517-600 12-94 (95)
72 cd05773 Ig8_hNephrin_like Eigh 99.4 1.6E-12 3.4E-17 113.1 11.9 92 672-764 4-105 (109)
73 cd05746 Ig4_Peroxidasin Fourth 99.4 4.4E-13 9.5E-18 106.3 7.5 69 690-762 1-69 (69)
74 cd05760 Ig2_PTK7 Second immuno 99.4 1.3E-12 2.8E-17 106.0 10.1 73 690-765 1-74 (77)
75 cd05744 Ig_Myotilin_C_like Imm 99.4 1.3E-12 2.8E-17 105.2 10.0 73 526-598 1-75 (75)
76 cd05865 Ig1_NCAM-1 First immun 99.4 1.7E-12 3.6E-17 109.6 11.1 82 517-598 9-95 (96)
77 cd04968 Ig3_Contactin_like Thi 99.4 1.8E-12 3.9E-17 108.5 11.2 88 144-232 1-88 (88)
78 cd05735 Ig8_DSCAM Eight immuno 99.4 1.7E-12 3.7E-17 108.1 10.9 80 523-602 1-85 (88)
79 cd05863 Ig2_VEGFR-3 Second imm 99.4 7.2E-13 1.6E-17 102.9 7.9 66 526-599 1-66 (67)
80 cd05758 Ig5_KIRREL3-like Fifth 99.4 2.4E-12 5.2E-17 110.1 12.0 88 672-761 2-97 (98)
81 cd05854 Ig6_Contactin-2 Sixth 99.4 1.9E-12 4.1E-17 107.0 10.7 79 524-602 1-85 (85)
82 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1.9E-12 4.1E-17 110.7 10.8 83 516-598 9-98 (98)
83 cd05876 Ig3_L1-CAM Third immun 99.4 8.1E-13 1.8E-17 105.3 7.9 70 690-763 1-70 (71)
84 cd04970 Ig6_Contactin_like Six 99.4 1.4E-12 3.1E-17 108.3 9.7 77 688-765 1-83 (85)
85 cd05743 Ig_Perlecan_D2_like Im 99.4 1.7E-12 3.6E-17 105.8 9.8 76 523-598 1-76 (78)
86 cd05868 Ig4_NrCAM Fourth immun 99.4 1.4E-12 3E-17 105.4 9.1 76 523-599 1-76 (76)
87 cd04976 Ig2_VEGFR Second immun 99.4 1.2E-12 2.5E-17 104.2 8.5 70 690-764 1-70 (71)
88 cd05728 Ig4_Contactin-2-like F 99.4 1.7E-12 3.6E-17 107.7 9.7 79 516-598 7-85 (85)
89 cd05726 Ig4_Robo Fhird immunog 99.4 1.6E-12 3.5E-17 109.2 9.7 81 687-771 1-89 (90)
90 cd05866 Ig1_NCAM-2 First immun 99.4 3.4E-12 7.4E-17 106.6 11.4 81 517-598 9-91 (92)
91 cd05723 Ig4_Neogenin Fourth im 99.4 1.7E-12 3.6E-17 103.5 9.2 71 525-598 1-71 (71)
92 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2.1E-12 4.6E-17 101.8 9.4 69 687-762 1-69 (69)
93 cd05740 Ig_CEACAM_D4 Fourth im 99.4 2.5E-12 5.5E-17 107.6 10.2 79 680-763 11-90 (91)
94 cd05867 Ig4_L1-CAM_like Fourth 99.4 2.5E-12 5.4E-17 104.2 9.8 74 523-598 1-75 (76)
95 cd04973 Ig1_FGFR First immunog 99.4 2E-12 4.3E-17 105.5 9.2 78 680-763 2-79 (79)
96 cd05857 Ig2_FGFR Second immuno 99.4 3.2E-12 6.9E-17 106.4 10.5 81 518-598 4-85 (85)
97 cd05749 Ig2_Tyro3_like Second 99.4 1.7E-12 3.7E-17 105.5 8.4 76 677-761 3-80 (81)
98 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.7E-12 7.9E-17 108.8 10.8 82 517-598 10-96 (96)
99 cd05891 Ig_M-protein_C C-termi 99.4 4.2E-12 9.2E-17 106.8 10.9 82 517-598 10-92 (92)
100 cd04969 Ig5_Contactin_like Fif 99.4 2.2E-12 4.9E-17 103.6 8.7 73 523-598 1-73 (73)
101 cd05853 Ig6_Contactin-4 Sixth 99.4 2.8E-12 6.2E-17 104.6 9.2 79 524-602 1-85 (85)
102 cd04978 Ig4_L1-NrCAM_like Four 99.4 2.7E-12 5.9E-17 104.3 8.9 76 523-599 1-76 (76)
103 cd05764 Ig_2 Subgroup of the i 99.4 3.4E-12 7.3E-17 103.0 9.4 73 687-763 1-74 (74)
104 cd05736 Ig2_Follistatin_like S 99.4 3.3E-12 7.1E-17 103.6 9.3 74 690-764 1-74 (76)
105 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2.5E-12 5.5E-17 103.4 8.5 71 690-764 1-74 (74)
106 cd05855 Ig_TrkB_d5 Fifth domai 99.4 3.4E-12 7.4E-17 102.5 9.0 71 527-597 2-77 (79)
107 cd05740 Ig_CEACAM_D4 Fourth im 99.4 6.1E-12 1.3E-16 105.3 11.0 80 151-231 10-90 (91)
108 cd05763 Ig_1 Subgroup of the i 99.4 2.8E-12 6.1E-17 103.7 8.4 71 690-763 1-74 (75)
109 cd04974 Ig3_FGFR Third immunog 99.4 2.5E-12 5.4E-17 107.9 8.2 76 687-763 1-89 (90)
110 cd04977 Ig1_NCAM-1_like First 99.3 1.1E-11 2.4E-16 104.3 11.9 85 677-763 5-92 (92)
111 cd05858 Ig3_FGFR-2 Third immun 99.3 4.6E-12 1E-16 106.4 9.5 76 687-763 1-89 (90)
112 cd05725 Ig3_Robo Third immunog 99.3 3.7E-12 7.9E-17 101.1 8.1 69 690-763 1-69 (69)
113 cd05856 Ig2_FGFRL1-like Second 99.3 4.6E-12 1E-16 104.7 9.0 78 683-763 5-82 (82)
114 cd05731 Ig3_L1-CAM_like Third 99.3 3.7E-12 8.1E-17 101.9 8.0 70 690-763 1-70 (71)
115 cd04970 Ig6_Contactin_like Six 99.3 7.2E-12 1.6E-16 104.1 9.9 79 524-602 1-85 (85)
116 cd05869 Ig5_NCAM-1 Fifth immun 99.3 1.2E-11 2.5E-16 105.6 11.4 88 144-231 2-97 (97)
117 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 6.9E-12 1.5E-16 102.2 9.5 71 527-597 2-79 (81)
118 cd05876 Ig3_L1-CAM Third immun 99.3 4.7E-12 1E-16 100.9 8.4 71 162-232 1-71 (71)
119 cd05724 Ig2_Robo Second immuno 99.3 8.3E-12 1.8E-16 104.2 10.3 81 679-763 3-86 (86)
120 cd05898 Ig5_KIRREL3 Fifth immu 99.3 1.7E-11 3.7E-16 102.8 11.9 88 672-761 2-97 (98)
121 cd05746 Ig4_Peroxidasin Fourth 99.3 3.6E-12 7.7E-17 101.0 7.3 68 526-596 1-68 (69)
122 cd05864 Ig2_VEGFR-2 Second imm 99.3 4.9E-12 1.1E-16 99.6 7.9 68 526-598 1-68 (70)
123 cd04976 Ig2_VEGFR Second immun 99.3 6.1E-12 1.3E-16 100.1 8.6 70 526-599 1-70 (71)
124 cd05722 Ig1_Neogenin First imm 99.3 1.2E-11 2.6E-16 105.2 10.9 86 675-763 2-95 (95)
125 cd05773 Ig8_hNephrin_like Eigh 99.3 1.5E-11 3.2E-16 107.0 11.6 81 522-602 22-108 (109)
126 cd05763 Ig_1 Subgroup of the i 99.3 8.9E-12 1.9E-16 100.8 8.6 73 526-598 1-74 (75)
127 cd04973 Ig1_FGFR First immunog 99.3 1.2E-11 2.6E-16 100.9 9.3 77 517-598 3-79 (79)
128 cd05736 Ig2_Follistatin_like S 99.3 1.3E-11 2.9E-16 100.1 9.2 75 526-600 1-75 (76)
129 cd05760 Ig2_PTK7 Second immuno 99.3 1.3E-11 2.7E-16 100.2 8.9 71 526-598 1-74 (77)
130 cd05765 Ig_3 Subgroup of the i 99.3 9.7E-12 2.1E-16 102.4 8.4 76 687-763 1-81 (81)
131 cd05750 Ig_Pro_neuregulin Immu 99.3 1.1E-11 2.4E-16 100.4 8.4 70 690-760 1-74 (75)
132 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 1.9E-11 4.2E-16 96.3 9.3 68 523-596 1-68 (69)
133 cd05733 Ig6_L1-CAM_like Sixth 99.3 9.1E-12 2E-16 101.0 7.6 67 690-757 1-71 (77)
134 cd05756 Ig1_IL1R_like First im 99.3 9.3E-12 2E-16 104.7 7.7 81 680-763 7-94 (94)
135 cd05858 Ig3_FGFR-2 Third immun 99.3 2E-11 4.4E-16 102.5 9.7 76 523-598 1-89 (90)
136 cd05856 Ig2_FGFRL1-like Second 99.3 1.7E-11 3.7E-16 101.3 9.0 79 518-598 4-82 (82)
137 cd07702 Ig2_VEGFR-1 Second imm 99.3 1.6E-11 3.5E-16 96.8 8.3 70 690-763 1-70 (72)
138 cd05875 Ig6_hNeurofascin_like 99.3 1.8E-11 4E-16 98.9 8.9 66 690-757 1-71 (77)
139 cd05764 Ig_2 Subgroup of the i 99.3 2.6E-11 5.6E-16 97.8 9.6 73 523-598 1-74 (74)
140 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.6E-11 3.5E-16 99.2 8.4 67 690-757 1-71 (77)
141 cd05731 Ig3_L1-CAM_like Third 99.3 1.7E-11 3.8E-16 98.0 8.3 70 162-231 1-70 (71)
142 cd05725 Ig3_Robo Third immunog 99.3 1.8E-11 3.9E-16 97.1 8.0 69 162-231 1-69 (69)
143 cd05726 Ig4_Robo Fhird immunog 99.3 2.5E-11 5.4E-16 102.0 9.2 76 523-601 1-84 (90)
144 cd04977 Ig1_NCAM-1_like First 99.3 5E-11 1.1E-15 100.3 10.7 81 517-598 9-92 (92)
145 cd07693 Ig1_Robo First immunog 99.2 5E-11 1.1E-15 102.7 10.8 88 144-231 1-99 (100)
146 cd04974 Ig3_FGFR Third immunog 99.2 2.6E-11 5.7E-16 101.7 8.7 76 523-598 1-89 (90)
147 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 3.3E-11 7.1E-16 96.9 8.7 72 526-598 1-73 (74)
148 cd04967 Ig1_Contactin First Ig 99.2 8E-11 1.7E-15 99.1 11.1 82 673-756 2-86 (91)
149 cd05849 Ig1_Contactin-1 First 99.2 6.4E-11 1.4E-15 99.6 10.1 83 145-229 2-91 (93)
150 cd05722 Ig1_Neogenin First imm 99.2 7.6E-11 1.6E-15 100.2 10.7 81 517-598 8-95 (95)
151 cd05750 Ig_Pro_neuregulin Immu 99.2 4E-11 8.7E-16 97.1 8.5 70 526-595 1-74 (75)
152 cd05758 Ig5_KIRREL3-like Fifth 99.2 9.1E-11 2E-15 100.3 10.9 80 517-596 10-97 (98)
153 cd05724 Ig2_Robo Second immuno 99.2 7.1E-11 1.5E-15 98.5 9.9 79 517-598 5-86 (86)
154 cd05848 Ig1_Contactin-5 First 99.2 9.3E-11 2E-15 99.0 10.5 81 145-225 2-87 (94)
155 cd05771 IgC_Tapasin_R Tapasin- 99.2 2.1E-10 4.6E-15 105.2 13.6 117 565-753 2-132 (139)
156 cd05756 Ig1_IL1R_like First im 99.2 3.5E-11 7.5E-16 101.3 7.7 80 517-598 8-94 (94)
157 cd07702 Ig2_VEGFR-1 Second imm 99.2 6.1E-11 1.3E-15 93.5 8.1 68 162-229 1-68 (72)
158 cd05742 Ig1_VEGFR_like First i 99.2 6.9E-11 1.5E-15 97.9 8.6 76 687-763 1-83 (84)
159 cd05749 Ig2_Tyro3_like Second 99.2 9.1E-11 2E-15 95.3 9.0 77 148-229 2-80 (81)
160 cd05733 Ig6_L1-CAM_like Sixth 99.2 5.6E-11 1.2E-15 96.4 7.6 67 526-592 1-71 (77)
161 cd05765 Ig_3 Subgroup of the i 99.2 7.3E-11 1.6E-15 97.2 8.3 76 523-598 1-81 (81)
162 cd05734 Ig7_DSCAM Seventh immu 99.2 6.8E-11 1.5E-15 96.6 7.9 70 690-763 1-79 (79)
163 cd05850 Ig1_Contactin-2 First 99.2 2.2E-10 4.8E-15 96.8 11.1 83 145-229 2-92 (94)
164 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1.2E-10 2.5E-15 94.5 8.7 70 690-760 1-75 (76)
165 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.2E-10 2.5E-15 94.3 8.5 67 526-592 1-71 (77)
166 cd05875 Ig6_hNeurofascin_like 99.2 1.3E-10 2.9E-15 93.9 8.5 68 526-593 1-72 (77)
167 cd05729 Ig2_FGFR_like Second i 99.2 3.5E-10 7.6E-15 94.1 11.1 81 682-763 4-85 (85)
168 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 2.8E-10 6.2E-15 93.8 9.3 76 687-763 1-82 (84)
169 cd05742 Ig1_VEGFR_like First i 99.1 2E-10 4.4E-15 95.1 8.3 77 523-599 1-84 (84)
170 cd05752 Ig1_FcgammaR_like Frst 99.1 1.9E-10 4.2E-15 92.8 7.8 75 674-762 2-77 (78)
171 cd07701 Ig1_Necl-3 First (N-te 99.1 4.1E-10 8.8E-15 95.1 10.1 83 679-763 4-95 (95)
172 cd05754 Ig3_Perlecan_like Thir 99.1 2.7E-10 5.9E-15 94.6 8.3 79 676-761 5-84 (85)
173 cd05752 Ig1_FcgammaR_like Frst 99.1 3.2E-10 6.9E-15 91.6 8.1 67 145-219 1-68 (78)
174 cd05895 Ig_Pro_neuregulin-1 Im 99.1 5E-10 1.1E-14 90.7 8.9 70 526-595 1-75 (76)
175 cd05757 Ig2_IL1R_like Second i 99.1 5E-10 1.1E-14 93.6 9.0 80 681-765 4-88 (92)
176 cd05873 Ig_Sema4D_like Immunog 99.1 8E-10 1.7E-14 90.5 9.9 69 679-752 3-71 (87)
177 cd05882 Ig1_Necl-1 First (N-te 99.1 1.1E-09 2.3E-14 92.1 10.8 82 680-763 5-95 (95)
178 cd05898 Ig5_KIRREL3 Fifth immu 99.1 1.2E-09 2.5E-14 91.7 10.7 81 516-596 9-97 (98)
179 cd05729 Ig2_FGFR_like Second i 99.1 1.4E-09 2.9E-14 90.5 11.2 81 518-598 4-85 (85)
180 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 7.8E-10 1.7E-14 91.2 9.1 77 523-599 1-83 (84)
181 cd05734 Ig7_DSCAM Seventh immu 99.1 5E-10 1.1E-14 91.5 7.7 70 526-598 1-79 (79)
182 cd04967 Ig1_Contactin First Ig 99.0 1.2E-09 2.6E-14 92.0 9.7 81 145-225 2-87 (91)
183 cd05771 IgC_Tapasin_R Tapasin- 99.0 1.5E-09 3.4E-14 99.4 10.9 117 424-588 2-132 (139)
184 cd04979 Ig_Semaphorin_C Immuno 99.0 8.6E-10 1.9E-14 92.4 8.3 80 680-763 4-86 (89)
185 cd05873 Ig_Sema4D_like Immunog 99.0 1.5E-09 3.3E-14 88.9 9.2 67 151-220 3-71 (87)
186 cd07701 Ig1_Necl-3 First (N-te 99.0 2E-09 4.3E-14 90.9 10.2 81 517-598 6-95 (95)
187 cd05754 Ig3_Perlecan_like Thir 99.0 1.9E-09 4E-14 89.5 9.2 77 150-229 7-84 (85)
188 cd05757 Ig2_IL1R_like Second i 99.0 2.3E-09 4.9E-14 89.6 8.8 78 517-598 4-86 (92)
189 cd05882 Ig1_Necl-1 First (N-te 99.0 5.8E-09 1.3E-13 87.7 11.0 80 517-597 6-94 (95)
190 cd05860 Ig4_SCFR Fourth immuno 99.0 8.7E-09 1.9E-13 85.5 11.2 83 681-764 12-100 (101)
191 cd05753 Ig2_FcgammaR_like Seco 98.9 2.2E-09 4.8E-14 88.1 7.4 72 682-762 9-82 (83)
192 cd04979 Ig_Semaphorin_C Immuno 98.9 3E-09 6.6E-14 89.1 8.2 81 517-600 5-88 (89)
193 cd05727 Ig2_Contactin-2-like S 98.9 1.7E-09 3.7E-14 89.9 6.3 72 681-755 12-86 (96)
194 cd05860 Ig4_SCFR Fourth immuno 98.9 1.5E-08 3.2E-13 84.2 11.3 83 517-599 12-100 (101)
195 PF13895 Ig_2: Immunoglobulin 98.9 5E-09 1.1E-13 85.9 8.6 71 682-763 9-80 (80)
196 smart00410 IG_like Immunoglobu 98.9 2.2E-08 4.7E-13 83.0 12.6 82 681-763 3-85 (86)
197 smart00409 IG Immunoglobulin. 98.9 2.2E-08 4.7E-13 83.0 12.6 82 681-763 3-85 (86)
198 cd05845 Ig2_L1-CAM_like Second 98.9 4.5E-09 9.7E-14 87.2 6.9 73 679-755 10-85 (95)
199 smart00408 IGc2 Immunoglobulin 98.9 9.4E-09 2E-13 79.5 8.4 63 686-753 1-63 (63)
200 cd07690 Ig1_CD4 First immunogl 98.9 6.3E-09 1.4E-13 86.9 7.4 74 682-756 2-92 (94)
201 cd05862 Ig1_VEGFR First immuno 98.9 1E-08 2.3E-13 84.8 8.4 77 687-764 1-85 (86)
202 cd05717 Ig1_Necl-1-3_like Firs 98.8 2E-08 4.4E-13 85.2 10.2 82 680-763 5-95 (95)
203 cd05727 Ig2_Contactin-2-like S 98.8 7.2E-09 1.6E-13 86.2 6.8 72 517-590 12-86 (96)
204 smart00409 IG Immunoglobulin. 98.8 7.7E-08 1.7E-12 79.6 12.8 82 517-598 3-85 (86)
205 smart00410 IG_like Immunoglobu 98.8 7.7E-08 1.7E-12 79.6 12.8 82 517-598 3-85 (86)
206 cd05871 Ig_Semaphorin_classIII 98.8 1.7E-08 3.7E-13 84.3 8.5 77 681-763 5-88 (91)
207 cd05753 Ig2_FcgammaR_like Seco 98.8 1.4E-08 3E-13 83.4 7.6 65 154-223 9-74 (83)
208 smart00408 IGc2 Immunoglobulin 98.8 2E-08 4.4E-13 77.6 8.2 63 158-221 1-63 (63)
209 TIGR00864 PCC polycystin catio 98.8 0.0015 3.2E-08 83.0 53.0 221 517-776 1876-2137(2740)
210 cd05862 Ig1_VEGFR First immuno 98.8 2.1E-08 4.6E-13 82.9 7.6 77 523-599 1-85 (86)
211 cd05717 Ig1_Necl-1-3_like Firs 98.8 5.6E-08 1.2E-12 82.5 10.2 81 517-598 6-95 (95)
212 cd07690 Ig1_CD4 First immunogl 98.8 3.4E-08 7.5E-13 82.4 8.5 72 518-589 2-90 (94)
213 cd05897 Ig2_IL1R2_like Second 98.8 4.1E-08 9E-13 81.8 8.7 76 682-759 5-85 (95)
214 cd05871 Ig_Semaphorin_classIII 98.7 3.7E-08 8.1E-13 82.3 8.3 79 517-600 5-90 (91)
215 PF13895 Ig_2: Immunoglobulin 98.7 4.6E-08 9.9E-13 80.1 8.6 71 518-598 9-80 (80)
216 cd05897 Ig2_IL1R2_like Second 98.7 5.9E-08 1.3E-12 80.8 8.6 81 517-598 4-93 (95)
217 PHA03376 BARF1; Provisional 98.7 8.5E-07 1.8E-11 80.4 16.4 75 518-592 21-115 (221)
218 cd05845 Ig2_L1-CAM_like Second 98.7 7.3E-08 1.6E-12 80.0 7.9 72 516-590 11-85 (95)
219 TIGR00864 PCC polycystin catio 98.7 0.00081 1.8E-08 85.2 45.9 212 518-765 1707-1950(2740)
220 PF00047 ig: Immunoglobulin do 98.7 6E-08 1.3E-12 75.5 7.0 61 523-583 1-64 (64)
221 cd05885 Ig2_Necl-4 Second immu 98.7 8.3E-08 1.8E-12 76.8 7.7 63 690-755 2-69 (80)
222 cd05881 Ig1_Necl-2 First (N-te 98.7 2.6E-07 5.7E-12 77.1 10.8 70 680-750 5-83 (95)
223 PF00047 ig: Immunoglobulin do 98.6 5.7E-08 1.2E-12 75.6 6.1 61 687-748 1-64 (64)
224 cd05759 Ig2_KIRREL3-like Secon 98.6 1.6E-07 3.4E-12 77.3 8.9 75 689-764 1-81 (82)
225 cd05872 Ig_Sema4B_like Immunog 98.6 2.2E-07 4.7E-12 75.6 9.1 79 680-765 4-82 (85)
226 KOG0613|consensus 98.6 3.2E-07 7E-12 106.3 13.0 450 155-755 51-519 (1205)
227 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 3E-07 6.5E-12 76.7 9.2 81 680-763 8-104 (104)
228 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 2.8E-07 6E-12 76.9 8.1 78 154-231 10-104 (104)
229 cd05881 Ig1_Necl-2 First (N-te 98.5 9.8E-07 2.1E-11 73.6 11.1 70 517-586 6-84 (95)
230 cd05751 Ig1_LILRB1_like First 98.5 2.9E-07 6.2E-12 77.2 7.8 75 144-220 2-76 (91)
231 cd05885 Ig2_Necl-4 Second immu 98.5 3.7E-07 8.1E-12 73.1 7.8 64 526-590 2-69 (80)
232 cd05759 Ig2_KIRREL3-like Secon 98.5 1E-06 2.2E-11 72.4 9.4 72 526-597 2-81 (82)
233 cd05872 Ig_Sema4B_like Immunog 98.5 8.1E-07 1.8E-11 72.3 8.5 77 517-598 5-82 (85)
234 PF13927 Ig_3: Immunoglobulin 98.4 2.7E-07 5.9E-12 74.3 5.2 73 673-750 2-75 (75)
235 cd05751 Ig1_LILRB1_like First 98.4 5.8E-07 1.2E-11 75.4 7.1 66 681-751 10-75 (91)
236 PF13927 Ig_3: Immunoglobulin 98.4 4.7E-07 1E-11 72.9 6.4 73 145-218 2-75 (75)
237 cd04983 IgV_TCR_alpha_like Imm 98.4 1.1E-06 2.4E-11 76.7 8.7 74 679-753 5-94 (109)
238 cd05877 Ig_LP_like Immunoglobu 98.4 1.6E-06 3.6E-11 75.2 9.5 79 686-765 1-104 (106)
239 cd05714 Ig_CSPGs_LP Immunoglob 98.4 2.7E-06 5.9E-11 73.8 10.2 78 523-600 2-104 (106)
240 cd05900 Ig_Aggrecan Immunoglob 98.4 2.3E-06 5E-11 74.1 9.6 79 686-765 1-110 (112)
241 cd05714 Ig_CSPGs_LP Immunoglob 98.4 2.6E-06 5.6E-11 74.0 10.0 79 686-765 1-104 (106)
242 cd05899 IgV_TCR_beta Immunoglo 98.4 1.5E-06 3.3E-11 76.0 8.2 74 678-753 4-96 (110)
243 cd05900 Ig_Aggrecan Immunoglob 98.4 3E-06 6.5E-11 73.4 9.7 79 522-600 1-110 (112)
244 cd05713 Ig_MOG_like Immunoglob 98.3 3.1E-06 6.8E-11 72.6 9.5 76 687-763 1-99 (100)
245 cd04983 IgV_TCR_alpha_like Imm 98.3 3.2E-06 6.9E-11 73.9 8.7 72 150-221 4-94 (109)
246 cd04980 IgV_L_kappa Immunoglob 98.3 3E-06 6.6E-11 73.5 8.4 74 677-751 5-93 (106)
247 cd05877 Ig_LP_like Immunoglobu 98.3 7.5E-06 1.6E-10 71.0 10.2 78 523-600 2-104 (106)
248 cd00099 IgV Immunoglobulin var 98.2 3.4E-06 7.4E-11 73.1 7.8 70 683-753 2-91 (105)
249 KOG0613|consensus 98.2 1.8E-05 4E-10 92.2 15.4 493 45-711 141-685 (1205)
250 cd05713 Ig_MOG_like Immunoglob 98.2 8.6E-06 1.9E-10 69.8 9.7 76 523-598 1-99 (100)
251 cd05718 Ig1_PVR_like First imm 98.2 7.8E-06 1.7E-10 69.8 9.4 76 524-599 1-98 (98)
252 cd05774 Ig_CEACAM_D1 First imm 98.2 5.8E-06 1.3E-10 70.7 8.4 76 682-763 8-105 (105)
253 cd04982 IgV_TCR_gamma Immunogl 98.2 7.1E-06 1.5E-10 72.5 8.6 70 680-750 6-98 (116)
254 cd05879 Ig_P0 Immunoglobulin ( 98.2 1.6E-05 3.4E-10 69.5 10.4 83 680-763 6-114 (116)
255 cd05718 Ig1_PVR_like First imm 98.2 1.1E-05 2.4E-10 68.9 9.3 75 688-763 1-97 (98)
256 cd05899 IgV_TCR_beta Immunoglo 98.2 7.6E-06 1.7E-10 71.5 8.4 70 150-220 4-95 (110)
257 cd05883 Ig2_Necl-2 Second immu 98.2 1.7E-05 3.6E-10 63.8 9.2 73 690-763 2-79 (82)
258 PHA03376 BARF1; Provisional 98.1 3.4E-05 7.3E-10 70.3 12.0 29 420-448 84-112 (221)
259 cd05878 Ig_Aggrecan_like Immun 98.1 1.2E-05 2.7E-10 69.9 9.0 78 687-765 2-108 (110)
260 cd05880 Ig_EVA1 Immunoglobulin 98.1 1.6E-05 3.4E-10 69.9 9.8 75 679-754 5-104 (115)
261 cd05878 Ig_Aggrecan_like Immun 98.1 2E-05 4.4E-10 68.5 10.0 78 523-600 2-108 (110)
262 cd00099 IgV Immunoglobulin var 98.1 9.5E-06 2.1E-10 70.3 8.0 70 519-588 2-91 (105)
263 cd05879 Ig_P0 Immunoglobulin ( 98.1 2.1E-05 4.6E-10 68.7 10.0 79 151-229 5-112 (116)
264 cd05775 Ig_SLAM-CD84_like_N N- 98.1 7.9E-06 1.7E-10 69.3 7.1 77 686-763 3-96 (97)
265 cd05755 Ig2_ICAM-1_like Second 98.1 1.2E-05 2.7E-10 67.4 8.1 73 681-755 10-88 (100)
266 cd05741 Ig_CEACAM_D1_like Firs 98.1 9.7E-06 2.1E-10 68.3 7.5 71 687-761 1-90 (92)
267 cd05775 Ig_SLAM-CD84_like_N N- 98.1 1.1E-05 2.3E-10 68.5 7.7 77 522-598 3-96 (97)
268 cd05774 Ig_CEACAM_D1 First imm 98.1 1.9E-05 4E-10 67.6 8.8 76 154-230 8-104 (105)
269 cd05761 Ig2_Necl-1-4_like Seco 98.1 2.3E-05 4.9E-10 64.2 8.7 65 690-755 2-71 (82)
270 cd04984 IgV_L_lambda Immunoglo 98.1 1.6E-05 3.6E-10 67.7 7.9 68 683-751 2-85 (98)
271 cd04980 IgV_L_kappa Immunoglob 98.0 1.8E-05 4E-10 68.5 8.2 70 517-586 9-93 (106)
272 cd05741 Ig_CEACAM_D1_like Firs 98.0 2.1E-05 4.5E-10 66.2 8.3 63 159-222 1-82 (92)
273 cd05880 Ig_EVA1 Immunoglobulin 98.0 3E-05 6.4E-10 68.1 9.4 73 517-589 7-104 (115)
274 cd04982 IgV_TCR_gamma Immunogl 98.0 2.6E-05 5.6E-10 68.9 8.6 69 517-585 7-98 (116)
275 cd05711 Ig_FcalphaRI Immunoglo 98.0 2.1E-05 4.5E-10 66.3 7.4 67 681-749 9-75 (94)
276 cd05883 Ig2_Necl-2 Second immu 98.0 6.8E-05 1.5E-09 60.3 9.7 74 526-599 2-80 (82)
277 cd07705 Ig2_Necl-1 Second immu 98.0 5.8E-05 1.2E-09 61.8 9.5 64 690-755 2-72 (83)
278 cd05755 Ig2_ICAM-1_like Second 98.0 4.4E-05 9.6E-10 64.1 8.7 71 151-221 8-86 (100)
279 cd05902 Ig_Neurocan Immunoglob 98.0 5.7E-05 1.2E-09 65.2 9.6 78 523-600 2-108 (110)
280 cd05715 Ig_P0-like Immunoglobu 98.0 4.5E-05 9.7E-10 67.3 9.3 75 679-754 5-105 (116)
281 cd07705 Ig2_Necl-1 Second immu 97.9 8.5E-05 1.8E-09 60.8 10.0 63 526-589 2-71 (83)
282 cd00098 IgC Immunoglobulin Con 97.9 2.6E-05 5.6E-10 66.1 7.0 69 685-754 11-87 (95)
283 cd05715 Ig_P0-like Immunoglobu 97.9 5.1E-05 1.1E-09 66.9 9.1 73 517-589 7-105 (116)
284 cd00098 IgC Immunoglobulin Con 97.9 2.6E-05 5.7E-10 66.1 7.0 69 521-589 11-87 (95)
285 PF07686 V-set: Immunoglobulin 97.9 7.1E-05 1.5E-09 65.7 9.4 84 679-763 8-114 (114)
286 PHA02987 Ig domain OX-2-like p 97.9 9.8E-05 2.1E-09 68.0 10.3 86 517-602 24-125 (189)
287 cd05761 Ig2_Necl-1-4_like Seco 97.9 9.5E-05 2.1E-09 60.5 9.2 63 526-589 2-70 (82)
288 cd05901 Ig_Versican Immunoglob 97.9 0.00016 3.5E-09 62.5 10.7 78 523-600 2-115 (117)
289 cd07694 Ig2_CD4 Second immunog 97.9 0.00015 3.4E-09 58.1 9.6 75 154-231 9-85 (88)
290 cd05902 Ig_Neurocan Immunoglob 97.9 8.8E-05 1.9E-09 64.0 8.8 75 159-233 2-108 (110)
291 cd05711 Ig_FcalphaRI Immunoglo 97.8 6.7E-05 1.4E-09 63.2 7.8 72 145-218 2-76 (94)
292 cd04984 IgV_L_lambda Immunoglo 97.8 5.8E-05 1.3E-09 64.3 7.5 67 520-586 3-85 (98)
293 cd05888 Ig1_Nectin-4_like Frst 97.8 0.00012 2.6E-09 62.5 9.4 74 525-598 2-99 (100)
294 cd05716 Ig_pIgR Immunoglobulin 97.8 9.8E-05 2.1E-09 62.9 8.6 70 682-752 2-87 (98)
295 cd05886 Ig1_Nectin-1_like Firs 97.8 0.00018 3.9E-09 60.9 9.9 71 161-231 2-98 (99)
296 cd05887 Ig1_Nectin-3_like Firs 97.8 0.00015 3.3E-09 60.7 9.3 76 524-599 1-96 (96)
297 cd05886 Ig1_Nectin-1_like Firs 97.8 0.00016 3.5E-09 61.2 9.5 74 525-598 2-98 (99)
298 cd05846 Ig1_MRC-OX-2_like Firs 97.8 0.00016 3.5E-09 61.4 9.5 76 523-598 1-96 (97)
299 PF07686 V-set: Immunoglobulin 97.8 0.00015 3.3E-09 63.6 9.7 82 517-598 10-114 (114)
300 cd07706 IgV_TCR_delta Immunogl 97.8 9.5E-05 2.1E-09 65.3 8.2 73 678-751 5-94 (116)
301 cd05888 Ig1_Nectin-4_like Frst 97.8 0.00018 3.9E-09 61.4 9.6 74 689-763 2-99 (100)
302 PHA02987 Ig domain OX-2-like p 97.8 0.00014 3.1E-09 67.0 9.3 89 680-769 23-127 (189)
303 cd05846 Ig1_MRC-OX-2_like Firs 97.8 0.00018 3.9E-09 61.1 9.5 73 159-231 1-96 (97)
304 cd05901 Ig_Versican Immunoglob 97.8 0.00031 6.8E-09 60.7 10.6 78 687-765 2-115 (117)
305 cd07694 Ig2_CD4 Second immunog 97.8 0.00018 3.8E-09 57.7 8.3 77 518-600 9-87 (88)
306 cd07700 IgV_CD8_beta Immunoglo 97.7 0.00012 2.6E-09 63.5 8.1 68 683-751 2-94 (107)
307 cd05720 Ig_CD8_alpha Immunoglo 97.7 0.0001 2.2E-09 63.4 7.0 67 683-750 2-90 (104)
308 cd05772 IgC_SIRP Signal-regula 97.7 0.00047 1E-08 59.7 10.9 71 683-755 17-95 (111)
309 cd05884 Ig2_Necl-3 Second immu 97.7 0.0002 4.3E-09 58.5 8.0 64 690-754 2-71 (83)
310 cd05884 Ig2_Necl-3 Second immu 97.7 0.00021 4.6E-09 58.3 8.1 64 526-589 2-71 (83)
311 cd05716 Ig_pIgR Immunoglobulin 97.6 0.00025 5.5E-09 60.3 8.5 70 518-587 2-87 (98)
312 cd00096 Ig Immunoglobulin doma 97.6 0.00024 5.2E-09 55.6 7.5 65 690-755 1-69 (74)
313 cd05887 Ig1_Nectin-3_like Firs 97.6 0.00044 9.5E-09 57.9 9.0 75 688-763 1-95 (96)
314 cd07706 IgV_TCR_delta Immunogl 97.6 0.00024 5.3E-09 62.6 7.9 70 150-219 5-94 (116)
315 cd05772 IgC_SIRP Signal-regula 97.6 0.00063 1.4E-08 58.9 9.6 84 499-589 2-94 (111)
316 cd05712 Ig_Siglec_N Immunoglob 97.5 0.00054 1.2E-08 60.7 9.2 72 679-751 6-102 (119)
317 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00059 1.3E-08 57.3 8.8 67 687-754 14-85 (93)
318 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00036 7.7E-09 60.1 7.1 66 520-585 3-90 (104)
319 cd07700 IgV_CD8_beta Immunoglo 97.5 0.00033 7.2E-09 60.7 7.0 64 155-218 2-93 (107)
320 cd00096 Ig Immunoglobulin doma 97.5 0.00049 1.1E-08 53.8 7.5 63 526-588 1-67 (74)
321 cd04981 IgV_H Immunoglobulin ( 97.4 0.00069 1.5E-08 59.7 7.8 70 680-750 5-97 (117)
322 cd05712 Ig_Siglec_N Immunoglob 97.4 0.00076 1.6E-08 59.7 7.9 69 151-219 6-102 (119)
323 PF08205 C2-set_2: CD80-like C 97.4 0.0011 2.3E-08 55.3 8.4 68 687-755 14-87 (89)
324 PHA03270 envelope glycoprotein 97.3 0.02 4.4E-07 59.4 18.3 82 422-551 181-265 (466)
325 cd05889 Ig1_DNAM-1_like First 97.3 0.0021 4.6E-08 53.9 9.5 73 524-596 1-93 (96)
326 PHA03271 envelope glycoprotein 97.2 0.055 1.2E-06 55.9 19.5 217 90-334 198-433 (490)
327 cd05766 IgC_MHC_II_beta Class 97.1 0.0038 8.3E-08 52.3 9.6 69 685-754 12-85 (94)
328 PF08205 C2-set_2: CD80-like C 97.1 0.0027 5.9E-08 52.8 8.8 64 159-222 14-86 (89)
329 cd05767 IgC_MHC_II_alpha Class 97.1 0.0028 6.2E-08 52.9 8.7 63 685-751 13-83 (94)
330 smart00407 IGc1 Immunoglobulin 97.1 0.0021 4.5E-08 51.5 7.5 62 526-587 2-71 (75)
331 cd07698 IgC_MHC_I_alpha3 Class 97.1 0.0046 1E-07 51.9 10.0 67 523-589 14-85 (93)
332 PF00041 fn3: Fibronectin type 97.1 0.0035 7.6E-08 51.4 9.2 80 46-126 2-83 (85)
333 smart00407 IGc1 Immunoglobulin 97.1 0.003 6.5E-08 50.5 7.9 63 689-752 1-71 (75)
334 cd07699 IgC_L Immunoglobulin C 97.0 0.002 4.2E-08 54.9 6.9 31 318-348 14-47 (100)
335 cd05889 Ig1_DNAM-1_like First 97.0 0.0045 9.9E-08 51.9 8.7 73 688-761 1-93 (96)
336 smart00406 IGv Immunoglobulin 97.0 0.002 4.3E-08 52.4 6.2 58 689-747 1-80 (81)
337 smart00406 IGv Immunoglobulin 96.9 0.0027 5.8E-08 51.6 6.7 59 525-583 1-81 (81)
338 cd05770 IgC_beta2m Class I maj 96.9 0.0071 1.5E-07 50.4 9.1 66 684-751 12-82 (93)
339 cd04981 IgV_H Immunoglobulin ( 96.9 0.0035 7.6E-08 55.2 7.3 69 517-585 6-97 (117)
340 cd07699 IgC_L Immunoglobulin C 96.9 0.0031 6.7E-08 53.7 6.6 70 683-753 13-90 (100)
341 cd05766 IgC_MHC_II_beta Class 96.8 0.0095 2.1E-07 49.9 9.3 69 521-589 12-85 (94)
342 PF07654 C1-set: Immunoglobuli 96.8 0.0091 2E-07 48.8 8.8 68 686-754 7-79 (83)
343 cd05719 Ig2_PVR_like Second im 96.8 0.0089 1.9E-07 50.1 8.7 74 687-762 15-92 (95)
344 cd05847 IgC_CH2_IgE CH2 domain 96.7 0.0065 1.4E-07 50.8 7.6 70 686-756 13-90 (94)
345 KOG4597|consensus 96.7 0.0033 7.1E-08 65.6 6.7 122 638-764 166-292 (560)
346 KOG1480|consensus 96.7 0.00075 1.6E-08 74.4 2.2 85 309-396 132-223 (909)
347 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0044 9.6E-08 46.7 5.5 52 521-586 5-56 (65)
348 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0026 5.6E-08 47.9 4.2 51 158-219 6-56 (65)
349 KOG1480|consensus 96.7 0.0006 1.3E-08 75.1 1.2 86 674-763 131-218 (909)
350 PHA03269 envelope glycoprotein 96.6 0.18 3.9E-06 53.4 18.6 84 421-551 287-373 (566)
351 PHA03271 envelope glycoprotein 96.6 0.23 4.9E-06 51.6 18.5 35 518-552 255-292 (490)
352 PHA03273 envelope glycoprotein 96.6 0.23 4.9E-06 52.5 18.9 80 423-550 198-280 (486)
353 cd07696 IgC_CH3 CH3 domain (th 96.5 0.0074 1.6E-07 50.7 6.6 71 519-589 10-88 (96)
354 cd05770 IgC_beta2m Class I maj 96.5 0.023 4.9E-07 47.4 9.3 67 521-588 13-84 (93)
355 PF07654 C1-set: Immunoglobuli 96.5 0.024 5.1E-07 46.4 9.4 64 523-589 8-79 (83)
356 PHA02914 Immunoglobulin-like d 96.4 0.27 6E-06 50.6 17.7 82 681-763 273-380 (500)
357 cd05719 Ig2_PVR_like Second im 96.4 0.022 4.7E-07 47.8 8.6 67 160-226 16-88 (95)
358 cd07691 Ig_CD3_gamma_delta Imm 96.4 0.0069 1.5E-07 46.0 4.9 49 523-585 6-54 (69)
359 cd07703 Ig2_Nectin-2_like Seco 96.4 0.024 5.1E-07 47.5 8.7 72 688-761 16-91 (95)
360 cd05767 IgC_MHC_II_alpha Class 96.4 0.025 5.4E-07 47.3 8.8 64 522-588 14-85 (94)
361 cd05847 IgC_CH2_IgE CH2 domain 96.4 0.013 2.9E-07 49.0 7.1 68 522-589 13-88 (94)
362 cd05768 IgC_CH4 CH4 domain (fo 96.4 0.0084 1.8E-07 51.1 6.0 68 684-752 13-91 (102)
363 cd07703 Ig2_Nectin-2_like Seco 96.4 0.017 3.6E-07 48.4 7.5 70 160-229 16-91 (95)
364 cd07697 IgC_TCR_gamma T cell r 96.3 0.014 2.9E-07 49.0 7.0 63 684-750 13-83 (96)
365 PHA03269 envelope glycoprotein 96.3 0.27 5.9E-06 52.1 17.3 207 97-334 287-515 (566)
366 cd07691 Ig_CD3_gamma_delta Imm 96.3 0.013 2.8E-07 44.5 5.6 49 687-750 6-54 (69)
367 cd05768 IgC_CH4 CH4 domain (fo 96.2 0.0096 2.1E-07 50.8 5.7 68 521-588 14-92 (102)
368 PF08204 V-set_CD47: CD47 immu 96.2 0.0093 2E-07 52.2 5.5 77 686-764 26-120 (130)
369 PHA03270 envelope glycoprotein 96.2 0.49 1.1E-05 49.6 18.4 204 98-334 181-404 (466)
370 cd07689 Ig2_VCAM-1 Second immu 96.2 0.021 4.5E-07 47.3 7.0 68 683-752 11-86 (99)
371 cd05769 IgC_TCR_beta T cell re 96.1 0.036 7.7E-07 48.2 8.3 77 318-394 15-102 (115)
372 cd05769 IgC_TCR_beta T cell re 96.0 0.026 5.7E-07 49.0 7.5 76 683-759 14-99 (115)
373 cd04985 IgC_CH1 CH1 domain (fi 96.0 0.041 8.8E-07 46.2 8.3 65 686-752 15-87 (95)
374 PHA02633 hypothetical protein; 96.0 0.017 3.6E-07 42.7 5.0 40 562-601 16-55 (63)
375 cd05721 IgV_CTLA-4 Immunoglobu 96.0 0.044 9.5E-07 47.0 8.3 68 680-748 6-93 (115)
376 cd07697 IgC_TCR_gamma T cell r 95.9 0.037 7.9E-07 46.4 7.5 65 523-587 16-85 (96)
377 KOG0196|consensus 95.9 0.24 5.2E-06 56.0 15.6 131 5-136 397-535 (996)
378 PHA02982 hypothetical protein; 95.8 0.095 2.1E-06 49.0 10.2 111 154-282 34-168 (251)
379 PHA02633 hypothetical protein; 95.8 0.023 5E-07 42.0 5.0 40 195-234 16-55 (63)
380 cd07696 IgC_CH3 CH3 domain (th 95.8 0.024 5.1E-07 47.7 5.9 70 683-753 10-87 (96)
381 cd07704 Ig2_Nectin-3-4_like Se 95.5 0.096 2.1E-06 43.7 8.5 70 153-222 10-86 (97)
382 cd07704 Ig2_Nectin-3-4_like Se 95.5 0.074 1.6E-06 44.4 7.6 78 682-761 11-93 (97)
383 PHA03273 envelope glycoprotein 95.4 1.2 2.6E-05 47.4 17.8 116 99-222 198-327 (486)
384 KOG0196|consensus 95.4 1.1 2.4E-05 51.0 18.4 178 53-234 340-535 (996)
385 KOG4597|consensus 95.3 0.042 9.1E-07 57.7 6.7 121 112-233 165-293 (560)
386 cd05721 IgV_CTLA-4 Immunoglobu 95.2 0.091 2E-06 45.1 7.5 66 152-217 6-94 (115)
387 cd07689 Ig2_VCAM-1 Second immu 95.1 0.075 1.6E-06 44.1 6.5 63 156-219 12-85 (99)
388 cd04985 IgC_CH1 CH1 domain (fi 94.9 0.13 2.9E-06 43.0 7.8 62 158-220 15-87 (95)
389 PHA02914 Immunoglobulin-like d 94.9 5.6 0.00012 41.4 29.8 68 153-220 20-104 (500)
390 PHA03042 CD47-like protein; Pr 94.9 0.13 2.7E-06 50.5 8.4 72 687-766 31-107 (286)
391 cd04986 IgC_CH2 CH2 domain (se 94.8 0.068 1.5E-06 44.9 5.5 67 520-588 16-90 (99)
392 cd04986 IgC_CH2 CH2 domain (se 94.5 0.1 2.2E-06 43.9 6.0 70 682-753 14-90 (99)
393 PF07354 Sp38: Zona-pellucida- 94.5 0.17 3.6E-06 49.6 8.3 49 536-587 11-60 (271)
394 PF08204 V-set_CD47: CD47 immu 94.2 0.16 3.4E-06 44.7 6.7 79 521-600 25-121 (130)
395 PHA02982 hypothetical protein; 94.1 0.53 1.1E-05 44.2 10.1 82 517-598 33-135 (251)
396 PHA03042 CD47-like protein; Pr 91.7 0.73 1.6E-05 45.4 7.8 79 159-241 31-114 (286)
397 PF07354 Sp38: Zona-pellucida- 91.5 0.55 1.2E-05 46.1 6.7 49 700-752 11-60 (271)
398 PHA03283 envelope glycoprotein 91.5 6.9 0.00015 42.6 15.3 98 420-544 131-233 (542)
399 PF11465 Receptor_2B4: Natural 91.3 0.32 6.9E-06 40.7 4.3 39 2-40 67-106 (108)
400 PHA03286 envelope glycoprotein 90.8 14 0.0003 39.4 16.4 97 420-544 124-225 (492)
401 PF11465 Receptor_2B4: Natural 90.7 1.2 2.6E-05 37.4 7.0 71 162-232 30-107 (108)
402 cd00063 FN3 Fibronectin type 3 90.3 4.2 9.2E-05 32.7 10.6 75 50-126 7-84 (93)
403 PHA03283 envelope glycoprotein 90.0 4.9 0.00011 43.7 12.7 40 195-234 132-171 (542)
404 PHA03282 envelope glycoprotein 89.9 7.9 0.00017 41.4 13.8 32 413-446 116-147 (540)
405 PF00041 fn3: Fibronectin type 87.7 0.93 2E-05 36.7 4.6 30 623-652 55-84 (85)
406 PF06328 Lep_receptor_Ig: Ig-l 87.6 3.4 7.5E-05 34.0 7.7 65 680-747 11-80 (89)
407 KOG4367|consensus 86.7 1.8 3.9E-05 45.1 6.7 76 56-133 451-527 (699)
408 PF06832 BiPBP_C: Penicillin-B 86.7 9 0.00019 31.5 9.9 74 671-757 9-86 (89)
409 PHA02865 MHC-like TNF binding 86.3 2.2 4.8E-05 44.2 7.1 21 689-709 216-238 (338)
410 PHA03281 envelope glycoprotein 85.5 9.5 0.00021 41.5 11.4 36 416-451 468-503 (642)
411 PF02124 Marek_A: Marek's dise 85.5 37 0.00079 32.9 15.7 57 692-750 94-159 (211)
412 PF05790 C2-set: Immunoglobuli 84.5 5.4 0.00012 32.1 7.2 70 519-598 8-78 (80)
413 PF05790 C2-set: Immunoglobuli 84.1 7.3 0.00016 31.3 7.8 35 197-231 43-78 (80)
414 PF02480 Herpes_gE: Alphaherpe 84.0 2.5 5.3E-05 46.3 6.7 94 423-544 89-189 (439)
415 PHA03286 envelope glycoprotein 83.8 19 0.00042 38.4 12.6 40 195-234 125-165 (492)
416 KOG1026|consensus 83.6 1.1 2.4E-05 51.5 3.9 74 518-601 202-275 (774)
417 PF06328 Lep_receptor_Ig: Ig-l 82.7 10 0.00022 31.2 8.3 68 151-218 10-83 (89)
418 PHA03189 UL14 tegument protein 80.7 9.4 0.0002 38.4 8.6 113 681-795 61-203 (348)
419 PHA03281 envelope glycoprotein 79.6 60 0.0013 35.7 14.6 91 423-543 298-393 (642)
420 PF03921 ICAM_N: Intercellular 79.5 34 0.00073 28.3 10.4 82 148-235 7-89 (91)
421 KOG1026|consensus 79.1 0.36 7.8E-06 55.3 -1.8 209 518-766 62-275 (774)
422 PHA03052 Hypothetical protein; 76.2 11 0.00024 28.7 5.8 35 680-714 5-42 (69)
423 smart00060 FN3 Fibronectin typ 74.5 36 0.00078 26.0 11.3 69 52-123 9-81 (83)
424 PHA03189 UL14 tegument protein 73.0 33 0.00072 34.6 9.9 73 517-589 61-158 (348)
425 PF02010 REJ: REJ domain; Int 72.4 4.1 8.9E-05 45.3 4.3 72 161-234 2-79 (440)
426 PF02124 Marek_A: Marek's dise 71.2 1E+02 0.0023 29.9 12.9 138 175-334 8-162 (211)
427 PF02480 Herpes_gE: Alphaherpe 71.0 5.8 0.00012 43.5 4.8 82 97-180 87-189 (439)
428 PHA02865 MHC-like TNF binding 71.0 14 0.00031 38.4 7.3 63 323-385 216-305 (338)
429 cd05890 Ig2_Nectin-1_like Seco 69.8 22 0.00047 29.4 6.6 68 525-597 22-97 (98)
430 PF06832 BiPBP_C: Penicillin-B 67.5 67 0.0015 26.3 9.7 56 161-225 31-86 (89)
431 PF02010 REJ: REJ domain; Int 60.5 11 0.00023 42.0 4.6 204 563-780 37-310 (440)
432 PF00801 PKD: PKD domain; Int 59.6 38 0.00082 26.1 6.3 60 683-756 7-68 (69)
433 KOG0200|consensus 57.9 54 0.0012 38.2 9.9 39 724-763 113-151 (609)
434 PHA03112 IL-18 binding protein 56.1 19 0.00041 32.1 4.3 27 684-710 35-63 (141)
435 PF03921 ICAM_N: Intercellular 53.0 1.3E+02 0.0028 24.9 11.3 78 517-602 12-89 (91)
436 COG5475 Uncharacterized small 53.0 26 0.00057 25.3 3.7 37 413-451 8-44 (60)
437 smart00089 PKD Repeats in poly 52.5 1.1E+02 0.0024 24.0 8.3 63 686-763 13-78 (79)
438 PHA03112 IL-18 binding protein 51.5 54 0.0012 29.4 6.4 72 521-592 36-124 (141)
439 PHA03240 envelope glycoprotein 49.5 20 0.00044 34.0 3.6 72 682-754 33-130 (258)
440 PHA03052 Hypothetical protein; 48.8 38 0.00083 25.9 4.3 35 313-347 4-42 (69)
441 PRK14081 triple tyrosine motif 48.8 5E+02 0.011 30.3 38.8 74 518-600 396-477 (667)
442 cd05890 Ig2_Nectin-1_like Seco 47.3 48 0.001 27.4 5.0 67 161-230 22-97 (98)
443 PHA03282 envelope glycoprotein 47.2 35 0.00077 36.7 5.3 36 5-40 123-160 (540)
444 PF11049 KSHV_K1: Glycoprotein 42.3 37 0.0008 25.7 3.3 44 691-750 2-45 (71)
445 cd00063 FN3 Fibronectin type 3 38.9 1E+02 0.0022 24.2 6.2 33 621-653 54-86 (93)
446 PF02440 Adeno_E3_CR1: Adenovi 38.1 83 0.0018 24.0 4.7 21 684-708 2-22 (63)
447 PHA03240 envelope glycoprotein 36.6 46 0.001 31.7 3.8 32 192-223 100-131 (258)
448 smart00089 PKD Repeats in poly 35.5 2.2E+02 0.0047 22.3 8.6 63 522-598 13-78 (79)
449 PF11141 DUF2914: Protein of u 35.5 2E+02 0.0044 22.0 7.8 57 703-763 8-65 (66)
450 TIGR03000 plancto_dom_1 Planct 33.8 1.9E+02 0.0041 22.9 6.1 50 620-693 25-74 (75)
451 PF00801 PKD: PKD domain; Int 33.1 1.5E+02 0.0032 22.6 5.8 59 518-590 6-67 (69)
452 PF11141 DUF2914: Protein of u 32.0 2.4E+02 0.0051 21.7 7.9 57 175-231 8-65 (66)
453 smart00060 FN3 Fibronectin typ 31.7 1E+02 0.0022 23.3 4.9 26 623-648 56-81 (83)
454 KOG0200|consensus 30.4 2.5E+02 0.0054 32.8 9.6 107 98-218 12-138 (609)
455 PF02440 Adeno_E3_CR1: Adenovi 26.4 1.9E+02 0.0041 22.1 4.9 54 520-577 2-63 (63)
456 PRK14081 triple tyrosine motif 25.9 1.1E+03 0.024 27.5 44.1 73 519-600 493-573 (667)
457 COG5475 Uncharacterized small 22.3 3.2E+02 0.007 20.0 5.2 28 729-759 19-46 (60)
458 PRK13211 N-acetylglucosamine-b 22.3 1.1E+03 0.024 26.3 12.1 101 494-598 297-404 (478)
459 KOG4802|consensus 20.9 6.5E+02 0.014 27.1 9.1 52 603-655 189-240 (516)
No 1
>KOG3513|consensus
Probab=100.00 E-value=8.5e-56 Score=492.71 Aligned_cols=523 Identities=24% Similarity=0.312 Sum_probs=400.8
Q ss_pred ceEEEEEeec-cCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCC-C-CceEEEecCCeEEEEeeCCCCCCCCCeEEEEE
Q psy2776 5 SATLTIVKFE-DKDLGDYTISLSNALGQA-SATTKVTLLSAPGAP-D-TPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL 80 (803)
Q Consensus 5 ~~~L~I~~~~-~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~p-~-~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~ 80 (803)
.++|.|.+.. ..|.|.|+|.|.|..|.. +..+.|..-..+..+ . ...+...+|..+.|.|.+|++.+. ..-||+
T Consensus 95 ~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~--l~~~W~ 172 (1051)
T KOG3513|consen 95 GGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPP--LRYYWM 172 (1051)
T ss_pred cCceEecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCC--ccEEeh
Confidence 5789999887 889999999999999986 445666655444433 2 234556789999999999988665 333333
Q ss_pred -EeecCCCceeEEEe-eeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEE-cC-CCCCCCCeeecc-CcCee
Q psy2776 81 -ESHDKDEFMVWNKI-ETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV-KA-PVDAEAPVIQEP-LKDSV 155 (803)
Q Consensus 81 -~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~-~~-~~~~~~p~i~~~-~~~~~ 155 (803)
.....-....-.+. ....+.|.|.++..+|.+.|.|.+.+..-....-.....+.+ .. .....+|.|... +.+..
