Query psy2776
Match_columns 803
No_of_seqs 203 out of 2498
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 16:36:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 2.1E-59 7.1E-64 539.7 57.5 502 3-764 58-569 (570)
2 3dmk_A DOWN syndrome cell adhe 100.0 1E-56 3.6E-61 540.8 47.4 606 4-764 92-808 (816)
3 1e07_A Carcinoembryonic antige 100.0 4.6E-55 1.6E-59 512.0 58.8 536 5-766 70-641 (642)
4 3b43_A Titin; I-SET IG fold, e 100.0 6.7E-54 2.3E-58 493.7 55.1 461 142-791 3-505 (570)
5 3v2a_R Vascular endothelial gr 100.0 1.1E-52 3.7E-57 503.1 16.1 560 5-769 85-760 (772)
6 1e07_A Carcinoembryonic antige 100.0 3.1E-48 1.1E-52 454.1 53.5 461 98-766 70-558 (642)
7 3dmk_A DOWN syndrome cell adhe 100.0 9.7E-49 3.3E-53 471.4 46.5 596 52-792 49-743 (816)
8 2ec8_A MAST/stem cell growth f 100.0 1.9E-45 6.5E-50 419.6 35.0 471 24-768 17-513 (524)
9 2ocw_A Polymeric-immunoglobuli 100.0 1.9E-42 6.4E-47 400.6 49.0 415 99-767 75-548 (585)
10 3qs9_E FL cytokine receptor; i 100.0 3.8E-43 1.3E-47 397.1 32.6 436 51-764 57-509 (527)
11 3qs7_E FL cytokine receptor; i 100.0 2.9E-42 1E-46 379.7 34.8 393 108-769 4-418 (423)
12 3kld_A Contactin 4, axcam, BIG 100.0 1.4E-42 4.9E-47 379.1 31.2 368 143-764 4-382 (384)
13 3laf_A Deleted in colorectal c 100.0 5.3E-42 1.8E-46 377.3 32.9 368 142-765 19-401 (403)
14 1z7z_I Intercellular adhesion 100.0 4.3E-41 1.5E-45 375.9 35.3 417 51-764 8-448 (450)
15 3p3y_A Neurofascin; IG domains 100.0 1.9E-41 6.7E-46 372.9 30.6 375 142-764 14-402 (404)
16 1bih_A Hemolin; insect immunit 100.0 5E-41 1.7E-45 368.5 33.2 371 142-763 4-394 (395)
17 2ec8_A MAST/stem cell growth f 100.0 7.4E-41 2.5E-45 381.6 35.4 379 142-791 34-434 (524)
18 3v2a_R Vascular endothelial gr 100.0 5E-43 1.7E-47 419.3 16.0 512 51-763 40-661 (772)
19 2rcj_C Light chain; immunoglob 100.0 1.6E-39 5.4E-44 370.6 44.0 412 98-754 69-513 (523)
20 1cs6_A Axonin-1; neural cell a 100.0 5.3E-41 1.8E-45 366.6 30.3 367 143-764 3-381 (382)
21 2v5m_A Dscam; neurobiology SPL 100.0 1.8E-40 6.1E-45 363.2 31.1 358 144-763 3-387 (388)
22 3qs9_E FL cytokine receptor; i 100.0 3.4E-40 1.2E-44 373.0 30.5 368 153-792 57-436 (527)
23 2rcj_C Light chain; immunoglob 100.0 1.7E-37 5.8E-42 353.8 36.7 372 151-762 7-417 (523)
24 2ocw_A Polymeric-immunoglobuli 100.0 8.5E-37 2.9E-41 353.1 42.4 410 4-602 73-548 (585)
25 2rik_A Titin; I-SET IG fold, p 100.0 1.3E-35 4.4E-40 309.7 34.6 274 310-764 9-283 (284)
26 1z7z_I Intercellular adhesion 100.0 8.9E-37 3.1E-41 340.9 26.5 372 148-792 3-399 (450)
27 1wio_A CD4, T-cell surface gly 100.0 6.9E-37 2.4E-41 331.5 24.0 310 154-763 4-361 (363)
28 1qgc_4 Protein (immunoglobulin 100.0 5.8E-36 2E-40 333.1 29.4 375 147-762 4-436 (438)
29 3laf_A Deleted in colorectal c 100.0 1.3E-35 4.6E-40 326.2 28.3 364 51-602 30-403 (403)
30 2rik_A Titin; I-SET IG fold, p 100.0 4.9E-34 1.7E-38 297.7 35.8 277 142-599 3-283 (284)
31 3qs7_E FL cytokine receptor; i 100.0 5.8E-35 2E-39 321.5 27.6 389 14-602 3-416 (423)
32 3kld_A Contactin 4, axcam, BIG 100.0 2.3E-34 7.9E-39 314.0 26.2 355 55-600 21-383 (384)
33 1bih_A Hemolin; insect immunit 100.0 1.4E-33 4.9E-38 309.1 24.8 378 40-598 3-394 (395)
34 1cs6_A Axonin-1; neural cell a 100.0 4.3E-33 1.5E-37 303.9 24.7 351 55-599 20-381 (382)
35 2yd9_A Receptor-type tyrosine- 100.0 1.7E-32 5.9E-37 289.1 26.0 281 306-766 7-292 (304)
36 2y25_A Myomesin; structural pr 100.0 8E-33 2.7E-37 293.4 22.4 295 305-765 7-315 (317)
37 3p3y_A Neurofascin; IG domains 100.0 4.4E-33 1.5E-37 306.1 20.8 361 53-600 28-403 (404)
38 2v5m_A Dscam; neurobiology SPL 100.0 2.2E-32 7.7E-37 298.9 25.7 353 51-598 13-387 (388)
39 1igt_B IGG2A intact antibody - 100.0 6.7E-32 2.3E-36 300.7 26.2 377 151-754 7-434 (444)
40 2wim_A N-CAM 2, NCAM2, neural 100.0 2E-31 6.8E-36 278.9 26.3 266 313-765 11-284 (291)
41 2yd9_A Receptor-type tyrosine- 100.0 1.5E-31 5E-36 282.0 25.3 283 142-602 4-293 (304)
42 1hzh_H IGG, immunoglobulin hea 100.0 2.1E-31 7.3E-36 297.8 27.2 375 151-755 7-444 (457)
43 1qz1_A Neural cell adhesion mo 100.0 3.9E-31 1.3E-35 276.7 26.8 269 313-764 9-289 (291)
44 2y23_A Myomesin; structural pr 100.0 6.9E-31 2.4E-35 277.7 27.9 295 315-764 10-311 (312)
45 2y25_A Myomesin; structural pr 100.0 1.9E-31 6.4E-36 282.8 22.9 298 142-601 5-316 (317)
46 1qz1_A Neural cell adhesion mo 100.0 3.6E-31 1.2E-35 276.9 23.7 278 144-600 2-290 (291)
47 1igy_B IGG1 intact antibody MA 100.0 1.4E-32 4.7E-37 305.3 8.9 373 151-754 6-424 (434)
48 1iga_A IGA1; immunoglobulin; N 100.0 2E-29 6.7E-34 283.2 34.3 381 150-755 7-444 (475)
49 2wim_A N-CAM 2, NCAM2, neural 100.0 1.5E-30 5.2E-35 272.2 22.8 276 143-602 3-286 (291)
50 1wio_A CD4, T-cell surface gly 100.0 2.8E-30 9.5E-35 279.5 23.0 287 98-599 66-362 (363)
51 1qgc_4 Protein (immunoglobulin 100.0 1.9E-29 6.3E-34 280.5 28.6 338 98-597 74-436 (438)
52 1ry7_B FGFR-3, fibroblast grow 100.0 2.3E-31 7.8E-36 284.5 10.8 295 313-764 15-326 (334)
53 2o26_X MAST/stem cell growth f 100.0 2.2E-29 7.4E-34 263.4 24.1 266 142-602 10-290 (290)
54 2o26_X MAST/stem cell growth f 100.0 3.6E-29 1.2E-33 261.7 23.1 260 311-765 17-288 (290)
55 2jll_A NCAM2, neural cell adhe 100.0 1.1E-27 3.6E-32 261.8 34.8 323 144-654 1-379 (389)
56 1itb_B Type 1 interleukin-1 re 100.0 1.5E-29 5.1E-34 268.0 19.2 273 315-764 14-313 (315)
57 2y23_A Myomesin; structural pr 100.0 1.6E-28 5.6E-33 259.4 26.3 295 153-599 10-311 (312)
58 4fqp_A Poliovirus receptor; im 100.0 9.5E-29 3.3E-33 261.6 24.3 223 421-772 77-308 (313)
59 3oq3_B IFN-alpha/beta binding 100.0 7.2E-29 2.5E-33 264.5 23.1 263 315-764 38-329 (329)
60 3ejj_X Macrophage colony-stimu 100.0 1.2E-28 4E-33 257.5 24.3 225 422-764 50-280 (289)
61 4dep_C Interleukin-1 receptor 100.0 1.2E-29 4E-34 273.1 16.5 228 424-765 80-333 (349)
62 3o4o_C Interleukin-1 receptor 100.0 5.9E-30 2E-34 274.1 12.3 274 312-764 24-334 (339)
63 1zvo_C Myeloma immunoglobulin 100.0 6.6E-27 2.3E-31 264.4 36.2 177 518-765 307-503 (512)
64 4fqp_A Poliovirus receptor; im 100.0 1.6E-28 5.5E-33 259.8 20.7 271 150-602 6-306 (313)
65 3ejj_X Macrophage colony-stimu 100.0 6.9E-28 2.4E-32 251.6 24.7 273 143-602 3-283 (289)
66 1itb_B Type 1 interleukin-1 re 100.0 6.4E-29 2.2E-33 263.1 16.4 270 152-600 13-314 (315)
67 1ry7_B FGFR-3, fibroblast grow 100.0 1.4E-29 4.7E-34 270.7 11.1 295 151-602 15-329 (334)
68 3rjd_A High affinity immunoglo 100.0 3.5E-28 1.2E-32 249.9 21.1 243 313-764 8-259 (262)
69 4fom_A Poliovirus receptor-rel 100.0 5.8E-29 2E-33 262.6 14.8 269 153-602 8-302 (308)
70 4dep_C Interleukin-1 receptor 100.0 1.2E-28 4.1E-33 265.1 16.4 274 151-600 14-333 (349)
71 4fom_A Poliovirus receptor-rel 100.0 9.9E-29 3.4E-33 260.8 13.9 220 421-765 72-300 (308)
72 2wng_A Tyrosine-protein phosph 100.0 2.9E-28 1E-32 259.5 17.2 290 310-763 7-318 (327)
73 3rjd_A High affinity immunoglo 100.0 2.2E-27 7.6E-32 243.9 23.0 240 145-590 2-249 (262)
74 3oq3_B IFN-alpha/beta binding 100.0 9.3E-28 3.2E-32 255.8 20.3 268 152-598 37-328 (329)
75 4dkd_C Macrophage colony-stimu 100.0 1.1E-27 3.8E-32 250.5 19.6 228 422-768 50-284 (292)
76 3o4o_C Interleukin-1 receptor 100.0 5.7E-29 1.9E-33 266.5 9.8 285 142-600 16-335 (339)
77 3u83_A Poliovirus receptor-rel 100.0 8.6E-28 2.9E-32 256.3 18.4 221 421-767 90-322 (331)
78 3mjg_X Beta-type platelet-deri 100.0 3.9E-27 1.3E-31 246.0 22.8 267 146-602 2-280 (289)
79 2oz4_A Intercellular adhesion 100.0 3.4E-27 1.2E-31 243.1 21.8 237 317-764 14-263 (265)
80 1igt_B IGG2A intact antibody - 99.9 4E-27 1.4E-31 262.1 22.7 329 98-588 78-433 (444)
81 2wng_A Tyrosine-protein phosph 99.9 5E-27 1.7E-31 250.0 22.4 280 145-598 4-318 (327)
82 3mjg_X Beta-type platelet-deri 99.9 1.9E-26 6.6E-31 240.7 24.3 225 423-768 51-281 (289)
83 3vh8_G Killer cell immunoglobu 99.9 2.7E-27 9.2E-32 250.8 17.8 279 303-765 22-313 (316)
84 1hzh_H IGG, immunoglobulin hea 99.9 8E-27 2.7E-31 260.6 22.6 131 98-231 78-227 (457)
85 4dkd_C Macrophage colony-stimu 99.9 1.2E-27 4E-32 250.4 14.4 274 143-602 3-283 (292)
86 3u83_A Poliovirus receptor-rel 99.9 8.8E-27 3E-31 248.5 20.2 275 145-602 15-322 (331)
87 3vh8_G Killer cell immunoglobu 99.9 1E-26 3.4E-31 246.4 19.1 283 142-602 22-315 (316)
88 2nzi_A Titin; IG-domain, FNIII 99.9 1.8E-26 6.1E-31 243.0 19.3 286 313-774 11-299 (305)
89 2jll_A NCAM2, neural cell adhe 99.9 1.5E-24 5.2E-29 236.7 34.8 320 316-758 10-378 (389)
90 2oz4_A Intercellular adhesion 99.9 4E-26 1.4E-30 235.1 20.5 252 142-600 4-264 (265)
91 2a38_A Titin; Z1Z2, structural 99.9 4.8E-25 1.7E-29 215.2 23.8 180 516-764 13-194 (194)
92 1iga_A IGA1; immunoglobulin; N 99.9 3.5E-24 1.2E-28 240.4 33.2 331 98-589 79-443 (475)
93 1igy_B IGG1 intact antibody MA 99.9 2.9E-27 1E-31 262.3 7.6 325 98-589 77-424 (434)
94 2nzi_A Titin; IG-domain, FNIII 99.9 7.9E-25 2.7E-29 230.4 25.2 265 143-591 3-281 (305)
95 2j8h_A Titin, connectin; cardi 99.9 3.2E-24 1.1E-28 210.0 23.3 182 516-764 12-196 (197)
96 2wv3_A Neuroplastin; igcam, me 99.9 3.9E-24 1.3E-28 208.1 23.3 170 518-765 12-190 (190)
97 3lcy_A Titin; A-BAND, IG tande 99.9 1E-23 3.5E-28 206.1 25.0 180 516-764 15-195 (197)
98 3rbs_A Myomesin-1; immunoglobu 99.9 3.9E-24 1.3E-28 210.7 22.0 189 517-763 11-205 (207)
99 4fa8_A Secreted protein BARF1; 99.9 5.5E-25 1.9E-29 215.6 15.0 169 517-757 2-194 (203)
100 2yd6_A PTPRD protein; hydrolas 99.9 1.1E-23 3.8E-28 208.9 24.7 186 516-766 14-205 (212)
101 2yd1_A Tyrosine-protein phosph 99.9 1.1E-23 3.9E-28 208.8 23.9 186 516-769 14-204 (212)
102 2wqr_A IG epsilon chain C regi 99.9 2.9E-24 9.8E-29 228.1 17.9 218 424-754 73-309 (323)
103 2r15_A Myomesin-1; sarcomeric 99.9 4E-23 1.4E-27 204.7 23.2 194 521-765 15-210 (212)
104 2v44_A NCAM2, neural cell adhe 99.9 3.3E-23 1.1E-27 201.3 21.6 173 517-765 11-187 (189)
105 1za6_B IGG heavy chain; immuno 99.9 5.5E-24 1.9E-28 228.1 17.0 242 421-756 77-332 (344)
106 2va4_A NCAM2, N-CAM 2, neural 99.9 4.2E-23 1.4E-27 201.0 21.7 173 517-764 13-192 (192)
107 1zvo_C Myeloma immunoglobulin 99.9 9.7E-22 3.3E-26 222.0 35.9 374 98-599 79-504 (512)
108 2iep_A Muscle-specific kinase 99.9 3.7E-23 1.3E-27 201.4 20.1 174 516-766 15-191 (192)
109 2c5d_C AXL oncogene, tyrosine- 99.9 1.1E-22 3.6E-27 198.8 20.8 169 516-763 10-191 (195)
110 1za6_B IGG heavy chain; immuno 99.9 3.3E-23 1.1E-27 222.0 18.3 287 151-590 7-331 (344)
111 1rhf_A Tyrosine-protein kinase 99.9 2.6E-22 8.8E-27 193.6 20.7 167 517-764 11-182 (182)
112 1epf_A NCAM, protein (neural c 99.9 2.7E-22 9.1E-27 195.1 20.5 173 517-764 11-190 (191)
113 2v5t_A NCAM2, N-CAM 2, neural 99.9 1.9E-22 6.4E-27 195.7 18.7 173 516-765 10-188 (189)
114 2wqr_A IG epsilon chain C regi 99.9 1.4E-22 4.6E-27 215.2 19.0 274 143-589 6-309 (323)
115 3grw_A Fibroblast growth facto 99.9 1.2E-22 4.2E-27 205.6 17.6 190 517-774 24-227 (241)
116 2a38_A Titin; Z1Z2, structural 99.9 1.3E-21 4.4E-26 190.8 20.3 183 312-599 11-194 (194)
117 2j8h_A Titin, connectin; cardi 99.9 7.3E-22 2.5E-26 193.1 17.9 183 313-599 11-196 (197)
118 3b5h_A Cervical EMMPRIN, HAB18 99.9 4.3E-21 1.5E-25 185.4 22.9 166 517-764 7-182 (184)
119 3lcy_A Titin; A-BAND, IG tande 99.9 2.1E-21 7.3E-26 189.6 20.7 182 312-600 13-196 (197)
120 3bp6_B Programmed cell death 1 99.9 8.7E-22 3E-26 193.5 16.8 174 517-765 11-193 (202)
121 3ojm_B Fibroblast growth facto 99.9 4.3E-22 1.5E-26 199.9 14.4 185 517-769 28-225 (231)
122 1f97_A Junction adhesion molec 99.9 7.8E-22 2.7E-26 195.2 15.6 172 517-764 10-206 (212)
123 3rbs_A Myomesin-1; immunoglobu 99.9 1.6E-21 5.6E-26 191.9 17.2 187 315-598 11-205 (207)
124 3s97_C Contactin-1; carbonic a 99.9 1.8E-21 6.3E-26 190.7 16.0 180 516-764 16-200 (201)
125 3k0w_A Mucosa-associated lymph 99.9 4.2E-21 1.4E-25 191.1 18.6 175 516-765 26-202 (218)
126 2va4_A NCAM2, N-CAM 2, neural 99.9 8E-21 2.7E-25 184.7 18.8 174 313-599 11-192 (192)
127 2vr9_A Roundabout 1, ROBO; imm 99.9 1.3E-21 4.3E-26 194.6 13.3 175 516-764 17-205 (217)
128 3sgj_C Human FCG3A receptor; r 99.9 3.5E-21 1.2E-25 189.3 15.7 158 517-767 16-176 (204)
129 2x1w_L Vascular endothelial gr 99.9 2.8E-21 9.7E-26 191.6 15.0 175 516-764 15-206 (213)
130 2yd1_A Tyrosine-protein phosph 99.9 2.1E-20 7.3E-25 185.1 21.3 180 142-451 4-191 (212)
131 2yd6_A PTPRD protein; hydrolas 99.9 2.7E-20 9.1E-25 184.4 21.6 182 142-388 4-194 (212)
132 2c1o_A IGK-C protein; FAB frag 99.9 2.4E-21 8.1E-26 197.9 14.3 171 516-755 46-245 (254)
133 2wv3_A Neuroplastin; igcam, me 99.9 2.6E-20 8.8E-25 181.0 20.9 170 314-599 11-189 (190)
134 2iep_A Muscle-specific kinase 99.9 5E-21 1.7E-25 186.2 15.8 173 142-451 5-181 (192)
135 3jz7_A MCAR, CAR, coxsackievir 99.9 1E-21 3.5E-26 194.5 11.0 172 517-764 9-211 (214)
136 2v9r_A Roundabout homolog 1; p 99.9 4.1E-21 1.4E-25 190.0 14.8 176 516-765 17-202 (212)
137 2ifg_A High affinity nerve gro 99.9 5.6E-22 1.9E-26 212.6 9.1 170 517-764 167-344 (347)
138 3p2t_A Leukocyte immunoglobuli 99.9 6.1E-21 2.1E-25 186.5 15.5 173 519-764 15-195 (196)
139 1vca_A VCAM-D1,2, human vascul 99.9 1.1E-20 3.7E-25 185.4 17.1 172 518-765 11-197 (202)
140 4fa8_A Secreted protein BARF1; 99.9 3.5E-21 1.2E-25 188.4 13.5 182 318-592 5-194 (203)
141 2r15_A Myomesin-1; sarcomeric 99.9 2.9E-20 9.8E-25 184.0 20.3 196 317-601 13-211 (212)
142 4f80_A Butyrophilin subfamily 99.8 2.6E-20 9E-25 186.4 18.2 174 517-764 13-212 (226)
143 2fbo_J V1V2;, variable region- 99.8 5.1E-21 1.8E-25 194.7 11.2 177 517-763 11-250 (250)
144 1fnl_A Low affinity immunoglob 99.8 3E-20 1E-24 177.8 15.8 156 517-765 16-174 (175)
145 3r4d_A CEA-related cell adhesi 99.8 4.6E-20 1.6E-24 181.9 16.6 170 517-763 8-198 (208)
146 2ny1_B T-cell surface glycopro 99.8 1E-20 3.5E-25 182.8 11.6 160 517-766 4-180 (184)
147 2d3v_A Leukocyte immunoglobuli 99.8 4.9E-21 1.7E-25 187.1 9.3 164 518-754 14-181 (196)
148 2v44_A NCAM2, neural cell adhe 99.8 6.9E-20 2.4E-24 177.7 17.1 173 313-598 9-185 (189)
149 1nbq_A JAM, junctional adhesio 99.8 3.4E-21 1.2E-25 190.0 7.8 171 517-763 13-205 (209)
150 1ugn_A LIR1, leukocyte immunog 99.8 9.5E-21 3.3E-25 185.4 10.6 174 518-764 14-197 (198)
151 3sbw_C Programmed cell death 1 99.8 2E-19 7E-24 179.3 20.1 176 517-765 10-211 (222)
152 1uct_A Immunoglobulin alpha FC 99.8 2.9E-20 1E-24 184.6 13.0 172 518-765 18-198 (218)
153 3grw_A Fibroblast growth facto 99.8 1.4E-19 4.7E-24 183.0 18.2 188 143-451 10-210 (241)
154 4frw_A Poliovirus receptor-rel 99.8 5.1E-20 1.7E-24 182.6 14.8 180 517-766 8-212 (218)
155 1rhf_A Tyrosine-protein kinase 99.8 2.4E-19 8.1E-24 172.7 18.3 171 312-598 8-181 (182)
156 1f2q_A High affinity immunoglo 99.8 4.5E-20 1.5E-24 176.9 13.0 156 517-765 13-171 (176)
157 1hng_A CD2; T lymphocyte adhes 99.8 3.5E-20 1.2E-24 177.4 12.0 156 517-763 5-174 (176)
158 3ojm_B Fibroblast growth facto 99.8 9.4E-20 3.2E-24 182.8 15.4 187 143-451 14-213 (231)
159 1jbj_A CD3 epsilon and gamma e 99.8 2.5E-20 8.5E-25 180.3 10.3 167 518-755 9-179 (186)
160 2gi7_A GPVI protein; IG-like d 99.8 3.5E-20 1.2E-24 179.0 11.2 151 518-754 17-169 (184)
161 2v5t_A NCAM2, N-CAM 2, neural 99.8 2.1E-19 7E-24 174.2 16.1 174 144-452 2-181 (189)
162 3mj8_L Stimulatory hamster ant 99.8 1.4E-19 4.9E-24 179.2 14.7 176 517-760 9-208 (213)
163 1oll_A NK receptor; immune sys 99.8 2.4E-19 8.1E-24 173.8 15.9 169 519-764 14-187 (188)
164 3ry4_A Low affinity immunoglob 99.8 3.5E-19 1.2E-23 169.5 16.4 154 517-763 13-169 (170)
165 2x1w_L Vascular endothelial gr 99.8 3.9E-19 1.3E-23 176.1 16.9 182 312-602 13-209 (213)
166 1epf_A NCAM, protein (neural c 99.8 2.2E-19 7.5E-24 174.4 14.8 177 313-598 9-189 (191)
167 1f97_A Junction adhesion molec 99.8 1.6E-19 5.4E-24 178.5 14.0 189 312-600 7-207 (212)
168 2pet_A Lutheran blood group gl 99.8 2.3E-19 7.7E-24 180.1 15.4 177 517-763 9-229 (231)
169 2ghw_B Anti-SARS SCFV antibody 99.8 8.8E-19 3E-23 177.9 19.7 191 517-764 11-241 (247)
170 2c5d_C AXL oncogene, tyrosine- 99.8 1.4E-18 4.7E-23 169.4 18.9 165 144-387 2-182 (195)
171 2c1o_A IGK-C protein; FAB frag 99.8 2.9E-19 1E-23 182.3 14.7 129 419-591 109-246 (254)
172 3d9a_L Light chain of hyhel10 99.8 3E-19 1E-23 176.8 14.0 171 517-756 10-204 (213)
173 1f3r_B FV antibody fragment; I 99.8 5.1E-19 1.8E-23 180.8 15.8 191 517-764 9-244 (257)
174 1nqb_A Single-chain antibody f 99.8 2.2E-18 7.6E-23 175.8 20.5 176 517-764 9-232 (256)
175 3jz7_A MCAR, CAR, coxsackievir 99.8 1.6E-19 5.5E-24 178.6 11.3 129 421-601 82-213 (214)
176 3bp6_B Programmed cell death 1 99.8 6.9E-19 2.4E-23 172.7 15.6 179 313-601 9-194 (202)
177 3b5h_A Cervical EMMPRIN, HAB18 99.8 2.8E-18 9.7E-23 165.5 18.8 165 316-600 8-183 (184)
178 2v9r_A Roundabout homolog 1; p 99.8 7.7E-19 2.6E-23 173.6 15.0 174 142-451 7-193 (212)
179 1lk3_L 9D7 light chain; antige 99.8 6.4E-19 2.2E-23 174.1 14.2 171 517-756 9-203 (210)
180 3nl4_L Antigen binding fragmen 99.8 2.1E-18 7E-23 170.8 17.8 164 517-749 10-198 (213)
181 3p2t_A Leukocyte immunoglobuli 99.8 1.4E-18 4.7E-23 169.7 16.1 89 143-233 4-96 (196)
182 4i0k_A CD276 antigen; immunogl 99.8 2E-19 7E-24 179.3 10.4 180 517-767 4-208 (222)
183 3s97_C Contactin-1; carbonic a 99.8 7.9E-19 2.7E-23 171.8 14.1 190 306-599 8-200 (201)
184 2vr9_A Roundabout 1, ROBO; imm 99.8 1E-18 3.5E-23 173.5 15.1 184 142-453 7-200 (217)
185 3sgj_C Human FCG3A receptor; r 99.8 1.2E-18 4E-23 171.2 15.2 83 143-234 6-89 (204)
186 1nbq_A JAM, junctional adhesio 99.8 1.5E-19 5.2E-24 178.2 8.3 188 311-598 9-207 (209)
187 2d3v_A Leukocyte immunoglobuli 99.8 1.5E-18 5.2E-23 169.3 15.3 132 143-347 4-140 (196)
188 3uzq_A Anti-dengue MAB 4E11; d 99.8 2.9E-18 9.9E-23 174.8 17.8 192 517-765 10-244 (253)
189 2v5y_A Receptor-type tyrosine- 99.8 7.9E-16 2.7E-20 181.8 41.4 405 158-764 90-560 (731)
190 1nkr_A P58-CL42 KIR; inhibitor 99.8 2.8E-18 9.5E-23 168.2 16.9 161 518-752 17-184 (201)
191 1vca_A VCAM-D1,2, human vascul 99.8 3.2E-18 1.1E-22 167.7 17.3 81 154-235 11-92 (202)
192 1c1e_H Catalytic antibody 1E9 99.8 1.7E-18 5.7E-23 172.3 15.5 177 517-762 9-217 (219)
193 3s96_B 3B5H10 FAB light chain; 99.8 1.9E-18 6.5E-23 171.7 15.7 175 517-759 9-214 (218)
194 3auv_A SC-DSFV derived from th 99.8 6.5E-18 2.2E-22 174.6 20.1 191 517-765 21-254 (276)
195 1dr9_A B7-1 (CD80), T lymphocy 99.8 2.2E-18 7.7E-23 168.8 15.7 171 517-761 3-197 (201)
196 1q0x_L FAB 9B1, light chain; a 99.8 2.7E-18 9.4E-23 169.8 16.2 174 517-758 9-208 (212)
197 3k0w_A Mucosa-associated lymph 99.8 4.9E-18 1.7E-22 168.8 17.9 176 142-451 16-193 (218)
198 3tv3_L PGT128 light chain, IG 99.8 7.6E-19 2.6E-23 173.7 11.9 173 517-759 9-205 (211)
199 2if7_A SLAM family member 6; N 99.8 3.6E-18 1.2E-22 166.1 16.4 160 516-759 6-186 (193)
200 2ifg_A High affinity nerve gro 99.8 1.1E-18 3.9E-23 186.8 13.6 174 313-602 165-347 (347)
201 2gi7_A GPVI protein; IG-like d 99.8 2.6E-18 8.8E-23 165.8 14.8 83 142-233 6-90 (184)
202 1sy6_A T-cell surface glycopro 99.8 6.3E-19 2.2E-23 173.0 10.5 186 520-764 15-203 (204)
203 3gkz_A Anti-methamphetamine si 99.8 8.9E-18 3.1E-22 171.6 19.3 194 517-768 17-252 (257)
204 1fnl_A Low affinity immunoglob 99.8 1.4E-18 4.8E-23 166.2 12.5 165 304-600 6-174 (175)
205 1ugn_A LIR1, leukocyte immunog 99.8 3.4E-18 1.2E-22 167.1 15.5 174 317-599 15-197 (198)
206 1nfd_E H57 FAB; complex (immun 99.8 4.3E-19 1.5E-23 175.6 9.1 173 517-757 8-204 (212)
207 1qok_A MFE-23 recombinant anti 99.8 1E-17 3.4E-22 173.7 19.6 191 517-765 35-268 (282)
208 1moe_A Anti-CEA MAB T84.66; an 99.8 9.2E-18 3.1E-22 169.5 18.4 169 517-751 10-220 (240)
209 3esu_F Antibody 14B7* light ch 99.8 5.9E-18 2E-22 172.1 17.0 181 517-750 13-231 (250)
210 3juy_B 3B3 single chain varian 99.8 1.1E-17 3.8E-22 170.8 19.0 193 514-763 12-255 (256)
211 3pv7_A B7-H6, IG-like domain-c 99.8 6.1E-18 2.1E-22 171.8 16.8 176 517-765 12-224 (248)
212 1hng_A CD2; T lymphocyte adhes 99.8 9.9E-19 3.4E-23 167.3 10.3 112 425-598 63-174 (176)
213 4fmk_A Poliovirus receptor-rel 99.8 1.9E-18 6.4E-23 172.1 12.6 177 517-765 10-217 (225)
214 3umt_A SCFV heavy chain and li 99.8 1.5E-17 5E-22 169.9 19.3 193 517-765 11-245 (256)
215 1oll_A NK receptor; immune sys 99.8 6.3E-18 2.2E-22 163.7 15.7 171 317-599 14-187 (188)
216 1p6f_A NKP46, natural cytotoxi 99.8 6.6E-18 2.3E-22 170.2 16.3 171 519-766 17-192 (242)
217 3r4d_A CEA-related cell adhesi 99.8 1.1E-17 3.9E-22 164.7 17.6 164 151-451 6-191 (208)
218 4f80_A Butyrophilin subfamily 99.8 6.5E-18 2.2E-22 169.0 16.1 132 420-601 80-214 (226)
219 1uct_A Immunoglobulin alpha FC 99.8 3.3E-18 1.1E-22 169.8 13.3 176 316-602 18-200 (218)
220 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 6.3E-18 2.1E-22 168.6 15.0 177 517-762 9-220 (222)
221 2p1y_A Bispecific alpha/beta T 99.8 1.2E-17 4E-22 168.5 17.1 175 517-752 9-222 (238)
222 1f2q_A High affinity immunoglo 99.8 3.6E-18 1.2E-22 163.5 12.7 81 143-232 3-84 (176)
223 2znx_A SCFV; fluorotryptohpan, 99.8 1.7E-17 5.8E-22 167.8 18.2 181 517-756 10-229 (242)
224 3d9a_H Heavy chain of hyhel10 99.8 7.9E-18 2.7E-22 166.2 15.3 172 517-758 9-207 (210)
225 2fbo_J V1V2;, variable region- 99.8 1.8E-18 6.2E-23 175.8 10.9 139 421-598 88-250 (250)
226 3mj6_A Junctional adhesion mol 99.8 3.2E-18 1.1E-22 176.0 12.8 173 517-764 14-236 (268)
227 1mq8_A ICAM-1, intercellular a 99.8 2.2E-18 7.6E-23 176.9 11.4 188 494-763 77-280 (291)
228 3sbw_C Programmed cell death 1 99.8 2.9E-17 1E-21 163.5 19.3 133 421-602 78-213 (222)
229 3sob_L Antibody light chain; b 99.8 7.9E-18 2.7E-22 169.5 15.1 174 517-759 33-230 (237)
230 3r06_A Anti-mouse CD3epsilon a 99.7 8.3E-18 2.9E-22 166.4 14.9 171 517-756 10-204 (213)
231 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 2.9E-17 9.8E-22 167.7 19.2 195 517-764 12-247 (256)
232 2zg1_A Sialic acid-binding IG- 99.7 7.9E-18 2.7E-22 166.7 14.6 170 517-764 9-212 (214)
233 2xzc_L FAB A.17 light chain; i 99.7 6.1E-18 2.1E-22 167.9 13.7 172 517-757 9-207 (216)
234 2ny1_B T-cell surface glycopro 99.7 3.6E-18 1.2E-22 164.8 10.9 171 315-602 4-181 (184)
235 3ry4_A Low affinity immunoglob 99.7 9.1E-18 3.1E-22 159.6 12.9 155 313-598 11-169 (170)
236 1nkr_A P58-CL42 KIR; inhibitor 99.7 1E-16 3.4E-21 157.1 20.6 135 142-348 6-149 (201)
237 3knb_B Obscurin-like protein 1 99.7 8.6E-18 2.9E-22 145.5 11.3 94 671-765 12-105 (107)
238 3ux9_B SCFV antibody; five hel 99.7 4.7E-17 1.6E-21 166.1 18.5 184 517-752 11-236 (256)
239 1jbj_A CD3 epsilon and gamma e 99.7 3.4E-18 1.2E-22 165.2 9.5 61 520-590 119-179 (186)
240 1b6u_A KIR2DL3, P58 killer cel 99.7 7.4E-18 2.5E-22 171.2 11.7 175 518-766 16-202 (257)
241 1svz_A Immunoglobulin;, single 99.7 9.6E-17 3.3E-21 162.8 19.2 176 517-751 10-228 (247)
242 1hnf_A CD2; T lymphocyte adhes 99.7 1.6E-17 5.5E-22 159.1 12.7 155 517-762 8-178 (182)
243 2pet_A Lutheran blood group gl 99.7 4.7E-17 1.6E-21 163.1 16.5 177 150-445 6-211 (231)
244 3eow_R Poliovirus receptor; im 99.7 4.2E-18 1.4E-22 169.7 8.5 174 517-763 8-210 (221)
245 1mju_H Immunoglobulin MS6-12; 99.7 2.7E-17 9.1E-22 164.6 14.3 178 517-765 9-217 (227)
246 4frw_A Poliovirus receptor-rel 99.7 2E-17 6.7E-22 163.8 12.9 201 313-600 6-211 (218)
247 3bkj_L WO2 IGG2A FAB fragment 99.7 2.2E-17 7.5E-22 168.2 13.4 170 517-755 43-241 (252)
248 1b6u_A KIR2DL3, P58 killer cel 99.7 9E-17 3.1E-21 163.2 17.7 227 142-546 5-240 (257)
249 3qib_D 2B4 beta chain; IG doma 99.7 3.8E-17 1.3E-21 168.2 15.0 174 517-757 36-247 (270)
250 3fku_X Neutralizing antibody F 99.7 5E-17 1.7E-21 168.2 15.9 200 517-774 9-259 (280)
251 2v5y_A Receptor-type tyrosine- 99.7 1.1E-15 3.8E-20 180.6 29.4 236 517-764 173-456 (731)
252 1mq8_A ICAM-1, intercellular a 99.7 4E-17 1.4E-21 167.6 14.7 266 149-602 4-284 (291)
253 4dzb_B Vbeta2 (MAIT T cell rec 99.7 2.7E-17 9.3E-22 166.7 13.4 174 517-756 10-222 (246)
254 3knb_A Titin; IG-like, titin, 99.7 3.8E-17 1.3E-21 139.6 12.1 94 670-764 3-98 (100)
255 3d9a_L Light chain of hyhel10 99.7 4.2E-17 1.5E-21 161.3 14.4 193 312-596 7-209 (213)
256 1gsm_A Madcam-1, mucosal addre 99.7 2.4E-16 8.3E-21 152.5 19.2 166 518-763 17-203 (210)
257 3mj8_L Stimulatory hamster ant 99.7 5.1E-17 1.8E-21 160.7 14.9 86 147-233 4-109 (213)
258 2j6e_L IGM, FAB light chain; a 99.7 6.1E-18 2.1E-22 170.1 7.9 175 517-759 28-229 (234)
259 1ccz_A Protein (CD58); LFA-3, 99.7 2.1E-17 7.2E-22 157.0 11.1 155 517-762 4-168 (171)
260 1pz5_B Heavy chain of FAB (SYA 99.7 9.7E-17 3.3E-21 159.6 16.3 173 517-760 9-216 (220)
261 2gki_A Nuclease; anti-DNA anti 99.7 1.8E-16 6.2E-21 164.9 19.0 202 517-774 31-281 (291)
262 4i0k_A CD276 antigen; immunogl 99.7 4.1E-17 1.4E-21 162.5 13.5 137 421-604 70-210 (222)
263 1p6f_A NKP46, natural cytotoxi 99.7 1.2E-16 4.2E-21 160.9 16.7 184 304-601 6-192 (242)
264 2gjj_A A21 single-chain antibo 99.7 2.2E-16 7.4E-21 161.8 18.1 182 517-751 14-239 (264)
265 3mtr_A N-CAM-1, NCAM-1, neural 99.7 1.2E-16 4E-21 158.4 15.6 174 517-764 27-208 (215)
266 1lk3_L 9D7 light chain; antige 99.7 1.3E-16 4.3E-21 157.5 15.5 186 313-592 7-204 (210)
267 3bae_H WO2 IGG2A FAB fragment 99.7 1.4E-16 4.8E-21 159.4 16.0 174 517-759 9-220 (228)
268 1op3_H FAB 2G12, heavy chain; 99.7 1.1E-16 3.8E-21 159.8 14.5 171 517-756 9-216 (225)
269 3nl4_L Antigen binding fragmen 99.7 2.8E-16 9.4E-21 155.4 17.2 135 146-349 3-159 (213)
270 2ghw_B Anti-SARS SCFV antibody 99.7 4.1E-16 1.4E-20 158.1 18.8 139 420-599 78-241 (247)
271 1dee_B IGM RF 2A2; FAB-IBP com 99.7 8.1E-16 2.8E-20 153.3 20.6 175 517-759 9-221 (223)
272 1sy6_A T-cell surface glycopro 99.7 2.5E-17 8.4E-22 161.6 8.8 75 521-599 126-203 (204)
273 2fbj_H IGA-kappa J539 FAB (hea 99.7 1.9E-16 6.6E-21 157.4 15.1 171 517-756 9-212 (220)
274 2dru_A Chimera of CD48 antigen 99.7 9.3E-17 3.2E-21 153.9 12.2 153 517-761 8-177 (180)
275 1f3r_B FV antibody fragment; I 99.7 2E-16 6.7E-21 161.5 15.1 85 517-601 148-246 (257)
276 3bqu_C 3H6 FAB light chain; be 99.7 5.1E-18 1.7E-22 170.6 3.2 170 517-755 32-225 (233)
277 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 3.6E-16 1.2E-20 160.7 17.1 172 517-751 24-254 (268)
278 2if7_A SLAM family member 6; N 99.7 1.8E-16 6.2E-21 154.0 13.5 116 422-595 69-187 (193)
279 1dr9_A B7-1 (CD80), T lymphocy 99.7 1.6E-16 5.3E-21 155.6 13.1 132 421-597 63-198 (201)
280 3nl4_H Antigen binding fragmen 99.7 2.4E-16 8.2E-21 156.2 14.5 177 517-762 8-211 (215)
281 3mj6_A Junctional adhesion mol 99.7 8.7E-17 3E-21 165.2 11.6 129 421-600 82-237 (268)
282 3s96_B 3B5H10 FAB light chain; 99.7 3.5E-16 1.2E-20 155.2 15.2 87 146-233 3-116 (218)
283 2vol_A Murine IGG FC; FC, zinc 99.7 9.4E-17 3.2E-21 158.0 10.8 167 520-754 15-197 (207)
284 3tv3_L PGT128 light chain, IG 99.7 6.5E-16 2.2E-20 152.5 16.2 83 148-233 5-106 (211)
285 1nqb_A Single-chain antibody f 99.7 1.2E-15 4.2E-20 155.4 18.4 139 420-601 76-234 (256)
286 2rgs_A I, IG gamma-2B heavy ch 99.7 9.1E-17 3.1E-21 159.5 9.6 168 520-755 23-206 (218)
287 1q0x_L FAB 9B1, light chain; a 99.7 4.7E-16 1.6E-20 153.6 14.7 130 419-592 69-207 (212)
288 1dn0_B IGM-kappa cold agglutin 99.7 1.7E-15 5.8E-20 151.9 18.6 179 517-763 9-225 (232)
289 1hnf_A CD2; T lymphocyte adhes 99.7 2.9E-16 1E-20 150.3 12.3 112 424-597 67-178 (182)
290 3r06_A Anti-mouse CD3epsilon a 99.7 1E-15 3.5E-20 151.3 16.6 86 146-231 3-106 (213)
291 3pv7_A B7-H6, IG-like domain-c 99.7 6.1E-16 2.1E-20 156.9 15.3 84 151-234 10-119 (248)
292 2zg1_A Sialic acid-binding IG- 99.7 3.1E-16 1.1E-20 155.1 12.4 128 421-598 80-213 (214)
293 1hxm_B Gamma-delta T-cell rece 99.7 5.9E-16 2E-20 156.4 14.5 181 517-763 10-227 (242)
294 3q5y_A TCR N15 beta; IG, T cel 99.7 1E-15 3.4E-20 154.5 15.7 174 517-757 11-216 (240)
295 3omz_A Human vdelta1 gamma del 99.7 3.8E-16 1.3E-20 159.6 12.7 180 517-751 11-231 (259)
296 2xzc_L FAB A.17 light chain; i 99.6 1.1E-15 3.9E-20 151.4 15.0 135 419-596 68-211 (216)
297 1c1e_H Catalytic antibody 1E9 99.6 7.7E-16 2.6E-20 152.9 13.7 134 420-597 76-217 (219)
298 1c5d_H Monoclonal antibody aga 99.6 1.7E-15 5.7E-20 150.0 15.9 172 517-758 9-209 (215)
299 2xqy_G A13-D6.3 monoclonal ant 99.6 2.2E-15 7.4E-20 153.8 16.8 171 517-756 15-216 (261)
300 3sob_L Antibody light chain; b 99.6 1.1E-15 3.9E-20 153.6 14.5 194 311-596 29-232 (237)
301 3m8o_H Immunoglobulin A1 heavy 99.6 5.9E-15 2E-19 146.8 19.4 166 517-756 9-214 (221)
302 2cqv_A MLCK, myosin light chai 99.6 2.3E-15 7.7E-20 132.4 14.4 98 671-769 6-103 (114)
303 4ei6_B Vbeta16 XV19 type II na 99.6 9.6E-16 3.3E-20 155.2 13.5 173 517-756 11-221 (245)
304 3liz_H 4C3 monoclonal antibody 99.6 3.4E-15 1.2E-19 151.9 17.3 179 517-764 9-219 (253)
305 3juy_B 3B3 single chain varian 99.6 5.3E-15 1.8E-19 150.8 18.8 73 516-588 157-244 (256)
306 1moe_A Anti-CEA MAB T84.66; an 99.6 3.1E-15 1.1E-19 150.8 16.9 171 147-383 4-220 (240)
307 3umt_A SCFV heavy chain and li 99.6 5.6E-15 1.9E-19 150.6 18.8 86 517-602 147-247 (256)
308 3nfj_J T cell receptor beta ch 99.6 1.2E-15 4E-20 154.6 13.5 175 517-757 10-222 (245)
309 3esu_F Antibody 14B7* light ch 99.6 6.6E-15 2.3E-19 149.5 19.0 185 145-382 5-231 (250)
310 3qib_D 2B4 beta chain; IG doma 99.6 1.5E-15 5.2E-20 156.2 14.4 130 420-589 98-244 (270)
311 2p1y_A Bispecific alpha/beta T 99.6 1.9E-15 6.6E-20 152.1 14.7 177 147-384 3-222 (238)
312 1nfd_E H57 FAB; complex (immun 99.6 4.7E-16 1.6E-20 153.6 9.7 173 151-391 6-206 (212)
313 3uzq_A Anti-dengue MAB 4E11; d 99.6 5.3E-15 1.8E-19 150.5 17.5 139 421-601 78-245 (253)
314 1qok_A MFE-23 recombinant anti 99.6 5.9E-15 2E-19 152.8 18.0 142 421-601 103-269 (282)
315 1ccz_A Protein (CD58); LFA-3, 99.6 2.5E-15 8.4E-20 142.6 13.8 79 153-234 4-95 (171)
316 3bn9_D E2 FAB heavy chain; ant 99.6 1.4E-15 5E-20 154.4 12.4 172 517-757 9-222 (257)
317 3pl6_D MBP peptide / T-cell re 99.6 1.8E-15 6.2E-20 155.4 13.2 173 517-756 35-243 (268)
318 1gsm_A Madcam-1, mucosal addre 99.6 2E-14 7E-19 139.0 19.7 79 154-235 17-97 (210)
319 2znx_A SCFV; fluorotryptohpan, 99.6 6.7E-15 2.3E-19 148.6 16.8 184 312-586 7-222 (242)
320 3auv_A SC-DSFV derived from th 99.6 5E-15 1.7E-19 152.8 16.2 183 144-384 12-236 (276)
321 3bkj_L WO2 IGG2A FAB fragment 99.6 2.6E-15 9E-20 152.7 13.6 129 419-591 105-242 (252)
322 4fmk_A Poliovirus receptor-rel 99.6 2.6E-15 8.8E-20 149.2 13.1 75 152-226 9-112 (225)
323 3knb_B Obscurin-like protein 1 99.6 2.6E-15 8.8E-20 129.8 11.3 88 515-602 20-107 (107)
324 2j6e_L IGM, FAB light chain; a 99.6 2.5E-15 8.4E-20 150.9 12.3 76 145-221 21-115 (234)
325 3qp3_A Titin; I-SET IG-like, s 99.6 5.4E-15 1.8E-19 127.3 12.7 94 671-765 7-100 (103)
326 2w59_A IGY FCU3-4; immunoglobu 99.6 2.1E-15 7.1E-20 151.1 11.5 170 517-755 22-218 (231)
327 3gkz_A Anti-methamphetamine si 99.6 1.3E-14 4.5E-19 147.9 17.8 84 517-600 150-249 (257)
328 2dru_A Chimera of CD48 antigen 99.6 3.8E-15 1.3E-19 142.7 12.4 110 421-596 67-177 (180)
329 3ux9_B SCFV antibody; five hel 99.6 2.4E-14 8.1E-19 145.9 18.7 181 152-384 10-236 (256)
330 1l6x_A Immunoglobulin gamma-1 99.6 1.9E-15 6.5E-20 148.7 10.0 166 521-754 16-197 (207)
331 1mju_H Immunoglobulin MS6-12; 99.6 6.8E-15 2.3E-19 147.0 14.1 138 421-603 77-220 (227)
332 1q9r_B S25-2 FAB (IGG1K) heavy 99.6 1.5E-14 5E-19 144.0 16.4 169 152-389 8-215 (222)
333 3o3u_N Maltose-binding peripla 99.6 4.5E-15 1.5E-19 170.7 14.4 165 517-755 375-567 (581)
334 1svz_A Immunoglobulin;, single 99.6 1.7E-14 6E-19 146.1 17.1 178 147-383 4-228 (247)
335 1i1c_A IGG2A, IG gamma-2A chai 99.6 2.1E-15 7.1E-20 151.7 10.1 168 520-755 29-212 (239)
336 3d9a_H Heavy chain of hyhel10 99.6 1.1E-14 3.9E-19 143.4 15.0 169 151-389 7-206 (210)
337 4dzb_B Vbeta2 (MAIT T cell rec 99.6 5.3E-15 1.8E-19 149.7 12.7 180 147-391 4-225 (246)
338 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.6 3.8E-14 1.3E-18 144.4 19.0 188 146-385 5-234 (256)
339 3eow_R Poliovirus receptor; im 99.6 2.1E-15 7.2E-20 150.0 9.4 131 421-600 76-212 (221)
340 3puc_A Titin; I-SET IG-like do 99.6 1.3E-14 4.6E-19 123.7 13.0 94 671-765 5-98 (99)
341 1g1c_A Immunoglobulin-like dom 99.6 1.3E-14 4.4E-19 123.9 12.7 94 671-765 4-98 (99)
342 1ypz_F T-cell receptor gamma c 99.6 1.1E-14 3.8E-19 145.7 14.1 181 517-761 10-223 (230)
343 2wbj_D OB TCR; transmembrane, 99.6 5.7E-15 2E-19 152.6 11.9 175 516-756 32-247 (279)
344 2rgs_A I, IG gamma-2B heavy ch 99.6 4.8E-15 1.6E-19 147.1 10.7 82 142-223 7-102 (218)
345 3mtr_A N-CAM-1, NCAM-1, neural 99.6 9E-15 3.1E-19 144.7 12.7 178 313-602 25-211 (215)
346 3omz_A Human vdelta1 gamma del 99.6 1.6E-14 5.6E-19 147.4 14.4 184 145-383 3-231 (259)
347 3bqu_C 3H6 FAB light chain; be 99.6 1.7E-15 5.8E-20 152.0 6.9 126 420-589 90-224 (233)
348 2dm2_A Palladin; beta-sandwich 99.6 1.3E-14 4.3E-19 126.6 11.4 99 670-769 6-106 (110)
349 3irg_B Obscurin-like protein 1 99.6 1.5E-14 5.1E-19 125.4 11.5 94 671-765 12-105 (107)
350 1pz5_B Heavy chain of FAB (SYA 99.6 1.4E-14 4.7E-19 144.0 12.7 133 421-596 79-217 (220)
351 1waa_A Titin; metal binding pr 99.6 2.5E-14 8.4E-19 120.1 12.3 89 670-764 3-91 (93)
352 3to4_D NKT vbeta2 (mouse varia 99.6 5.7E-15 2E-19 150.2 10.1 171 517-754 10-219 (253)
353 2gjj_A A21 single-chain antibo 99.6 5.4E-14 1.9E-18 143.9 17.3 186 145-383 6-239 (264)
354 2vol_A Murine IGG FC; FC, zinc 99.6 4.8E-15 1.7E-19 145.7 8.9 121 423-589 68-197 (207)
355 2yuz_A Myosin-binding protein 99.6 1.3E-14 4.6E-19 123.7 10.5 90 671-765 6-95 (100)
356 1u2h_A APEG-1, aortic preferen 99.6 1.8E-14 6.3E-19 122.9 11.3 94 671-765 4-98 (99)
357 2kkq_A Myotilin; unknown funct 99.6 2.6E-14 9.1E-19 125.8 12.4 97 670-767 13-111 (116)
358 3knb_A Titin; IG-like, titin, 99.6 3.1E-14 1.1E-18 121.4 12.4 85 516-600 13-99 (100)
359 3shs_A HOC head outer capsid p 99.6 3.3E-13 1.1E-17 130.8 20.7 77 150-233 8-88 (304)
360 1dee_B IGM RF 2A2; FAB-IBP com 99.6 1E-13 3.6E-18 137.9 18.2 131 421-594 77-221 (223)
361 1wit_A Twitchin 18TH IGSF modu 99.6 1.6E-14 5.6E-19 121.6 10.3 89 672-763 2-92 (93)
362 4acp_A IG gamma-1 chain C regi 99.5 6.6E-15 2.3E-19 147.6 9.0 166 520-753 36-217 (240)
363 2dm3_A KIAA0992 protein, palla 99.5 1.3E-14 4.6E-19 126.5 9.5 101 670-771 7-108 (110)
364 3pl6_D MBP peptide / T-cell re 99.5 3.3E-14 1.1E-18 145.9 14.1 190 144-450 26-243 (268)
365 4ei6_B Vbeta16 XV19 type II na 99.5 6E-14 2E-18 141.9 15.6 87 146-233 4-116 (245)
366 1nct_A Titin; cell adhesion, g 99.5 1.4E-14 4.9E-19 125.2 9.3 95 669-764 11-105 (106)
367 1bec_A 14.3.D T cell antigen r 99.5 4.6E-14 1.6E-18 142.0 14.5 172 516-754 7-212 (238)
368 3irg_A Titin; IG-like, titin, 99.5 3.4E-14 1.2E-18 121.4 11.5 93 671-764 4-98 (100)
369 3bae_H WO2 IGG2A FAB fragment 99.5 9.8E-14 3.3E-18 138.6 16.4 170 151-389 7-218 (228)
370 1x9q_A SCFV, 4M5.3 anti-fluore 99.5 1E-13 3.4E-18 142.3 16.7 70 517-586 160-254 (268)
371 2e7c_A Myosin-binding protein 99.5 7.6E-14 2.6E-18 123.4 13.4 93 670-764 19-114 (118)
372 1dn0_B IGM-kappa cold agglutin 99.5 1.9E-13 6.4E-18 136.9 17.9 139 421-600 76-227 (232)
373 3qhz_H Human monoclonal antibo 99.5 6.8E-14 2.3E-18 140.2 14.7 178 517-763 9-227 (232)
374 3tv3_H PGT128 heavy chain, IG 99.5 7.7E-14 2.6E-18 140.5 14.9 178 517-763 9-235 (239)
375 2kdg_A Myotilin; immonoglobuli 99.5 3.4E-14 1.2E-18 121.4 10.1 92 672-764 5-97 (100)
376 3q5y_A TCR N15 beta; IG, T cel 99.5 8.7E-14 3E-18 140.2 14.6 180 147-392 5-219 (240)
377 3uto_A Twitchin; kinase, muscl 99.5 5.2E-13 1.8E-17 151.1 22.6 91 38-129 4-95 (573)
378 2lu7_A Obscurin-like protein 1 99.5 3E-14 1E-18 116.7 9.0 81 679-765 3-83 (84)
379 3o3u_N Maltose-binding peripla 99.5 6.1E-14 2.1E-18 161.3 15.0 175 152-450 374-568 (581)
380 2gki_A Nuclease; anti-DNA anti 99.5 1.4E-13 4.8E-18 143.0 16.3 176 151-383 29-257 (291)
381 3m8o_H Immunoglobulin A1 heavy 99.5 2.2E-13 7.6E-18 135.3 17.1 127 420-590 78-213 (221)
382 1op3_H FAB 2G12, heavy chain; 99.5 1E-13 3.5E-18 138.1 14.7 169 152-389 8-217 (225)
383 2bk8_A Connectin, M1, titin he 99.5 1.3E-13 4.5E-18 117.0 13.1 89 675-764 4-93 (97)
384 1hxm_B Gamma-delta T-cell rece 99.5 2.1E-13 7.3E-18 137.5 16.4 74 147-220 4-103 (242)
385 2dav_A SLOW MYBP-C, myosin-bin 99.5 2.1E-14 7.1E-19 126.2 7.7 102 672-774 7-120 (126)
386 3nfj_J T cell receptor beta ch 99.5 7.6E-14 2.6E-18 141.1 13.0 181 147-392 4-225 (245)
387 3fku_X Neutralizing antibody F 99.5 2.2E-13 7.6E-18 140.6 16.7 84 518-601 149-251 (280)
388 2edj_A Roundabout homolog 2; K 99.5 7.8E-14 2.7E-18 119.2 11.0 92 669-764 5-97 (100)
389 2fbj_H IGA-kappa J539 FAB (hea 99.5 2.4E-13 8.1E-18 135.0 15.9 166 152-386 8-210 (220)
390 3shs_A HOC head outer capsid p 99.5 1.9E-12 6.4E-17 125.6 21.0 158 315-600 11-183 (304)
391 1l6x_A Immunoglobulin gamma-1 99.5 2.1E-14 7.2E-19 141.1 7.7 68 522-589 123-197 (207)
392 3nl4_H Antigen binding fragmen 99.5 8E-14 2.7E-18 137.9 11.9 138 419-598 71-212 (215)
393 2lvc_A Obscurin-like protein 1 99.5 7E-14 2.4E-18 116.5 9.3 86 672-763 4-91 (91)
394 1x44_A Myosin-binding protein 99.5 2.2E-13 7.6E-18 117.0 12.6 90 672-767 7-98 (103)
395 2wbj_D OB TCR; transmembrane, 99.5 3.4E-13 1.2E-17 139.2 16.4 76 144-219 24-122 (279)
396 2yr3_A Myosin light chain kina 99.5 1.1E-13 3.9E-18 117.9 10.5 90 671-764 10-99 (99)
397 1c5d_H Monoclonal antibody aga 99.5 2.4E-13 8.4E-18 134.3 14.5 131 421-595 76-211 (215)
398 2eny_A Obscurin; beta-sandwich 99.5 1.1E-13 3.6E-18 119.1 10.2 95 670-769 6-101 (104)
399 1oga_E TRBC1, T-cell receptor 99.5 8E-14 2.7E-18 141.6 11.0 173 517-756 12-220 (252)
400 3u2s_H PG9 heavy chain; greek 99.5 1.8E-13 6.3E-18 138.3 13.5 178 517-763 8-236 (248)
401 1i1c_A IGG2A, IG gamma-2A chai 99.5 4.4E-14 1.5E-18 141.9 8.4 179 308-589 18-211 (239)
402 2ckn_A Basic fibroblast growth 99.5 7.6E-14 2.6E-18 118.0 8.2 89 669-763 6-94 (95)
403 2edf_A Obscurin; beta-sandwich 99.5 1.9E-13 6.4E-18 117.5 10.6 92 670-767 6-97 (103)
404 3liz_H 4C3 monoclonal antibody 99.5 3.4E-13 1.1E-17 137.1 14.3 136 420-599 76-219 (253)
405 2e6p_A Obscurin-like protein 1 99.5 2E-13 7E-18 117.5 10.6 92 672-769 7-101 (104)
406 3kvq_A Vascular endothelial gr 99.5 8.3E-14 2.8E-18 120.9 8.1 93 672-767 10-102 (108)
407 2dlt_A Myosin binding protein 99.5 1.9E-13 6.6E-18 118.1 10.2 91 670-764 6-96 (106)
408 1gxe_A Myosin binding protein 99.5 1.5E-13 5.1E-18 124.4 9.4 84 679-763 25-137 (139)
409 1fhg_A Telokin; immunoglobulin 99.5 3.9E-13 1.3E-17 125.0 12.5 95 671-766 40-135 (154)
410 1ypz_E T cell receptor delta, 99.5 7.6E-13 2.6E-17 129.8 15.1 163 517-756 10-200 (207)
411 1he7_A High affinity nerve gro 99.5 3.3E-13 1.1E-17 118.4 11.0 80 685-765 13-99 (126)
412 2w59_A IGY FCU3-4; immunoglobu 99.5 2.4E-13 8.3E-18 135.9 11.7 175 313-589 20-217 (231)
413 3n9g_H FAB fragment of MAB CR4 99.5 5.9E-13 2E-17 133.1 14.4 176 517-763 9-223 (230)
414 3bn9_D E2 FAB heavy chain; ant 99.4 2.1E-13 7E-18 138.5 11.1 136 420-596 76-226 (257)
415 2aty_A Complement receptor chi 99.4 3.8E-13 1.3E-17 145.1 13.8 167 520-754 180-362 (376)
416 3qp3_A Titin; I-SET IG-like, s 99.4 7.8E-13 2.7E-17 113.6 13.0 86 516-601 16-101 (103)
417 1ow0_A IG alpha-1 chain C regi 99.4 1.7E-14 5.9E-19 142.6 2.8 167 517-754 13-200 (214)
418 2eo9_A Roundabout homolog 1; b 99.4 3.5E-13 1.2E-17 119.1 11.0 92 670-765 6-98 (118)
419 2e7c_A Myosin-binding protein 99.4 4.1E-13 1.4E-17 118.6 11.3 86 516-602 32-117 (118)
420 2lu7_A Obscurin-like protein 1 99.4 2E-13 6.8E-18 111.8 8.4 80 516-600 4-83 (84)
421 1wwb_X Protein (brain derived 99.4 5E-13 1.7E-17 114.7 11.3 89 672-764 4-97 (103)
422 2cqv_A MLCK, myosin light chai 99.4 4.9E-13 1.7E-17 117.3 11.3 87 516-602 15-101 (114)
423 2xqy_G A13-D6.3 monoclonal ant 99.4 1.6E-12 5.5E-17 132.4 16.7 168 151-388 13-216 (261)
424 2edn_A Myosin-binding protein 99.4 3.2E-13 1.1E-17 117.2 9.6 94 671-765 11-116 (118)
425 2yuv_A Myosin-binding protein 99.4 1.4E-12 4.7E-17 111.3 13.2 89 671-765 6-95 (100)
426 4acp_A IG gamma-1 chain C regi 99.4 3.7E-13 1.3E-17 134.8 11.1 67 522-588 144-217 (240)
427 2edk_A Myosin-binding protein 99.4 1.7E-13 5.7E-18 117.4 7.2 89 671-765 7-99 (101)
428 2bk8_A Connectin, M1, titin he 99.4 1.3E-12 4.4E-17 110.8 12.6 85 516-600 9-94 (97)
429 1wit_A Twitchin 18TH IGSF modu 99.4 4.9E-13 1.7E-17 112.4 9.7 89 144-232 2-93 (93)
430 3to4_D NKT vbeta2 (mouse varia 99.4 3.4E-13 1.2E-17 137.0 10.3 176 150-391 7-224 (253)
431 1g1c_A Immunoglobulin-like dom 99.4 8.9E-13 3E-17 112.3 11.3 91 143-233 4-98 (99)
432 2dku_A KIAA1556 protein; beta- 99.4 1.4E-12 4.7E-17 112.0 12.4 94 671-770 7-100 (103)
433 1gxe_A Myosin binding protein 99.4 4.2E-13 1.4E-17 121.4 9.5 85 515-599 25-138 (139)
434 1iam_A ICAM-1, CD54, intercell 99.4 7.1E-12 2.4E-16 118.4 18.1 156 517-755 8-168 (185)
435 2cry_A KIN of IRRE-like protei 99.4 9.3E-14 3.2E-18 123.6 4.8 99 671-771 13-119 (122)
436 2yuz_A Myosin-binding protein 99.4 6.7E-13 2.3E-17 113.0 10.0 83 516-602 15-97 (100)
437 2yr3_A Myosin light chain kina 99.4 4.4E-13 1.5E-17 114.2 8.8 91 142-232 9-99 (99)
438 1bec_A 14.3.D T cell antigen r 99.4 2.2E-12 7.5E-17 129.7 15.5 177 149-391 4-217 (238)
439 3cx2_A Myosin-binding protein 99.4 1.1E-12 3.8E-17 113.7 11.4 92 672-764 4-107 (108)
440 3puc_A Titin; I-SET IG-like do 99.4 2E-12 6.9E-17 110.0 12.6 85 516-600 14-98 (99)
441 1oga_E TRBC1, T-cell receptor 99.4 2.9E-12 9.8E-17 130.1 15.9 72 147-219 6-98 (252)
442 2k1m_A Myosin-binding protein 99.4 1.7E-12 5.9E-17 109.5 11.8 87 672-764 8-94 (95)
443 1wwb_X Protein (brain derived 99.4 1.2E-12 4E-17 112.4 10.9 82 521-602 14-100 (103)
444 3irg_B Obscurin-like protein 1 99.4 1.3E-12 4.6E-17 113.0 11.3 87 516-602 21-107 (107)
445 2edh_A Obscurin; structural ge 99.4 3.2E-12 1.1E-16 111.9 13.5 92 667-765 14-105 (113)
446 3iu4_H CHP3 FAB heavy chain; a 99.4 1.1E-12 3.8E-17 133.7 12.1 175 517-762 9-221 (263)
447 3sob_H Antibody heavy chain, l 99.4 2.8E-12 9.4E-17 130.5 14.9 176 517-763 32-249 (256)
448 3caf_A Fibroblast growth facto 99.4 2.5E-13 8.6E-18 116.0 6.0 91 672-763 4-99 (100)
449 3mlr_H Human monoclonal anti-H 99.4 5.4E-12 1.8E-16 125.7 16.3 173 517-760 9-221 (226)
450 1waa_A Titin; metal binding pr 99.4 2.6E-12 9.1E-17 107.6 11.8 81 515-600 12-92 (93)
451 2e7b_A Obscurin; IG-like domai 99.4 1.3E-12 4.4E-17 112.2 10.1 89 671-765 7-95 (103)
452 1he7_A High affinity nerve gro 99.4 1.3E-12 4.3E-17 114.7 9.7 81 522-602 14-101 (126)
453 1ypz_F T-cell receptor gamma c 99.4 2.6E-12 9E-17 128.3 13.4 70 519-590 141-217 (230)
454 2kdg_A Myotilin; immonoglobuli 99.4 1.7E-12 5.8E-17 110.7 10.1 85 517-601 14-99 (100)
455 2edj_A Roundabout homolog 2; K 99.4 1.6E-12 5.6E-17 110.8 9.8 92 142-234 6-99 (100)
456 2kkq_A Myotilin; unknown funct 99.4 2.3E-12 7.8E-17 113.3 11.0 95 142-236 13-112 (116)
457 1u2h_A APEG-1, aortic preferen 99.4 2.8E-12 9.5E-17 109.2 11.1 91 143-233 4-98 (99)
458 1nct_A Titin; cell adhesion, g 99.4 1.2E-12 4E-17 113.0 8.4 84 516-599 22-105 (106)
459 1pd6_A Cardiac MYBP-C;, myosin 99.4 3.9E-12 1.3E-16 109.2 11.5 89 670-764 13-103 (104)
460 3kvq_A Vascular endothelial gr 99.4 9.7E-13 3.3E-17 114.1 7.6 99 496-602 4-102 (108)
461 3tv3_H PGT128 heavy chain, IG 99.4 4.8E-12 1.6E-16 127.2 13.8 138 420-599 83-236 (239)
462 2e6q_A Obscurin-like protein 1 99.4 6.5E-12 2.2E-16 108.3 12.4 88 672-765 8-105 (112)
463 3irg_A Titin; IG-like, titin, 99.3 6.2E-12 2.1E-16 107.1 12.1 84 517-600 14-99 (100)
464 3qhz_H Human monoclonal antibo 99.3 8.7E-12 3E-16 124.7 15.1 138 420-599 80-228 (232)
465 2v9t_A Roundabout homolog 1; s 99.3 1.6E-12 5.4E-17 114.6 8.1 94 670-764 7-108 (117)
466 1i1r_A GP130, interleukin-6 re 99.3 2.8E-10 9.5E-15 118.8 26.4 70 149-219 9-86 (303)
467 2cr6_A KIAA1556 protein, obscu 99.3 1.8E-12 6E-17 113.9 8.0 90 671-765 12-102 (115)
468 2lvc_A Obscurin-like protein 1 99.3 2.9E-12 9.9E-17 106.6 8.8 76 518-598 16-91 (91)
469 3bfo_A Mucosa-associated lymph 99.3 6E-12 2E-16 105.2 10.5 82 672-763 3-85 (91)
470 2dm7_A KIAA1556 protein; beta- 99.3 6.2E-12 2.1E-16 108.9 10.8 88 671-765 7-94 (108)
471 1wwc_A Protein (NT-3 growth fa 99.3 4.3E-12 1.5E-16 111.9 9.9 98 496-602 2-103 (118)
472 2eo9_A Roundabout homolog 1; b 99.3 3.8E-12 1.3E-16 112.3 9.0 84 516-602 16-100 (118)
473 2dm2_A Palladin; beta-sandwich 99.3 6.1E-12 2.1E-16 109.4 10.1 95 142-236 6-105 (110)
474 3u2s_H PG9 heavy chain; greek 99.3 8.9E-12 3E-16 125.9 12.6 136 420-599 75-237 (248)
475 3m45_A Cell adhesion molecule 99.3 1E-11 3.5E-16 107.4 11.0 92 672-765 6-106 (108)
476 2ckn_A Basic fibroblast growth 99.3 5E-12 1.7E-16 106.7 8.7 88 141-231 6-94 (95)
477 1wwc_A Protein (NT-3 growth fa 99.3 7.1E-12 2.4E-16 110.6 10.0 76 688-764 21-100 (118)
478 2ens_A Advanced glycosylation 99.3 2.3E-12 8E-17 108.9 6.2 87 669-765 7-93 (96)
479 2cpc_A KIAA0657 protein; immun 99.3 2.6E-11 8.8E-16 106.0 13.2 87 672-764 10-99 (113)
480 1fhg_A Telokin; immunoglobulin 99.3 2E-11 6.9E-16 113.3 13.1 87 516-602 49-136 (154)
481 2dm3_A KIAA0992 protein, palla 99.3 4.4E-12 1.5E-16 110.3 8.0 87 516-602 17-104 (110)
482 2cr3_A Basic fibroblast growth 99.3 2.8E-12 9.5E-17 109.2 6.3 80 679-764 10-89 (99)
483 1x44_A Myosin-binding protein 99.3 1.9E-11 6.6E-16 104.8 11.4 82 516-602 15-98 (103)
484 2aty_A Complement receptor chi 99.3 2.5E-11 8.5E-16 130.8 14.9 70 156-225 180-261 (376)
485 2eny_A Obscurin; beta-sandwich 99.3 9.8E-12 3.3E-16 106.7 9.4 83 516-602 16-99 (104)
486 1ow0_A IG alpha-1 chain C regi 99.3 9.4E-13 3.2E-17 130.0 3.4 176 148-393 8-209 (214)
487 2dav_A SLOW MYBP-C, myosin-bin 99.3 1.6E-11 5.6E-16 107.7 10.8 90 144-233 7-111 (126)
488 3cx2_A Myosin-binding protein 99.3 1.8E-11 6.2E-16 105.9 11.1 90 143-232 3-107 (108)
489 3n9g_H FAB fragment of MAB CR4 99.3 1.8E-11 6.1E-16 122.3 12.2 135 421-600 77-225 (230)
490 3f8u_B Tapasin; endoplasmic re 99.3 9.2E-11 3.2E-15 123.6 17.9 172 517-760 167-399 (401)
491 3caf_A Fibroblast growth facto 99.3 1E-11 3.4E-16 105.9 8.6 88 144-231 4-99 (100)
492 2k1m_A Myosin-binding protein 99.3 3.5E-11 1.2E-15 101.4 11.6 79 516-599 16-94 (95)
493 2cry_A KIN of IRRE-like protei 99.3 1.6E-12 5.5E-17 115.5 3.5 103 493-602 5-115 (122)
494 2eo1_A OBSCN protein, cDNA FLJ 99.3 1.8E-11 6.1E-16 104.8 9.9 80 681-766 20-99 (102)
495 3so5_A LIG-3, leucine-rich rep 99.3 2.4E-11 8.1E-16 105.8 10.9 91 672-763 10-111 (112)
496 1gl4_B Basement membrane-speci 99.3 1.2E-11 4.2E-16 104.9 8.8 84 675-764 13-97 (98)
497 2edh_A Obscurin; structural ge 99.3 4.3E-11 1.5E-15 104.5 12.2 97 494-602 10-107 (113)
498 2yuv_A Myosin-binding protein 99.2 8E-11 2.7E-15 100.2 13.0 80 518-602 18-97 (100)
499 1ypz_E T cell receptor delta, 99.2 2.5E-10 8.4E-15 111.8 18.3 71 149-220 6-94 (207)
500 1hxm_A Gamma-delta T-cell rece 99.2 1.2E-10 4.1E-15 115.7 16.1 71 517-587 10-98 (229)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.1e-59 Score=539.66 Aligned_cols=502 Identities=23% Similarity=0.376 Sum_probs=392.7
Q ss_pred CCceEEEEEeeccCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCC---C-ceEEEecCCeEEEEeeCCCCCCCCCeEEE
Q psy2776 3 EDSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD---T-PEIVGRSDSSVTLHWRPPQDDGHSPVTGY 78 (803)
Q Consensus 3 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~---~-~~~~~~~~~~v~l~c~~p~~~g~~~~~~~ 78 (803)
++.++|.|.+++.+|+|.|+|.|.|..|.......+.|...+.+|. . ..+....|..++|.|..... ..+...|
T Consensus 58 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~--p~~~v~W 135 (570)
T 3b43_A 58 NNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGS--EPLQVSW 135 (570)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESS--SSCEEEE
T ss_pred CCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccC--CCCEEEE
Confidence 4567999999999999999999999999887777887765443332 1 23445679999999997422 1222223
Q ss_pred EEEeecCCCceeE-EEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeee
Q psy2776 79 VLESHDKDEFMVW-NKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAG 157 (803)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~ 157 (803)
............. .........|.|.++..+|.|.|+|.|.|..|....+ ..+.+.. ...+|.+...+....+.