T Consensus 173 ~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~ 252 (1051)
T KOG3513|consen 173 LNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETET 252 (1051)
T ss_pred hccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCccc
Confidence 22222111121122 234799999999999999999999884322111111112221 11 112345655554 45677
Q ss_pred eecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeee
Q psy2776 156 AGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235 (803)
Q Consensus 156 v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~ 235 (803)
...|+.+.|+|.+.|+|.|+|.|+|.+.....++..+.+...+|.|.+++.+|+|.|+|.|+|..|.......|.|...|
T Consensus 253 a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P 332 (1051)
T KOG3513|consen 253 ALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPP 332 (1051)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCc
Confidence 88999999999999999999999999987667777888888999999999999999999999999988888889888773
Q ss_pred cccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCce
Q psy2776 236 IKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315 (803)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (803)
.++. .+..
T Consensus 333 -----------------------------------------------------------------------~w~~-~~~d 340 (1051)
T KOG3513|consen 333 -----------------------------------------------------------------------YWLQ-KPQD 340 (1051)
T ss_pred -----------------------------------------------------------------------hhhc-ccce
Confidence 2222 2345
Q ss_pred eeeccccceeEEEEe-cCCceeeEEeecCeeccccce---eEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 316 TLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESAR---HIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
..+..|+.++|.|.+ |.|.|+|.|+|||+++....+ ..+. +
T Consensus 341 ~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-~---------------------------------- 385 (1051)
T KOG3513|consen 341 TEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-D---------------------------------- 385 (1051)
T ss_pred eEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-C----------------------------------
Confidence 556679999999999 999999999999999986544 2222 1
Q ss_pred eecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCc
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADT 471 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 471 (803)
..|.|.+++..|+|.|+|.|+|..|..-.+
T Consensus 386 -------------------------------g~L~is~v~~~dsg~YQC~A~Nk~G~i~an------------------- 415 (1051)
T KOG3513|consen 386 -------------------------------GTLIISNVQESDSGVYQCIAENKYGTIYAN------------------- 415 (1051)
T ss_pred -------------------------------CEEEEEecccccCeEEEeeeecccceEeee-------------------
Confidence 138899999999999999999999998884
Q ss_pred ccCCchhhhhcccccccccccceeeeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 472 RVKPPMKRVLQKLAVPFSYKTRTTNLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
..|.|.. +|.++.-.. -....+..|.++.|.|...+.|.|.++|.|+++.+.
T Consensus 416 -----------------------A~L~V~a~~P~f~~~p~----~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~ 468 (1051)
T KOG3513|consen 416 -----------------------AELKVLASAPVFPLNPV----ERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLL 468 (1051)
T ss_pred -----------------------eEEEEEccCCCCCCCcc----ceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccc
Confidence 4455543 355433221 123577889999999999999999999999999777
Q ss_pred CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcc
Q psy2776 551 DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVEN 630 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 630 (803)
.+.++.+.. .++|.|.+++.+|+|.|+|.|.|..|.+.....|.|..
T Consensus 469 ~~~r~~i~e---dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd------------------------------ 515 (1051)
T KOG3513|consen 469 QSGRIRILE---DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD------------------------------ 515 (1051)
T ss_pred cCceEEECC---CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec------------------------------
Confidence 777777654 57899999999999999999999999999999999977
Q ss_pred cccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEee
Q psy2776 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFR 708 (803)
Q Consensus 631 ~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~ 708 (803)
+++|...+....+..|+.++|+|.+.-+|.. .|.|++
T Consensus 516 -----------------------------------------~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~ 554 (1051)
T KOG3513|consen 516 -----------------------------------------ATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKK 554 (1051)
T ss_pred -----------------------------------------CceEEeccchhhhccCceEEEEeecccCCCcceEEEEEE
Confidence 7778888888999999999999999766554 799999
Q ss_pred CCeeccCC---CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCCCcccCCccceeee
Q psy2776 709 NNKPLLSS---PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDLNHVHY 785 (803)
Q Consensus 709 ~~~~l~~~---~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~~~~~~~~~~ 785 (803)
||..++.. ..+.+........|.|.++ +.+|+|.|.|+|.-.+-+.++.+.|.|++++-+|+.+...++...+++.
T Consensus 555 nG~~id~~~~~~~~~~~~~~~~g~L~i~nv-~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~l 633 (1051)
T KOG3513|consen 555 NGRPIDFNPDGDHFEINDGSDSGRLTIANV-SLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARL 633 (1051)
T ss_pred CCEEhhccCCCCceEEeCCcCccceEEEee-ccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEE
Confidence 99988743 2333332222367999999 7999999999999999999999999998888777778877677665555
Q ss_pred eee
Q psy2776 786 LAQ 788 (803)
Q Consensus 786 ~~~ 788 (803)
+|.
T Consensus 634 sW~ 636 (1051)
T KOG3513|consen 634 SWS 636 (1051)
T ss_pred Eee
Confidence 543
No 2
>KOG3513|consensus
Probab=100.00 E-value=3.8e-47 Score=423.68 Aligned_cols=578 Identities=22% Similarity=0.270 Sum_probs=402.6
Q ss_pred CCCceEEEEEeeccCCcEEEEEEEEcCCCCc---eeeEEEEEe-------cCCCCCC-Cc-eEEEecCCeEEEEeeCCCC
Q psy2776 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA---SATTKVTLL-------SAPGAPD-TP-EIVGRSDSSVTLHWRPPQD 69 (803)
Q Consensus 2 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~-------~~p~~p~-~~-~~~~~~~~~v~l~c~~p~~ 69 (803)
.+..++|.+.++..+|.|.|.|.|.+...+. .....|.+. .+|..+. .| ......|+.|.|.|.+-..
T Consensus 189 ~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~ 268 (1051)
T KOG3513|consen 189 SQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGN 268 (1051)
T ss_pred ecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCC
Confidence 3567899999999999999999999864432 334555552 2232221 11 2344569999999996311
Q ss_pred CCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeec
Q psy2776 70 DGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQE 149 (803)
Q Consensus 70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~ 149 (803)
..|...|. +...............+..|.|.+++.+|.|.|+|.|.|..|. ..+.. .+.+ ..+|.++.
T Consensus 269 --P~P~i~W~--k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~--~~~~~-~v~v-----~a~P~w~~ 336 (1051)
T KOG3513|consen 269 --PTPQIKWR--KVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS--ATHSG-HVTV-----YAPPYWLQ 336 (1051)
T ss_pred --CCCcEEEE--eCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc--ceeeE-EEEE-----ecCchhhc
Confidence 22222221 1111111122223334789999999999999999999999984 33332 2333 46788888
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-e---EEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-N---ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
.+++..+..|+++.|.|.+.|.|.|.+.|++|+.++... + ..++ ...|+|.+++.+|+|.|+|.|+|..|....
T Consensus 337 ~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~--~g~L~is~v~~~dsg~YQC~A~Nk~G~i~a 414 (1051)
T KOG3513|consen 337 KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID--DGTLIISNVQESDSGVYQCIAENKYGTIYA 414 (1051)
T ss_pred ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe--CCEEEEEecccccCeEEEeeeecccceEee
Confidence 899999999999999999999999999999999988732 2 3443 457999999999999999999999999999
Q ss_pred EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcc
Q psy2776 226 SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305 (803)
Q Consensus 226 s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (803)
++.|.|...+.....
T Consensus 415 nA~L~V~a~~P~f~~----------------------------------------------------------------- 429 (1051)
T KOG3513|consen 415 NAELKVLASAPVFPL----------------------------------------------------------------- 429 (1051)
T ss_pred eeEEEEEccCCCCCC-----------------------------------------------------------------
Confidence 999999876211100
Q ss_pred ccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
........+..|..+.|.|.+ +.|.+.+.|.|+++.+..+.++.+..+|+
T Consensus 430 ----~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGt------------------------- 480 (1051)
T KOG3513|consen 430 ----NPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGT------------------------- 480 (1051)
T ss_pred ----CccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCc-------------------------
Confidence 001122344569999999999 99999999999988777777887777774
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v 464 (803)
|.|.+++.+|+|.|+|.|.|..|....
T Consensus 481 ----------------------------------------L~I~n~t~~DaG~YtC~A~N~~G~a~~------------- 507 (1051)
T KOG3513|consen 481 ----------------------------------------LEISNVTRSDAGKYTCVAENKLGKAES------------- 507 (1051)
T ss_pred ----------------------------------------EEecccCcccCcEEEEEEEcccCccce-------------
Confidence 889999999999999999999999998
Q ss_pred eeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC--CCeeEE
Q psy2776 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP--RPEISW 542 (803)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p--~~~v~W 542 (803)
...|.|..++.+.. .+....+..|+++.|+|.+.-.+ ...|.|
T Consensus 508 -----------------------------~~~L~Vkd~tri~~------~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W 552 (1051)
T KOG3513|consen 508 -----------------------------TGNLIVKDATRITL------APSNTDVKVGESVTLTCEASHDPSLDITFTW 552 (1051)
T ss_pred -----------------------------EEEEEEecCceEEe------ccchhhhccCceEEEEeecccCCCcceEEEE
Confidence 55666666665422 22467788999999999987554 467899
Q ss_pred eeCCeeecCC---CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE-----------------
Q psy2776 543 MKNGAEITDS---KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI----------------- 602 (803)
Q Consensus 543 ~~~g~~i~~~---~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p----------------- 602 (803)
.+||+.+... ..+.+.-..+.+.|+|.+++.+|+|.|+|.|.....+.+..+.|.|.++|
T Consensus 553 ~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~ 632 (1051)
T KOG3513|consen 553 KKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTAR 632 (1051)
T ss_pred EECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEE
Confidence 9999977533 33333322233689999999999999999999999999999999999988
Q ss_pred -----------------eEeeecccccEEEeeeeCCcc---ceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 603 -----------------IQQQEKNSLKFTKVATLDPST---LQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 603 -----------------~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
++.+......|+...++.... .+.++.+|.|..+|.||++|.|.+|.+++|.......+.
T Consensus 633 lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ 712 (1051)
T KOG3513|consen 633 LSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTP 712 (1051)
T ss_pred EEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecC
Confidence 566666677787777443322 257789999999999999999999999988766554433
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC---------ceEEeeCCeeccCCCCeEEEeeCceEEEEEe
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP---------SIVWFRNNKPLLSSPKKREIFDGENIILELK 733 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---------~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~ 733 (803)
.. .|.. -+.++....|+.-.|.-+-...|.- .|.|+..|..-.=.. .+..+.+...+.+.
T Consensus 713 ea-------~P~~--~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~--~~v~~~d~~~~V~~ 781 (1051)
T KOG3513|consen 713 EA-------APSV--NPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKE--VIVSNQDQPRYVVS 781 (1051)
T ss_pred CC-------CCcc--CCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccce--eEecccCCceEEEc
Confidence 22 2221 2334555566666665555432221 477877665411000 11111112233333
Q ss_pred cCCCCCCc--eeEEEEEEccCcceeeeEEEEEE----eeccCCCCCcccCCccceeeeee
Q psy2776 734 EADSETDA--GDYKVVATNELGSATHGARVTVD----VEKVGRPSINSIDIDLNHVHYLA 787 (803)
Q Consensus 734 ~v~~~~D~--G~Y~C~a~N~~G~~~~~~~l~V~----~~~~~pp~~~~~~~~~~~~~~~~ 787 (803)
+- +..-. =.....|.|..|....+-...+- .|+.+|+.+.....+...+...|
T Consensus 782 ~~-st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W 840 (1051)
T KOG3513|consen 782 NE-STEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSW 840 (1051)
T ss_pred CC-CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEe
Confidence 32 22222 33467889999999776666653 34444555555566666666666
No 3
>KOG4221|consensus
Probab=100.00 E-value=5.9e-41 Score=370.61 Aligned_cols=518 Identities=21% Similarity=0.292 Sum_probs=374.1
Q ss_pred ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-------------eeeEEEEecccc-----CCeEEEEE
Q psy2776 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-------------TSTTYEVTKLTT-----KHEYMFRV 116 (803)
Q Consensus 55 ~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~i~~~~~-----~d~g~y~c 116 (803)
.+|.++.|.|.+-...+ ..+.+ .|++.+. ++++|.|.++.. -++|.|+|
T Consensus 52 ~~~~svlLecs~~~~~~----~~~~i---------~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc 118 (1381)
T KOG4221|consen 52 MEGSSVLLECSAYAAGG----TSVKI---------EWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQC 118 (1381)
T ss_pred ccccceEEeccccccCC----CCeeE---------EEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEE
Confidence 46889999998754443 22333 3433332 378888988876 88999999
Q ss_pred EEEcc-CccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecC
Q psy2776 117 AAVNA-IGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN 195 (803)
Q Consensus 117 ~a~~~-~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~ 195 (803)
.|.-. .|.. .+.. ..+.+ ...+.|...+.+..+..|+++.|+|.+.+.|.|.+.|.+++.++..........
T Consensus 119 ~atv~~~gsi-~Sr~-a~v~~-----a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp 191 (1381)
T KOG4221|consen 119 LATVEDVGSI-LSRT-AKVAL-----AGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP 191 (1381)
T ss_pred EEEcccccee-ecce-EEEEe-----cccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC
Confidence 99765 2221 2221 22222 355667777888999999999999999999999999999998766332223334
Q ss_pred eeEEEEecCCCCcceEEEEEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEe
Q psy2776 196 VARFTVVNCSESSEGRYTCKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVK 274 (803)
Q Consensus 196 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (803)
...|.|.++++.|.|.|+|.+++...... ..++|.|...+.
T Consensus 192 sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~-------------------------------------- 233 (1381)
T KOG4221|consen 192 SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPG-------------------------------------- 233 (1381)
T ss_pred CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcc--------------------------------------
Confidence 46799999999999999999998765433 346777763310
Q ss_pred eccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeE
Q psy2776 275 SVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHI 353 (803)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~ 353 (803)
...... +...|....+.+|+++.|.|.+ +.|.|++.|.+||+.|.-+....
T Consensus 234 ---------------------------~~~~~~-fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~ri 285 (1381)
T KOG4221|consen 234 ---------------------------ALNKLV-FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRI 285 (1381)
T ss_pred ---------------------------ccccee-eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEE
Confidence 001111 2234566677789999999999 89999999999999887543211
Q ss_pred EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCC
Q psy2776 354 ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433 (803)
Q Consensus 354 ~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 433 (803)
+. .+...|.|.+++.+
T Consensus 286 vl----------------------------------------------------------------~g~~slliS~a~~~ 301 (1381)
T KOG4221|consen 286 VL----------------------------------------------------------------VGGSSLLISNATDD 301 (1381)
T ss_pred EE----------------------------------------------------------------ecccceEEeccccc
Confidence 11 11234889999999
Q ss_pred CceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeec
Q psy2776 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513 (803)
Q Consensus 434 d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 513 (803)
|+|.|+|+|+|....... ..+++|+.+|.+....
T Consensus 302 dSg~YtC~Atn~~D~ida------------------------------------------saev~V~a~P~~~~~p---- 335 (1381)
T KOG4221|consen 302 DSGKYTCRATNTNDSIDA------------------------------------------SAEVTVLAPPGFTKAP---- 335 (1381)
T ss_pred cCceEEEEecCCCccccc------------------------------------------ceEEEEEcCCCCCCCC----
Confidence 999999999994433333 5677888888775543
Q ss_pred cccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.++..+.|.|.+.|.|.|.+.|+|||..+..+..+++... .. |.|..+-..|.|.|.|.++|+.|.+...
T Consensus 336 --~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~--~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 336 --TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGG--GN-LRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred --cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCC--CC-cEEEEEecccchhhhhhhccCcccccch
Confidence 367778899999999999999999999999998888766666542 23 9999999999999999999999999999
Q ss_pred EEEEEeeeE------------------eEeeecccccEEEee---------------eeC---------CccceEEEccc
Q psy2776 594 LSLQVLGYI------------------IQQQEKNSLKFTKVA---------------TLD---------PSTLQYTVENL 631 (803)
Q Consensus 594 ~~l~V~~~p------------------~~~~~~~~~~w~~~~---------------~~~---------~~~~~~~~~~~ 631 (803)
+.|.|...| ....-..+++|.+.. +.+ +...+.+++++
T Consensus 411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl 490 (1381)
T KOG4221|consen 411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNL 490 (1381)
T ss_pred hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeec
Confidence 998666554 111111233333222 111 11278899999
Q ss_pred ccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC----ceEEe
Q psy2776 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWF 707 (803)
Q Consensus 632 ~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~----~v~W~ 707 (803)
.+...|.|||+|.|..|.+.++..+.+.+... +|. . ...+..-.+.|.+.+.|++ .+.||
T Consensus 491 ~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE--------gp~-------~-~~a~ats~~ti~v~WepP~~~n~~I~~y 554 (1381)
T KOG4221|consen 491 SPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE--------GPV-------Q-LQAYATSPTTILVTWEPPPFGNGPITGY 554 (1381)
T ss_pred ccceeEEEEEeccCcccCCccCCceEEecCCC--------CCc-------c-ccccccCcceEEEEecCCCCCCCCceEE
Confidence 99999999999999999999887766654211 111 1 3345677789999999888 89999
Q ss_pred eCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE---eeccCCCC-CcccCCcccee
Q psy2776 708 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD---VEKVGRPS-INSIDIDLNHV 783 (803)
Q Consensus 708 ~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~---~~~~~pp~-~~~~~~~~~~~ 783 (803)
+..-... +.......+.+..++.|.++ .+.+.-.|.|+|.|++|..-.+..++|. ..+.+||. +.....+++.+
T Consensus 555 k~~ys~~-~~~~~~~~~~n~~e~ti~gL-~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsV 632 (1381)
T KOG4221|consen 555 KLFYSED-DTGKELRVENNATEYTINGL-EKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSV 632 (1381)
T ss_pred EEEEEcC-CCCceEEEecCccEEEeecC-CCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeE
Confidence 9765544 33344555666678999999 7899999999999999999888888886 23444555 77666777778
Q ss_pred eeeeeeEE
Q psy2776 784 HYLAQSTE 791 (803)
Q Consensus 784 ~~~~~~~~ 791 (803)
..+|+-.+
T Consensus 633 rVsW~pP~ 640 (1381)
T KOG4221|consen 633 RVSWLPPP 640 (1381)
T ss_pred EEEccCCC
Confidence 87776433
No 4
>KOG4221|consensus
Probab=100.00 E-value=4e-36 Score=332.52 Aligned_cols=635 Identities=20% Similarity=0.227 Sum_probs=416.5
Q ss_pred CceEEEEEeecc-----CCcEEEEEEEEcC-CCC-ceeeEEEEEecCCCCCCCce-EEEecCCeEEEEeeCCCCCCCCCe
Q psy2776 4 DSATLTIVKFED-----KDLGDYTISLSNA-LGQ-ASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLHWRPPQDDGHSPV 75 (803)
Q Consensus 4 ~~~~L~I~~~~~-----~D~G~Y~C~a~n~-~g~-~~~~~~l~V~~~p~~p~~~~-~~~~~~~~v~l~c~~p~~~g~~~~ 75 (803)
.+++|.|.++-. -|+|.|+|.|+-. .|. .+..+.|.+...+.....++ .....|+.+.+.|..... ..+.
T Consensus 94 sNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e--~~p~ 171 (1381)
T KOG4221|consen 94 SNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAE--PVPT 171 (1381)
T ss_pred cCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCc--cCce
Confidence 357888888766 7999999999855 454 36678888888887766554 334569999999986542 1221
Q ss_pred EEEEEEeecCCCceeE--EEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcC
Q psy2776 76 TGYVLESHDKDEFMVW--NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKD 153 (803)
Q Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~ 153 (803)
. .+ .++.. .+.| +.+...++.|.|.+++++|.|.|+|.+.+.+-. ..+....+.+...+.....-.|...+.+
T Consensus 172 i--~w-~kn~~-pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~-r~S~~a~ltv~s~~~~~~~~~fl~~p~~ 246 (1381)
T KOG4221|consen 172 I--MW-LKNDQ-PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQ-RTSNEAELTVLSDPGALNKLVFLDEPSN 246 (1381)
T ss_pred e--EE-ecccc-cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcC-CccceeEEEecCCcccccceeeecCCCc
Confidence 1 11 12111 1122 223334899999999999999999999986533 2344444444434544455567777899
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
..+.+|+++.|.|.+.|.|.|+|.|.+|+..+.-. ++.. .+...|.|.+++.+|+|.|+|+|.|.......++.|.|
T Consensus 247 ~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V 325 (1381)
T KOG4221|consen 247 AVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVL-VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTV 325 (1381)
T ss_pred cccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEE-ecccceEEeccccccCceEEEEecCCCcccccceEEEE
Confidence 99999999999999999999999999999877633 3333 34567999999999999999999998888888899999
Q ss_pred eeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcccccccc
Q psy2776 232 QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK 311 (803)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (803)
..+|. +.+
T Consensus 326 ~a~P~------------------------------------------------------------------------~~~ 333 (1381)
T KOG4221|consen 326 LAPPG------------------------------------------------------------------------FTK 333 (1381)
T ss_pred EcCCC------------------------------------------------------------------------CCC
Confidence 87742 122
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee--
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK-- 388 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~-- 388 (803)
.|......++.++.|.|.+ +.|.+++.|+|||..+..++.+++...+. |.|..+-..|.|.|.|.++|..|...
T Consensus 334 ~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 334 APTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred CCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccch
Confidence 3444555569999999999 89999999999999988888888777665 88888999999999999999776422
Q ss_pred -----------------------------------eeeeec---CCCceeeeeeecCcceeeeeee-EEecCeeEEEEEe
Q psy2776 389 -----------------------------------LKWLDF---GSGGWWFESKYKDDSLIKGRNI-TYENNVARFTVVN 429 (803)
Q Consensus 389 -----------------------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~ 429 (803)
++|-.. +.+...+.+.|+.+.....+.+ +...+ ..+++.+
T Consensus 411 a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g-~~~tv~n 489 (1381)
T KOG4221|consen 411 AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPG-IQVTVQN 489 (1381)
T ss_pred hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCc-eEEEeee
Confidence 223210 1111222233333333322222 22233 7788888
Q ss_pred ccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccce
Q psy2776 430 CSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIK 509 (803)
Q Consensus 430 ~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~ 509 (803)
++..-...++|.|.|..|.... +..|.|..+|..|.
T Consensus 490 l~p~t~Y~~rv~A~n~~g~g~s------------------------------------------S~pLkV~t~pEgp~-- 525 (1381)
T KOG4221|consen 490 LSPLTMYFFRVRAKNEAGSGES------------------------------------------SAPLKVTTQPEGPV-- 525 (1381)
T ss_pred cccceeEEEEEeccCcccCCcc------------------------------------------CCceEEecCCCCCc--
Confidence 8888888888888899988888 44566666665322
Q ss_pred eeeccccceEEeecceeEEEEEEcCcCCC----eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 510 LVDSNLKSQRLSVKSQWKVEVKYFGFPRP----EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 510 ~~~~~~~~~~v~~g~~v~l~C~~~g~p~~----~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
. +..+..-.++|.+...|++ .+.|+|......+ .......+.+...++|.++.+.+.-.|.|+|.|
T Consensus 526 --------~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~-~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N 595 (1381)
T KOG4221|consen 526 --------Q-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD-TGKELRVENNATEYTINGLEKYTEYSIRVVAYN 595 (1381)
T ss_pred --------c-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC-CCceEEEecCccEEEeecCCCccceEEEEEEec
Confidence 2 4556677889999988887 8999998765552 223334455678999999999999999999999
Q ss_pred CCCCeEEEEEEEEeeeE-------------eEeeecccccEEEeee---------------------------eCCccce
Q psy2776 586 AAGSTSLDLSLQVLGYI-------------IQQQEKNSLKFTKVAT---------------------------LDPSTLQ 625 (803)
Q Consensus 586 ~~g~~s~s~~l~V~~~p-------------~~~~~~~~~~w~~~~~---------------------------~~~~~~~ 625 (803)
..|....+..+.|.... +.......+.|..... ......+
T Consensus 596 ~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~ 675 (1381)
T KOG4221|consen 596 SAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQ 675 (1381)
T ss_pred CCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhh
Confidence 99998777777776432 1111112223332221 1125567
Q ss_pred EEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC-eEEEEEEEeecCCC--
Q psy2776 626 YTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKASPAP-- 702 (803)
Q Consensus 626 ~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~p~~-- 702 (803)
+.+.+|+++..|.||+.|.|..|.++++.-....+...-.-...+.+|. ...+..|. .+.+ .-.|++
T Consensus 676 ~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps------~l~~~~g~~si~v----sW~Pp~~~ 745 (1381)
T KOG4221|consen 676 YLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPS------ELHVHPGSNSIVV----SWTPPPHP 745 (1381)
T ss_pred hHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCc------eeeeccCceeEEE----EeCCCCCh
Confidence 7788899999999999999999999887655444422111111111222 22333332 2222 223444
Q ss_pred -------ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE-e---------
Q psy2776 703 -------SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD-V--------- 765 (803)
Q Consensus 703 -------~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~-~--------- 765 (803)
.+-|. .|..+.....+.+.....++. |.++ .....-..+-+|.|..|..-...+-... .
T Consensus 746 ~~~vrgY~ig~r-~g~~~p~~~tIrl~~~~s~y~--l~~L-e~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~ 821 (1381)
T KOG4221|consen 746 NIVVRGYKIGYR-PGSGIPDTGTIRLDEKVSYYN--LEQL-EPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVD 821 (1381)
T ss_pred hhhhcceEEeee-cccCCCCCccEEecceeeEEE--EEec-ccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCC
Confidence 13343 445454444444443344444 4444 2233344577889998887544433221 1
Q ss_pred -eccCCCCCcccCCccceeeeeeeeE
Q psy2776 766 -EKVGRPSINSIDIDLNHVHYLAQST 790 (803)
Q Consensus 766 -~~~~pp~~~~~~~~~~~~~~~~~~~ 790 (803)
+...|-.++....+...+.|.|-++
T Consensus 822 tp~~ppvgv~A~~~S~tsI~v~w~~~ 847 (1381)
T KOG4221|consen 822 TPMLPPVGVRANALSSTSIRVTWADN 847 (1381)
T ss_pred CCCCCcccccccccccceEEEEEecC
Confidence 1112223334444555677777664
No 5
>KOG4222|consensus
Probab=100.00 E-value=4.4e-36 Score=330.48 Aligned_cols=430 Identities=24% Similarity=0.367 Sum_probs=327.2
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-----eeEEEecC-eeEEEEecC--CCCcceEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-----RNITYENN-VARFTVVNC--SESSEGRYT 213 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-----~~~~~~~~-~~~L~i~~v--~~~d~G~Y~ 213 (803)
..+|+|+..+.+..+.-|+.++|.|.+.|.|+|+|.|+|+|..... -++.+..+ ...|++..= ...|.|.|+
T Consensus 29 d~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~ 108 (1281)
T KOG4222|consen 29 DQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYS 108 (1281)
T ss_pred cCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeE
Confidence 4688999999999999999999999999999999999999975432 12333222 122222111 223999999
Q ss_pred EEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 214 CKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 214 C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|.+.|..|.... .+.|.+......
T Consensus 109 cvasn~~g~avSr~a~L~vavlrdd------------------------------------------------------- 133 (1281)
T KOG4222|consen 109 CVASNRLGEAVSRGASLIVAVLRDD------------------------------------------------------- 133 (1281)
T ss_pred eeecCccceeeecCceEEEEEechh-------------------------------------------------------
Confidence 999999997644 455555443100
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeecc--ccceeEEEEcCceeEEEEeec
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIK--ESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~l~i~~~ 368 (803)
|-. .+.......|+.++|+|.- +.|.+++.|.|+|+++. ......+.+.|.
T Consensus 134 ---------------frv-~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~--------- 188 (1281)
T KOG4222|consen 134 ---------------FRV-SPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN--------- 188 (1281)
T ss_pred ---------------ccc-CcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc---------
Confidence 000 1111334459999999997 89999999999999987 333444444442
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
|.|.++...|+|.|.|+++|..|.
T Consensus 189 --------------------------------------------------------LlIsnvrksD~GtY~CVatNmvG~ 212 (1281)
T KOG4222|consen 189 --------------------------------------------------------LLISNVRKSDEGTYACVATNMVGE 212 (1281)
T ss_pred --------------------------------------------------------EEEeccccCCCceeeeeecccccc
Confidence 889999999999999999999998
Q ss_pred eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEE
Q psy2776 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528 (803)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l 528 (803)
.... ...|.|..+|.+- ..++.+.+.+|..+.+
T Consensus 213 ReS~-----------------------------------------~A~lsv~e~P~f~------~rp~~~~v~~g~~~~f 245 (1281)
T KOG4222|consen 213 RESI-----------------------------------------PARLSVQEKPWFW------KRPKDLAVLVGAAAEF 245 (1281)
T ss_pred cccc-----------------------------------------cceeeeccCCccc------cccccceeeccccccc
Confidence 8874 4566777777542 2335788899999999
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE------
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI------ 602 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p------ 602 (803)
.|.+.|.|.|.+.|.|++..++.+ ++.+ ..++.+|.|.+++..|.|.|.|.|.|..|...++..+.|..+|
T Consensus 246 ~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i--~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp 322 (1281)
T KOG4222|consen 246 DCRVGGDPQPTVRWKKDDPSLPRS-RYSI--LDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKP 322 (1281)
T ss_pred ccccCCCCCCceeeeccCCCCCcc-ceee--eeccccccccccCCCcccceeeeccccccccccccceEEecCccccccc
Confidence 999999999999999988777653 3333 3356789999999999999999999999999999999999998
Q ss_pred ----------------eEeeecccccEEEeeeeC----------------CccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 603 ----------------IQQQEKNSLKFTKVATLD----------------PSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 603 ----------------~~~~~~~~~~w~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
.-..+...+.|.+.+..+ .....++++++++.+.+.|-|++.+..|.+
T Consensus 323 ~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 323 RDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred CccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence 222334566677766432 234589999999999999999999999887
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEE
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIIL 730 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L 730 (803)
..-....+.. .+....-+|.+...+.+.+...++.+.|.|.+.|.|.+.+.|+++|-.+......... .....|
T Consensus 403 ~~~a~~~qt~----~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~--~~~~~l 476 (1281)
T KOG4222|consen 403 LTKAYLEQTD----VLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ--QEIGSL 476 (1281)
T ss_pred ccceeEEEEe----eeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce--eeecee
Confidence 5443333222 1222244788888888889999999999999999999999999999887755433222 223469
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|.+. ..-|.|.|+|.|.+..|+..-++.|.|.
T Consensus 477 ~i~dl-~~~DtG~YTc~as~~~ges~wSatl~v~ 509 (1281)
T KOG4222|consen 477 RIRDL-KGPDTGRYTCIASDESGESTWSATLTVE 509 (1281)
T ss_pred eeeee-ecCCCcceeeeccCcccccccceeeEhh
Confidence 99999 7899999999999999999999999985
No 6
>KOG4222|consensus
Probab=100.00 E-value=4.5e-33 Score=306.88 Aligned_cols=464 Identities=24% Similarity=0.372 Sum_probs=327.9
Q ss_pred CcEEEEEEEEcCCCCc-eeeEEEEEecCCC-CCCCc-eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEE
Q psy2776 17 DLGDYTISLSNALGQA-SATTKVTLLSAPG-APDTP-EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNK 93 (803)
Q Consensus 17 D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~-~p~~~-~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~ 93 (803)
|.|.|.|.|.|..|.. +....|.|.-.++ .-..+ .+....|..+.|.|.+|..-....+ .|+-+.+...-...-..
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptv-Sw~Kdg~pl~~~~~~~~ 181 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTV-SWVKDGKPLDHYDVPII 181 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcc-eeecCCCccccccceeE
Confidence 9999999999999976 4445555433222 11111 2445579999999999866443333 23322222111111122
Q ss_pred eeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCC
Q psy2776 94 IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT 173 (803)
Q Consensus 94 ~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~ 173 (803)
...+++.|.|.++..+|+|.|.|.+.|.+|+.+.... .+.+ ..+|.|...+.+..+..|..+.+.|.+.|.|.
T Consensus 182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A--~lsv-----~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~ 254 (1281)
T KOG4222|consen 182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPA--RLSV-----QEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ 254 (1281)
T ss_pred EEecCCcEEEeccccCCCceeeeeecccccccccccc--eeee-----ccCCccccccccceeecccccccccccCCCCC
Confidence 2235899999999999999999999999998654432 2222 56788999999999999999999999999999
Q ss_pred CeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeE
Q psy2776 174 PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKL 253 (803)
Q Consensus 174 p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~ 253 (803)
|.+.|.+++..++..+........+|.|.++++.|.|.|.|.+.|..|....++.++|+..|-
T Consensus 255 P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~----------------- 317 (1281)
T KOG4222|consen 255 PTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPS----------------- 317 (1281)
T ss_pred CceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcc-----------------
Confidence 999999998888877777777778999999999999999999999999999999999998841
Q ss_pred EEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC
Q psy2776 254 VIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS 332 (803)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~ 332 (803)
|.. -+..+.+..|..++|.|.+ |+
T Consensus 318 ------------------------------------------------------f~k-kp~dq~v~lg~~vt~pc~~~gn 342 (1281)
T KOG4222|consen 318 ------------------------------------------------------FGK-KPRDQKVALGGTVTFPCETLGN 342 (1281)
T ss_pred ------------------------------------------------------ccc-ccCccccccCceEEeeeecCCC
Confidence 111 1233445568999999999 99
Q ss_pred CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceee
Q psy2776 333 PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIK 412 (803)
Q Consensus 333 p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (803)
|.+.+.|.|.|...-. ... +....+..|.+.
T Consensus 343 P~PavfW~keg~q~ll------f~~--------~p~~~~~r~svs----------------------------------- 373 (1281)
T KOG4222|consen 343 PPPAVFWLKEGSQDLL------FSA--------SPPSSNGRGSVS----------------------------------- 373 (1281)
T ss_pred CCcceEEeccCcceec------ccC--------CCCCcCccceec-----------------------------------
Confidence 9999999987532110 000 000000001111
Q ss_pred eeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhccccccccccc
Q psy2776 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKT 492 (803)
Q Consensus 413 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (803)
. ..+|+|.+++..|.|.|.|...+..|.....+. .+.+.+
T Consensus 374 -------~-~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~--------~~qt~~------------------------ 413 (1281)
T KOG4222|consen 374 -------P-TGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAY--------LEQTDV------------------------ 413 (1281)
T ss_pred -------C-CCCcccccccccccceEeeccccccccccccee--------EEEEee------------------------
Confidence 1 115999999999999999998887777666432 111110
Q ss_pred ceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec
Q psy2776 493 RTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV 572 (803)
Q Consensus 493 ~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~ 572 (803)
+.---||- +......++.+.++..+.|.|.+.|.|.+.+.|+++|-.+..... ++. ....+.|+|.+..
T Consensus 414 ----~~~~rPpp-----~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~-~~s-~~~~~~l~i~dl~ 482 (1281)
T KOG4222|consen 414 ----LTDSRPPP-----IIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDS-RIS-QQEIGSLRIRDLK 482 (1281)
T ss_pred ----eccCCCCc-----eeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCc-ccc-eeeeceeeeeeee
Confidence 11101111 233344577888899999999999999999999999877655431 111 1235789999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEEEEEEEeeeE------------------------eEeeecccccEEEeeee---------
Q psy2776 573 RADTSTYTVTATNAAGSTSLDLSLQVLGYI------------------------IQQQEKNSLKFTKVATL--------- 619 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p------------------------~~~~~~~~~~w~~~~~~--------- 619 (803)
..|.|.|+|.|.+..|..+.++.|.|.+.. --.+..-.+.|......
T Consensus 483 ~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yi 562 (1281)
T KOG4222|consen 483 GPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYI 562 (1281)
T ss_pred cCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhH
Confidence 999999999999999999999999998664 11122234556555441
Q ss_pred -----------------CCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 620 -----------------DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 620 -----------------~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
.-+...+.|..|+|...|.|.|+|.|+.|.+.++.......
T Consensus 563 ieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vr 620 (1281)
T KOG4222|consen 563 IEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVR 620 (1281)
T ss_pred HHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccc
Confidence 01345788999999999999999999999887766555443
No 7
>KOG4194|consensus
Probab=99.96 E-value=3.2e-28 Score=251.78 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=219.4
Q ss_pred CCccccccccCCceeeeccccceeEEEEe-c--CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVEL-S--SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~--~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
..|++.+..++.....+ .|+.++|+|.+ + ..+.++.|.++++.+..-. +. ++. +.+.
T Consensus 500 DspkpqI~~qPe~~~al-~g~nirftC~a~sssasplsi~WR~dnevq~rv~---ve-d~a-~~~~-------------- 559 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSAL-IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD---VE-DFA-TFLS-------------- 559 (873)
T ss_pred CCCCcceecCchHhhhh-hccceEEEEEeccCCCCCceeEeeeccccCcccc---hh-cch-hhhh--------------
Confidence 45666666655444444 49999999999 4 4567899999976443211 00 000 0000
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
+ .++|.. + .-......|.+.|++..|+|.|+|+++|..|..-+
T Consensus 560 q-------------------------~r~~~~--~---e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStys------- 602 (873)
T KOG4194|consen 560 Q-------------------------NRNGTF--G---EREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYS------- 602 (873)
T ss_pred h-------------------------hccCcc--c---hhhhhhheeeeeeeecccCceEEEEEecccCcchh-------
Confidence 0 000000 0 00123456999999999999999999999998877
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP 538 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~ 538 (803)
+.+.|.|...|.+-.. +....+..|+.+.|.|.+.|.|.|
T Consensus 603 ----------------------------------qk~KltV~~~PsFtkt------P~dltl~tg~mArl~CaAtG~P~P 642 (873)
T KOG4194|consen 603 ----------------------------------QKAKLTVNQAPSFTKT------PEDLTLRTGQMARLECAATGHPRP 642 (873)
T ss_pred ----------------------------------heeEEEeeccCccccC------cccceeecccceeeeeeccCCCCc
Confidence 3677888887765333 357889999999999999999999
Q ss_pred eeEEeeCCee-ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEee
Q psy2776 539 EISWMKNGAE-ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVA 617 (803)
Q Consensus 539 ~v~W~~~g~~-i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~ 617 (803)
.+.|.|+|.. .+.....++....+.-...|.||+.+|.|.|+|.|.|..|..+++++|.|.+
T Consensus 643 eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------------- 705 (873)
T KOG4194|consen 643 EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------------- 705 (873)
T ss_pred ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEec-----------------
Confidence 9999998764 5554444444444556789999999999999999999999999999999988
Q ss_pred eeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEe
Q psy2776 618 TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK 697 (803)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~ 697 (803)
.|.|..++..+.|..|+++.|+|.+.
T Consensus 706 ------------------------------------------------------~p~f~~PL~~~~V~~get~vlqC~a~ 731 (873)
T KOG4194|consen 706 ------------------------------------------------------TPSFSIPLEDQLVVVGETLVLQCLAE 731 (873)
T ss_pred ------------------------------------------------------CCcccccccceEEEecceEEEEEecC
Confidence 45566677888999999999999999
Q ss_pred ecCC-CceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 698 ASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 698 g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|.|. |...|+|++++|...++...... .-.|.+.+. ..+|+|.|+|...|..|.-...+.+.|
T Consensus 732 ~~~a~pr~~W~k~d~pil~t~rh~f~d~--dQllvv~~~-~~~daG~yTcem~~~~~~~~~~i~l~~ 795 (873)
T KOG4194|consen 732 GAPADPRLEWFKEDKPILITERHTFPDG--DQLLVVKEN-LVEDAGIYTCEMSNTLGTERIHICLLV 795 (873)
T ss_pred CCCCCccccccCCCCceEEeecccCCCC--CeEEEEEeh-hhhhcceEEEEEEeeccceeeEEEEEE
Confidence 9988 99999999999987766543322 336778888 689999999999999999877777766
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=7.9e-25 Score=229.74 Aligned_cols=210 Identities=18% Similarity=0.219 Sum_probs=145.5
Q ss_pred EEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC--CC
Q psy2776 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ--SP 502 (803)
Q Consensus 425 L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~--~~ 502 (803)
|.|.++..+|+|.|+|.|.|..|....+ +.|.|. .+
T Consensus 84 l~i~~~~~~DsG~Y~C~a~N~~g~~~~s------------------------------------------~~L~V~~~~~ 121 (326)
T PHA02785 84 MLILNPTQSDSGIYICITKNETYCDMMS------------------------------------------LNLTIVSVSE 121 (326)
T ss_pred EEEcccCcccCeEEEEEEECCCcceEEE------------------------------------------EEEEEEecCC
Confidence 6688889999999999999988766652 222222 11
Q ss_pred CCCccceeeeccccceEEeecceeEEEEE-----EcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVK-----YFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~-----~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
|.+... ...+.+.+|..+.|.|. ..+.|++.++|++++. +. ..++.. ..++.|.|.+++.+|+|
T Consensus 122 ~~~~~~------~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~~~---~~~~~L~i~~v~~~d~G 190 (326)
T PHA02785 122 SNIDLI------SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRLKQ---RTPGIITIEDVRKNDAG 190 (326)
T ss_pred Ccccee------eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-CcceEe---cCCCeEEEeecChhhCe
Confidence 111100 11345678999999997 3467889999988642 32 233322 12468999999999999
Q ss_pred EEEEEEEcCCCCeEEEE----EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 578 TYTVTATNAAGSTSLDL----SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~----~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|+|.|.|..|.....+ .|.|..+
T Consensus 191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~---------------------------------------------------- 218 (326)
T PHA02785 191 YYTCVLKYIYGDKTYNVTRIVKLEVRDR---------------------------------------------------- 218 (326)
T ss_pred EEEEEEEeccCCEEEeEEEEEEEEEecc----------------------------------------------------
Confidence 99999999988765433 3333221
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC---ceEEeeCCeeccCCC-----CeEEEe--
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNKPLLSSP-----KKREIF-- 723 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~~~l~~~~-----~~~~~~-- 723 (803)
..||.+ ..+....+..|+.++|.|.+.|.|.+ .+.|++||..|.... ++....
T Consensus 219 ----------------~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~ 281 (326)
T PHA02785 219 ----------------IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKI 281 (326)
T ss_pred ----------------CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCc
Confidence 115544 34466778889999999999998874 799999999886432 211111
Q ss_pred ---eC---ceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 724 ---DG---ENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 724 ---~~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
+. ....|.|.++ +.+|+|.|+|.|.|..|....
T Consensus 282 ~~~~~~~~~~~~L~I~~V-~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 282 YTTDKRRVITSRLNINPV-KEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred cccccceeeeEEEEECCc-chhcCeeeEEEEEeccCceEe
Confidence 11 1357999999 899999999999998865543
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=1.2e-24 Score=228.41 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=172.2
Q ss_pred eeeecCCcEEEEEEE-----CccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 154 SVAGFQSSVTLECVV-----SGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
..+.+|+.+.|.|.+ .|.|.+++.|+|++.... .....+ ....|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-~~~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND-RIIPID-NGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-eEEEcc-CCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 445689999999997 688999999999975322 222222 2345889999999999999999999988888888
Q ss_pred EEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccc
Q psy2776 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308 (803)
Q Consensus 229 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (803)
|.|..... +...+
T Consensus 114 L~V~~~~~-------------------------------------------------------------------~~~~~ 126 (326)
T PHA02785 114 LTIVSVSE-------------------------------------------------------------------SNIDL 126 (326)
T ss_pred EEEEecCC-------------------------------------------------------------------Cccce
Confidence 88865510 00000
Q ss_pred cccCCceeeeccccceeEEEE-----e-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 309 LSKLPSVTLVPHLGDATFQVE-----L-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~-----~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
.+..+.+.+|+.+.|.|. . ++|.+.+.|++++. +.. .++...
T Consensus 127 ---~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~-~r~~~~--------------------------- 174 (326)
T PHA02785 127 ---ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN-KRLKQR--------------------------- 174 (326)
T ss_pred ---eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC-cceEec---------------------------
Confidence 011123456889999996 2 57899999987642 211 111111
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
....|.|.+++.+|.|.|+|.|.|..|...... .
T Consensus 175 --------------------------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~-------t- 208 (326)
T PHA02785 175 --------------------------------------TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNV-------T- 208 (326)
T ss_pred --------------------------------------CCCeEEEeecChhhCeEEEEEEEeccCCEEEeE-------E-
Confidence 012489999999999999999999877654321 0
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC---Ce
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR---PE 539 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~---~~ 539 (803)
+.+.|.|..+...|.+. .+....+..|+.+.|.|.+.|.|. +.
T Consensus 209 ------------------------------~~v~l~V~~~~~pp~~~----~p~~~~~~~G~~v~L~C~a~g~P~~~~~~ 254 (326)
T PHA02785 209 ------------------------------RIVKLEVRDRIIPPTMQ----LPEGVVTSIGSNLTIACRVSLRPPTTDAD 254 (326)
T ss_pred ------------------------------EEEEEEEeccCCCceec----CCCcEEecCCCcEEEEEEEECCCCCCCce
Confidence 12223332211111110 112466778999999999999887 48
Q ss_pred eEEeeCCeeecCCC-----cEEEEec--------CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 540 ISWMKNGAEITDSK-----ACRIFID--------EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 540 v~W~~~g~~i~~~~-----~~~~~~~--------~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.|+|||..|.... ++..... .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 255 v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 255 VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 99999999886421 2221110 014689999999999999999999987543
No 10
>KOG4194|consensus
Probab=99.93 E-value=9.1e-25 Score=226.41 Aligned_cols=276 Identities=21% Similarity=0.344 Sum_probs=209.3
Q ss_pred CCCCCeeeccCcCeeeecCCcEEEEEEECc--cCCCeeEEEEcCeecccee------EEEe----------cCeeEEEEe
Q psy2776 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSG--VPTPDIKWYKDDSLIKGRN------ITYE----------NNVARFTVV 202 (803)
Q Consensus 141 ~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g--~p~p~i~W~~~~~~~~~~~------~~~~----------~~~~~L~i~ 202 (803)
+...|+|...|..+....|..++|+|.+.+ ..+-.+.|.++......-. +..+ .....|.+.
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 356688888888888889999999999986 3444799999887443211 1111 123579999
Q ss_pred cCCCCcceEEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 203 NCSESSEGRYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
||...|+|.|+|++.|..|.... .+.|.|...|.
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~Ps--------------------------------------------- 614 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPS--------------------------------------------- 614 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEeeccCc---------------------------------------------
Confidence 99999999999999999998765 58888887741
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCee-ccccc--eeEEEEc
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKE-IKESA--RHIITSR 357 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~-l~~~~--~~~~~~~ 357 (803)
+.+.|....+..|+.+.|.|.+ |.|.|+|.|.|+|-. ++... +..+..+
T Consensus 615 ---------------------------FtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpe 667 (873)
T KOG4194|consen 615 ---------------------------FTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPE 667 (873)
T ss_pred ---------------------------cccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCC
Confidence 2223444555669999999999 999999999998644 44322 2222111
Q ss_pred CceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCcee
Q psy2776 358 GTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGR 437 (803)
Q Consensus 358 ~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 437 (803)
| -.+-|.|++.+|+|.
T Consensus 668 --------------d--------------------------------------------------d~f~Itnvk~eD~Gi 683 (873)
T KOG4194|consen 668 --------------D--------------------------------------------------DVFFITNVKIEDQGI 683 (873)
T ss_pred --------------C--------------------------------------------------CEEEEecccccccce
Confidence 1 126689999999999
Q ss_pred EEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc
Q psy2776 438 YTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517 (803)
Q Consensus 438 Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 517 (803)
|+|.|.|..|..+. ...|.|...|.+.. ++++
T Consensus 684 YtC~A~n~AG~isa------------------------------------------nAtL~V~e~p~f~~------PL~~ 715 (873)
T KOG4194|consen 684 YTCTAQNVAGQISA------------------------------------------NATLTVLETPSFSI------PLED 715 (873)
T ss_pred eEEeeeccccceee------------------------------------------ceEEEEecCCcccc------cccc
Confidence 99999999999888 45667777765432 2457
Q ss_pred eEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.+..|+++.|+|...+.|+ |.+.|+|++++|.-..+... .++..-|.+.+...+|+|.|+|.+.|..|..-.-+.+
T Consensus 716 ~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l 793 (873)
T KOG4194|consen 716 QLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICL 793 (873)
T ss_pred eEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEE
Confidence 89999999999999999988 99999999988765544332 3345678889999999999999999999988777777
Q ss_pred EEeeeE
Q psy2776 597 QVLGYI 602 (803)
Q Consensus 597 ~V~~~p 602 (803)
.|...+
T Consensus 794 ~~~~~~ 799 (873)
T KOG4194|consen 794 LVYQKK 799 (873)
T ss_pred EEeecC
Confidence 765543
No 11
>KOG3515|consensus
Probab=99.87 E-value=2.8e-20 Score=204.27 Aligned_cols=571 Identities=17% Similarity=0.122 Sum_probs=335.1
Q ss_pred EEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceee
Q psy2776 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTR 132 (803)
Q Consensus 53 ~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~ 132 (803)
....|..|.|.|.....++...+..|...... .-++.......|...+...+.-+.|.|++.|..|. .+....
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~--~~~~~~ 90 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGE-----HGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM--PSRCPM 90 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCccc-----ccccccccCCceeeecchhhhhhhhhhhhcccccC--ceecce
Confidence 45579999999997544332222211111111 12223334677888888899999999999988443 111111
Q ss_pred EEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEEC--ccCCCeeEEEEcCeeccce---eEE-----Ee---cCeeEE
Q psy2776 133 YVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS--GVPTPDIKWYKDDSLIKGR---NIT-----YE---NNVARF 199 (803)
Q Consensus 133 ~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~--g~p~p~i~W~~~~~~~~~~---~~~-----~~---~~~~~L 199 (803)
.+.. ..+|.-...........+..+.+.|... +.|.+.+.|..+....... ... .. .....|
T Consensus 91 ~l~v-----~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l 165 (741)
T KOG3515|consen 91 ILDV-----DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLL 165 (741)
T ss_pred eecc-----ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccce
Confidence 1111 2333333334445556788999999765 5778889999887643211 000 00 123568
Q ss_pred EEecCCCCcceEEEEEEEcCC---cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeec
Q psy2776 200 TVVNCSESSEGRYTCKATNEA---GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSV 276 (803)
Q Consensus 200 ~i~~v~~~d~G~Y~C~a~n~~---g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (803)
.+...+.+|.|.|+|.|.|.. +.......+.|....
T Consensus 166 ~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~----------------------------------------- 204 (741)
T KOG3515|consen 166 KQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC----------------------------------------- 204 (741)
T ss_pred eeEEEEecCCceeEcccccccCccccccceeEeeccccc-----------------------------------------
Confidence 888889999999999999853 222223333333221
Q ss_pred cccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEE
Q psy2776 277 SKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHII 354 (803)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~ 354 (803)
...........+...+|+.+.|.|.+ ++|.+.+.|+++..++..+....-
T Consensus 205 ----------------------------~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~ 256 (741)
T KOG3515|consen 205 ----------------------------KGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQ 256 (741)
T ss_pred ----------------------------ccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccC
Confidence 00111111222455679999999977 799999999999887765422211
Q ss_pred EEcCc-e-eEEEEeecCCCCCccEEEEEec-------ccc--------------------ceeeeeeecCCCceeeeeee
Q psy2776 355 TSRGT-Q-RKLVIKRVTQDDETDIGVLALN-------VKS--------------------VSKLKWLDFGSGGWWFESKY 405 (803)
Q Consensus 355 ~~~~~-~-~~l~i~~~~~~d~g~y~c~~~~-------~~~--------------------~~~~~~~~~~~~~~~~~~~~ 405 (803)
...+. . +.+.+..-..++.-...|.+.| .+- ...+.|...++++...+.|+
T Consensus 257 ~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~ 336 (741)
T KOG3515|consen 257 EPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWY 336 (741)
T ss_pred CCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccceeccCCCCccceeee
Confidence 22221 2 2222222222334456688887 110 11144555555555555666
Q ss_pred cCcceeeeee-----e--EEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchh
Q psy2776 406 KDDSLIKGRN-----I--TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMK 478 (803)
Q Consensus 406 ~~~~~~~~~~-----~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 478 (803)
++.....+.. . ........+.+......|.|.|+|.+.+..+....++
T Consensus 337 ~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss------------------------- 391 (741)
T KOG3515|consen 337 KDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSS------------------------- 391 (741)
T ss_pred ccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccccccccc-------------------------
Confidence 6555444321 1 1122345566777888999999999999885555433
Q ss_pred hhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCCCcEEE
Q psy2776 479 RVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDSKACRI 557 (803)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~~~~~~ 557 (803)
.+.+.+..+|.+-.... ......+++.....-.+.++|. +.+.|.+++.++..-....+
T Consensus 392 ---------------~~~l~~l~~p~~L~~~~-----~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~ 451 (741)
T KOG3515|consen 392 ---------------SFLLPVLPSPAFLVRHK-----TAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVV 451 (741)
T ss_pred ---------------ceeccccCCchhhhhcc-----cceeeccCccccccCcccCCCcccchhheecceecccccCceE
Confidence 45556666665432221 2233444554444444446665 68999999988876655444
Q ss_pred EecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE------------------------eEeeecccccE
Q psy2776 558 FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI------------------------IQQQEKNSLKF 613 (803)
Q Consensus 558 ~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p------------------------~~~~~~~~~~w 613 (803)
..-.....+.+.++...|.|.|.|.|+|..|.+...+.+.+...| -.........|
T Consensus 452 ~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~ 531 (741)
T KOG3515|consen 452 RVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHE 531 (741)
T ss_pred EeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcc
Confidence 433344555577899999999999999999999888888887766 11122334556
Q ss_pred EEeeeeCC-------------ccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccc
Q psy2776 614 TKVATLDP-------------STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFE 680 (803)
Q Consensus 614 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~ 680 (803)
.+..+... ....+.+.....--+|.+.|.+.| .+.. +....+-. .. .++.......
T Consensus 532 ~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~p--A~~~~~l~-~~-------s~~~v~~~tp 600 (741)
T KOG3515|consen 532 PRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPP--AGLSLVLK-AY-------SALIVTVRTP 600 (741)
T ss_pred cccCCCCcccccccccccccCCccceeecccccccccceEEeecC-CCCc--cccceEEE-ec-------ccccccccCC
Confidence 66654331 223445555556667888888887 3322 21111111 11 1222222222
Q ss_pred ee-EEecC-CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-----CceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 681 EK-TVKEK-GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-----GENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 681 ~~-~v~~g-~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+ +..+| ..++..|.+.|.|.+.++|-|+......+.++..... +....+.+..+ -..|.+ ..|.+.|.+|
T Consensus 601 ~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~y~-~~c~t~n~lg 678 (741)
T KOG3515|consen 601 NMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHI-DGSDYE-NGCTTQNLLG 678 (741)
T ss_pred ceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCc-chhhhc-ceeeecccCC
Confidence 22 22222 2889999999999999999998777555555433321 22334555555 456666 9999999999
Q ss_pred ceeeeEEEE
Q psy2776 754 SATHGARVT 762 (803)
Q Consensus 754 ~~~~~~~l~ 762 (803)
.+..+..+.
T Consensus 679 ~~~v~~~~~ 687 (741)
T KOG3515|consen 679 SDHVSGAIH 687 (741)
T ss_pred Cccccceec
Confidence 988666544
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.81 E-value=1.2e-18 Score=171.19 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=119.8
Q ss_pred ceEEeecceeEEEEEEcCcC-----------CCeeEEeeCCeee--cCC-Cc---EEEEe---cCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----------RPEISWMKNGAEI--TDS-KA---CRIFI---DEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----------~~~v~W~~~g~~i--~~~-~~---~~~~~---~~~~~~L~i~~v~~~ds 576 (803)
...+.+|+++.|.|.+.+.| .+++.|+|++... ... .+ ..+.. ...+..|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 57789999999999987754 3489999987542 111 11 00010 11246899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
|.|+|+|.|..|....++.|.|...
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~------------------------------------------------------- 135 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSG------------------------------------------------------- 135 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecC-------------------------------------------------------
Confidence 9999999999888888888777321
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEe-----ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEE
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-----ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILE 731 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-----g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~ 731 (803)
+ ....+.+|+.+.|.|.+. |.|.|.+.|+|||.+|..+.++.+..++ .+|.
T Consensus 136 ----------------~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~--~~L~ 191 (227)
T PHA02826 136 ----------------T------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNN--STLV 191 (227)
T ss_pred ----------------C------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCC--CEEE
Confidence 1 123467799999999986 3467899999999999877776554333 4799
Q ss_pred EecCCCCCCceeEEEEEEccCcce
Q psy2776 732 LKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
|.++ +.+|+|.|+|.|+...+..
T Consensus 192 I~~V-~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 192 IKSA-THDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred ECcC-CHHhCEEEEEEEEEeECCE
Confidence 9999 7999999999999976444
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.73 E-value=5.1e-17 Score=159.72 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=60.8
Q ss_pred cCeeeecCCcEEEEEEECccC-----------CCeeEEEEcCeec--cc--ee--------EEEecCeeEEEEecCCCCc
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP-----------TPDIKWYKDDSLI--KG--RN--------ITYENNVARFTVVNCSESS 208 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p-----------~p~i~W~~~~~~~--~~--~~--------~~~~~~~~~L~i~~v~~~d 208 (803)
....+.+|+++.|.|.+.+.| .+.+.|+|++... .. .+ .........|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999987644 3479999987642 10 10 1112234689999999999
Q ss_pred ceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 209 EGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
+|.|+|.|.|..+..+.++.|.|.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~ 133 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFD 133 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEe
Confidence 999999999988887777777773
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.73 E-value=4.4e-17 Score=138.68 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=86.1
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.|...+....+..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+.++.+......+.|.|.++ ..+|+|.|+|.|+|.+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~-~~~D~G~Ytc~a~N~~ 79 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEG-QQEHCGCYTLEVENKL 79 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCC-ChhhCEEEEEEEEcCC
Confidence 567888889999999999999999999999999999999998888887777777889999999 7999999999999999
Q ss_pred cceeeeEEEEEEeec
Q psy2776 753 GSATHGARVTVDVEK 767 (803)
Q Consensus 753 G~~~~~~~l~V~~~~ 767 (803)
|.+.+++.|.|...+
T Consensus 80 G~~~~~~~l~V~~~P 94 (98)
T cd05762 80 GSRQAQVNLTVVDKP 94 (98)
T ss_pred CceeEEEEEEEecCC
Confidence 999999999996544
No 15
>KOG3515|consensus
Probab=99.72 E-value=1.3e-16 Score=175.68 Aligned_cols=455 Identities=15% Similarity=0.148 Sum_probs=270.0
Q ss_pred eeecCCcEEEEEEECccCC-CeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEEEEe
Q psy2776 155 VAGFQSSVTLECVVSGVPT-PDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~ 232 (803)
-+..|+.|.|.|.+.++|+ +.+.|++.+..+....... ...+|.........-+.|.|++.|+.+.... ...+.|.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~ 95 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATI--ADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVD 95 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccccccccc--cCCceeeecchhhhhhhhhhhhcccccCceecceeeccc
Confidence 6788999999999997554 5799999987776322222 3357888888999999999999999665443 3445554
Q ss_pred eeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccC
Q psy2776 233 GKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKL 312 (803)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (803)
..+.-... .
T Consensus 96 ~~pa~~~~-----------------------------------------------------------------------~ 104 (741)
T KOG3515|consen 96 YPPACLPE-----------------------------------------------------------------------L 104 (741)
T ss_pred cCcccccc-----------------------------------------------------------------------c
Confidence 44210000 0
Q ss_pred CceeeeccccceeEEEEe---cCCceeeEEeecCeeccccce-eEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL---SSPDIQVKWLKKGKEIKESAR-HIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~---~~p~~~i~W~~~g~~l~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
-+.. ...+..+.+.|.+ +.|.+.+.|..++.-...... ......+.
T Consensus 105 ~e~~-~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a----------------------------- 154 (741)
T KOG3515|consen 105 GEIF-QVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGA----------------------------- 154 (741)
T ss_pred cchh-hhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccc-----------------------------
Confidence 0001 1236778899965 688999999998665443211 00000000
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
+. ........|.+.....++.|+|+|.|.+..........
T Consensus 155 ----------------------~g----ss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~-------------- 194 (741)
T KOG3515|consen 155 ----------------------LG----SSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAK-------------- 194 (741)
T ss_pred ----------------------cC----ceeccccceeeEEEEecCCceeEcccccccCccccccc--------------
Confidence 00 00011234777778899999999999996433333210
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCe
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGA 547 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~ 547 (803)
...+.+..+.....+.- ....+.+.+|+.+.|.|.+. |+|.+.++|+++..
T Consensus 195 -------------------------~~~i~v~~~~~~~~~~~---~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~ 246 (741)
T KOG3515|consen 195 -------------------------QLTIIVEAPCKGIGITG---AQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSR 246 (741)
T ss_pred -------------------------eeEeecccccccceecc---hhhcCcccccceEEEEehhhcCCcchhhhhccccc
Confidence 23333333332221111 11236678899999999854 57889999999887
Q ss_pred eecCCCcEEEEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE-----------------------
Q psy2776 548 EITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI----------------------- 602 (803)
Q Consensus 548 ~i~~~~~~~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p----------------------- 602 (803)
.+..+....-...++ .+++.+..-..++.-...|.+.| .+. .+..+.+..++
T Consensus 247 ~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~--~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~ 323 (741)
T KOG3515|consen 247 PQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLA--ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCV 323 (741)
T ss_pred cchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccc--cceeeecccccccccccCccccccccccccccee
Confidence 665531111111111 13344444344445567799998 111 11222222222
Q ss_pred -eEeeecccccEEEeeeeC---------------CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccC
Q psy2776 603 -IQQQEKNSLKFTKVATLD---------------PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL 666 (803)
Q Consensus 603 -~~~~~~~~~~w~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~ 666 (803)
....+.....|++....- .......+......+.+.|.|.|-|..+....+....+..
T Consensus 324 ~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~------ 397 (741)
T KOG3515|consen 324 SSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPV------ 397 (741)
T ss_pred ccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccc------
Confidence 444555666777744221 1234566778889999999999999885554444333322
Q ss_pred CCCCCCCeeEec-cceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 667 GSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 667 ~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
.+ +|.|+.. .......+++.+...-.+.|.|. +.+.|.+.+-.+..........-.....+.+.++ ...|.|.|
T Consensus 398 --l~-~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v-~~~d~g~y 473 (741)
T KOG3515|consen 398 --LP-SPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNV-SRSDGGSY 473 (741)
T ss_pred --cC-CchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeecccccccccee-eeccCCcc
Confidence 22 3344433 33344445554444444446654 5899999998887665543333333345667778 78999999
Q ss_pred EEEEEccCcceeeeEEEEEEeeccCCCCCccc-------CCccceeeeeeeeEEEecccc
Q psy2776 745 KVVATNELGSATHGARVTVDVEKVGRPSINSI-------DIDLNHVHYLAQSTEVDVTST 797 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 797 (803)
.|.|.|..|.+...+.+.++ .-|.+... +.+.....|-.++.|.|...-
T Consensus 474 ~~tatns~gg~~~~~~~~~~----~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~ 529 (741)
T KOG3515|consen 474 GLTATNSPGGAQAYLLLGVH----TSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMH 529 (741)
T ss_pred eeeeccCCCceeeEEeeccc----cCCcccccccccccCCCCcccceeeccccccchhhh
Confidence 99999999999887776664 22222222 222346788888888776543
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.62 E-value=3.8e-15 Score=125.83 Aligned_cols=90 Identities=23% Similarity=0.410 Sum_probs=82.6
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
||.|+..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+......+.|.|.++ ..+|+|.|+|.|.|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKV-QMSDEGNYTVVVENS 81 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCC-CcccCEeEEEEEEcC
Confidence 7889999999999999999999999999999999999999998888887776666789999999 789999999999999
Q ss_pred CcceeeeEEEE
Q psy2776 752 LGSATHGARVT 762 (803)
Q Consensus 752 ~G~~~~~~~l~ 762 (803)
+|..+.++.|+
T Consensus 82 ~G~~~~~~~l~ 92 (92)
T cd05747 82 EGKQEAQFTLT 92 (92)
T ss_pred CCCEeEEEEeC
Confidence 99999888763
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=2.3e-15 Score=125.55 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=76.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++.++....++ ...+ ..|.|.++ +.+|+|.|+|.|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v-~~~D~G~Y~C~A~N~ 75 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNI-QPEDEGTYECEAENI 75 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcC-ChhhCEEEEEEEEcC
Confidence 578888899999999999999999999999999999999888655433 2233 37999999 799999999999999
Q ss_pred CcceeeeEEEEEE
Q psy2776 752 LGSATHGARVTVD 764 (803)
Q Consensus 752 ~G~~~~~~~l~V~ 764 (803)
+|.+...+.|.|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd05851 76 KGKDKHQARVYVQ 88 (88)
T ss_pred CCceEEEEEEEEC
Confidence 9999999998873
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=7e-15 Score=125.11 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=80.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+..|+.+.|.|.+.|.|++.+.|+|+|..|..+.++.+......+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 36788999999999999999999999999999998877888777777899999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|.+.|
T Consensus 88 l~V~~~P 94 (98)
T cd05762 88 LTVVDKP 94 (98)
T ss_pred EEEecCC
Confidence 9998876
No 19
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.61 E-value=8.1e-15 Score=123.78 Aligned_cols=90 Identities=36% Similarity=0.630 Sum_probs=85.7
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.|...+....+.+|+++.|.|.+.|.|.+.+.|+++|.++..+.++.+..++..+.|.|.++ +.+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNV-TREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSE-SGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCC-ChhhCEEEEEEEEECC
Confidence 678888899999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred cceeeeEEEEE
Q psy2776 753 GSATHGARVTV 763 (803)
Q Consensus 753 G~~~~~~~l~V 763 (803)
|..++.+.|.|
T Consensus 80 g~~~~~~~l~V 90 (90)
T PF07679_consen 80 GEATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred CEEEEEEEEEC
Confidence 99999998886
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.60 E-value=1.2e-14 Score=120.53 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=72.6
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.+.+..|+++.|.|.+.|.|.|.+.|++++.++... .++.+........|.|.++ ..+|+|.|+|.|.|.+|++++++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGA-EREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCC-ccCcCEEEEEEEEeCCCcEEEEE
Confidence 467889999999999999999999999999999764 4666666666789999999 79999999999999999999988
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8875
No 21
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.60 E-value=9.8e-15 Score=124.24 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=73.0
Q ss_pred ceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEeeC-----ceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 680 EEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
....+.+|+.+.|.|.+.| .|+|.+.|+|+|.+|.......+.... ...+|.|.++ ..+|+|.|+|.|+|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRL-KESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeec-CHhhCeeEEEEEECCCc
Confidence 3578999999999999999 899999999999999866555444332 2468999999 89999999999999999
Q ss_pred ceeeeEEEEEEe
Q psy2776 754 SATHGARVTVDV 765 (803)
Q Consensus 754 ~~~~~~~l~V~~ 765 (803)
.++..+.|.|.|
T Consensus 90 ~~~~t~~L~V~v 101 (101)
T cd04975 90 SKSLTFELYVNV 101 (101)
T ss_pred cEEEEEEEEEEC
Confidence 999999999864
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.59 E-value=1.4e-14 Score=122.37 Aligned_cols=83 Identities=29% Similarity=0.489 Sum_probs=73.7
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
....+.+|+++.|.|.+.|.|.|.+.|+|+|.++..+.++.+..+ +....|.|.++ +.+|+|.|+|.|.|.+|.++..
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGV-SSEDSGKYGIVVKNKYGGETVD 87 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccC-ChhhCEEEEEEEEECCCcceEE
Confidence 346889999999999999999999999999999988888777654 45678999999 7899999999999999999988
Q ss_pred EEEEE
Q psy2776 759 ARVTV 763 (803)
Q Consensus 759 ~~l~V 763 (803)
+.|.|
T Consensus 88 ~~v~v 92 (92)
T cd05737 88 VTVSV 92 (92)
T ss_pred EEEeC
Confidence 87765
No 23
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.56 E-value=1.2e-14 Score=115.96 Aligned_cols=73 Identities=27% Similarity=0.462 Sum_probs=65.8
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+++.|.|.+.|.|.|.+.|+|++..+..+.++.+..++ .|.|.++ +.+|+|.|.|.|+|.+|+++.++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v-~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNI-TKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcC-ChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999999999999999998888787765443 5999999 799999999999999999999998875
No 24
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.56 E-value=1.7e-14 Score=115.48 Aligned_cols=73 Identities=36% Similarity=0.520 Sum_probs=63.0
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeC-ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDG-ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|.+|.. +.++.+..++ ...+|.|.++ +.+|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~-~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNV-NKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCC-ChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999974 3566665543 3458999999 799999999999999999999999875
No 25
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=3.6e-14 Score=118.27 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=68.5
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEe--e--CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIF--D--GENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~--~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
|+.++|.|.+.|.|++.+.|++++.++..+ .++.+.. . ...++|.|.++ ..+|+|.|+|.|.|.+|.++..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~-~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPT-VREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCC-CcccCEEEEEEEEcCCCcceEEEEE
Confidence 789999999999999999999999988654 3554443 1 22367999999 7899999999999999999999999
Q ss_pred EEEeeccC
Q psy2776 762 TVDVEKVG 769 (803)
Q Consensus 762 ~V~~~~~~ 769 (803)
.|..+|.+
T Consensus 80 ~V~~~P~~ 87 (88)
T cd05735 80 TVQEPPDP 87 (88)
T ss_pred EEeCCCCC
Confidence 99754433
No 26
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.56 E-value=4.2e-14 Score=118.91 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=72.7
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.............|.|.++ ..+|.|.|+|.|.|.+|++.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNI-TSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecC-CcccCEEEEEEEECCCCcee
Confidence 34556678999999999999999999999999999887655433333445678999999 78999999999999999999
Q ss_pred eeEEEEE
Q psy2776 757 HGARVTV 763 (803)
Q Consensus 757 ~~~~l~V 763 (803)
+++.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 9988875
No 27
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.54 E-value=6.1e-14 Score=119.74 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=74.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-----CCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----PKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.|+|...+....+..|+.++|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++ +.+|+|.|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v-~~~D~G~Y~C 80 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYI-QYTDAGEYLC 80 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecC-ccCcCEEEEE
Confidence 567766666666667899999999999999999999998877533 2333344445578999999 7899999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy2776 747 VATNELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+|.++.++.|.|
T Consensus 81 ~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 81 TASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEecCCCCeeEEEEEEC
Confidence 99999999999998875
No 28
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.54 E-value=2.6e-14 Score=115.17 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=64.9
Q ss_pred cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+... .+|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v-~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRV-ALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeC-CHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 589999999999999999999999999877666544322 37999999 799999999999999999999988875
No 29
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.54 E-value=5.1e-14 Score=120.09 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee------CceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD------GENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~------~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..++..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+.+...... ...++|.|.++ ..+|+|.|+|.|.|.+|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRA-KEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeC-CHHHCEEEEEEEEcCCce
Confidence 46788899999999999999999999999999987665433221 12368999999 799999999999999999
Q ss_pred eeeeEEEEEEe
Q psy2776 755 ATHGARVTVDV 765 (803)
Q Consensus 755 ~~~~~~l~V~~ 765 (803)
.+.++.|.|.|
T Consensus 91 ~~~t~~l~V~v 101 (101)
T cd05859 91 KSYTFALQIQV 101 (101)
T ss_pred EEEEEEEEEEC
Confidence 99999999863
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.53 E-value=6.7e-14 Score=112.94 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=67.4
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.+.|.|.+.|.|.|.+.|+|+|.++..+.++.+........|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNA-ERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCC-CcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999998888887777777889999999 799999999999999999999888875
No 31
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.53 E-value=7.9e-14 Score=119.26 Aligned_cols=90 Identities=21% Similarity=0.395 Sum_probs=73.3
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--CeeccC-----CCCeEEEeeCceEEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLLS-----SPKKREIFDGENIILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y 744 (803)
+|+|.. +.+..+.+|++++|.|.+.|.|.|.+.|+++ +..+.. +.++.+........|.|.++ +.+|+|.|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v-~~~D~G~Y 79 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDV-KLSDSGRY 79 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeC-CcCCCEEE
Confidence 577754 6688999999999999999999999999994 444432 23555544445678999999 79999999
Q ss_pred EEEEEccCcceeeeEEEEE
Q psy2776 745 KVVATNELGSATHGARVTV 763 (803)
Q Consensus 745 ~C~a~N~~G~~~~~~~l~V 763 (803)
+|.|.|.+|.+..++.|.|
T Consensus 80 ~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEeccCCcceeEEEEeC
Confidence 9999999999999888865
No 32
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.53 E-value=1e-13 Score=114.90 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=73.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+ .++.+...+..+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467889999999999999999999999999999764 4666666666789999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 875
No 33
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=7.7e-14 Score=116.34 Aligned_cols=88 Identities=30% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
+|.|...+.+..+.+|+.+.|.|.+.|+|.|.+.|+|++..+.... ........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EISMSGAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 4678888889999999999999999999999999999988775432 222234579999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy2776 224 ETSCTLLVQ 232 (803)
Q Consensus 224 ~~s~~l~V~ 232 (803)
..++.|.|+
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd05851 80 KHQARVYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 999988874
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.52 E-value=8e-14 Score=118.72 Aligned_cols=82 Identities=17% Similarity=0.337 Sum_probs=69.6
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
+..+..|+++.|.|.+.|.|.|.+.|+++|..+... .++... .....|.|.++ +.+|+|.|+|.|+|.+|.+..++
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDV-DKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCC-ChhhCEEEEEEEEcCCCeEEEEE
Confidence 457889999999999999999999999999998765 333322 23347999999 78999999999999999999999
Q ss_pred EEEEEe
Q psy2776 760 RVTVDV 765 (803)
Q Consensus 760 ~l~V~~ 765 (803)
.|+|.+
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 998853
No 35
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.52 E-value=5.5e-14 Score=112.76 Aligned_cols=73 Identities=34% Similarity=0.506 Sum_probs=62.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeC-ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDG-ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|.|.|.+.|.|.|.+.|+|++.++..+ .++.+..++ ....|.|.++ +.+|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGA-TKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCC-CHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998754 455554443 3457999999 799999999999999999999998875
No 36
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.52 E-value=1.5e-13 Score=116.89 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=71.9
Q ss_pred cceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecC-----CeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~-----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+.+.+|+.+.|.|.+.| .|+|.+.|+|+|.+|....+..+.... ..+.|.|.++..+|+|.|+|.|+|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3578899999999999999 888999999999999865544333221 2578999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy2776 590 TSLDLSLQVL 599 (803)
Q Consensus 590 ~s~s~~l~V~ 599 (803)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.52 E-value=7.4e-14 Score=115.82 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=72.7
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|+..|.+..+..|+.+.|.|.+.|.|.|.+.|+++|.++....++.. .+. .|.|.++ ..+|+|.|+|.|.|.+|.
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~-~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAG--DLRITKL-SLSDSGMYQCVAENKHGT 76 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCC--EEEEeeC-CHHHCEEEEEEEECCCCe
Confidence 44566778899999999999999999999999999999977666543 233 6999999 789999999999999999
Q ss_pred eeeeEEEEE
Q psy2776 755 ATHGARVTV 763 (803)
Q Consensus 755 ~~~~~~l~V 763 (803)
..+++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999888875
No 38
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=9e-14 Score=116.45 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=73.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++ +.+|+|.|.|.|.|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v-~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNI-QFEDEGTYECEAENI 75 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCC-CcccCEEEEEEEEEC
Confidence 4566677778889999999999999999999999999887765543322 22347999999 799999999999999
Q ss_pred CcceeeeEEEEE
Q psy2776 752 LGSATHGARVTV 763 (803)
Q Consensus 752 ~G~~~~~~~l~V 763 (803)
+|..+.++.|.|
T Consensus 76 ~G~~~~~~~l~V 87 (88)
T cd04968 76 KGKDTHQGRIYV 87 (88)
T ss_pred CCcEEEEEEEEE
Confidence 999999999887
No 39
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=1e-13 Score=110.48 Aligned_cols=71 Identities=20% Similarity=0.461 Sum_probs=62.3
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
++.|.|.+.|.|.|.+.|+|+|..+..+.++.+..++. |.|.++ +.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v-~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGL-VKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcC-CcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999988777766655444 778899 799999999999999999999998875
No 40
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=1.5e-13 Score=116.01 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=73.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+++.|.|.+.|.|.|.+.|+|+|..+....++.+... +....|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 56789999999999999999999999999999987777776654 34568999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 875
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.51 E-value=1.6e-13 Score=115.80 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=69.4
Q ss_pred ccceeEEecCCeEEEEEEEeecCC-CceEEee-CCeeccC-CCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccC-
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPA-PSIVWFR-NNKPLLS-SPKKREIFD-GENIILELKEADSETDAGDYKVVATNEL- 752 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~-~~~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~- 752 (803)
.|....+..|+++.|.|.+.|.|. |.+.|++ |+..+.. +.++.+... ....+|.|.++ +.+|+|.|+|.|+|.+
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v-~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNA-NIDDAGIYKCVVSNEDE 84 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEecc-ChhhCEEEEEEEEcCCC
Confidence 445567889999999999999995 7999998 7877765 334444332 33578999999 7999999999999997
Q ss_pred cceeeeEEEEE
Q psy2776 753 GSATHGARVTV 763 (803)
Q Consensus 753 G~~~~~~~l~V 763 (803)
|..++++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 99999998876
No 42
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=2.3e-13 Score=113.65 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=73.0
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEee-CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..+.+..+.+|+++.|.|.+.|.|. .+.|++ ++.++..+.++.+..++....|.|.++ ..+|+|.|+|.|+|..|..
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecC-ChHHCEEEEEEEEcCCCcE
Confidence 3456778999999999999999998 899998 578887778888777777789999999 7999999999999999996
Q ss_pred -eeeEEEEE
Q psy2776 756 -THGARVTV 763 (803)
Q Consensus 756 -~~~~~l~V 763 (803)
..++.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 66666654
No 43
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.50 E-value=1.4e-13 Score=117.72 Aligned_cols=90 Identities=26% Similarity=0.371 Sum_probs=74.1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-----CCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----PKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|+|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++ +.+|+|.|+|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 79 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDV-QLTDAGRYDC 79 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcC-CcCcCEEeEE
Confidence 56664 455778899999999999999999999999998776543 2344443445678999999 7999999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy2776 747 VATNELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+|.++.++.|.|
T Consensus 80 ~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 80 EASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEeCCCCcEEEEEEeC
Confidence 99999999999888865
No 44
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.50 E-value=1.4e-13 Score=112.17 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=69.2
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++ +.+|+|.|+|.|.|.+|.....+.+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDV-KESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCC-ChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 7899999999999999999999999988777877777777789999999 7999999999999999999887777664
No 45
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.50 E-value=7.9e-14 Score=108.31 Aligned_cols=66 Identities=24% Similarity=0.458 Sum_probs=57.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|||.+|... .....|.|.++ ..+|+|.|+|.|+|.+|..++++.|+|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v-~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDV-TEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCC-CHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999998532 23448999999 7999999999999999988888888774
No 46
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.49 E-value=1.4e-13 Score=110.25 Aligned_cols=73 Identities=29% Similarity=0.459 Sum_probs=62.9
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCC-eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEE-TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~-~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|+|..|..+ .++.+...+. ..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998753 5566554433 358999999999999999999999999999999875
No 47
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.48 E-value=3.8e-13 Score=113.63 Aligned_cols=87 Identities=22% Similarity=0.447 Sum_probs=67.1
Q ss_pred CeeEeccceeEEe---cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 673 PLFIERFEEKTVK---EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 673 p~~~~~~~~~~v~---~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|.|+..+.++.+. +|++++|.|.+.|.|.|.+.|+|+|.+|.....+.....+. .|.|.++...+|+|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 6677777776554 47899999999999999999999999997554433333333 588888733589999999999
Q ss_pred ccCcce-eeeEEE
Q psy2776 750 NELGSA-THGARV 761 (803)
Q Consensus 750 N~~G~~-~~~~~l 761 (803)
|.+|.. +..+.|
T Consensus 80 N~~G~~~S~~~~l 92 (94)
T cd05848 80 NSIGSILSREALL 92 (94)
T ss_pred cCCCeEEeccEEE
Confidence 999988 445544
No 48
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.48 E-value=2.2e-13 Score=109.73 Aligned_cols=73 Identities=37% Similarity=0.522 Sum_probs=62.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|..+..+ .++.+..+ ....+|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNA-NKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCC-CcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998754 45555444 34457999999 799999999999999999999998875
No 49
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.48 E-value=4e-13 Score=115.96 Aligned_cols=91 Identities=26% Similarity=0.483 Sum_probs=71.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-----CCeEEEeeCceEEEEEe--cCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-----PKKREIFDGENIILELK--EADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-----~~~~~~~~~~~~~L~i~--~v~~~~D~G~Y 744 (803)
||.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|..+... .+.....++....+.|. .+ ..+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRK-GRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCC-CcCcCEEE
Confidence 578888888999999999999999999999999999999998751 22222334444444443 23 47999999
Q ss_pred EEEEEccCcc-eeeeEEEEE
Q psy2776 745 KVVATNELGS-ATHGARVTV 763 (803)
Q Consensus 745 ~C~a~N~~G~-~~~~~~l~V 763 (803)
+|.|.|.+|. .++.+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999999 678888776
No 50
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=1.8e-13 Score=109.97 Aligned_cols=73 Identities=30% Similarity=0.491 Sum_probs=65.2
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..++ .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNV-TKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccC-ChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999999999999999999999888777654333 5999999 799999999999999999999998875
No 51
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.48 E-value=3.7e-13 Score=113.28 Aligned_cols=84 Identities=26% Similarity=0.477 Sum_probs=72.2
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
|..+.+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+... +....|.|.++ +.+|+|.|+|.|.|.+|.+.+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGV-TSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCC-ChhhCEEEEEEEEeCCCceee
Confidence 3457889999999999999999999999999999988777665443 33468999999 789999999999999999998
Q ss_pred eEEEEE
Q psy2776 758 GARVTV 763 (803)
Q Consensus 758 ~~~l~V 763 (803)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 887764
No 52
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=3.5e-13 Score=111.36 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=63.6
Q ss_pred CeEEEEEEEeecCCC--ceEEeeCCeeccCC---CCeEEE-eeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PKKREI-FDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~---~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
++++|.|.+.|.|.| .+.|++||.+|... .++.+. .......|.|.++ +.+|+|.|+|.|.|.+|++++++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNA-QLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccC-ChhhCeEEEEEEecCCCCEEEEEEE
Confidence 478999999999988 58999999998643 243222 2234568999999 7899999999999999999999999
Q ss_pred EEEe
Q psy2776 762 TVDV 765 (803)
Q Consensus 762 ~V~~ 765 (803)
.|.+
T Consensus 80 ~V~~ 83 (85)
T cd05854 80 VVRG 83 (85)
T ss_pred EEEC
Confidence 9975
No 53
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=2.7e-13 Score=109.59 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=62.3
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+++.|.|.+.|.|.|.|+|+|+|.++..... .....++. .|.|.++ +.+|+|.|.|.|+|.+|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v-~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKV-QERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCC-CHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 68899999999999999999999999864432 12223343 6889999 799999999999999999999999987
No 54
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.47 E-value=3.9e-13 Score=108.45 Aligned_cols=74 Identities=28% Similarity=0.504 Sum_probs=67.3
Q ss_pred eeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 525 ~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
.+.|.|.+.|.|.|.+.|+|+|..+..+.+..+......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999999997777777776677889999999999999999999999999999998875
No 55
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=1.9e-13 Score=110.19 Aligned_cols=74 Identities=24% Similarity=0.411 Sum_probs=65.0
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+|+.+.|.|.+.|.|.|.+.|+|+|..+....+..+. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999988765554432 2458999999999999999999999999999998875
No 56
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.47 E-value=7.5e-13 Score=111.68 Aligned_cols=83 Identities=31% Similarity=0.514 Sum_probs=78.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+++.|.|.+.|.|.+.+.|+++|..+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 47889999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 876
No 57
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.46 E-value=2.1e-13 Score=108.80 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=64.9
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+.. +++|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999999887776666533 357999999999999999999999999999998875
No 58
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.46 E-value=5.5e-13 Score=108.06 Aligned_cols=74 Identities=28% Similarity=0.408 Sum_probs=62.1
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|+++|.++...... ..... ...|.|.++ +.+|+|.|.|.|.|.+|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDV-QPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCC-ChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999988754321 12222 236999999 799999999999999999999988887
No 59
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=8.9e-13 Score=111.48 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=66.4
Q ss_pred CeeEeccceeEEecC---CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 673 PLFIERFEEKTVKEK---GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 673 p~~~~~~~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|.|...+....+.+| +++.|.|.+.|.|.|.+.|++||.++...........++ .|.|.++...+|+|.|.|.|+
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence 567777777766665 589999999999999999999999986443222222233 588887634689999999999
Q ss_pred ccCccee-eeEEEE
Q psy2776 750 NELGSAT-HGARVT 762 (803)
Q Consensus 750 N~~G~~~-~~~~l~ 762 (803)
|.+|... +.+.|.
T Consensus 80 N~~G~~~s~~a~l~ 93 (94)
T cd05850 80 NRCGTVVSREANLR 93 (94)
T ss_pred cCcCcEEEEEEEEe
Confidence 9999884 455543
No 60
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.46 E-value=5.5e-13 Score=111.02 Aligned_cols=81 Identities=22% Similarity=0.434 Sum_probs=68.1
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+.. .........|.|.++ ..+|+|.|+|.|.|.+|+...++.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~-~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccC-CcccCEEEEEEEEeCCCEEEEEEE
Confidence 457889999999999999999999999999997665432 122234557999999 789999999999999999999988
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 875
No 61
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.45 E-value=7.2e-13 Score=113.05 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=70.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec------CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID------EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~------~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
...+..|+.+.|.|.+.|+|+|.+.|+|+|.+|..+.+...... ...++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 46678899999999999999999999999999986654322211 224689999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy2776 591 SLDLSLQVL 599 (803)
Q Consensus 591 s~s~~l~V~ 599 (803)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999885
No 62
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.45 E-value=4.5e-13 Score=107.48 Aligned_cols=73 Identities=29% Similarity=0.452 Sum_probs=62.2
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCe-EEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEET-STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~-~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|++..+..+ .++.+.....+ ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988754 45555444322 47999999999999999999999999999999875
No 63
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.45 E-value=3.7e-13 Score=109.73 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=62.2
Q ss_pred CeEEEEEEEeec--CCCceEEeeCCeeccC--CC-CeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVKAS--PAPSIVWFRNNKPLLS--SP-KKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~g~--p~~~v~W~~~~~~l~~--~~-~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
+++.|.|.+.+. +++.|.|+|||.+|.. .. ++.+... .....|.|.++ +.+|+|+|+|.|+|.+++.++++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv-~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSI-QLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecC-CHHHCEEEEEEEEcccCceEEEEEE
Confidence 468999999774 5778999999999963 22 3333211 12347999999 8999999999999999999999999
Q ss_pred EEEee
Q psy2776 762 TVDVE 766 (803)
Q Consensus 762 ~V~~~ 766 (803)
.|++|
T Consensus 80 ~V~~p 84 (85)
T cd05853 80 IVRGP 84 (85)
T ss_pred EEecC
Confidence 99764
No 64
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.45 E-value=1e-12 Score=110.51 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=70.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+++|..+..............+.|.|.++..+|.|.|+|.|.|..|....++.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 45688999999999999999999999999998866544333333456799999999999999999999999999999988
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 75
No 65
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.44 E-value=7.3e-13 Score=107.94 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=60.1
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-------CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+.|.|.|.++|+|||.+|..+.+...... .....|.|.++ +.+|+|.|+|+|+|.+|.+++++.|..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 3789999999999999999999987765433221 23567999999 789999999999999999998887764
No 66
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=5.5e-13 Score=108.39 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|+++|.++...... .........|.|.++ +.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNV-QPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCC-ChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999998765543 112233357999999 789999999999999999999998887
No 67
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=3.8e-13 Score=105.98 Aligned_cols=69 Identities=23% Similarity=0.449 Sum_probs=58.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|||.+|....++ .. ...|.|.++ ..+|+|.|+|.|.|.+|+.+....++|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~---~~--~~~L~I~~v-~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF---KR--GVHLTIYEV-TEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE---cc--CCEEEECcC-CHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999999999765332 12 236999999 7999999999999999998887777764
No 68
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.43 E-value=1.3e-12 Score=110.39 Aligned_cols=81 Identities=28% Similarity=0.423 Sum_probs=73.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 11 ~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 90 (92)
T cd05747 11 RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT 90 (92)
T ss_pred ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence 36789999999999999999999999999999988777777776666789999999999999999999999999888877
Q ss_pred E
Q psy2776 596 L 596 (803)
Q Consensus 596 l 596 (803)
|
T Consensus 91 l 91 (92)
T cd05747 91 L 91 (92)
T ss_pred e
Confidence 6
No 69
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=1.1e-12 Score=110.38 Aligned_cols=88 Identities=24% Similarity=0.416 Sum_probs=65.6
Q ss_pred CCeeEeccceeEEec---CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~---g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.|...+....+.+ |+.+.|.|.+.|.|.|.++|+|++.++......... .+ ..|.|.++...+|+|.|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-~~--g~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-VG--GNLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-EC--CEEEECcCCcCCCCEEEEEEE
Confidence 366777666665554 448999999999999999999999988643332222 23 368898873358999999999
Q ss_pred EccCcce-eeeEEEE
Q psy2776 749 TNELGSA-THGARVT 762 (803)
Q Consensus 749 ~N~~G~~-~~~~~l~ 762 (803)
+|.+|.. ++.+.|.
T Consensus 78 ~N~~G~~~s~~a~l~ 92 (93)
T cd05849 78 SNIYGKVRSREATLS 92 (93)
T ss_pred EeCcceEEEccEEEe
Confidence 9999998 4455553
No 70
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.43 E-value=8.8e-13 Score=105.86 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=59.3
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEE--Ee-e--CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--IF-D--GENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~--~~-~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.|.|.+.|.|.|.++|+|||.+|..+.+... .. . .....|.|.++ ..+|+|.|+|+|+|.+|++++++.+..
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~~~~~~~~f 78 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNP-THLNNGIYTLVAKNEYGEDEKNVSAHF 78 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCC-CcccCEEEEEEEEcCCcccceEEEeec
Confidence 3789999999999999999999987665422 11 1 23468999999 789999999999999999998887753
No 71
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.43 E-value=1.1e-12 Score=111.71 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=70.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+..|+.+.|.|.+.|.|.|.+.|+|+|..+... .++ .....++.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKY--SFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEE--EEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 457889999999999999999999999999988765 333 33345568999999999999999999999999999999
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 98864
No 72
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.42 E-value=1.6e-12 Score=113.09 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCeeEeccceeE-E---ecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEee----CceEEEEEecCCC-CCCc
Q psy2776 672 APLFIERFEEKT-V---KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFD----GENIILELKEADS-ETDA 741 (803)
Q Consensus 672 ~p~~~~~~~~~~-v---~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~----~~~~~L~i~~v~~-~~D~ 741 (803)
+|.|...+.... + ..|+++.|.|.+.|.|.|.+.|+++|..|... .++.+... ....+|.|.++ . .+|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v-~~~~D~ 82 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINV-SAALDY 82 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcC-CccCCC
Confidence 556655554222 2 24679999999999999999999999998743 45543321 12468999998 5 5899
Q ss_pred eeEEEEEEccCcceeeeEEEEEE
Q psy2776 742 GDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 742 G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|+|.|.|.+|.++..+.|.|.
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEec
Confidence 99999999999999999999884
No 73
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.42 E-value=4.4e-13 Score=106.27 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
|.|.|.+.|.|.|.+.|+|+|.++..+.++.+..+ ..|.|.++ ..+|+|.|+|.|.|.+|.++.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDV-GVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcC-ChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 57999999999999999999999987777655432 36999999 78999999999999999999888763
No 74
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.41 E-value=1.3e-12 Score=105.98 Aligned_cols=73 Identities=26% Similarity=0.490 Sum_probs=58.9
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
++|.|.+.|.|.|.+.|+|+|.++..+.. +.+. .....|.|.++ +.+|+|.|.|.|.|.+|....+..++|.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSA-GPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeC-CcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 57999999999999999999999876543 3332 22347999999 79999999999999999986666666654
No 75
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.41 E-value=1.3e-12 Score=105.20 Aligned_cols=73 Identities=29% Similarity=0.450 Sum_probs=62.5
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|+|..+... .++.+.... +...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999998753 455554443 3458999999999999999999999999999998875
No 76
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.41 E-value=1.7e-12 Score=109.62 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=67.5
Q ss_pred ceEEeecceeEEEEEEcCcCC-CeeEEee-CCeeecC-CCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCC-CCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-PEISWMK-NGAEITD-SKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAA-GSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~~v~W~~-~g~~i~~-~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g~~s 591 (803)
...+.+|+++.|.|.+.|.|. |.++|++ +|..+.. +.++.+... ...++|.|.++..+|+|.|+|.|.|.. |...
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 456888999999999999995 7999998 7876655 344444332 235799999999999999999999996 8899
Q ss_pred EEEEEEE
Q psy2776 592 LDLSLQV 598 (803)
Q Consensus 592 ~s~~l~V 598 (803)
.++.|.|
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 9998876
No 77
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=1.8e-12 Score=108.55 Aligned_cols=88 Identities=32% Similarity=0.425 Sum_probs=72.5
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+...... ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI-SMSGAVLKIPNIQFEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE-EEeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence 345556677888899999999999999999999999988765433211 1344689999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy2776 224 ETSCTLLVQ 232 (803)
Q Consensus 224 ~~s~~l~V~ 232 (803)
..++.|.|.
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd04968 80 THQGRIYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 888888773
No 78
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.41 E-value=1.7e-12 Score=108.14 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=68.3
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEec--CC--eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFID--EE--TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~--~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
|+.+.|.|.+.|.|++.+.|+|++..+... .++.+... +. .++|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988654 35544431 12 36899999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|..+|
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98765
No 79
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.41 E-value=7.2e-13 Score=102.92 Aligned_cols=66 Identities=30% Similarity=0.520 Sum_probs=57.6
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.|.|.+.|.|.|.+.|+|+|+.|... ...+.|.|.++..+|+|.|+|.|+|..|..+.++.|.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 235799999999999999999999999988888777663
No 80
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.41 E-value=2.4e-12 Score=110.07 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCC--CCeEEEee----CceEEEEEecCCCC-CCcee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSE-TDAGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~-~D~G~ 743 (803)
||.+. .+....+.+|+++.|.|.+.|.|.| .+.|++++.++... .++.+... +..++|.|.++ .. +|.|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v-~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNT-QESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCc-ccccccee
Confidence 56664 4456778999999999999999999 59999999988754 46665543 23468999999 56 55899
Q ss_pred EEEEEEccCcceeeeEEE
Q psy2776 744 YKVVATNELGSATHGARV 761 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l 761 (803)
|.|.|.|.+|.+.+.+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888776
No 81
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.41 E-value=1.9e-12 Score=107.02 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=65.5
Q ss_pred ceeEEEEEEcCcCCC--eeEEeeCCeeecCC---CcEE-EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 524 SQWKVEVKYFGFPRP--EISWMKNGAEITDS---KACR-IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 524 ~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~---~~~~-~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
+++.|.|.+.|.|.| .+.|+++|..|... .++. +......+.|.|.+++..|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999987 57999999988643 2332 22233457999999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|.++|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 82
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.40 E-value=1.9e-12 Score=110.73 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=67.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEee--CCeeecCC-----CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEITDS-----KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~~~-----~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+| ++..+... .++.+........|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 36788999999999999999999999999 44444321 244443333457899999999999999999999999
Q ss_pred CeEEEEEEEE
Q psy2776 589 STSLDLSLQV 598 (803)
Q Consensus 589 ~~s~s~~l~V 598 (803)
....++.|.|
T Consensus 89 ~~~~~~~l~~ 98 (98)
T cd05870 89 GHQKSMYLDI 98 (98)
T ss_pred cceeEEEEeC
Confidence 9999988865
No 83
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=8.1e-13 Score=105.35 Aligned_cols=70 Identities=33% Similarity=0.524 Sum_probs=58.5
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|++.++..+. .... ....+|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNV-LESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEccc-CHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998775542 2222 23457999999 789999999999999999999988887
No 84
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.40 E-value=1.4e-12 Score=108.30 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=62.7
Q ss_pred CeEEEEEEEeecCCC--ceEEeeCCeeccCCC---CeE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVKASPAP--SIVWFRNNKPLLSSP---KKR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
+.+.|.|.+.|.|.| .+.|+++|.+|.... ++. .........|.|.++ +.+|+|.|+|.|.|.+|..++++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNA-QLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccC-CHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468999999999988 579999999986432 222 222234567999999 7999999999999999999999999
Q ss_pred EEEe
Q psy2776 762 TVDV 765 (803)
Q Consensus 762 ~V~~ 765 (803)
.|.+
T Consensus 80 ~V~~ 83 (85)
T cd04970 80 IVRG 83 (85)
T ss_pred EEEC
Confidence 9975
No 85
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.40 E-value=1.7e-12 Score=105.77 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=67.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+++.|.|.+.|.|.|.+.|++++..+....++.+....+.+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6889999999999999999999999888777777666666789999999999999999999999999877766654
No 86
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=1.4e-12 Score=105.44 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=63.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|+.+.|.|.+.|.|.|+++|+|+|+++.......... .++..|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~-~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK-VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE-ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 6789999999999999999999999986542211111 133579999999999999999999999999999999873
No 87
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=1.2e-12 Score=104.22 Aligned_cols=70 Identities=34% Similarity=0.553 Sum_probs=59.7
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|+|.++..+.++. . ...+|.|.++ +.+|+|.|+|.|.|.+|..+.++.++|-
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~--~~~~L~I~~v-~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--K--SGHSLTIKDV-TEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--c--CCCEEEECcC-CHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4699999999999999999999997764332 2 2347999999 7999999999999999999888888774
No 88
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.40 E-value=1.7e-12 Score=107.73 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=69.6
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+. +..|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 3577899999999999999999999999999998776555432 357999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 875
No 89
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.39 E-value=1.6e-12 Score=109.21 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=65.6
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeec--------cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
|+.+.|.|.+.|.|.|.+.|+++|..+ ....++.+..+ ..|.|.++ +.+|+|.|.|.|.|.+|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNV-QRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeC-ChhhCEEEEEEEEcCCCceEEE
Confidence 789999999999999999999987643 12334443322 36999999 7999999999999999999999
Q ss_pred EEEEEEeeccCCC
Q psy2776 759 ARVTVDVEKVGRP 771 (803)
Q Consensus 759 ~~l~V~~~~~~pp 771 (803)
+.|.|......+|
T Consensus 77 ~~l~V~~~~~~~~ 89 (90)
T cd05726 77 AYLEVTDVIADRP 89 (90)
T ss_pred EEEEEeecccCCC
Confidence 9999986555543
No 90
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.39 E-value=3.4e-12 Score=106.56 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=69.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+...+..+.|.|.++..+|+|.|+|.|+|..|.. ..++
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 577899999999999999998 899998 5777777677776665566799999999999999999999999985 6666
Q ss_pred EEEE
Q psy2776 595 SLQV 598 (803)
Q Consensus 595 ~l~V 598 (803)
.|.|
T Consensus 88 ~l~~ 91 (92)
T cd05866 88 VLEI 91 (92)
T ss_pred EEEE
Confidence 6654
No 91
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.39 E-value=1.7e-12 Score=103.52 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=61.7
Q ss_pred eeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 525 QWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 525 ~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
.+.|.|.+.|.|.|.++|+|+|..+..+.++.+.. ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~---~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK---EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe---cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999999999999999999887766665543 245888999999999999999999999999998875
No 92
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.39 E-value=2.1e-12 Score=101.83 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=57.4
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
|+.+.|.|.+.|.|.|.|.|+|++.++....++.. ....|.|.++ .|+|.|+|.|.|.+|...+++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~---~d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI---YESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc---ccCeeEEEEEEeCCCEEEEEEEEC
Confidence 68899999999999999999999998866544321 2347999987 479999999999999998888763
No 93
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.38 E-value=2.5e-12 Score=107.62 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=65.6
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~ 758 (803)
.++.+.+|++++|.|.+.|. .|.+.|++++..+... ++.+.. ...+|.|.++ +.+|+|.|.|.|.|.+|.. +..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~--~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSN--DNRTLTFNNV-TRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeC--CCCEEEECcC-ChhhCEEEEEEEEcCCCCEEeee
Confidence 35688999999999999999 9999999999987543 443333 3347999999 7999999999999999986 567
Q ss_pred EEEEE
Q psy2776 759 ARVTV 763 (803)
Q Consensus 759 ~~l~V 763 (803)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 77776
No 94
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.38 E-value=2.5e-12 Score=104.18 Aligned_cols=74 Identities=24% Similarity=0.445 Sum_probs=63.0
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.++|+|+|..+...... +... ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 688999999999999999999999988764321 2222 2457999999999999999999999999999999887
No 95
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.38 E-value=2e-12 Score=105.51 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=65.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
....+.+|+.+.|.|.+.|. .+.+.|+|+|.+|..+.++.+. +. .|.|.++ +.+|+|.|+|.|.|..|.+...+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~-~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDA-VPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCC-ChhhCEEEEEEEeCCCCcccEEE
Confidence 34678899999999999986 5689999999999877766543 33 7999999 78999999999999999988877
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 6654
No 96
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.38 E-value=3.2e-12 Score=106.42 Aligned_cols=81 Identities=25% Similarity=0.401 Sum_probs=68.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE-EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR-IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~-~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+.. +........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 557889999999999999999999999999987654331 2222345689999999999999999999999999999988
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 97
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.38 E-value=1.7e-12 Score=105.49 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=60.8
Q ss_pred eccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..+.++.+.+|+++.|.|.+.|.|.| .|.|+|+|.++... .......|.|..+ .|.|.|.|.|+|.+|..