T Consensus 136 ~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~v~~--~~~pp~~~~~p~~~~v~ 210 (570)
T 3b43_A 136 YKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS---AKLTLSE--HEVPPFFDLKPVSVDLA 210 (570)
T ss_dssp EETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEEC--CCCCCEEEECCCCBCCB
T ss_pred EECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEE---EEEEEcC--CCCCCccccCCceeEec
Confidence 2221111111000 1112235789999999999999999999988764222 2222222 13577887777888889
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+|+.+.|.|.+.|.|.|.+.|+|++..+... .+....+...|.|.+++.+|+|.|+|.|.|..|....++.|.|..+
T Consensus 211 ~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~ 290 (570)
T 3b43_A 211 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 290 (570)
T ss_dssp SBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCC
T ss_pred CCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecC
Confidence 9999999999999999999999999987632 3444556689999999999999999999999998888888887665
Q ss_pred ecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCc
Q psy2776 235 EIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPS 314 (803)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (803)
| .++..+..
T Consensus 291 p-----------------------------------------------------------------------~~~~~~~~ 299 (570)
T 3b43_A 291 P-----------------------------------------------------------------------RFIKKLEP 299 (570)
T ss_dssp C-----------------------------------------------------------------------EEEECCCS
T ss_pred C-----------------------------------------------------------------------cccccCCC
Confidence 3 11112222
Q ss_pred eeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeee
Q psy2776 315 VTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLD 393 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 393 (803)
...+.+|+.+.|.|.+ |.|.+.+.|+|+|.++..+.+..+..
T Consensus 300 ~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~------------------------------------- 342 (570)
T 3b43_A 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF------------------------------------- 342 (570)
T ss_dssp BCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEE-------------------------------------
T ss_pred ccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEE-------------------------------------
Confidence 3345679999999999 89999999999999887655443322
Q ss_pred cCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 394 FGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
..+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 343 -------------------------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~---------------------- 375 (570)
T 3b43_A 343 -------------------------VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS---------------------- 375 (570)
T ss_dssp -------------------------ETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEE----------------------
T ss_pred -------------------------ECCEEEEEECCCCcccCEEEEEEEEeCCCEEEE----------------------
Confidence 223456889999999999999999999998776
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~ 553 (803)
...|.|..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.
T Consensus 376 --------------------~~~l~V~~~P~~~~------~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~ 429 (570)
T 3b43_A 376 --------------------STSLKVKEPPVFRK------KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 429 (570)
T ss_dssp --------------------EEEECEECCCEECS------CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSS
T ss_pred --------------------EEEEEecCCCeeec------CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCC
Confidence 45566666664322 1234667889999999999999999999999999999888
Q ss_pred cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEccccc
Q psy2776 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633 (803)
Q Consensus 554 ~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 633 (803)
++.+........|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 430 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~--------------------------------- 476 (570)
T 3b43_A 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA--------------------------------- 476 (570)
T ss_dssp SEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC---------------------------------
T ss_pred CEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc---------------------------------
Confidence 88887777778999999999999999999999999999988888865
Q ss_pred CceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeec
Q psy2776 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL 713 (803)
Q Consensus 634 ~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l 713 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+
T Consensus 477 --------------------------------------~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~ 518 (570)
T 3b43_A 477 --------------------------------------PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI 518 (570)
T ss_dssp --------------------------------------CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEEC
T ss_pred --------------------------------------CCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEe
Confidence 778888888888999999999999999999999999998554
Q ss_pred -cCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 714 -LSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 714 -~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
..+.++.+...+...+|.|.++ +.+|+|.|+|.|.|.+|.+++++.|.|.
T Consensus 519 ~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 519 VRESDNIWISYSENIATLQFSRA-EPANAGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp CCCTTTEEECCCSSEEEEEESSC-CTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred ccCCCeEEEEECCCEEEEEECcC-CHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence 4566777766777889999999 7999999999999999999999999873
No 2
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=1e-56 Score=540.84 Aligned_cols=606 Identities=18% Similarity=0.226 Sum_probs=437.1
Q ss_pred CceEEEEEeeccCC------cEEEEEEEEcCCCCc-eeeEEEEEecCCCCCCCc-eEEEecCCeEEEEeeCCCCCCCCCe
Q psy2776 4 DSATLTIVKFEDKD------LGDYTISLSNALGQA-SATTKVTLLSAPGAPDTP-EIVGRSDSSVTLHWRPPQDDGHSPV 75 (803)
Q Consensus 4 ~~~~L~I~~~~~~D------~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~p~~~-~~~~~~~~~v~l~c~~p~~~g~~~~ 75 (803)
.+++|.|.+++.+| +|.|+|.|.|..|.. +..+.|.+...+.....+ ......|..++|.|..|...+....
T Consensus 92 ~~g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 171 (816)
T 3dmk_A 92 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE 171 (816)
T ss_dssp STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEE
T ss_pred eCCcEEEcCCChHHccccccceEEEEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEE
Confidence 45789999998887 999999999999975 556666665554433322 3456689999999987643222112
Q ss_pred EEEEEEeecCCCce------eEEEeeeeeeEEEEeccccCCe-EEEEEEEEccCcc-CCCcceeeEEEEcCCCCCCCCee
Q psy2776 76 TGYVLESHDKDEFM------VWNKIETTSTTYEVTKLTTKHE-YMFRVAAVNAIGT-GPASHNTRYVVVKAPVDAEAPVI 147 (803)
Q Consensus 76 ~~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~-g~y~c~a~~~~g~-~~~s~~~~~~~~~~~~~~~~p~i 147 (803)
..+|. ++..... ..+.....++.|.|.+++.+|+ |.|+|.+.+..+. ...+.....+.+..+....+|.+
T Consensus 172 ~v~W~--~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i 249 (816)
T 3dmk_A 172 VVSWH--TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249 (816)
T ss_dssp EEEEE--ETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBC
T ss_pred EEEEE--ecCceEeccccCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCcc
Confidence 22222 1111100 0001112356899999999998 9999999875432 22222333455555554556766
Q ss_pred eccC--cCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-------eeEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 148 QEPL--KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-------RNITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 148 ~~~~--~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.... ....+.+|+.+.|.|.+.|.|.|.+.|+|++..... .+.. ....+|.|.+++.+|+|.|+|.|.|
T Consensus 250 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n 327 (816)
T 3dmk_A 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVK--QVSGTLIIKDAVVEDSGKYLCVVNN 327 (816)
T ss_dssp CGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEE--EETTEEEECSCCGGGCEEEEEEEEC
T ss_pred ccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceE--eccceEEECCCCHhHCEEEEEEEEc
Confidence 5432 456788999999999999999999999996432211 1222 2235899999999999999999999
Q ss_pred CCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
..|.....+.|.|..++..
T Consensus 328 ~~g~~~~~~~l~V~~~~~~------------------------------------------------------------- 346 (816)
T 3dmk_A 328 SVGGESVETVLTVTAPLSA------------------------------------------------------------- 346 (816)
T ss_dssp SSCEEEEEEEEEECEEEEE-------------------------------------------------------------
T ss_pred CCCceEEEEEEEEcCCCce-------------------------------------------------------------
Confidence 9998877777777654200
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
. ..+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+. ..|.|.++..+|+|.|+
T Consensus 347 ----------~-~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~----------~~L~i~~v~~~d~G~Y~ 405 (816)
T 3dmk_A 347 ----------K-IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQ 405 (816)
T ss_dssp ----------E-EESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEE
T ss_pred ----------e-eCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC----------CEEEEcCCCHHHCEEEE
Confidence 0 01223445679999999999 89999999999999886532 36999999999999999
Q ss_pred EEEecccccee--------------------------------eeeeecCCCceeeeeeecCcceeee-eeeEE-----e
Q psy2776 378 VLALNVKSVSK--------------------------------LKWLDFGSGGWWFESKYKDDSLIKG-RNITY-----E 419 (803)
Q Consensus 378 c~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~ 419 (803)
|.+.|..+... +.|...+ .+.....|++++..+.. ..... .
T Consensus 406 C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g-~p~p~v~W~~~g~~l~~~~~~~~~~~~~~ 484 (816)
T 3dmk_A 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGG-NPTPEISWELDGKKIANNDRYQVGQYVTV 484 (816)
T ss_dssp EEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEEC-SSCCEEEEEETTEECCSCTTEEEEEEECT
T ss_pred EEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEec-CCCCEEEEEECCEECCCCCCcccccEEec
Confidence 99999765322 1121111 22345678888877653 22211 1
Q ss_pred --cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee
Q psy2776 420 --NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497 (803)
Q Consensus 420 --~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 497 (803)
.....|.|.++..+|+|.|+|.|.|..|.... ...|
T Consensus 485 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~------------------------------------------~~~l 522 (816)
T 3dmk_A 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH------------------------------------------SAKL 522 (816)
T ss_dssp TSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEE------------------------------------------EEEE
T ss_pred CCCcEEEEEEeeccccCCEEEEEEEEECCCeEEE------------------------------------------EEEE
Confidence 12357999999999999999999999988766 4555
Q ss_pred ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec-cCcC
Q psy2776 498 QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV-RADT 576 (803)
Q Consensus 498 ~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~-~~ds 576 (803)
.|..+|.+.. .....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+..+. .+.+|.|.++. .+|+
T Consensus 523 ~V~~~p~~~~-------~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~---~~~~l~i~~v~~~~d~ 592 (816)
T 3dmk_A 523 NVYGLPYIRQ-------MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF---PNGTLIIENVERNSDQ 592 (816)
T ss_dssp EECSSCEECC-------CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEEC---TTSEEEESSCCHHHHC
T ss_pred EEecCCeeEc-------cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEe---cCCeEEEEecCccccC
Confidence 6666653321 12466789999999999999999999999999998876665543 23579999998 5899
Q ss_pred eEEEEEEEcCCCC-eEEEEEEEEeeeE-----------------------eE-eeecccccEEEeeeeC-----------
Q psy2776 577 STYTVTATNAAGS-TSLDLSLQVLGYI-----------------------IQ-QQEKNSLKFTKVATLD----------- 620 (803)
Q Consensus 577 G~Y~C~a~n~~g~-~s~s~~l~V~~~p-----------------------~~-~~~~~~~~w~~~~~~~----------- 620 (803)
|.|+|.|.|..|. .+..+.|.|..+| +. ...+..+.|++.+...
T Consensus 593 G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~ 672 (816)
T 3dmk_A 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRV 672 (816)
T ss_dssp EEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEE
T ss_pred EEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEc
Confidence 9999999999886 4556777777665 11 1223378999987543
Q ss_pred -CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec
Q psy2776 621 -PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS 699 (803)
Q Consensus 621 -~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~ 699 (803)
.....|.|.++..++.|.|+|.|.|..|....+..+.+. .+|.|...+....+.+|+.++|.|.+.|.
T Consensus 673 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~-----------~~P~~~~~~~~~~v~~G~~v~l~C~~~g~ 741 (816)
T 3dmk_A 673 GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-----------VPPRWILEPTDKAFAQGSDAKVECKADGF 741 (816)
T ss_dssp TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE-----------EEEEEEECCCCEEEETTCCEEEECEEEEE
T ss_pred CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE-----------eCCceeeecccceecCCCcEEEEEEEecC
Confidence 223579999999999999999999999877544443332 27888888888899999999999999999
Q ss_pred CCCceEEeeCCeeccC-------CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 700 PAPSIVWFRNNKPLLS-------SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 700 p~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|.+.|++++..+.. +.+... .+. +|.|.++ +.+|+|.|+|.|.|.+|.+..++.+..+
T Consensus 742 P~p~i~W~k~~~~~~~~~~~~~~~~~~~~--~~~--~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 742 PKPQVTWKKAVGDTPGEYKDLKKSDNIRV--EEG--TLHVDNI-QKTNEGYYLCEAINGIGSGLSAVIMISV 808 (816)
T ss_dssp SCCEEECCEECSSSTTCCBCCCCBTTEEE--ETT--EEEECSC-CGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCeEEEEecCCCCCccccccccCCCEEe--cCC--EEEECcC-ChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence 9999999998755432 222221 222 6999999 7999999999999999999988888764
No 3
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=4.6e-55 Score=511.96 Aligned_cols=536 Identities=17% Similarity=0.233 Sum_probs=387.8
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCC-CCceeeEEEEEecCCCCCCC---ceEEEecCCeEEEEeeCCCCCCCCCeEEEEE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNAL-GQASATTKVTLLSAPGAPDT---PEIVGRSDSSVTLHWRPPQDDGHSPVTGYVL 80 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~p~~---~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~ 80 (803)
+++|.|.+++.+|+|.|+|.+.|.. +..+..+.|.|..++.+|.. .......|..++|.|.... ..+...|..
T Consensus 70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~---p~~~v~W~~ 146 (642)
T 1e07_A 70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPET---QDATYLWWV 146 (642)
T ss_pred CCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECCC---CCeeEEEEE
Confidence 4689999999999999999999864 45567788888876555432 1233456888999999753 223223332
Q ss_pred EeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCC
Q psy2776 81 ESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQS 160 (803)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~ 160 (803)
........ ........+..|.|.+++.+|.|.|+|.+.|..|.. .+....+.+...| ..+.+ .+.+..+.+|+
T Consensus 147 ~g~~l~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p---~~~~~--~~~~~~~~~G~ 219 (642)
T 1e07_A 147 NNQSLPVS-PRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGP---DAPTI--SPLNTSYRSGE 219 (642)
T ss_pred CCeECCCC-CceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCC---CCcEE--ecCCcccccCC
Confidence 22222111 112222346789999999999999999999987752 2333333333222 22333 34566788999
Q ss_pred cEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeeccccc
Q psy2776 161 SVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESA 240 (803)
Q Consensus 161 ~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~ 240 (803)
.+.|.|.+.|.|.+.+.|++++..+.. ...|.|.+++.+|+|.|+|.|.|..|....+..+.+......+.
T Consensus 220 ~~~l~C~~~g~p~~~i~W~~~g~~i~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~- 290 (642)
T 1e07_A 220 NLNLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK- 290 (642)
T ss_pred EEEEEEEcCCCCCcEEEEEECCeEccc--------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCC-
Confidence 999999999999999999999987632 35699999999999999999999998766554444333210000
Q ss_pred ceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecc
Q psy2776 241 RHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPH 320 (803)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (803)
+ ++ ..+....+..
T Consensus 291 -----------------------------------------------------------------p-~i-~~~~~~~~~~ 303 (642)
T 1e07_A 291 -----------------------------------------------------------------P-FI-TSNNSNPVED 303 (642)
T ss_pred -----------------------------------------------------------------C-EE-EcCCceeEec
Confidence 0 00 0122334555
Q ss_pred ccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee-----eeee--
Q psy2776 321 LGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK-----LKWL-- 392 (803)
Q Consensus 321 g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~-----~~~~-- 392 (803)
|+.+.|.|.+ +.| +.+.|+++|..+..+.++.+..++ ..|.|.++..+|+|.|+|.+.|..+... +...
T Consensus 304 g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 380 (642)
T 1e07_A 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380 (642)
T ss_pred CCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCC--CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcC
Confidence 8889999999 555 799999999999877776665443 4799999999999999999999776421 1111
Q ss_pred ---------------------ecC--CCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceee
Q psy2776 393 ---------------------DFG--SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449 (803)
Q Consensus 393 ---------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~ 449 (803)
.|. +.+.....|+++|..+. ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 381 p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 452 (642)
T 1e07_A 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ--------HTQELFISNITEKNSGLYTCQANNSASGH 452 (642)
T ss_pred CCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC--------CCceEEEccCChhhCeEEEEEEEcCCCCC
Confidence 111 11233456777776553 23469999999999999999999998876
Q ss_pred eeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEE
Q psy2776 450 ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVE 529 (803)
Q Consensus 450 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~ 529 (803)
..+. .+.+.+..++..|.+.. .....+.+|+.+.|.
T Consensus 453 ~~s~----------------------------------------~~~v~v~~~~~~p~i~~----~~~~~v~~g~~v~l~ 488 (642)
T 1e07_A 453 SRTT----------------------------------------VKTITVSAELPKPSISS----NNSKPVEDKDAVAFT 488 (642)
T ss_pred cccc----------------------------------------eEEEEEeccCCCceEec----CCceeecCCCeEEEE
Confidence 6532 22333333222222211 124567899999999
Q ss_pred EEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE-EEEEEEEeeeEeEeeec
Q psy2776 530 VKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-LDLSLQVLGYIIQQQEK 608 (803)
Q Consensus 530 C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-~s~~l~V~~~p~~~~~~ 608 (803)
|.+.+ |.+.+.|+|+|..+..+.++.+.. ++..|.|.++..+|+|.|+|.|.|..|... .++.|.|...
T Consensus 489 C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~------- 558 (642)
T 1e07_A 489 CEPEA-QNTTYLWWVNGQSLPVSPRLQLSN--GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYG------- 558 (642)
T ss_pred EECCC-CCcEEEEEECCEeCCCCCcEEEcC--CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeC-------
Confidence 99995 889999999999998877665543 457999999999999999999999998754 4678888653
Q ss_pred ccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC
Q psy2776 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688 (803)
Q Consensus 609 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~ 688 (803)
|+.+...+....+.+|+
T Consensus 559 ---------------------------------------------------------------p~~~~~~~~~~~v~~g~ 575 (642)
T 1e07_A 559 ---------------------------------------------------------------PDTPIISPPDSSYLSGA 575 (642)
T ss_pred ---------------------------------------------------------------CCcceecCCceeEEcCC
Confidence 23344455667889999
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
.+.|.|.+.|.|.|.+.|++||.++..+ ..|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|+|.
T Consensus 576 ~~~l~C~~~g~p~p~v~W~~~g~~i~~~-----------~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v~ 641 (642)
T 1e07_A 576 NLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVLFIAKI-TPNNNGTYACFVSNLATGRNNSIVKSITVS 641 (642)
T ss_pred cEEEEEEeccCCCCeEEEEECCEECccC-----------ceEEECcc-cccCCeEEEEEEEecccCcceeEEEEEEEc
Confidence 9999999999999999999999988532 36999999 789999999999999999999999999763
No 4
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=6.7e-54 Score=493.71 Aligned_cols=461 Identities=25% Similarity=0.379 Sum_probs=367.2
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..||.|..++.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .+...++..+|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (570)
T 3b43_A 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82 (570)
T ss_dssp CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence 46888988889999999999999999999999999999999887532 344455678999999999999999999999
Q ss_pred CCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
..|....+..|.|.....+
T Consensus 83 ~~g~~~~~~~l~v~~~~~~------------------------------------------------------------- 101 (570)
T 3b43_A 83 SVGAVASSAVLVIKERKLP------------------------------------------------------------- 101 (570)
T ss_dssp TTEEEEEEEEEEECCCCCC-------------------------------------------------------------
T ss_pred CCceEEEEEEEEECCCCCC-------------------------------------------------------------
Confidence 9998877777776543110
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
+.|... +.......|+.+.|.|.+ |.|.+++.|+|||..+..+.............|.|.++..+|+|.|+
T Consensus 102 -------p~~~~~-~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 173 (570)
T 3b43_A 102 -------PSFARK-LKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173 (570)
T ss_dssp -------CEESSC-CCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred -------Cccccc-CCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEE
Confidence 111111 122334569999999999 88999999999999998777666555566678999999999999999
Q ss_pred EEEecccccee--------------------------------eeeeecCCCceeeeeeecCcceeee---eeeEEecCe
Q psy2776 378 VLALNVKSVSK--------------------------------LKWLDFGSGGWWFESKYKDDSLIKG---RNITYENNV 422 (803)
Q Consensus 378 c~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 422 (803)
|.|.|..+... +.|...+ .+.....|++++..+.. ..+....+.
T Consensus 174 C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~i~W~k~g~~i~~~~~~~~~~~~~~ 252 (570)
T 3b43_A 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTG-TAPIKITWAKDNREIRPGGNYKMTLVENT 252 (570)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEES-SSCCEEEEEETTEECCTTSSEEEEEETTE
T ss_pred EEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEE-CCCCEEEEEECCEECcCCCcEEEEEECCE
Confidence 99999765432 1111111 12335679999887652 345566777
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|..+
T Consensus 253 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~------------------------------------------~~~l~V~~~ 290 (570)
T 3b43_A 253 ATLTVLKVTKGDAGQYTCYASNVAGKDSC------------------------------------------SAQLGVQEP 290 (570)
T ss_dssp EEEEESSBCGGGCEEEEEEEEETTEEEEE------------------------------------------EEEECCBCC
T ss_pred EEEEEcccCcccCEEEEEEEECCCCcEEE------------------------------------------EEEEEeecC
Confidence 89999999999999999999999988766 556677777
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
|.+.. .......+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++++........|.|.+++.+|+|.|+|.
T Consensus 291 p~~~~-----~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 365 (570)
T 3b43_A 291 PRFIK-----KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365 (570)
T ss_dssp CEEEE-----CCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred Ccccc-----cCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEE
Confidence 65321 1112345788999999999999999999999999999988888877777788999999999999999999
Q ss_pred EEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 583 ATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 583 a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|.|..|..+.++.|.|..
T Consensus 366 a~N~~g~~~~~~~l~V~~-------------------------------------------------------------- 383 (570)
T 3b43_A 366 AHNAAGSASSSTSLKVKE-------------------------------------------------------------- 383 (570)
T ss_dssp EEBTTBCCEEEEEECEEC--------------------------------------------------------------
T ss_pred EEeCCCEEEEEEEEEecC--------------------------------------------------------------
Confidence 999999999999998866
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+|+|.++..+.++.+..++....|.|.++ +.+|+|
T Consensus 384 ---------~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v-~~~D~G 453 (570)
T 3b43_A 384 ---------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV-DSADIG 453 (570)
T ss_dssp ---------CCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSC-CGGGCE
T ss_pred ---------CCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCC-ChhhCE
Confidence 5666666677788899999999999999999999999999999888998888888889999999 799999
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccC---CCCCcccCCccceeeeeeeeEE
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVG---RPSINSIDIDLNHVHYLAQSTE 791 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~---pp~~~~~~~~~~~~~~~~~~~~ 791 (803)
.|+|.|.|.+|.++..+.|.|..++.. +..+.....+..+|+|.+.|.|
T Consensus 454 ~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p 505 (570)
T 3b43_A 454 EYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAE 505 (570)
T ss_dssp EEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCS
T ss_pred EEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCC
Confidence 999999999999999999998653321 1122222333445666655543
No 5
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=1.1e-52 Score=503.14 Aligned_cols=560 Identities=17% Similarity=0.197 Sum_probs=108.2
Q ss_pred ceEEEEEeeccCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCC-----Cc-eEEEecC--CeEEEEeeCCCCCCCCCeE
Q psy2776 5 SATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPD-----TP-EIVGRSD--SSVTLHWRPPQDDGHSPVT 76 (803)
Q Consensus 5 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~-----~~-~~~~~~~--~~v~l~c~~p~~~g~~~~~ 76 (803)
.++|.|.+++.+|+|.|+|.+. .+..+..+.|.|.++..+.. .+ .+...+| ..++|.|.... +...+
T Consensus 85 ~~~l~I~~~~~~d~G~Y~C~~~--~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~--p~~~v- 159 (772)
T 3v2a_R 85 CKTLTIPKVIGNDTGAYKCFYR--ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI--SNLNV- 159 (772)
T ss_dssp -------------------------------------------------CEEEEEEESSCCCEEEECCCCSC--SSCCE-
T ss_pred EEEEEECCCcHhhCEeEEEEEc--CCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC--CCcEE-
Confidence 5699999999999999999997 33334556666654333221 11 2344568 88999999753 22222
Q ss_pred EEEEE--eec--CC-CceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccC
Q psy2776 77 GYVLE--SHD--KD-EFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPL 151 (803)
Q Consensus 77 ~~~~~--~~~--~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~ 151 (803)
.|..+ ... .. .... ......|.|.+++.+|.|.|+|.+.+..+. ..+...... +.. ..++.+...+
T Consensus 160 ~w~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~s~~~~~~-v~~---~~~~~v~~~~ 230 (772)
T 3v2a_R 160 SLCARYPEKRFVPDGNRIS----WDSKKGFTIPSYMISYAGMVFCEAKINDES-YQSIMYIVV-VVG---YRIYDVVLSP 230 (772)
T ss_dssp EEEEETTTEEECCCSSSCE----EETTTEEEEEGGGTTTCSEEEEEEEETTEE-EECCEEEEE-EEC---CCEEEEEEEC
T ss_pred EEEecCCCccccCCCceee----cCCCCCeEecCCChhhCeEEEEEEEECCce-EEEEEEEEE-Eec---CccceeeeCC
Confidence 22221 111 00 0011 123567999999999999999999875332 222222222 211 1233344433
Q ss_pred -cCeeeecCCcEEEEEEECc--cCCCeeEEEEcCeeccceeE-----------EEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 152 -KDSVAGFQSSVTLECVVSG--VPTPDIKWYKDDSLIKGRNI-----------TYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 152 -~~~~v~~G~~~~L~C~~~g--~p~p~i~W~~~~~~~~~~~~-----------~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
....+.+|+.++|.|.+.+ .|.+.+.|++++..+..... ........|.|.+++.+|+|.|+|.+.
T Consensus 231 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 310 (772)
T 3v2a_R 231 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310 (772)
T ss_dssp CSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEE
T ss_pred CCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEE
Confidence 4478999999999999987 45668999999876543211 112245689999999999999999999
Q ss_pred cCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 218 NEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 218 n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
|..+....++.|.|..+|...
T Consensus 311 ~~~~~~~~~~~l~V~~~p~~~----------------------------------------------------------- 331 (772)
T 3v2a_R 311 SGLMTKKNSTFVRVHEKPFVA----------------------------------------------------------- 331 (772)
T ss_dssp CSSCEEEEEEEEEEECCCC-------------------------------------------------------------
T ss_pred cCCcceeEEEEEEEeCCCeeE-----------------------------------------------------------
Confidence 998887778888887653110
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
+....+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......
T Consensus 332 ----------~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~----------------------- 378 (772)
T 3v2a_R 332 ----------FGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK----------------------- 378 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------eccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc-----------------------
Confidence 00011123345679999999999 88999999999998876521110
Q ss_pred EEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccC
Q psy2776 377 GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456 (803)
Q Consensus 377 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~ 456 (803)
+...|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 379 --------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~--- 411 (772)
T 3v2a_R 379 --------------------------------------------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSH--- 411 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------cceeEEEecCChhcCceEEEEEEECCcCeEEEE---
Confidence 123488899999999999999999887765432
Q ss_pred CCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC
Q psy2776 457 GLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP 536 (803)
Q Consensus 457 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p 536 (803)
.+.|.|..+|.+........ ...+.+|+.+.|.|.+.|.|
T Consensus 412 -------------------------------------~~~l~v~~~P~~~~~~~~~~---~~~~~~g~~~~l~C~~~g~p 451 (772)
T 3v2a_R 412 -------------------------------------VVSLVVYVPPQIGEKSLISP---VDSYQYGTTQTLTCTVYAIP 451 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------EEEEEEecCCcccccccCCC---ccccCCCCcEEEEeEeccCC
Confidence 45666677776543321111 12378899999999999999
Q ss_pred CCe-eEEeeCCee--------------------------------ecCC-CcEEEEec--CCeEEEEEeeeccCcCeEEE
Q psy2776 537 RPE-ISWMKNGAE--------------------------------ITDS-KACRIFID--EETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 537 ~~~-v~W~~~g~~--------------------------------i~~~-~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~ 580 (803)
.|. +.|++++.. +... .+..+... ...+.|.|.++ +|+|.|+
T Consensus 452 ~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~ 529 (772)
T 3v2a_R 452 PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYK 529 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEE
Confidence 997 999997432 1110 01111111 11257888876 7999999
Q ss_pred EEEEcCCCCeEEEEEEEEeeeE---------------------eEeeecccccEEEeeeeC-------------------
Q psy2776 581 VTATNAAGSTSLDLSLQVLGYI---------------------IQQQEKNSLKFTKVATLD------------------- 620 (803)
Q Consensus 581 C~a~n~~g~~s~s~~l~V~~~p---------------------~~~~~~~~~~w~~~~~~~------------------- 620 (803)
|.|.|..|.....+.|.|..+| +...+...+.|++.+...