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGL---NETSKFSCEAHNAKGVT 73 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEccc---cCCeEEEEEEEeccCcE
Confidence 45567889999999999999999999 79999999998641 1123347999876 57899999999999976
Q ss_pred e-eeEEE
Q psy2776 756 T-HGARV 761 (803)
Q Consensus 756 ~-~~~~l 761 (803)
. +.++|
T Consensus 74 ~s~~a~~ 80 (81)
T cd05749 74 TSRTGTV 80 (81)
T ss_pred EeeeEEe
Confidence 4 45544
No 98
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.37 E-value=3.7e-12 Score=108.83 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=68.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-----CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-----KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-----~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
...+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 567889999999999999999999999998766543 223333334457999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2776 592 LDLSLQV 598 (803)
Q Consensus 592 ~s~~l~V 598 (803)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 9988865
No 99
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.37 E-value=4.2e-12 Score=106.84 Aligned_cols=82 Identities=22% Similarity=0.475 Sum_probs=71.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.... ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 577899999999999999999999999999988776666554433 2358999999999999999999999999999988
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 875
No 100
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=2.2e-12 Score=103.58 Aligned_cols=73 Identities=30% Similarity=0.401 Sum_probs=64.5
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.+.|+|++..+....++.+.. ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999999987766665432 347999999999999999999999999999998875
No 101
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.37 E-value=2.8e-12 Score=104.55 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred ceeEEEEEEcC--cCCCeeEEeeCCeeecC--C-CcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 524 SQWKVEVKYFG--FPRPEISWMKNGAEITD--S-KACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 524 ~~v~l~C~~~g--~p~~~v~W~~~g~~i~~--~-~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
+++.|.|.+.+ .+++.+.|+|||+.|.. . .++..... ...+.|.|.+++.+|+|.|+|.|+|..+..+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46889999977 45789999999999962 2 23333211 2456899999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
No 102
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.36 E-value=2.7e-12 Score=104.27 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=64.6
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|+.+.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 688999999999999999999999988765432 1222345789999999999999999999999999999999873
No 103
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=3.4e-12 Score=102.98 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=60.5
Q ss_pred CCeEEEEEEEeecCCCceEEee-CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+... .+|.|..+ ..+|+|.|+|.|.|.+|.++..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILIT-TVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEEC-ChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 6776665555444333 25899999 799999999999999999988887765
No 104
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.36 E-value=3.3e-12 Score=103.64 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=62.6
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.|.+.|.|.|.+.|+|++..+..+.+..+...+....|.|.++ ..+|.|.|+|.|.|.+|.+...+.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNV-RYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcC-CcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 4699999999999999999999987665433333344457999999 7899999999999999999999999884
No 105
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.36 E-value=2.5e-12 Score=103.41 Aligned_cols=71 Identities=27% Similarity=0.538 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCceEEeeCCeecc--CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
++|.|.+.|.|.|.+.|+|++.++. .+.++.... ...|.|.++ +.+|+|.|.|.|.|.+|.. +..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~---~g~L~i~~~-~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR---SGALQIENS-EESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC---CcEEEECCC-ChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999999987 344544322 235999999 7999999999999999996 788888873
No 106
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.36 E-value=3.4e-12 Score=102.47 Aligned_cols=71 Identities=20% Similarity=0.383 Sum_probs=59.4
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEE--Ee---cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRI--FI---DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~--~~---~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
-|.|.+.|+|.|+++|+|+|++|..+.+... .. ....++|.|.++..+|+|.|+|+|+|..|.++.++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999999987755422 11 12357899999999999999999999999998888765
No 107
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.36 E-value=6.1e-12 Score=105.30 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=68.9
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTL 229 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l 229 (803)
+.++.+.+|++++|.|.+.|. .|.+.|+|++..+...++.+......|.|.+++.+|+|.|+|.|.|..|.... .+.|
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 456788999999999999999 99999999999887666666666678999999999999999999999998654 5667
Q ss_pred EE
Q psy2776 230 LV 231 (803)
Q Consensus 230 ~V 231 (803)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 66
No 108
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.35 E-value=2.8e-12 Score=103.69 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccC---CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLS---SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~---~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|..... ..++.+...+ ..|.|.++ +.+|+|.|.|.|.|.+|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~L~I~~~-~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED--DVFFIVDV-KIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC--CEEEEeeC-CcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999999999999999999864322 2233332223 37999999 789999999999999999999999887
No 109
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.35 E-value=2.5e-12 Score=107.91 Aligned_cols=76 Identities=28% Similarity=0.445 Sum_probs=59.4
Q ss_pred CCeEEEEEEEeecCCCceEEeeCC----eeccCCC-Ce-EEEe-------eCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNN----KPLLSSP-KK-REIF-------DGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~----~~l~~~~-~~-~~~~-------~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
|+.+.|.|.+.|.|.|.+.|+|++ ..+.... .. .... .+....|.|.++ +.+|+|.|+|.|+|.+|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNV-SFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecc-ccccCcEEEEEeecccC
Confidence 678999999999999999999953 3332221 11 1111 133457999999 79999999999999999
Q ss_pred ceeeeEEEEE
Q psy2776 754 SATHGARVTV 763 (803)
Q Consensus 754 ~~~~~~~l~V 763 (803)
...+++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999999987
No 110
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.35 E-value=1.1e-11 Score=104.26 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=67.0
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEee-CCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR-NNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..+....+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+... ....+|.|.++ +.+|+|.|+|.|.|.+|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNA-NIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecC-CcccCEEEEEEEEcCCCC
Confidence 3455678999999999999999975 999998 6777766556554443 35678999999 799999999999999765
Q ss_pred -eeeeEEEEE
Q psy2776 755 -ATHGARVTV 763 (803)
Q Consensus 755 -~~~~~~l~V 763 (803)
..+++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 466666653
No 111
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.35 E-value=4.6e-12 Score=106.40 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=60.3
Q ss_pred CCeEEEEEEEeecCCCceEEeeC----CeeccCCCCe--EEEe-------eCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRN----NKPLLSSPKK--REIF-------DGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~----~~~l~~~~~~--~~~~-------~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
|+.+.|.|.+.|.|.|.+.|+|+ |..+..+... .+.. +.....|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNV-TFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccC-CHHHCEEEEEEEEeCCC
Confidence 68999999999999999999983 5555433221 1111 122368999999 79999999999999999
Q ss_pred ceeeeEEEEE
Q psy2776 754 SATHGARVTV 763 (803)
Q Consensus 754 ~~~~~~~l~V 763 (803)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999999987
No 112
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.34 E-value=3.7e-12 Score=101.11 Aligned_cols=69 Identities=23% Similarity=0.501 Sum_probs=57.8
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
++|.|.+.|.|.|.+.|+|++..+.. .++... . ...|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~-~--~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL-D--DKSLKIRNV-TAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe-e--CCEEEECcC-ChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999877643 344444 2 236999999 789999999999999999999888875
No 113
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.34 E-value=4.6e-12 Score=104.72 Aligned_cols=78 Identities=26% Similarity=0.450 Sum_probs=64.6
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.+..|+++.|.|.+.|.|.|.+.|++++..+....... .......|.|.++ +.+|+|.|+|.|.|..|..++.+.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNL-KPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccC-ChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45679999999999999999999999999876544322 2233468999999 79999999999999999988877765
Q ss_pred E
Q psy2776 763 V 763 (803)
Q Consensus 763 V 763 (803)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
No 114
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.33 E-value=3.7e-12 Score=101.92 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=58.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|++++.++..+ +.. .......|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNV-SEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCC-CHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999999887543 222 2233457999999 789999999999999999999998887
No 115
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.33 E-value=7.2e-12 Score=104.06 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=64.8
Q ss_pred ceeEEEEEEcCcCCC--eeEEeeCCeeecCCC---cE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 524 SQWKVEVKYFGFPRP--EISWMKNGAEITDSK---AC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 524 ~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~---~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
+.+.|.|.+.|.|.| .+.|+++|..+.... .+ +.......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999987 678999999886432 22 122223457899999999999999999999999999999999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98865
No 116
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.33 E-value=1.2e-11 Score=105.63 Aligned_cols=88 Identities=27% Similarity=0.455 Sum_probs=69.8
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce------eEEEe--cCeeEEEEecCCCCcceEEEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR------NITYE--NNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~--~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+... ++... .....|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 456665555566666899999999999999999999988765421 22222 2346899999999999999999
Q ss_pred EEcCCcCeeeEEEEEE
Q psy2776 216 ATNEAGTAETSCTLLV 231 (803)
Q Consensus 216 a~n~~g~~~~s~~l~V 231 (803)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988888765
No 117
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.33 E-value=6.9e-12 Score=102.23 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=59.5
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-------CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-------EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-------~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
.|.|.+.|.|.|.++|+|+|..|..+........ ...+.|.|.++..+|+|.|+|.|+|..|.++.++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789999999999999999999987654433211 2356899999999999999999999999999888775
No 118
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.33 E-value=4.7e-12 Score=100.90 Aligned_cols=71 Identities=32% Similarity=0.627 Sum_probs=60.8
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
+.|.|.+.|.|.|.+.|+|++..+...+........+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999999999999999887765444444456789999999999999999999999999888888763
No 119
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.33 E-value=8.3e-12 Score=104.20 Aligned_cols=81 Identities=28% Similarity=0.437 Sum_probs=65.6
Q ss_pred cceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-
Q psy2776 679 FEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA- 755 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~- 755 (803)
+....+.+|+++.|.|.+ .|.|.|.+.|+|+|..+... .++.+.. ...|.|.++ +.+|+|.|+|.|.|.+|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEA-RKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeEC-CcccCEEEEEEEEeccCcee
Confidence 345678899999999998 79999999999999998763 3444332 236999999 7899999999999999987
Q ss_pred eeeEEEEE
Q psy2776 756 THGARVTV 763 (803)
Q Consensus 756 ~~~~~l~V 763 (803)
+..+.|.|
T Consensus 79 s~~~~l~V 86 (86)
T cd05724 79 SAAARLSV 86 (86)
T ss_pred eeeEEEEC
Confidence 55665543
No 120
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.33 E-value=1.7e-11 Score=102.77 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=72.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCC--CCeEEEee----CceEEEEEecCCCCCC-cee
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSS--PKKREIFD----GENIILELKEADSETD-AGD 743 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~~D-~G~ 743 (803)
||.| .......+.+|+++.|.|.+.+.|+| .+.|.+++..|..+ .++.+... +..++|.|.++ ...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~-~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNI-MEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCC-ccccCCcE
Confidence 5666 56667889999999999999889888 57888888887654 57777654 47889999999 4555 899
Q ss_pred EEEEEEccCcceeeeEEE
Q psy2776 744 YKVVATNELGSATHGARV 761 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l 761 (803)
|.|.|.|.+|++...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999988776
No 121
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.33 E-value=3.6e-12 Score=101.02 Aligned_cols=68 Identities=31% Similarity=0.461 Sum_probs=59.7
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.. .+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999888766655432 4689999999999999999999999999988876
No 122
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.32 E-value=4.9e-12 Score=99.64 Aligned_cols=68 Identities=34% Similarity=0.602 Sum_probs=57.3
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.+.|+|+|.++....+. . .+..|.|.++..+|+|.|+|.|.|..|....+.++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468999999999999999999999765322 1 2457999999999999999999999998777766655
No 123
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.32 E-value=6.1e-12 Score=100.09 Aligned_cols=70 Identities=29% Similarity=0.526 Sum_probs=59.8
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.|.|.+.|.|+|.+.|+|+|..+..+.+.. .....|.|.++..+|+|.|+|.|.|..|....++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999998764322 235789999999999999999999999998888777663
No 124
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.32 E-value=1.2e-11 Score=105.18 Aligned_cols=86 Identities=27% Similarity=0.458 Sum_probs=65.9
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC--eEEEeeCceEEEEEecCC----CCCCceeEEEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK--KREIFDGENIILELKEAD----SETDAGDYKVVA 748 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~--~~~~~~~~~~~L~i~~v~----~~~D~G~Y~C~a 748 (803)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..... +.+..++ .|.|.++. +.+|+|.|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence 44556677788999999999999999999999999999876543 3333333 35555541 368999999999
Q ss_pred Ecc-Ccce-eeeEEEEE
Q psy2776 749 TNE-LGSA-THGARVTV 763 (803)
Q Consensus 749 ~N~-~G~~-~~~~~l~V 763 (803)
.|. +|.. ++.+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 9987 66776654
No 125
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.32 E-value=1.5e-11 Score=106.96 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=67.1
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEec----CCeEEEEEeeec-cCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFID----EETSTIAIYSVV-RADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~----~~~~~L~i~~v~-~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
.|..+.|.|.+.|.|.+.+.|+|+|..|... .++.+... ...+.|.|.++. .+|.|.|+|.|.|..|....++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 4679999999999999999999999988643 34433211 124689999997 59999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9998765
No 126
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=8.9e-12 Score=100.75 Aligned_cols=73 Identities=33% Similarity=0.498 Sum_probs=58.4
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeec-CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~-~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+.|.|.+.|.|.|.++|+|+|.... .....++.....+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 222222222334458999999999999999999999999999999987
No 127
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.30 E-value=1.2e-11 Score=100.90 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=66.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|+.+.|.|.+.+. .+.+.|+|+|.+|..+.++.+. +..|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 4678899999999999986 5689999999999876665543 2479999999999999999999999998888877
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 65
No 128
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.29 E-value=1.3e-11 Score=100.06 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=64.3
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+.|.|.+.|.|.|.+.|+|++..+..+.+.++....++..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 468999999999999999999988766444444444567899999999999999999999999999999998853
No 129
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.29 E-value=1.3e-11 Score=100.17 Aligned_cols=71 Identities=24% Similarity=0.490 Sum_probs=57.7
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCC-cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE--EEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSK-ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL--DLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~-~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~--s~~l~V 598 (803)
++|.|.+.|.|.|.++|+|+|..+..+. ++.+ ......|.|.++..+|+|.|+|.|.|..|.... .+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999987653 3333 233468999999999999999999999998754 555555
No 130
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=9.7e-12 Score=102.44 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCe---e--ccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNK---P--LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~---~--l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
|+++.|.|.+.|.|.|.+.|+|++. . +................|.|.++ +.+|+|.|.|.|.|.+|....++.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccC-CcccCEEEEEEEecCCceEEEEEEE
Confidence 7899999999999999999999732 1 11111111111123457999999 7999999999999999999999988
Q ss_pred EE
Q psy2776 762 TV 763 (803)
Q Consensus 762 ~V 763 (803)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 75
No 131
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.29 E-value=1.1e-11 Score=100.38 Aligned_cols=70 Identities=29% Similarity=0.429 Sum_probs=58.7
Q ss_pred EEEEEEEee-cCCCceEEeeCCeeccCCCCeE---EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 690 IRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKR---EIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 690 v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~---~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+.|.|.+.| .|.|.+.|+|+|.++..+.+.. +........|.|.++ +.+|+|.|+|.|.|.+|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKA-KLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccC-CcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 8999999999999997665433 333345678999999 799999999999999999887764
No 132
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.28 E-value=1.9e-11 Score=96.34 Aligned_cols=68 Identities=19% Similarity=0.411 Sum_probs=56.9
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
|+++.|.|.+.|.|.|.+.|+|+|..+....+... ....|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998866543321 34579999974 8999999999999998888776
No 133
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.28 E-value=9.1e-12 Score=101.00 Aligned_cols=67 Identities=25% Similarity=0.455 Sum_probs=51.6
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCC----CCceeEEEEEEccCcceee
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE----TDAGDYKVVATNELGSATH 757 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~----~D~G~Y~C~a~N~~G~~~~ 757 (803)
+.|.|.+.|.|.|.|+|+|+|.++.......+........|.|..+ .. +|+|.|.|.|+|.+|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNM-NGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEecc-CCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999999999999986543323333333456888876 33 6899999999999998743
No 134
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.28 E-value=9.3e-12 Score=104.72 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=65.1
Q ss_pred ceeEEecCCeEEEEEEEee-----cCCCceEEeeCCeeccCC--CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 680 EEKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
....+.+|+++.|.|.+.| .|.+.+.|||++.++... ...++...+ ..|.|.++ ..+|+|.|.|.|+|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~-~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPA-ALEDSGLYTCVVRNST 83 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccC-CcccCeEEEEEEcCCC
Confidence 3567889999999999999 689999999998765321 122233333 47999999 7999999999999999
Q ss_pred cceeeeEEEEE
Q psy2776 753 GSATHGARVTV 763 (803)
Q Consensus 753 G~~~~~~~l~V 763 (803)
|.++.++.|.|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 99999888875
No 135
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.28 E-value=2e-11 Score=102.46 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=60.3
Q ss_pred cceeEEEEEEcCcCCCeeEEeeC----CeeecCCCc--EEEE-------ecCCeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKN----GAEITDSKA--CRIF-------IDEETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~----g~~i~~~~~--~~~~-------~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.+.|.|.+.|.|.|.+.|+|+ |..+..... ..+. .....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 444443222 1111 1122468999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2776 590 TSLDLSLQV 598 (803)
Q Consensus 590 ~s~s~~l~V 598 (803)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999987
No 136
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.28 E-value=1.7e-11 Score=101.27 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=65.8
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+..|+.+.|.|.+.|.|.|.+.|+|++..+....... .......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 345679999999999999999999999998876543222 223457899999999999999999999999988888876
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 5
No 137
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.28 E-value=1.6e-11 Score=96.80 Aligned_cols=70 Identities=30% Similarity=0.493 Sum_probs=56.4
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.+.|.|.|.+.|+|+|.++..+... ...++ .+|.|.++ +.+|+|.|+|.|+|..........+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v-~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDV-TEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcC-CHHHCEEEEEEEEccccceEeeEEEEE
Confidence 469999999999999999999998765322 22233 37999999 799999999999999877776666654
No 138
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.27 E-value=1.8e-11 Score=98.94 Aligned_cols=66 Identities=27% Similarity=0.424 Sum_probs=50.1
Q ss_pred EEEEEEEeecCCCceEEeeCCeecc--CCCCeEEEeeCceEEEEEecCC---CCCCceeEEEEEEccCcceee
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEAD---SETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~v~---~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
+.|.|.+.|.|.|.++|+|+|.++. .+.++.+..+ ..+|.|..+. ..+|+|.|.|.|+|.+|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRR--SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCC--CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4699999999999999999999764 3445544333 3468887651 125799999999999998743
No 139
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=2.6e-11 Score=97.80 Aligned_cols=73 Identities=27% Similarity=0.478 Sum_probs=61.0
Q ss_pred cceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+..+.. ..+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 666666554443322 357999999999999999999999999998888865
No 140
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.27 E-value=1.6e-11 Score=99.25 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=49.6
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCC----CCceeEEEEEEccCcceee
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSE----TDAGDYKVVATNELGSATH 757 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~----~D~G~Y~C~a~N~~G~~~~ 757 (803)
+.|.|.+.|.|.|.+.|+|+|.++.......+.......+|.|..+ .. .|.|.|+|.|+|.+|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIM-NGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEecc-ccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4799999999999999999999875433322233233345777666 32 3789999999999999754
No 141
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.27 E-value=1.7e-11 Score=98.01 Aligned_cols=70 Identities=33% Similarity=0.666 Sum_probs=60.6
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
+.|.|.+.|.|.|.+.|+|++..+.............|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999998776554444455678999999999999999999999999888888876
No 142
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.26 E-value=1.8e-11 Score=97.08 Aligned_cols=69 Identities=32% Similarity=0.593 Sum_probs=59.1
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
++|.|.+.|.|.|.+.|+|++..+...+.... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999887765554443 3457999999999999999999999999988888765
No 143
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.26 E-value=2.5e-11 Score=101.99 Aligned_cols=76 Identities=26% Similarity=0.370 Sum_probs=63.0
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeec--------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEIT--------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~--------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
|+.+.|.|.+.|.|.|.+.|+|+|..+. ...++.+. ....|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS---QTGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC---CCCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999886531 12333332 235799999999999999999999999999999
Q ss_pred EEEEeee
Q psy2776 595 SLQVLGY 601 (803)
Q Consensus 595 ~l~V~~~ 601 (803)
.|.|.+.
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9999864
No 144
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.25 E-value=5e-11 Score=100.31 Aligned_cols=81 Identities=25% Similarity=0.465 Sum_probs=64.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCC-CeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAG-STSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-~~s~s 593 (803)
...+..|+.+.|.|.+.|.|+ .+.|++ ++..+....++.+... ...++|+|.++..+|+|.|+|.|.|..| ....+
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 467889999999999999975 999998 6776766555444332 3457999999999999999999999965 46677
Q ss_pred EEEEE
Q psy2776 594 LSLQV 598 (803)
Q Consensus 594 ~~l~V 598 (803)
+.|.|
T Consensus 88 v~l~~ 92 (92)
T cd04977 88 VNLKI 92 (92)
T ss_pred EEEEC
Confidence 77654
No 145
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.25 E-value=5e-11 Score=102.75 Aligned_cols=88 Identities=30% Similarity=0.479 Sum_probs=67.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-------eEEEecC-eeEEEE--ecCCCCcceEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-------NITYENN-VARFTV--VNCSESSEGRYT 213 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~~~-~~~L~i--~~v~~~d~G~Y~ 213 (803)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .....++ ...+.+ .++..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 477888888899999999999999999999999999999887641 1112222 222333 234799999999
Q ss_pred EEEEcCCcC-eeeEEEEEE
Q psy2776 214 CKATNEAGT-AETSCTLLV 231 (803)
Q Consensus 214 C~a~n~~g~-~~~s~~l~V 231 (803)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555677765
No 146
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.25 E-value=2.6e-11 Score=101.69 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=59.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCC----eeecCCCc-E-EEEe-------cCCeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNG----AEITDSKA-C-RIFI-------DEETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g----~~i~~~~~-~-~~~~-------~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.+.|.|.+.|.|.|.++|+|++ ..+..... . .... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 33322211 1 1111 122358999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2776 590 TSLDLSLQV 598 (803)
Q Consensus 590 ~s~s~~l~V 598 (803)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999987
No 147
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.24 E-value=3.3e-11 Score=96.93 Aligned_cols=72 Identities=28% Similarity=0.365 Sum_probs=58.1
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQV 598 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l~V 598 (803)
++|.|.+.|.|.|.+.|+|++..+......++... .++.|.|.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL-RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc-CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998874322222222 34579999999999999999999999984 67777776
No 148
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.23 E-value=8e-11 Score=99.12 Aligned_cols=82 Identities=27% Similarity=0.537 Sum_probs=61.5
Q ss_pred CeeEeccceeEEec---CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 673 PLFIERFEEKTVKE---KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 673 p~~~~~~~~~~v~~---g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|.|+..+..+.+.+ |+++.|.|.+.|.|.|.+.|++++.++............. .|.|.++...+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 56777777665544 4689999999999999999999999885432222222222 588888733489999999999
Q ss_pred ccCccee
Q psy2776 750 NELGSAT 756 (803)
Q Consensus 750 N~~G~~~ 756 (803)
|.+|...
T Consensus 80 N~~G~~~ 86 (91)
T cd04967 80 NIVGTVL 86 (91)
T ss_pred cCCCEEE
Confidence 9999864
No 149
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.23 E-value=6.4e-11 Score=99.57 Aligned_cols=83 Identities=25% Similarity=0.405 Sum_probs=62.5
Q ss_pred CeeeccCcCeeeec---CCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCC-CCcceEEEEEEEc
Q psy2776 145 PVIQEPLKDSVAGF---QSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCS-ESSEGRYTCKATN 218 (803)
Q Consensus 145 p~i~~~~~~~~v~~---G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n 218 (803)
|.|...|.+..+.+ |+.+.|.|.+.|.|.|.++|+|++..+.. .+.... ...|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--GGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--CCEEEECcCCcCCCCEEEEEEEEe
Confidence 45555566655444 44899999999999999999999987752 233333 3579999985 6999999999999
Q ss_pred CCcCeee-EEEE
Q psy2776 219 EAGTAET-SCTL 229 (803)
Q Consensus 219 ~~g~~~~-s~~l 229 (803)
..|.... .+.|
T Consensus 80 ~~G~~~s~~a~l 91 (93)
T cd05849 80 IYGKVRSREATL 91 (93)
T ss_pred CcceEEEccEEE
Confidence 9998654 3444
No 150
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.23 E-value=7.6e-11 Score=100.24 Aligned_cols=81 Identities=25% Similarity=0.244 Sum_probs=63.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeee-----ccCcCeEEEEEEEcC-CCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSV-----VRADTSTYTVTATNA-AGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v-----~~~dsG~Y~C~a~n~-~g~~ 590 (803)
...+.+|+++.|.|.+.|.|.|.+.|+|+|..+....+.+..... ++.|.|.++ ..+|.|.|+|.|.|. .|..
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP-NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc-CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 566788999999999999999999999999998765432222222 345777776 589999999999999 9986
Q ss_pred -EEEEEEEE
Q psy2776 591 -SLDLSLQV 598 (803)
Q Consensus 591 -s~s~~l~V 598 (803)
+..+.|.|
T Consensus 87 ~s~~~~l~v 95 (95)
T cd05722 87 VSRTARLTV 95 (95)
T ss_pred EEeeeEEeC
Confidence 66777664
No 151
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.23 E-value=4e-11 Score=97.07 Aligned_cols=70 Identities=21% Similarity=0.392 Sum_probs=58.6
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEE---EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACR---IFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~---~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
+.|.|.+.| .|.|.+.|+|+|..+....+.. +......+.|.|.++..+|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999999 9999999999999987654432 333345689999999999999999999999999887765
No 152
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.22 E-value=9.1e-11 Score=100.29 Aligned_cols=80 Identities=26% Similarity=0.317 Sum_probs=66.1
Q ss_pred ceEEeecceeEEEEEEcCcCCC-eeEEeeCCeeecCC--CcEEEEec----CCeEEEEEeeeccC-cCeEEEEEEEcCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDS--KACRIFID----EETSTIAIYSVVRA-DTSTYTVTATNAAG 588 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~--~~~~~~~~----~~~~~L~i~~v~~~-dsG~Y~C~a~n~~g 588 (803)
...+.+|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... ...+.|.|.++..+ |.|.|+|.|.|..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 4668899999999999999999 69999999988754 45555432 12368999999994 49999999999999
Q ss_pred CeEEEEEE
Q psy2776 589 STSLDLSL 596 (803)
Q Consensus 589 ~~s~s~~l 596 (803)
.+...+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 98888776
No 153
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.22 E-value=7.1e-11 Score=98.54 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=64.5
Q ss_pred ceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s 593 (803)
...+.+|+++.|.|.+ .|.|.|.+.|+|+|..+... .+..+.. .+.|.|.++..+|+|.|+|.|.|..|.. +..
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 5778899999999998 79999999999999988764 3333322 4589999999999999999999999985 455
Q ss_pred EEEEE
Q psy2776 594 LSLQV 598 (803)
Q Consensus 594 ~~l~V 598 (803)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 55543
No 154
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.21 E-value=9.3e-11 Score=99.05 Aligned_cols=81 Identities=27% Similarity=0.503 Sum_probs=61.6
Q ss_pred CeeeccCcCeeee---cCCcEEEEEEECccCCCeeEEEEcCeeccce-eEEEecCeeEEEEecCC-CCcceEEEEEEEcC
Q psy2776 145 PVIQEPLKDSVAG---FQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NITYENNVARFTVVNCS-ESSEGRYTCKATNE 219 (803)
Q Consensus 145 p~i~~~~~~~~v~---~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~ 219 (803)
|.|...|.++.+. +|+.+.|.|.+.|.|.|++.|+|++..+... ...+......|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 4555556665443 4789999999999999999999999988632 22222233578999985 69999999999999
Q ss_pred CcCeee
Q psy2776 220 AGTAET 225 (803)
Q Consensus 220 ~g~~~~ 225 (803)
.|...+
T Consensus 82 ~G~~~S 87 (94)
T cd05848 82 IGSILS 87 (94)
T ss_pred CCeEEe
Confidence 997643
No 155
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.21 E-value=2.1e-10 Score=105.16 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=82.3
Q ss_pred EEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEe
Q psy2776 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644 (803)
Q Consensus 565 ~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 644 (803)
.|.|.+++.+|+|.|.|.+.+..|.....+.|.|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-------------------------------------------- 37 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE-------------------------------------------- 37 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec--------------------------------------------
Confidence 689999999999999999999988889999998866
Q ss_pred cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccC-----CC
Q psy2776 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLS-----SP 717 (803)
Q Consensus 645 n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~-----~~ 717 (803)
+|.+...+......+|+.+.|.|.+.|. |. +.|.|+++|..... ..
T Consensus 38 ---------------------------~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~ 90 (139)
T cd05771 38 ---------------------------PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSN 90 (139)
T ss_pred ---------------------------CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCC
Confidence 4444444444444578999999999996 54 48999999864211 11
Q ss_pred ----CeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 718 ----KKREIFDGE---NIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 718 ----~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
......++. .+.|.|..- ..++.+.|+|.+.+..-
T Consensus 91 ~~~~~~~~~~dgt~~~~s~L~v~~~-~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 91 VSFSSHRQHQDGTYSLSSHLTLEPG-TEDAGATYTCRVSHVSL 132 (139)
T ss_pred eEecceEeCCCCCEEEEEEEEecCC-ccCCCCEEEEEEEcCCC
Confidence 111122232 345667654 33456789999987543
No 156
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.21 E-value=3.5e-11 Score=101.25 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=65.6
Q ss_pred ceEEeecceeEEEEEEcC-----cCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFG-----FPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-----~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
...+.+|+.+.|.|.+.+ .|.+.+.|+|+|..+... .+.++.. .+..|.|.++..+|+|.|+|.|.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 567789999999999999 688999999999765432 2223322 2468999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy2776 590 TSLDLSLQV 598 (803)
Q Consensus 590 ~s~s~~l~V 598 (803)
...++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999888875
No 157
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.20 E-value=6.1e-11 Score=93.53 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=54.0
Q ss_pred EEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEE
Q psy2776 162 VTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229 (803)
Q Consensus 162 ~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 229 (803)
+.|.|.+.|.|.|++.|+|++.++......+.....+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46999999999999999999998765422223334579999999999999999999987665554443
No 158
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.19 E-value=6.9e-11 Score=97.87 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeec--CCCceEEeeCCeeccCCCCe---EE--EeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 687 KGTIRLMAKVKAS--PAPSIVWFRNNKPLLSSPKK---RE--IFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 687 g~~v~L~C~~~g~--p~~~v~W~~~~~~l~~~~~~---~~--~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
|+.+.|.|.+.|. |.|.+.|++++..+...... .. ......++|.|.++ +.+|+|.|+|.|.|..|..+.++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNA-TLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCC-ChhhCEEEEEEEccCCCceEEEE
Confidence 7899999999999 88899999987765322111 01 11234578999999 89999999999999999999999
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8876
No 159
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.19 E-value=9.1e-11 Score=95.35 Aligned_cols=77 Identities=19% Similarity=0.412 Sum_probs=61.4
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET- 225 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~- 225 (803)
...|++..+.+|+.+.|.|.+.|.|.| +|.|+|++..+... .......|.|.++ .|+|.|.|.|.|..|....
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~---~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP---PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC---CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 345677889999999999999999999 79999999988641 2233457999887 5789999999999997654
Q ss_pred EEEE
Q psy2776 226 SCTL 229 (803)
Q Consensus 226 s~~l 229 (803)
.++|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 4444
No 160
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.19 E-value=5.6e-11 Score=96.38 Aligned_cols=67 Identities=22% Similarity=0.391 Sum_probs=53.6
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeecc----CcCeEEEEEEEcCCCCeEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR----ADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~----~dsG~Y~C~a~n~~g~~s~ 592 (803)
+.|.|.+.|.|.|.++|+|+|..+......++......+.|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 479999999999999999999988654333344444567899998854 7899999999999998543
No 161
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.19 E-value=7.3e-11 Score=97.19 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=58.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCe---e--ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGA---E--ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~---~--i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
|+.+.|.|.+.|.|.|.+.|+|++. . +................|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6889999999999999999999742 1 1111100001112346899999999999999999999999999999887
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 162
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.18 E-value=6.8e-11 Score=96.62 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=53.7
Q ss_pred EEEEEEEeecCCCceEEeeCCeecc--------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEE
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLL--------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGAR 760 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~ 760 (803)
++|.|.+.|.|.|.+.|++++.... .+.++.... ..+|.|.++ ..+|+|.|.|.|.|.+|.+ +.++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHV-LEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec---CCeEEECcC-CcccCEEEEEEEEeCCCCCCceEEE
Confidence 5799999999999999999643211 233443322 246999999 7899999999999999988 67776
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|+|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 654
No 163
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.18 E-value=2.2e-10 Score=96.79 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=62.9
Q ss_pred CeeeccCcCeeeecC---CcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCC-CCcceEEEEEEE
Q psy2776 145 PVIQEPLKDSVAGFQ---SSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCS-ESSEGRYTCKAT 217 (803)
Q Consensus 145 p~i~~~~~~~~v~~G---~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 217 (803)
|.|...|.++.+.+| +.+.|.|.+.|+|.|.++|++++..+.. ..+... ...|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CCeEEEccCCccCcCEEEEEEEE
Confidence 455666666666555 6899999999999999999999988752 222222 3568898865 599999999999
Q ss_pred cCCcCeee-EEEE
Q psy2776 218 NEAGTAET-SCTL 229 (803)
Q Consensus 218 n~~g~~~~-s~~l 229 (803)
|..|.... .+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 99997654 4444
No 164
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.17 E-value=1.2e-10 Score=94.46 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=55.8
Q ss_pred EEEEEEEee-cCCCceEEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 690 IRLMAKVKA-SPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 690 v~L~C~~~g-~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+.|+|.+.+ .|.+.+.|++||..+.... ++.+........|.|.++ ..+|+|.|+|.|.|.+|.++.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKA-SLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcC-CcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 6888999999999886432 233333345578999999 799999999999999999988765
No 165
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.17 E-value=1.2e-10 Score=94.26 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=52.0
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeecc----CcCeEEEEEEEcCCCCeEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVR----ADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~----~dsG~Y~C~a~n~~g~~s~ 592 (803)
+.|.|.+.|.|.|+++|+|+|..+.......+.....+++|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999999999999999987543332333334456888887764 3789999999999998654
No 166
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.16 E-value=1.3e-10 Score=93.89 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=51.8
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec----cCcCeEEEEEEEcCCCCeEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV----RADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~----~~dsG~Y~C~a~n~~g~~s~s 593 (803)
+.|.|.+.|+|.|.++|+|+|..+......++.....+++|.|.++. .+|+|.|+|.|+|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999999999999999987753322233333345789998874 246999999999999976543
No 167
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.15 E-value=3.5e-10 Score=94.10 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=66.5
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
..+..|+.+.|.|.+.|.|.+.+.|++++..+.......... ......|.|.++ ..+|.|.|.|.|.|.+|..+.++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESV-VPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeEC-CcccCEEEEEEEEECCceEEEEEE
Confidence 346679999999999999999999999999887554443222 234567999999 789999999999999999988887
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 764
No 168
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.13 E-value=2.8e-10 Score=93.81 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc--ceeeeEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKVVATNELG--SATHGAR 760 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G--~~~~~~~ 760 (803)
|++++|.|.+.|.|.+.+.|++.++...... +..+......++|.|.++ +.+|+|.|.|.|+|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHA-TVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCC-CcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999999999999998776432111 111112234678999999 79999999999999987 6677777
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|+|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 766
No 169
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.12 E-value=2e-10 Score=95.05 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=60.6
Q ss_pred cceeEEEEEEcCc--CCCeeEEeeCCeeecCCCcE---EEE--ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 523 KSQWKVEVKYFGF--PRPEISWMKNGAEITDSKAC---RIF--IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 523 g~~v~l~C~~~g~--p~~~v~W~~~g~~i~~~~~~---~~~--~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
|+.+.|.|.+.|. |.+.+.|.+++..+...... ... .....++|.|.+++.+|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 88999999887655332111 111 1123579999999999999999999999999999998
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 81 v~v~ 84 (84)
T cd05742 81 VNIH 84 (84)
T ss_pred EEEC
Confidence 8773
No 170
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.12 E-value=1.9e-10 Score=92.83 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.+...|....+.+|++++|+|.+.|.|.+ .+.|+|||..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~--~~dsG~Y~C~a~~~- 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA--NNDSGEYRCQTQGS- 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec--ccCCEEeEEECCCC-
Confidence 34555667789999999999999998874 6999999998732 1236888888 58999999999986
Q ss_pred cceeeeEEEE
Q psy2776 753 GSATHGARVT 762 (803)
Q Consensus 753 G~~~~~~~l~ 762 (803)
..+..+.|+
T Consensus 69 -~~S~~v~l~ 77 (78)
T cd05752 69 -SLSDPVHLE 77 (78)
T ss_pred -cCCCCEEEe
Confidence 444445444
No 171
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.12 E-value=4.1e-10 Score=95.14 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=64.5
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEee--------CCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFR--------NNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--------~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+.++.+.+|+++.|.|.+.+.|.+.+.|++ ++.....+.|+....+ ....+|.|.++ +.+|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDV-SLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcC-CcccCEEEEEEeE
Confidence 346789999999999999999999999986 3333334566665333 45678999999 7999999999999
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
+. ...+..+.|+|
T Consensus 83 t~-~~~~~~~~l~v 95 (95)
T cd07701 83 TM-PVKTSKAYLTV 95 (95)
T ss_pred ee-cCccEEEEEEC
Confidence 95 44477777765
No 172
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.11 E-value=2.7e-10 Score=94.56 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=63.6
Q ss_pred EeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
+..+....+.+|++++|.|.+.+ .|.+.+.|++++..+.... . .....|.|.++ +.+|+|.|.|.|.|..|.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v-~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNV-QLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCC-CHHHCEEEEEEEeccCCe
Confidence 34455678899999999999975 6888999999987653321 1 12347999999 799999999999999999
Q ss_pred eeeeEEE
Q psy2776 755 ATHGARV 761 (803)
Q Consensus 755 ~~~~~~l 761 (803)
..+++.|
T Consensus 78 ~~~~~~l 84 (85)
T cd05754 78 DEATATL 84 (85)
T ss_pred EeEEEEE
Confidence 9988876
No 173
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.10 E-value=3.2e-10 Score=91.57 Aligned_cols=67 Identities=18% Similarity=0.398 Sum_probs=55.6
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
|.+...|....+.+|++++|+|.+.+.|.+ .+.|+|++..+. .....|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 345566777889999999999999987764 699999998763 13457999999 99999999999875
No 174
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.09 E-value=5e-10 Score=90.71 Aligned_cols=70 Identities=21% Similarity=0.396 Sum_probs=55.7
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCC----CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDS----KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~----~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
+.|.|.+.+ .|.+.+.|+|+|..+... .++.+......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 677899999999988643 1223333345678999999999999999999999999887765
No 175
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.09 E-value=5e-10 Score=93.55 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=64.7
Q ss_pred eeEEecCCeEEEEEEEee-----cCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 681 EKTVKEKGTIRLMAKVKA-----SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
...+.+|+++.|.|...+ +|.|.+.|+||+.++....+.. . ....|.|.++ ..+|+|.|+|.|.|.+|..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v-~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNV-TEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeC-ChhhCEEEEEEEEecCCCE
Confidence 356788999999997643 2578999999999997655432 2 3347999999 7999999999999999999
Q ss_pred eeeEEEEEEe
Q psy2776 756 THGARVTVDV 765 (803)
Q Consensus 756 ~~~~~l~V~~ 765 (803)
...+...+.+
T Consensus 79 ~~~~t~t~~l 88 (92)
T cd05757 79 QYNVTRTISL 88 (92)
T ss_pred EEEEEEEEEE
Confidence 8877777765
No 176
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.08 E-value=8e-10 Score=90.54 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=55.9
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
|.+..+..|+++.|.|.+.+ |.+.+.|++||.+|..+.......++ .|.|.++ +.+|+|.|+|.|.+.-
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~---~L~I~nv-~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD---GLLIFNA-SEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC---cEEEeCC-CHHHCEEEEEEEEecc
Confidence 45678899999999999864 77899999999999876433333333 4999999 7999999999999863
No 177
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.08 E-value=1.1e-09 Score=92.15 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=62.1
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeec--------cCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+..+.+|+++.|.|.+.|.|.|.+.|++.+..+ ..+.++.+... .....|.|.++ +.+|+|.|+|.|..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV-~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNV-QLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCC-CcccCEEEEEEEEe
Confidence 3678999999999999999999999998876532 23445544333 34578999999 79999999999998
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
.-..++.+.|+|
T Consensus 84 -~~~~~~~~~~~v 95 (95)
T cd05882 84 -MPVRTAKATVTV 95 (95)
T ss_pred -eccccEEEEEEC
Confidence 334455555543
No 178
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.07 E-value=1.2e-09 Score=91.75 Aligned_cols=81 Identities=23% Similarity=0.261 Sum_probs=67.2
Q ss_pred cceEEeecceeEEEEEEcCcCCC-eeEEeeCCeeecCC--CcEEEEec----CCeEEEEEeeeccCc-CeEEEEEEEcCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDS--KACRIFID----EETSTIAIYSVVRAD-TSTYTVTATNAA 587 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~--~~~~~~~~----~~~~~L~i~~v~~~d-sG~Y~C~a~n~~ 587 (803)
..+.+.+|+++.|.|.+.+.|+| .+.|.+++..|..+ .++.+... +..++|.|.++...| .|.|.|.|.|..
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 35778899999999999889987 57899888877654 56666543 356899999998877 799999999999
Q ss_pred CCeEEEEEE
Q psy2776 588 GSTSLDLSL 596 (803)
Q Consensus 588 g~~s~s~~l 596 (803)
|.+...+.|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 999888776
No 179
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.07 E-value=1.4e-09 Score=90.53 Aligned_cols=81 Identities=25% Similarity=0.414 Sum_probs=66.7
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ......|.|.++..+|+|.|.|.|.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 456679999999999999999999999998887554333222 2345689999999999999999999999998888887
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 180
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.06 E-value=7.8e-10 Score=91.20 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCc--EEEEe--cCCeEEEEEeeeccCcCeEEEEEEEcCCC--CeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKA--CRIFI--DEETSTIAIYSVVRADTSTYTVTATNAAG--STSLDLSL 596 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~--~~~~~--~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g--~~s~s~~l 596 (803)
|+++.|.|.+.+.|.+.+.|.+.++....... ..... ....+.|.|.+++.+|+|.|+|.|+|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 78999999999999999999987764322110 01111 12257999999999999999999999876 57777777
Q ss_pred EEe
Q psy2776 597 QVL 599 (803)
Q Consensus 597 ~V~ 599 (803)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 774
No 181
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.06 E-value=5e-10 Score=91.45 Aligned_cols=70 Identities=20% Similarity=0.375 Sum_probs=53.6
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeec--------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEIT--------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSL 596 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~--------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l 596 (803)
++|.|.+.|.|.|.+.|+|++.... ...++.+. .+++|.|.++..+|+|.|+|.|.|..|.. +.++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5799999999999999999753221 11233221 24689999999999999999999999986 666666
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 54
No 182
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.04 E-value=1.2e-09 Score=91.99 Aligned_cols=81 Identities=28% Similarity=0.528 Sum_probs=59.8
Q ss_pred CeeeccCcCeeeec---CCcEEEEEEECccCCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCC-CCcceEEEEEEEcC
Q psy2776 145 PVIQEPLKDSVAGF---QSSVTLECVVSGVPTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCS-ESSEGRYTCKATNE 219 (803)
Q Consensus 145 p~i~~~~~~~~v~~---G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~ 219 (803)
|.|...+.+..+.+ |+.+.|.|.+.|+|.|.++|+|++..+.. ....+......|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 45555566655443 46799999999999999999999988742 111222223578999887 49999999999999
Q ss_pred CcCeee
Q psy2776 220 AGTAET 225 (803)
Q Consensus 220 ~g~~~~ 225 (803)
.|....
T Consensus 82 ~G~~~S 87 (91)
T cd04967 82 VGTVLS 87 (91)
T ss_pred CCEEEe
Confidence 997543
No 183
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.04 E-value=1.5e-09 Score=99.42 Aligned_cols=117 Identities=14% Similarity=0.250 Sum_probs=77.4
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
+|+|.+++.+|+|.|.|.+.+..+.... .+.|.+..+|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~------------------------------------------~~~l~v~~~P 39 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQ------------------------------------------IIQLSVSEPP 39 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceee------------------------------------------EEEEEEecCC
Confidence 6999999999999999999987666554 5566777776
Q ss_pred CCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecC----CCcEE---EEecCC-----eEEEEEe
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITD----SKACR---IFIDEE-----TSTIAIY 569 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~----~~~~~---~~~~~~-----~~~L~i~ 569 (803)
..... . .......|+.+.|.|.+.|. |. +.+.|+++|..... ..... .....+ .+.|.|.
T Consensus 40 ~v~~~---~---~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~ 113 (139)
T cd05771 40 RVRLS---L---EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLE 113 (139)
T ss_pred ceEEe---C---CCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEec
Confidence 54211 1 12233468899999999996 54 48999999854221 01111 111111 2466666
Q ss_pred eeccCcCeEEEEEEEcCCC
Q psy2776 570 SVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g 588 (803)
.-..++.+.|+|.+.+...
T Consensus 114 ~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 114 PGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccCCCCEEEEEEEcCCC
Confidence 5555567799999988644
No 184
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.03 E-value=8.6e-10 Score=92.42 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=59.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC--CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC-ccee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVATNEL-GSAT 756 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~-G~~~ 756 (803)
..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.... ...+.... ..|.|.++ +.+|+|.|.|.|.|.. +...
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~-~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSV-SPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccC-CHHHCEEEEEEEecCccceeE
Confidence 3567889999999999987 888999999998876543 11222222 24889999 7999999999999764 4445
Q ss_pred eeEEEEE
Q psy2776 757 HGARVTV 763 (803)
Q Consensus 757 ~~~~l~V 763 (803)
.++.|.|
T Consensus 80 ~~~~l~V 86 (89)
T cd04979 80 ATYSLNV 86 (89)
T ss_pred eEEEEEE
Confidence 5565555
No 185
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.02 E-value=1.5e-09 Score=88.91 Aligned_cols=67 Identities=16% Similarity=0.368 Sum_probs=55.4
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
|.+..+.+|+++.|.|.+.+ |.+.+.|++++..+... ++.. ....|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~--~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL--YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE--ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 56778889999999999865 67899999999988643 3333 23469999999999999999999875
No 186
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.02 E-value=2e-09 Score=90.94 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=62.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--------eeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--------AEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--------~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+++.|.|.+.+.|.+.+.|++.+ .....+.++.+... ....+|.|.++..+|+|.|+|.+.+..
T Consensus 6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred eEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 678899999999999999999999998632 22223345555333 345799999999999999999999854
Q ss_pred CCeEEEEEEEE
Q psy2776 588 GSTSLDLSLQV 598 (803)
Q Consensus 588 g~~s~s~~l~V 598 (803)
+ .+.++.|.|
T Consensus 86 ~-~~~~~~l~v 95 (95)
T cd07701 86 V-KTSKAYLTV 95 (95)
T ss_pred C-ccEEEEEEC
Confidence 3 477777664
No 187
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.00 E-value=1.9e-09 Score=89.53 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=63.3
Q ss_pred cCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 150 PLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
.|....+.+|++++|.|.+.+ .|.+.+.|++++..++.... .....|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 356677889999999999974 78889999999876543321 23457999999999999999999999999888876
Q ss_pred E
Q psy2776 229 L 229 (803)
Q Consensus 229 l 229 (803)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 6
No 188
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.98 E-value=2.3e-09 Score=89.58 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=62.6
Q ss_pred ceEEeecceeEEEEEEcC-----cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-----FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-----~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.+.+.+|..+.|.|...+ +|.|.+.|+|++.++....+. +. .+..|.|.++..+|+|.|+|.|.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 467888999999998543 357899999999998765433 22 457899999999999999999999988876
Q ss_pred EEEEEEE
Q psy2776 592 LDLSLQV 598 (803)
Q Consensus 592 ~s~~l~V 598 (803)
..+...+
T Consensus 80 ~~~t~t~ 86 (92)
T cd05757 80 YNVTRTI 86 (92)
T ss_pred EEEEEEE
Confidence 6665554
No 189
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.97 E-value=5.8e-09 Score=87.72 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=60.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeee--------cCCCcEEEEecC-CeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI--------TDSKACRIFIDE-ETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i--------~~~~~~~~~~~~-~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+++.|.|.+.+.|.+.+.|++++..+ ....++.+.... ....|.|.++..+|+|.|+|.+...
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~- 84 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM- 84 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence 678899999999999999999999999877543 122344433322 3579999999999999999999883
Q ss_pred CCeEEEEEEE
Q psy2776 588 GSTSLDLSLQ 597 (803)
Q Consensus 588 g~~s~s~~l~ 597 (803)
-..++.+.|.