T Consensus 530 C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 609 (772)
T 3v2a_R 530 CEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccce
Confidence 9999999999999988888655 223344678899876321
Q ss_pred ------------CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC
Q psy2776 621 ------------PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688 (803)
Q Consensus 621 ------------~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~ 688 (803)
.....|.|.++..++.|.|+|.|.|..|....+....+... ...+|.|...+....+.+|+
T Consensus 610 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~-------~~~~P~~~~~~~~~~v~~g~ 682 (772)
T 3v2a_R 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL-------ERVAPTITGNLENQTTSIGE 682 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccc-------ccCCCEeecCCCceEEeCCC
Confidence 01234889999999999999999997765543322222221 12478888888888899999
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
++.|.|.+.|.|.|.|.|+|+|.++..+.++.+.. ...+|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|..++.
T Consensus 683 ~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~ 759 (772)
T 3v2a_R 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 759 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC--CCcEEEECcC-CHHHCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence 99999999999999999999999998776654433 3458999999 79999999999999999999999999976544
Q ss_pred C
Q psy2776 769 G 769 (803)
Q Consensus 769 ~ 769 (803)
.
T Consensus 760 ~ 760 (772)
T 3v2a_R 760 K 760 (772)
T ss_dssp -
T ss_pred c
Confidence 3
No 6
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=3.1e-48 Score=454.08 Aligned_cols=461 Identities=16% Similarity=0.216 Sum_probs=344.4
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~ 177 (803)
+..|.|.+++.+|+|.|+|.+.+..... ..... .+.+..+ ..+|.+... ....+.+|+.+.|.|.+.+ |.+.+.
T Consensus 70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~-~l~V~~~--~~~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~ 143 (642)
T 1e07_A 70 NASLLIQNIIQNDTGFYTLHVIKSDLVN-EEATG-QFRVYPE--LPKPSISSN-NSKPVEDKDAVAFTCEPET-QDATYL 143 (642)
T ss_pred CCcEEECCCCcccCcEEEEEEEcCCCeE-EEEEE-EEEeccc--CCCCcEEcc-CceeEecCCcEEEEEECCC-CCeeEE
Confidence 4689999999999999999998753221 11112 2223221 345666553 3456788999999999998 889999
Q ss_pred EEEcCeeccc-eeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEE
Q psy2776 178 WYKDDSLIKG-RNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVI 255 (803)
Q Consensus 178 W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 255 (803)
|++++..+.. .++........|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|..+.
T Consensus 144 W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~---------------- 207 (642)
T 1e07_A 144 WWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT---------------- 207 (642)
T ss_pred EEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcE----------------
Confidence 9999988864 344444455789999999999999999999988864 3456777765421100
Q ss_pred eeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc
Q psy2776 256 KRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~ 334 (803)
+ .+....+.+|+.+.|.|.+ +.|.
T Consensus 208 ----------------------------------------------------~---~~~~~~~~~G~~~~l~C~~~g~p~ 232 (642)
T 1e07_A 208 ----------------------------------------------------I---SPLNTSYRSGENLNLSCHAASNPP 232 (642)
T ss_pred ----------------------------------------------------E---ecCCcccccCCEEEEEEEcCCCCC
Confidence 0 1122335679999999999 8999
Q ss_pred eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeee
Q psy2776 335 IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414 (803)
Q Consensus 335 ~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (803)
+.+.|+++|..+...
T Consensus 233 ~~i~W~~~g~~i~~~----------------------------------------------------------------- 247 (642)
T 1e07_A 233 AQYSWFVNGTFQQST----------------------------------------------------------------- 247 (642)
T ss_pred cEEEEEECCeEcccC-----------------------------------------------------------------
Confidence 999999998877321
Q ss_pred eeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccce
Q psy2776 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494 (803)
Q Consensus 415 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (803)
..|.|.+++.+|+|.|+|.|.|..|....+. .
T Consensus 248 --------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~----------------------------------------~ 279 (642)
T 1e07_A 248 --------QELFIPNITVNNSGSYTCQAHNSDTGLNRTT----------------------------------------V 279 (642)
T ss_pred --------CceEEecccccCCeEEEEEEEeCCCceEEee----------------------------------------e
Confidence 1277888899999999999999887665432 2
Q ss_pred eeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccC
Q psy2776 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA 574 (803)
Q Consensus 495 ~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~ 574 (803)
+.|.|..+|..|.+.. .....+..|+.+.|.|.+.+.| +.+.|+++|..+..+.++.+.. ++..|.|.++..+
T Consensus 280 ~~v~v~~~~~~p~i~~----~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~ 352 (642)
T 1e07_A 280 TTITVYAEPPKPFITS----NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN--DNRTLTLLSVTRN 352 (642)
T ss_pred EEEEEEccCCCCEEEc----CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeC--CCCEEEEeccCcc
Confidence 3344444333332221 1134456688899999999976 6999999999987776665543 4578999999999
Q ss_pred cCeEEEEEEEcCCCCe-EEEEEEEEeeeE-----------------------eEeeecccccEEEeeeeCCccceEEEcc
Q psy2776 575 DTSTYTVTATNAAGST-SLDLSLQVLGYI-----------------------IQQQEKNSLKFTKVATLDPSTLQYTVEN 630 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~-s~s~~l~V~~~p-----------------------~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 630 (803)
|+|.|+|.|.|..|.. +..+.|.|...| +...+...+.|++.+........|.|.+
T Consensus 353 d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~ 432 (642)
T 1e07_A 353 DVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISN 432 (642)
T ss_pred cCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEcc
Confidence 9999999999999874 556788887554 2234556899999988887788899999
Q ss_pred cccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC
Q psy2776 631 LRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN 710 (803)
Q Consensus 631 ~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~ 710 (803)
+...+.|.|+|.|.|..|....+....+.... ...+|.+.. .....+.+|+++.|.|.+.+ |.+.+.|+++|
T Consensus 433 ~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~------~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g 504 (642)
T 1e07_A 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSA------ELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNG 504 (642)
T ss_pred CChhhCeEEEEEEEcCCCCCcccceEEEEEec------cCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECC
Confidence 99999999999999999987665444433321 223455443 44567889999999999994 88999999999
Q ss_pred eeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee-eeEEEEEEee
Q psy2776 711 KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVDVE 766 (803)
Q Consensus 711 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~ 766 (803)
.++..+.++.+..++ ..|.|.++ +.+|+|.|+|.|.|..|... ..+.|.|...
T Consensus 505 ~~l~~~~~~~~~~~~--~~L~i~~v-~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 558 (642)
T 1e07_A 505 QSLPVSPRLQLSNGN--RTLTLFNV-TRNDARAYVCGIQNSVSANRSDPVTLDVLYG 558 (642)
T ss_pred EeCCCCCcEEEcCCC--cEEEEeec-ChhcCceEEEEeEcCCCCccCCCEEEEEEeC
Confidence 999888877665443 48999999 79999999999999999864 4688888643
No 7
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=9.7e-49 Score=471.39 Aligned_cols=596 Identities=14% Similarity=0.181 Sum_probs=403.7
Q ss_pred EEEecCCeEEEEeeCCCCCCC-CCeEEEEE-EeecCCCceeEEEeeeeeeEEEEeccccCC------eEEEEEEEEccCc
Q psy2776 52 IVGRSDSSVTLHWRPPQDDGH-SPVTGYVL-ESHDKDEFMVWNKIETTSTTYEVTKLTTKH------EYMFRVAAVNAIG 123 (803)
Q Consensus 52 ~~~~~~~~v~l~c~~p~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~y~c~a~~~~g 123 (803)
+....|..++|.|.+. |. .+...|.. ........-.+ .....++.|.|.++...| .|.|+|.|.|..|
T Consensus 49 ~~~~~g~~~~l~C~a~---g~p~p~~~W~k~~g~~~~~~~~~-~~~~~~g~l~i~~~~~~~~~~~~d~G~Y~C~a~n~~G 124 (816)
T 3dmk_A 49 IDFSNSTGAEIECKAS---GNPMPEIIWIRSDGTAVGDVPGL-RQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 124 (816)
T ss_dssp EEEETTTCEEEECEEE---EESCCEEEEEETTSCBCCCBTTT-BEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred EEEECCCCeEEEeeec---CCCCCEEEEEeCCCCCccCCCce-EEEeeCCcEEEcCCChHHccccccceEEEEEEecCcc
Confidence 4456789999999863 22 22222221 11111110001 111236789999998876 8999999999988
Q ss_pred cCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccC-C--CeeEEEEcCeecc------ceeEEEec
Q psy2776 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVP-T--PDIKWYKDDSLIK------GRNITYEN 194 (803)
Q Consensus 124 ~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p-~--p~i~W~~~~~~~~------~~~~~~~~ 194 (803)
... +....+. + ..++.+...+....+.+|+.+.|.|.+.+.+ . +.+.|++++..+. ..++...
T Consensus 125 ~~~-S~~~~v~-~-----~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~- 196 (816)
T 3dmk_A 125 SII-SRDVHVR-A-----VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL- 196 (816)
T ss_dssp EEE-EEEEEEE-E-----ECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEEC-
T ss_pred eEE-ccceEEE-E-----EEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEe-
Confidence 532 2232222 2 1233344455667889999999999987533 2 6899999876432 2233332
Q ss_pred CeeEEEEecCCCCcc-eEEEEEEEcCCcCee-e---EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEE
Q psy2776 195 NVARFTVVNCSESSE-GRYTCKATNEAGTAE-T---SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~-~---s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (803)
....|.|.+++.+|+ |.|+|.+.|..+... . ...|.|.....
T Consensus 197 ~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~--------------------------------- 243 (816)
T 3dmk_A 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS--------------------------------- 243 (816)
T ss_dssp TTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCS---------------------------------
T ss_pred cCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCC---------------------------------
Confidence 234799999999999 999999998654322 1 12344433210
Q ss_pred EEEEeeccccceeeccccccccceeeeeeccCCCcccccccc-CCceeeeccccceeEEEEe-cCCceeeEEeecCeecc
Q psy2776 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK-LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIK 347 (803)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~ 347 (803)
...+.+... .+....+..|+.+.|.|.+ +.|.+.+.|+|++....
T Consensus 244 ---------------------------------~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~ 290 (816)
T 3dmk_A 244 ---------------------------------SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTT 290 (816)
T ss_dssp ---------------------------------CCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSS
T ss_pred ---------------------------------CCCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCc
Confidence 011111111 1234566789999999999 89999999999644322
Q ss_pred c------cceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee--------------------------eecC
Q psy2776 348 E------SARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW--------------------------LDFG 395 (803)
Q Consensus 348 ~------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~--------------------------~~~~ 395 (803)
. ..+.. .. ...|.|.++..+|+|.|+|.+.|..+...... +.|.
T Consensus 291 ~~~~~~~~~~~~-~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~ 366 (816)
T 3dmk_A 291 RKQAVVLNDRVK-QV---SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 366 (816)
T ss_dssp CEEECCCSSSEE-EE---TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEE
T ss_pred cCcceecCCceE-ec---cceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEE
Confidence 1 12221 11 23799999999999999999999776433111 0010
Q ss_pred --CCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 396 --SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 396 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
+.+.....|++++..+.. ....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 367 ~~g~p~~~v~W~k~g~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~--------------------- 418 (816)
T 3dmk_A 367 YTGNPIKTVSWMKDGKAIGH-------SESVLRIESVKKEDKGMYQCFVRNDRESAEAS--------------------- 418 (816)
T ss_dssp EEEECCCEEEEEETTEECSC-------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEC---------------------
T ss_pred EeccCCCEEEEEECCEECCC-------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE---------------------
Confidence 012334567887766542 23569999999999999999999998876662
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~ 553 (803)
..+.+......|.+. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.
T Consensus 419 ---------------------~~l~v~~~~~~p~i~---~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~ 474 (816)
T 3dmk_A 419 ---------------------AELKLGGRFDPPVIR---QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474 (816)
T ss_dssp ---------------------CEEECCCSSCCCEEE---EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCT
T ss_pred ---------------------EEEEEccccCCCceE---ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCC
Confidence 233332211112121 11234678899999999999999999999999999998776
Q ss_pred cEEEEe----c-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE---------------------eEeee
Q psy2776 554 ACRIFI----D-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI---------------------IQQQE 607 (803)
Q Consensus 554 ~~~~~~----~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p---------------------~~~~~ 607 (803)
++.... . ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+| +...+
T Consensus 475 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p 554 (816)
T 3dmk_A 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYP 554 (816)
T ss_dssp TEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSS
T ss_pred CcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCC
Confidence 655432 1 123579999999999999999999999999999999998776 22334
Q ss_pred cccccEEEeeeeCC--------ccceEEEcccc-cCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEe-
Q psy2776 608 KNSLKFTKVATLDP--------STLQYTVENLR-DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE- 677 (803)
Q Consensus 608 ~~~~~w~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~- 677 (803)
...+.|.+.+.... ....+.|.++. ..+.|.|+|.|.|..|..... ...+.... +|.+..
T Consensus 555 ~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~-~~~v~v~~---------~p~~~~~ 624 (816)
T 3dmk_A 555 IDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARG-SLEVQVMV---------LPRIIPF 624 (816)
T ss_dssp EEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEE-EEEEEEEC---------CCCCBCC
T ss_pred CCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeee-eEEEEEec---------CCccccc
Confidence 45788999875432 24578899997 689999999999998865322 11111111 222222
Q ss_pred ccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 678 RFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 678 ~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
.+....+.+|+.++|.|.+.+.|.+ .+.|+++|..+..+..+.+... .....|.|.++ +.+|+|.|+|.|.|.+|..
T Consensus 625 ~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~ 703 (816)
T 3dmk_A 625 AFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAV-EASHAGNFTCHARNLAGHQ 703 (816)
T ss_dssp CCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESC-CGGGCEEEEEEEECSSCEE
T ss_pred cccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccC-ChhhCEEEEEEEEeCCccE
Confidence 2234568899999999999876655 8999999999876655554433 45678999999 7999999999999999999
Q ss_pred eeeEEEEEEeeccC---CCCCcccCCccceeeeeeeeEEE
Q psy2776 756 THGARVTVDVEKVG---RPSINSIDIDLNHVHYLAQSTEV 792 (803)
Q Consensus 756 ~~~~~l~V~~~~~~---pp~~~~~~~~~~~~~~~~~~~~~ 792 (803)
+.++.|.|.+++.. |........+..+|+|.+.|.|-
T Consensus 704 ~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~ 743 (816)
T 3dmk_A 704 QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPK 743 (816)
T ss_dssp EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESC
T ss_pred EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCC
Confidence 99999999765532 33333334556689999999774
No 8
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.9e-45 Score=419.56 Aligned_cols=471 Identities=13% Similarity=0.148 Sum_probs=302.2
Q ss_pred EEEcCCCCceeeEEEEEecCCCCC-CCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEE
Q psy2776 24 SLSNALGQASATTKVTLLSAPGAP-DTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYE 102 (803)
Q Consensus 24 ~a~n~~g~~~~~~~l~V~~~p~~p-~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (803)
.+.+..|.....+.|.|..+|... ..+.+....|..++|.|... + ...|... .. .+. .......|.
T Consensus 17 ~~~~~~g~~~~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~---~---~v~W~~~---~~-~~~---~~~~~~~L~ 83 (524)
T 2ec8_A 17 LLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDP---G---FVKWTFE---IL-DET---NENKQNEWI 83 (524)
T ss_dssp CC--------------CCCCCEEESCCSEEECCTTSCEEEEEECT---T---EEEEEEE---SS-SCC---EEECSSEEE
T ss_pred hhhhhcCCCCCeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCC---c---eEEEcCC---Cc-ccc---ccCccceEE
Confidence 345556666667778887777532 23456667899999999963 2 1112211 11 111 223468899
Q ss_pred EeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEE-c
Q psy2776 103 VTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-D 181 (803)
Q Consensus 103 i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~-~ 181 (803)
|.+++.+|+|.|+|.+.+ |. +. ...+.+. .+|.+...+.+..+.+|+.+.|.|.+.+.|.+.+.|++ +
T Consensus 84 I~~~~~~D~G~Y~C~a~n--g~---~~-~~~l~V~-----~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~ 152 (524)
T 2ec8_A 84 TEKAEATNTGKYTCTNKH--GL---SN-SIYVFVR-----DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ 152 (524)
T ss_dssp ESSCCSTTCEEEEEEETT--SC---EE-EEEEECC-----CSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSS
T ss_pred EcccchhhCEEEEEeecC--Cc---ce-EEEEEEC-----CCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccC
Confidence 999999999999999988 42 22 2223332 23333355677888999999999999987778999998 7
Q ss_pred Ceeccce-eEEEecCeeEEEEecCCCCcce-EEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeee
Q psy2776 182 DSLIKGR-NITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRV 258 (803)
Q Consensus 182 ~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (803)
+..+... ++... ....|.|.+++.+|+| .|+|.|.|..+.... .+.|.|...+.
T Consensus 153 g~~l~~~~~~~~~-~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~---------------------- 209 (524)
T 2ec8_A 153 GKPLPKDLRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFK---------------------- 209 (524)
T ss_dssp SCCCCSSCEEEEE-TTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCC----------------------
T ss_pred CcCcCCCCceeEC-CCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCC----------------------
Confidence 7776543 33333 3357999999999999 999999998776543 56676653210
Q ss_pred ccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCcee-
Q psy2776 259 TQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ- 336 (803)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~- 336 (803)
..+.+.. .+....+.+|+.+.|.|.+ +.|.+.
T Consensus 210 ---------------------------------------------~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~~ 243 (524)
T 2ec8_A 210 ---------------------------------------------AVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVY 243 (524)
T ss_dssp ---------------------------------------------SCCEEEC-SCSEEEEETTSCEEEEEEEEESSTTCE
T ss_pred ---------------------------------------------CCCcEEe-cCCcceEEcCCcEEEEEEEecCCCcEE
Confidence 0011111 2333456779999999999 788776
Q ss_pred eEEeecCeec--cccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeee
Q psy2776 337 VKWLKKGKEI--KESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414 (803)
Q Consensus 337 i~W~~~g~~l--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (803)
+.|++++..+ .......+..+.
T Consensus 244 i~W~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 267 (524)
T 2ec8_A 244 STWKRENSQTKLQEKYNSWHHGDF-------------------------------------------------------- 267 (524)
T ss_dssp EEEEETTCSCCCCEEEEEEECSSS--------------------------------------------------------
T ss_pred EEEEeCCCCCccccccccccccCC--------------------------------------------------------
Confidence 9999998874 322221111000
Q ss_pred eeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccce
Q psy2776 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494 (803)
Q Consensus 415 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (803)
.......|.|.+++.+|+|.|+|.|.|..|.... .
T Consensus 268 ---~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~------------------------------------------~ 302 (524)
T 2ec8_A 268 ---NYERQATLTISSARVNDSGVFMCYANNTFGSANV------------------------------------------T 302 (524)
T ss_dssp ---CEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEE------------------------------------------E
T ss_pred ---ccceEEEEEECCCCHHHCEEEEEEEEecCCceEE------------------------------------------E
Confidence 0112346999999999999999999999888766 4
Q ss_pred eeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCc-EEEEecC----CeEEEEE
Q psy2776 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKA-CRIFIDE----ETSTIAI 568 (803)
Q Consensus 495 ~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~-~~~~~~~----~~~~L~i 568 (803)
+.|.|..+|.+... ........+.+|+.+.|.|.+.|.|.|. +.|+|+|..+..... +...... ..+.|.|
T Consensus 303 ~~l~V~~~p~~~~~---~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i 379 (524)
T 2ec8_A 303 TTLEVVDKGFINIF---PMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379 (524)
T ss_dssp EEEEEESSCEEEEE---ESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEE
T ss_pred EEEEEeccCceEee---cCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEE
Confidence 45555555543221 1112357789999999999999999999 999999999887653 2222222 2579999
Q ss_pred eeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 569 ~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 380 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P---------------------------------------------- 413 (524)
T 2ec8_A 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP---------------------------------------------- 413 (524)
T ss_dssp CSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE----------------------------------------------
T ss_pred eecCcccCeEEEEEEEecCceEEEEEEEEEecCC----------------------------------------------
Confidence 9999999999999999999999999999997744
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeecc--------CCCC--
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL--------SSPK-- 718 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~--------~~~~-- 718 (803)
.+...+. +.+| .|.|.+.|.|.|.+.|++++..+. .+.+
T Consensus 414 -------------------------~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~ 462 (524)
T 2ec8_A 414 -------------------------EILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTL 462 (524)
T ss_dssp -------------------------EEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCC
T ss_pred -------------------------eEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceee
Confidence 3433322 3445 999999999999999999977652 1111
Q ss_pred -eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 719 -KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 719 -~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
+....++......+.++...+|+|.|+|.|.|.+|.++..+.|.|+..+.
T Consensus 463 ~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~ 513 (524)
T 2ec8_A 463 NSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513 (524)
T ss_dssp CC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-----
T ss_pred eeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCH
Confidence 11122333322223444245899999999999999999999999975443
No 9
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=1.9e-42 Score=400.55 Aligned_cols=415 Identities=15% Similarity=0.175 Sum_probs=293.3
Q ss_pred eEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCCeeE
Q psy2776 99 TTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIK 177 (803)
Q Consensus 99 ~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~ 177 (803)
..|.|.+++.+|+|.|+|.+.+..|.. +....+ .+ ..+|.+...+....+.+|+.+.|.|.+.+. |.+.+.
T Consensus 75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~--~~~~~l-~V-----~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~ 146 (585)
T 2ocw_A 75 FVVNIAQLSQDDSGRYKCGLGINSRGL--SFDVSL-EV-----SQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKS 146 (585)
T ss_pred EEEEECCCCcccCEEEEEEcccCCCCc--eEEEEE-EE-----ecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEE
Confidence 579999999999999999999877653 222222 22 235666667788889999999999999964 456799
Q ss_pred EEEcCeecc--------------ceeEEEec-----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeeccc
Q psy2776 178 WYKDDSLIK--------------GRNITYEN-----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKE 238 (803)
Q Consensus 178 W~~~~~~~~--------------~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~ 238 (803)
|+|++.... ..++.+.. +..+|.|.+++.+|+|.|+|.|.|..|....++.|.|...+
T Consensus 147 W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~--- 223 (585)
T 2ocw_A 147 LYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE--- 223 (585)
T ss_pred EEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC---
Confidence 999875421 12222221 12389999999999999999999999988888888886542
Q ss_pred ccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeee
Q psy2776 239 SARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLV 318 (803)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (803)
|....+
T Consensus 224 --------------------------------------------------------------------------p~~~~~ 229 (585)
T 2ocw_A 224 --------------------------------------------------------------------------PELVYE 229 (585)
T ss_pred --------------------------------------------------------------------------CceeEE
Confidence 122234
Q ss_pred ccccceeEEEEecCCc---eeeEEe-ecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeec
Q psy2776 319 PHLGDATFQVELSSPD---IQVKWL-KKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDF 394 (803)
Q Consensus 319 ~~g~~~~l~C~~~~p~---~~i~W~-~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 394 (803)
.+|+.+.|.|.++.|. +.+.|+ ++|..... .+...+.. ...
T Consensus 230 ~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~----~~~~~~~~--------~~~----------------------- 274 (585)
T 2ocw_A 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDV----VVNTLGKR--------APA----------------------- 274 (585)
T ss_pred cCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcce----EEeCCCcC--------Ccc-----------------------
Confidence 5699999999996554 789996 88743221 00000000 000
Q ss_pred CCCceeeeeeecCcceeeeeeeEE----ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 395 GSGGWWFESKYKDDSLIKGRNITY----ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
. ..++.+ .++...|.|.+++.+|+|.|+|.|.|. |......
T Consensus 275 ----------------~-~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~----------------- 319 (585)
T 2ocw_A 275 ----------------F-EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGS----------------- 319 (585)
T ss_pred ----------------c-CCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccC-----------------
Confidence 0 001111 133447999999999999999999995 3332100
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCee----EEee--
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEI----SWMK-- 544 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v----~W~~-- 544 (803)
....+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+ .|++
T Consensus 320 --------------------~~~~~~l~V~~~p~~~~~------~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~ 373 (585)
T 2ocw_A 320 --------------------PIQAWQLFVNEESTIPRS------PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQ 373 (585)
T ss_pred --------------------ceeeEEEEEecccccccC------CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccC
Confidence 001455666666654322 23567889999999999999999977 7999
Q ss_pred CCe--eecC---------CCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccc
Q psy2776 545 NGA--EITD---------SKACRIFID--EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 545 ~g~--~i~~---------~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
+|. .+.. ..++.+... .+..+|.|.++..+|+|.|+|.| |..|..+.++.|.|...
T Consensus 374 ~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~---------- 442 (585)
T 2ocw_A 374 NGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG---------- 442 (585)
T ss_pred CCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC----------
Confidence 887 4432 234444432 22346999999999999999999 99999888889888652
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
+|.+. .+....+.+|+.+.
T Consensus 443 ------------------------------------------------------------~p~~~-~~~~~~v~~G~~v~ 461 (585)
T 2ocw_A 443 ------------------------------------------------------------EPNLK-VPGNVTAVLGETLK 461 (585)
T ss_pred ------------------------------------------------------------ccccc-cCCceeEecCCcEE
Confidence 22222 24567889999999
Q ss_pred EEEEEe----ecCCCceEEeeCCeeccCCCC------eE-EEeeCceEEEEEecCCCCCCceeEEEEEEccCcceee-eE
Q psy2776 692 LMAKVK----ASPAPSIVWFRNNKPLLSSPK------KR-EIFDGENIILELKEADSETDAGDYKVVATNELGSATH-GA 759 (803)
Q Consensus 692 L~C~~~----g~p~~~v~W~~~~~~l~~~~~------~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~-~~ 759 (803)
|.|.+. |.|.+.+.|+++|..+..+.. +. +..++....|.|.++ +.+|+|.|+|.|.|.+|.... .+
T Consensus 462 L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~ 540 (585)
T 2ocw_A 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV-TRADEGWYWCGVKQGHFYGETAAV 540 (585)
T ss_pred EEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCC-CcccCeEEEEEeEeCCCccEEEEE
Confidence 999997 778889999999988754321 11 112345578999999 799999999999999997754 48
Q ss_pred EEEEEeec
Q psy2776 760 RVTVDVEK 767 (803)
Q Consensus 760 ~l~V~~~~ 767 (803)
.|.|..++
T Consensus 541 ~l~V~~~p 548 (585)
T 2ocw_A 541 YVAVEERK 548 (585)
T ss_pred EEEEEeee
Confidence 88887655
No 10
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=397.12 Aligned_cols=436 Identities=12% Similarity=0.120 Sum_probs=270.9
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEEE-eecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcc
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLE-SHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASH 129 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~ 129 (803)
.+...+|.+++|.|... +...+...|+. .............+.....|.|.+++.+|+|.|+|.+.+..|... .
T Consensus 57 ~~~v~~g~~~~L~c~~~---~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~--~ 131 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVD---APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT--I 131 (527)
T ss_dssp EEEECSSCCEEEEEECS---CCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE--E
T ss_pred eEEEeccccEEEEEEEe---cCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEE--E
Confidence 35566799999999974 22223332321 111111111211112234599999999999999999998876421 1
Q ss_pred eeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcc
Q psy2776 130 NTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 130 ~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 209 (803)
.+.+..+ ++.+...........|+.+.|.|.+.|+|.|.|.|++++..+.... .............+..+|+
T Consensus 132 ---~~~v~v~----~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~ 203 (527)
T 3qs9_E 132 ---LFTVSIR----NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK-EESPAVVKKEEKVLHELFG 203 (527)
T ss_dssp ---EEEEEEC---------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCS
T ss_pred ---EEEEEEC----CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc-ccCCcEEEEeeeeccccCC
Confidence 1222111 1111111222334567888999999999999999999887654221 1111112223334568999
Q ss_pred eEEEEEEEcCCcCeeeE-EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccc
Q psy2776 210 GRYTCKATNEAGTAETS-CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSD 288 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (803)
|.|+|.|.|..|..... +.|.|...+..
T Consensus 204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--------------------------------------------------- 232 (527)
T 3qs9_E 204 TDIRCCARNELGRECTRLFTIDLNQTPQT--------------------------------------------------- 232 (527)
T ss_dssp SCEEEEEECSSCEEEEECEEEESSSCCCC---------------------------------------------------
T ss_pred EEEEEEEEeCCCcccceEEEEEEeccCcc---------------------------------------------------
Confidence 99999999999976654 56666544210
Q ss_pred cccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEe
Q psy2776 289 LESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIK 366 (803)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~ 366 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.....+......
T Consensus 233 -----------------------~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~-------- 281 (527)
T 3qs9_E 233 -----------------------TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS-------- 281 (527)
T ss_dssp -----------------------SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEE--------
T ss_pred -----------------------CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeec--------
Confidence 1234556679999999999 6999999999999888765332211100
Q ss_pred ecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 367 RVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 367 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
.+ ........|.|.+++.+|+|.|+|.|.|.
T Consensus 282 ----------------------------------------~~--------~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~- 312 (527)
T 3qs9_E 282 ----------------------------------------TN--------RTMIRILFAFVSSVARNDTGYYTCSSSKH- 312 (527)
T ss_dssp ----------------------------------------TT--------TEEEEEEEEEESSCCGGGCEEEEEEETTE-
T ss_pred ----------------------------------------cC--------cceeeEEEEEEccCCcccCeEEEEEEEeC-
Confidence 00 00012345999999999999999999997
Q ss_pred eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeeccee
Q psy2776 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQW 526 (803)
Q Consensus 447 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v 526 (803)
... .+.|.|..+|.+... .......+.+|+.+
T Consensus 313 --~~~------------------------------------------~~~L~V~~~p~i~~~----~~~~~~~v~~G~~v 344 (527)
T 3qs9_E 313 --PSQ------------------------------------------SALVTIVEKGFINAT----NSSEDYEIDQYEEF 344 (527)
T ss_dssp --EEE------------------------------------------EEEEEEC--CEEECC----CSCCEECCCTTCCC
T ss_pred --CCc------------------------------------------eEEEEEEccCccccc----cCcccEEEcCCCeE
Confidence 222 344455544432111 01123557789999
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEee
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQ 606 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~ 606 (803)
.|.|.+.|.|.|.++|+|+|..+....+.. .++..|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 345 ~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~------ 414 (527)
T 3qs9_E 345 CFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------ 414 (527)
T ss_dssp CEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C------
T ss_pred EEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec------
Confidence 999999999999999999999997654421 2456899999999999999999999999999998888866
Q ss_pred ecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEec
Q psy2776 607 EKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686 (803)
Q Consensus 607 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 686 (803)
+|.|...+.
T Consensus 415 -----------------------------------------------------------------~P~i~~~~~------ 423 (527)
T 3qs9_E 415 -----------------------------------------------------------------KPQVLAEAS------ 423 (527)
T ss_dssp -----------------------------------------------------------------CCEEEECCC------
T ss_pred -----------------------------------------------------------------CCeEEEeCC------
Confidence 555554431
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCC-------------eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-------------KREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-------------~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
| ..|.|.+.|.|.|.|.|++++........ ..........+|.|.. .+|+|.|+|.|.|.+|
T Consensus 424 ~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~---~~d~G~Y~C~A~N~~G 498 (527)
T 3qs9_E 424 A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE---AIKGFLVKCCAYNSLG 498 (527)
T ss_dssp C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCC---SSCSCEEEEEEECSSC
T ss_pred C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEE---cCCCEEEEEEEEeCCC
Confidence 2 35899999999999999998655421110 0000111233444544 4699999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
.+++.+.|.|.
T Consensus 499 ~~~~~~~L~V~ 509 (527)
T 3qs9_E 499 TSCETILLNSP 509 (527)
T ss_dssp EEEEEEEC---
T ss_pred CceeEEEEecC
Confidence 99999998774
No 11
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=379.65 Aligned_cols=393 Identities=14% Similarity=0.151 Sum_probs=241.9
Q ss_pred cCCeEEEEEEEEccCccCCCc-ceeeE---------EEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeE
Q psy2776 108 TKHEYMFRVAAVNAIGTGPAS-HNTRY---------VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177 (803)
Q Consensus 108 ~~d~g~y~c~a~~~~g~~~~s-~~~~~---------~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~ 177 (803)
..+.|.|+|...+..+..... ..+.+ +....+ +..+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~--p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~ 81 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALR--PQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81 (423)
T ss_dssp ------------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEE
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccC--CCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEE
Confidence 467899999998775432111 11111 111110 111233444557899999999999999999999999
Q ss_pred EEEcCeecccee-EEEe-cCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEE
Q psy2776 178 WYKDDSLIKGRN-ITYE-NNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVI 255 (803)
Q Consensus 178 W~~~~~~~~~~~-~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~ 255 (803)
|++++..+.... +..+ .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|.....