T Consensus 85 ~~~~~~~~~~ 94 (95)
T cd05882 85 PVRTAKATVT 94 (95)
T ss_pred ccccEEEEEE
Confidence 3444444444
No 190
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.96 E-value=8.7e-09 Score=85.54 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=69.3
Q ss_pred eeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccCCCCeEEEeeC-----ceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDG-----ENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
...|.+|+.+.|.|.++++|+|. +.|.+.+.++.......+.... -.++|.+.++ ..+|+|.|+|.|+|..++
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rl-k~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRL-KGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeec-ChhhCcEEEEEEECCCCe
Confidence 46799999999999999999997 9999998877554442222222 2478999999 899999999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999988874
No 191
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.95 E-value=2.2e-09 Score=88.14 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=56.9
Q ss_pred eEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeE
Q psy2776 682 KTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGA 759 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~ 759 (803)
..+.+|++++|.|.+. +.|.+.+.|+|+|..+... .....|.|.++ +.+|+|.|+|.|.|..|.. +..+
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~-~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQA-TLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECcc-CHHHCEEEEEEEEeCCceecCCCE
Confidence 3688999999999985 4567789999999876421 22457999999 7999999999999999865 4444
Q ss_pred EEE
Q psy2776 760 RVT 762 (803)
Q Consensus 760 ~l~ 762 (803)
.|+
T Consensus 80 ~i~ 82 (83)
T cd05753 80 SIT 82 (83)
T ss_pred EEE
Confidence 444
No 192
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.94 E-value=3e-09 Score=89.08 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=62.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC-CCCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNA-AGSTSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~-~g~~s~s 593 (803)
.+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+.... ..++... ...|.|.++..+|+|.|.|.|.|. .+....+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 567889999999999987 888999999998776542 1222222 235999999999999999999865 4556777
Q ss_pred EEEEEee
Q psy2776 594 LSLQVLG 600 (803)
Q Consensus 594 ~~l~V~~ 600 (803)
+.|.|..
T Consensus 82 ~~l~V~~ 88 (89)
T cd04979 82 YSLNVLE 88 (89)
T ss_pred EEEEEec
Confidence 8887753
No 193
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.93 E-value=1.7e-09 Score=89.89 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=57.6
Q ss_pred eeEEecCCeEEEEEEE-eecCCCceEEeeCCeec--cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 681 EKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPL--LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l--~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
...+.+|+.+.|.|.. .|.|.+.+.|++++.++ ..+.+..+.. ....|.|.+| +.+|+|.|.|.|+|.++..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v-~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKV-EASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeec-CHhhCceeEEEEEecccCC
Confidence 4678899999999966 78899999999998865 2344444443 2336999999 7999999999999988665
No 194
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.92 E-value=1.5e-08 Score=84.18 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=69.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecC-----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDE-----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~-----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
.+.|.+|+.+.|.|.+.++|+|. +.|.+++..+.+.....+.... ..+.|.|.++..+|+|.|+|.|+|+.+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 57799999999999999999997 9999998877655442222211 34799999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy2776 591 SLDLSLQVL 599 (803)
Q Consensus 591 s~s~~l~V~ 599 (803)
+.++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999998874
No 195
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.92 E-value=5e-09 Score=85.90 Aligned_cols=71 Identities=31% Similarity=0.609 Sum_probs=57.0
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc-ceeeeEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG-SATHGAR 760 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G-~~~~~~~ 760 (803)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+..+. .. |.|..+ +.+|+|.|+|.|.|..| ..+.++.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~~--~~~~~~-~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------NG--LFIPNV-SPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------SE--EEESSE-EGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------ee--eeeeee-ccccCEEEEEEEEeCCCCeEeeeEE
Confidence 568899999999999999999999999988775322 11 677777 78999999999999654 5567776
Q ss_pred EEE
Q psy2776 761 VTV 763 (803)
Q Consensus 761 l~V 763 (803)
|+|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 665
No 196
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.92 E-value=2.2e-08 Score=82.98 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=70.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeC-CeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++ +.+|+|.|.|.+.|..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeEEEEE
Confidence 45678899999999999988899999998 88887677777766665678999999 79999999999999999988777
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7765
No 197
>smart00409 IG Immunoglobulin.
Probab=98.92 E-value=2.2e-08 Score=82.98 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=70.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeC-CeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++ +.+|+|.|.|.+.|..|.....+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeEEEEE
Confidence 45678899999999999988899999998 88887677777766665678999999 79999999999999999988777
Q ss_pred EEEE
Q psy2776 760 RVTV 763 (803)
Q Consensus 760 ~l~V 763 (803)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7765
No 198
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.88 E-value=4.5e-09 Score=87.18 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=58.4
Q ss_pred cceeEEecCCeEEEEEE-EeecCCCceEEeeCCee-ccCCCCeEEEeeCceEEEEEecCCCCCCce-eEEEEEEccCcce
Q psy2776 679 FEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNKP-LLSSPKKREIFDGENIILELKEADSETDAG-DYKVVATNELGSA 755 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N~~G~~ 755 (803)
...+.|.+|+++.|.|. ..|.|.|.|.|++++.. +..+.|+.+..+ ..|.|.++ +.+|+| .|.|.|.|.+...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v-~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANV-EEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEE-ehhhCCCCeEEEEEcccccc
Confidence 35678999999999997 69999999999987654 444555444333 46999999 799999 7999999987554
No 199
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.88 E-value=9.4e-09 Score=79.55 Aligned_cols=63 Identities=32% Similarity=0.608 Sum_probs=51.9
Q ss_pred cCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 686 EKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
+|+++.|.|.+.+.|.+.+.|++++..+. ..... ......|.|.++ ..+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~--~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRL--SASGSTLTIKSV-SLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEE--ecCCcEEEEeeC-CcccCEEEEEEEecCCC
Confidence 48899999999999999999999998886 22222 233457999999 78999999999999876
No 200
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.87 E-value=6.3e-09 Score=86.85 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=56.8
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeec-c-------------CCCCeEEEe---eCceEEEEEecCCCCCCceeE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL-L-------------SSPKKREIF---DGENIILELKEADSETDAGDY 744 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l-~-------------~~~~~~~~~---~~~~~~L~i~~v~~~~D~G~Y 744 (803)
+.+.+|++|+|.|.+.+.|.+.+.|++++... . ...++.... +...+.|.|.++ +.+|+|+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCEEE
Confidence 35778999999999999999999999766321 1 122333333 445678999999 89999999
Q ss_pred EEEEEccCccee
Q psy2776 745 KVVATNELGSAT 756 (803)
Q Consensus 745 ~C~a~N~~G~~~ 756 (803)
.|.|.|..++..
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999988754
No 201
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.86 E-value=1e-08 Score=84.77 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCeEEEEEEEeecCCC--ceEEeeCCeeccCC---CC--eEE-EeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 687 KGTIRLMAKVKASPAP--SIVWFRNNKPLLSS---PK--KRE-IFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~---~~--~~~-~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
|+++.|.|.+.+.|.+ .+.|.+.+..+... .. ... ......++|.|.++ +.+|+|.|+|.|+|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENV-TLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecC-CcccCEEEEEEEeecceEeccc
Confidence 7899999999887654 78999877643211 11 100 11234678999999 7999999999999999999999
Q ss_pred EEEEEE
Q psy2776 759 ARVTVD 764 (803)
Q Consensus 759 ~~l~V~ 764 (803)
+.|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 999884
No 202
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.85 E-value=2e-08 Score=85.22 Aligned_cols=82 Identities=26% Similarity=0.335 Sum_probs=60.7
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCee--------ccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKP--------LLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~--------l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
....+.+|++++|.|.+.+.|.+.+.|++-+.. ...+.++.... .+..+.|.|.++ +.+|+|.|+|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNV-SLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccC-CcccCEEEEEEEec
Confidence 456789999999999999989999999852211 11234555432 234678999999 89999999999998
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
... .+.++.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 763 466666654
No 203
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.84 E-value=7.2e-09 Score=86.16 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=56.8
Q ss_pred ceEEeecceeEEEEE-EcCcCCCeeEEeeCCeee--cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 517 SQRLSVKSQWKVEVK-YFGFPRPEISWMKNGAEI--TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~g~~i--~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
...+.+|+.+.|.|. -.|.|.+.+.|++++..+ ....+. ......+.|.|.+|+.+|+|.|+|.|+|..+..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 567889999999997 567899999999998754 222222 233346799999999999999999999986544
No 204
>smart00409 IG Immunoglobulin.
Probab=98.82 E-value=7.7e-08 Score=79.60 Aligned_cols=82 Identities=30% Similarity=0.447 Sum_probs=69.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678899999999999988899999998 88887555666555444689999999999999999999999888877777
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 205
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.82 E-value=7.7e-08 Score=79.60 Aligned_cols=82 Identities=30% Similarity=0.447 Sum_probs=69.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678899999999999988899999998 88887555666555444689999999999999999999999888877777
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 206
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.82 E-value=1.7e-08 Score=84.34 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=57.6
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCC--eec----cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE-ccCc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL----LSSPKKREIFDGENIILELKEADSETDAGDYKVVAT-NELG 753 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l----~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~-N~~G 753 (803)
.+.+.+|+++.|.|.. +.|.|.+.||+.+ ... ..+.++.. .+ ..|.|.++ +.+|+|.|.|.|. |..|
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~--~~L~I~~~-~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TE--RGLLLRSL-QRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ec--CeEEEeeC-ChhHCEEEEEEEEccCCe
Confidence 3567889999999997 5899999999843 221 12233322 22 34999999 8999999999998 6888
Q ss_pred ceeeeEEEEE
Q psy2776 754 SATHGARVTV 763 (803)
Q Consensus 754 ~~~~~~~l~V 763 (803)
...+.+.|+|
T Consensus 79 ~~~~~~~l~v 88 (91)
T cd05871 79 QTLAKYTLHV 88 (91)
T ss_pred EEEEEEEEEE
Confidence 7888777777
No 207
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.81 E-value=1.4e-08 Score=83.37 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=53.0
Q ss_pred eeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 154 SVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
..+.+|++++|+|.+.+ .+.+.+.|+|++..+.. ......|.|.+++.+|+|.|+|.+.+..+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 46789999999999864 56668999999976642 2234679999999999999999999998743
No 208
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.81 E-value=2e-08 Score=77.65 Aligned_cols=63 Identities=35% Similarity=0.581 Sum_probs=52.7
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
+|+.+.|.|.+.+.|.+.+.|++++..+.. ..........|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC-CCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999988889999999999887762 333334556899999999999999999998764
No 209
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.79 E-value=0.0015 Score=83.00 Aligned_cols=221 Identities=14% Similarity=0.117 Sum_probs=123.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe-eec--CCCcEEEEecCCeEEEEEeeeccCcCeEEEE--EEEcCCCCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA-EIT--DSKACRIFIDEETSTIAIYSVVRADTSTYTV--TATNAAGSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-~i~--~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C--~a~n~~g~~s 591 (803)
...+..|+.++|.+.+.+.+...+.|..++. ... ++..+.. ...--|.|.. .|.|..+...
T Consensus 1876 ~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~H--------------sY~~~G~Y~VtV~A~N~Vs~~~ 1941 (2740)
T TIGR00864 1876 KKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFSH--------------SFPRVDDHMVNLRAKNEVSCAQ 1941 (2740)
T ss_pred cccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEEe--------------ecCCCCcEEEEEEEEeccceee
Confidence 3456789999999998887888889987542 211 1111110 1122344443 4456666655
Q ss_pred EEEEEEEeeeE------------------------eEeeecccccEEEeeeeC---------CccceEEEcccccCceeE
Q psy2776 592 LDLSLQVLGYI------------------------IQQQEKNSLKFTKVATLD---------PSTLQYTVENLRDKSEYY 638 (803)
Q Consensus 592 ~s~~l~V~~~p------------------------~~~~~~~~~~w~~~~~~~---------~~~~~~~~~~~~~~~~~~ 638 (803)
....+.|..+- ++...+-.+.|+...... +....|+. ....-|.
T Consensus 1942 a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~---~~~G~~~ 2018 (2740)
T TIGR00864 1942 ANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA---EAAGLLE 2018 (2740)
T ss_pred eeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc---CCCcEEE
Confidence 55555554442 222223345566443211 22222333 3566778
Q ss_pred EEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCC
Q psy2776 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSP 717 (803)
Q Consensus 639 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~ 717 (803)
.+++|.|.+|.........+.... . .. .+.. .......|..+.|.|.+...+. ..+.|-+++.......
T Consensus 2019 I~v~A~N~l~s~n~t~~i~VQ~~i--~------~~-~L~~-~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T 2088 (2740)
T TIGR00864 2019 IQLGAFNALGAENITLQLEAQDAL--M------DA-ALQA-GPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDT 2088 (2740)
T ss_pred EEEEEEcccCcccccEEEEEEehe--e------eE-EEee-cCcceecCceEEEEEEEccCCCcEEEEEEecCCCCcccc
Confidence 889999999986533322222111 0 00 1110 0123445889999999865444 4799999844321111
Q ss_pred CeEEEeeCceEEEEEecCCCCCCceeEE--EEEEccCcceeeeEEEEEEeeccCCCCCccc
Q psy2776 718 KKREIFDGENIILELKEADSETDAGDYK--VVATNELGSATHGARVTVDVEKVGRPSINSI 776 (803)
Q Consensus 718 ~~~~~~~~~~~~L~i~~v~~~~D~G~Y~--C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~ 776 (803)
+... +.- .....|.|. ..|.|.+....+.+.+.|.+.+=-+|.+...
T Consensus 2089 ------~~~~----~sH--tY~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~C~~P~V~i~ 2137 (2740)
T TIGR00864 2089 ------DEPR----AEH--EYLHPGDYRVQVNASNLVSFFSAHAEINVQVLACEEPEVDVV 2137 (2740)
T ss_pred ------CCce----eEE--EecCCccEEEEEEEEcceeeeeeEEEEEEEEecCCCCCcEec
Confidence 0111 111 234558885 5578999999999999998877667777655
No 210
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.77 E-value=2.1e-08 Score=82.92 Aligned_cols=77 Identities=18% Similarity=0.118 Sum_probs=57.9
Q ss_pred cceeEEEEEEcCcCC--CeeEEeeCCeeecCC---CcEEEE---ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 523 KSQWKVEVKYFGFPR--PEISWMKNGAEITDS---KACRIF---IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 523 g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~---~~~~~~---~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
|+++.|.|.+.+.+. ..+.|.+.+..+... ...+.. .....++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 788999999987654 577998877643221 110111 122357999999999999999999999999999999
Q ss_pred EEEEe
Q psy2776 595 SLQVL 599 (803)
Q Consensus 595 ~l~V~ 599 (803)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 99885
No 211
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.77 E-value=5.6e-08 Score=82.52 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=59.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeee--------cCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI--------TDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i--------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+++.|.|.+.+.+.+.+.|++.+..+ ....++.+.. ......|.|.+++.+|+|.|+|.+.+..
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 567899999999999998888999998632211 1124554432 2345689999999999999999999765
Q ss_pred CCeEEEEEEEE
Q psy2776 588 GSTSLDLSLQV 598 (803)
Q Consensus 588 g~~s~s~~l~V 598 (803)
..+.++.|.|
T Consensus 86 -~~~~~~~~~v 95 (95)
T cd05717 86 -VQTAKATVTV 95 (95)
T ss_pred -CceEEEEEEC
Confidence 3466666654
No 212
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.76 E-value=3.4e-08 Score=82.44 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=54.2
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--------------CcEEEEe---cCCeEEEEEeeeccCcCeEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--------------KACRIFI---DEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--------------~~~~~~~---~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
+.+.+|++++|.|.+.+.+.+.+.|+++++....+ .++.... ..+...|+|.++..+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 34678999999999999999999999776432111 1222221 334468999999999999999
Q ss_pred EEEEcCCCC
Q psy2776 581 VTATNAAGS 589 (803)
Q Consensus 581 C~a~n~~g~ 589 (803)
|.|.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999998765
No 213
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.76 E-value=4.1e-08 Score=81.77 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=56.8
Q ss_pred eEEecCCeEEEEEE-Eeec----CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 682 KTVKEKGTIRLMAK-VKAS----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 682 ~~v~~g~~v~L~C~-~~g~----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+..|....|.|. ..++ +.+.+.|||++.+|....+......+ ...|.|.++ +.+|+|.|+|+|.|.+|...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~-~~~L~I~~v-~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG-STYLHIIDV-SLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC-CCEEEEEEc-ChhhCEEEEEEEEEeeCCEE
Confidence 45667899999996 3333 66799999999998765543333222 235999999 79999999999999987764
Q ss_pred eeE
Q psy2776 757 HGA 759 (803)
Q Consensus 757 ~~~ 759 (803)
-.+
T Consensus 83 y~v 85 (95)
T cd05897 83 YNI 85 (95)
T ss_pred EEE
Confidence 333
No 214
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.74 E-value=3.7e-08 Score=82.26 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=58.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe--ee----cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE-cCCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA--EI----TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGS 589 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~--~i----~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~-n~~g~ 589 (803)
.+.+.+|+.+.|.|.. +.|.|.+.|+|.+. .. ..+.++.. ....|.|.++..+|+|.|+|.|. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE----ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3567889999999996 57889999998432 21 11223322 23569999999999999999998 57777
Q ss_pred eEEEEEEEEee
Q psy2776 590 TSLDLSLQVLG 600 (803)
Q Consensus 590 ~s~s~~l~V~~ 600 (803)
....+.|.|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 77788888753
No 215
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.74 E-value=4.6e-08 Score=80.09 Aligned_cols=71 Identities=30% Similarity=0.496 Sum_probs=57.6
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-CeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-STSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-~~s~s~~l 596 (803)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+....+ . |.|.++..+|+|.|+|.|.+..+ ..+.++.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------G--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------E--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------e--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 5688999999999999999999999999877763211 1 77889999999999999999654 45666666
Q ss_pred EE
Q psy2776 597 QV 598 (803)
Q Consensus 597 ~V 598 (803)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 216
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.72 E-value=5.9e-08 Score=80.84 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=58.7
Q ss_pred ceEEeecceeEEEEE-Ec----CcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-
Q psy2776 517 SQRLSVKSQWKVEVK-YF----GFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST- 590 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~-~~----g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~- 590 (803)
.+.+.+|....|.|. .. ..+.++++|+|++.++....+... ...+...|.|.++..+|+|.|+|+|++..|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 356778999999997 23 346679999999999875432211 11234579999999999999999999987654
Q ss_pred ---EEEEEEEE
Q psy2776 591 ---SLDLSLQV 598 (803)
Q Consensus 591 ---s~s~~l~V 598 (803)
+..+.|.|
T Consensus 83 y~vtr~~~l~v 93 (95)
T cd05897 83 YNITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEEE
Confidence 34444444
No 217
>PHA03376 BARF1; Provisional
Probab=98.72 E-value=8.5e-07 Score=80.42 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=52.7
Q ss_pred eEEeecceeEEEEEEcC---cCCCeeEEeeCC----eee-------------cCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 518 QRLSVKSQWKVEVKYFG---FPRPEISWMKNG----AEI-------------TDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g---~p~~~v~W~~~g----~~i-------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
..+..|+.+.|+|.... .+...|.|+|.+ ..+ +.-.++.+..+.++.+|.|.++..+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 45678999999999652 244688999942 111 1112344445567889999999999999
Q ss_pred EEEEEEEcCCCCeEE
Q psy2776 578 TYTVTATNAAGSTSL 592 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~ 592 (803)
.|+|..+........
T Consensus 101 tY~C~fQkge~~~~k 115 (221)
T PHA03376 101 NYLCRMKLGETEVTK 115 (221)
T ss_pred eEEEEEEcCCCceee
Confidence 999999876544333
No 218
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.68 E-value=7.3e-08 Score=80.01 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=57.4
Q ss_pred cceEEeecceeEEEEE-EcCcCCCeeEEeeCCee-ecCCCcEEEEecCCeEEEEEeeeccCcCe-EEEEEEEcCCCCe
Q psy2776 516 KSQRLSVKSQWKVEVK-YFGFPRPEISWMKNGAE-ITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGST 590 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~g~~-i~~~~~~~~~~~~~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~ 590 (803)
....+.+|+.+.|.|. ..|.|.|.+.|++++.. +..+.+ +.... .+.|.|.++..+|+| .|.|.|+|.....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~R--i~~~~-~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDER--VSMGQ-NGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccccccc--EEECC-CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 4678999999999998 69999999999987754 333333 33333 489999999999999 7999999986443
No 219
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.68 E-value=0.00081 Score=85.24 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=125.6
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCe-eecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE--EEcCCCCeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGA-EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT--ATNAAGSTSLDL 594 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~--a~n~~g~~s~s~ 594 (803)
..+..|+.++|.-...+-....++|..++. ....... .+ .-+....|.|... |.|..|....+.
T Consensus 1707 ~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p----------~~---tHtf~~~G~y~VtVta~N~vss~~~s~ 1773 (2740)
T TIGR00864 1707 NPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEP----------FM---SHSFPSAGLHLVTMKAFNELGSANASE 1773 (2740)
T ss_pred CcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCC----------ce---EEEccCCceEEEEEEEEccccccceeE
Confidence 345668899998887777888999987553 2111111 00 1124567888764 469999888888
Q ss_pred EEEEeeeE----eEeee-----------------------cccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 595 SLQVLGYI----IQQQE-----------------------KNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 595 ~l~V~~~p----~~~~~-----------------------~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
.+.|..+. +.... ...+.|..... ......-...-......|..++.|.|++
T Consensus 1774 ~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g-~s~~gk~v~~Tf~~aG~ytV~L~AsN~v 1852 (2740)
T TIGR00864 1774 EVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGG-SSKMGKHACMTFPDAGTFAIRLNASNAV 1852 (2740)
T ss_pred EEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCC-CccccceeEEecCCCeEEEEEEEEEccc
Confidence 88887665 11111 11233444321 1122233334455566778889999999
Q ss_pred CCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCce
Q psy2776 648 GLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGEN 727 (803)
Q Consensus 648 g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~ 727 (803)
+....+....+..... .+........+..|+.++|++.+...+...+.|.+++..-. +...+..
T Consensus 1853 s~~~~s~~~~VQe~I~----------~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~------~~t~~~t 1916 (2740)
T TIGR00864 1853 SGKSASREFFAEEPIF----------GLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPE------VLQPGPR 1916 (2740)
T ss_pred CcceeeeeEEEEEecc----------eEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCce------eecCCCe
Confidence 8877655444432110 01111223457789999999999877888899998753211 1112222
Q ss_pred EEEEEecCCCCCCceeE--EEEEEccCcceeeeEEEEEEe
Q psy2776 728 IILELKEADSETDAGDY--KVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y--~C~a~N~~G~~~~~~~l~V~~ 765 (803)
..-. ..-.|.| +..|+|.++...+.+.+.|..
T Consensus 1917 ~~Hs------Y~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864 1917 FSHS------FPRVDDHMVNLRAKNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred EEee------cCCCCcEEEEEEEEeccceeeeeEEEEEEE
Confidence 2222 2344665 678999999988888777753
No 220
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.67 E-value=6e-08 Score=75.48 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=47.1
Q ss_pred cceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcCeEEEEEE
Q psy2776 523 KSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 523 g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a 583 (803)
|+.++|+|.+ .+.+...+.|++++..+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7778889999999886655433333332222 13999999999999999987
No 221
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.67 E-value=8.3e-08 Score=76.83 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=48.1
Q ss_pred EEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeC----ceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|+|... |.|++.++||+|+++|...... ...+ ...+|.|... ..+|.+.|+|.|.|.++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t~~s~L~~~~~-~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVSVSNTIRFPVD-RKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEEEEEEEEEEee-eccCCcEEEEEEEChhhCC
Confidence 68999985 4599999999999999653211 1111 2346888887 7899999999999998865
No 222
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.66 E-value=2.6e-07 Score=77.07 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeec--------cCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL--------LSSPKKREIF-DGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.++++.+|+++.|+|.+.+.....+.|++-+..+ ..+.|+.... ++...+|.|.++ +.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~v-q~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNV-SLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcC-CcccCEEEEEEEEc
Confidence 4578999999999999998866667776644322 3667777665 567889999999 79999999999985
No 223
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.65 E-value=5.7e-08 Score=75.64 Aligned_cols=61 Identities=18% Similarity=0.408 Sum_probs=47.0
Q ss_pred CCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCce--EEEEEecCCCCCCceeEEEEE
Q psy2776 687 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGEN--IILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 687 g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~--~~L~i~~v~~~~D~G~Y~C~a 748 (803)
|+.++|.|.+ .+.|...+.|++++..+.............. ..|.|.++ +.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNV-TPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSC-TGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccC-CHHHCEEEEEEC
Confidence 7899999999 7778889999999887654443333333221 23999999 799999999987
No 224
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.64 E-value=1.6e-07 Score=77.27 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=52.8
Q ss_pred eEEEEEEEee-cCCCceEEeeCCeeccCCCCeEE-EeeCc----eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 689 TIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKRE-IFDGE----NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 689 ~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
++.|.|.+.| .|.+.++|+++|.++........ ..++. .+.|.|... ..+|.|.|+|.|.|..........++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPS-DHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCc-eecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999987 58899999999998865422111 12222 346778776 56788999999999886665555555
Q ss_pred EE
Q psy2776 763 VD 764 (803)
Q Consensus 763 V~ 764 (803)
++
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 43
No 225
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.63 E-value=2.2e-07 Score=75.59 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=61.9
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.+..+..|+.+.|.|...+ +...+.|++||.++..+.++....+| |.|.++ +..|+|.|.|.|. ..|-...-+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~-~~~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVT-SPEHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEEC-CHhhCEEEEEEEe-cCCCeEEEE
Confidence 3567889999999999986 46699999999999877665544433 678888 7899999999998 666666556
Q ss_pred EEEEEe
Q psy2776 760 RVTVDV 765 (803)
Q Consensus 760 ~l~V~~ 765 (803)
.+.+.+
T Consensus 77 ~y~l~v 82 (85)
T cd05872 77 SYSLNV 82 (85)
T ss_pred EEEEEE
Confidence 665544
No 226
>KOG0613|consensus
Probab=98.60 E-value=3.2e-07 Score=106.27 Aligned_cols=450 Identities=13% Similarity=0.077 Sum_probs=258.2
Q ss_pred eeecCCcEEEEEEECccCCCeeEEEEcCe------eccceeEEE---ecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 155 VAGFQSSVTLECVVSGVPTPDIKWYKDDS------LIKGRNITY---ENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~p~p~i~W~~~~~------~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
...+|....|.-.+.+.|.+...|-..+. +.......+ .....++-+.....+|.+.|.-.-.+..+ ...
T Consensus 51 ~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~ 129 (1205)
T KOG0613|consen 51 QVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-VVP 129 (1205)
T ss_pred eccCCcceeeeeeeccccccCCCCcccccchhhcccccccccccccccccccccccccccccccccccccccccCC-ccc
Confidence 34455555555555555555544533322 222111111 11223344445555666666555555444 333
Q ss_pred EEEE-EEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCc
Q psy2776 226 SCTL-LVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTP 304 (803)
Q Consensus 226 s~~l-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (803)
+..+ .....+.+...+..+..........+.....+......+++..........|..++.-..+
T Consensus 130 ~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~-------------- 195 (1205)
T KOG0613|consen 130 SPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTD-------------- 195 (1205)
T ss_pred cchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccC--------------
Confidence 3332 2233344555555555555555555555555555566777777777766666544432221
Q ss_pred cccccccCCceeeec--cccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 305 AVEFLSKLPSVTLVP--HLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 305 ~~~~~~~~~~~~~~~--~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
...... -...+.+.|.+|.|.+...|+.+|..+..+....+.......-+.|..+-..+.|.|.....|
T Consensus 196 ---------~s~~~~a~~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~ 266 (1205)
T KOG0613|consen 196 ---------DSTDTDAHYESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILG 266 (1205)
T ss_pred ---------CcceeccccceeEEEEEecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhc
Confidence 111111 134467889999999999999999999888777776666666677777777777877665555
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
..+...- ..+..+..|.+....+.+.|+|...+..+......
T Consensus 267 ~l~e~~~-----------------------------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v--------- 308 (1205)
T KOG0613|consen 267 YLIEQRK-----------------------------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV--------- 308 (1205)
T ss_pred chhhhcc-----------------------------cCCCccccccccCCccccceeeecccCCcccceee---------
Confidence 4333211 12345567777788888888998888777766621
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eE
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-IS 541 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~ 541 (803)
....+.-.-...|.. .....+..+.+.+............+..+.+.|...+.+.+. +.
T Consensus 309 ~~~~~i~~~~~~p~~--------------------~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~ 368 (1205)
T KOG0613|consen 309 TEEAPIGKGKPGPES--------------------LQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQ 368 (1205)
T ss_pred eEEeeccccccCchh--------------------hhhhccCCccccccccccceeccccCcceeecccccCCcCCchhe
Confidence 222221111111111 111111111222233333355667778899999999998886 99
Q ss_pred EeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeee
Q psy2776 542 WMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATL 619 (803)
Q Consensus 542 W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~ 619 (803)
|++++.....+. .+..........+.|..+...+.+.|.|.|.|..|.........|....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~----------------- 431 (1205)
T KOG0613|consen 369 GYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEM----------------- 431 (1205)
T ss_pred eecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhccccc-----------------
Confidence 999887766553 2222233344678889999999999999999998875544444443321
Q ss_pred CCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecC--CeEEEEEEEe
Q psy2776 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK--GTIRLMAKVK 697 (803)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g--~~v~L~C~~~ 697 (803)
....|.+...........+ +.+.+.|...
T Consensus 432 -------------------------------------------------~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~ 462 (1205)
T KOG0613|consen 432 -------------------------------------------------PGTQPPKFKKDVSTTDLLTVKDEITVRTPDS 462 (1205)
T ss_pred -------------------------------------------------CCCCCccccccccccccccCCcccccccCCC
Confidence 1112222233333333344 7899999998
Q ss_pred ecCCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 698 ASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 698 g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.+ .++|++++.+. ..+......+...+|.+.-. +..|+|.|.-...-.-|..
T Consensus 463 s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~-~~~~~A~~~~a~~~~~~k~ 519 (1205)
T KOG0613|consen 463 STSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVA-SLSDGAQYTRALRTLQGKP 519 (1205)
T ss_pred CccccceeEeeccCCccc--ccccccccccchhhheeecc-CCCccchhhhhhhccCCCC
Confidence 88755 56677765553 22332333344556777666 6889999966665544444
No 227
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.59 E-value=3e-07 Score=76.69 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=60.3
Q ss_pred ceeEEecCCeEEEEEEE------e-----ecCCCceEEeeCCeeccCCCC-----eEEEeeCceEEEEEecCCCCCCcee
Q psy2776 680 EEKTVKEKGTIRLMAKV------K-----ASPAPSIVWFRNNKPLLSSPK-----KREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~------~-----g~p~~~v~W~~~~~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
....+.+|+++.|.|.. . ......+.|+|++..+..... .++...+. .|.|.++ ..+|+|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa-~~eDSG~ 84 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPA-ELQDSGL 84 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeC-ChhhCeE
Confidence 34578899999999986 1 122347999999766554332 24444455 6999999 7999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy2776 744 YKVVATNELGSATHGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+|++.|.-.-...++.|+|
T Consensus 85 Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 85 YTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEECCCCcceEEEEEEEC
Confidence 99999999988777777664
No 228
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.56 E-value=2.8e-07 Score=76.89 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=57.1
Q ss_pred eeeecCCcEEEEEEEC-----------ccCCCeeEEEEcCeecccee------EEEecCeeEEEEecCCCCcceEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVS-----------GVPTPDIKWYKDDSLIKGRN------ITYENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~-----------g~p~p~i~W~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
..+.+|+++.|.|..- ......+.|+|++..+.... .........|.|.++..+|+|.|+|++
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 5677999999999961 11223699999974433211 133334567999999999999999999
Q ss_pred EcCCcCeeeEEEEEE
Q psy2776 217 TNEAGTAETSCTLLV 231 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V 231 (803)
.|.....+.+++|.|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 999887777777654
No 229
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.54 E-value=9.8e-07 Score=73.64 Aligned_cols=70 Identities=6% Similarity=0.036 Sum_probs=55.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeee--------cCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEI--------TDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i--------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
+..+.+|+++.|+|.+.+.....+.|++-+..+ ..+.|+.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 577899999999999998877778887765332 3446666554 345678999999999999999999763
No 230
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.54 E-value=2.9e-07 Score=77.24 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.|.+...+. ..|.+|++++|+|... .+...+.|+|+|................|.|.+++.+|+|.|+|...+..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 355555554 4678999999999986 56778999999875442222223445679999999999999999999863
No 231
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.53 E-value=3.7e-07 Score=73.08 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=48.6
Q ss_pred eEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEec---CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 526 WKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFID---EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 526 v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
++|+|.. .|+|++.++|+|++++|..... ..... ...++|.|.....+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6899996 5679999999999999965321 00000 023579999999999999999999997753
No 232
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.47 E-value=1e-06 Score=72.45 Aligned_cols=72 Identities=22% Similarity=0.393 Sum_probs=50.2
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEE
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQ 597 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~ 597 (803)
+.|+|.+.| .|.+.++|+|+|+.+............+ .+.|.|.....+|.|.|+|.|.|..... ..++.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 689999987 6889999999999886542211111111 2578888877788999999999986543 4444443
No 233
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.47 E-value=8.1e-07 Score=72.25 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=59.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE-cCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~-n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|...+. .+.+.|+++|..+..+.++.... .-|.|.+++..|+|.|.|.+. +..-.......
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~ 79 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSEEEGFQQLVASYS 79 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEecCCCeEEEEEEE
Confidence 5778999999999999874 66999999999987655544332 237899999999999999986 44444555555
Q ss_pred EEE
Q psy2776 596 LQV 598 (803)
Q Consensus 596 l~V 598 (803)
|.|
T Consensus 80 l~v 82 (85)
T cd05872 80 LNV 82 (85)
T ss_pred EEE
Confidence 555
No 234
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.44 E-value=2.7e-07 Score=74.29 Aligned_cols=73 Identities=21% Similarity=0.426 Sum_probs=49.2
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecC-CCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
|.+...+.......++ ++|.|.+.+.| .+.+.|+ +...... ............|.|.++ ..+|.|.|+|+|+|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v-~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNV-TRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSC-CGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccC-CHHhCcEEEEEEEC
Confidence 4555555444444444 99999999887 7899999 1111111 111122345678999999 79999999999998
No 235
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.43 E-value=5.8e-07 Score=75.38 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=52.4
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
...|.+|++|+|+|... .+...+.|+++|...... + ....+....|.|.++ +.+|+|.|+|...|.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v-~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSM-KREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCC-ChhHCEEEEEEEECC
Confidence 45788999999999886 677889999998864321 1 122355678999999 789999999999997
No 236
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.43 E-value=4.7e-07 Score=72.89 Aligned_cols=73 Identities=33% Similarity=0.583 Sum_probs=50.6
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccC-CCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
|.|...+.......+. +.|.|.+.+.+ .+.+.|+...................|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5565555555554444 99999999877 7889999111111112222334567899999999999999999987
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.41 E-value=1.1e-06 Score=76.75 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=56.9
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCe---ec-----------cCCCCeEEEee--CceEEEEEecCCCCCCce
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK---PL-----------LSSPKKREIFD--GENIILELKEADSETDAG 742 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~---~l-----------~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G 742 (803)
+....+.+|++++|.|.+.+.+...+.|++... +. ....|+.+..+ ...+.|.|.++ +.+|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~~~DsG 83 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAA-QLSDSA 83 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCC-CHHHCE
Confidence 445678999999999999987888999998532 10 12345555443 36789999999 899999
Q ss_pred eEEEEEEccCc
Q psy2776 743 DYKVVATNELG 753 (803)
Q Consensus 743 ~Y~C~a~N~~G 753 (803)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999998643
No 238
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.40 E-value=1.6e-06 Score=75.20 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=57.8
Q ss_pred cCCeEEEEEEEeecC------CCceEEeeCCe------e--cc----------CCCCeEEEee-CceEEEEEecCCCCCC
Q psy2776 686 EKGTIRLMAKVKASP------APSIVWFRNNK------P--LL----------SSPKKREIFD-GENIILELKEADSETD 740 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p------~~~v~W~~~~~------~--l~----------~~~~~~~~~~-~~~~~L~i~~v~~~~D 740 (803)
.|++|+|.|.....| ...+.|+|... . +. ...|+..... ...+.|.|.++ +.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChHH
Confidence 489999999987664 24699999531 1 11 0123332211 23568999999 7999
Q ss_pred ceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 741 AGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+|.|.|.+.|..|.....+.|.|++
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999999999999999875
No 239
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.38 E-value=2.7e-06 Score=73.79 Aligned_cols=78 Identities=17% Similarity=0.316 Sum_probs=57.5
Q ss_pred cceeEEEEEEcCcC------CCeeEEeeCC-----e-ee--cCCC--------cEEEEe---cCCeEEEEEeeeccCcCe
Q psy2776 523 KSQWKVEVKYFGFP------RPEISWMKNG-----A-EI--TDSK--------ACRIFI---DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 523 g~~v~l~C~~~g~p------~~~v~W~~~g-----~-~i--~~~~--------~~~~~~---~~~~~~L~i~~v~~~dsG 577 (803)
|++++|.|.+...+ ...+.|+|.. . .+ ..+. +.++.. .....+|.|.+++.+|+|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 88999999988654 4689999862 1 11 0111 111211 234579999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEee
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.+..+.....+.|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 82 RYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999888889999999875
No 240
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.37 E-value=2.3e-06 Score=74.09 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=57.9
Q ss_pred cCCeEEEEEEEeecC------------CCceEEeeCC--e-e--cc-----------CCCCeEEEe---eCceEEEEEec
Q psy2776 686 EKGTIRLMAKVKASP------------APSIVWFRNN--K-P--LL-----------SSPKKREIF---DGENIILELKE 734 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p------------~~~v~W~~~~--~-~--l~-----------~~~~~~~~~---~~~~~~L~i~~ 734 (803)
.|++++|.|...... .+.+.|+|.. . + +. ...|+.+.. ....+.|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999987542 3589999842 1 1 10 112444433 33568899999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+ +.+|+|+|.|.+.+.+...+..+.|.|++
T Consensus 81 l-~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 L-RSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred c-ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 9 89999999999998888888888888865
No 241
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.37 E-value=2.6e-06 Score=73.96 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=57.6
Q ss_pred cCCeEEEEEEEeecC------CCceEEeeCC---e---ecc--CCCCe--------EEE---eeCceEEEEEecCCCCCC
Q psy2776 686 EKGTIRLMAKVKASP------APSIVWFRNN---K---PLL--SSPKK--------REI---FDGENIILELKEADSETD 740 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p------~~~v~W~~~~---~---~l~--~~~~~--------~~~---~~~~~~~L~i~~v~~~~D 740 (803)
.|++|+|.|.....+ .+.+.|+|.. . .+. .+... +.. .....+.|.|.++ +.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHHH
Confidence 489999999998764 4589999962 1 110 11111 111 1235688999999 7999
Q ss_pred ceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 741 AGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
+|.|.|.+.|..+.....+.|.|.+
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999999999889999998864
No 242
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.36 E-value=1.5e-06 Score=75.97 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.1
Q ss_pred ccceeEEecCCeEEEEEEEeecCCCceEEeeCCe--ecc----------------CCCCeEEEeeC-ceEEEEEecCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--PLL----------------SSPKKREIFDG-ENIILELKEADSE 738 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~--~l~----------------~~~~~~~~~~~-~~~~L~i~~v~~~ 738 (803)
.+....+.+|++++|.|.+.+ +.+.+.|||... .+. ...++....+. ..+.|.|.++ +.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~-~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA-EP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC-Ch
Confidence 344578899999999999988 778899999532 110 12345444433 5688999999 79
Q ss_pred CCceeEEEEEEccCc
Q psy2776 739 TDAGDYKVVATNELG 753 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G 753 (803)
+|+|.|.|.+.+..|
T Consensus 82 ~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 82 EDSAVYLCASSLGGG 96 (110)
T ss_pred hhCEEEEEEeeCCCC
Confidence 999999999998643
No 243
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.35 E-value=3e-06 Score=73.42 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred ecceeEEEEEEcCcC------------CCeeEEeeCC--e---ee---------cCC--CcEEEEe---cCCeEEEEEee
Q psy2776 522 VKSQWKVEVKYFGFP------------RPEISWMKNG--A---EI---------TDS--KACRIFI---DEETSTIAIYS 570 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p------------~~~v~W~~~g--~---~i---------~~~--~~~~~~~---~~~~~~L~i~~ 570 (803)
.|++++|.|.+.... .+.+.|+|.. . .+ ... .|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999987543 3589999842 1 11 111 1333322 23568999999
Q ss_pred eccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 571 VVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998877888888888865
No 244
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.34 E-value=3.1e-06 Score=72.55 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCeEEEEEEEeecCC---CceEEeeCCe--ec---------c------CCCCeEEEe---eCceEEEEEecCCCCCCcee
Q psy2776 687 KGTIRLMAKVKASPA---PSIVWFRNNK--PL---------L------SSPKKREIF---DGENIILELKEADSETDAGD 743 (803)
Q Consensus 687 g~~v~L~C~~~g~p~---~~v~W~~~~~--~l---------~------~~~~~~~~~---~~~~~~L~i~~v~~~~D~G~ 743 (803)
|++|+|.|...+... ..+.|++... .+ . ...|..... .....+|.|.++ +.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNV-RASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcC-ChhhCEE
Confidence 788999999863322 2578887541 11 1 012332221 134578999999 7999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy2776 744 YKVVATNELGSATHGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V 763 (803)
|+|.+.|.-|.....+.|+|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999998888777777776
No 245
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.29 E-value=3.2e-06 Score=73.89 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=54.0
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCee---------------ccceeEEEe----cCeeEEEEecCCCCcce
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL---------------IKGRNITYE----NNVARFTVVNCSESSEG 210 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~---------------~~~~~~~~~----~~~~~L~i~~v~~~d~G 210 (803)
.+..+.+.+|++++|.|.+.+.+...+.|++.... ....++... .....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34567888999999999999777778999985421 011222222 25678999999999999
Q ss_pred EEEEEEEcCCc
Q psy2776 211 RYTCKATNEAG 221 (803)
Q Consensus 211 ~Y~C~a~n~~g 221 (803)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997653
No 246
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.29 E-value=3e-06 Score=73.47 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=54.7
Q ss_pred eccceeEEecCCeEEEEEEEeecC-CCceEEeeCC--ee---cc---------CCCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASP-APSIVWFRNN--KP---LL---------SSPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~~--~~---l~---------~~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
..+....+.+|++|+|.|.+.+.+ ...+.|||.. .. |. ...++.....+..+.|.|.++ +.+|+
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~-~~~Ds 83 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRV-EPEDA 83 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCC-ChHHC
Confidence 344557889999999999998765 5679999853 11 10 123555544556788999999 79999
Q ss_pred eeEEEEEEcc
Q psy2776 742 GDYKVVATNE 751 (803)
Q Consensus 742 G~Y~C~a~N~ 751 (803)
|.|.|.+.|.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999999864
No 247
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.26 E-value=7.5e-06 Score=71.04 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=57.1
Q ss_pred cceeEEEEEEcCcC------CCeeEEeeCCe----e----ecC----------CCcEEEEe-cCCeEEEEEeeeccCcCe
Q psy2776 523 KSQWKVEVKYFGFP------RPEISWMKNGA----E----ITD----------SKACRIFI-DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 523 g~~v~l~C~~~g~p------~~~v~W~~~g~----~----i~~----------~~~~~~~~-~~~~~~L~i~~v~~~dsG 577 (803)
|++++|.|.+...| ...+.|+|... . +.. ..++.+.. .....+|.|.+++.+|+|
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG 81 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG 81 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence 88999999987663 35699998531 0 111 01222211 123468999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEee
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.+..+.....+.|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 82 RYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEecccceEEEEEEEEEE
Confidence 99999999999999999999865
No 248
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.25 E-value=3.4e-06 Score=73.11 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=53.7
Q ss_pred EEecCCeEEEEEEEeec-CCCceEEeeCCee-----c------------cCCCCeEEEeeC--ceEEEEEecCCCCCCce
Q psy2776 683 TVKEKGTIRLMAKVKAS-PAPSIVWFRNNKP-----L------------LSSPKKREIFDG--ENIILELKEADSETDAG 742 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~-----l------------~~~~~~~~~~~~--~~~~L~i~~v~~~~D~G 742 (803)
.+.+|++++|.|.+.+. +...+.|++.... + ....++.+..+. ..+.|.|.++ +.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v-~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSL-QPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCC-CHHHCE
Confidence 46789999999999876 6678999995321 1 122345444444 5789999999 899999
Q ss_pred eEEEEEEccCc
Q psy2776 743 DYKVVATNELG 753 (803)
Q Consensus 743 ~Y~C~a~N~~G 753 (803)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998776
No 249
>KOG0613|consensus
Probab=98.23 E-value=1.8e-05 Score=92.18 Aligned_cols=493 Identities=15% Similarity=0.118 Sum_probs=256.7
Q ss_pred CCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeee-eEEEEeccccCCeEEEEEEEEccCc
Q psy2776 45 GAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTS-TTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 45 ~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
.++..-..+...+.-+-..|..|..+++..+..|+++....+.. .|....... ..-.+.....+.....+|.+.+..+
T Consensus 141 ~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s-~~~~~l~~~~~~s~~~~a~~e~~v~~v~s~gqp~~ 219 (1205)
T KOG0613|consen 141 PPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRS-PWLKRLTQPTDDSTDTDAHYESRVRAVVSAGQPEP 219 (1205)
T ss_pred CCCCCccceeecCceecccccCCccCccceeecceEEEEeccCC-CcccccccccCCcceeccccceeEEEEEecCCCcc
Confidence 33333344455567777889998888888898888887766554 443332211 0111111112222333333322222
Q ss_pred cCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEec
Q psy2776 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVN 203 (803)
Q Consensus 124 ~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~ 203 (803)
...+... ...+.+...++.....+++...|.|.+.+...+.+.|+.+....... .-+..+..|.+
T Consensus 220 ~~~~~~~-----------g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----~~~~~t~~i~~ 284 (1205)
T KOG0613|consen 220 LERWEIL-----------GELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----HKGGNTKTIQN 284 (1205)
T ss_pred chhhhhc-----------ccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc----cCCCccccccc
Confidence 1111111 11122223344455667889999999998888888887765432222 23445788889
Q ss_pred CCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceee
Q psy2776 204 CSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (803)
...++.+.|+|...+..+.....+.-.+........+.....+-..
T Consensus 285 ~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~---------------------------------- 330 (1205)
T KOG0613|consen 285 DGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAAR---------------------------------- 330 (1205)
T ss_pred cCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccC----------------------------------
Confidence 9999999999999998887776655444433211111110000000
Q ss_pred ccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCcee-eEEeecCeeccccceeEEEEcCcee
Q psy2776 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ-VKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~-i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
++-....-..-.......+..+.+.|.. +.+.+. +.|++++.....+........+.
T Consensus 331 -------------------~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-- 389 (1205)
T KOG0613|consen 331 -------------------PPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGT-- 389 (1205)
T ss_pred -------------------CccccccccccceeccccCcceeecccccCCcCCchheeeccccccccccccccccccc--
Confidence 0000000000112223346678888887 665554 88888765554432211111110
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
.-.-.+.|..+...+.+.|.|.
T Consensus 390 ----------------------------------------------------------~ts~~~~~~~~~~~e~~~~~~~ 411 (1205)
T KOG0613|consen 390 ----------------------------------------------------------VTSHTYTIKDAGPGEGYFTRVP 411 (1205)
T ss_pred ----------------------------------------------------------ccCcchhhhhcCcccccccccc
Confidence 0011255677788889999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEe
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~ 521 (803)
|.|..|....... -.++..... ..++. +.-.......+.
T Consensus 412 a~n~~g~~~~~~~---------~~vs~~~~g---------------------------t~~~~-----~kk~~~~t~~L~ 450 (1205)
T KOG0613|consen 412 AVNKGGTEQTIAE---------STVSEEMPG---------------------------TQPPK-----FKKDVSTTDLLT 450 (1205)
T ss_pred eeccCCcccccch---------hhcccccCC---------------------------CCCcc-----cccccccccccc
Confidence 9998888777431 001111100 01110 000000111122
Q ss_pred ecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQ 597 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~ 597 (803)
.-+.+.+.|...+.+.+ .++|++++...... ......+.-.+|.+.-....|.|.|.-......+.. +....+-
T Consensus 451 ~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~--s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~ 528 (1205)
T KOG0613|consen 451 VKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDR--SVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLP 528 (1205)
T ss_pred CCcccccccCCCCccccceeEeeccCCcccccc--cccccccchhhheeeccCCCccchhhhhhhccCCCCCCccccccc
Confidence 23778888888887744 45567766544332 111122234567777778889999965554333332 2222221
Q ss_pred EeeeE--------eEeeecccc------------------------cEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 598 VLGYI--------IQQQEKNSL------------------------KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 598 V~~~p--------~~~~~~~~~------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
-.... -.......+ .|+...... + ...++-...+...|.++..+.+
T Consensus 529 ~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~-g-tt~t~~~~~p~~~~~~t~~~k~ 606 (1205)
T KOG0613|consen 529 AAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRP-G-TTETIGSILPGHEYHVTIKAKN 606 (1205)
T ss_pred ccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhhhccCCcccccCC-C-cccccccccccccceeehhhhh
Confidence 11111 000000111 122221222 2 6778888999999999999999
Q ss_pred CCCCCCCccceeeeeeeccc-CC------------CCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCe
Q psy2776 646 SVGLGPEATTELVALATHAT-LG------------SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK 711 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~-~~------------~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~ 711 (803)
..|.+.++....+....... +. .....+.++.....+....+.-....|...+.|...+.|.+...