T Consensus 82 W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~--------------- 146 (423)
T 3qs7_E 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR--------------- 146 (423)
T ss_dssp EEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEE---------------
T ss_pred EEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcccccc---------------
Confidence 999997765321 1111 12357999999999999999999999998887888888754211000
Q ss_pred eeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc
Q psy2776 256 KRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD 334 (803)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~ 334 (803)
.| ..+..|+.+.|.|.+ |.|.
T Consensus 147 --------------------------------------------------------~p--~~~~~~~~~~L~C~a~G~P~ 168 (423)
T 3qs7_E 147 --------------------------------------------------------RP--YFRKMENQDALVCISESVPE 168 (423)
T ss_dssp --------------------------------------------------------EE--EEEECSSSSCEEEEEEESSC
T ss_pred --------------------------------------------------------CC--cEeccCCceEEEEEEeeecC
Confidence 00 112347788999999 9999
Q ss_pred eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeee
Q psy2776 335 IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGR 414 (803)
Q Consensus 335 ~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (803)
|.+.|+|++..+...... . ..+
T Consensus 169 P~i~W~k~~~~~~~~~~~-~-~~~-------------------------------------------------------- 190 (423)
T 3qs7_E 169 PIVEWVLCDSQGESCKEE-S-PAV-------------------------------------------------------- 190 (423)
T ss_dssp CEEEEEEC---------------C--------------------------------------------------------
T ss_pred CeEEEEECCCCCcccccc-c-ccc--------------------------------------------------------
Confidence 999999987654321000 0 000
Q ss_pred eeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccce
Q psy2776 415 NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRT 494 (803)
Q Consensus 415 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (803)
+ ......| ...|+|.|+|.|.|..|..... .
T Consensus 191 -~--~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~~-----------------------------------------~ 221 (423)
T 3qs7_E 191 -V--KKEEKVL-----HELFGTDIRCCARNELGRECTR-----------------------------------------L 221 (423)
T ss_dssp -E--EECCSEE-----CCCCSSCEEEEEECSSCEEEEE-----------------------------------------C
T ss_pred -c--cccceEE-----ecccCeEEEEEEEcCCCCccee-----------------------------------------e
Confidence 0 0000011 5689999999999998876552 4
Q ss_pred eeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEE--e----cCCeEEEE
Q psy2776 495 TNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIF--I----DEETSTIA 567 (803)
Q Consensus 495 ~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~--~----~~~~~~L~ 567 (803)
+.|.|..+|..+.. ...+.+|+.+.|.|.+.| .|.|.+.|+|+|..+.....+... . ......|.
T Consensus 222 ~~l~V~~~p~~~~~--------~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 293 (423)
T 3qs7_E 222 FTIDLNQTPQTTLP--------QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293 (423)
T ss_dssp EEEESSSCCCSSTT--------EEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEE
T ss_pred EEEEEecCCccCCC--------ceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEE
Confidence 55666666654322 467889999999999998 677999999999987654322111 1 11235799
Q ss_pred EeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 568 i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
|.++..+|+|.|+|.|.|. .+.++.|.|..+|
T Consensus 294 I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p--------------------------------------------- 325 (423)
T 3qs7_E 294 VSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG--------------------------------------------- 325 (423)
T ss_dssp ESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC---------------------------------------------
T ss_pred EeecCHHHCEEEEEEEecC---CCceEEEEEEeCC---------------------------------------------
Confidence 9999999999999999998 7788888886633
Q ss_pred CCCCCccceeeeeeecccCCCCCCCCeeEecc--ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC
Q psy2776 648 GLGPEATTELVALATHATLGSPGQAPLFIERF--EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG 725 (803)
Q Consensus 648 g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~ 725 (803)
.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+|+|.+|..+.+. ...
T Consensus 326 --------------------------~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~---~~~ 376 (423)
T 3qs7_E 326 --------------------------FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG---LDN 376 (423)
T ss_dssp --------------------------EEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB---CSS
T ss_pred --------------------------cceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccc---ccC
Confidence 222222 3466888999999999999999999999999998655310 001
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccC
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 769 (803)
. ..+.+... ..+|+|.|+|.|+|.+|..+.++.|.|...+.+
T Consensus 377 ~-~~~~~~~~-~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~ 418 (423)
T 3qs7_E 377 G-YSISKFCN-HKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418 (423)
T ss_dssp S-SEEEEECC-CTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred C-cEEEEEec-ccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence 1 12223455 579999999999999999999999999765544
No 12
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.4e-42 Score=379.06 Aligned_cols=368 Identities=20% Similarity=0.326 Sum_probs=265.8
Q ss_pred CCCeeeccCcCeee---ecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecC-CCCcceEEEEE
Q psy2776 143 EAPVIQEPLKDSVA---GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNC-SESSEGRYTCK 215 (803)
Q Consensus 143 ~~p~i~~~~~~~~v---~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v-~~~d~G~Y~C~ 215 (803)
.+|.|...|....+ .+|+.+.|.|.+.|.|.|+|.|+|++..+... ++...+ ..|.|.++ ..+|+|.|+|.
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--g~l~i~~~~~~~D~G~Y~C~ 81 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQCI 81 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEET--TEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEEC--CEEEEcCCCCcccCEEEEEE
Confidence 34666666666655 57999999999999999999999999988632 333333 35777776 78999999999
Q ss_pred EEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 216 ATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 216 a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
|.|..|... ..+.|.+...+.
T Consensus 82 A~N~~G~~~s~~~~l~v~~~~~---------------------------------------------------------- 103 (384)
T 3kld_A 82 ATNSFGTIVSREAKLQFAYLEN---------------------------------------------------------- 103 (384)
T ss_dssp EEETTEEEECCCEEEEEEEECC----------------------------------------------------------
T ss_pred EEcCcccEEecceEEEEecccc----------------------------------------------------------
Confidence 999998653 345555543310
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
+.........+.+|+.+.|.|.+ +.|.+.+.|++++.++....+..+..
T Consensus 104 -------------~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---------------- 154 (384)
T 3kld_A 104 -------------FKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQ---------------- 154 (384)
T ss_dssp -------------CSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECT----------------
T ss_pred -------------cccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEc----------------
Confidence 11111223445679999999986 56789999999988775433221111
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
....|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 155 ------------------------------------------------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~ 186 (384)
T 3kld_A 155 ------------------------------------------------ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186 (384)
T ss_dssp ------------------------------------------------TTCCEEESSCCGGGCEEEEEEEEETTTTEEEE
T ss_pred ------------------------------------------------CCCcEEEeecCHHHCceEEEEEecccccceee
Confidence 11237788888888999999998877654331
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
. .+..+.+... .+....+|. +.........+.+|+.+.|.|.+
T Consensus 187 ~----~~~~~~v~~~----------------------------~~~~~~~p~-----~~~~~~~~~~~~~G~~v~l~C~~ 229 (384)
T 3kld_A 187 G----PPTPLILRND----------------------------GVMGEYEPK-----IEVQFPETVPAEKGTTVKLECFA 229 (384)
T ss_dssp C----CCEEEEEEEE----------------------------EECCCEEEE-----EEEECCSEEEEETTSCEEEEEEE
T ss_pred C----CceEEEEccC----------------------------CcccccCCc-----eeecCCCceEecCCCcEEEEEEE
Confidence 1 0000111000 000011111 11111234667889999999999
Q ss_pred cCcCCCeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccc
Q psy2776 533 FGFPRPEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 533 ~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
.|.|.|.+.|+|+ +..+.... . .......|.|.++..+|+|.|+|.|.|..|....+..|.|..
T Consensus 230 ~g~P~p~i~W~k~~~~~~~~~~--~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~----------- 294 (384)
T 3kld_A 230 LGNPVPTILWRRADGKPIARKA--R--RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA----------- 294 (384)
T ss_dssp EEESCCEEEEEETTCCCCCTTC--E--ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-----------
T ss_pred eecCCCcEEEEeCCCccccccc--e--ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec-----------
Confidence 9999999999995 44554322 1 123456899999999999999999999999999899998876
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
+|.|...+....+.+|+.+.
T Consensus 295 ------------------------------------------------------------~P~~~~~~~~~~v~~g~~v~ 314 (384)
T 3kld_A 295 ------------------------------------------------------------QPNWVQIINDIHVAMEESVF 314 (384)
T ss_dssp ------------------------------------------------------------EEEEEECCCCEEECTTCCEE
T ss_pred ------------------------------------------------------------CCccccCCCceEecCCCCEE
Confidence 45566666778899999999
Q ss_pred EEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 692 L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|.+.|.|.|.+.|+|||.++..+.++.+. +. +|.|.++ ..+|+|.|+|.|.|.+|....++.|.|.
T Consensus 315 l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--~~--~L~i~~v-~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQIE--QG--TLNITIV-NLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp EECEEEEESCCEEEEEETTEECCCBTTEEEE--TT--EEEESSC-CGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEeECCccCCCeEEEEECCEECCCCccEEEe--CC--EEEEeec-ChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 9999999999999999999999887776542 33 6999999 7899999999999999999999999984
No 13
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=5.3e-42 Score=377.35 Aligned_cols=368 Identities=21% Similarity=0.293 Sum_probs=279.3
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecC-----CCCcceEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNC-----SESSEGRY 212 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v-----~~~d~G~Y 212 (803)
.....+...|.+..+.+|+.+.|.|.+.+ .|.+.+.|+|++..+.. .+.... ....|.|.++ +.+|+|.|
T Consensus 19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~D~G~Y 97 (403)
T 3laf_A 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL-PNGSLLIQNILHSRHHKPDEGLY 97 (403)
T ss_dssp CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEEC-TTSCEEECSCCCBTTBCSSCEEE
T ss_pred ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEe-cCCcEEEeeeeccCCCCCcceEE
Confidence 34566777889999999999999999986 68889999999998753 222222 2345778777 77899999
Q ss_pred EEEEEcCCcCeee--EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 213 TCKATNEAGTAET--SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 213 ~C~a~n~~g~~~~--s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
+|.+.|..+.... .+.|.|..++
T Consensus 98 ~C~~~~~~~~~~~s~~~~l~v~~p~------------------------------------------------------- 122 (403)
T 3laf_A 98 QCEASLGDSGSIISRTAKVMVAGPL------------------------------------------------------- 122 (403)
T ss_dssp EEEEECGGGCEEECCCEEEEECCCC-------------------------------------------------------
T ss_pred EEEEEeCCCccEEEEEEEEEecCCC-------------------------------------------------------
Confidence 9999976544332 3445444321
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc---eeEEEEcCceeEEEEe
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA---RHIITSRGTQRKLVIK 366 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~---~~~~~~~~~~~~l~i~ 366 (803)
.+. ..+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.... +...
T Consensus 123 ----------------~~~-~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~------------ 173 (403)
T 3laf_A 123 ----------------RFL-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV------------ 173 (403)
T ss_dssp ----------------EEC-SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEE------------
T ss_pred ----------------ccc-cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEE------------
Confidence 111 12233455679999999999 89999999999988775311 1111
Q ss_pred ecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 367 RVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 367 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
.....|.|.+++.+|+|.|+|.|.|..
T Consensus 174 -----------------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 200 (403)
T 3laf_A 174 -----------------------------------------------------LPSGALQISRLQPGDSGVYRCSARNPA 200 (403)
T ss_dssp -----------------------------------------------------CTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred -----------------------------------------------------cCCceEEEcccccccCEEEEEEEEcCC
Confidence 111248899999999999999999987
Q ss_pred eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeeccee
Q psy2776 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQW 526 (803)
Q Consensus 447 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v 526 (803)
+..... .+.+.+..+|..+.............+.+|+.+
T Consensus 201 ~~~~~~-----------------------------------------~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~ 239 (403)
T 3laf_A 201 STRTGN-----------------------------------------EAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239 (403)
T ss_dssp CCCBCC-----------------------------------------CEEEEEECCCCCCEEEEEEECCCCEEEETTSCE
T ss_pred Cceecc-----------------------------------------ceeEEEecCCCcccCceEecCCCceEecCCCcE
Confidence 654431 344455555544333223333345778899999
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEee
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQ 606 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~ 606 (803)
.|.|.+.|.|.+.+.|++++..+.......... .+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 240 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------ 311 (403)
T 3laf_A 240 VLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL--GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------ 311 (403)
T ss_dssp EECCEEEEESCCEEEEEETTEECCCSSSSEEEE--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------
T ss_pred EEEEEcCCCCCCeEEEEECCeeccCCCceEEEC--CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC------
Confidence 999999999999999999999887653322222 245799999999999999999999999999999998876
Q ss_pred ecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEec
Q psy2776 607 EKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKE 686 (803)
Q Consensus 607 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 686 (803)
+|.+...+....+.+
T Consensus 312 -----------------------------------------------------------------~p~~~~~~~~~~~~~ 326 (403)
T 3laf_A 312 -----------------------------------------------------------------PPWFLNHPSNLYAYE 326 (403)
T ss_dssp -----------------------------------------------------------------EEEEEECCCCEECCT
T ss_pred -----------------------------------------------------------------CCcEeecCcceEEec
Confidence 455666666778889
Q ss_pred CCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 687 KGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 687 g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+... ..|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|+.
T Consensus 327 g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~---~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 327 SMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGG---SNLRILGV-VKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp TCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETT---TEEEESSC-CGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred CCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecC---ccEEEecc-ccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 99999999999999999999999999988777665432 36999999 78999999999999999999999999853
No 14
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=4.3e-41 Score=375.93 Aligned_cols=417 Identities=17% Similarity=0.194 Sum_probs=272.5
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCe-EEEEEEeecCCCceeEEEeee-----eeeEEEEeccccCCeEEEEEEEEccCcc
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPV-TGYVLESHDKDEFMVWNKIET-----TSTTYEVTKLTTKHEYMFRVAAVNAIGT 124 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~c~a~~~~g~ 124 (803)
......|..++|.|.... ..+. .++. ..|.+.+. ....|.|.+++. |+| |+|.+.+..+.
T Consensus 8 ~~~v~~G~~v~L~C~~~g---p~p~~~~~~---------~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~ 73 (450)
T 1z7z_I 8 KVILPRGGSVLVTCSTSC---DQPMLLGIE---------TPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQ 73 (450)
T ss_dssp EEEEETTEEEEEEEECCS---SCCCEEEEC---------SSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred ceEEecCCcEEEEEEccC---CCccccccc---------ceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCc
Confidence 345567999999999743 2221 1110 13333332 235799999987 999 99999755432
Q ss_pred CCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC---eeEEEEcCeeccceeEEEecCeeEEEE
Q psy2776 125 GPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP---DIKWYKDDSLIKGRNITYENNVARFTV 201 (803)
Q Consensus 125 ~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~L~i 201 (803)
.+....+.+.. .|..+...+.+..+.+|+.+.|.|.+.+.|++ .|.|+|++..+.............|.|
T Consensus 74 --~~~~~~l~V~~-----~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i 146 (450)
T 1z7z_I 74 --STAKTFLTVYW-----TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV 146 (450)
T ss_dssp --EEEECEEEEEB-----CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEE
T ss_pred --ceeEEEEEEEe-----CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEE
Confidence 22222222221 23334355667888999999999999998888 899999998876543222334568999
Q ss_pred ecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 202 VNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
.++..+|+|.|+|.|.|..|.......+.+.... .+.+.
T Consensus 147 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~----------------~l~v~------------------------- 185 (450)
T 1z7z_I 147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPY----------------QLQTF------------------------- 185 (450)
T ss_dssp ECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCE----------------ECEEC-------------------------
T ss_pred EeeccccCceEEEEEEcccCCCCceEEeeccCcc----------------ceeee-------------------------
Confidence 9999999999999999988754322222111110 00000
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCce---eeeccccceeEEEEe-cC-C--ceeeEEeecCeeccccceeEE
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSV---TLVPHLGDATFQVEL-SS-P--DIQVKWLKKGKEIKESARHII 354 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~l~C~~-~~-p--~~~i~W~~~g~~l~~~~~~~~ 354 (803)
..+ ...|.. ..+.+|+.+.|.|.+ +. | .+.+.|+++|..+.. ....
T Consensus 186 --------------------~~~-----~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~ 238 (450)
T 1z7z_I 186 --------------------VLP-----ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTY 238 (450)
T ss_dssp --------------------CCC-----SSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEE
T ss_pred --------------------ccC-----CCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEe
Confidence 000 000111 456679999999999 66 7 799999999988865 2111
Q ss_pred EEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCC
Q psy2776 355 TSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS 434 (803)
Q Consensus 355 ~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 434 (803)
..++. ...+.+ +++.+|
T Consensus 239 ~~~~~--------------------------------------------------------------~~~~~~-~v~~~d 255 (450)
T 1z7z_I 239 GNDSF--------------------------------------------------------------SAKASV-SVTAED 255 (450)
T ss_dssp ETTEE--------------------------------------------------------------EEEEEE-ECCGGG
T ss_pred cCCce--------------------------------------------------------------eEEEEE-EeEhhh
Confidence 11000 001122 678899
Q ss_pred ce--eEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeee
Q psy2776 435 EG--RYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVD 512 (803)
Q Consensus 435 ~G--~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~ 512 (803)
+| .|+|.|.|..|.... ...|.|...|. |.+..
T Consensus 256 ~G~~~Y~C~a~n~~g~~~~------------------------------------------~~~l~V~~~~~-p~i~~-- 290 (450)
T 1z7z_I 256 EGTQRLTCAVILGNQSQET------------------------------------------LQTVTIYSFPA-PNVIL-- 290 (450)
T ss_dssp CEEEEEEEEEEETTEEEEE------------------------------------------EEEEEEECCCC-CEEEE--
T ss_pred CCcEEEEEEEccCCccEEE------------------------------------------EEEEEEecCCC-CeEec--
Confidence 99 999999999887766 33444544332 22211
Q ss_pred ccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-C--
Q psy2776 513 SNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-S-- 589 (803)
Q Consensus 513 ~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-~-- 589 (803)
....+.+|+.+.|.|.+. |.|.++| +|..+... +....|.|.++..+|+|.|+|.|.|..+ .
T Consensus 291 ---~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~ 355 (450)
T 1z7z_I 291 ---TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 355 (450)
T ss_dssp ---SCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEE
T ss_pred ---CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCccc
Confidence 245789999999999997 8899999 77766221 1235899999999999999999997655 3
Q ss_pred -eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 590 -TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 590 -~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
...++.|.|..+|
T Consensus 356 ~~~~~~~l~V~~~P------------------------------------------------------------------ 369 (450)
T 1z7z_I 356 HKNQTRELRVLYGP------------------------------------------------------------------ 369 (450)
T ss_dssp EEEEEEECEEEEEE------------------------------------------------------------------
T ss_pred ccceeEEEEEecCC------------------------------------------------------------------
Confidence 3467778776644
Q ss_pred CCCCCeeEec--cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 669 PGQAPLFIER--FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 669 ~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.+... +....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ +.. + ++ +.+|+|.|+|
T Consensus 370 -----~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~--------g~~--~---~v-~~~d~G~Y~C 430 (450)
T 1z7z_I 370 -----RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------GES--V---TV-TRDLEGTYLC 430 (450)
T ss_dssp -----ECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------TSC--E---EC-CGGGCEEEEE
T ss_pred -----ceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC--------CCe--E---eE-ehhhCeEEEE
Confidence 23222 24568899999999999999999999999998854433 221 2 45 6799999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+|.++.++.|.|.
T Consensus 431 ~a~N~~G~~~~~~~l~V~ 448 (450)
T 1z7z_I 431 RARSTQGEVTREVTVNVL 448 (450)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCceeEEEEEEEE
Confidence 999999999999999985
No 15
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=1.9e-41 Score=372.92 Aligned_cols=375 Identities=21% Similarity=0.368 Sum_probs=273.0
Q ss_pred CCCCeeec-cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEe----cCCCCcceEEE
Q psy2776 142 AEAPVIQE-PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVV----NCSESSEGRYT 213 (803)
Q Consensus 142 ~~~p~i~~-~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~----~v~~~d~G~Y~ 213 (803)
..+|.|.. .+.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++.......+|.|. +++.+|+|.|+
T Consensus 14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~ 93 (404)
T 3p3y_A 14 TQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93 (404)
T ss_dssp CCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEE
T ss_pred cCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEE
Confidence 45677765 46778899999999999999999999999999987752 233333344566665 88999999999
Q ss_pred EEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 214 CKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 214 C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|.|.|..|... ..+.|.|...+...
T Consensus 94 C~a~n~~g~~~s~~~~l~V~~~p~~~------------------------------------------------------ 119 (404)
T 3p3y_A 94 CFARNKFGTALSNRIRLQVSKSPLWP------------------------------------------------------ 119 (404)
T ss_dssp EEEECSSCEEEEEEEEEEECCCCCCC------------------------------------------------------
T ss_pred EEEEcCCCeEeeeeEEEEEeccCccc------------------------------------------------------
Confidence 99999988764 45677776553111
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCee-ccccceeEEEEcCceeEEEEeecC
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKE-IKESARHIITSRGTQRKLVIKRVT 369 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~-l~~~~~~~~~~~~~~~~l~i~~~~ 369 (803)
...+....+.+|+.+.|.|.+ +.|.+.+.|++++.. +....+..+..++
T Consensus 120 -----------------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----------- 171 (404)
T 3p3y_A 120 -----------------KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG----------- 171 (404)
T ss_dssp -----------------CCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTS-----------
T ss_pred -----------------cCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCC-----------
Confidence 111122455679999999997 688999999998643 3333222221111
Q ss_pred CCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCC-ceeEEEEeeCCcee
Q psy2776 370 QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS-EGRYTCKATNEAGT 448 (803)
Q Consensus 370 ~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~~~~g~ 448 (803)
.|.|.+++.+| .|.|+|.|.|..+.
T Consensus 172 ------------------------------------------------------~l~i~~v~~~d~~G~Y~C~a~n~~~~ 197 (404)
T 3p3y_A 172 ------------------------------------------------------DLYFSNVMLQDMQTDYSCNARFHFTH 197 (404)
T ss_dssp ------------------------------------------------------CEEESSCCSGGGSSCBEEEEECTTTC
T ss_pred ------------------------------------------------------cEEEEeeeeccCCcceEEEEEecccc
Confidence 37788888888 59999999988775
Q ss_pred eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEE
Q psy2776 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528 (803)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l 528 (803)
...... .+.+.+..... .+..+|.+... ........+.+|+.+.|
T Consensus 198 ~~~~~~----~~~l~v~~~~~----------------------------~~~~~p~~~~~---~~~~~~~~~~~G~~v~l 242 (404)
T 3p3y_A 198 TIQQKN----PFTLKVLTTRG----------------------------VAERTPSFMYP---QGTASSQMVLRGMDLLL 242 (404)
T ss_dssp CEEECC----CBCEEEECCSC----------------------------CCCCCCCBSSS---CSSEEEEEEETTSCEEE
T ss_pred ceeccC----ceeEEEeccCC----------------------------ccccCCccccc---cCCCCCceEecCCCEEE
Confidence 443211 01111111000 01112221111 00112466889999999
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeec
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEK 608 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~ 608 (803)
.|.+.|.|.+.+.|+++|..+..... .. ...+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 243 ~C~~~g~p~~~v~W~~~~~~~~~~~~-~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------- 311 (404)
T 3p3y_A 243 ECIASGVPTPDIAWYKKGGDLPSDKA-KF--ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-------- 311 (404)
T ss_dssp ECCBCCSSCCEEEEEETTBCCCTTTE-EE--EGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE--------
T ss_pred EEEECCCCCCcEEEEECCEECCCCcc-cc--cccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC--------
Confidence 99999999999999999998876543 22 22356899999999999999999999999999999998876
Q ss_pred ccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCC
Q psy2776 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKG 688 (803)
Q Consensus 609 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~ 688 (803)
+|.+...+....+.+|+
T Consensus 312 ---------------------------------------------------------------~p~~~~~~~~~~v~~g~ 328 (404)
T 3p3y_A 312 ---------------------------------------------------------------APYWLDEPKNLILAPGE 328 (404)
T ss_dssp ---------------------------------------------------------------EEEEEECCCCEEECTTC
T ss_pred ---------------------------------------------------------------CCeeeccCCcceeecCC
Confidence 45566666778899999
Q ss_pred eEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 689 TIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 689 ~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.+.|.|.+.|.|.|.+.|+++|..+..+.. ......+. .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 329 ~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 329 DGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDT-QISSRAVYQCNTSNEHGYLLANAFVSVL 402 (404)
T ss_dssp CEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSC-CSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred cEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCC--EEEEeec-CHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 999999999999999999999999876542 12222333 7999999 7999999999999999999999998873
No 16
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=5e-41 Score=368.54 Aligned_cols=371 Identities=20% Similarity=0.278 Sum_probs=272.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccce--eEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKGR--NITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+ .|.+.+.|+|++..+... .........+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 83 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET 83 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEe
Confidence 46889998889999999999999999998 899999999999887643 334444567899999999999999999999
Q ss_pred CCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 219 EAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 219 ~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
..|... ..+.|.|...+.+..
T Consensus 84 ~~g~~~s~~~~l~v~~~~~p~~---------------------------------------------------------- 105 (395)
T 1bih_A 84 PAGVASSRVISFRKTYLIASPA---------------------------------------------------------- 105 (395)
T ss_dssp TTEEEECCCEEEEEEEEECCCC----------------------------------------------------------
T ss_pred CCCeEEeEEEEEEEEEeecCCc----------------------------------------------------------
Confidence 888654 235565554321000
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCe---eccc----cceeEEEEcCceeEEEEeec
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGK---EIKE----SARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~---~l~~----~~~~~~~~~~~~~~l~i~~~ 368 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|++++. +... ..++.+.
T Consensus 106 --------------~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~------------- 158 (395)
T 1bih_A 106 --------------KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG------------- 158 (395)
T ss_dssp --------------EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-------------
T ss_pred --------------CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc-------------
Confidence 0112334579999999996 78999999999862 2111 1111111
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce---eEEEEeeCC
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG---RYTCKATNE 445 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~a~~~ 445 (803)
. ...|.|.+++.+|+| .|+|.|.|.
T Consensus 159 ---------------------------------------------------~-~~~L~i~~v~~~d~G~~~~Y~C~a~n~ 186 (395)
T 1bih_A 159 ---------------------------------------------------P-DGNLYFTIVTKEDVSDIYKYVCTAKNA 186 (395)
T ss_dssp ---------------------------------------------------T-TSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred ---------------------------------------------------C-CCcEEEEEEeeccCCCceEEEEEEEec
Confidence 1 114889999999999 999999998
Q ss_pred ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecce
Q psy2776 446 AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQ 525 (803)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~ 525 (803)
.|....... ...+...... ........+|. + ......+.+|+.
T Consensus 187 ~~~~~~~~~--------~~~~~~~~~~---------------------~~~~~~~~~p~-----~---~~~~~~~~~G~~ 229 (395)
T 1bih_A 187 AVDEEVVLV--------EYEIKGVTKD---------------------NSGYKGEPVPQ-----Y---VSKDMMAKAGDV 229 (395)
T ss_dssp TCSSCEEEE--------EEEECCCBCC---------------------SSCCCCCCEEE-----E---ECCSEEEETTSC
T ss_pred ccceEEEee--------eEEecccccc---------------------cccccCCcCce-----e---cCCceEEECCCc
Confidence 877554210 0000000000 00000011111 1 123577899999
Q ss_pred eEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE--ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE-EEEEEEeeeE
Q psy2776 526 WKVEVKYFGFPRPEISWMKNGAEITDSKACRIF--IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL-DLSLQVLGYI 602 (803)
Q Consensus 526 v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~-s~~l~V~~~p 602 (803)
+.|.|.+.|.|.+.+.|+|+|..+......++. ....+..|.|.++..+|+|.|+|.|.|..|.... ++.|.|..
T Consensus 230 v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~-- 307 (395)
T 1bih_A 230 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-- 307 (395)
T ss_dssp EEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE--
T ss_pred EEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc--
Confidence 999999999999999999999988765333332 2233458999999999999999999999999665 88888876
Q ss_pred eEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce-
Q psy2776 603 IQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE- 681 (803)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~- 681 (803)
+|.|...+..
T Consensus 308 ---------------------------------------------------------------------~P~~~~~~~~~ 318 (395)
T 1bih_A 308 ---------------------------------------------------------------------APKYEQKPEKV 318 (395)
T ss_dssp ---------------------------------------------------------------------EEEEEECCCSE
T ss_pred ---------------------------------------------------------------------CCccccCCCcc
Confidence 4455555555
Q ss_pred eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 682 KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 682 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
..+.+|+.+.|.|.+.|.|.|.+.|+++|.++..+ ++.+. +. .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|
T Consensus 319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~~~l 392 (395)
T 1bih_A 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGV-KNGDKGYYGCRATNEHGDKYFETLV 392 (395)
T ss_dssp EEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSC-CSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred eEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeC-CcccCEEEEEEEEccCCCceEEEEE
Confidence 67899999999999999999999999999998655 54432 33 7999999 7999999999999999999999988
Q ss_pred EE
Q psy2776 762 TV 763 (803)
Q Consensus 762 ~V 763 (803)
.|
T Consensus 393 ~V 394 (395)
T 1bih_A 393 QV 394 (395)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 17
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=7.4e-41 Score=381.62 Aligned_cols=379 Identities=16% Similarity=0.196 Sum_probs=277.4
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..||.|...+.+..+.+|+.++|.|.+.+ .+.|+|++..+. .......|.|.+++.+|+|.|+|.+.| |
T Consensus 34 ~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g 102 (524)
T 2ec8_A 34 PSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET-----NENKQNEWITEKAEATNTGKYTCTNKH--G 102 (524)
T ss_dssp CCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC-----EEECSSEEEESSCCSTTCEEEEEEETT--S
T ss_pred CCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc-----ccCccceEEEcccchhhCEEEEEeecC--C
Confidence 46788887777888999999999999987 899999998662 344567899999999999999999999 5
Q ss_pred CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccC
Q psy2776 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESK 301 (803)
Q Consensus 222 ~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (803)
. ..++.|.|..++.
T Consensus 103 ~-~~~~~l~V~~p~~----------------------------------------------------------------- 116 (524)
T 2ec8_A 103 L-SNSIYVFVRDPAK----------------------------------------------------------------- 116 (524)
T ss_dssp C-EEEEEEECCCSSC-----------------------------------------------------------------
T ss_pred c-ceEEEEEECCCCc-----------------------------------------------------------------
Confidence 3 5556666653310
Q ss_pred CCccccccccCCceeeeccccceeEEEEe-cCCceeeEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
++ ..+....+.+|+.+.|.|.+ +.|.+.+.|++ +|..+..+.++.+...+
T Consensus 117 ------~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~--------------------- 168 (524)
T 2ec8_A 117 ------LF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA--------------------- 168 (524)
T ss_dssp ------SB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTT---------------------
T ss_pred ------cc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCc---------------------
Confidence 01 12233445679999999999 55569999988 78888765544333222
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
.|.|.+++.+|+| .|+|.|.|..+.....
T Consensus 169 --------------------------------------------~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~------ 198 (524)
T 2ec8_A 169 --------------------------------------------GIMIKSVKRAYHRLCLHCSVDQEGKSVLSE------ 198 (524)
T ss_dssp --------------------------------------------EEEEESCCGGGTTCEEEEEEC----CCCCC------
T ss_pred --------------------------------------------cEEEeccchhhCCceEEEEEEECCceEEEE------
Confidence 3889999999999 9999999876554331
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC----CCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ----SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.|.|. .+|.+ . ..+....+.+|+.+.|.|.+.|
T Consensus 199 -----------------------------------~~~l~V~~~~~~~p~i---~---~~~~~~~v~~G~~v~L~C~~~g 237 (524)
T 2ec8_A 199 -----------------------------------KFILKVRPAFKAVPVV---S---VSKASYLLREGEEFTVTCTIKD 237 (524)
T ss_dssp -----------------------------------CEECCEECCCCSCCEE---E---CSCSEEEEETTSCEEEEEEEEE
T ss_pred -----------------------------------EEEEEEEeCCCCCCcE---E---ecCCcceEEcCCcEEEEEEEec
Confidence 3344443 23321 1 1223457899999999999999
Q ss_pred cCCCe-eEEeeCCeee--cCCCcEEEE---ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeec
Q psy2776 535 FPRPE-ISWMKNGAEI--TDSKACRIF---IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEK 608 (803)
Q Consensus 535 ~p~~~-v~W~~~g~~i--~~~~~~~~~---~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~ 608 (803)
.|.+. +.|++++..+ ....+..+. .....+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 238 ~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~------- 310 (524)
T 2ec8_A 238 VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK------- 310 (524)
T ss_dssp SSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESS-------
T ss_pred CCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEecc-------
Confidence 99886 9999999873 322222221 1123579999999999999999999999999999999998763
Q ss_pred ccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecc---ceeEEe
Q psy2776 609 NSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF---EEKTVK 685 (803)
Q Consensus 609 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~v~ 685 (803)
|.+...+ ....+.