T Consensus 607 ~~gE~~ps~~~~t~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~~e~ 685 (1205)
T KOG0613|consen 607 ELGESRPSSKSTTLKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKKKKQEK 685 (1205)
T ss_pred cccccCCCCCCccccccccccccccccCCccccccccccchhcccchhhccccccceeeeeccccCCcccccccccccc
Confidence 99999877311111111110 00 11123334444444555667777788888889999999988644
No 250
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.22 E-value=8.6e-06 Score=69.83 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=52.2
Q ss_pred cceeEEEEEEcCcCC---CeeEEeeCCe--ee---------cC----C--CcEEEEe---cCCeEEEEEeeeccCcCeEE
Q psy2776 523 KSQWKVEVKYFGFPR---PEISWMKNGA--EI---------TD----S--KACRIFI---DEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 523 g~~v~l~C~~~g~p~---~~v~W~~~g~--~i---------~~----~--~~~~~~~---~~~~~~L~i~~v~~~dsG~Y 579 (803)
|+++.|.|.+.+... ..+.|+|... .+ .. . .|..+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999864322 3678887541 11 10 0 1222211 12457899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEE
Q psy2776 580 TVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 580 ~C~a~n~~g~~s~s~~l~V 598 (803)
+|.+.|..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887888888876
No 251
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.22 E-value=7.8e-06 Score=69.82 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=53.6
Q ss_pred ceeEEEEEEcCcC---CCeeEEeeCCee---------------ecCCCcEEEEecC---CeEEEEEeeeccCcCeEEEEE
Q psy2776 524 SQWKVEVKYFGFP---RPEISWMKNGAE---------------ITDSKACRIFIDE---ETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 524 ~~v~l~C~~~g~p---~~~v~W~~~g~~---------------i~~~~~~~~~~~~---~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
++++|.|.+...+ ...+.|+|.... +...-+.++.... ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987754 347899985421 0111122222222 457999999999999999999
Q ss_pred EEc-CCCCeEEEEEEEEe
Q psy2776 583 ATN-AAGSTSLDLSLQVL 599 (803)
Q Consensus 583 a~n-~~g~~s~s~~l~V~ 599 (803)
+.+ ..|.....+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 874 67888888888873
No 252
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.22 E-value=5.8e-06 Score=70.70 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=52.2
Q ss_pred eEEecCCeEEEEEEEeecCCC--ceEEeeCCee-----cc--------------CCCCeEEEeeCceEEEEEecCCCCCC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAP--SIVWFRNNKP-----LL--------------SSPKKREIFDGENIILELKEADSETD 740 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~-----l~--------------~~~~~~~~~~~~~~~L~i~~v~~~~D 740 (803)
..+.+|+++.|.|.. .|.. .+.|+|+... |. ...|..+..+ .+|.|+++ +.+|
T Consensus 8 ~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n---gSL~I~~v-~~~D 81 (105)
T cd05774 8 PQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN---GSLLIQNV-TQKD 81 (105)
T ss_pred CcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC---CcEEEecC-Cccc
Confidence 356789999999855 4555 8999996321 10 1223333332 36999999 8999
Q ss_pred ceeEEEEEEccC-cceeeeEEEEE
Q psy2776 741 AGDYKVVATNEL-GSATHGARVTV 763 (803)
Q Consensus 741 ~G~Y~C~a~N~~-G~~~~~~~l~V 763 (803)
+|.|+|.+.|.. ......+.|.|
T Consensus 82 ~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 82 TGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CEEEEEEEEeCCccEEEEEEEEEC
Confidence 999999999987 45455555543
No 253
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.18 E-value=7.1e-06 Score=72.55 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=54.4
Q ss_pred ceeEEecCCeEEEEEEEee--cCCCceEEeeC--Ceec-----------------cCCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKA--SPAPSIVWFRN--NKPL-----------------LSSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~--~~~l-----------------~~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|++++|.|.+.+ .+.+.+.|++. |..+ ....++.+..+. ..+.|.|.++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~- 84 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL- 84 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC-
Confidence 3567889999999999987 67788999994 2111 023566666665 6789999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 79999999999975
No 254
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.18 E-value=1.6e-05 Score=69.48 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=55.7
Q ss_pred ceeEEecCCeEEEEEEEeec----CCCceEEee---------------CCeecc-CC----CCeEEEee--CceEEEEEe
Q psy2776 680 EEKTVKEKGTIRLMAKVKAS----PAPSIVWFR---------------NNKPLL-SS----PKKREIFD--GENIILELK 733 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~---------------~~~~l~-~~----~~~~~~~~--~~~~~L~i~ 733 (803)
.++.+..|+.+.|.|..... +...+.|.+ +|.... .. .|.....+ ....+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 35678889999999999764 335799933 343332 11 23332222 345789999
Q ss_pred cCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 734 EADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
++ +.+|.|.|+|.+.|.-+.......+.+
T Consensus 86 nv-~~sD~G~Y~C~v~n~p~~~~~~~~~~l 114 (116)
T cd05879 86 NL-DYTDNGTFTCDVKNPPDIVGKSSQVTL 114 (116)
T ss_pred cC-CcccCEEEEEEEEcCCCcCCceeEEEE
Confidence 99 899999999999997665544444433
No 255
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.18 E-value=1.1e-05 Score=68.89 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=52.3
Q ss_pred CeEEEEEEEeecC---CCceEEeeCCee---------------ccCCCCeEEEeeC---ceEEEEEecCCCCCCceeEEE
Q psy2776 688 GTIRLMAKVKASP---APSIVWFRNNKP---------------LLSSPKKREIFDG---ENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 688 ~~v~L~C~~~g~p---~~~v~W~~~~~~---------------l~~~~~~~~~~~~---~~~~L~i~~v~~~~D~G~Y~C 746 (803)
++|+|.|.....+ ...+.|+|.... +..+.+.+....+ ....|.|.++ +.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEEEE
Confidence 4789999997654 347999995421 0111111122222 4678999999 8999999999
Q ss_pred EEEc-cCcceeeeEEEEE
Q psy2776 747 VATN-ELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N-~~G~~~~~~~l~V 763 (803)
.+.+ ..|.....+.|+|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9985 6788888888776
No 256
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.17 E-value=7.6e-06 Score=71.51 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=51.4
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCee--c-----------------cceeEEE--e-cCeeEEEEecCCCC
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSL--I-----------------KGRNITY--E-NNVARFTVVNCSES 207 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~--~-----------------~~~~~~~--~-~~~~~L~i~~v~~~ 207 (803)
.|..+.+.+|++++|.|.+.+ +.+.+.|||.... + ...++.. . ....+|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 345677889999999999987 6678999985421 0 0112221 1 13578999999999
Q ss_pred cceEEEEEEEcCC
Q psy2776 208 SEGRYTCKATNEA 220 (803)
Q Consensus 208 d~G~Y~C~a~n~~ 220 (803)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998754
No 257
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.15 E-value=1.7e-05 Score=63.85 Aligned_cols=73 Identities=26% Similarity=0.288 Sum_probs=49.6
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEe-eC--ceEEEEEecCCCCCCceeEEEEEEccCcc-eeeeEEEEE
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIF-DG--ENIILELKEADSETDAGDYKVVATNELGS-ATHGARVTV 763 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~-~~--~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 763 (803)
+.|.|.+.|. |.+.+.|++++.++.......... .+ ..++|.|..- .++|...|+|+|.|..=. ...+..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~-~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVT-KEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECc-hhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 6899999776 888999999999997653221111 11 3466888765 566777799999997632 244444444
No 258
>PHA03376 BARF1; Provisional
Probab=98.15 E-value=3.4e-05 Score=70.31 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.9
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
.+..+|.|.+++.+|.|.|+|........
T Consensus 84 ~gnvsLvI~~l~lSDdGtY~C~fQkge~~ 112 (221)
T PHA03376 84 ANTFFLVVTAANISHDGNYLCRMKLGETE 112 (221)
T ss_pred CCeEEEEEEeeeecCCceEEEEEEcCCCc
Confidence 37788999999999999999999875533
No 259
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.14 E-value=1.2e-05 Score=69.85 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=56.0
Q ss_pred CCeEEEEEEEeecC----------CCceEEeeCC--eecc--------------CCCCeEEE---eeCceEEEEEecCCC
Q psy2776 687 KGTIRLMAKVKASP----------APSIVWFRNN--KPLL--------------SSPKKREI---FDGENIILELKEADS 737 (803)
Q Consensus 687 g~~v~L~C~~~g~p----------~~~v~W~~~~--~~l~--------------~~~~~~~~---~~~~~~~L~i~~v~~ 737 (803)
|++|+|.|.....+ ...+.|+|.. .... ...|+... .....+.|.|.++ +
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l-~ 80 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL-R 80 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC-C
Confidence 89999999997654 2569999952 1110 01232222 1235678999999 8
Q ss_pred CCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 738 ETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+|+|+|.|.+....+.....+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999877778888888854
No 260
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.14 E-value=1.6e-05 Score=69.87 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred cceeEEecCCeEEEEEEEeecC----CCceEEeeC----Cee--cc---------CCCCe----EEE--eeCceEEEEEe
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP----APSIVWFRN----NKP--LL---------SSPKK----REI--FDGENIILELK 733 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~----~~~--l~---------~~~~~----~~~--~~~~~~~L~i~ 733 (803)
+..+.+.+|++++|.|.....+ ...+.|++. +.+ +. ...++ ... .....+.|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4467889999999999986543 235999852 211 10 11122 111 12345789999
Q ss_pred cCCCCCCceeEEEEEEccCcc
Q psy2776 734 EADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
++ +.+|+|.|.|.+.|.-+.
T Consensus 85 ~v-~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QL-QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eC-ChhhCEEEEEEEEeCCCC
Confidence 99 899999999999997664
No 261
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.12 E-value=2e-05 Score=68.47 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred cceeEEEEEEcCcC----------CCeeEEeeC--Ceee------------cCC--CcEEEE---ecCCeEEEEEeeecc
Q psy2776 523 KSQWKVEVKYFGFP----------RPEISWMKN--GAEI------------TDS--KACRIF---IDEETSTIAIYSVVR 573 (803)
Q Consensus 523 g~~v~l~C~~~g~p----------~~~v~W~~~--g~~i------------~~~--~~~~~~---~~~~~~~L~i~~v~~ 573 (803)
|++++|.|.+...+ ...+.|+|. +..+ ... .|+.+. ...+...|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 88999999987654 256899985 2111 011 122221 112457899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+|+|.|.|.+..........+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998877888889998865
No 262
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.12 E-value=9.5e-06 Score=70.29 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred EEeecceeEEEEEEcCc-CCCeeEEeeCCe-----ee------------cCCCcEEEEecC--CeEEEEEeeeccCcCeE
Q psy2776 519 RLSVKSQWKVEVKYFGF-PRPEISWMKNGA-----EI------------TDSKACRIFIDE--ETSTIAIYSVVRADTST 578 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~-p~~~v~W~~~g~-----~i------------~~~~~~~~~~~~--~~~~L~i~~v~~~dsG~ 578 (803)
.+.+|++++|.|.+.+. +...+.|+|... .+ ....++.+.... ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 36789999999999876 667899998532 11 011334433333 45799999999999999
Q ss_pred EEEEEEcCCC
Q psy2776 579 YTVTATNAAG 588 (803)
Q Consensus 579 Y~C~a~n~~g 588 (803)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 263
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.12 E-value=2.1e-05 Score=68.66 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=53.9
Q ss_pred CcCeeeecCCcEEEEEEECcc----CCCeeEEEE---------------cCeecc------ceeEEEe----cCeeEEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV----PTPDIKWYK---------------DDSLIK------GRNITYE----NNVARFTV 201 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~----p~p~i~W~~---------------~~~~~~------~~~~~~~----~~~~~L~i 201 (803)
+.++.+..|+.++|.|.+... +..++.|.+ ++.... ..++.+. .+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 355677889999999999753 334799933 222211 0133332 24578999
Q ss_pred ecCCCCcceEEEEEEEcCCcCeeeEEEE
Q psy2776 202 VNCSESSEGRYTCKATNEAGTAETSCTL 229 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 229 (803)
.+++.+|+|.|+|.+.|..+.......+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~~~ 112 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVGKSSQV 112 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCCceeEE
Confidence 9999999999999999987754333333
No 264
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.11 E-value=7.9e-06 Score=69.35 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=53.4
Q ss_pred cCCeEEEEEEEee-cCCCceEEeeCCeecc--C-----------CCCe--EEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 686 EKGTIRLMAKVKA-SPAPSIVWFRNNKPLL--S-----------SPKK--REIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 686 ~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~--~-----------~~~~--~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.|++|+|.|.... .....+.|+|+...+. . ++++ +...+.....|.|.++ +.+|+|.|.|.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c~v~ 81 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRAEIN 81 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEEEEE
Confidence 5999999998754 4445799998753221 1 1111 1223455688999999 8999999999999
Q ss_pred ccCcce-eeeEEEEE
Q psy2776 750 NELGSA-THGARVTV 763 (803)
Q Consensus 750 N~~G~~-~~~~~l~V 763 (803)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988766 45555544
No 265
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.11 E-value=1.2e-05 Score=67.39 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=50.5
Q ss_pred eeEEecCCeEEEEEEEeec-CCCc--eEEeeCCeeccCCCCeEE--EeeCceEEEEEecCCCCCCce-eEEEEEEccCcc
Q psy2776 681 EKTVKEKGTIRLMAKVKAS-PAPS--IVWFRNNKPLLSSPKKRE--IFDGENIILELKEADSETDAG-DYKVVATNELGS 754 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~-p~~~--v~W~~~~~~l~~~~~~~~--~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N~~G~ 754 (803)
...+.+|+.++|+|.+.|. |.+. +.||+++..|........ .......+|.+..- .+|.| .|+|+|.+.++.
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~--r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD--REDHGANFSCETELDLRP 87 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc--hhhCCcEEEEEEEeccCc
Confidence 3456789999999999774 7776 799999999864321110 01223456777654 45555 899999998876
Q ss_pred e
Q psy2776 755 A 755 (803)
Q Consensus 755 ~ 755 (803)
.
T Consensus 88 ~ 88 (100)
T cd05755 88 E 88 (100)
T ss_pred c
Confidence 4
No 266
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.11 E-value=9.7e-06 Score=68.28 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccC------------------CCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLS------------------SPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~------------------~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
|++|+|.|.....+...+.|++++..... ..|+.+. ....|.|.++ +.+|+|.|.|.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~l-~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY---PNGSLLIQNL-TKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc---CCceEEEccC-CchhcEEEEEEE
Confidence 78999999887766668999997643211 1122222 2367999999 899999999999
Q ss_pred EccCcce-eeeEEE
Q psy2776 749 TNELGSA-THGARV 761 (803)
Q Consensus 749 ~N~~G~~-~~~~~l 761 (803)
.+..|.. ...+.|
T Consensus 77 ~~~~~~~~~~~~~l 90 (92)
T cd05741 77 ISTNGVTENAKFFL 90 (92)
T ss_pred EcCCCcEEEEEEEE
Confidence 9887443 444433
No 267
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.11 E-value=1.1e-05 Score=68.53 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=54.4
Q ss_pred ecceeEEEEEEcC-cCCCeeEEeeCCeeec--C-----------CCc--EEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 522 VKSQWKVEVKYFG-FPRPEISWMKNGAEIT--D-----------SKA--CRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 522 ~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~--~-----------~~~--~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
+|++|+|.|.... .....+.|+|....+. . ..+ .++....+...|.|.+++.+|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 5999999998764 4456789998643211 0 011 1233344568999999999999999999998
Q ss_pred CCCCe-EEEEEEEE
Q psy2776 586 AAGST-SLDLSLQV 598 (803)
Q Consensus 586 ~~g~~-s~s~~l~V 598 (803)
..|.. ...+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 87664 56666665
No 268
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.09 E-value=1.9e-05 Score=67.59 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=50.7
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--------------------eeEEEecCeeEEEEecCCCCcceEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--------------------RNITYENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
..+.+|+++.|.|.....+...+.|+|....... .+... ..+.+|.|.+++.+|+|.|+
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~-~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETI-YPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEE-eCCCcEEEecCCcccCEEEE
Confidence 3466899999999764333347999996422111 11111 12358999999999999999
Q ss_pred EEEEcCCcC-eeeEEEEE
Q psy2776 214 CKATNEAGT-AETSCTLL 230 (803)
Q Consensus 214 C~a~n~~g~-~~~s~~l~ 230 (803)
|.+.+.... .+....|.
T Consensus 87 ~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 87 LQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEeCCccEEEEEEEEE
Confidence 999998743 33344443
No 269
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.07 E-value=2.3e-05 Score=64.18 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=44.6
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCc----eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGE----NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~----~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.|.+.|. |.+.+.|+++|+++...........+. .+.|.+... ..++.+.|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~-~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVD-REDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcc-hhhCCCEEEEEEeChhcCC
Confidence 6899999775 999999999999986443222211221 334556554 3456679999999987654
No 270
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=1.6e-05 Score=67.73 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=52.0
Q ss_pred EEecCCeEEEEEEEeec--CCCceEEeeCCe--ec------------cCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 683 TVKEKGTIRLMAKVKAS--PAPSIVWFRNNK--PL------------LSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~--p~~~v~W~~~~~--~l------------~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+.+|++|+|.|...+. ....+.||+... .+ ...+++....++..+.|.|.++ +.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGA-QTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCC-ChhhCEEEEE
Confidence 46789999999999765 556799998432 11 1134666666677889999999 7999999999
Q ss_pred EEEcc
Q psy2776 747 VATNE 751 (803)
Q Consensus 747 ~a~N~ 751 (803)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 99864
No 271
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=1.8e-05 Score=68.55 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=50.8
Q ss_pred ceEEeecceeEEEEEEcCcC-CCeeEEeeCC--e---eec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-RPEISWMKNG--A---EIT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-~~~v~W~~~g--~---~i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|++++|.|.+.+.. ...+.|+|.. . .|. ...++..........|.|.++..+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 46789999999999998765 5679999743 1 111 0123444333345689999999999999999
Q ss_pred EEEcC
Q psy2776 582 TATNA 586 (803)
Q Consensus 582 ~a~n~ 586 (803)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 99754
No 272
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.04 E-value=2.1e-05 Score=66.24 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=47.4
Q ss_pred CCcEEEEEEECccCCCeeEEEEcCeeccc-------------------eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 159 QSSVTLECVVSGVPTPDIKWYKDDSLIKG-------------------RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 159 G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-------------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
|++|+|.|.....+...+.|++....... .++....+ ..|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEcC
Confidence 78999999987656668999986633211 12223333 78999999999999999999988
Q ss_pred CcC
Q psy2776 220 AGT 222 (803)
Q Consensus 220 ~g~ 222 (803)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 754
No 273
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.04 E-value=3e-05 Score=68.11 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=49.4
Q ss_pred ceEEeecceeEEEEEEcCcCC----CeeEEeeC----Cee--e---cC------CCcE--EEEe----cCCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR----PEISWMKN----GAE--I---TD------SKAC--RIFI----DEETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~----~~v~W~~~----g~~--i---~~------~~~~--~~~~----~~~~~~L~i~~v 571 (803)
.+.+.+|++++|.|.+...++ ..+.|++. +.. + .. ..++ ++.. ..+...|.|.++
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 578899999999999865432 36899742 111 1 00 1111 1111 123568999999
Q ss_pred ccCcCeEEEEEEEcCCCC
Q psy2776 572 VRADTSTYTVTATNAAGS 589 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~ 589 (803)
+.+|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999987664
No 274
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.01 E-value=2.6e-05 Score=68.94 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=52.1
Q ss_pred ceEEeecceeEEEEEEcC--cCCCeeEEeeC--Ceee------c-----------CCCcEEEEecC--CeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFG--FPRPEISWMKN--GAEI------T-----------DSKACRIFIDE--ETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g--~p~~~v~W~~~--g~~i------~-----------~~~~~~~~~~~--~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+ .+.+.+.|+|. |... . ...++.+.... ....|.|.++..
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 567888999999999987 67788999985 2211 0 12445554444 567999999999
Q ss_pred CcCeEEEEEEEc
Q psy2776 574 ADTSTYTVTATN 585 (803)
Q Consensus 574 ~dsG~Y~C~a~n 585 (803)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999864
No 275
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.00 E-value=2.1e-05 Score=66.25 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=47.9
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
...|.+|++|+|.|.... +...+.|+|+|.....-........+..+.|.|..+ +.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~-~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPV-TPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCC-CcccCEEEEEEEE
Confidence 456889999999998764 556899999887532110000111234668999999 7999999999986
No 276
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.99 E-value=6.8e-05 Score=60.32 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecC---CeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEe
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDE---ETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVL 599 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~ 599 (803)
+.|.|.+.| .|++.|+|+|++.++............ ..++|.|..-..+|...|+|.|.|..-. ...+..|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999765 577899999999999764221111111 1357777666666677999999997532 4555566664
No 277
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.98 E-value=5.8e-05 Score=61.79 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=45.8
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCc------eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGE------NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~------~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|+|.+.|. |.+.|+|++||.++..... .+..++. .+.|.|... ..+|...|+|+|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~-~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVT-REDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEec-chhCCCEEEEEEECcccCC
Confidence 6799999886 9999999999999865432 2333222 244555554 4567789999999987554
No 278
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.97 E-value=4.4e-05 Score=64.10 Aligned_cols=71 Identities=17% Similarity=0.268 Sum_probs=50.9
Q ss_pred CcCeeeecCCcEEEEEEECc-cCCCe--eEEEEcCeeccceeEEE-----ecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 151 LKDSVAGFQSSVTLECVVSG-VPTPD--IKWYKDDSLIKGRNITY-----ENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
+.+..+.+|+.++|+|.+.| .|.+. |.||+++..+....+.. .....+|.+.--+.+|.-.|+|+|.+..+
T Consensus 8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 34455679999999999985 78776 79999999887543221 22345677764444455599999998664
No 279
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.96 E-value=5.7e-05 Score=65.17 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=54.8
Q ss_pred cceeEEEEEEcCcC-------CCeeEEeeCC-----eee------------cCC--CcEEEEec---CCeEEEEEeeecc
Q psy2776 523 KSQWKVEVKYFGFP-------RPEISWMKNG-----AEI------------TDS--KACRIFID---EETSTIAIYSVVR 573 (803)
Q Consensus 523 g~~v~l~C~~~g~p-------~~~v~W~~~g-----~~i------------~~~--~~~~~~~~---~~~~~L~i~~v~~ 573 (803)
|++++|.|.+.-.| .+.+.|.|.. ..+ ..+ .|..+... .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999976333 3688998741 111 011 12222211 2467999999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+|+|.|.|.+..........+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999877788888888865
No 280
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.96 E-value=4.5e-05 Score=67.29 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=49.9
Q ss_pred cceeEEecCCeEEEEEEEeecC----CCceEEeeCCe------ecc----------CCCCe----EEEe--eCceEEEEE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP----APSIVWFRNNK------PLL----------SSPKK----REIF--DGENIILEL 732 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~~~------~l~----------~~~~~----~~~~--~~~~~~L~i 732 (803)
+....+.+|++++|.|...... ...+.|++... .+. ...++ .... ....+.|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4456788999999999986532 14599987321 110 11111 1111 123578999
Q ss_pred ecCCCCCCceeEEEEEEccCcc
Q psy2776 733 KEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.++ +.+|+|.|.|.+.|.-+.
T Consensus 85 ~~v-~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNL-QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeC-CcccCEEEEEEEEeCCCC
Confidence 999 899999999999987554
No 281
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.95 E-value=8.5e-05 Score=60.79 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=44.9
Q ss_pred eEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCe------EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 526 WKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEET------STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 526 v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~------~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
+.|+|.+.|. |.+.|+|+++|+.+..... .+...+++ +.|.|.....+|...|+|+|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 5799999875 8899999999998876432 23223222 34555555566778999999998644
No 282
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.94 E-value=2.6e-05 Score=66.09 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=49.1
Q ss_pred ecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC-eEEE--eeCc---eEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 685 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK-KREI--FDGE---NIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~-~~~~--~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..|+.+.|.|.+.|+ |. +.++|+++|.++..... .... .++. .+.|.|... ..+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~-~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPS-DWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHH-HhCCCCCEEEEEEeCCCC
Confidence 468999999999998 64 58999999999876543 1111 2222 234556554 345999999999997765
No 283
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.93 E-value=5.1e-05 Score=66.92 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=48.7
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEeeCCe------ee---------c-CCCc----EEEEe--cCCeEEEEEee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMKNGA------EI---------T-DSKA----CRIFI--DEETSTIAIYS 570 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~~g~------~i---------~-~~~~----~~~~~--~~~~~~L~i~~ 570 (803)
...+.+|+.++|.|.+.... ...+.|++... .+ . ...+ ..+.. ..+...|+|.+
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 46788999999999986542 24689976321 11 0 0111 11111 12347899999
Q ss_pred eccCcCeEEEEEEEcCCCC
Q psy2776 571 VVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~ 589 (803)
++.+|+|.|.|.+.|..+.
T Consensus 87 v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 87 LQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CCcccCEEEEEEEEeCCCC
Confidence 9999999999999987554
No 284
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.93 E-value=2.6e-05 Score=66.05 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=49.7
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+.+.|.|.+.|+ |. +.++|+++|..+..... .......+ .+.|.|......|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 458899999999998 54 68999999998876543 22222222 235666666667999999999997654
No 285
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.90 E-value=7.1e-05 Score=65.73 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=57.9
Q ss_pred cceeEEecCCeEEEEEEEe-ecCCCceEEeeCCe-----ecc--------------CCCCeEEEee--CceEEEEEecCC
Q psy2776 679 FEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNK-----PLL--------------SSPKKREIFD--GENIILELKEAD 736 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~-----~l~--------------~~~~~~~~~~--~~~~~L~i~~v~ 736 (803)
+....+.+|+++.|.|... ......+.|++... .+. ...+.....+ ...+.|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l- 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL- 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE-
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC-
Confidence 4567899999999999998 44566899999432 111 1122333333 34788999999
Q ss_pred CCCCceeEEEEEEcc-CcceeeeEEEEE
Q psy2776 737 SETDAGDYKVVATNE-LGSATHGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~-~G~~~~~~~l~V 763 (803)
+.+|+|.|.|.+... .+.....+.|+|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 899999999999987 333344444443
No 286
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.89 E-value=9.8e-05 Score=68.04 Aligned_cols=86 Identities=22% Similarity=0.167 Sum_probs=63.6
Q ss_pred ceEEeecceeEEEEEEc-CcCCCeeEEeeCCeee----------cCC--CcEEE-EecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEI----------TDS--KACRI-FIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i----------~~~--~~~~~-~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...|.+|++++|.|... +...+.+.|.|....+ .++ .|+.+ ......+.|+|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 46789999999999984 6667889999864322 222 23332 2223457999999999999999998
Q ss_pred EE-cCCC-CeEEEEEEEEeeeE
Q psy2776 583 AT-NAAG-STSLDLSLQVLGYI 602 (803)
Q Consensus 583 a~-n~~g-~~s~s~~l~V~~~p 602 (803)
.. -+.| ..+....|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 85 4566 78889999998753
No 287
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.88 E-value=9.5e-05 Score=60.48 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=42.6
Q ss_pred eEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 526 WKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 526 v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
+.|+|.+.+. |.+.++|+++|.++.... .......+ .+.|.+.....++.+.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899998765 889999999999886433 11111111 234555444455667999999998654
No 288
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.87 E-value=0.00016 Score=62.48 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=55.7
Q ss_pred cceeEEEEEEcCcC-----------CCeeEEeeC-----Ce-----ee--c--------CC--CcEEEEe---cCCeEEE
Q psy2776 523 KSQWKVEVKYFGFP-----------RPEISWMKN-----GA-----EI--T--------DS--KACRIFI---DEETSTI 566 (803)
Q Consensus 523 g~~v~l~C~~~g~p-----------~~~v~W~~~-----g~-----~i--~--------~~--~~~~~~~---~~~~~~L 566 (803)
|.+++|.|.+.-.| ...|+|.+- |. .+ . .. .|..+.. ..+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999987444 248999873 11 11 0 01 1222221 1245899
Q ss_pred EEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999988889999998865
No 289
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.86 E-value=0.00015 Score=58.07 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=52.6
Q ss_pred eeeecCCcEEEEEEECccC--CCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVP--TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
..+..|++++|.|...+.+ .+.|.|..++... ......+..+|.+.++...|+|.++|.+.-..-.....+++.|
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~---~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKS---KQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcc---ceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 3567899999999997544 4489998765331 1112235678999999999999999999855333334444444
No 290
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.85 E-value=8.8e-05 Score=63.99 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=53.5
Q ss_pred CCcEEEEEEECccC-------CCeeEEEEcC-----eecc---------------ceeEEEec-----CeeEEEEecCCC
Q psy2776 159 QSSVTLECVVSGVP-------TPDIKWYKDD-----SLIK---------------GRNITYEN-----NVARFTVVNCSE 206 (803)
Q Consensus 159 G~~~~L~C~~~g~p-------~p~i~W~~~~-----~~~~---------------~~~~~~~~-----~~~~L~i~~v~~ 206 (803)
|++++|.|.+.-.| .+.|.|.|.. .... .+++.+.. +..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999965322 3579998751 1110 11333322 467999999999
Q ss_pred CcceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 207 SSEGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
+|+|.|+|.+.......+..+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999777777788888764
No 291
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.84 E-value=6.7e-05 Score=63.16 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=50.5
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE---EEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI---TYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
|.+...+ ...|.+|++++|+|.... +...+.|+|++........ ........+.|.+++.+|+|.|+|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 3444433 355779999999998764 5557999998865432110 1122345789999999999999998763
No 292
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=5.8e-05 Score=64.34 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=49.4
Q ss_pred EeecceeEEEEEEcCc--CCCeeEEeeCCe--ee---c---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 520 LSVKSQWKVEVKYFGF--PRPEISWMKNGA--EI---T---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~--p~~~v~W~~~g~--~i---~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
+.+|++++|.|.+.+. ....+.|+|... .. . ...++..........|.|.+++.+|+|.|.|.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 5789999999998765 456799987432 11 0 013555555556678999999999999999998
Q ss_pred EcC
Q psy2776 584 TNA 586 (803)
Q Consensus 584 ~n~ 586 (803)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 753
No 293
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.84 E-value=0.00012 Score=62.53 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=51.3
Q ss_pred eeEEEEEEcCcC---CCeeEEeeCCe-----eec-----------CC--CcEEEEe--cCCeEEEEEeeeccCcCeEEEE
Q psy2776 525 QWKVEVKYFGFP---RPEISWMKNGA-----EIT-----------DS--KACRIFI--DEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 525 ~v~l~C~~~g~p---~~~v~W~~~g~-----~i~-----------~~--~~~~~~~--~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
+++|.|.....+ ...+.|+|... .+. .. .|.++.. ......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999987544 34789998421 110 00 2233322 2235789999999999999999
Q ss_pred EEEc-CCCCeEEEEEEEE
Q psy2776 582 TATN-AAGSTSLDLSLQV 598 (803)
Q Consensus 582 ~a~n-~~g~~s~s~~l~V 598 (803)
.+.+ +.|.....+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 7787778888876
No 294
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.82 E-value=9.8e-05 Score=62.93 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=51.0
Q ss_pred eEEecCCeEEEEEEEee-cCCCceEEeeCCee-----c--------cCCCCeEEEee--CceEEEEEecCCCCCCceeEE
Q psy2776 682 KTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKP-----L--------LSSPKKREIFD--GENIILELKEADSETDAGDYK 745 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~-----l--------~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
+.+.+|++++|.|.... .+...+.|++.... | ....++.+..+ ...+.|.|.++ +.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQL-RKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCC-CHHHCEEEE
Confidence 35788999999999875 35567999986421 1 12344554332 45688999999 899999999
Q ss_pred EEEEccC
Q psy2776 746 VVATNEL 752 (803)
Q Consensus 746 C~a~N~~ 752 (803)
|.+.+..
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9998754
No 295
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.81 E-value=0.00018 Score=60.87 Aligned_cols=71 Identities=23% Similarity=0.456 Sum_probs=49.7
Q ss_pred cEEEEEEECcc-CCC---eeEEEEcCe----ec---c-----------ceeEEEec---CeeEEEEecCCCCcceEEEEE
Q psy2776 161 SVTLECVVSGV-PTP---DIKWYKDDS----LI---K-----------GRNITYEN---NVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 161 ~~~L~C~~~g~-p~p---~i~W~~~~~----~~---~-----------~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
.++|.|..... |.. +|.|.+... .+ + ..++.+.+ +..+|.|.|++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68899998742 211 599987421 11 0 01223222 347899999999999999999
Q ss_pred EEc-CCcCeeeEEEEEE
Q psy2776 216 ATN-EAGTAETSCTLLV 231 (803)
Q Consensus 216 a~n-~~g~~~~s~~l~V 231 (803)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7788788888877
No 296
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.81 E-value=0.00015 Score=60.67 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=52.6
Q ss_pred ceeEEEEEEcCcCC-CeeEEeeCC----eeec-----------CC--CcEEEE-ecCCeEEEEEeeeccCcCeEEEEEE-
Q psy2776 524 SQWKVEVKYFGFPR-PEISWMKNG----AEIT-----------DS--KACRIF-IDEETSTIAIYSVVRADTSTYTVTA- 583 (803)
Q Consensus 524 ~~v~l~C~~~g~p~-~~v~W~~~g----~~i~-----------~~--~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a- 583 (803)
++++|.|.....+. ..++|.|.. ..+. .. .|..+. ......+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36899999875333 578998742 1111 11 122221 1223579999999999999999997
Q ss_pred EcCCCCeEEEEEEEEe
Q psy2776 584 TNAAGSTSLDLSLQVL 599 (803)
Q Consensus 584 ~n~~g~~s~s~~l~V~ 599 (803)
..+.|....+..|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 5779999999999873
No 297
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.81 E-value=0.00016 Score=61.16 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=50.3
Q ss_pred eeEEEEEEcCc-CCC---eeEEeeCCe----ee-----------cCC--CcEEEE-ecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 525 QWKVEVKYFGF-PRP---EISWMKNGA----EI-----------TDS--KACRIF-IDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 525 ~v~l~C~~~g~-p~~---~v~W~~~g~----~i-----------~~~--~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
.++|.|.+... |.. .|.|.+... .+ ... .|..+. ......+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57899998743 222 689987421 11 111 111111 112347899999999999999999
Q ss_pred EEc-CCCCeEEEEEEEE
Q psy2776 583 ATN-AAGSTSLDLSLQV 598 (803)
Q Consensus 583 a~n-~~g~~s~s~~l~V 598 (803)
+.| +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7888888888887
No 298
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.80 E-value=0.00016 Score=61.40 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=52.2
Q ss_pred cceeEEEEEEcCcCC-CeeEEeeCCe----eec-----------CC--CcEEEE-ecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPR-PEISWMKNGA----EIT-----------DS--KACRIF-IDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 523 g~~v~l~C~~~g~p~-~~v~W~~~g~----~i~-----------~~--~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
|++++|.|....... -.+.|+|... .+. .. .+..+. .......|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999765443 3689998431 110 00 111111 1123578999999999999999998
Q ss_pred E-cCCCCeEEEEEEEE
Q psy2776 584 T-NAAGSTSLDLSLQV 598 (803)
Q Consensus 584 ~-n~~g~~s~s~~l~V 598 (803)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 66888888888887
No 299
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.79 E-value=0.00015 Score=63.58 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred ceEEeecceeEEEEEEc-CcCCCeeEEeeCCe-----eec---C-----------CCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYF-GFPRPEISWMKNGA-----EIT---D-----------SKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~-----~i~---~-----------~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|... ......+.|++... .+. . ..+..+... ....+|.|.+++.+
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 57789999999999998 44556899998422 111 0 012222222 23578999999999
Q ss_pred cCeEEEEEEEcC-CCCeEEEEEEEE
Q psy2776 575 DTSTYTVTATNA-AGSTSLDLSLQV 598 (803)
Q Consensus 575 dsG~Y~C~a~n~-~g~~s~s~~l~V 598 (803)
|+|.|.|.+... .......+.|.|
T Consensus 90 DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 90 DSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999876 233344444443
No 300
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.78 E-value=9.5e-05 Score=65.25 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=53.5
Q ss_pred ccceeEEecCCeEEEEEEEeec-CCCceEEeeCC--ee---c---------cCCCCeEEEe--eCceEEEEEecCCCCCC
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNN--KP---L---------LSSPKKREIF--DGENIILELKEADSETD 740 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~--~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~~D 740 (803)
.+..+.+.+|++|+|.|...+. ....+.|++.. .. + ...+|+.+.. ....+.|.|.++ +.+|
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~-~~~D 83 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISAL-QLED 83 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCC-CHHH
Confidence 3446778999999999998754 45679999842 11 0 1235565543 345788999999 8999
Q ss_pred ceeEEEEEEcc
Q psy2776 741 AGDYKVVATNE 751 (803)
Q Consensus 741 ~G~Y~C~a~N~ 751 (803)
+|.|.|.+.+.
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999953
No 301
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.78 E-value=0.00018 Score=61.42 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=51.1
Q ss_pred eEEEEEEEeecC---CCceEEeeCCe-----ec---c--------C--CCCeEEEe--eCceEEEEEecCCCCCCceeEE
Q psy2776 689 TIRLMAKVKASP---APSIVWFRNNK-----PL---L--------S--SPKKREIF--DGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 689 ~v~L~C~~~g~p---~~~v~W~~~~~-----~l---~--------~--~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
+|+|.|.....+ ...+.|+|... .+ . . .+|..... ......|.|.++ +.+|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNA-VQADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecC-ccccceEEE
Confidence 688999986544 33799998321 11 0 0 12333332 223567999999 899999999
Q ss_pred EEEEc-cCcceeeeEEEEE
Q psy2776 746 VVATN-ELGSATHGARVTV 763 (803)
Q Consensus 746 C~a~N-~~G~~~~~~~l~V 763 (803)
|.+.| ..|..++.+.|+|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99999 7788777777776
No 302
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.78 E-value=0.00014 Score=67.01 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred ceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeecc----------C--CCCeE-EEeeCceEEEEEecCCCCCCceeEE
Q psy2776 680 EEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLL----------S--SPKKR-EIFDGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~----------~--~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
...+|.+|++|+|.|... +...+.++|+|.+..+. + .+|+. +...-....|.|+++ ..+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknV-t~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNV-SLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeC-ChhhCeEEE
Confidence 357889999999999984 55677899999743322 1 12333 223334578999999 799999999
Q ss_pred EEEEc-cCc-ceeeeEEEEEEeeccC
Q psy2776 746 VVATN-ELG-SATHGARVTVDVEKVG 769 (803)
Q Consensus 746 C~a~N-~~G-~~~~~~~l~V~~~~~~ 769 (803)
|...- ..| ..+..+.|.|+.+...
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~~~~~ 127 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTTDSYT 127 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEchhhc
Confidence 99875 346 7788889999765444
No 303
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.78 E-value=0.00018 Score=61.12 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=49.5
Q ss_pred CCcEEEEEEECccCC-CeeEEEEcCee----cc--------------ceeEEE---ecCeeEEEEecCCCCcceEEEEEE
Q psy2776 159 QSSVTLECVVSGVPT-PDIKWYKDDSL----IK--------------GRNITY---ENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 159 G~~~~L~C~~~g~p~-p~i~W~~~~~~----~~--------------~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
|++++|.|....... -.+.|+|.... +. ..+... .....+|+|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999999765332 25999985321 10 001111 124577999999999999999998
Q ss_pred Ec-CCcCeeeEEEEEE
Q psy2776 217 TN-EAGTAETSCTLLV 231 (803)
Q Consensus 217 ~n-~~g~~~~s~~l~V 231 (803)
.. +.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 74 5566666677776
No 304
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.75 E-value=0.00031 Score=60.72 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCeEEEEEEEeecCC-----------CceEEeeC-----Ce-----ec--cC----------CCCeEEEee---CceEEE
Q psy2776 687 KGTIRLMAKVKASPA-----------PSIVWFRN-----NK-----PL--LS----------SPKKREIFD---GENIIL 730 (803)
Q Consensus 687 g~~v~L~C~~~g~p~-----------~~v~W~~~-----~~-----~l--~~----------~~~~~~~~~---~~~~~L 730 (803)
|++++|.|...-.|. +.|.|++- |. .+ .. ..|..+..+ .....|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 688999999885542 36999873 11 11 01 112222211 245889
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|.++ +..|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v-~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKL-RASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEccc-ccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 99999 79999999999999999999999999864
No 305
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.75 E-value=0.00018 Score=57.75 Aligned_cols=77 Identities=12% Similarity=0.272 Sum_probs=55.0
Q ss_pred eEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..+..|++++|+|...+.+. +.++|.-.+...-. ....+..+|.+..+...|+|.++|.++...-.....+.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 35788999999999866444 49999865433211 11235679999999999999999999765444556666
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
+.|.+
T Consensus 83 V~Vl~ 87 (88)
T cd07694 83 IKVLA 87 (88)
T ss_pred EEEEe
Confidence 66643
No 306
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.75 E-value=0.00012 Score=63.46 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=48.0
Q ss_pred EEecCCeEEEEEEEeecC-CCceEEeeCCee-----c------c-----------CCCCeEEE--eeCceEEEEEecCCC
Q psy2776 683 TVKEKGTIRLMAKVKASP-APSIVWFRNNKP-----L------L-----------SSPKKREI--FDGENIILELKEADS 737 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p-~~~v~W~~~~~~-----l------~-----------~~~~~~~~--~~~~~~~L~i~~v~~ 737 (803)
.+.+|++++|.|.+.+.. ...+.||+...- + . ...++... .+...+.|.|.++ +
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-K 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-C
Confidence 467899999999987643 457999985321 0 0 02344332 2345678999999 8
Q ss_pred CCCceeEEEEEEcc
Q psy2776 738 ETDAGDYKVVATNE 751 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~ 751 (803)
.+|+|.|.|...+.
T Consensus 81 ~~Dsg~YyCa~~~~ 94 (107)
T cd07700 81 PEDSGTYFCMTVGS 94 (107)
T ss_pred HHHCEEEEEeEcCC
Confidence 99999999998743
No 307
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.71 E-value=0.0001 Score=63.43 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=48.4
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCe----e---cc---C------------CCCeEEEeeCceEEEEEecCCCCCC
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNK----P---LL---S------------SPKKREIFDGENIILELKEADSETD 740 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~----~---l~---~------------~~~~~~~~~~~~~~L~i~~v~~~~D 740 (803)
.+.+|++|+|.|...+.-...+.|++... . |. . ..++....+...+.|.|.++ +.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHH
Confidence 36789999999998655455799998532 1 10 0 22344434457788999999 7999
Q ss_pred ceeEEEEEEc
Q psy2776 741 AGDYKVVATN 750 (803)
Q Consensus 741 ~G~Y~C~a~N 750 (803)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999999875
No 308
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.70 E-value=0.00047 Score=59.65 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=46.6
Q ss_pred EEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEE-EeeC----ceEEEEEecCCCCCCcee-EEEEEEccCcc
Q psy2776 683 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKRE-IFDG----ENIILELKEADSETDAGD-YKVVATNELGS 754 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~-~~~~----~~~~L~i~~v~~~~D~G~-Y~C~a~N~~G~ 754 (803)
++..|+.++|.|.+.|+ |. ..++|++||+++........ ..++ ..+.|.+.. ...|.|. |+|.+......
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~--~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL--TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC--ccccccCceEEEEEeCCCC
Confidence 45578899999999886 64 58999999999864322111 1122 134465654 3455554 99999986544
Q ss_pred e
Q psy2776 755 A 755 (803)
Q Consensus 755 ~ 755 (803)
.
T Consensus 95 ~ 95 (111)
T cd05772 95 A 95 (111)
T ss_pred C
Confidence 3
No 309
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.69 E-value=0.0002 Score=58.51 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=43.7
Q ss_pred EEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEee--C---ceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 690 IRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFD--G---ENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 690 v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~--~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
++|.|.+.|+ |...++|++||.++........... + ..+.|.+..- ..+|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~-~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVD-RSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcc-cccCCCEEEEEEechhcC
Confidence 6899999885 8889999999999864432222111 1 2345666654 355677899999997654
No 310
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.68 E-value=0.00021 Score=58.31 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=43.5
Q ss_pred eEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 526 WKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 526 v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
++|+|.+.| +|++.++|+|+|..+............+ .+.|.|..-..+|...|+|.|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999987 5778999999999986543222221111 245666554556677999999987544
No 311
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.64 E-value=0.00025 Score=60.35 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=49.5
Q ss_pred eEEeecceeEEEEEEcC-cCCCeeEEeeCCe-----ee--------cCCCcEEEEec--CCeEEEEEeeeccCcCeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFG-FPRPEISWMKNGA-----EI--------TDSKACRIFID--EETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~-----~i--------~~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C 581 (803)
..+.+|++++|.|.+.. .....+.|+|... .+ ....++.+... .....|.|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35788999999999875 3456789998542 11 01134444322 345789999999999999999
Q ss_pred EEEcCC
Q psy2776 582 TATNAA 587 (803)
Q Consensus 582 ~a~n~~ 587 (803)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997754
No 312
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.61 E-value=0.00024 Score=55.58 Aligned_cols=65 Identities=29% Similarity=0.514 Sum_probs=48.2
Q ss_pred EEEEEEEeecCCCceEEeeCCeeccCCCCe----EEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 690 IRLMAKVKASPAPSIVWFRNNKPLLSSPKK----REIFDGENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 690 v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~----~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.|.+.+.+...+.|++++......... ..........|.|.++ ...|+|.|.|.+.+..+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~ 69 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSAGTV 69 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECcc-CcccCcEEEEEEecCcCcE
Confidence 468999998788899999998776543321 1112244667999999 7899999999999887443
No 313
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.60 E-value=0.00044 Score=57.93 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=51.1
Q ss_pred CeEEEEEEEeecCC-CceEEeeCC----eecc-------------CCCCeEEE-eeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 688 GTIRLMAKVKASPA-PSIVWFRNN----KPLL-------------SSPKKREI-FDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 688 ~~v~L~C~~~g~p~-~~v~W~~~~----~~l~-------------~~~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
++++|.|.....+. ..|+|.|-. ..+. ...|.... ......+|.|.++ +.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv-~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV-GFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC-CccccEEEEEEE
Confidence 46899999874333 379998842 1111 01122221 1233568999999 799999999997
Q ss_pred Ec-cCcceeeeEEEEE
Q psy2776 749 TN-ELGSATHGARVTV 763 (803)
Q Consensus 749 ~N-~~G~~~~~~~l~V 763 (803)
.+ ..|+.++++.|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 65 7899999888887
No 314
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.59 E-value=0.00024 Score=62.63 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=49.8
Q ss_pred cCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCe--e---c----------cceeEEEe----cCeeEEEEecCCCCcc
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDS--L---I----------KGRNITYE----NNVARFTVVNCSESSE 209 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~--~---~----------~~~~~~~~----~~~~~L~i~~v~~~d~ 209 (803)
.+..+.+.+|++++|.|..... ....+.|+|... . + ...++... .+..+|+|.+++.+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3456778899999999998753 445699998431 1 0 01233322 2457899999999999
Q ss_pred eEEEEEEEcC
Q psy2776 210 GRYTCKATNE 219 (803)
Q Consensus 210 G~Y~C~a~n~ 219 (803)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999853
No 315
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.55 E-value=0.00063 Score=58.87 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=51.1
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC------eEEEEEee
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE------TSTIAIYS 570 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~------~~~L~i~~ 570 (803)
|..+|..|.+... ...+..|+.++|.|.+.|+ |. ..++|+|||+.+..... ......+ .+.|.+..
T Consensus 2 v~~~P~~p~i~~~-----~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~ 75 (111)
T cd05772 2 VRAKPSVPVVSGP-----SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL 75 (111)
T ss_pred cccCCCCcEeCCc-----hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC
Confidence 3455655544321 2334568889999999886 53 58999999999865322 1111111 23444443
Q ss_pred eccCcCe-EEEEEEEcCCCC
Q psy2776 571 VVRADTS-TYTVTATNAAGS 589 (803)
Q Consensus 571 v~~~dsG-~Y~C~a~n~~g~ 589 (803)
...|.| .|+|.+.+....
T Consensus 76 -~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 76 -TEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred -ccccccCceEEEEEeCCCC
Confidence 445545 599999987543
No 316
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.52 E-value=0.00054 Score=60.66 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=49.6
Q ss_pred cceeEEecCCeEEEEEEEeecC------CCceEEeeCCe------ecc-----------CCCCeEEE--eeCceEEEEEe
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASP------APSIVWFRNNK------PLL-----------SSPKKREI--FDGENIILELK 733 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p------~~~v~W~~~~~------~l~-----------~~~~~~~~--~~~~~~~L~i~ 733 (803)
|..+.+.+|+.|+|.|...... ...+.||+... ++. ..+|+... .....+.|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4457788999999999875221 24589998532 110 11244432 23556889999
Q ss_pred cCCCCCCceeEEEEEEcc
Q psy2776 734 EADSETDAGDYKVVATNE 751 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~ 751 (803)
++ +.+|+|.|.|.+...
T Consensus 86 ~l-~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DA-QPEDSGKYFFRVELG 102 (119)
T ss_pred cC-ChhhCeEEEEEEEcC
Confidence 99 899999999998763
No 317
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.51 E-value=0.00059 Score=57.32 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCeEEEEEEEeec-CCC-ceEEeeCCeeccCCC---CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 687 KGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSP---KKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 687 g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|+.++|.|.+.|+ |.. .++|+++|..+..+. ......++.........+ ...+.+.|+|.+.+..-.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v-~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV-PPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE-CCCCCCEEEEEEEeCCCC
Confidence 7789999999997 554 899999996443222 222122333323333333 456889999999986543
No 318
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.48 E-value=0.00036 Score=60.07 Aligned_cols=66 Identities=8% Similarity=0.150 Sum_probs=46.4
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeCCee-------e---cC------------CCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAE-------I---TD------------SKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~g~~-------i---~~------------~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
+.+|++++|.|.+.......+.|+|.... | .. ..++..........|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57799999999986654567999985321 1 00 12233323345578999999999999
Q ss_pred EEEEEEEc
Q psy2776 578 TYTVTATN 585 (803)
Q Consensus 578 ~Y~C~a~n 585 (803)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998864
No 319
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.47 E-value=0.00033 Score=60.67 Aligned_cols=64 Identities=16% Similarity=0.366 Sum_probs=44.2
Q ss_pred eeecCCcEEEEEEECcc-CCCeeEEEEcCee---c--------c------------ceeEEE--e--cCeeEEEEecCCC
Q psy2776 155 VAGFQSSVTLECVVSGV-PTPDIKWYKDDSL---I--------K------------GRNITY--E--NNVARFTVVNCSE 206 (803)
Q Consensus 155 ~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~---~--------~------------~~~~~~--~--~~~~~L~i~~v~~ 206 (803)
.+.+|++++|.|...+. ....+.||+.... . . ..++.. . .....|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 3346999984431 0 0 111211 1 2345799999999
Q ss_pred CcceEEEEEEEc
Q psy2776 207 SSEGRYTCKATN 218 (803)
Q Consensus 207 ~d~G~Y~C~a~n 218 (803)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998763
No 320
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.47 E-value=0.00049 Score=53.76 Aligned_cols=63 Identities=33% Similarity=0.472 Sum_probs=46.8
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcE----EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKAC----RIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~----~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
+.|.|.+.+.+...+.|++++......... ..........|.|.++...|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 468999998777899999988765543211 111222357899999999999999999988763
No 321
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.37 E-value=0.00069 Score=59.66 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=49.5
Q ss_pred ceeEEecCCeEEEEEEEeecC--CCceEEeeCC---ee--c---c-----------CCCCeEEEeeC--ceEEEEEecCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASP--APSIVWFRNN---KP--L---L-----------SSPKKREIFDG--ENIILELKEAD 736 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~---~~--l---~-----------~~~~~~~~~~~--~~~~L~i~~v~ 736 (803)
....+.+|++|+|.|...+.- ...+.||+.. .+ | . ..+++....+. ..+.|.|.++
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~- 83 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL- 83 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC-
Confidence 356788999999999986543 4569999842 22 1 0 12345444443 3568999999
Q ss_pred CCCCceeEEEEEEc
Q psy2776 737 SETDAGDYKVVATN 750 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N 750 (803)
+.+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 89999999999875
No 322
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.35 E-value=0.00076 Score=59.70 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=48.0
Q ss_pred CcCeeeecCCcEEEEEEECccC------CCeeEEEEcCee------c---c---------ceeEEE----ecCeeEEEEe
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP------TPDIKWYKDDSL------I---K---------GRNITY----ENNVARFTVV 202 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p------~p~i~W~~~~~~------~---~---------~~~~~~----~~~~~~L~i~ 202 (803)
|..+.+.+|+.++|.|.....+ ...+.|++.... + . ..++.. ..+..+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556788999999999875321 235899985421 0 0 012333 2345789999
Q ss_pred cCCCCcceEEEEEEEcC
Q psy2776 203 NCSESSEGRYTCKATNE 219 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~ 219 (803)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 323
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.35 E-value=0.0011 Score=55.33 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=43.8
Q ss_pred CCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeE-EEeeCc----eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 687 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKR-EIFDGE----NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 687 g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
|+.+.|+|.+ .|.|.|.+.|+.++..+....... ...++. .++|.+..- ..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~-~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT-REDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT-GGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC-hHHCCeEEEEEEECCccCC
Confidence 7899999976 567999999999998872111111 111111 345666654 3456677999999986543
No 324
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.30 E-value=0.02 Score=59.43 Aligned_cols=82 Identities=12% Similarity=0.247 Sum_probs=55.2
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|.|.+++...+|.|+=...+..+...... .+.+...-
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~----------------------------------------~VtV~~yr 220 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGT----------------------------------------WTRVRMFR 220 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeee----------------------------------------EEEEEEec
Confidence 45699999999999999998776654333211 23333333
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeecC
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEITD 551 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~~ 551 (803)
+|.... ....+.+|+...-+|.+..+ |+ ..+.|++||.++..
T Consensus 221 ~Psvsv--------~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 221 RPSLSI--------RPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred CCcccc--------cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 443211 12346789999999998765 44 36889999998864
No 325
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.29 E-value=0.0021 Score=53.87 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred ceeEEEEEEcCc-CCCeeEEeeCCe----ee-----------cCC--CcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 524 SQWKVEVKYFGF-PRPEISWMKNGA----EI-----------TDS--KACRIFI-DEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 524 ~~v~l~C~~~g~-p~~~v~W~~~g~----~i-----------~~~--~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
++++|.|..... ....+.|.|... .+ ... .|..... .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 368899997642 235788988421 11 111 1222211 1234789999999999999999996
Q ss_pred c-CCCCeEEEEEE
Q psy2776 585 N-AAGSTSLDLSL 596 (803)
Q Consensus 585 n-~~g~~s~s~~l 596 (803)
+ +.|...+.+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 57777776665
No 326
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.16 E-value=0.055 Score=55.90 Aligned_cols=217 Identities=12% Similarity=0.146 Sum_probs=112.8
Q ss_pred eEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEEC
Q psy2776 90 VWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS 169 (803)
Q Consensus 90 ~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~ 169 (803)
.|.......-.+.|.++...++|.|++...+............+.+. .++|.+...+. .+.+|+...=.|.+.
T Consensus 198 i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~-----~RPPsVsV~a~--PVL~Ge~YkAtC~vA 270 (490)
T PHA03271 198 IWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVC-----QRPASVDVLAP--PVLSGENYKASCIVR 270 (490)
T ss_pred EeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEE-----ecCCCccccCC--ccccCCCceEEEEee
Confidence 44444445678999999999999887665554333222222222222 45665555433 367899999999998
Q ss_pred cc-CCC--eeEEEEcCeecccee---EEE---ec-----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeee
Q psy2776 170 GV-PTP--DIKWYKDDSLIKGRN---ITY---EN-----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKE 235 (803)
Q Consensus 170 g~-p~p--~i~W~~~~~~~~~~~---~~~---~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~ 235 (803)
.+ |+- .+.|+.||..+.... ... ++ ..++|.+.+...+.-=..+|.+.-..+....+. .-...|
T Consensus 271 nYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP 348 (490)
T PHA03271 271 HFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIP 348 (490)
T ss_pred eecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCC
Confidence 74 333 499999998775322 111 11 123444444333333478999987655333322 111111
Q ss_pred -cccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce---eeeeeccCCCcccccccc
Q psy2776 236 -IKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA---WFWWFESKSTPAVEFLSK 311 (803)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 311 (803)
+-..+...+.. +.|+-.|.+.=.+..-.++|+.+.......+. ....+..+ +....+-.
T Consensus 349 ~VY~~P~ISv~F---------------edG~AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~er-PGlVNLrS- 411 (490)
T PHA03271 349 TVYHHPRISLAF---------------KDGYAICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTI-DRHRNLIS- 411 (490)
T ss_pred ccccCCeEEEEE---------------eCCEEEEeccccCCCcEEEEEecCCCCCCcccccccccccCCC-CCceeeec-
Confidence 11122222222 23445555554444557788777665433211 11111111 11111111
Q ss_pred CCceeeeccccceeEEEEe-cCCc
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~ 334 (803)
.......++.+..+|++ |.|.
T Consensus 412 --~lPlSd~dgpveYTCrL~GYP~ 433 (490)
T PHA03271 412 --RIPVQDNWQKTKYTCRLIGYPF 433 (490)
T ss_pred --cCCchhcCCceeEEEEEeecCC
Confidence 11122235779999999 8774
No 327
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.15 E-value=0.0038 Score=52.33 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=44.5
Q ss_pred ecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCC---CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 685 KEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSP---KKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~---~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
..|+.++|.|.+.|+ |.. .+.|++||.++..+. ......++.........+ ...+...|+|.+.-....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~-~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET-TPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE-cCCCCCEEEEEEEeCCCC
Confidence 358899999999996 655 789999999876541 111112233333233333 345677899999976544
No 328
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.15 E-value=0.0027 Score=52.82 Aligned_cols=64 Identities=31% Similarity=0.530 Sum_probs=44.3
Q ss_pred CCcEEEEEEEC-ccCCCeeEEEEcCeecccee--EEEe--c----CeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 159 QSSVTLECVVS-GVPTPDIKWYKDDSLIKGRN--ITYE--N----NVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 159 G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~--~~~~--~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
|+.+.|.|.+. ++|+|.|+|+.++..+.... .... + ....|.+..-..++...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999876 69999999999998772211 1111 1 1246777655556777899999987643
No 329
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.14 E-value=0.0028 Score=52.95 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=40.6
Q ss_pred ecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCce---EEEEEecCCCCCCceeEEEEEEcc
Q psy2776 685 KEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGEN---IILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..|+.++|.|.+.|+ |. ..++|.+||.++..+.. .....|+.. ..|.+. ..+...|+|.+.-.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~----~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT----PEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE----CCCCCeEEEEEEeC
Confidence 346678999999996 64 47899999998764321 111223332 334443 34566899999864
No 330
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.13 E-value=0.0021 Score=51.47 Aligned_cols=62 Identities=21% Similarity=0.407 Sum_probs=40.5
Q ss_pred eEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 526 WKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 526 v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
++|.|.+.|+ |+ ..++|+|+|+.+..+.. .....+.+ .+.|.|.....++...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999987 44 58999999987544321 11111112 2355555555567789999998764
No 331
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.13 E-value=0.0046 Score=51.88 Aligned_cols=67 Identities=18% Similarity=0.402 Sum_probs=42.0
Q ss_pred cceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCc-EEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKA-CRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~-~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.++|.|.+.|+ |+. .++|+++|..+..+.. .....++++ ..-....+...+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 6789999999996 443 8899999964433211 122222222 12223344455889999999987543
No 332
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=97.13 E-value=0.0035 Score=51.43 Aligned_cols=80 Identities=38% Similarity=0.733 Sum_probs=63.0
Q ss_pred CCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee--eeeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 46 APDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 46 ~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
+|..+.+......++.|+|..|. .++..+..|.++.........|..... ....+.|.+|.+...|.|+.++.+..|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 34445566678999999999987 677899999999887666534444443 456899999999999999999999888
Q ss_pred cCC
Q psy2776 124 TGP 126 (803)
Q Consensus 124 ~~~ 126 (803)
.+.
T Consensus 81 ~g~ 83 (85)
T PF00041_consen 81 EGP 83 (85)
T ss_dssp EEE
T ss_pred CcC
Confidence 654
No 333
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.07 E-value=0.003 Score=50.54 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=40.3
Q ss_pred eEEEEEEEeec-CC-CceEEeeCCeeccCCCCe-EEE--eeCc---eEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 689 TIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK-REI--FDGE---NIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 689 ~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~-~~~--~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++|.|.+.|+ |. ..+.|++||.++..+... ... .++. .+.|.|... ..++...|+|.|....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~-~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAS-TWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccc-cCCCCCEEEEEEEEcC
Confidence 36899999997 55 589999999975433211 111 1222 234666554 3456688999998653
No 334
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.04 E-value=0.002 Score=54.88 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.0
Q ss_pred eccccceeEEEEe-c-CC-ceeeEEeecCeeccc
Q psy2776 318 VPHLGDATFQVEL-S-SP-DIQVKWLKKGKEIKE 348 (803)
Q Consensus 318 ~~~g~~~~l~C~~-~-~p-~~~i~W~~~g~~l~~ 348 (803)
...++.++|.|.+ + .| ..++.|++||+++..
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSS 47 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 3357789999999 4 55 789999999999864
No 335
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.01 E-value=0.0045 Score=51.88 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=46.3
Q ss_pred CeEEEEEEEeec-CCCceEEeeCCe----ecc-----------C--CCCeEEEe-eCceEEEEEecCCCCCCceeEEEEE
Q psy2776 688 GTIRLMAKVKAS-PAPSIVWFRNNK----PLL-----------S--SPKKREIF-DGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 688 ~~v~L~C~~~g~-p~~~v~W~~~~~----~l~-----------~--~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
++++|.|..... ....|+|.|... .+. . ..|..... .....+|.|.++ +.+|.|.|+|..
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nv-t~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNA-TEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCC-CcccCEEEEEEE
Confidence 468899988532 334688988422 111 0 11222211 123478999999 899999999999
Q ss_pred Ecc-CcceeeeEEE
Q psy2776 749 TNE-LGSATHGARV 761 (803)
Q Consensus 749 ~N~-~G~~~~~~~l 761 (803)
.+- .|..++.+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 974 6776665544
No 336
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.97 E-value=0.002 Score=52.40 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=40.7
Q ss_pred eEEEEEEEeecCCC--ceEEeeCCe--e---c-------------cCCCCeEEEee--CceEEEEEecCCCCCCceeEEE
Q psy2776 689 TIRLMAKVKASPAP--SIVWFRNNK--P---L-------------LSSPKKREIFD--GENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 689 ~v~L~C~~~g~p~~--~v~W~~~~~--~---l-------------~~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
++.|.|.+.....+ .+.|++... . + ....|+..... .....|.|.++ +.+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEEE
Confidence 47899998765543 789988541 1 1 01234444444 56788999999 8999999999
Q ss_pred E
Q psy2776 747 V 747 (803)
Q Consensus 747 ~ 747 (803)
.
T Consensus 80 ~ 80 (81)
T smart00406 80 A 80 (81)
T ss_pred c
Confidence 6
No 337
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.93 E-value=0.0027 Score=51.60 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred eeEEEEEEcCcCCC--eeEEeeCCe--e---ec-------------CCCcEEEEec--CCeEEEEEeeeccCcCeEEEEE
Q psy2776 525 QWKVEVKYFGFPRP--EISWMKNGA--E---IT-------------DSKACRIFID--EETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 525 ~v~l~C~~~g~p~~--~v~W~~~g~--~---i~-------------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
++.|.|.+.....+ .+.|++... . +. ...++.+... .+...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 46899998765543 788987431 0 10 0133443333 4557899999999999999996
Q ss_pred E
Q psy2776 583 A 583 (803)
Q Consensus 583 a 583 (803)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 338
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.92 E-value=0.0071 Score=50.37 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=42.4
Q ss_pred EecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe-EEE--eeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 684 VKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK-REI--FDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~-~~~--~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+..|+..+|.|.+.|+ |. ..++|++||.++. +... ... .++.........+ ...+...|+|.+.-.
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~-~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEF-TPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEE-CCCCCCeEEEEEEEC
Confidence 3457778999999996 44 4789999999986 3221 111 2333333333333 456778899999864
No 339
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.87 E-value=0.0035 Score=55.16 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=47.4
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---e---c--------C---CCcEEEEecC--CeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---I---T--------D---SKACRIFIDE--ETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i---~--------~---~~~~~~~~~~--~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|...... ...+.|+|.. +. | . . ..++...... ....|.|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 46788999999999976543 4568999742 11 1 0 0 1234443322 235799999999
Q ss_pred CcCeEEEEEEEc
Q psy2776 574 ADTSTYTVTATN 585 (803)
Q Consensus 574 ~dsG~Y~C~a~n 585 (803)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998865
No 340
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.86 E-value=0.0031 Score=53.67 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=43.7
Q ss_pred EEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC---eEEEeeCce---EEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 683 TVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK---KREIFDGEN---IILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~---~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
....++.++|.|.+.|+ | ...|.|++||.++..+.. .....++.. +.|.+..- .-++...|+|.+....-
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~-~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKS-DWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHH-HhCCCCeEEEEEEecCC
Confidence 34457889999999986 6 457999999999853311 111113332 33444432 12346789999987543
No 341
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.84 E-value=0.0095 Score=49.94 Aligned_cols=69 Identities=19% Similarity=0.383 Sum_probs=43.5
Q ss_pred eecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCc-EEEEecCCe--EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKA-CRIFIDEET--STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~-~~~~~~~~~--~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..|+.++|.|.+.|+ |.. .++|+++|+.+..+.. ......+++ .....-.+...+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 457889999999995 443 7899999998776411 111222221 11122234445667999999987544
No 342
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.80 E-value=0.0091 Score=48.85 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=44.8
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEE---eeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~---~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.++.++|.|.+.|+ |.. .|.|+++|..+......... .++.........+ ...+...|+|.+......
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTV-TWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEE-ETTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEe-cCCCCCEEEEEEEECCCC
Confidence 38999999999986 654 79999999988655432222 2333333333333 245666899999876543
No 343
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.78 E-value=0.0089 Score=50.12 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=43.8
Q ss_pred CCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 687 KGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 687 g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.....+.|.+ .|.|.+.|.|+++..... ........++. .++|.+... ..+|.-.|+|+|.|..-.....+.++
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~-~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPS-REANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecC-HHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3467899999 577999999999711100 01111111222 356767664 44555669999999875544333333
No 344
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.74 E-value=0.0065 Score=50.84 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=42.5
Q ss_pred cCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC---eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 686 EKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK---KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++.++|.|.+.|+ |. ..|.|++||..+..+.. .....++. .+.|.+..- .-.+...|+|.+........
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~-~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQE-DWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchH-HhcCCCeEEEEEEECCeeee
Confidence 35678999999996 65 47999999998733211 11111222 223444432 12356789999998665433
No 345
>KOG4597|consensus
Probab=96.72 E-value=0.0033 Score=65.58 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=84.0
Q ss_pred EEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee---CCee--
Q psy2776 638 YFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR---NNKP-- 712 (803)
Q Consensus 638 ~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~---~~~~-- 712 (803)
.++|...-..+..++.....-...++..-+ .|.+..-+....+..++++.++|-+.|.|.+.|.|.+ |+..
T Consensus 166 iv~C~~~~t~~~~~~~~cettm~ptpe~e~----~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv 241 (560)
T KOG4597|consen 166 IVYCIHGKTWPRVSPDPCETTMAPTPEFEP----SCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVV 241 (560)
T ss_pred eEEEeccccCCCCCCCccccccCCCCCCCC----CcccccCcchhhcccchhhcccccccCCcCceeeeehhhcccccee
Confidence 355666666666555544333332222111 1455566667788899999999999999999999976 3332
Q ss_pred ccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 713 LLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 713 l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+..+..+..-...+...|.|.+. ...|+|.|+|.|.|.+|...+.+.+.+.
T Consensus 242 ~~~nq~~e~p~vtstcql~ic~e-wq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 242 MRPNQTVENPVVTSTCQLVICNE-WQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred ecCccccCCcceeeeeeEEEcch-hhcCCCceeeccccccceeeccceeeee
Confidence 22222222223345678999999 6899999999999999999999999874
No 346
>KOG1480|consensus
Probab=96.72 E-value=0.00075 Score=74.38 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=65.1
Q ss_pred cccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccc
Q psy2776 309 LSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
+.+.|.-+.+..+..+.+.|+. +.|...++|+|++..+..........+. .+++..+...|.|.|+|.+.|..+.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC---Cccccchhhhhcccceeeeehhhcc
Confidence 3344555667778889999998 7999999999999888876555555444 5999999999999999999997764
Q ss_pred e-----eeeeeecCC
Q psy2776 387 S-----KLKWLDFGS 396 (803)
Q Consensus 387 ~-----~~~~~~~~~ 396 (803)
. .+.|+..++
T Consensus 209 r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 209 RKSDPATVQVYVNGG 223 (909)
T ss_pred ccccceEEEEEEcCc
Confidence 3 355554443
No 347
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.71 E-value=0.0044 Score=46.70 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=36.4
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
.-|.+|+|+|-..+. .+.|.+++..+... +..+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCCC
Confidence 348899999964422 38999999655542 2344555555 8899999999654
No 348
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.70 E-value=0.0026 Score=47.94 Aligned_cols=51 Identities=39% Similarity=0.688 Sum_probs=37.4
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
.|.+|+|+|...+. .+.|++++..+... ...+.+.+.. +++|.|+|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~-------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGS-------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCC-------CceEEeeccC-CCCceEEEEeCCC
Confidence 58999999987532 39999998655432 2345566666 9999999999653
No 349
>KOG1480|consensus
Probab=96.69 E-value=0.0006 Score=75.09 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=67.7
Q ss_pred eeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.|...+.-..|.++...+|.|.. .+.|...++|++|+..+.++.+.....+.. |+|..+ ...|.|+|+|+|.|-+
T Consensus 131 ~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~---li~~~a-rlsd~~nytc~a~ni~ 206 (909)
T KOG1480|consen 131 HFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHN---LIISQA-RLSDSGNYTCEATNIV 206 (909)
T ss_pred hhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCC---ccccch-hhhhcccceeeeehhh
Confidence 35555666788899999999976 678999999999999998866665555555 888888 6899999999999988
Q ss_pred cce-eeeEEEEE
Q psy2776 753 GSA-THGARVTV 763 (803)
Q Consensus 753 G~~-~~~~~l~V 763 (803)
+.. +..+.+.|
T Consensus 207 ~~r~~~~~~v~v 218 (909)
T KOG1480|consen 207 AKRKSDPATVQV 218 (909)
T ss_pred ccccccceEEEE
Confidence 765 33444443
No 350
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.64 E-value=0.18 Score=53.37 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=53.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++..++|.|.=++.+......... ..+.+.+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~---------------------------------------~~VtV~~y 327 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINE---------------------------------------HHITVMSY 327 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeee---------------------------------------eEEEEEEe
Confidence 345699999999999999866544322111100 13333444
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeecC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEITD 551 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~~ 551 (803)
-+|... +....+.+|+...-.|.+..+ |+ ..+.|++||.++..
T Consensus 328 r~PsVs--------V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 328 KRPNIT--------VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cCCCcc--------ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 444321 113446789999999998765 44 36889999988875
No 351
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.59 E-value=0.23 Score=51.57 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.3
Q ss_pred eEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeecCC
Q psy2776 518 QRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEITDS 552 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~~~ 552 (803)
..+..|++..-+|.+..+ |+ ..+.|++||..+...
T Consensus 255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 346789999999998765 44 368899999887654
No 352
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.58 E-value=0.23 Score=52.52 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=51.8
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|+|..++...+|.|+=...+..+...... .+.+...-+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~----------------------------------------~VtV~~yr~ 237 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNST----------------------------------------SVTVSTYNA 237 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeee----------------------------------------EEEEEEecC
Confidence 4599999999999999866545433222210 122222333
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCc-CC--CeeEEeeCCeeec
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR--PEISWMKNGAEIT 550 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~--~~v~W~~~g~~i~ 550 (803)
|... +....+.+|+...-.|.+..+ |+ ..+.|++||.++.
T Consensus 238 Psvs--------v~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 238 PLVD--------LSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred Cccc--------ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 3321 113446789999999998765 44 3688999999887
No 353
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.54 E-value=0.0074 Score=50.74 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=40.7
Q ss_pred EEeecceeEEEEEEcCc--CC-CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 519 RLSVKSQWKVEVKYFGF--PR-PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~--p~-~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.+..|+.++|+|.+.|+ |+ ..++|+|+|...............++ +.|.+..-...+.-.|+|.+.+....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 35568899999999998 54 47899998743321100000111111 23434332222344899999987543
No 354
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.53 E-value=0.023 Score=47.39 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=42.6
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCe-E-EEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEET-S-TIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~-~-~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
..|....|.|.+.|+ |+ ..++|+|||+.+. +.. ..+...+++ . ......+...+...|+|.+.....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 346667999999996 43 4779999999887 421 122222222 1 122234456777789999998643
No 355
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.52 E-value=0.024 Score=46.38 Aligned_cols=64 Identities=20% Similarity=0.370 Sum_probs=43.5
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEe--cCCe----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFI--DEET----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~--~~~~----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
++.+.|.|.+.++ |. ..|.|+++|..+.......... .++. +.|.+. ..+...|+|.+.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 8899999999986 43 3789999999987653322222 2222 234444 56667999999987544
No 356
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.41 E-value=0.27 Score=50.61 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=56.3
Q ss_pred eeEEecCCeEEEEEEEee--cCC-CceEEeeCCeecc-----------------CCCCeEEEe------eCceEEEEEec
Q psy2776 681 EKTVKEKGTIRLMAKVKA--SPA-PSIVWFRNNKPLL-----------------SSPKKREIF------DGENIILELKE 734 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g--~p~-~~v~W~~~~~~l~-----------------~~~~~~~~~------~~~~~~L~i~~ 734 (803)
+..+..|.+|.|.|...- .-. ....|+--|-++. .+..+.+.. +-..++|.|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 466777999999998753 322 3688987654432 122233332 12357899999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+ +.+.+|=|+|+|.-..-+..+.--|.|
T Consensus 353 a-~I~N~GCY~~~a~~g~~~~ec~~Cl~V 380 (500)
T PHA02914 353 A-HINNAGCYEAQAFMGKFKEECRHCFKV 380 (500)
T ss_pred E-EEEcCCceEEEEecCcchhhhhhheEe
Confidence 9 799999999999987666666655665
No 357
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.41 E-value=0.022 Score=47.78 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=42.8
Q ss_pred CcEEEEEEEC-ccCCCeeEEEEcCeeccceeE-EEecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 160 SSVTLECVVS-GVPTPDIKWYKDDSLIKGRNI-TYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 160 ~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
....+.|.+. |+|.+.|+|+++......... ...++ ...|.+..-..+|...|+|++.|..-.....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4678899985 799999999997211111111 11111 3467776666677778999999987544333
No 358
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.40 E-value=0.0069 Score=45.96 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=37.2
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
.+.|.|+|.. ..+|.|++ |..+... .+.+|.+..+..+-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV---------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc---------cccEEeccCcccCCCcceEecCcc
Confidence 4578999965 25699999 6544431 146788888888899999999977
No 359
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.39 E-value=0.024 Score=47.46 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=42.8
Q ss_pred CeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 688 GTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 688 ~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
..+.+.|.+. |.|.+.++|+++...... .......++. .++|.+..- ..+|...|+|+|+|..-.....+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~-~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPT-PEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecC-HHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4678999875 669999999997211100 0111112222 345666554 4456667999999987544433333
No 360
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.39 E-value=0.025 Score=47.28 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=41.0
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.|+..+|.|.+.|+ |. ..++|.+||..+..+.. ..+...+++ +.|.+ ...+...|+|.+.....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence 35667999999996 43 57899999998865421 111222221 23444 34566699999988643
No 361
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.37 E-value=0.013 Score=48.97 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=41.9
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCC-cEEEE-ecCC----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSK-ACRIF-IDEE----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~-~~~~~-~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.++.+.|.|.+.|+ |. ..++|+++|..+..+. ..... ..++ .+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35668999999995 54 5789999999874331 11111 1111 134444433334567999999987544
No 362
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.37 E-value=0.0084 Score=51.14 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=41.4
Q ss_pred EecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe--EEEe----eCc---eEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 684 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK--REIF----DGE---NIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~--~~~~----~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+..|+.++|.|.+.|+ |.. .+.|++||.++...... .... ++. .+.|.|..- .-.+...|+|++.-..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~-~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAE-DWNAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHH-HhcCCCcEEEEeEeCC
Confidence 4457899999999997 443 68999999987543211 1111 122 233444332 1134567999998643
No 363
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.35 E-value=0.017 Score=48.37 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=44.7
Q ss_pred CcEEEEEEEC-ccCCCeeEEEEcCeeccceeEEE--ecC---eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEE
Q psy2776 160 SSVTLECVVS-GVPTPDIKWYKDDSLIKGRNITY--ENN---VARFTVVNCSESSEGRYTCKATNEAGTAETSCTL 229 (803)
Q Consensus 160 ~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l 229 (803)
..+.+.|.+. |+|.+.|.|+++........... ++. ...|.+..-..+|...|+|++.|..-.......+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4678999877 79999999998732111111111 111 3467776666677778999999987554444433
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.34 E-value=0.014 Score=49.00 Aligned_cols=63 Identities=13% Similarity=0.274 Sum_probs=38.6
Q ss_pred EecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe-EEEeeCce----EEEEEecCCCCC-CceeEEEEEEc
Q psy2776 684 VKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK-REIFDGEN----IILELKEADSET-DAGDYKVVATN 750 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~-~~~~~~~~----~~L~i~~v~~~~-D~G~Y~C~a~N 750 (803)
...++.++|.|.+.|+ |.. .+.|++||..+..+... ....+++. +.|.|. .. ....|+|.+.-
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt----~~~~~~~ysC~V~H 83 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT----KDSLGKKFRCIYKH 83 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC----chhCCCeEEEEEEE
Confidence 3346789999999996 543 78999999987543221 11122222 223343 33 33449999986
No 365
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.28 E-value=0.27 Score=52.12 Aligned_cols=207 Identities=14% Similarity=0.079 Sum_probs=106.2
Q ss_pred eeeEEEEeccccCCeEEEEEEEEccC-ccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC
Q psy2776 97 TSTTYEVTKLTTKHEYMFRVAAVNAI-GTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP 174 (803)
Q Consensus 97 ~~~~l~i~~~~~~d~g~y~c~a~~~~-g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p 174 (803)
....|+|..++..++|.|.=+..+.. +....+....+.+. .+|.+...+ .-+.+|+...=.|.+..+ |.-
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y------r~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY------KRPNITVIG--DPVLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe------cCCCccccC--CccccCCCceEEEEeeeecCCC
Confidence 46779999999999999986654322 22222223332322 445444433 346789999999999864 333
Q ss_pred --eeEEEEcCeecccee----EEE--ec---CeeEEEEecCCCCc--ceEEEEEEEcCCcCeeeE---E--EEEEeeeec
Q psy2776 175 --DIKWYKDDSLIKGRN----ITY--EN---NVARFTVVNCSESS--EGRYTCKATNEAGTAETS---C--TLLVQGKEI 236 (803)
Q Consensus 175 --~i~W~~~~~~~~~~~----~~~--~~---~~~~L~i~~v~~~d--~G~Y~C~a~n~~g~~~~s---~--~l~V~~~~~ 236 (803)
.+.|++|+.++.... +.. ++ ..++|.+.+....| -=..+|.+....+....+ + .-.|...
T Consensus 359 SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~-- 436 (566)
T PHA03269 359 SVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPF-- 436 (566)
T ss_pred ceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccC--
Confidence 499999998887421 111 11 12344443221122 234699998654433222 1 1222222
Q ss_pred ccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeec-cccceeeccccccccceeeeeeccCCCccccccccCCce
Q psy2776 237 KESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSV-SKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV 315 (803)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (803)
+...+. ...|+-.|.+.=.+.. -...|+.+.......... ....-..-|. ++.-.+..
T Consensus 437 ---PtISm~---------------FedG~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~-itG~C~ehPG--LVNLRS~~ 495 (566)
T PHA03269 437 ---PNVSIE---------------IIDGHIVCLAKCVPRGVVHFNWWINDIPIEHENSE-ILGVCDNNKR--FVNLQSSC 495 (566)
T ss_pred ---CeEEEE---------------EeCCEEEEecccccCCCceEEEEecCCCCCCccce-eeccCCCCCC--ceeecccc
Confidence 122121 2335556665544443 378888777663332221 1111111111 11111111
Q ss_pred eeeccccceeEEEEe-cCCc
Q psy2776 316 TLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~ 334 (803)
..-...+.+...|++ |.|.
T Consensus 496 pLS~~dgpveYTCrL~GYP~ 515 (566)
T PHA03269 496 DTSELDGPITYSCHLDGYPK 515 (566)
T ss_pred cccccCCceeEEEEEeecCC
Confidence 122335678999999 8764
No 366
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.25 E-value=0.013 Score=44.53 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=36.1
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+.|.|+|.. ...|.|++ |..+... .+.+|.+.++ ..+-.|.|.|.++|
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------~~~tlnLGs~-~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV---------SNTLLDLGSR-INDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc---------cccEEeccCc-ccCCCcceEecCcc
Confidence 5689999965 25699999 4443211 1447888888 67888999999988
No 367
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.24 E-value=0.0096 Score=50.78 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=41.8
Q ss_pred eecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCc--EEEEec---CC----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 521 SVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKA--CRIFID---EE----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~--~~~~~~---~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
..|+.++|.|.+.|+-+ ..++|+++|.++..... .....+ ++ .+.|.|..-...+...|+|.|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 34778999999999654 36799999998764321 111111 11 13444433222455689999998643
No 368
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.22 E-value=0.0093 Score=52.23 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=47.5
Q ss_pred cCCeEEEEEEEeec-----CCCceEEeeCCeeccC---CCCeEEE--------e--eCceEEEEEecCCCCCCceeEEEE
Q psy2776 686 EKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLS---SPKKREI--------F--DGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-----p~~~v~W~~~~~~l~~---~~~~~~~--------~--~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
=+++|.|.|.+... +...|.|+++|..+.. ....... . -.+.+.|.+... ..-.|+|+|.
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~--~a~~GnYTCe 103 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKS--DAVEGNYTCE 103 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHH--HHH-EEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcch--hccccceEEE
Confidence 38999999999752 3446999999987631 1111100 0 012345888775 2448999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
+.+...+....+.|+++
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99999888888888875
No 369
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.17 E-value=0.49 Score=49.59 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=107.4
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC---
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP--- 174 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p--- 174 (803)
...|.|..++...+|.|.=+..+..+....+....+.+. .+|.+...+ ..+.+|+...=.|.+..+-++
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y------r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv 252 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF------RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRA 252 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe------cCCcccccC--CccccCCCceEEEEeeeecCCCce
Confidence 456999999999999999987766553333333333333 455554433 346789999999999864333
Q ss_pred eeEEEEcCeeccc-eeEE---Eec-----CeeEEEEecCCCC-cceEEEEEEEcCCcCeee---EE--EEEEeeeecccc
Q psy2776 175 DIKWYKDDSLIKG-RNIT---YEN-----NVARFTVVNCSES-SEGRYTCKATNEAGTAET---SC--TLLVQGKEIKES 239 (803)
Q Consensus 175 ~i~W~~~~~~~~~-~~~~---~~~-----~~~~L~i~~v~~~-d~G~Y~C~a~n~~g~~~~---s~--~l~V~~~~~~~~ 239 (803)
.+.||+|+.++.. ..+. ... ..++|++.+.... .-=..+|.+.-..+.... ++ .-.|...
T Consensus 253 ~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~----- 327 (466)
T PHA03270 253 AFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPR----- 327 (466)
T ss_pred EEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccC-----
Confidence 4999999998853 2111 111 1233433332211 112678998865443322 11 1222222
Q ss_pred cceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee-eccCCCccccccccCCceeee
Q psy2776 240 ARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW-FESKSTPAVEFLSKLPSVTLV 318 (803)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (803)
+...+. .+.++-.|.+.=.+..-.+.|+............... .....+....+-... .+
T Consensus 328 P~Isv~---------------F~dG~AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~----pl 388 (466)
T PHA03270 328 PTIEME---------------FGGDEAVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSAL----PL 388 (466)
T ss_pred CeEEEE---------------EeCCEEEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeeccc----cc
Confidence 222222 2234555665555555677887776655333222211 111111111111111 11
Q ss_pred ccccceeEEEEe-cCCc
Q psy2776 319 PHLGDATFQVEL-SSPD 334 (803)
Q Consensus 319 ~~g~~~~l~C~~-~~p~ 334 (803)
. .+.+..+|.+ |.|.
T Consensus 389 S-d~~~eYTCrl~GYP~ 404 (466)
T PHA03270 389 S-REHSEYTCRLVGYPA 404 (466)
T ss_pred c-cCCceEEEEEeecCC
Confidence 2 2457899998 7764
No 370
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.17 E-value=0.021 Score=47.34 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=43.3
Q ss_pred EEecCCeEEEEEEEeec-CC--CceEEeeCCeeccCCCCeEE----EeeCceEEEEEecCCCCCCce-eEEEEEEccC
Q psy2776 683 TVKEKGTIRLMAKVKAS-PA--PSIVWFRNNKPLLSSPKKRE----IFDGENIILELKEADSETDAG-DYKVVATNEL 752 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~--~~v~W~~~~~~l~~~~~~~~----~~~~~~~~L~i~~v~~~~D~G-~Y~C~a~N~~ 752 (803)
.+.+|..+++.|.+.+. |. ..+.|++++..+....-... ........+.+... .+|.| .|.|.|.=.+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt--reD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT--IEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc--hhhCCcEEEEEEEEee
Confidence 34679999999999754 66 47999998776654321110 01123356666664 45555 8999998443
No 371
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.05 E-value=0.036 Score=48.23 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=49.9
Q ss_pred eccccceeEEEEe-c-CCc-eeeEEeecCeeccccce---eEEEEc-CceeEEEEeecCCC---C-CccEEEEEeccccc
Q psy2776 318 VPHLGDATFQVEL-S-SPD-IQVKWLKKGKEIKESAR---HIITSR-GTQRKLVIKRVTQD---D-ETDIGVLALNVKSV 386 (803)
Q Consensus 318 ~~~g~~~~l~C~~-~-~p~-~~i~W~~~g~~l~~~~~---~~~~~~-~~~~~l~i~~~~~~---d-~g~y~c~~~~~~~~ 386 (803)
+.+++.++|.|.+ + .|. .++.|++||..+..+.. .....+ +.......-.+... + ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3356789999999 4 554 79999999998875432 122222 33322222233332 3 56899999999888
Q ss_pred eeeeeeec
Q psy2776 387 SKLKWLDF 394 (803)
Q Consensus 387 ~~~~~~~~ 394 (803)
....|...
T Consensus 95 ~~~~~~~~ 102 (115)
T cd05769 95 DTDKWQSI 102 (115)
T ss_pred cceeeeee
Confidence 88888554
No 372
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.05 E-value=0.026 Score=49.04 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=47.4
Q ss_pred EEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe--EEEee--Cc---eEEEEEecCCCCCC-ceeEEEEEEccC
Q psy2776 683 TVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK--REIFD--GE---NIILELKEADSETD-AGDYKVVATNEL 752 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~--~~~~~--~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~ 752 (803)
....++.++|.|.+.|+ |. ..|.|++||.++..+... ....+ +. .+.|.|... ...| .-.|+|.+.-..
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~-~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSAT-EWFNPRNTFTCIVQFYG 92 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChH-HhccCCCeEEEEEEEeC
Confidence 34457789999999997 66 389999999988654221 11111 22 233555442 1113 567999999776
Q ss_pred cceeeeE
Q psy2776 753 GSATHGA 759 (803)
Q Consensus 753 G~~~~~~ 759 (803)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T cd05769 93 GTDTDKW 99 (115)
T ss_pred Cccceee
Confidence 6655444
No 373
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.01 E-value=0.041 Score=46.17 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=38.7
Q ss_pred cCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEe-eCce---EEEEEecCCCCCCceeEEEEEEccC
Q psy2776 686 EKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIF-DGEN---IILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 686 ~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~-~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++.++|.|.+.|+ |.. .|+|++||.+ ..+.. -.... ++.+ +.|.+... .-...-.|+|.+.-.-
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~-~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPAS-EWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHH-HcCCCCcEEEEEEeCC
Confidence 46679999999996 543 7899999997 33211 01111 3333 23444332 1112566999998754
No 374
>PHA02633 hypothetical protein; Provisional
Probab=96.00 E-value=0.017 Score=42.72 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=34.6
Q ss_pred CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 562 ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 562 ~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
.+..|.|.++..+|+|.|.|..+|..-....++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 4568999999999999999999998777888888888664
No 375
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.97 E-value=0.044 Score=46.96 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=47.4
Q ss_pred ceeEEecCCeEEEEEEEeecCCC---ceEEeeCCe-ecc--------------CCCCeEEEee--CceEEEEEecCCCCC
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNK-PLL--------------SSPKKREIFD--GENIILELKEADSET 739 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~~-~l~--------------~~~~~~~~~~--~~~~~L~i~~v~~~~ 739 (803)
....+..|+.++|.|++.|.-.. .+.|+|+.. .++ ...++.+..+ .+...|.|.++ +.+
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L-~a~ 84 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL-RAN 84 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC-CHH
Confidence 34667889999999999876444 477888421 110 2233333333 45788999999 799
Q ss_pred CceeEEEEE
Q psy2776 740 DAGDYKVVA 748 (803)
Q Consensus 740 D~G~Y~C~a 748 (803)
|.+.|.|.-
T Consensus 85 DTa~Y~Ca~ 93 (115)
T cd05721 85 QTDIYFCKI 93 (115)
T ss_pred HCeEEEEEe
Confidence 999999976
No 376
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.91 E-value=0.037 Score=46.42 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=38.1
Q ss_pred cceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCc-EEEEecCCeEEE-EEeeeccCcCe-EEEEEEEcCC
Q psy2776 523 KSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKA-CRIFIDEETSTI-AIYSVVRADTS-TYTVTATNAA 587 (803)
Q Consensus 523 g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~-~~~~~~~~~~~L-~i~~v~~~dsG-~Y~C~a~n~~ 587 (803)
+..++|.|.+.|+ |. ..++|.+||..+..+.. ......++...+ .-..+..++.| .|+|.+....
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 5678999999996 43 47799999998765421 111222222111 11133333234 5999999853
No 377
>KOG0196|consensus
Probab=95.90 E-value=0.24 Score=56.05 Aligned_cols=131 Identities=22% Similarity=0.382 Sum_probs=95.8
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCCCCc----eeeEEEEEe---cCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNALGQA----SATTKVTLL---SAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTG 77 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~----~~~~~l~V~---~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~ 77 (803)
....+|.++.++-...|...|.|..... ...+.|.|. ..|.+............+++|+|..|..+. ..+..
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~pn-g~ild 475 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPN-GVILD 475 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCC-Cccee
Confidence 4578899999999999999999986542 222333332 233333344556677899999999987754 34788
Q ss_pred EEEEeecCC-CceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEE
Q psy2776 78 YVLESHDKD-EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVV 136 (803)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~ 136 (803)
|-+.+.+.+ .......+.....+.+|.+|+++..|.|+++|...+|-+..+.....-+.
T Consensus 476 YEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 476 YEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred EEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 888777664 23344555556788999999999999999999999999888877665554
No 378
>PHA02982 hypothetical protein; Provisional
Probab=95.81 E-value=0.095 Score=48.96 Aligned_cols=111 Identities=20% Similarity=0.335 Sum_probs=71.8
Q ss_pred eeeecCCcEEEEEEEC-ccCCCeeEEEEcCee-c----------cc-----------eeEEEecCeeEEEEecCCCCcce
Q psy2776 154 SVAGFQSSVTLECVVS-GVPTPDIKWYKDDSL-I----------KG-----------RNITYENNVARFTVVNCSESSEG 210 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~-~----------~~-----------~~~~~~~~~~~L~i~~v~~~d~G 210 (803)
+....|+++.|+|... +.......|++++.- + +. ....+.++.++|+|+++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 4455689999999965 344456889875431 1 11 13556678899999999999999
Q ss_pred EEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 211 RYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 211 ~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
.|+|.+....+..+. .-.|.|+.. ...+.+. .-..+..+.|++......- +.|+
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~---------------~V~~~W~--e~nNeT~V~CyVgS~~~dv-p~W~ 168 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKE---------------DILYVVE--EHNNETIITCFVGSKHGDV-PRFI 168 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecc---------------eEEEEEE--ecCCeEEEEEEEEeccCCC-ccEE
Confidence 999999987766554 445666333 1222222 2344566677776665532 2565
No 379
>PHA02633 hypothetical protein; Provisional
Probab=95.78 E-value=0.023 Score=41.98 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=34.6
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+...|.|-++..+|+|.|.|...|..-..+.++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3457999999999999999999998888888888888765
No 380
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.77 E-value=0.024 Score=47.69 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=39.7
Q ss_pred EEecCCeEEEEEEEeec--CCC-ceEEeeCCeecc-CCC-CeEEEeeCceE---EEEEecCCCCCCceeEEEEEEccCc
Q psy2776 683 TVKEKGTIRLMAKVKAS--PAP-SIVWFRNNKPLL-SSP-KKREIFDGENI---ILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~--p~~-~v~W~~~~~~l~-~~~-~~~~~~~~~~~---~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+..|+.++|.|.+.|+ |.. .++|.|||.... ... ......++... .|.+..- .-.+.-.|+|.+....-
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~-~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTD-DWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHH-HccCCCcEEEEEECCCC
Confidence 35568999999999998 443 689999874332 111 11111233322 3334321 11134469999987643
No 381
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.55 E-value=0.096 Score=43.74 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=46.7
Q ss_pred CeeeecCCcEEE-EEEEC-ccCCCeeEEEEcCeeccceeEEEe-c----CeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 153 DSVAGFQSSVTL-ECVVS-GVPTPDIKWYKDDSLIKGRNITYE-N----NVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 153 ~~~v~~G~~~~L-~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~-~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
...+.+|+.+.+ .|.+. |.|++.|.|+.+............ + -...|.+..-+.+|.-.++|.+.+..-.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 345678899999 99976 799999999986332211111111 1 1245777666777888999999987543
No 382
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.48 E-value=0.074 Score=44.42 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=47.2
Q ss_pred eEEecCCeEEE-EEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 682 KTVKEKGTIRL-MAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 682 ~~v~~g~~v~L-~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+.+|+.+.+ .|.+ .|.|.+.+.|+.+..... ........++. .++|.+..- ..+|.-.++|++....-...
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~-r~d~G~~vtC~V~H~al~~~ 88 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPS-RHANGHPLTCVVSHPALQQD 88 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeC-HHHCCcEEEEEEeCcccCCC
Confidence 46778888888 9987 566999999998633221 11111111121 345666554 45677779999998755433
Q ss_pred eeEEE
Q psy2776 757 HGARV 761 (803)
Q Consensus 757 ~~~~l 761 (803)
..+.+
T Consensus 89 ~~~~~ 93 (97)
T cd07704 89 FRITH 93 (97)
T ss_pred ceeeE
Confidence 33333
No 383
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.43 E-value=1.2 Score=47.37 Aligned_cols=116 Identities=12% Similarity=0.193 Sum_probs=71.2
Q ss_pred eEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC--e
Q psy2776 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP--D 175 (803)
Q Consensus 99 ~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p--~ 175 (803)
..|+|..++..++|.|.=+..+..|....+....+.+. .+|.+...+ ..+.+|+...=.|.+..+ |.- .
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y------r~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~ 269 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY------NAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVK 269 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe------cCCcccccC--CccccCCCceEEEEeeeecCCCceE
Confidence 45999999999999998665454343223333333333 455554433 346789999999999864 332 5
Q ss_pred eEEEEcCeeccc-ee----EE--Eec---CeeEEEEecC-CCCcceEEEEEEEcCCcC
Q psy2776 176 IKWYKDDSLIKG-RN----IT--YEN---NVARFTVVNC-SESSEGRYTCKATNEAGT 222 (803)
Q Consensus 176 i~W~~~~~~~~~-~~----~~--~~~---~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~ 222 (803)
+.|++|+.++.. .. .. .++ ..++|++.+. ..+.-=..+|.+.-..+.
T Consensus 270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 999999998872 21 11 111 2344555443 223344689999865544
No 384
>KOG0196|consensus
Probab=95.40 E-value=1.1 Score=51.01 Aligned_cols=178 Identities=20% Similarity=0.225 Sum_probs=101.6
Q ss_pred EEecCCeEEEEeeCCCCCCCCCeEEEEE-EeecCCCceeEEEee-----------eeeeEEEEeccccCCeEEEEEEEEc
Q psy2776 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVL-ESHDKDEFMVWNKIE-----------TTSTTYEVTKLTTKHEYMFRVAAVN 120 (803)
Q Consensus 53 ~~~~~~~v~l~c~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~c~a~~ 120 (803)
....+.++.|.|.+|+..|+..-..|-+ .++-.........++ .....++|.+|.+...|.|.+.|.|
T Consensus 340 s~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvN 419 (996)
T KOG0196|consen 340 SNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVN 419 (996)
T ss_pred eecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccccEEEEEEee
Confidence 3467999999999998877654444443 222211111222222 2368899999999999999999998
Q ss_pred cCccCCCc-ceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC-----eeEEEEcCeeccceeEEEec
Q psy2776 121 AIGTGPAS-HNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-----DIKWYKDDSLIKGRNITYEN 194 (803)
Q Consensus 121 ~~g~~~~s-~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-----~i~W~~~~~~~~~~~~~~~~ 194 (803)
....-.+. .....+.+.... ..|+.+.. -.......+.++|.....-.|.. ++.|+..+..-... .....
T Consensus 420 gVS~lsp~~~~~a~vnItt~q-a~ps~V~~--~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~~-~~~~t 495 (996)
T KOG0196|consen 420 GVSDLSPFPRQFASVNITTNQ-AAPSPVSV--LRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERSY-STLKT 495 (996)
T ss_pred cccccCCCCCcceeEEeeccc-cCCCccce--EEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccce-eEEec
Confidence 65332111 122222222111 11111100 01122345677777776433332 46666554311111 12223
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
...+.+|..+.+.....++.+|....|....+-.+..+..
T Consensus 496 ~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 496 KTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred ccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 3456889999999999999999998887766655555544
No 385
>KOG4597|consensus
Probab=95.28 E-value=0.042 Score=57.67 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=79.4
Q ss_pred EEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc---Ceecc-c
Q psy2776 112 YMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD---DSLIK-G 187 (803)
Q Consensus 112 g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~---~~~~~-~ 187 (803)
-.++|+.....+.......-. .+...|.....+.+...+....+.+|++..++|.+.|.+.+.|.|.+- +..+- .
T Consensus 165 ~iv~C~~~~t~~~~~~~~cet-tm~ptpe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~ 243 (560)
T KOG4597|consen 165 RIVYCIHGKTWPRVSPDPCET-TMAPTPEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR 243 (560)
T ss_pred eeEEEeccccCCCCCCCcccc-ccCCCCCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec
Confidence 356777665555433332221 111112212224555556667788999999999999999999999762 22111 1
Q ss_pred eeEEEe----cCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 188 RNITYE----NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 188 ~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
.+..+. .....|.|-+....|+|.|+|.+.+..|.....+.+.+..
T Consensus 244 ~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 244 PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeeec
Confidence 121121 1356799999999999999999999999988888776653
No 386
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.21 E-value=0.091 Score=45.05 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=44.8
Q ss_pred cCeeeecCCcEEEEEEECccCCC---eeEEEEcCeec-c---------------ceeE--E--EecCeeEEEEecCCCCc
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTP---DIKWYKDDSLI-K---------------GRNI--T--YENNVARFTVVNCSESS 208 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p---~i~W~~~~~~~-~---------------~~~~--~--~~~~~~~L~i~~v~~~d 208 (803)
....+..|+.++|.|.+.|.... .+.|.|..... . ..++ . ..++...|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 44567788999999999764333 48898743211 0 0111 1 22346789999999999
Q ss_pred ceEEEEEEE
Q psy2776 209 EGRYTCKAT 217 (803)
Q Consensus 209 ~G~Y~C~a~ 217 (803)
++.|.|..+
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999654
No 387
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.12 E-value=0.075 Score=44.10 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=42.6
Q ss_pred eecCCcEEEEEEECc-cCC--CeeEEEEcCeeccceeEEE-------ecCeeEEEEecCCCCcce-EEEEEEEcC
Q psy2776 156 AGFQSSVTLECVVSG-VPT--PDIKWYKDDSLIKGRNITY-------ENNVARFTVVNCSESSEG-RYTCKATNE 219 (803)
Q Consensus 156 v~~G~~~~L~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G-~Y~C~a~n~ 219 (803)
+.+|..++++|.+.+ .|. .++.|++....+....+.- ......+++.- +.+|.| .|+|+|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 468999999999985 554 4699999877766443221 11234555555 366666 999999853
No 388
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.94 E-value=0.13 Score=43.05 Aligned_cols=62 Identities=21% Similarity=0.425 Sum_probs=37.4
Q ss_pred cCCcEEEEEEECc-cCCC-eeEEEEcCeecccee-----EEE-ecC---eeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 158 FQSSVTLECVVSG-VPTP-DIKWYKDDSLIKGRN-----ITY-ENN---VARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 158 ~G~~~~L~C~~~g-~p~p-~i~W~~~~~~~~~~~-----~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.++.++|.|.+.| .|.. .++|++++.. .... ... ++. ...|.+..-.-...-.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3567999999998 4433 5899999987 3221 111 111 1234443322223667999999865
No 389
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.92 E-value=5.6 Score=41.43 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=42.4
Q ss_pred CeeeecCCcE-EEEEEECccCCC-eeEEEEcCeeccceeE------------EEe---cCeeEEEEecCCCCcceEEEEE
Q psy2776 153 DSVAGFQSSV-TLECVVSGVPTP-DIKWYKDDSLIKGRNI------------TYE---NNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 153 ~~~v~~G~~~-~L~C~~~g~p~p-~i~W~~~~~~~~~~~~------------~~~---~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
++.+..|+.. .|.|.....-.+ .+...|.+..-+...+ -+- .....+.+.|++..|.|.|+|.
T Consensus 20 nIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCI 99 (500)
T PHA02914 20 NIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCI 99 (500)
T ss_pred eEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEE
Confidence 4556667766 999998643333 4666664322111111 111 1346788999999999999998
Q ss_pred EEcCC
Q psy2776 216 ATNEA 220 (803)
Q Consensus 216 a~n~~ 220 (803)
..-..
T Consensus 100 FYLn~ 104 (500)
T PHA02914 100 FYLGD 104 (500)
T ss_pred EEeCC
Confidence 87543
No 390
>PHA03042 CD47-like protein; Provisional
Probab=94.91 E-value=0.13 Score=50.51 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=51.7
Q ss_pred CCeEEEEEEEeec-----CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 687 KGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 687 g~~v~L~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
++++.+.|.+..- -...+.|++||..+...+.. +.+.|.+.-. +.-.|+|+|.|.+..-+....++|
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f~--~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNFS--KNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEecc--ccCCCceeEEEeecccCccEEEEE
Confidence 7899999999742 34469999999887432221 2356777663 567899999999977666677777
Q ss_pred EEEee
Q psy2776 762 TVDVE 766 (803)
Q Consensus 762 ~V~~~ 766 (803)
+-++.
T Consensus 103 k~~~~ 107 (286)
T PHA03042 103 QYVIK 107 (286)
T ss_pred EEEEE
Confidence 76543
No 391
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.76 E-value=0.068 Score=44.91 Aligned_cols=67 Identities=15% Similarity=0.229 Sum_probs=38.7
Q ss_pred EeecceeEEEEEEcCcC--C-CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 520 LSVKSQWKVEVKYFGFP--R-PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p--~-~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
+..+..++|.|.+.++- . ..|.|.++|.. .........+.+ .+.|.|..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 34578899999999854 3 57899999875 211001111111 13444432222223469999998754
No 392
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.55 E-value=0.1 Score=43.89 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=40.0
Q ss_pred eEEecCCeEEEEEEEeec--CC-CceEEeeCCeeccCCC-CeEEEeeCceEEEEEecCCCCC--Cc-eeEEEEEEccCc
Q psy2776 682 KTVKEKGTIRLMAKVKAS--PA-PSIVWFRNNKPLLSSP-KKREIFDGENIILELKEADSET--DA-GDYKVVATNELG 753 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~--p~-~~v~W~~~~~~l~~~~-~~~~~~~~~~~~L~i~~v~~~~--D~-G~Y~C~a~N~~G 753 (803)
.....++.++|.|.+.|+ |. ..|.|.++|.. .... ......++.+.....-.+ ..+ .. ..|+|.+.....
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v-~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPG-CAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEe-CHHHhcCCCeEEEEEECCCc
Confidence 334468899999999985 43 37999999875 2111 111122333333223333 221 23 449999997654
No 393
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.54 E-value=0.17 Score=49.59 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=37.5
Q ss_pred CCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 536 PRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 536 p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.+|.+.|... |..+++.....+.. .+.|.+.+...++||.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~---TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE---TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc---CceEEeeccccccCCceEEEEEEEe
Confidence 5688999875 55666555555543 4679999999999999999997553
No 394
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.24 E-value=0.16 Score=44.71 Aligned_cols=79 Identities=8% Similarity=0.054 Sum_probs=46.1
Q ss_pred eecceeEEEEEEcCc-----CCCeeEEeeCCeeecC--CCcEEE-----------EecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 521 SVKSQWKVEVKYFGF-----PRPEISWMKNGAEITD--SKACRI-----------FIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-----p~~~v~W~~~g~~i~~--~~~~~~-----------~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
.-+++|.|.|.+... +...++|..+|..+-. +..... ....+...|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 447899999998652 2346899998876531 111111 01123456888775444 9999999
Q ss_pred EEcCCCCeEEEEEEEEee
Q psy2776 583 ATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 583 a~n~~g~~s~s~~l~V~~ 600 (803)
|..........+.|....
T Consensus 104 Vt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 104 VTELSREGETTIELKYRV 121 (130)
T ss_dssp EEETTEEEEEEEEEEE--
T ss_pred EEecCCCceEEEEEEEEE
Confidence 998877777888877644
No 395
>PHA02982 hypothetical protein; Provisional
Probab=94.14 E-value=0.53 Score=44.21 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=55.2
Q ss_pred ceEEeecceeEEEEEEcC-cCCCeeEEeeCCe-eec----------C--------CCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPEISWMKNGA-EIT----------D--------SKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~-~i~----------~--------~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
.....+|+.+.|+|.... ....+..|+++.. .+. . ....+...+...++|+|.++.....
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 345667999999999532 2334678987432 221 0 1223444566789999999999999
Q ss_pred eEEEEEEEcCCCCe-EEEEEEEE
Q psy2776 577 STYTVTATNAAGST-SLDLSLQV 598 (803)
Q Consensus 577 G~Y~C~a~n~~g~~-s~s~~l~V 598 (803)
|=|+|+|+...+.. ...--|.|
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred CceEEEEecCCCchheeheeeeE
Confidence 99999999876553 33555555
No 396
>PHA03042 CD47-like protein; Provisional
Probab=91.72 E-value=0.73 Score=45.38 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=54.8
Q ss_pred CCcEEEEEEECcc-----CCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 159 QSSVTLECVVSGV-----PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 159 G~~~~L~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
++++.+.|.++.- ..-.+.|.+++..+...+-. +..+|.+ +.+..=.|+|+|.|.+.....+....|....