T Consensus 311 ----------------------------------------------------------------p~~~~~~~~~~~~~v~ 326 (524)
T 2ec8_A 311 ----------------------------------------------------------------GFINIFPMINTTVFVN 326 (524)
T ss_dssp ----------------------------------------------------------------CEEEEEESSCSEEEEC
T ss_pred ----------------------------------------------------------------CceEeecCCCceEEEc
Confidence 3333322 357889
Q ss_pred cCCeEEEEEEEeecCCCc-eEEeeCCeeccCCC-CeEEEeeC----ceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 686 EKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSP-KKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 686 ~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~-~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
+|+.+.|.|.+.|.|.|. +.|+++|.++.... ++....++ ...+|.|.++ +.+|+|.|+|.|.|..|..+.++
T Consensus 327 ~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~~~~~ 405 (524)
T 2ec8_A 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL-KGTEGGTYTFLVSNSDVNAAIAF 405 (524)
T ss_dssp TTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSC-CGGGCEEEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeec-CcccCeEEEEEEEecCceEEEEE
Confidence 999999999999999999 99999999987765 33333333 3578999999 79999999999999999999999
Q ss_pred EEEEEeeccCCCCCcccCCccceeeeeeeeEE
Q psy2776 760 RVTVDVEKVGRPSINSIDIDLNHVHYLAQSTE 791 (803)
Q Consensus 760 ~l~V~~~~~~pp~~~~~~~~~~~~~~~~~~~~ 791 (803)
.|.|..+|........... +|+|.+.|.|
T Consensus 406 ~l~V~~~P~i~~~~~~~~g---~l~C~~~g~P 434 (524)
T 2ec8_A 406 NVYVNTKPEILTYDRLVNG---MLQCVAAGFP 434 (524)
T ss_dssp EEEECEEEEEEEEECCSSS---CEEEEEEEES
T ss_pred EEEEecCCeEeecccCcCc---EEEEEEEeec
Confidence 9998754332110001111 6777777766
No 18
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=5e-43 Score=419.30 Aligned_cols=512 Identities=16% Similarity=0.196 Sum_probs=115.0
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCC--ceeEEE--eeeeeeEEEEeccccCCeEEEEEEEEccCccCC
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDE--FMVWNK--IETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGP 126 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~ 126 (803)
......|..++|.|... ..+ .|......... ...... .+.....|.|.+++..|+|.|+|.+....
T Consensus 40 ~~~v~~G~~vtL~C~~~-----~~v-~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~C~~~~~~---- 109 (772)
T 3v2a_R 40 ILTIKANTTLQITCRGQ-----RDL-DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD---- 109 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcCCCCEEEEEecc-----CCe-eeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHhhCEeEEEEEcCCC----
Confidence 44556799999999843 122 22222111000 000000 11224689999999999999999987211
Q ss_pred CcceeeEEEEcCCCCCCCCeeeccCcCeeeecC--CcEEEEEEECccCCCeeEEEEc--Ceecc-ce-eEEEecCeeEEE
Q psy2776 127 ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQ--SSVTLECVVSGVPTPDIKWYKD--DSLIK-GR-NITYENNVARFT 200 (803)
Q Consensus 127 ~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G--~~~~L~C~~~g~p~p~i~W~~~--~~~~~-~~-~~~~~~~~~~L~ 200 (803)
.+.. ..+.+..+.....+.+...+....+.+| +.++|.|.+.+ |.+.+.|+++ +..+. .. ...+ .....|.
T Consensus 110 ~~~~-~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~-~~~~~l~ 186 (772)
T 3v2a_R 110 LASV-IYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW-DSKKGFT 186 (772)
T ss_dssp -----------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEE-ETTTEEE
T ss_pred EEEE-EEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeec-CCCCCeE
Confidence 1111 1222222211111221233455778889 89999999986 7789999997 55443 22 2233 3346799
Q ss_pred EecCCCCcceEEEEEEEcCCcCeeeE-EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 201 VVNCSESSEGRYTCKATNEAGTAETS-CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~g~~~~s-~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
|.+++.+|+|.|+|.+.+........ ..+.+...+
T Consensus 187 i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~-------------------------------------------- 222 (772)
T 3v2a_R 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR-------------------------------------------- 222 (772)
T ss_dssp EEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCC--------------------------------------------
T ss_pred ecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCc--------------------------------------------
Confidence 99999999999999999764432222 222222110
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c--CCceeeEEeecCeeccccceeEEEE
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S--SPDIQVKWLKKGKEIKESARHIITS 356 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~--~p~~~i~W~~~g~~l~~~~~~~~~~ 356 (803)
.+.+....+....+.+|+.+.|.|.+ + .|.+.+.|++++..+..........
T Consensus 223 -------------------------~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 277 (772)
T 3v2a_R 223 -------------------------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277 (772)
T ss_dssp -------------------------EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC
T ss_pred -------------------------cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccc
Confidence 00111111222356679999999999 5 5678999999987765432211100
Q ss_pred cCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce
Q psy2776 357 RGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG 436 (803)
Q Consensus 357 ~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 436 (803)
... ...........|.|.+++.+|+|
T Consensus 278 ~~~------------------------------------------------------~~~~~~~~~~~L~i~~v~~~d~G 303 (772)
T 3v2a_R 278 KTQ------------------------------------------------------SGSEMKKFLSTLTIDGVTRSDQG 303 (772)
T ss_dssp -----------------------------------------------------------CCCEEEEEEEEESSCCSTTCS
T ss_pred ccc------------------------------------------------------ccccceEEEEEEEECcCCcCCCe
Confidence 000 00001122346999999999999
Q ss_pred eEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeecccc
Q psy2776 437 RYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLK 516 (803)
Q Consensus 437 ~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~ 516 (803)
.|+|.+.|..+.... .+.|.|..+|.+..... ...
T Consensus 304 ~Y~C~~~~~~~~~~~------------------------------------------~~~l~V~~~p~~~~~~~---~~~ 338 (772)
T 3v2a_R 304 LYTCAASSGLMTKKN------------------------------------------STFVRVHEKPFVAFGSG---MES 338 (772)
T ss_dssp EEEEEEECSSCEEEE------------------------------------------EEEEEEECCCC------------
T ss_pred EEEEEEEcCCcceeE------------------------------------------EEEEEEeCCCeeEeccC---CCC
Confidence 999999998876554 44555555554322111 112
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+...... . ....|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 339 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~--~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~ 413 (772)
T 3v2a_R 339 LVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI--K---AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVV 413 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceE--c---cceeEEEecCChhcCceEEEEEEECCcCeEEEEEE
Confidence 456788999999999999999999999999988763221 1 35789999999999999999999998865 4566
Q ss_pred EEEEeeeE-------------------------eEeeecc-cccEEEeeee-----------------------------
Q psy2776 595 SLQVLGYI-------------------------IQQQEKN-SLKFTKVATL----------------------------- 619 (803)
Q Consensus 595 ~l~V~~~p-------------------------~~~~~~~-~~~w~~~~~~----------------------------- 619 (803)
.|.|..+| +...+.. .+.|.+....
T Consensus 414 ~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (772)
T 3v2a_R 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG 493 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccC
Confidence 67776665 1112233 3889885210
Q ss_pred --------------C---CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecccee
Q psy2776 620 --------------D---PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEK 682 (803)
Q Consensus 620 --------------~---~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 682 (803)
. .....+.+.++ .+.|.|+|.|.|..|....+....+.. +|.+...+. .
T Consensus 494 g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~-----------~p~i~~~p~-~ 559 (772)
T 3v2a_R 494 GNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR-----------GPEITLQPD-M 559 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC-----------CceeeccCC-c
Confidence 0 01134555554 678999999999999775443333321 444443332 4
Q ss_pred EEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEE--------------------EeeCceEEEEEecCCCCCCce
Q psy2776 683 TVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKRE--------------------IFDGENIILELKEADSETDAG 742 (803)
Q Consensus 683 ~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~--------------------~~~~~~~~L~i~~v~~~~D~G 742 (803)
.+.+|+.+.|.|.+.|.|.+.+.|+|+|..+........ ........|.|.++ +.+|+|
T Consensus 560 ~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G 638 (772)
T 3v2a_R 560 QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNA-SLQDQG 638 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCC-CccCCc
Confidence 577899999999999999999999999877654322111 11122456999999 799999
Q ss_pred eEEEEEEccCcceee--eEEEEE
Q psy2776 743 DYKVVATNELGSATH--GARVTV 763 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~--~~~l~V 763 (803)
.|+|.|.|..|.... .+.|.|
T Consensus 639 ~Y~C~a~n~~~~~~~s~~~~l~v 661 (772)
T 3v2a_R 639 DYVCLAQDRKTKKRHCVVRQLTV 661 (772)
T ss_dssp -----------------------
T ss_pred EEEEEEEeCCCCeEEEEEEeecc
Confidence 999999997766543 344444
No 19
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=370.55 Aligned_cols=412 Identities=16% Similarity=0.178 Sum_probs=265.1
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCC-CcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCC--
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGP-ASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-- 174 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~-~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-- 174 (803)
...|.|.+++.+|+|.|+|.+.+..|... .+.. ..+.+... ...+|.+...+....+.+|+.+.|.|.+.|.|++
T Consensus 69 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~-~~l~V~~~-~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~ 146 (523)
T 2rcj_C 69 SASLAISGLEAEDESDYYCASWNSSDNSYVFGTG-TKVTVLGQ-PKANPTVTLFPPSSEELQANKATLVCLISDFYPGAV 146 (523)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCccccccCc-eEEEeccC-CCcCCeEEecCCcccccCCCceEEEEEeccccCCce
Confidence 46899999999999999999999776321 1122 22333211 1356777666666677789999999999987764
Q ss_pred eeEEEEcCeeccceeEEE-----ecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEE
Q psy2776 175 DIKWYKDDSLIKGRNITY-----ENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIIT 245 (803)
Q Consensus 175 ~i~W~~~~~~~~~~~~~~-----~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~ 245 (803)
.+.|+|++..+....... .++ ...|.|.++..+|+|.|+|.|.|..+....++.+.+....
T Consensus 147 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~---------- 216 (523)
T 2rcj_C 147 TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSAS---------- 216 (523)
T ss_pred EEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCC----------
Confidence 899999998876432111 111 2469999999999999999999998866555443221110
Q ss_pred eecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecccccee
Q psy2776 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDAT 325 (803)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (803)
...+.+....+. ..+.+|+.+.
T Consensus 217 ---------------------------------------------------------~~~P~v~~~~~~-~~~~~G~~~~ 238 (523)
T 2rcj_C 217 ---------------------------------------------------------TKGPSVFPLAPS-SKSTSGGTAA 238 (523)
T ss_pred ---------------------------------------------------------CcCCEEEecCCC-cccccCCceE
Confidence 000011111111 2235699999
Q ss_pred EEEEe-cC-Cce-eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeee
Q psy2776 326 FQVEL-SS-PDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFE 402 (803)
Q Consensus 326 l~C~~-~~-p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~ 402 (803)
|.|.+ +. |.+ ++.|+|+|..+.......+. ...|.|.
T Consensus 239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~---------------~~~g~~~------------------------- 278 (523)
T 2rcj_C 239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVL---------------QSSGLYS------------------------- 278 (523)
T ss_pred EEEEEeceeCCCeEEEEecCCcccceEeCCcEe---------------cCCCcEE-------------------------
Confidence 99999 64 766 89999998775421110000 0111111
Q ss_pred eeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhc
Q psy2776 403 SKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQ 482 (803)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 482 (803)
....|.|.++..+| |.|+|.|.|..|.....
T Consensus 279 ------------------~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~------------------------------ 309 (523)
T 2rcj_C 279 ------------------LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD------------------------------ 309 (523)
T ss_pred ------------------EEEEEEechhhcCC-ceEEEEEEeCCCCcceE------------------------------
Confidence 12359999999999 99999999998875542
Q ss_pred ccccccccccceeeeccCCCCCCccceeeeccccce-EEeecceeEEEEEEcCcCC----CeeEEeeCCeeecCCCcEEE
Q psy2776 483 KLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ-RLSVKSQWKVEVKYFGFPR----PEISWMKNGAEITDSKACRI 557 (803)
Q Consensus 483 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~-~v~~g~~v~l~C~~~g~p~----~~v~W~~~g~~i~~~~~~~~ 557 (803)
..|.+...|.. .+ ..+... .+.+|+.+.|.|.+.|.|+ +.++|+|+|..+........
T Consensus 310 ------------~~l~v~~~P~~---~~--~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~ 372 (523)
T 2rcj_C 310 ------------KRVEPLSLPSV---FL--FPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR 372 (523)
T ss_pred ------------EecCCCcCceE---Ee--cCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCc
Confidence 22223222221 11 111112 3678999999999998754 48999999998876543221
Q ss_pred EecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccc
Q psy2776 558 FIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLR 632 (803)
Q Consensus 558 ~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 632 (803)
....+ .+.|.|.++..+|+|.|+|.|.|..+.......|.+..
T Consensus 373 ~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~-------------------------------- 420 (523)
T 2rcj_C 373 EQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK-------------------------------- 420 (523)
T ss_pred eecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc--------------------------------
Confidence 11111 25699999999999999999999887765554444210
Q ss_pred cCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecCCC--ceEEeeC
Q psy2776 633 DKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAP--SIVWFRN 709 (803)
Q Consensus 633 ~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~--~v~W~~~ 709 (803)
....+|.+...+.. ..+. |+.++|.|.+.|.|++ .|.|++|
T Consensus 421 -----------------------------------~~~~~P~v~~~~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~ 464 (523)
T 2rcj_C 421 -----------------------------------GQPREPQVYTLPPSREEMT-KNQVSLTCLVKGFYPSDIAVEWESN 464 (523)
T ss_pred -----------------------------------CCCCCCEEEEeCCChHHcc-CCceEEEEEEEeeECCCCEEEEEEC
Confidence 00114555443333 2333 4449999999998766 8999999
Q ss_pred CeeccCCCCeEE--EeeCce---EEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 710 NKPLLSSPKKRE--IFDGEN---IILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 710 ~~~l~~~~~~~~--~~~~~~---~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
|.++........ ..++.. ..|.|... ..+|+|.|+|.|.|....
T Consensus 465 g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~-~~~~~g~Y~C~a~n~~l~ 513 (523)
T 2rcj_C 465 GQPENNYKTTPPVLDSDGSFFLYSKLTVDKS-RWQQGNVFSCSVMHEALH 513 (523)
T ss_pred CEECCCeeeccceeCCCCCEEEEEEEEEChH-HccCCCeEEEEEEcCCcC
Confidence 999875433222 223332 23555554 347899999999997654
No 20
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=5.3e-41 Score=366.63 Aligned_cols=367 Identities=20% Similarity=0.296 Sum_probs=271.2
Q ss_pred CCCeeeccCcCeee---ecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCCC-CcceEEEEE
Q psy2776 143 EAPVIQEPLKDSVA---GFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCSE-SSEGRYTCK 215 (803)
Q Consensus 143 ~~p~i~~~~~~~~v---~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~ 215 (803)
.+|.|...|.+..+ .+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++...+ ..|.|.++.. +|+|.|+|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~--~~L~i~~~~~~~D~G~Y~C~ 80 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQCV 80 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeC--CeEEEecccccccCEEEEEE
Confidence 46778887777766 6899999999999999999999999998763 3344433 4799999997 999999999
Q ss_pred EEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 216 ATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 216 a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
|.|..|.... .+.|.|...+.
T Consensus 81 a~n~~g~~~s~~~~l~v~~~~~---------------------------------------------------------- 102 (382)
T 1cs6_A 81 ATNARGTVVSREASLRFGFLQE---------------------------------------------------------- 102 (382)
T ss_dssp EEETTEEEECCCEEEEEEEECC----------------------------------------------------------
T ss_pred EEcCCcEEEecceEEEeecccc----------------------------------------------------------
Confidence 9999886533 46666654421
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccc--cceeEEEEcCceeEEEEeecCC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKE--SARHIITSRGTQRKLVIKRVTQ 370 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~--~~~~~~~~~~~~~~l~i~~~~~ 370 (803)
+....+....+.+|+.+.|.|.+ +.|.+.+.|++++.++.. +.+..+
T Consensus 103 -------------~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~---------------- 153 (382)
T 1cs6_A 103 -------------FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV---------------- 153 (382)
T ss_dssp -------------CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE----------------
T ss_pred -------------ccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE----------------
Confidence 11111233456679999999996 578899999999876532 111111
Q ss_pred CCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeee
Q psy2776 371 DDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450 (803)
Q Consensus 371 ~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~ 450 (803)
......|.|.+++.+|+|.|+|.+.|..|...
T Consensus 154 ------------------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 185 (382)
T 1cs6_A 154 ------------------------------------------------SQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 185 (382)
T ss_dssp ------------------------------------------------CTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred ------------------------------------------------ecCceEEEEEeeCcccCeeEEEEEEEcccccc
Confidence 01122488888899999999999998774333
Q ss_pred eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEE
Q psy2776 451 TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEV 530 (803)
Q Consensus 451 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C 530 (803)
.... .. .+.+.+... +.+..+|. +.........+.+|+.+.|.|
T Consensus 186 ~~~~--s~--~~~l~v~~~---------------------------~~~~~~P~-----~~~~~~~~~~~~~G~~v~l~C 229 (382)
T 1cs6_A 186 KSVF--SK--FSQLSLAAE---------------------------DARQYAPS-----IKAKFPADTYALTGQMVTLEC 229 (382)
T ss_dssp EEEE--CC--CEEEEEESC---------------------------CCCCEEEE-----EEECCCSEEEEETTCCEEEEC
T ss_pred ceeE--cc--ceeeccchh---------------------------hcccCCCc-----eeccCCCceEEeCCCeEEEEE
Confidence 2110 00 001111000 00111121 111112356788999999999
Q ss_pred EEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeeccc
Q psy2776 531 KYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNS 610 (803)
Q Consensus 531 ~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~ 610 (803)
.+.|.|.+.+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 230 ~~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------- 293 (382)
T 1cs6_A 230 FAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA---------- 293 (382)
T ss_dssp EEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----------
T ss_pred EEccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec----------
Confidence 9999999999999998776541 123456899999999999999999999999998888998876
Q ss_pred ccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeE
Q psy2776 611 LKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI 690 (803)
Q Consensus 611 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v 690 (803)
+|.+...+....+.+|+.+
T Consensus 294 -------------------------------------------------------------~p~~~~~~~~~~~~~g~~~ 312 (382)
T 1cs6_A 294 -------------------------------------------------------------QPDWLDVITDTEADIGSDL 312 (382)
T ss_dssp -------------------------------------------------------------EEEEEECCCCEEEETTCCE
T ss_pred -------------------------------------------------------------CCCcccCCCccEEcCCCeE
Confidence 4455566667788999999
Q ss_pred EEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 691 RLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 691 ~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+.|.|.|.+.|+++|.++..+.++.+. +. .|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 313 ~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~--~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 313 RWSCVASGKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKL-VLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EEECEEEEESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeeeecCCEEEEEECCEECCCCceEEEE--CC--EEEECcC-CcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99999999999999999999999888776543 33 6999999 7999999999999999999999999884
No 21
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1.8e-40 Score=363.22 Aligned_cols=358 Identities=17% Similarity=0.251 Sum_probs=257.2
Q ss_pred CCeeeccCcC-eeeecCCcEEEEEEECccCCCeeEEEE-cCeeccce-eEEEecCeeEEEEecCCCCc------ceEEEE
Q psy2776 144 APVIQEPLKD-SVAGFQSSVTLECVVSGVPTPDIKWYK-DDSLIKGR-NITYENNVARFTVVNCSESS------EGRYTC 214 (803)
Q Consensus 144 ~p~i~~~~~~-~~v~~G~~~~L~C~~~g~p~p~i~W~~-~~~~~~~~-~~~~~~~~~~L~i~~v~~~d------~G~Y~C 214 (803)
+|.|...+.+ +.+.+|+.+.|.|.+.|.|.|++.|+| ++..+... .........+|.|.+++.+| +|.|+|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C 82 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 82 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEE
Confidence 5667766665 557899999999999999999999999 77766532 11122234579999999997 999999
Q ss_pred EEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 215 KATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 215 ~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
.|.|..|... ..+.|.+...+.
T Consensus 83 ~a~n~~g~~~s~~~~v~v~~~p~--------------------------------------------------------- 105 (388)
T 2v5m_A 83 LARNQFGSIISRDVHVRAVVAQY--------------------------------------------------------- 105 (388)
T ss_dssp EEEETTEEEECCCEEEEEECCCC---------------------------------------------------------
T ss_pred EEEccCCeEEecceEEEEccccc---------------------------------------------------------
Confidence 9999988642 345555544321
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC---ceeeEEeecCeeccccc-----eeEEEEcCceeEEE
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP---DIQVKWLKKGKEIKESA-----RHIITSRGTQRKLV 364 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p---~~~i~W~~~g~~l~~~~-----~~~~~~~~~~~~l~ 364 (803)
+.. .+....+.+|+.+.|.|.+ +.+ .+.+.|++++..+.... +..+.
T Consensus 106 --------------~~~-~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--------- 161 (388)
T 2v5m_A 106 --------------YEA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL--------- 161 (388)
T ss_dssp --------------CCC-BCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC---------
T ss_pred --------------ccc-CccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc---------
Confidence 111 1223345679999999999 543 48999999987653211 11111
Q ss_pred EeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCc-eeEEEEee
Q psy2776 365 IKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSE-GRYTCKAT 443 (803)
Q Consensus 365 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~ 443 (803)
....|.|.+++.+|. |.|+|.+.
T Consensus 162 --------------------------------------------------------~~~~L~i~~v~~~d~~G~Y~C~~~ 185 (388)
T 2v5m_A 162 --------------------------------------------------------PSGELHIREVGPEDGYKSYQCRTK 185 (388)
T ss_dssp --------------------------------------------------------TTSCEEESSCCGGGGGCCEEEEEE
T ss_pred --------------------------------------------------------cCCcEEEecCCccccCeeEEEEec
Confidence 112488899999999 99999999
Q ss_pred CCceeeee-ecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEee
Q psy2776 444 NEAGTAET-RTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSV 522 (803)
Q Consensus 444 ~~~g~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~ 522 (803)
|..+.... +.. ...|.|..++................+.+
T Consensus 186 n~~~~~~~~~~~---------------------------------------~~~l~v~~~~~~~~p~~~~~~~~~~~v~~ 226 (388)
T 2v5m_A 186 HRLTGETRLSAT---------------------------------------KGRLVITEPISSSAPRTPALVQKPLELMV 226 (388)
T ss_dssp ETTTCCEEECSS---------------------------------------CBCEEEECCCSCEEEECCSSCCCCEEEET
T ss_pred cCCCCceeeccc---------------------------------------cceEEEecCCcCCCCcCccccCCceEEee
Confidence 87543322 110 11222322211100000000112356788
Q ss_pred cceeEEEEEEcCcCCCeeEEeeCCeeec------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 523 KSQWKVEVKYFGFPRPEISWMKNGAEIT------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 523 g~~v~l~C~~~g~p~~~v~W~~~g~~i~------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
|+.+.|.|.+.|.|.+.+.|+|++..+. ...+... ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 227 G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 302 (388)
T 2v5m_A 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302 (388)
T ss_dssp TSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE----ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred CCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec----ccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence 9999999999999999999999854332 2222221 13589999999999999999999999999999999
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|..+| .+.
T Consensus 303 ~V~~~p-----------------------------------------------------------------------~~~ 311 (388)
T 2v5m_A 303 TVTAPL-----------------------------------------------------------------------SAK 311 (388)
T ss_dssp EEEEEE-----------------------------------------------------------------------EEE
T ss_pred EEeCCC-----------------------------------------------------------------------ccc
Confidence 987743 344
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+. ..|.|.++ +.+|+|.|+|.|.|.+|..+
T Consensus 312 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~----------~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~ 380 (388)
T 2v5m_A 312 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESV-KKEDKGMYQCFVRNDRESAE 380 (388)
T ss_dssp EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS----------SEEEESSC-CGGGCEEEEEEEECSSCEEE
T ss_pred cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC----------CEEEEecC-ChhhCEEEEEEEEcCCCcEE
Confidence 45556788999999999999999999999999999986532 36999999 78999999999999999999
Q ss_pred eeEEEEE
Q psy2776 757 HGARVTV 763 (803)
Q Consensus 757 ~~~~l~V 763 (803)
.++.|.|
T Consensus 381 ~~~~l~V 387 (388)
T 2v5m_A 381 ASAELKL 387 (388)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999887
No 22
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=372.97 Aligned_cols=368 Identities=15% Similarity=0.163 Sum_probs=254.8
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-eEEEec-CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEE
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NITYEN-NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLL 230 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~ 230 (803)
...+.+|++++|+|.+.+.|...+.|++++..+... .+..++ ...+|.|.+++.+|+|.|+|.|.|..+.....+.|.
T Consensus 57 ~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~ 136 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136 (527)
T ss_dssp EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEE
T ss_pred eEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEE
Confidence 688999999999999998888899999999876532 222222 335699999999999999999999888766666665
Q ss_pred EeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccc
Q psy2776 231 VQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLS 310 (803)
Q Consensus 231 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (803)
|...+....
T Consensus 137 v~~~~~~~~----------------------------------------------------------------------- 145 (527)
T 3qs9_E 137 IRNTLLYTL----------------------------------------------------------------------- 145 (527)
T ss_dssp EC-----CE-----------------------------------------------------------------------
T ss_pred ECCceeecc-----------------------------------------------------------------------
Confidence 542110000
Q ss_pred cCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 311 KLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
........++.+.|.|.+ |.|.|.+.|++++.++..... ...
T Consensus 146 --~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~---~~~-------------------------------- 188 (527)
T 3qs9_E 146 --RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE---ESP-------------------------------- 188 (527)
T ss_dssp --EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-----------------------------------------------
T ss_pred --CCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccc---cCC--------------------------------
Confidence 000112336678899999 999999999998765431100 000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
.........+..+|+|.|+|.|.|..|.....
T Consensus 189 -------------------------------~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~----------------- 220 (527)
T 3qs9_E 189 -------------------------------AVVKKEEKVLHELFGTDIRCCARNELGRECTR----------------- 220 (527)
T ss_dssp --------------------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEE-----------------
T ss_pred -------------------------------cEEEEeeeeccccCCEEEEEEEEeCCCcccce-----------------
Confidence 00011122245789999999999998887662
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCee
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAE 548 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.++. ....+.+|+.+.|.|.+. |.|.+.++|+++|..
T Consensus 221 ------------------------~~~l~V~~~p~~~p--------~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~ 268 (527)
T 3qs9_E 221 ------------------------LFTIDLNQTPQTTL--------PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268 (527)
T ss_dssp ------------------------CEEEESSSCCCCSC--------CEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC
T ss_pred ------------------------EEEEEEeccCccCC--------CceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE
Confidence 35666666665422 256788999999999996 999999999999998
Q ss_pred ecCCCcEEEEe--c----CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCc
Q psy2776 549 ITDSKACRIFI--D----EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPS 622 (803)
Q Consensus 549 i~~~~~~~~~~--~----~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~ 622 (803)
+.....+.... . ....+|.|.++..+|+|.|+|.|.|. .+.++.|.|..+|
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p-------------------- 325 (527)
T 3qs9_E 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG-------------------- 325 (527)
T ss_dssp CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C--------------------
T ss_pred CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC--------------------
Confidence 87654332211 1 12357999999999999999999998 6777888886633
Q ss_pred cceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEec--cceeEEecCCeEEEEEEEeecC
Q psy2776 623 TLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER--FEEKTVKEKGTIRLMAKVKASP 700 (803)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p 700 (803)
.+... .....+.+|+.+.|.|.+.|.|
T Consensus 326 ---------------------------------------------------~i~~~~~~~~~~v~~G~~v~L~C~~~g~P 354 (527)
T 3qs9_E 326 ---------------------------------------------------FINATNSSEDYEIDQYEEFCFSVRFKAYP 354 (527)
T ss_dssp ---------------------------------------------------EEECCCSCCEECCCTTCCCCEEEEEEEES
T ss_pred ---------------------------------------------------ccccccCcccEEEcCCCeEEEEEEEEecC
Confidence 22111 1235678899999999999999
Q ss_pred CCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCCCcccCCcc
Q psy2776 701 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSINSIDIDL 780 (803)
Q Consensus 701 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~~~~~~~ 780 (803)
.|.+.|+|+|.+|..+.++. .....|.|.++ +.+|+|.|+|.|.|..|..+..+.|.|. .||.+..... .
T Consensus 355 ~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v-~~~D~G~YtC~A~N~~g~~~~~~~L~V~----~~P~i~~~~~-~ 424 (527)
T 3qs9_E 355 QIRCTWTFSRKSFPCEQKGL----DNGYSISKFCN-HKHQPGEYIFHAENDDAQFTKMFTLNIR----RKPQVLAEAS-A 424 (527)
T ss_dssp CCEEEEEETTEEEECBCCBC----SSSSEEEEECC-CTTCCSCEEEEEEETTEEEEEEEEEC------CCCEEEECCC-C
T ss_pred CCEEEEEECCEECcCCcccc----cCCcEEEEecC-CcccCEEEEEEEEeCCCcEEEEEEEEEe----cCCeEEEeCC-C
Confidence 99999999999997665532 13346999999 7999999999999999999998888885 4565543322 2
Q ss_pred ceeeeeeeeEEE
Q psy2776 781 NHVHYLAQSTEV 792 (803)
Q Consensus 781 ~~~~~~~~~~~~ 792 (803)
.+|+|.+.|.|-
T Consensus 425 ~~l~C~a~g~P~ 436 (527)
T 3qs9_E 425 SQASCFSDGYPL 436 (527)
T ss_dssp E---EEEECSSC
T ss_pred CEEEEEEEEEcC
Confidence 357888887764
No 23
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=353.75 Aligned_cols=372 Identities=14% Similarity=0.203 Sum_probs=243.9
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc-------------ceeEEE--ecCeeEEEEecCCCCcceEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK-------------GRNITY--ENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~-------------~~~~~~--~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+..+.+.+|+.+.|.|.+.+.|.+.+.|+|++. .+. ..++.. .+....|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (523)
T 2rcj_C 7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY 86 (523)
T ss_pred CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence 456788899999999999998999999999752 111 122222 234568999999999999999
Q ss_pred EEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 214 CKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 214 C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
|.|.|..|.. ...+.|.|...+..
T Consensus 87 C~a~n~~g~~~~~~~~~~l~V~~~~~~----------------------------------------------------- 113 (523)
T 2rcj_C 87 CASWNSSDNSYVFGTGTKVTVLGQPKA----------------------------------------------------- 113 (523)
T ss_pred EEEccCCCccccccCceEEEeccCCCc-----------------------------------------------------
Confidence 9999987642 23455666432100
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc--eeeEEeecCeeccccceeEEEEcCceeEEEEee
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD--IQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 367 (803)
+ +.+... +......+|+.+.|.|.+ +.|+ +.+.|+|+|.++..+......
T Consensus 114 ------------~--P~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~------------ 166 (523)
T 2rcj_C 114 ------------N--PTVTLF-PPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKP------------ 166 (523)
T ss_pred ------------C--CeEEec-CCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccc------------
Confidence 0 001111 111223458899999999 6554 499999999988754321100
Q ss_pred cCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCce
Q psy2776 368 VTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447 (803)
Q Consensus 368 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g 447 (803)
.....|.|.+ ...|.|.++..+|+|.|+|.|.|..+
T Consensus 167 -~~~~~~~~~~-------------------------------------------~s~L~i~~~~~~d~G~Y~C~a~n~~~ 202 (523)
T 2rcj_C 167 -SKQSNNKYAA-------------------------------------------SSYLSLTPEQWKSHRSYSCQVTHEGS 202 (523)
T ss_pred -cccCCCCEEE-------------------------------------------EEEEEEechhcCCCceEEEEEEecCc
Confidence 0111122221 13489999999999999999999877
Q ss_pred eeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeE
Q psy2776 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWK 527 (803)
Q Consensus 448 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~ 527 (803)
....... + . ....+..+|. +.... ....+.+|+.+.
T Consensus 203 ~~~~~~~---------~--~---------------------------~~~~~~~~P~---v~~~~---~~~~~~~G~~~~ 238 (523)
T 2rcj_C 203 TVEKTVA---------P--T---------------------------ECSASTKGPS---VFPLA---PSSKSTSGGTAA 238 (523)
T ss_pred cccccee---------e--e---------------------------ecCCCCcCCE---EEecC---CCcccccCCceE
Confidence 6544210 0 0 0001112221 11111 123457899999
Q ss_pred EEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 528 VEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 528 l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
|.|.+.|. |.| .++|+|+|..+.......+....+ .+.|.|.++..+| |.|+|.|.|..|.......|.|...
T Consensus 239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~ 317 (523)
T 2rcj_C 239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL 317 (523)
T ss_pred EEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence 99999987 777 899999998754321111111111 3589999999999 9999999999998776666655331
Q ss_pred EeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce
Q psy2776 602 IIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE 681 (803)
Q Consensus 602 p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 681 (803)
|+.++..+..
T Consensus 318 ----------------------------------------------------------------------P~~~~~~p~~ 327 (523)
T 2rcj_C 318 ----------------------------------------------------------------------PSVFLFPPKP 327 (523)
T ss_pred ----------------------------------------------------------------------ceEEecCCCc
Confidence 1222333333
Q ss_pred eE-EecCCeEEEEEEEeecCC----CceEEeeCCeeccCCCCeEEEe--eCc---eEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 682 KT-VKEKGTIRLMAKVKASPA----PSIVWFRNNKPLLSSPKKREIF--DGE---NIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 682 ~~-v~~g~~v~L~C~~~g~p~----~~v~W~~~~~~l~~~~~~~~~~--~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.. +.+|+.+.|.|.+.|.|+ +.|.|+|+|.++.......... ++. ...|.|.++ ..+|+|.|+|.|.|.
T Consensus 328 ~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~-~~~d~G~Y~C~a~n~ 406 (523)
T 2rcj_C 328 KDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQ-NWLDGKEYKCKVSNK 406 (523)
T ss_pred hhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHH-HhcCCCeEEEEEeCC
Confidence 33 788999999999999754 4899999999987654322111 121 246889888 689999999999999
Q ss_pred CcceeeeEEEE
Q psy2776 752 LGSATHGARVT 762 (803)
Q Consensus 752 ~G~~~~~~~l~ 762 (803)
.|.......|.
T Consensus 407 ~~~~~~~~~~~ 417 (523)
T 2rcj_C 407 ALPAPIEKTIS 417 (523)
T ss_pred CCCCceeEEEE
Confidence 88876655554
No 24
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=8.5e-37 Score=353.10 Aligned_cols=410 Identities=13% Similarity=0.151 Sum_probs=271.9
Q ss_pred CceEEEEEeeccCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCce-EEEecCCeEEEEeeCCCCCCCCCeEEEEEEe
Q psy2776 4 DSATLTIVKFEDKDLGDYTISLSNALGQASATTKVTLLSAPGAPDTPE-IVGRSDSSVTLHWRPPQDDGHSPVTGYVLES 82 (803)
Q Consensus 4 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~~~-~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~ 82 (803)
+..+|+|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.....+. .....|..++|.|........ +...|....
T Consensus 73 g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-~~v~W~k~~ 151 (585)
T 2ocw_A 73 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQ-KRKSLYKQI 151 (585)
T ss_pred CEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCC-ccEEEEECC
Confidence 346899999999999999999999999888899999999887655443 445679999999987433221 222222211
Q ss_pred ecC---------------CCceeEEEeee--eeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCC
Q psy2776 83 HDK---------------DEFMVWNKIET--TSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAP 145 (803)
Q Consensus 83 ~~~---------------~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p 145 (803)
... ...+.....+. ....|.|.+++.+|+|.|+|.+.|..|... .... +.+.. .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~~-l~V~~----~~- 223 (585)
T 2ocw_A 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNK--KNAD-LQVLK----PE- 223 (585)
T ss_pred CCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcccc--ceEE-EEEcc----CC-
Confidence 110 00001111010 123799999999999999999998877532 2222 22221 11
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCC---CeeEEE-EcCee----cc---------ceeEEEe----cCeeEEEEecC
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWY-KDDSL----IK---------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~-~~~~~----~~---------~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|+.+.|.|.+. .|. +.+.|+ +++.. +. ..++... ++...|.|.++
T Consensus 224 -----p~~~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v 297 (585)
T 2ocw_A 224 -----PELVYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGL 297 (585)
T ss_pred -----CceeEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccC
Confidence 2335577999999999974 444 678897 77731 11 1222222 23348999999
Q ss_pred CCCcceEEEEEEEcCCcCee-----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 205 SESSEGRYTCKATNEAGTAE-----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
+.+|+|.|+|.|.|. |... .++.|.|...+..
T Consensus 298 ~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~------------------------------------------ 334 (585)
T 2ocw_A 298 RKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTI------------------------------------------ 334 (585)
T ss_pred ChhhCEEEEEEEEcC-CCccccCceeeEEEEEeccccc------------------------------------------
Confidence 999999999999995 4443 5667777655310
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceee----EEee--cCe--eccccc
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQV----KWLK--KGK--EIKESA 350 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i----~W~~--~g~--~l~~~~ 350 (803)
...+....+.+|+.+.|.|.+ +.|.+.+ .|++ +|. .+....
T Consensus 335 ------------------------------~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~ 384 (585)
T 2ocw_A 335 ------------------------------PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSE 384 (585)
T ss_pred ------------------------------ccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeec
Confidence 111333445679999999999 8888876 7999 876 554321
Q ss_pred eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEec
Q psy2776 351 RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNC 430 (803)
Q Consensus 351 ~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 430 (803)
......... ++.+.. ...++..+|+|.++
T Consensus 385 ~~~~~~~~~--r~~~~~-------------------------------------------------~~~~g~~~L~I~~v 413 (585)
T 2ocw_A 385 GWVKAQYEG--RLSLLE-------------------------------------------------EPGNGTFTVILNQL 413 (585)
T ss_pred ceeecccCC--CEEEec-------------------------------------------------cCCCcEEEEEECCC
Confidence 111000000 000000 00234456999999
Q ss_pred cCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC-CCCccce
Q psy2776 431 SESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP-PQQPAIK 509 (803)
Q Consensus 431 ~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~-p~~~~~~ 509 (803)
+.+|+|.|+|.| |..|.... .+.|.|..+ |.+..
T Consensus 414 ~~~D~G~Y~C~a-n~~g~~~~------------------------------------------~~~l~V~~~~p~~~~-- 448 (585)
T 2ocw_A 414 TSRDAGFYWCLT-NGDTLWRT------------------------------------------TVEIKIIEGEPNLKV-- 448 (585)
T ss_pred ChhhCEEEEEcc-cCCCccce------------------------------------------eEEEEEecCcccccc--
Confidence 999999999999 77766544 344455442 22211
Q ss_pred eeeccccceEEeecceeEEEEEEc----CcCCCeeEEeeCCeeecCCCc------E-EEEecCCeEEEEEeeeccCcCeE
Q psy2776 510 LVDSNLKSQRLSVKSQWKVEVKYF----GFPRPEISWMKNGAEITDSKA------C-RIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 510 ~~~~~~~~~~v~~g~~v~l~C~~~----g~p~~~v~W~~~g~~i~~~~~------~-~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
+....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+..... + .+...+....|.|.++..+|+|.
T Consensus 449 -----~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 523 (585)
T 2ocw_A 449 -----PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523 (585)
T ss_pred -----CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeE
Confidence 2356789999999999997 678889999999988754321 1 11112334799999999999999
Q ss_pred EEEEEEcCCCCeE-EEEEEEEeeeE
Q psy2776 579 YTVTATNAAGSTS-LDLSLQVLGYI 602 (803)
Q Consensus 579 Y~C~a~n~~g~~s-~s~~l~V~~~p 602 (803)
|+|.|.|..|... ..+.|.|..+|
T Consensus 524 Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 524 YWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred EEEEeEeCCCccEEEEEEEEEEeee
Confidence 9999999998755 44899998876
No 25
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=1.3e-35 Score=309.66 Aligned_cols=274 Identities=25% Similarity=0.413 Sum_probs=228.5
Q ss_pred ccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 310 SKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
...|....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+....+.
T Consensus 9 ~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--------------------------------- 55 (284)
T 2rik_A 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT--------------------------------- 55 (284)
T ss_dssp EECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEE---------------------------------
T ss_pred EccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEE---------------------------------
Confidence 334555667789999999999 8899999999999888765443322
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
...+...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 56 -----------------------------~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~----------------- 89 (284)
T 2rik_A 56 -----------------------------LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC----------------- 89 (284)
T ss_dssp -----------------------------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE-----------------
T ss_pred -----------------------------EcCCEEEEEEecCCcccCEEEEEEEEECCceEEE-----------------
Confidence 2234456888999999999999999998887654
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.+.. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..
T Consensus 90 -------------------------~~~l~V~~~p~~~~-----~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~ 139 (284)
T 2rik_A 90 -------------------------SAQLGVQEPPRFIK-----KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139 (284)
T ss_dssp -------------------------EEEEEEECCCEEEE-----CCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEE
T ss_pred -------------------------EEEEEccCCCcccc-----cCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEE
Confidence 44555555554211 111245678999999999999999999999999999
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTV 628 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~ 628 (803)
+....++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 140 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------------------------- 191 (284)
T 2rik_A 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE---------------------------- 191 (284)
T ss_dssp CCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----------------------------
T ss_pred CcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec----------------------------
Confidence 9888887777777789999999999999999999999999999888888866
Q ss_pred cccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee
Q psy2776 629 ENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708 (803)
Q Consensus 629 ~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~ 708 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 192 -------------------------------------------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~ 228 (284)
T 2rik_A 192 -------------------------------------------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 228 (284)
T ss_dssp -------------------------------------------CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEE
T ss_pred -------------------------------------------CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEE
Confidence 4555555566778899999999999999999999999
Q ss_pred CCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 709 NNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 709 ~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|.+|..+..+.|.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 229 DKRELRSGKKYKIMSENFLTSIHILNV-DSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp TTEEECBTTTEEEEEETTEEEEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEECcCCCCEEEEEcCCEEEEEEcCC-CcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 999999998988888888889999999 7899999999999999999999998884
No 26
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=8.9e-37 Score=340.91 Aligned_cols=372 Identities=16% Similarity=0.170 Sum_probs=249.4
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCee-----EEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDI-----KWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i-----~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
...|.+..+.+|+.+.|.|.+.| |.|.+ .|+|++..+.. .....|.|.+++. |+| |+|.|.+..+.
T Consensus 3 ~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~------~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~ 73 (450)
T 1z7z_I 3 SVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG------NNRKVYELSNVQE-DSQ-PMCYSNCPDGQ 73 (450)
T ss_dssp EEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST------TTEEEEEEEEECS-CBC-CEEEEEETTEE
T ss_pred ccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC------CCceEEEEEeccc-CCe-eEEEEeCCCCc
Confidence 34567788899999999999999 88988 99998764432 2335799999987 999 99999877666
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
....+.|.|...|.
T Consensus 74 ~~~~~~l~V~~~P~------------------------------------------------------------------ 87 (450)
T 1z7z_I 74 STAKTFLTVYWTPE------------------------------------------------------------------ 87 (450)
T ss_dssp EEEECEEEEEBCCS------------------------------------------------------------------
T ss_pred ceeEEEEEEEeCCC------------------------------------------------------------------
Confidence 66777888775421
Q ss_pred CccccccccCCceeeeccccceeEEEEe-cCCce---eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI---QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~---~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
++...+....+.+|+.+.|.|.+ +.|.+ ++.|+|+|.++..+....
T Consensus 88 -----~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~------------------------- 137 (450)
T 1z7z_I 88 -----RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG------------------------- 137 (450)
T ss_dssp -----EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT-------------------------
T ss_pred -----cceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc-------------------------
Confidence 01111222345679999999999 77776 999999998876432100
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
......|.|.++..+|+|.|+|.|.|..|......
T Consensus 138 ----------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~----- 172 (450)
T 1z7z_I 138 ----------------------------------------EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL----- 172 (450)
T ss_dssp ----------------------------------------TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE-----
T ss_pred ----------------------------------------cccceEEEEEeeccccCceEEEEEEcccCCCCceE-----
Confidence 01123588899999999999999998876433210
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCc-C
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P 536 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p 536 (803)
...+. ....|.+...| ..|.+. ....+.+|+.+.|.|.+.|. |
T Consensus 173 ----~~~~s-------------------------~~~~l~v~~~~~~~p~~~------~~~~v~~G~~v~l~C~~~g~~P 217 (450)
T 1z7z_I 173 ----FENTS-------------------------APYQLQTFVLPATPPQLV------SPRVLEVDTQGTVVCSLDGLFP 217 (450)
T ss_dssp ----EEEEC-------------------------CCEECEECCCCSSCCEEE------CCSEEETTSEEEEEEEEESCTT
T ss_pred ----Eeecc-------------------------CccceeeeccCCCCCEec------CceeEEeCCcEEEEEEeeCCCC
Confidence 00000 12333444332 222111 12678899999999999998 7
Q ss_pred --CCeeEEeeCCeeecCCCcEEEEecCCeEEEE-EeeeccCcCe--EEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccc
Q psy2776 537 --RPEISWMKNGAEITDSKACRIFIDEETSTIA-IYSVVRADTS--TYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 537 --~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~-i~~v~~~dsG--~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
.+.+.|+++|..+.. + +....+...+. ..++..+|+| .|+|.|.|..|....++.|.|...+
T Consensus 218 ~~~~~~~W~~~~~~~~~--~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~--------- 284 (450)
T 1z7z_I 218 VSEAQVHLALGDQRLNP--T--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP--------- 284 (450)
T ss_dssp GGGCEEEEEETTEECCC--E--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCC---------
T ss_pred CCceEEEEeCCCEeCCc--e--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCC---------
Confidence 689999999998865 2 33333333322 2277999999 9999999999998888889887644
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
+|.+... ...+.+|+.++
T Consensus 285 ------------------------------------------------------------~p~i~~~--~~~v~~G~~v~ 302 (450)
T 1z7z_I 285 ------------------------------------------------------------APNVILT--KPEVSEGTEVT 302 (450)
T ss_dssp ------------------------------------------------------------CCEEEES--CSEEETTCEEE
T ss_pred ------------------------------------------------------------CCeEecC--CeeEeCCCcEE
Confidence 4555432 45789999999
Q ss_pred EEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc----ceeeeEEEEEEeec
Q psy2776 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG----SATHGARVTVDVEK 767 (803)
Q Consensus 692 L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G----~~~~~~~l~V~~~~ 767 (803)
|.|.+. |.|.+.| +|.++.. .+....|.|.++ ..+|+|.|+|.|.|..| ..+.++.|.|..++
T Consensus 303 l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P 369 (450)
T 1z7z_I 303 VKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKAT-PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 369 (450)
T ss_dssp EEEEC----------------------------CCCCCEEEECC-GGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEE
T ss_pred EEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecC-cccCCceEEEEEEcCCCCcccccceeEEEEEecCC
Confidence 999997 8999999 7777622 123347999999 78999999999998776 44577788886554
Q ss_pred cCCCC-----CcccCCccceeeeeeeeEEE
Q psy2776 768 VGRPS-----INSIDIDLNHVHYLAQSTEV 792 (803)
Q Consensus 768 ~~pp~-----~~~~~~~~~~~~~~~~~~~~ 792 (803)
..... +.....+..+|+|.+.|.|-
T Consensus 370 ~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~ 399 (450)
T 1z7z_I 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPL 399 (450)
T ss_dssp ECCSTTSCSEEEEETTCEECCCCCCEEESC
T ss_pred ceeeccCCCceeEcCCCeEEEEEecccCCC
Confidence 33211 12334455588888888773
No 27
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=6.9e-37 Score=331.48 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=235.9
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcCeecc---------------ceeEEE-----ecCeeEEEEecCCCCcceEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK---------------GRNITY-----ENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~---------------~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+. ..++.. ..+...|.|.+++.+|+|.|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 567899999999999999999999999985311 112222 224567999999999999999
Q ss_pred EEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 214 CKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 214 C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
|.|.|..+ .+.|.|.....
T Consensus 84 C~~~n~~~----~~~l~V~~~~~--------------------------------------------------------- 102 (363)
T 1wio_A 84 CEVEDQKE----EVQLLVFGLTA--------------------------------------------------------- 102 (363)
T ss_dssp EEETTEEE----EEEEEEEEEEE---------------------------------------------------------
T ss_pred EEEEECCC----cEEEEEEeCCC---------------------------------------------------------
Confidence 99998743 55555553210
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
.|. ..+.+|+.+.|.|.+ +.|.+.+.|+++|..+..
T Consensus 103 ------------------~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------------------ 139 (363)
T 1wio_A 103 ------------------NSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------------------ 139 (363)
T ss_dssp ------------------SSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------------------------
T ss_pred ------------------CCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------------------------
Confidence 011 134569999999999 899999999998654311
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
....|.|.+++.+|+|.|+|.|.+..+....
T Consensus 140 ------------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~- 170 (363)
T 1wio_A 140 ------------------------------------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEF- 170 (363)
T ss_dssp ------------------------------------------------ESSEEEECSBCGGGCEECEEEEEETTEEEEE-
T ss_pred ------------------------------------------------cceEEEEeeCChhcCCEEEEEEecCCCeEEE-
Confidence 1124888889999999999999987655444
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
.+.+.|..+|..+ ....+.+|+.+.|.|.+
T Consensus 171 -----------------------------------------~~~l~v~~~p~~~---------~~~~~~~G~~v~l~C~~ 200 (363)
T 1wio_A 171 -----------------------------------------KIDIVVLAFQKAS---------SIVYKKEGEQVEFSFPL 200 (363)
T ss_dssp -----------------------------------------CCEECEECCSCSE---------EEEEEETBCCEEEECCC
T ss_pred -----------------------------------------EEEEEEecCCCCC---------CceEEecCCEEEEEEEE
Confidence 3445555555432 24668889999999988
Q ss_pred cC-----cCCCeeEEeeCCeeecC--------CCcEEEEe----------cCCeEEEEEeeeccCcCeEEEEEEEcC--C
Q psy2776 533 FG-----FPRPEISWMKNGAEITD--------SKACRIFI----------DEETSTIAIYSVVRADTSTYTVTATNA--A 587 (803)
Q Consensus 533 ~g-----~p~~~v~W~~~g~~i~~--------~~~~~~~~----------~~~~~~L~i~~v~~~dsG~Y~C~a~n~--~ 587 (803)
.+ .|.|.+.|+++|..+.. +.++.+.. ......|.|.++..+|+|.|+|.|.|. .
T Consensus 201 ~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 280 (363)
T 1wio_A 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT 280 (363)
T ss_dssp CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTT
T ss_pred ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhc
Confidence 87 78899999999988776 34444432 222458999999999999999999999 9
Q ss_pred CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 588 GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 588 g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
|..+..+.|.|...
T Consensus 281 g~~~~~~~l~V~~v------------------------------------------------------------------ 294 (363)
T 1wio_A 281 GKLHQEVNLVVMRA------------------------------------------------------------------ 294 (363)
T ss_dssp CCEEEEEEEEEEEE------------------------------------------------------------------
T ss_pred CeEEEEEeEEEEEe------------------------------------------------------------------
Confidence 99888888887420
Q ss_pred CCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCc--eEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEE
Q psy2776 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS--IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYK 745 (803)
Q Consensus 668 ~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~--v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~ 745 (803)
.|+++.|.|.+.|.|.|. +.|+++|..+.. ...|.|.++ +.+|+|.|+
T Consensus 295 ------------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----------~~~l~i~~v-~~~d~G~Y~ 344 (363)
T 1wio_A 295 ------------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----------SKREKAVWV-LNPEAGMWQ 344 (363)
T ss_dssp ------------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----------EESSSEEEE-SSCCSEEEE
T ss_pred ------------------cCCCeeEEEEEccccCCCccEEEEeCCCceee-----------eeeeeeeee-ccccceeEE
Confidence 178899999999999998 999999988743 224678888 789999999
Q ss_pred EEEEccCcceeeeEEEEE
Q psy2776 746 VVATNELGSATHGARVTV 763 (803)
Q Consensus 746 C~a~N~~G~~~~~~~l~V 763 (803)
|.|+|. |....+..|.|
T Consensus 345 C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 345 CLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EEECSS-SSCCEEEEEEE
T ss_pred EEEecC-CeEEEecceEe
Confidence 999964 66677777776
No 28
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=5.8e-36 Score=333.06 Aligned_cols=375 Identities=15% Similarity=0.178 Sum_probs=245.3
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCC----eeEEEEcC--eec-------------cceeE--EEecCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTP----DIKWYKDD--SLI-------------KGRNI--TYENNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p----~i~W~~~~--~~~-------------~~~~~--~~~~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|+.+.|.|.+.+.|.+ .+.|+|++ ..+ ...++ ...++...|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (438)
T 1qgc_4 4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE 83 (438)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence 4444667888999999999999987764 89999963 211 01122 223456789999999
Q ss_pred CCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 206 ESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
.+|+|.|+|.|.|..+.. ...+.|.|......
T Consensus 84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~----------------------------------------------- 116 (438)
T 1qgc_4 84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAA----------------------------------------------- 116 (438)
T ss_dssp GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBC-----------------------------------------------
T ss_pred CcCCeeEEEEEecCCCccccCceeEEecCCCCC-----------------------------------------------
Confidence 999999999999987743 33456666432100
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEEEcCcee
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
+.+....+.... .+|+.+.|.|.+ + .|.+ .+.|+|+|.++..+.....
T Consensus 117 ---------------------P~v~~~~~~~~~-~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~------- 167 (438)
T 1qgc_4 117 ---------------------PTVSIFPPSSEQ-LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW------- 167 (438)
T ss_dssp ---------------------CEEEEECCCHHH-HHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEE-------
T ss_pred ---------------------CEEEecCCChhh-ccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecc-------
Confidence 001111111111 247789999999 5 6776 9999999998876421100
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
.......|.|.+ ...|.|.++..+|+|.|+|.
T Consensus 168 -----~~~~~~~~~~~~-------------------------------------------~~~L~i~~~~~~d~G~Y~C~ 199 (438)
T 1qgc_4 168 -----TDQDSKDSTYSM-------------------------------------------SSTLTLTKDEYERHNSYTCE 199 (438)
T ss_dssp -----ECCCTTTCCEEE-------------------------------------------EEEEEEEHHHHHTCCEEEEE
T ss_pred -----ccccCCCCcEEE-------------------------------------------EEEEEEeCcccCCCCeEEEE
Confidence 111122233322 23589999999999999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEe
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLS 521 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~ 521 (803)
|.|..+..... +.+ ....++. .+. ......+.
T Consensus 200 a~n~~~~~~~~-----------~~~-------------------------------~~~~~~~----~~~--~~~~~~v~ 231 (438)
T 1qgc_4 200 ATHKTSTSPIV-----------KSF-------------------------------NRNECEV----MLV--ESGGGLVK 231 (438)
T ss_dssp EEETTCSSCEE-----------EEE-------------------------------ETTC-CC----EEE--EECCEEEC
T ss_pred EEecccCCcee-----------ccc-------------------------------cccccee----EEe--cCCceEEe
Confidence 99987664321 111 1110000 011 11245688
Q ss_pred ecceeEEEEEEcCcC--CCeeEEeeC--Ceeec-----------------CCCcEEEEec--CCeEEEEEeeeccCcCeE
Q psy2776 522 VKSQWKVEVKYFGFP--RPEISWMKN--GAEIT-----------------DSKACRIFID--EETSTIAIYSVVRADTST 578 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~ 578 (803)
+|+.+.|.|.+.|.| .+.+.|+|+ |..+. ...++.+..+ .....|.|.++..+|+|.
T Consensus 232 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~ 311 (438)
T 1qgc_4 232 PGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAM 311 (438)
T ss_dssp TTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCE
T ss_pred cCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEE
Confidence 999999999999998 679999997 54332 1245555443 345799999999999999
Q ss_pred EEEEEEcCCC-----CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 579 YTVTATNAAG-----STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 579 Y~C~a~n~~g-----~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
|+|.|.|..+ .......|.|...
T Consensus 312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~---------------------------------------------------- 339 (438)
T 1qgc_4 312 YYCVRREDGGDEGFAYWGQGTVVTVSAA---------------------------------------------------- 339 (438)
T ss_dssp EEEEECCSSSCCCCCSBCCCEEEEECSS----------------------------------------------------
T ss_pred EEEEEEccCCCccceeeCCCEEEEEecC----------------------------------------------------
Confidence 9999999544 2223345555321
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeCc---eE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGE---NI 728 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~---~~ 728 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|.++.......+...+. .+
T Consensus 340 ---------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s 404 (438)
T 1qgc_4 340 ---------------KTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS 404 (438)
T ss_dssp ---------------CCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEE
T ss_pred ---------------CCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEE
Confidence 1124555444434456789999999999998 888 999999998875321111222222 23
Q ss_pred EEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 729 ILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 729 ~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.|.|.++ ..+| |.|+|.|.|.+|.......|.
T Consensus 405 ~L~i~~~-~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 405 SVTVPSS-TWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp EEEEEEE-HHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEehh-hcCC-ceEEEEEEeCCCCcceeeecC
Confidence 6899988 5678 999999999999977655543
No 29
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-35 Score=326.21 Aligned_cols=364 Identities=20% Similarity=0.263 Sum_probs=253.7
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEecc-----ccCCeEEEEEEEEccCccC
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL-----TTKHEYMFRVAAVNAIGTG 125 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~c~a~~~~g~~ 125 (803)
.+....|..++|.|......+ .+...|............-......++.|.|.++ +.+|+|.|+|.+.+..+..
T Consensus 30 ~~~v~~G~~v~L~C~~~~~~p-~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~ 108 (403)
T 3laf_A 30 DAVTMRGGNVLLNCSAESDRG-VPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108 (403)
T ss_dssp CEEECTTCCEEECCEEECTTC-CCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCE
T ss_pred ceEEecCCcEEEEEEcCCCCC-CceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCcc
Confidence 355668999999998743211 2222222211111100000111123566788777 6789999999998654332
Q ss_pred CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEe
Q psy2776 126 PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVV 202 (803)
Q Consensus 126 ~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~ 202 (803)
..+... .+.+ ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ...........|.|.
T Consensus 109 ~~s~~~-~l~v-----~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~ 182 (403)
T 3laf_A 109 IISRTA-KVMV-----AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182 (403)
T ss_dssp EECCCE-EEEE-----CCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEEC
T ss_pred EEEEEE-EEEe-----cCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEc
Confidence 222222 2333 2366777777888999999999999999999999999999987632 222222334579999
Q ss_pred cCCCCcceEEEEEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 203 NCSESSEGRYTCKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+++.+|+|.|+|.+.|..+... ..+.+.|...+....
T Consensus 183 ~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~------------------------------------------ 220 (403)
T 3laf_A 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHR------------------------------------------ 220 (403)
T ss_dssp SCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCE------------------------------------------
T ss_pred ccccccCEEEEEEEEcCCCceeccceeEEEecCCCccc------------------------------------------
Confidence 9999999999999999887643 456777765531110
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCce
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQ 360 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 360 (803)
...+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..........
T Consensus 221 ------------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~---- 272 (403)
T 3laf_A 221 ------------------------QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL---- 272 (403)
T ss_dssp ------------------------EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE----
T ss_pred ------------------------CceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC----
Confidence 0011112333445679999999999 88999999999998876433221111
Q ss_pred eEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEE
Q psy2776 361 RKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440 (803)
Q Consensus 361 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 440 (803)
+...|.|.+++.+|+|.|+|
T Consensus 273 ------------------------------------------------------------~~~~L~i~~~~~~d~G~Y~C 292 (403)
T 3laf_A 273 ------------------------------------------------------------GGSNLLISNVTDDDSGTYTC 292 (403)
T ss_dssp ------------------------------------------------------------TTTEEEECSCCGGGCEEEEE
T ss_pred ------------------------------------------------------------CccEEEEeCCCHHHCEEEEE
Confidence 11248899999999999999
Q ss_pred EeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEE
Q psy2776 441 KATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520 (803)
Q Consensus 441 ~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v 520 (803)
.|.|..|.... .+.|.|..+|.+. ..+....+
T Consensus 293 ~a~n~~g~~~~------------------------------------------~~~l~V~~~p~~~------~~~~~~~~ 324 (403)
T 3laf_A 293 VVTYKNENISA------------------------------------------SAELTVLVPPWFL------NHPSNLYA 324 (403)
T ss_dssp EEEETTEEEEE------------------------------------------EEEEEEEEEEEEE------ECCCCEEC
T ss_pred EEEcCCCceEE------------------------------------------EEEEEEECCCcEe------ecCcceEE
Confidence 99999887665 3444454444321 11234667
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.+..+. .++.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 325 ~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 325 YESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp CTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEE---TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEe---cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 88999999999999999999999999999877666554 245799999999999999999999999999999999987
Q ss_pred eE
Q psy2776 601 YI 602 (803)
Q Consensus 601 ~p 602 (803)
+|
T Consensus 402 P~ 403 (403)
T 3laf_A 402 PA 403 (403)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 30
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=4.9e-34 Score=297.66 Aligned_cols=277 Identities=29% Similarity=0.441 Sum_probs=226.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce---eEEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR---NITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|+|++..+... .+....+...|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 36788888889999999999999999999999999999999887632 344455678999999999999999999999
Q ss_pred CCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 219 EAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
..|....++.|.|..+|.
T Consensus 83 ~~g~~~~~~~l~V~~~p~-------------------------------------------------------------- 100 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPR-------------------------------------------------------------- 100 (284)
T ss_dssp TTEEEEEEEEEEEECCCE--------------------------------------------------------------
T ss_pred CCceEEEEEEEEccCCCc--------------------------------------------------------------
Confidence 999887788888876531
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
+....+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......+..
T Consensus 101 ---------~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~--------------------- 150 (284)
T 2rik_A 101 ---------FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSF--------------------- 150 (284)
T ss_dssp ---------EEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEE---------------------
T ss_pred ---------ccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEE---------------------
Confidence 11122233456679999999999 89999999999999887654433322
Q ss_pred EEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCC
Q psy2776 378 VLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPG 457 (803)
Q Consensus 378 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~ 457 (803)
..+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 151 -----------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~------ 183 (284)
T 2rik_A 151 -----------------------------------------VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS------ 183 (284)
T ss_dssp -----------------------------------------ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE------
T ss_pred -----------------------------------------cCCEEEEEECCCCcccCEEEEEEEEcCCCceeE------
Confidence 223456888899999999999999999887665
Q ss_pred CCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC
Q psy2776 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR 537 (803)
Q Consensus 458 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~ 537 (803)
.+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.
T Consensus 184 ------------------------------------~~~l~V~~~p~~~~~------~~~~~~~~g~~v~l~C~~~g~p~ 221 (284)
T 2rik_A 184 ------------------------------------STSLKVKEPPVFRKK------PHPVETLKGADVHLECELQGTPP 221 (284)
T ss_dssp ------------------------------------EEEEEEECCCBCCSC------CCCEEECTTCCEEEEEECBSSSC
T ss_pred ------------------------------------EEEEEEecCCcceeC------CCcceecCCCeEEEEEEEEecCC
Confidence 455566666654321 12466789999999999999999
Q ss_pred CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 538 PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 538 ~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.+.|+++|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 222 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 222 FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp CEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99999999999998888888777777899999999999999999999999999999999885
No 31
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=321.47 Aligned_cols=389 Identities=12% Similarity=0.116 Sum_probs=215.7
Q ss_pred ccCCcEEEEEEEEcCCCCce-e---eEE---------EEEec-CCCCC--CC-ceEEEecCCeEEEEeeCCCCCCCCCeE
Q psy2776 14 EDKDLGDYTISLSNALGQAS-A---TTK---------VTLLS-APGAP--DT-PEIVGRSDSSVTLHWRPPQDDGHSPVT 76 (803)
Q Consensus 14 ~~~D~G~Y~C~a~n~~g~~~-~---~~~---------l~V~~-~p~~p--~~-~~~~~~~~~~v~l~c~~p~~~g~~~~~ 76 (803)
...|.|.|+|.+.+..+..+ . ..+ |.... ++.+. .. ..+...+|+.+.|.|..... ..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~--P~p~i 80 (423)
T 3qs7_E 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAP--GNISC 80 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEECSCC--SSCEE
T ss_pred ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcC--CCCeE
Confidence 45799999999998755431 1 112 11111 11111 11 14556689999999997542 22322
Q ss_pred EEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeee
Q psy2776 77 GYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVA 156 (803)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v 156 (803)
.|......................|.|.+++.+|+|.|+|.|.|..|... ... .+.+. .+|.+. ......+
T Consensus 81 ~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~--~~~-~l~V~-----~~p~~~-~~~p~~~ 151 (423)
T 3qs7_E 81 LWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT--ILF-TVSIR-----NTLLYT-LRRPYFR 151 (423)
T ss_dssp EEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEE--EEE-EEEEC----------C-EEEEEEE
T ss_pred EEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEE--EEE-EEEEe-----cCcccc-ccCCcEe
Confidence 33221111111101110111134699999999999999999999877532 222 22232 223322 1122345
Q ss_pred ecCCcEEEEEEECccCCCeeEEEEcCeeccceeEE----EecCeeEEEEecCCCCcceEEEEEEEcCCcCeee-EEEEEE
Q psy2776 157 GFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNIT----YENNVARFTVVNCSESSEGRYTCKATNEAGTAET-SCTLLV 231 (803)
Q Consensus 157 ~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-s~~l~V 231 (803)
..|+.+.|.|.+.|+|.|.|.|++++..+...... .......| ..+|+|.|+|.|.|..|.... .+.|.|
T Consensus 152 ~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~~~~~l~V 226 (423)
T 3qs7_E 152 KMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVL-----HELFGTDIRCCARNELGRECTRLFTIDL 226 (423)
T ss_dssp ECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEE-----CCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred ccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEE-----ecccCeEEEEEEEcCCCCcceeeEEEEE
Confidence 56888999999999999999999988754321100 11111122 688999999999999987654 245555
Q ss_pred eeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcccccccc
Q psy2776 232 QGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSK 311 (803)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (803)
...+..
T Consensus 227 ~~~p~~-------------------------------------------------------------------------- 232 (423)
T 3qs7_E 227 NQTPQT-------------------------------------------------------------------------- 232 (423)
T ss_dssp SSCCCS--------------------------------------------------------------------------
T ss_pred ecCCcc--------------------------------------------------------------------------
Confidence 443210
Q ss_pred CCceeeeccccceeEEEEe-c-CCceeeEEeecCeeccccceeEEEEc-CceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-S-SPDIQVKWLKKGKEIKESARHIITSR-GTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~-~p~~~i~W~~~g~~l~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
.+....+.+|+.+.|.|.+ + .|.+.+.|+|+|..+........... +.
T Consensus 233 ~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~----------------------------- 283 (423)
T 3qs7_E 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN----------------------------- 283 (423)
T ss_dssp STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETT-----------------------------
T ss_pred CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCC-----------------------------
Confidence 1123456679999999999 6 77899999999988865432211100 00
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
. .......|.|.+++.+|+|.|+|.|.|. ...
T Consensus 284 --------------------------~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~----------------- 315 (423)
T 3qs7_E 284 --------------------------R--TMIRILFAFVSSVARNDTGYYTCSSSKH---PSQ----------------- 315 (423)
T ss_dssp --------------------------T--EEEEEEEEEESSCCTTTCEEEEEEETTE---EEE-----------------
T ss_pred --------------------------c--eeEEEEEEEEeecCHHHCEEEEEEEecC---CCc-----------------
Confidence 0 0012245999999999999999999997 222
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.+... .......+.+|+.+.|.|.+.|.|.|.++|+|+|..