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~IeLk~~~ 106 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIELQYVI 106 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEE-eccccCCCceeEEEeecccCccEEEEEEEEE
Confidence 6899999999742 23359999998876543322 2355666 4456669999999999888778888777765
Q ss_pred eecccccc
Q psy2776 234 KEIKESAR 241 (803)
Q Consensus 234 ~~~~~~~~ 241 (803)
....+...
T Consensus 107 ~WFs~~E~ 114 (286)
T PHA03042 107 KWFTSEEI 114 (286)
T ss_pred EccChhhh
Confidence 54444433
No 397
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=91.48 E-value=0.55 Score=46.14 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=39.6
Q ss_pred CCCceEEee-CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 700 PAPSIVWFR-NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 700 p~~~v~W~~-~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
..|.+.|.. +|+.+..+....+..+|. |.+.+. .+.++|.|+|..+=..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F-~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGK---LMFKNF-QESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCce---EEeecc-ccccCCceEEEEEEEe
Confidence 568899998 567777666777766555 999999 7999999999998655
No 398
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.48 E-value=6.9 Score=42.55 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=57.8
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+...|+|.+++..++|.|+--..+..+.... .+.|+++.......++... ..
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~---------vflvtVk~~~~~~~~~Pp~------------------~~ 183 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHS---------VFFVTVKKPPKQPQTPPAP------------------LV 183 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEE---------EEEEEecCCCcCCCCCCCC------------------cc
Confidence 34567999999999999999999887662222 4567777644433332110 11
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCcC---C--CeeEEee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP---R--PEISWMK 544 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p---~--~~v~W~~ 544 (803)
-..|..-...+...+-......+|+++.+.-...... + .++.|+.
T Consensus 184 pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 184 PQVPARHHTDFHVRGYHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred ccCCccCCceEEEecceeEEecCCCceeEeEEEeeccCCCCceEEEEEEE
Confidence 1122222222333333456677899988877755432 1 3678973
No 399
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=91.33 E-value=0.32 Score=40.65 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCCceEEEEEeeccCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy2776 2 EEDSATLTIVKFEDKDLGDYTISLSNALGQA-SATTKVTL 40 (803)
Q Consensus 2 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V 40 (803)
+..+.+|.|..+++.|+|.|...+++..|.. .+..+|.|
T Consensus 67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4467899999999999999999999999986 33444444
No 400
>PHA03286 envelope glycoprotein E; Provisional
Probab=90.81 E-value=14 Score=39.45 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=58.3
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+....|+|.+++..++|.|+--..|..|..... .+.|+++.......|++ ..
T Consensus 124 ~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~--------vflVtV~~~~~~r~p~~--------------------~~ 175 (492)
T PHA03286 124 GRGKELTILNASSQNAGIYIRYSRNGTRTAVMD--------VLVVWVSGHGRARDPTM--------------------NI 175 (492)
T ss_pred CCCCceEEeeccccccceEEEEEcCCCCcEEEE--------EEEEEEecCCCCCCCCc--------------------cc
Confidence 444679999999999999999999877666654 35667753322222221 11
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCc-----CCCeeEEee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-----PRPEISWMK 544 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-----p~~~v~W~~ 544 (803)
-.+|......+...+.......+|+++.+....... -..++.|+.
T Consensus 176 pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 176 PITPPSTRVDLSLKNFKAFLYNVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred CCCCcccceEEEEecccceEecCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 122222222334444456677889998877765421 124678973
No 401
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.69 E-value=1.2 Score=37.35 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=44.3
Q ss_pred EEEEEEECccCCCe--eEEEEcCeecc----ceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEEEEe
Q psy2776 162 VTLECVVSGVPTPD--IKWYKDDSLIK----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLVQ 232 (803)
Q Consensus 162 ~~L~C~~~g~p~p~--i~W~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~ 232 (803)
+...-...+.+... ++|..+..... +.++.+......|.|+.+++.|+|.|.-.+++..|.... .+.+.|.
T Consensus 30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 33333343445444 45543332222 235667777789999999999999999999999998643 3555543
No 402
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=90.29 E-value=4.2 Score=32.68 Aligned_cols=75 Identities=44% Similarity=0.814 Sum_probs=51.5
Q ss_pred ceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee---eeeEEEEeccccCCeEEEEEEEEccCccCC
Q psy2776 50 PEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET---TSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126 (803)
Q Consensus 50 ~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~ 126 (803)
..+......++.|+|.++.... ..+..|.+....... ..|..... ....+.|.++.+...+.++..+.+..|.+.
T Consensus 7 ~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~ 84 (93)
T cd00063 7 LRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGS-GDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESP 84 (93)
T ss_pred cEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCC-CCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCC
Confidence 3444444689999999875532 345567776655432 25655554 567889999999999999999887765543
No 403
>PHA03283 envelope glycoprotein E; Provisional
Probab=90.05 E-value=4.9 Score=43.65 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=31.1
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
....|+|.+++.+++|.|+-...+..+.....+.|.|..+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~ 171 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKP 171 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCC
Confidence 3467999999999999999999987764444566666653
No 404
>PHA03282 envelope glycoprotein E; Provisional
Probab=89.94 E-value=7.9 Score=41.37 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=24.7
Q ss_pred eeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 413 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
..+++..|+. |.|.+++.+|+|.|+-.+....
T Consensus 116 ~~rvs~~n~t--l~l~~a~~~DsG~Y~L~~~~~~ 147 (540)
T PHA03282 116 PPRVAVVNGT--LVLREARETDSGMYVLSVSRAP 147 (540)
T ss_pred CcceeEecce--EEEeeccccCCceEEEEecCCC
Confidence 4455666555 9999999999999999975543
No 405
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=87.74 E-value=0.93 Score=36.66 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=26.6
Q ss_pred cceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 623 TLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
...+++.+|.+...|.|+++|.|..|.++.
T Consensus 55 ~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~ 84 (85)
T PF00041_consen 55 ETSYTITGLQPGTTYEFRVRAVNSDGEGPP 84 (85)
T ss_dssp SSEEEEESCCTTSEEEEEEEEEETTEEEEE
T ss_pred eeeeeeccCCCCCEEEEEEEEEeCCcCcCC
Confidence 458999999999999999999999997653
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.62 E-value=3.4 Score=33.99 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=42.3
Q ss_pred ceeEEecCCeEEEEEEEeec-----CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 680 EEKTVKEKGTIRLMAKVKAS-----PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~-----p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
....+..|++++..|...-. ....+.|+.|+..+ +..++....++ .+.+.+.+. ....+-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~-~SsVT~~~~-~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDT-VSSVTLPNL-NPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTT-EEEEEESS---SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCe-EEEEEEccC-CCCCceEEEEE
Confidence 34567889999999998632 44579999999955 44555555444 377888877 44555566665
No 407
>KOG4367|consensus
Probab=86.70 E-value=1.8 Score=45.05 Aligned_cols=76 Identities=29% Similarity=0.437 Sum_probs=58.9
Q ss_pred cCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeee-eeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeE
Q psy2776 56 SDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIET-TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 56 ~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~ 133 (803)
+..+++|.|+.|...+ .+.-+|.++..+.++. .+..+-. .+...+|..+.-...|.-|+.+.|..|.++.+....+
T Consensus 451 ~nns~t~~wkqp~~~~-~~~dg~~leld~g~~g-~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 451 HNNSATLSWKQPPLST-VPADGYILELDDGNGG-QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 527 (699)
T ss_pred cCCceEEEeecCCCCC-CCCcceEEEeecCCCC-ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence 5789999999765543 6788999998887666 5555544 3677889999888888889999999998877765543
No 408
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=86.69 E-value=9 Score=31.53 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCCeeEeccceeEEe--cC--CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 671 QAPLFIERFEEKTVK--EK--GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~--~g--~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+++|+.+....... .+ +...|.+++.+. ...+.|+.||..+..... ...+.+. ....|.|+-
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~~~----~~~~G~h~l 75 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLFWQ----PDRPGEHTL 75 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEEeC----CCCCeeEEE
Confidence 366666666554332 22 356677777666 459999999999843322 1234442 346699999
Q ss_pred EEEccCcceee
Q psy2776 747 VATNELGSATH 757 (803)
Q Consensus 747 ~a~N~~G~~~~ 757 (803)
.+....|....
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 99999998754
No 409
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=86.26 E-value=2.2 Score=44.19 Aligned_cols=21 Identities=14% Similarity=0.566 Sum_probs=17.8
Q ss_pred eEEEEEEEeec-CCC-ceEEeeC
Q psy2776 689 TIRLMAKVKAS-PAP-SIVWFRN 709 (803)
Q Consensus 689 ~v~L~C~~~g~-p~~-~v~W~~~ 709 (803)
.++|+|.+.|+ |.. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 68999999998 443 7899999
No 410
>PHA03281 envelope glycoprotein E; Provisional
Probab=85.51 E-value=9.5 Score=41.51 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.0
Q ss_pred eEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 416 ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 416 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
+.+.++...|++.++..+++|.|.|++.-..-...+
T Consensus 468 L~~~~n~vdL~F~nApasaSGLYVfVl~yNGHVeAW 503 (642)
T PHA03281 468 LEIHDGGSALKFVDAAESLSGLYVFIIHFNGHVEAV 503 (642)
T ss_pred ccccCCCcceEeccCCcccCceEEEEEEECCeeeee
Confidence 455667777999999999999999999755444444
No 411
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=85.47 E-value=37 Score=32.87 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=28.9
Q ss_pred EEEEEeecCC--CceEEeeCCeeccCCCCeEEEee--CceEEEE---EecCCCCCCce--eEEEEEEc
Q psy2776 692 LMAKVKASPA--PSIVWFRNNKPLLSSPKKREIFD--GENIILE---LKEADSETDAG--DYKVVATN 750 (803)
Q Consensus 692 L~C~~~g~p~--~~v~W~~~~~~l~~~~~~~~~~~--~~~~~L~---i~~v~~~~D~G--~Y~C~a~N 750 (803)
.-|.+.=.|. -.+.|..++.............. +.-..+. ...+ + ...| +|+|...-
T Consensus 94 AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pl-s-~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 94 AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPL-S-DEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCC-C-ccCCceeEEEEEee
Confidence 3466655553 57999998876422222211111 1111222 3333 3 3445 89999874
No 412
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.51 E-value=5.4 Score=32.07 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=40.0
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE-EcCCCCeEEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA-TNAAGSTSLDLSLQ 597 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a-~n~~g~~s~s~~l~ 597 (803)
.+..++.+.++-.-...-.+.+.|.-.+..+... ...+........|+|.+.|.| .+..-.......|.
T Consensus 8 ~~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~~~~----------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 8 NVLPCEVLELTLEKPPGMKPSLFLENPGKKSLET----------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp CEEEEEEESECEEETTTECEEEEEECSSCEEEEE----------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred CEeeeeeEEEEEcCCCCCChhheeeccCcccccc----------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 3445555555433321223567777655443221 234566777889999999999 55544444444444
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 78 v 78 (80)
T PF05790_consen 78 V 78 (80)
T ss_dssp E
T ss_pred c
Confidence 4
No 413
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=84.10 E-value=7.3 Score=31.34 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=24.6
Q ss_pred eEEEEecCCCCcceEEEEEE-EcCCcCeeeEEEEEE
Q psy2776 197 ARFTVVNCSESSEGRYTCKA-TNEAGTAETSCTLLV 231 (803)
Q Consensus 197 ~~L~i~~v~~~d~G~Y~C~a-~n~~g~~~~s~~l~V 231 (803)
..+.+.....+|+|.+.|.| .+..-..+....|.|
T Consensus 43 ~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 43 KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 45777888999999999999 554444444455544
No 414
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=83.97 E-value=2.5 Score=46.34 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=15.8
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc-cCCchhhhhcccccccccccceeeeccCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR-VKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
..|.|.+++..|+|.|+-...+..+..... .+.|.++..... ..|+.. .-.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~--------~~~v~v~~~~~~~~~p~p~--------------------~p~ 140 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQS--------VVFVTVKGPAPDPRTPPPH--------------------HPI 140 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEE--------EEEEEEcCCCcCCCCCCCC--------------------CCC
Confidence 459999999999999999998776666553 345555543322 111110 111
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCcC----C--CeeEEee
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP----R--PEISWMK 544 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p----~--~~v~W~~ 544 (803)
.|..-...+...+.......+|+++.|.-...... + .+|.|+.
T Consensus 141 ~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 141 VPHRHGATFHLKNYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -----SEEEEEE--SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred CCcccccEEEEeccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 12222223333344456778899988888754332 1 3678983
No 415
>PHA03286 envelope glycoprotein E; Provisional
Probab=83.82 E-value=19 Score=38.42 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=31.1
Q ss_pred CeeEEEEecCCCCcceEEEEEEEcCCcCeeeE-EEEEEeee
Q psy2776 195 NVARFTVVNCSESSEGRYTCKATNEAGTAETS-CTLLVQGK 234 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s-~~l~V~~~ 234 (803)
....|+|.+++..++|.|+-...|..|....+ +-|.|.+.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence 34679999999999999999999887765544 45666544
No 416
>KOG1026|consensus
Probab=83.57 E-value=1.1 Score=51.48 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+..|..+++.|...+.|.|...|+.++............. ......+.+ ++|.+.|..|....++.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c--~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC--RSECEVLEN--------DLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccc--cccceeeec--------hhhHHHHhhhhcCceeeeE
Confidence 446778999999999999999999998876555432111111 011112222 8999999999888777777
Q ss_pred Eeee
Q psy2776 598 VLGY 601 (803)
Q Consensus 598 V~~~ 601 (803)
+..+
T Consensus 272 ~~~p 275 (774)
T KOG1026|consen 272 VDLP 275 (774)
T ss_pred Eecc
Confidence 7554
No 417
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.69 E-value=10 Score=31.22 Aligned_cols=68 Identities=24% Similarity=0.389 Sum_probs=46.9
Q ss_pred CcCeeeecCCcEEEEEEECc-----cCCCeeEEEEcCeeccceeEEE-ecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 151 LKDSVAGFQSSVTLECVVSG-----VPTPDIKWYKDDSLIKGRNITY-ENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
++...+..|++++..|.... .....|.|..++..++...... ......+++.+.....+-.|-|....
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 34456778999999999872 2445799999999888765444 34557888888888877788886543
No 418
>PHA03189 UL14 tegument protein; Provisional
Probab=80.72 E-value=9.4 Score=38.36 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=62.3
Q ss_pred eeEEecCCeEEEEEEEeec--CCCceE-----Ee----------eCCeeccCCCCeEEEe------e---CceEEEEEec
Q psy2776 681 EKTVKEKGTIRLMAKVKAS--PAPSIV-----WF----------RNNKPLLSSPKKREIF------D---GENIILELKE 734 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~--p~~~v~-----W~----------~~~~~l~~~~~~~~~~------~---~~~~~L~i~~ 734 (803)
.+.+..|+.+++.|.+-.. |...+. |- .+|..+.++-.+.+.. + ....+|++.-
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v 140 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRV 140 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEE
Confidence 3567789999999998543 444332 21 1233333332222221 1 2356677665
Q ss_pred CCCCCCceeEEEEEEccC-cceeeeEEEEEEeeccC---CCCCcccCCccceeeeeeeeEEEecc
Q psy2776 735 ADSETDAGDYKVVATNEL-GSATHGARVTVDVEKVG---RPSINSIDIDLNHVHYLAQSTEVDVT 795 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~~~~---pp~~~~~~~~~~~~~~~~~~~~~~~~ 795 (803)
+ .+-+|.|.|+..|.- |.....+.|.-+++... .|.....-...+...++|.-+|-...
T Consensus 141 ~--t~taG~Y~CvLrN~tHglv~~rf~ivtdvetL~rpD~p~Cdp~lG~~Sq~kyiWsP~P~rlr 203 (348)
T PHA03189 141 S--TSTAGMYECVLRNETHGLVLQRFVIVTDVETLRRPDEPCCDPALGRHSQGKYIWSPTPWRLR 203 (348)
T ss_pred E--ecccceEEEEeccccceeeeEEeeeeeehhhhcCCCCCCcCcccCccccCceeecCChhHhh
Confidence 4 488999999999964 66555555554554333 33433333334455666665554443
No 419
>PHA03281 envelope glycoprotein E; Provisional
Probab=79.63 E-value=60 Score=35.72 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=51.8
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|+|.+++..++|.|+--.....|...-+ .|.|+|+......-|.+ .|...
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~s--------vfLVtVkg~~~~rip~p--------------------~Vtpk 349 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYA--------TFLVKLKGDEENHIDLP--------------------AVTPK 349 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeE--------EEEEEecCCcccCCCCC--------------------Ccccc
Confidence 369999999999999998777655544442 34566664331111111 01111
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCc--CC---CeeEEe
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF--PR---PEISWM 543 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~--p~---~~v~W~ 543 (803)
+.. ..+...+-......+|+++.+....... .. .++.|+
T Consensus 350 ~hg--a~F~vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wy 393 (642)
T PHA03281 350 PKG--AEFHMWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWL 393 (642)
T ss_pred ccC--ceEEEeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEE
Confidence 111 1122222234566789988888876543 22 467897
No 420
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=79.51 E-value=34 Score=28.26 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=50.3
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
...|....|..|+++.+.|..+ -|.|. +-|.-. +.........+=..+.+.|++. | ..-.|.+.-.......+
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~---L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~ 80 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETS---LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSAS 80 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEES-SSS-SEEEEESS---SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEE
T ss_pred EEECCccEECCCCCEEEEEcCC-CCCCCcceEEEe---cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeE
Confidence 3456778888999999999985 33332 444321 2222222233456788889986 5 46679988754455667
Q ss_pred EEEEEeeee
Q psy2776 227 CTLLVQGKE 235 (803)
Q Consensus 227 ~~l~V~~~~ 235 (803)
++|+|...|
T Consensus 81 ~~ItVY~~P 89 (91)
T PF03921_consen 81 ANITVYKPP 89 (91)
T ss_dssp EEEEEEB--
T ss_pred EeeEEeCCC
Confidence 788887664
No 421
>KOG1026|consensus
Probab=79.10 E-value=0.36 Score=55.27 Aligned_cols=209 Identities=14% Similarity=0.027 Sum_probs=110.0
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE-ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.....+++..+.|.+.+.+...+.|.++...+....+.... ....+..|...+....+.|.+.|.+.+..-........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ 141 (774)
T KOG1026|consen 62 ITEIFIENGQLLCIVSGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELS 141 (774)
T ss_pred HHHHHHhhhhhcccccCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchhh
Confidence 33455788889999998887789999887655544221111 11123447777888888888998888765444443333
Q ss_pred EEeeeEeEeeecccc----cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCC
Q psy2776 597 QVLGYIIQQQEKNSL----KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQA 672 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~ 672 (803)
.+..++.. .... .|+... ... ....+.|...+..+.- .... +... ..
T Consensus 142 ~~~~~~~~---~~~~~~~~~~~e~~-~~~-------------~~~~~~c~~~~~~~~~-~~~~--~~~~---------~~ 192 (774)
T KOG1026|consen 142 LVGNPFTC---SCSIRWLDRYREDG-FCV-------------PYRGLACLNFLSNGTV-ANES--IQLC---------GE 192 (774)
T ss_pred hccCCCCc---chhhhHHhhhcccC-CCC-------------CchhhHHHhhcCCcee-hhhh--hhhh---------cc
Confidence 33322200 0001 111111 000 0001111111110000 0000 0000 00
Q ss_pred CeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 673 PLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 673 p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+..........+..|..+++.|.+.+.|.|...|+.++............-. .+.... -++.|.+.|..
T Consensus 193 ~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~----~~~~~~-------~~~~c~~E~~~ 261 (774)
T KOG1026|consen 193 IENRIRAANLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR----SECEVL-------ENDLCIAENAV 261 (774)
T ss_pred hhhhhhhhhhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc----ccceee-------echhhHHHHhh
Confidence 0000011134677899999999999999999999998776544322111100 111111 11999999999
Q ss_pred cceeeeEEEEEEee
Q psy2776 753 GSATHGARVTVDVE 766 (803)
Q Consensus 753 G~~~~~~~l~V~~~ 766 (803)
|....++.+.++.+
T Consensus 262 ~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 262 ARSNPSILLVVDLP 275 (774)
T ss_pred hhcCceeeeEEecc
Confidence 99998888888654
No 422
>PHA03052 Hypothetical protein; Provisional
Probab=76.18 E-value=11 Score=28.69 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=27.7
Q ss_pred ceeEEecCCeEEEEEEEeecC---CCceEEeeCCeecc
Q psy2776 680 EEKTVKEKGTIRLMAKVKASP---APSIVWFRNNKPLL 714 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p---~~~v~W~~~~~~l~ 714 (803)
...++..|.+++|.|++.-.+ .+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 456788899999999996333 34699999999884
No 423
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=74.53 E-value=36 Score=25.98 Aligned_cols=69 Identities=42% Similarity=0.733 Sum_probs=40.7
Q ss_pred EEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCc--eeEEEeeee--eeEEEEeccccCCeEEEEEEEEccCc
Q psy2776 52 IVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEF--MVWNKIETT--STTYEVTKLTTKHEYMFRVAAVNAIG 123 (803)
Q Consensus 52 ~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~l~i~~~~~~d~g~y~c~a~~~~g 123 (803)
+......++.|+|.+|...+. ..|.+........ -.|...... ...+.|.++.+...+.++..+.+..|
T Consensus 9 ~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 9 VTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred EEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence 333445589999997644432 2333322211111 124433332 46899999999999999988887544
No 424
>PHA03189 UL14 tegument protein; Provisional
Probab=72.96 E-value=33 Score=34.65 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=41.9
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeE-----Ee----------eCCeeecCCCcEEEEe-------cCCeEEEEE-eee
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEIS-----WM----------KNGAEITDSKACRIFI-------DEETSTIAI-YSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~-----W~----------~~g~~i~~~~~~~~~~-------~~~~~~L~i-~~v 571 (803)
.+.+..|+.+++.|.+... |...+. |. ..|..+.++...++.. .+-...|++ .++
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v 140 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRV 140 (348)
T ss_pred ccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEE
Confidence 4667889999999997643 443332 32 1233343332222221 111223333 366
Q ss_pred ccCcCeEEEEEEEcCCCC
Q psy2776 572 VRADTSTYTVTATNAAGS 589 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~ 589 (803)
..+-+|.|.|+..|....
T Consensus 141 ~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 141 STSTAGMYECVLRNETHG 158 (348)
T ss_pred EecccceEEEEeccccce
Confidence 678899999999998544
No 425
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=72.38 E-value=4.1 Score=45.33 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=25.2
Q ss_pred cEEEEEEECccCCCeeEEEEcCeeccceeEEE--ecCeeEEEEecCCC-CcceEEEEEEE-cCCcCeee--EEEEEEeee
Q psy2776 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFTVVNCSE-SSEGRYTCKAT-NEAGTAET--SCTLLVQGK 234 (803)
Q Consensus 161 ~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~L~i~~v~~-~d~G~Y~C~a~-n~~g~~~~--s~~l~V~~~ 234 (803)
.+.|.|... -...+.|..-........... ......|.|..... .-...|...+. ........ ++.|.|...
T Consensus 2 ~~~~~C~~~--~~~~y~W~~~~~~~~~~~~~~~~~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s 79 (440)
T PF02010_consen 2 HVSLNCNDA--STVTYNWTVFSGPSNSIVQDMDNSSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPS 79 (440)
T ss_dssp ----------------BEEEEES-TT-EEESTTT--SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE--
T ss_pred Ccccccccc--cceEEEEEEEecCCcCccccccccCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeec
Confidence 356789432 334688976432221111000 12346788888766 33456677777 22222333 444555443
No 426
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=71.18 E-value=1e+02 Score=29.85 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=70.4
Q ss_pred eeEEEEcCeeccceeEE------Eec---CeeEEEE-ecCCCCcceEEEEEEEcCCcCeeeEE-E----EEEeeeecccc
Q psy2776 175 DIKWYKDDSLIKGRNIT------YEN---NVARFTV-VNCSESSEGRYTCKATNEAGTAETSC-T----LLVQGKEIKES 239 (803)
Q Consensus 175 ~i~W~~~~~~~~~~~~~------~~~---~~~~L~i-~~v~~~d~G~Y~C~a~n~~g~~~~s~-~----l~V~~~~~~~~ 239 (803)
.+.|+.|+..+...... .++ ..++|.+ .+...+-.=..+|.+.-..+....+- . -.|..+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~----- 82 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPK----- 82 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecC-----
Confidence 47888888877643211 111 2345666 23334445578998886554332221 1 112222
Q ss_pred cceeEEeecceeeEEEeeeccCCCcceeEEEEEEeec-cccceeeccccccccceeeeeeccCCCccccccccCCceeee
Q psy2776 240 ARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSV-SKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLV 318 (803)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (803)
+...+ ....++-.|.+...+.. -.++|+.................-...|...-+.+ ....-
T Consensus 83 P~vsv---------------~F~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs--~~pls 145 (211)
T PF02124_consen 83 PRVSV---------------RFEDGYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRS--RRPLS 145 (211)
T ss_pred CEEEE---------------EecCCEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeec--ccCCC
Confidence 11111 23567778888888755 88899877765433333333222222222222211 11222
Q ss_pred ccccceeEEEEe-cCCc
Q psy2776 319 PHLGDATFQVEL-SSPD 334 (803)
Q Consensus 319 ~~g~~~~l~C~~-~~p~ 334 (803)
...+.+...|.+ |.|.
T Consensus 146 ~~~~~~~YtC~l~GYP~ 162 (211)
T PF02124_consen 146 DEDGPVEYTCRLIGYPD 162 (211)
T ss_pred ccCCceeEEEEEeeCCC
Confidence 345668999999 7764
No 427
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=71.04 E-value=5.8 Score=43.52 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=12.7
Q ss_pred eeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCC---CCCCe--eec----------cCcCeeeecCCc
Q psy2776 97 TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVD---AEAPV--IQE----------PLKDSVAGFQSS 161 (803)
Q Consensus 97 ~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~---~~~p~--i~~----------~~~~~~v~~G~~ 161 (803)
..+.|.|.+++..|+|.|.-...+..+...... ..+.+..+.. ..+|. +.. ........+|++
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~--~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdt 164 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSV--VFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDT 164 (439)
T ss_dssp -------------------------------------------------------------SEEEEEE--SEEE--TT--
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEE--EEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCc
Confidence 357799999999999999999886655433222 2233322111 11121 111 123344568998
Q ss_pred EEEEEEECc--cC-C---CeeEEEE
Q psy2776 162 VTLECVVSG--VP-T---PDIKWYK 180 (803)
Q Consensus 162 ~~L~C~~~g--~p-~---p~i~W~~ 180 (803)
+.|.-.+.. .. . .+|.|++
T Consensus 165 f~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 165 FHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EE---EEEEEESSS--EEEEEEEEE
T ss_pred EEEeEEEEeccCCCCCeeEEEEEEE
Confidence 888777653 22 2 2599985
No 428
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=71.02 E-value=14 Score=38.39 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=37.2
Q ss_pred ceeEEEEe-c--CCceeeEEeec---------C---eeccccceeE---------E--EEcC-ceeEEEEeecCCCCCcc
Q psy2776 323 DATFQVEL-S--SPDIQVKWLKK---------G---KEIKESARHI---------I--TSRG-TQRKLVIKRVTQDDETD 375 (803)
Q Consensus 323 ~~~l~C~~-~--~p~~~i~W~~~---------g---~~l~~~~~~~---------~--~~~~-~~~~l~i~~~~~~d~g~ 375 (803)
.++|.|.| | .....+.|.|+ | ..+.....+. + ..+| +.....--.+..++...
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~ 295 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ 295 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence 57999999 5 44688999999 4 1111111111 1 1142 44333333566667778
Q ss_pred EEEEEecccc
Q psy2776 376 IGVLALNVKS 385 (803)
Q Consensus 376 y~c~~~~~~~ 385 (803)
|+|.+....-
T Consensus 296 Y~C~V~Hsgl 305 (338)
T PHA02865 296 IVCVVFHSTL 305 (338)
T ss_pred cEEEEEeCCC
Confidence 9999988653
No 429
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=69.79 E-value=22 Score=29.38 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=42.3
Q ss_pred eeEEEEE-EcCcCCCeeEEeeC--CeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 525 QWKVEVK-YFGFPRPEISWMKN--GAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 525 ~v~l~C~-~~g~p~~~v~W~~~--g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.+.-.|. +.|.|++.|+|.-+ |.. ........+ .+.+.+-.....|.-.-+|++....-....++.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4567898 78999999999742 221 011110111 2456666667778889999999875555555555
Q ss_pred E
Q psy2776 597 Q 597 (803)
Q Consensus 597 ~ 597 (803)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
No 430
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=67.54 E-value=67 Score=26.26 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=34.8
Q ss_pred cEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 161 ~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
...|.+.+.+. .+.+.|+-|+..+.... ....+.+ .+...|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~-----~~~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ-----PGHQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC-----CCCeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 34444444443 34899999999883221 1122333 346789999999888886543
No 431
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=60.55 E-value=11 Score=41.98 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=20.0
Q ss_pred eEEEEEeeecc-CcCeEEEEEEE--cCC-CCeEEEEEEEEeeeE--------------------e---Eee--------e
Q psy2776 563 TSTIAIYSVVR-ADTSTYTVTAT--NAA-GSTSLDLSLQVLGYI--------------------I---QQQ--------E 607 (803)
Q Consensus 563 ~~~L~i~~v~~-~dsG~Y~C~a~--n~~-g~~s~s~~l~V~~~p--------------------~---~~~--------~ 607 (803)
...|.|..-.. .-...|...++ +.. ...+..+.|.|...+ + ... .
T Consensus 37 ~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~ 116 (440)
T PF02010_consen 37 TPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDS 116 (440)
T ss_dssp SSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred ceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCC
Confidence 35677776554 22335666666 222 224566667776655 0 000 2
Q ss_pred cccccEEEeeeeCC---------------ccceEEE--cccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 608 KNSLKFTKVATLDP---------------STLQYTV--ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 608 ~~~~~w~~~~~~~~---------------~~~~~~~--~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.-.+.|........ ....+++ ..+.+...|.|++.+..+.+............. .
T Consensus 117 ~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~--------~ 188 (440)
T PF02010_consen 117 GLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVS--------G 188 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEecc--------C
Confidence 34667887764332 1233444 557888889999999887763333322221111 1
Q ss_pred CCCeeEeccce---eEEecCCeEEEEEEEeecC----CCceEEee--------CCeeccCCCCeEEEeeCceEEEEEecC
Q psy2776 671 QAPLFIERFEE---KTVKEKGTIRLMAKVKASP----APSIVWFR--------NNKPLLSSPKKREIFDGENIILELKEA 735 (803)
Q Consensus 671 ~~p~~~~~~~~---~~v~~g~~v~L~C~~~g~p----~~~v~W~~--------~~~~l~~~~~~~~~~~~~~~~L~i~~v 735 (803)
.+|.+...... ..+..++.+.|...+.+.+ ...+.|.. ....+..... ..........|.|..-
T Consensus 189 ~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Lvi~~~ 267 (440)
T PF02010_consen 189 DPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSS-MTTTGSSSSNLVIDPG 267 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccc-cccccccccccccccc
Confidence 13333222221 2388888888887776543 24688987 1111110000 0011112334666654
Q ss_pred CCCCCceeEEE--EEEccCcce-eeeEEEEEEeeccCCCCCcccCCcc
Q psy2776 736 DSETDAGDYKV--VATNELGSA-THGARVTVDVEKVGRPSINSIDIDL 780 (803)
Q Consensus 736 ~~~~D~G~Y~C--~a~N~~G~~-~~~~~l~V~~~~~~pp~~~~~~~~~ 780 (803)
..+..+.|.. .|.+..|.. .+++.+.+ ..||..-.+.+.|
T Consensus 268 -~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~----n~pP~~g~c~v~P 310 (440)
T PF02010_consen 268 -VLEPGSTYTFRLTVTDSSGSSGSASISFTV----NAPPSGGSCSVSP 310 (440)
T ss_dssp ------------------------------------------------
T ss_pred -cccccccccccccccccccccccccccccc----ccccccccccccc
Confidence 3455566754 566655543 45555555 4566655555555
No 432
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=59.55 E-value=38 Score=26.08 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=36.6
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeE--EEEEEccCccee
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY--KVVATNELGSAT 756 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y--~C~a~N~~G~~~ 756 (803)
.+..|+.+.|...........+.|.+++.. ....+...+... ...|.| +..|.|..|..+
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~--------~~~~~~~~t~ty------~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNG--------TVSTGSSVTHTY------SSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SSES--------EEECSSEEEEEE------SSSEEEEEEEEEEETTSEEE
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECCCC--------ccccCCCEEEEc------CCCeEEEEEEEEEECCCCcC
Confidence 466799999998873333447999998811 112233333333 346888 566778888764
No 433
>KOG0200|consensus
Probab=57.92 E-value=54 Score=38.16 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=30.4
Q ss_pred eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 724 DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 724 ~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.....+.+.++ +..++|.|.|.+.+..+.......+.+
T Consensus 113 ~~~~~~~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (609)
T KOG0200|consen 113 DGTFESGLIYNV-SLTEAGEYLCWTGRTVGDGPNKAFLEV 151 (609)
T ss_pred cCceEeeeeecc-ChhhcceeeccCCCcccccccceEEec
Confidence 446678999999 789999999999986666665555554
No 434
>PHA03112 IL-18 binding protein; Provisional
Probab=56.09 E-value=19 Score=32.14 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=21.6
Q ss_pred EecCCeEEEEEEEeec-CC-CceEEeeCC
Q psy2776 684 VKEKGTIRLMAKVKAS-PA-PSIVWFRNN 710 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~-p~-~~v~W~~~~ 710 (803)
..+|+++.|+|.+-+. |. .-+.|.+++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4569999999999865 65 468899876
No 435
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=53.02 E-value=1.3e+02 Score=24.87 Aligned_cols=78 Identities=9% Similarity=-0.057 Sum_probs=46.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+..|+.+.+.|..+...+..+.|.-.- .+........=....|.|++. | ..-.|.+.-.......++.|
T Consensus 12 ~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~I 83 (91)
T PF03921_consen 12 EPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASANI 83 (91)
T ss_dssp EEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEEE
T ss_pred ccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEee
Confidence 567888999999999864333344554211 111111112234677888885 4 57789998754456778888
Q ss_pred EEeeeE
Q psy2776 597 QVLGYI 602 (803)
Q Consensus 597 ~V~~~p 602 (803)
.|..+|
T Consensus 84 tVY~~P 89 (91)
T PF03921_consen 84 TVYKPP 89 (91)
T ss_dssp EEEB--
T ss_pred EEeCCC
Confidence 887665
No 436
>COG5475 Uncharacterized small protein [Function unknown]
Probab=52.95 E-value=26 Score=25.33 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=29.0
Q ss_pred eeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 413 GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 413 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
++.+++.++.-.++|...+.+ |.|.|...+..|....
T Consensus 8 gdvV~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 8 GDVVTLKSGGPRMTVSGYSSD--GMYECRWFDGYGVKRE 44 (60)
T ss_pred CcEEEeecCCceEEEeccccC--CeEEEEEecCCCcccc
Confidence 556777788888888877665 9999999998875444
No 437
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=52.54 E-value=1.1e+02 Score=23.98 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=38.0
Q ss_pred cCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeE--EEEEEccCcceeeeEEEE
Q psy2776 686 EKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDY--KVVATNELGSATHGARVT 762 (803)
Q Consensus 686 ~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y--~C~a~N~~G~~~~~~~l~ 762 (803)
.+..+.|.+...+ .....+.|.+++..... +..... .....|.| +..+.|..|+.+..+.+.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~---------~~~~~~------~y~~~G~y~v~l~v~n~~g~~~~~~~i~ 77 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSST---------GPTVTH------TYTKPGTYTVTLTVTNAVGSASATVTVV 77 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccC---------CCCEEE------EeCCCcEEEEEEEEEcCCCcEEEEEEEE
Confidence 5788899988765 23457889886542211 121122 23456887 456789999666555555
Q ss_pred E
Q psy2776 763 V 763 (803)
Q Consensus 763 V 763 (803)
|
T Consensus 78 v 78 (79)
T smart00089 78 V 78 (79)
T ss_pred E
Confidence 4
No 438
>PHA03112 IL-18 binding protein; Provisional
Probab=51.47 E-value=54 Score=29.35 Aligned_cols=72 Identities=14% Similarity=0.264 Sum_probs=44.2
Q ss_pred eecceeEEEEEEcCc-CC-CeeEEeeCC-eeecCC-------------CcEEEEecCCeEEEEEeeeccC-cCeEEEEEE
Q psy2776 521 SVKSQWKVEVKYFGF-PR-PEISWMKNG-AEITDS-------------KACRIFIDEETSTIAIYSVVRA-DTSTYTVTA 583 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~-~~v~W~~~g-~~i~~~-------------~~~~~~~~~~~~~L~i~~v~~~-dsG~Y~C~a 583 (803)
.+++++.|+|..-+. |. .-+.|.+++ ..+.+. .+.+-...+-...|.+.+++.+ +.-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 558999999998765 55 457899765 333211 1111111122457888888754 344899998
Q ss_pred EcCCCCeEE
Q psy2776 584 TNAAGSTSL 592 (803)
Q Consensus 584 ~n~~g~~s~ 592 (803)
....|....
T Consensus 116 ~D~~~~~k~ 124 (141)
T PHA03112 116 MDLDGPIKK 124 (141)
T ss_pred ecCCchhhH
Confidence 877665443
No 439
>PHA03240 envelope glycoprotein M; Provisional
Probab=49.51 E-value=20 Score=33.97 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=44.3
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEee-------C-Ce---ecc---C------------CCCeEEEeeCceEEEEEecC
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFR-------N-NK---PLL---S------------SPKKREIFDGENIILELKEA 735 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~-------~-~~---~l~---~------------~~~~~~~~~~~~~~L~i~~v 735 (803)
+.+.+|++|+|--.---.|.-.+.|++ + |. +|- . .....+...-.+++|.|-.+
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 567789999987433224666899998 2 11 111 0 11233445556788999999
Q ss_pred CCCCCceeEEEEEEccCcc
Q psy2776 736 DSETDAGDYKVVATNELGS 754 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N~~G~ 754 (803)
...|+|+|.-.--...|.
T Consensus 113 -n~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 113 -NLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred -eecCcchhhhccCCCCCC
Confidence 689999994433333444
No 440
>PHA03052 Hypothetical protein; Provisional
Probab=48.85 E-value=38 Score=25.87 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=26.9
Q ss_pred CceeeeccccceeEEEEe--c--CCceeeEEeecCeecc
Q psy2776 313 PSVTLVPHLGDATFQVEL--S--SPDIQVKWLKKGKEIK 347 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~--~--~p~~~i~W~~~g~~l~ 347 (803)
|....+..|..++|.|.+ + ...+.+.|.-|+..+.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 345566779999999998 4 3367888999987774
No 441
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=48.78 E-value=5e+02 Score=30.30 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=43.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeE-Ee-eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE--cCCCC----
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEIS-WM-KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT--NAAGS---- 589 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~-W~-~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~--n~~g~---- 589 (803)
.....|+++.+.|.+.|--...+. |. ++|..+... .+ .....+. ..+.-+|.|+..+. +....
T Consensus 396 ~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~-~Y-----~~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD 466 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI-DY-----GKNNWVN---FIPEEKGNYELEVRVKDKYSDKEYD 466 (667)
T ss_pred CceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe-ec-----ccccEEE---EEECCCeeEEEEEEEecccCchhcc
Confidence 456779999999999876555554 33 467666531 00 0122333 34478999998664 33222
Q ss_pred eEEEEEEEEee
Q psy2776 590 TSLDLSLQVLG 600 (803)
Q Consensus 590 ~s~s~~l~V~~ 600 (803)
....+.+.|..
T Consensus 467 ~~k~v~l~V~e 477 (667)
T PRK14081 467 AHTIVYIKVHE 477 (667)
T ss_pred cceEEEEEEec
Confidence 34555666654
No 442
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=47.29 E-value=48 Score=27.44 Aligned_cols=67 Identities=24% Similarity=0.492 Sum_probs=39.8
Q ss_pred cEEEEEE-ECccCCCeeEEEEcCeeccce-eEEE-ec--C----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEE
Q psy2776 161 SVTLECV-VSGVPTPDIKWYKDDSLIKGR-NITY-EN--N----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230 (803)
Q Consensus 161 ~~~L~C~-~~g~p~p~i~W~~~~~~~~~~-~~~~-~~--~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 230 (803)
.+.=.|. +.|.|++.|.|.-+ +... ..+. .+ + ...+.+-.....|.-..+|++....-....++.|.
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 3455899 45899999999742 2111 1111 01 0 23455666677888889999998644444444443
No 443
>PHA03282 envelope glycoprotein E; Provisional
Probab=47.16 E-value=35 Score=36.70 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=25.9
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCCCC--ceeeEEEEE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNALGQ--ASATTKVTL 40 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~--~~~~~~l~V 40 (803)
+.+|.|.+++.+|+|.|...+...-.. +...+.|.|
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 567999999999999999997544333 233344444
No 444
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=42.30 E-value=37 Score=25.68 Aligned_cols=44 Identities=23% Similarity=0.399 Sum_probs=27.6
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|+|..... ..+.||.||..+.. .... +|.+..+ .++++|+-..
T Consensus 2 tltC~s~~s--LPiswYcN~TRLlR-------lt~~--Tlt~~~l-----tcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLLR-------LTQQ--TLTVVTL-----TCNFTCVGQS 45 (71)
T ss_pred ceecCCCCC--CcccEEECCceeee-------ecCC--eEeeeee-----eEEeeecCCC
Confidence 478877543 34889999886621 1122 4666554 3899998654
No 445
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=38.92 E-value=1e+02 Score=24.16 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=27.0
Q ss_pred CccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 621 PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.....+.+.+|.+...|.++++|.+..|.+..+
T Consensus 54 ~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s 86 (93)
T cd00063 54 GSETSYTLTGLKPGTEYEFRVRAVNGGGESPPS 86 (93)
T ss_pred CcccEEEEccccCCCEEEEEEEEECCCccCCCc
Confidence 455678899999999999999999887766433
No 446
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.11 E-value=83 Score=23.96 Aligned_cols=21 Identities=19% Similarity=0.667 Sum_probs=14.8
Q ss_pred EecCCeEEEEEEEeecCCCceEEee
Q psy2776 684 VKEKGTIRLMAKVKASPAPSIVWFR 708 (803)
Q Consensus 684 v~~g~~v~L~C~~~g~p~~~v~W~~ 708 (803)
|..|++++|. |-|...|.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567787775 55556899984
No 447
>PHA03240 envelope glycoprotein M; Provisional
Probab=36.65 E-value=46 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=22.0
Q ss_pred EecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 192 YENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 192 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
+.=.+.+|.|-++..+|.|+|.-.--...|..
T Consensus 100 y~C~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 100 YECHNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred EEeccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 33346789999999999999954333334443
No 448
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=35.51 E-value=2.2e+02 Score=22.31 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=36.4
Q ss_pred ecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE--EcCCCCeEEEEEEEE
Q psy2776 522 VKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA--TNAAGSTSLDLSLQV 598 (803)
Q Consensus 522 ~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a--~n~~g~~s~s~~l~V 598 (803)
.+..+.|.....+ .....+.|...+.....+. . ........|.|+..+ .|..|..+....+.|
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~---------~-----~~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGP---------T-----VTHTYTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCC---------C-----EEEEeCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 5778888887655 2345777876443211111 1 122345778887554 677786666666554
No 449
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=35.50 E-value=2e+02 Score=22.04 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=38.1
Q ss_pred ceEEeeCCeeccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 703 SIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 703 ~v~W~~~~~~l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
...|+++++.+.. +.+.. .+...+..-+.. ...+.|...+.+....|.....+.+.|
T Consensus 8 ~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~-~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVAR---IPLPISGGRWRTWSSKQN-FPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEE---EEEeccCCCEEEEEEeec-CCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4679999987632 22222 222333444444 357889999999999999888877776
No 450
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=33.78 E-value=1.9e+02 Score=22.87 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.5
Q ss_pred CCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEE
Q psy2776 620 DPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLM 693 (803)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~ 693 (803)
.+...+|.-.+|.....|.|+++|.-..+.- .+.....+.++.|+.+++.
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~------------------------~~t~~~~V~vrAGd~~~v~ 74 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTAEYDRDGR------------------------ILTRTRTVVVRAGDTVTVD 74 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEEEEecCCc------------------------EEEEEEEEEEcCCceEEee
Confidence 4456788899999999999999996554432 2334456678888888764
No 451
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=33.09 E-value=1.5e+02 Score=22.65 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=33.9
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCC-eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE--EcCCCCe
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNG-AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA--TNAAGST 590 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g-~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a--~n~~g~~ 590 (803)
..+..|+.+.|...........+.|..++ .....+... .......|.|...+ .|..|..
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~--------------t~ty~~~G~y~V~ltv~n~~g~~ 67 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSV--------------THTYSSPGTYTVTLTVTNGVGSA 67 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEE--------------EEEESSSEEEEEEEEEEETTSEE
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCE--------------EEEcCCCeEEEEEEEEEECCCCc
Confidence 44677899999887733344678899887 222222211 12234578887644 5666544
No 452
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=31.95 E-value=2.4e+02 Score=21.69 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=39.4
Q ss_pred eeEEEEcCeeccceeEEEec-CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 175 DIKWYKDDSLIKGRNITYEN-NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 175 ~i~W~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
...|++++..+..-.+...+ .-.+..-+.+.+.+.|.+++.+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 46799999877644433332 2344555566678999999999999988766665554
No 453
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=31.71 E-value=1e+02 Score=23.29 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=22.4
Q ss_pred cceEEEcccccCceeEEEEEEecCCC
Q psy2776 623 TLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
...+.+.+|.+...|.++++|.+..|
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEEcccC
Confidence 35788899999999999999998755
No 454
>KOG0200|consensus
Probab=30.45 E-value=2.5e+02 Score=32.75 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=62.0
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCee-eccCcCeeeecCCcEEEEEEECccCCCee
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVI-QEPLKDSVAGFQSSVTLECVVSGVPTPDI 176 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i-~~~~~~~~v~~G~~~~L~C~~~g~p~p~i 176 (803)
...+.+..+...+.|.|.|.+.+ +. . . ....... ...+.+ ...+.......+....+ +...+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~--~~----~-~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 78 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN--IN----L-I--ISLDDIV-IHRPILLAGENANPNTVVTVGVPL---AFSIPQPFI 78 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec--Cc----e-e--eEeeccc-CcccccccCCCCCcceeeccccee---eeecCCCcc
Confidence 56788888999999999999988 11 1 1 1111111 111212 22233444445556665 223335667
Q ss_pred EEEEcCeec-----cc--------------eeEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 177 KWYKDDSLI-----KG--------------RNITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 177 ~W~~~~~~~-----~~--------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.|....... .. .+.. ......+.+.|+...+.|.|.|...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 79 KWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeeeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCC
Confidence 786644211 00 0111 33556789999999999999998876
No 455
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=26.41 E-value=1.9e+02 Score=22.07 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=28.3
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeC---C--eeecCCCcEE---EEecCCeEEEEEeeeccCcCe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKN---G--AEITDSKACR---IFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~---g--~~i~~~~~~~---~~~~~~~~~L~i~~v~~~dsG 577 (803)
|..|.+++|. |-+...+.|+|- + ..+=...... +...-.+..|+|.+|...++|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 4557777773 434467999831 1 2222222211 112223456888888777665
No 456
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=25.90 E-value=1.1e+03 Score=27.55 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=40.6
Q ss_pred EEeecceeEEEEEEcCcCCCeeE--EeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE--cCCCC----e
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEIS--WMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT--NAAGS----T 590 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~--W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~--n~~g~----~ 590 (803)
....|+.+++.|..++.....+. -+.+|+-+... . .. ....+.+. +.-+|.|+..+- |.... .
T Consensus 493 ~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t-~---Ys--~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~ 563 (667)
T PRK14081 493 YYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET-D---YI--KNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDS 563 (667)
T ss_pred cEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe-e---cc--ccceEEEe---ecCCceEEEEEEEccccccccccc
Confidence 46789999999999886555444 33456544221 0 00 11223333 567899998764 43322 3
Q ss_pred EEEEEEEEee
Q psy2776 591 SLDLSLQVLG 600 (803)
Q Consensus 591 s~s~~l~V~~ 600 (803)
...+.+.|..
T Consensus 564 ~k~v~~~V~e 573 (667)
T PRK14081 564 KKEVKFYVRE 573 (667)
T ss_pred ceEEEEEEcC
Confidence 3455555554
No 457
>COG5475 Uncharacterized small protein [Function unknown]
Probab=22.32 E-value=3.2e+02 Score=20.04 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=20.7
Q ss_pred EEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 729 ILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 729 ~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.++|... + -.|.|.|.=-|.+|.....+
T Consensus 19 ~Mtvs~~-s--s~Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 19 RMTVSGY-S--SDGMYECRWFDGYGVKREAF 46 (60)
T ss_pred eEEEecc-c--cCCeEEEEEecCCCcccccc
Confidence 5777766 3 23999999999999765444
No 458
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.26 E-value=1.1e+03 Score=26.31 Aligned_cols=101 Identities=8% Similarity=0.085 Sum_probs=48.5
Q ss_pred eeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeE--Ee-eCCeeecCCCcEEEEecCCeEEEEEee
Q psy2776 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEIS--WM-KNGAEITDSKACRIFIDEETSTIAIYS 570 (803)
Q Consensus 494 ~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~--W~-~~g~~i~~~~~~~~~~~~~~~~L~i~~ 570 (803)
.+++.+...+..|...+..+.+.......+..++|.-.+.......++ -+ +++..+.. ....+.......+|.+.+
T Consensus 297 ~vei~~~~~~p~p~~~lsVsGL~~eY~I~dG~~~i~ftv~a~g~~~vta~V~d~~g~~~~~-~~~~v~d~s~~vtL~Ls~ 375 (478)
T PRK13211 297 RVEIGYDIEAPAPDYELEVSGLAKEYKIGDGAATLDFTVTATGDMNVEATVYNHDGEALGS-KSQTVNDGSQSVSLDLSK 375 (478)
T ss_pred EEEEEEEecCCCCCCceEEecCcceeEEcCCcEEEEEEEEeccceEEEEEEEcCCCCeeee-eeEEecCCceeEEEeccc
Confidence 444444432223344444555555555556666666665555454443 32 23333322 122222111223555555
Q ss_pred eccCcCeEEEEEEE--cCCCCeE--EEEEEEE
Q psy2776 571 VVRADTSTYTVTAT--NAAGSTS--LDLSLQV 598 (803)
Q Consensus 571 v~~~dsG~Y~C~a~--n~~g~~s--~s~~l~V 598 (803)
++ .|.|..+++ +..|... .++.|.|
T Consensus 376 ~~---AG~y~Lvv~~t~~dG~~~~q~~~~~~v 404 (478)
T PRK13211 376 LK---AGHHMLVVKAKPKDGELIKQQTLDFML 404 (478)
T ss_pred CC---CceEEEEEEEEeCCCceeeeeeEEEEE
Confidence 54 799988775 5566654 4455555
No 459
>KOG4802|consensus
Probab=20.94 E-value=6.5e+02 Score=27.13 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred eEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 603 IQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
+...+.....|+........ ..+.+.++.|..=|.||+.|+|..|....+..
T Consensus 189 ~hase~~~thwQtv~~t~~e-~~~~~t~~rPgRwyefrvaavn~~G~rGFs~P 240 (516)
T KOG4802|consen 189 FHASELGPTHWQTVEKTMEE-NTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEP 240 (516)
T ss_pred ccccccccccceeeeecCCC-ceeeeeecCcceeEEEEEeeeecccccccCCC
Confidence 44556667777776544433 48889999999999999999999988765544
Done!