T Consensus 316 -------------------------~~~L~V~~~p~i~~~----~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~ 366 (423)
T 3qs7_E 316 -------------------------SALVTIVEKGFINAT----NSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKS 366 (423)
T ss_dssp -------------------------EEEEEEESSCEEEEC-------CEECCCTTCCCCEEEEEEEESCCEEEEEETTEE
T ss_pred -------------------------eEEEEEEeCCcceEc----CCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEE
Confidence 344555555432111 011245678899999999999999999999999999
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
|..+.+. ..+...+.+..+..+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 367 l~~~~~~----~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p 416 (423)
T 3qs7_E 367 FPCEQKG----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416 (423)
T ss_dssp EECBCCB----CSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred CCCcccc----ccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence 8764310 0011223335667799999999999999999999999998876
No 32
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.3e-34 Score=314.02 Aligned_cols=355 Identities=17% Similarity=0.232 Sum_probs=237.8
Q ss_pred ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEecc-ccCCeEEEEEEEEccCccCCCcceeeE
Q psy2776 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKL-TTKHEYMFRVAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 55 ~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~c~a~~~~g~~~~s~~~~~ 133 (803)
.+|..+.|.|.+... ..+...|.......... ...+....++.|.|.+. +.+|+|.|+|.|.|..|...... ..+
T Consensus 21 ~eg~~v~L~C~~~g~--P~p~i~W~k~g~~l~~~-~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~-~~l 96 (384)
T 3kld_A 21 SEEKKVKLSCEVKGN--PKPHIRWKLNGTDVDIG-MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE-AKL 96 (384)
T ss_dssp CSCSEEEECCEEEEE--SCCEEEEEETTEECCC-----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCC-EEE
T ss_pred CCCCeEEEEeEecCC--CCCEEEEEECCEECcCC-CCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecc-eEE
Confidence 468999999986311 12322333222211111 01112223566788776 78999999999999988632221 122
Q ss_pred EEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCCCCcceE
Q psy2776 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCSESSEGR 211 (803)
Q Consensus 134 ~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~ 211 (803)
.....+ +..........+.+|+.+.|.|... +.|.+.+.|++++..+.. .+.........|.|.+++.+|+|.
T Consensus 97 ~v~~~~-----~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 171 (384)
T 3kld_A 97 QFAYLE-----NFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171 (384)
T ss_dssp EEEEEC-----CCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEE
T ss_pred EEeccc-----ccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCce
Confidence 221111 1111123456788999999999765 467789999999987643 222333345679999999999999
Q ss_pred EEEEEEcCCcCeeeE---EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccc
Q psy2776 212 YTCKATNEAGTAETS---CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSD 288 (803)
Q Consensus 212 Y~C~a~n~~g~~~~s---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (803)
|+|.|.|..+..... ..+.+......
T Consensus 172 Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~--------------------------------------------------- 200 (384)
T 3kld_A 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVM--------------------------------------------------- 200 (384)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEEEEEEC---------------------------------------------------
T ss_pred EEEEEecccccceeeCCceEEEEccCCcc---------------------------------------------------
Confidence 999999988765321 12222211000
Q ss_pred cccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeec-CeeccccceeEEEEcCceeEEEEe
Q psy2776 289 LESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKK-GKEIKESARHIITSRGTQRKLVIK 366 (803)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~-g~~l~~~~~~~~~~~~~~~~l~i~ 366 (803)
....+.+....+....+.+|+.+.|.|.+ |.|.+.+.|+|+ +.++......
T Consensus 201 -------------~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-------------- 253 (384)
T 3kld_A 201 -------------GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR-------------- 253 (384)
T ss_dssp -------------CCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEE--------------
T ss_pred -------------cccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccccee--------------
Confidence 00011122223445556779999999999 899999999995 5455432110
Q ss_pred ecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc
Q psy2776 367 RVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA 446 (803)
Q Consensus 367 ~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~ 446 (803)
......|.|.+++.+|+|.|+|.|.|..
T Consensus 254 ----------------------------------------------------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 281 (384)
T 3kld_A 254 ----------------------------------------------------HKSNGILEIPNFQQEDAGSYECVAENSR 281 (384)
T ss_dssp ----------------------------------------------------CTTSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred ----------------------------------------------------cCCCcEEEECCCChhhCEEEEEEEEcCC
Confidence 0112358899999999999999999999
Q ss_pred eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeeccee
Q psy2776 447 GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQW 526 (803)
Q Consensus 447 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v 526 (803)
|.... ...|.|..+|.+.. .+....+.+|+.+
T Consensus 282 G~~~~------------------------------------------~~~l~v~~~P~~~~------~~~~~~v~~g~~v 313 (384)
T 3kld_A 282 GKNVA------------------------------------------KGQLTFYAQPNWVQ------IINDIHVAMEESV 313 (384)
T ss_dssp EEEEE------------------------------------------EEEEEEEEEEEEEE------CCCCEEECTTCCE
T ss_pred CeEEE------------------------------------------EEEEEEecCCcccc------CCCceEecCCCCE
Confidence 98776 33444444443211 1235678899999
Q ss_pred EEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 527 KVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 527 ~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.|.|.|.++|+|+|..+....++.+. +.+|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 314 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EEECEEEEESCCEEEEEETTEECCCBTTEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEEeECCccCCCeEEEEECCEECCCCccEEEe----CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 99999999999999999999999877666543 24899999999999999999999999999999999864
No 33
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.4e-33 Score=309.14 Aligned_cols=378 Identities=18% Similarity=0.237 Sum_probs=244.5
Q ss_pred EecCCCCCCCc-eEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEeccccCCeEEEEEEE
Q psy2776 40 LLSAPGAPDTP-EIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTTKHEYMFRVAA 118 (803)
Q Consensus 40 V~~~p~~p~~~-~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~a 118 (803)
|..+|.....| .+....|..++|.|..... ...+...|...................+..|.|.+++.+|.|.|+|.+
T Consensus 3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (395)
T 1bih_A 3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGN-DQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFA 81 (395)
T ss_dssp --CCCEECCCCSEEEEETTSCEEECCCEESC-CSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEE
T ss_pred cCCCCEeecCCCceEEeCCCEEEEEEEEecC-CCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEE
Confidence 44455433333 4556789999999987431 112222222221111111001112224678999999999999999999
Q ss_pred EccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEE-CccCCCeeEEEEcCe---ecc-----cee
Q psy2776 119 VNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDS---LIK-----GRN 189 (803)
Q Consensus 119 ~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~---~~~-----~~~ 189 (803)
.|..|..... ...+..... ..|.+ .+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++. ... ..+
T Consensus 82 ~n~~g~~~s~-~~~l~v~~~----~~p~~--~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 154 (395)
T 1bih_A 82 ETPAGVASSR-VISFRKTYL----IASPA--KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154 (395)
T ss_dssp EETTEEEECC-CEEEEEEEE----ECCCC--EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTT
T ss_pred EeCCCeEEeE-EEEEEEEEe----ecCCc--CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccccc
Confidence 9987753211 111111111 11222 2345667899999999996 689999999999862 111 122
Q ss_pred EEEecCeeEEEEecCCCCcce---EEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcce
Q psy2776 190 ITYENNVARFTVVNCSESSEG---RYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDI 266 (803)
Q Consensus 190 ~~~~~~~~~L~i~~v~~~d~G---~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (803)
+... ....|.|.+++.+|+| .|+|.|.|..|....................
T Consensus 155 ~~~~-~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~------------------------- 208 (395)
T 1bih_A 155 ITAG-PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSG------------------------- 208 (395)
T ss_dssp EEEC-TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSC-------------------------
T ss_pred EEEc-CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccccc-------------------------
Confidence 3332 2347999999999999 9999999999876544332221110000000
Q ss_pred eEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCee
Q psy2776 267 GVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKE 345 (803)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~ 345 (803)
......+.+ .+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..
T Consensus 209 ---------------------------------~~~~~~p~~---~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~ 252 (395)
T 1bih_A 209 ---------------------------------YKGEPVPQY---VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252 (395)
T ss_dssp ---------------------------------CCCCCEEEE---ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEE
T ss_pred ---------------------------------ccCCcCcee---cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEE
Confidence 000011111 1234456779999999999 899999999999988
Q ss_pred ccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEE
Q psy2776 346 IKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARF 425 (803)
Q Consensus 346 l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 425 (803)
+.......+.... ..+...|
T Consensus 253 ~~~~~~~~~~~~~------------------------------------------------------------~~~~~~L 272 (395)
T 1bih_A 253 VNGNPEDRITRHN------------------------------------------------------------RTSGKRL 272 (395)
T ss_dssp CCCCTTSSEESCS------------------------------------------------------------SSTTSEE
T ss_pred cCCCCceeEEEEe------------------------------------------------------------cCCCceE
Confidence 8653221111000 0122358
Q ss_pred EEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCC
Q psy2776 426 TVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQ 505 (803)
Q Consensus 426 ~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~ 505 (803)
.|.+++.+|+|.|+|.|.|..|..... .+.|.|..+|.+
T Consensus 273 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~-----------------------------------------~~~l~V~~~P~~ 311 (395)
T 1bih_A 273 LFKTTLPEDEGVYTCEVDNGVGKPQKH-----------------------------------------SLKLTVVSAPKY 311 (395)
T ss_dssp EESSCCGGGCEEEEEEECCSSSSCEEE-----------------------------------------EEEEEEEEEEEE
T ss_pred EEccCChhhCEEEEEEEEeCCCCceEE-----------------------------------------EEEEEEEcCCcc
Confidence 899999999999999999988875541 344445555432
Q ss_pred ccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 506 PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 506 ~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
.. .+.....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+ ++.+. . ..|.|.++..+|+|.|+|.|.|
T Consensus 312 ~~-----~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~--~~L~i~~~~~~d~G~Y~C~a~N 381 (395)
T 1bih_A 312 EQ-----KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--D--SGLVIKGVKNGDKGYYGCRATN 381 (395)
T ss_dssp EE-----CCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--T--TEEEESSCCSTTCEEEEEEEEE
T ss_pred cc-----CCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--C--CEEEEeeCCcccCEEEEEEEEc
Confidence 11 1111267889999999999999999999999999998765 44432 2 2899999999999999999999
Q ss_pred CCCCeEEEEEEEE
Q psy2776 586 AAGSTSLDLSLQV 598 (803)
Q Consensus 586 ~~g~~s~s~~l~V 598 (803)
..|....++.|.|
T Consensus 382 ~~G~~~~~~~l~V 394 (395)
T 1bih_A 382 EHGDKYFETLVQV 394 (395)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCCCceEEEEEEE
Confidence 9999999999887
No 34
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=4.3e-33 Score=303.87 Aligned_cols=351 Identities=17% Similarity=0.214 Sum_probs=239.0
Q ss_pred ecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeeeeeEEEEecccc-CCeEEEEEEEEccCccCCCcceeeE
Q psy2776 55 RSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETTSTTYEVTKLTT-KHEYMFRVAAVNAIGTGPASHNTRY 133 (803)
Q Consensus 55 ~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~a~~~~g~~~~s~~~~~ 133 (803)
..|..++|.|..... ..+...|.......... ...+....++.|.|.++.. +|+|.|+|.+.|..|.... ....+
T Consensus 20 ~~g~~v~l~C~~~g~--p~~~v~W~k~g~~~~~~-~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s-~~~~l 95 (382)
T 1cs6_A 20 SAEEKVTLTCRARAN--PPATYRWKMNGTELKMG-PDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVS-REASL 95 (382)
T ss_dssp CSCCEEEECCEEEEE--SCCEEEEEETTEECCCS-TTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEEC-CCEEE
T ss_pred CCCCcEEEEEEecCC--CCCEEEEEECCEECCcC-CCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEe-cceEE
Confidence 468999999986311 11222222211111100 0001112356899999986 9999999999998775321 11222
Q ss_pred EEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEE-CccCCCeeEEEEcCeecc---ceeEEEecCeeEEEEecCCCCcc
Q psy2776 134 VVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIK---GRNITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 134 ~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~ 209 (803)
.+...+ +.....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+. ..+.........|.|.+++.+|+
T Consensus 96 ~v~~~~-----~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 170 (382)
T 1cs6_A 96 RFGFLQ-----EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170 (382)
T ss_dssp EEEEEC-----CCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGC
T ss_pred Eeeccc-----cccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccC
Confidence 221111 111122456788899999999996 467889999999987542 22333334456899999999999
Q ss_pred eEEEEEEEcCCcCeeeE-----EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 210 GRYTCKATNEAGTAETS-----CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s-----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
|.|+|.+.|..|..... +.|.|.....
T Consensus 171 G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~------------------------------------------------ 202 (382)
T 1cs6_A 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDA------------------------------------------------ 202 (382)
T ss_dssp EEEEEEEEEEETTEEEEEECCCEEEEEESCCC------------------------------------------------
T ss_pred eeEEEEEEEccccccceeEccceeeccchhhc------------------------------------------------
Confidence 99999999987643332 2333322100
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEE
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l 363 (803)
....+.+....+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....
T Consensus 203 -----------------~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~------------- 252 (382)
T 1cs6_A 203 -----------------RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------------- 252 (382)
T ss_dssp -----------------CCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC-------------
T ss_pred -----------------ccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEE-------------
Confidence 00011222233445566789999999999 89999999999876654300
Q ss_pred EEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 443 (803)
......|.|.+++.+|+|.|+|.|.
T Consensus 253 -------------------------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~ 277 (382)
T 1cs6_A 253 -------------------------------------------------------LSSEPLLHIQNVDFEDEGTYECEAE 277 (382)
T ss_dssp -------------------------------------------------------SBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred -------------------------------------------------------ecCCcEEEEccCChhhCEEEEEEEE
Confidence 0122358888999999999999999
Q ss_pred CCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeec
Q psy2776 444 NEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523 (803)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g 523 (803)
|..|.... .+.|.|..+|.+.. .+....+.+|
T Consensus 278 n~~g~~~~------------------------------------------~~~l~V~~~p~~~~------~~~~~~~~~g 309 (382)
T 1cs6_A 278 NIKGRDTY------------------------------------------QGRIIIHAQPDWLD------VITDTEADIG 309 (382)
T ss_dssp ETTEEEEE------------------------------------------EEEEEEEEEEEEEE------CCCCEEEETT
T ss_pred cCCCeEEE------------------------------------------EEEEEEecCCCccc------CCCccEEcCC
Confidence 99888655 33444444443211 1234678899
Q ss_pred ceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 524 SQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 524 ~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+. +..|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 310 ~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 310 SDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp CCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE----CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99999999999999999999999999887766553 2489999999999999999999999999999999885
No 35
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=289.06 Aligned_cols=281 Identities=23% Similarity=0.320 Sum_probs=195.6
Q ss_pred ccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
+.|... |....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+............
T Consensus 7 P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~-------------------------- 59 (304)
T 2yd9_A 7 PRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDE-------------------------- 59 (304)
T ss_dssp CEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETT--------------------------
T ss_pred Ceeeec-CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecC--------------------------
Confidence 344443 445566789999999999 8999999999999887543221111010
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccC-CCceeEEEEeeCCceeeeeecccCCCCceeE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSE-SSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~ 463 (803)
+....|.|.+++. +|+|.|+|.|.|..|....
T Consensus 60 -----------------------------------~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~------------ 92 (304)
T 2yd9_A 60 -----------------------------------SAGAVLRIQPLRTPRDENVYECVAQNSVGEITV------------ 92 (304)
T ss_dssp -----------------------------------TTEEEEEECSCCTTTTCSEEEEEEECSSCEECC------------
T ss_pred -----------------------------------CCceEEEEecccccCCCeEEEEEEECCCCeEEE------------
Confidence 1235688999997 9999999999998887544
Q ss_pred EeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCcc-ceeeeccccceEEeecceeEEEEEEcCcCCCeeEE
Q psy2776 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPA-IKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542 (803)
Q Consensus 464 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 542 (803)
.+.|.|..++..+. ...+...+....+.+|+.+.|.|.+.|.|.+.+.|
T Consensus 93 ------------------------------~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 142 (304)
T 2yd9_A 93 ------------------------------HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142 (304)
T ss_dssp ------------------------------EEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEE
T ss_pred ------------------------------EEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEE
Confidence 33334433322110 01111222356788999999999999999999999
Q ss_pred eeCCeeecCCC-cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE-EEEEEeeeEeEeeecccccEEEeeeeC
Q psy2776 543 MKNGAEITDSK-ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD-LSLQVLGYIIQQQEKNSLKFTKVATLD 620 (803)
Q Consensus 543 ~~~g~~i~~~~-~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s-~~l~V~~~p~~~~~~~~~~w~~~~~~~ 620 (803)
+++|..+.... ..++... ....|.|.++..+|+|.|+|.|.|..|..... ..|.|...
T Consensus 143 ~k~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~------------------- 202 (304)
T 2yd9_A 143 FKDFLPVDPSASNGRIKQL-RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ------------------- 202 (304)
T ss_dssp EETTEECCGGGGTTSEEEC-TTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-------------------
T ss_pred EECCEECcCCCCcceEEeC-CCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee-------------------
Confidence 99999887542 1122222 23489999999999999999999998876532 44444321
Q ss_pred CccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC
Q psy2776 621 PSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP 700 (803)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p 700 (803)
..+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus 203 -------------------------------------------------~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p 233 (304)
T 2yd9_A 203 -------------------------------------------------NVAPRFSILPMSHEIMPGGNVNITCVAVGSP 233 (304)
T ss_dssp -------------------------------------------------CEEEEEEECCCCBCCCTTCCEEEEEEEEEES
T ss_pred -------------------------------------------------ccCCcEEecCCceEEcCCCeEEEEEEEeeeC
Confidence 0156666666677889999999999999999
Q ss_pred CCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 701 APSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 701 ~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
.|.+.|+++|..+..+.++ ......|.|.++ +|+|.|+|.|.|.+|..+.++.|.|+..
T Consensus 234 ~p~v~W~~~~~~l~~~~~~----~~~~~~L~i~~~---~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 234 MPYVKWMQGAEDLTPEDDM----PVGRNVLELTDV---KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp CCEEEEEETTEECSCSSSC----CBSEEEEEECSC---CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred CCEEEEEECCEECCCcccc----cCCcEEEEEccc---ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 9999999999999776543 234557888765 5999999999999999999999999653
No 36
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=8e-33 Score=293.35 Aligned_cols=295 Identities=18% Similarity=0.292 Sum_probs=213.8
Q ss_pred cccccccCCceeeeccccceeEEEEe-cC-CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 305 AVEFLSKLPSVTLVPHLGDATFQVEL-SS-PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 305 ~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
.+.|.... ...+.+|+.+.|.|.+ +. |.+.+.|+|+|..+..+.++.+.
T Consensus 7 ~P~~~~~~--~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------------------------- 57 (317)
T 2y25_A 7 GPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--------------------------- 57 (317)
T ss_dssp CCEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------------------------------
T ss_pred CCcEeeee--eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE---------------------------
Confidence 34454332 3667789999999999 55 78999999999888754433221
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
.+...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 58 -------------------------------------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~---------- 90 (317)
T 2y25_A 58 -------------------------------------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR---------- 90 (317)
T ss_dssp --------------------------------------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEE----------
T ss_pred -------------------------------------CCeEEEEEccCCcccCeEEEEEEECCCCcEEEE----------
Confidence 233568899999999999999999988876552
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC--------
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-------- 534 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-------- 534 (803)
+.|.+..+|.+.. ......+..|+.+.|.|.+.+
T Consensus 91 --------------------------------~~l~v~~~~~~~~------~~~~~~~~~g~~~~l~c~~~~~~l~c~~~ 132 (317)
T 2y25_A 91 --------------------------------LKLVDEAFKELMM------EVCKKIALSATDLKIQSTAEGIQLYSFVT 132 (317)
T ss_dssp --------------------------------ECCSTHHHHHHHH------HHHHHHHTCBCCCEEEECSSEEEEEEEBS
T ss_pred --------------------------------EEEEEecCccccc------cCCceecccCCCeEEEeeccccEEEEEec
Confidence 2222222221100 001223345666666666555
Q ss_pred --cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeeccccc
Q psy2776 535 --FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLK 612 (803)
Q Consensus 535 --~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~ 612 (803)
.|.+.+.|+++|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|......
T Consensus 133 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~-------- 204 (317)
T 2y25_A 133 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA-------- 204 (317)
T ss_dssp SCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHH--------
T ss_pred cCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeecccc--------
Confidence 6889999999999998888888877777789999999999999999999999998888888776431100
Q ss_pred EEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEE
Q psy2776 613 FTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIR 691 (803)
Q Consensus 613 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~ 691 (803)
.......... .. ....+|.+... +....+.+|+.+.
T Consensus 205 -----------------------------------------~~~~~~~~~~-~~-~~~~~p~~~~~~~~~~~v~~g~~~~ 241 (317)
T 2y25_A 205 -----------------------------------------YAEFQRLKQA-AI-AEKNRARVLGGLPDVVTIQEGKALN 241 (317)
T ss_dssp -----------------------------------------HHHHHHHHHH-HH-HTTTSCEEEEBCCSEEEEETTSBBC
T ss_pred -----------------------------------------chhhcccCCc-cc-CcCCCCcccccCCccEEEEcCCEEE
Confidence 0000000000 00 01124445444 4457899999999
Q ss_pred EEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 692 LMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 692 L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.|.+.|.|.|.+.|+++|..+..+.++.+..+ +....|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 242 l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV-STADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSC-CSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCC-CHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 999999999999999999999998888877766 77789999999 79999999999999999999999999864
No 37
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=4.4e-33 Score=306.14 Aligned_cols=361 Identities=19% Similarity=0.244 Sum_probs=238.3
Q ss_pred EEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCce-eEEEeeeeeeEEEEe----ccccCCeEEEEEEEEccCccCCC
Q psy2776 53 VGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFM-VWNKIETTSTTYEVT----KLTTKHEYMFRVAAVNAIGTGPA 127 (803)
Q Consensus 53 ~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~----~~~~~d~g~y~c~a~~~~g~~~~ 127 (803)
....|..++|.|..... ..+...|........... ........++.|.|. +++.+|+|.|+|.+.|..|...
T Consensus 28 ~v~~G~~v~l~C~~~g~--p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~- 104 (404)
T 3p3y_A 28 IVDPRDNILIECEAKGN--PAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL- 104 (404)
T ss_dssp EECSSSCCCCCEEECCS--SCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEE-
T ss_pred EEcCCCCEEEEEEecCC--CCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEe-
Confidence 45579999999996322 122222222111100000 000111134556664 7889999999999999877531
Q ss_pred cceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEE-CccCCCeeEEEEcCeec-cceeEEEecCeeEEEEecCC
Q psy2776 128 SHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLI-KGRNITYENNVARFTVVNCS 205 (803)
Q Consensus 128 s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~~~-~~~~~~~~~~~~~L~i~~v~ 205 (803)
+... .+.+..+ +...........+.+|+.+.|.|.+ .+.|.+.+.|++++... .............|.|.++.
T Consensus 105 s~~~-~l~V~~~----p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~ 179 (404)
T 3p3y_A 105 SNRI-RLQVSKS----PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM 179 (404)
T ss_dssp EEEE-EEEECCC----CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCC
T ss_pred eeeE-EEEEecc----CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeee
Confidence 1222 2233221 1112223455788999999999999 78899999999987433 22222222334579999999
Q ss_pred CCc-ceEEEEEEEcCCcCeeeE---EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 206 ESS-EGRYTCKATNEAGTAETS---CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 206 ~~d-~G~Y~C~a~n~~g~~~~s---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
.+| +|.|+|.+.|..+..... ..+.|...+...
T Consensus 180 ~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~------------------------------------------- 216 (404)
T 3p3y_A 180 LQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA------------------------------------------- 216 (404)
T ss_dssp SGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCC-------------------------------------------
T ss_pred eccCCcceEEEEEeccccceeccCceeEEEeccCCcc-------------------------------------------
Confidence 999 599999999988764332 344444321000
Q ss_pred eeccccccccceeeeeeccCCCcccccccc--CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcC
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSK--LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRG 358 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~ 358 (803)
...+.+... .+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......
T Consensus 217 ---------------------~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~----- 270 (404)
T 3p3y_A 217 ---------------------ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF----- 270 (404)
T ss_dssp ---------------------CCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEE-----
T ss_pred ---------------------ccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccc-----
Confidence 000111111 1234456779999999999 88999999999998886543211
Q ss_pred ceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeE
Q psy2776 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438 (803)
Q Consensus 359 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 438 (803)
......|.|.+++.+|+|.|
T Consensus 271 ------------------------------------------------------------~~~~~~L~i~~~~~~d~G~Y 290 (404)
T 3p3y_A 271 ------------------------------------------------------------ENFNKALRITNVSEEDSGEY 290 (404)
T ss_dssp ------------------------------------------------------------EGGGTEEEESSCCGGGCEEE
T ss_pred ------------------------------------------------------------cccCceEEEccCCHhHCEEE
Confidence 11123588999999999999
Q ss_pred EEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccce
Q psy2776 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQ 518 (803)
Q Consensus 439 ~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~ 518 (803)
+|.|.|..|.... .+.|.|..+|.+. ..+...
T Consensus 291 ~C~a~n~~g~~~~------------------------------------------~~~l~V~~~p~~~------~~~~~~ 322 (404)
T 3p3y_A 291 FCLASNKMGSIRH------------------------------------------TISVRVKAAPYWL------DEPKNL 322 (404)
T ss_dssp EEEEECSSCEEEE------------------------------------------EEEEEEEEEEEEE------ECCCCE
T ss_pred EEEEEeCCCcEEE------------------------------------------EEEEEEeCCCeee------ccCCcc
Confidence 9999999887665 3444454444321 112356
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc-EEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA-CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~-~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
.+.+|+.+.|.|.+.|.|.|.+.|+++|..+..... ..... .+..|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 323 ~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 400 (404)
T 3p3y_A 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV--AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400 (404)
T ss_dssp EECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE--ETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEE
T ss_pred eeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe--cCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEE
Confidence 788999999999999999999999999999876531 11111 134899999999999999999999999999999998
Q ss_pred Eee
Q psy2776 598 VLG 600 (803)
Q Consensus 598 V~~ 600 (803)
|.+
T Consensus 401 V~d 403 (404)
T 3p3y_A 401 VLD 403 (404)
T ss_dssp EC-
T ss_pred EEe
Confidence 864
No 38
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=2.2e-32 Score=298.85 Aligned_cols=353 Identities=14% Similarity=0.193 Sum_probs=233.5
Q ss_pred eEEEecCCeEEEEeeCCCCCCCCCeEEEEE-EeecCCCceeEEEeeeeeeEEEEeccccCC------eEEEEEEEEccCc
Q psy2776 51 EIVGRSDSSVTLHWRPPQDDGHSPVTGYVL-ESHDKDEFMVWNKIETTSTTYEVTKLTTKH------EYMFRVAAVNAIG 123 (803)
Q Consensus 51 ~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~g~y~c~a~~~~g 123 (803)
.+....|..++|.|..... ..+...|.. ........ .-......++.|.|.+++.+| +|.|+|.|.|..|
T Consensus 13 ~~~~~~G~~v~l~C~~~g~--p~p~v~W~k~~g~~~~~~-~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g 89 (388)
T 2v5m_A 13 RIDFSNSTGAEIECKASGN--PMPEIIWIRSDGTAVGDV-PGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG 89 (388)
T ss_dssp EEEEETTTCEEEECEEEEE--SCCEEEEEETTSCBCCCB-TTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred eEEEEcCccEEEEEECCCC--CCCEEEEEcCCCCccccC-CCceEEcCCceEEecccChhhccccccCceEEEEEEccCC
Confidence 3445679999999986311 112222221 11111100 000111245789999999887 9999999999887
Q ss_pred cCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCC---CeeEEEEcCeeccc------eeEEEec
Q psy2776 124 TGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWYKDDSLIKG------RNITYEN 194 (803)
Q Consensus 124 ~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~~~~~~~------~~~~~~~ 194 (803)
... +....+... .+|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++..+.. .+....
T Consensus 90 ~~~-s~~~~v~v~------~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~- 161 (388)
T 2v5m_A 90 SII-SRDVHVRAV------VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL- 161 (388)
T ss_dssp EEE-CCCEEEEEE------CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-
T ss_pred eEE-ecceEEEEc------cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-
Confidence 532 222222222 2344445566788899999999999987653 68999999876521 222222
Q ss_pred CeeEEEEecCCCCcc-eEEEEEEEcCCcCeee-E---EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEE
Q psy2776 195 NVARFTVVNCSESSE-GRYTCKATNEAGTAET-S---CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVL 269 (803)
Q Consensus 195 ~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~~-s---~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (803)
....|.|.+++.+|+ |.|+|.+.|..+.... + ..|.|..+....
T Consensus 162 ~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~------------------------------- 210 (388)
T 2v5m_A 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSS------------------------------- 210 (388)
T ss_dssp TTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCE-------------------------------
T ss_pred cCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCC-------------------------------
Confidence 235799999999999 9999999998654322 2 234444331000
Q ss_pred EEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccc
Q psy2776 270 ALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKE 348 (803)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~ 348 (803)
.+.+.........+.+|+.+.|.|.+ +.|.+.+.|+|++..+..
T Consensus 211 -----------------------------------~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~ 255 (388)
T 2v5m_A 211 -----------------------------------APRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR 255 (388)
T ss_dssp -----------------------------------EEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSC
T ss_pred -----------------------------------CCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcc
Confidence 00000001111234569999999999 889999999998654432
Q ss_pred cceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEE
Q psy2776 349 SARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVV 428 (803)
Q Consensus 349 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 428 (803)
..... .. ..+. .....|.|.
T Consensus 256 ~~~~~--~~--------------------------------------------------------~~~~--~~~~~L~i~ 275 (388)
T 2v5m_A 256 KQAVV--LN--------------------------------------------------------DRVK--QVSGTLIIK 275 (388)
T ss_dssp EEECC--CS--------------------------------------------------------SSEE--EETTEEEES
T ss_pred ccccc--cc--------------------------------------------------------Ccee--cccCEEEEC
Confidence 11100 00 0000 112358999
Q ss_pred eccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccc
Q psy2776 429 NCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAI 508 (803)
Q Consensus 429 ~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~ 508 (803)
+++.+|+|.|+|.|.|..|.... .+.|.|..+|.+..
T Consensus 276 ~v~~~d~G~Y~C~a~n~~g~~~~------------------------------------------~~~l~V~~~p~~~~- 312 (388)
T 2v5m_A 276 DAVVEDSGKYLCVVNNSVGGESV------------------------------------------ETVLTVTAPLSAKI- 312 (388)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEE------------------------------------------EEEEEEEEEEEEEE-
T ss_pred cCCHHHCeEEEEEEecCCCceeE------------------------------------------EEEEEEeCCCcccc-
Confidence 99999999999999999987655 33444444443211
Q ss_pred eeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 509 KLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 509 ~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ .+.|.|.++..+|+|.|+|.|.|..|
T Consensus 313 -----~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~----------~~~L~i~~v~~~d~G~Y~C~a~N~~G 377 (388)
T 2v5m_A 313 -----DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRNDRE 377 (388)
T ss_dssp -----ESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred -----CCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC----------CCEEEEecCChhhCEEEEEEEEcCCC
Confidence 113567889999999999999999999999999988653 45899999999999999999999999
Q ss_pred CeEEEEEEEE
Q psy2776 589 STSLDLSLQV 598 (803)
Q Consensus 589 ~~s~s~~l~V 598 (803)
....++.|.|
T Consensus 378 ~~~~~~~l~V 387 (388)
T 2v5m_A 378 SAEASAELKL 387 (388)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEe
Confidence 9999999887
No 39
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=6.7e-32 Score=300.72 Aligned_cols=377 Identities=14% Similarity=0.141 Sum_probs=220.4
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eec------------------cceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLI------------------KGRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ...++... .+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (444)
T 1igt_B 7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL 86 (444)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence 3456788999999999998754 5689999863 211 01123322 23578999999
Q ss_pred CCCcceEEEEEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 205 SESSEGRYTCKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+.+|+|.|+|.+.|..+.. ...+.|.|......
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~-------------------------------------------- 122 (444)
T 1igt_B 87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTT-------------------------------------------- 122 (444)
T ss_dssp CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCB--------------------------------------------
T ss_pred CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCC--------------------------------------------
Confidence 9999999999999976542 12345666532100
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEEEcC
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIITSRG 358 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~~~~ 358 (803)
.+.+....+.. .+.+|+.+.|.|.+ + .|.+ .+.|++++..+...........
T Consensus 123 -----------------------~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~- 177 (444)
T 1igt_B 123 -----------------------APSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQS- 177 (444)
T ss_dssp -----------------------CCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEET-
T ss_pred -----------------------CCceeEecccc-cCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccC-
Confidence 00011011111 12569999999999 5 4776 9999999876421100000000
Q ss_pred ceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeE
Q psy2776 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438 (803)
Q Consensus 359 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 438 (803)
|.|.+ ...|+|.++..+| |.|
T Consensus 178 ---------------~~~~~-------------------------------------------~s~L~i~~~~~~d-g~Y 198 (444)
T 1igt_B 178 ---------------DLYTL-------------------------------------------SSSVTVTSSTWPS-QSI 198 (444)
T ss_dssp ---------------TEEEE-------------------------------------------EEEEEECSTTTTT-SCC
T ss_pred ---------------CcEEE-------------------------------------------EEEEEEchhhcCC-CeE
Confidence 22211 1247788888888 888
Q ss_pred EEEeeCCceeeeeecccCCCCceeEEeeeccC-cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc
Q psy2776 439 TCKATNEAGTAETRTMWPGLPLSIVVSLRKAD-TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517 (803)
Q Consensus 439 ~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 517 (803)
+|.|.|..+...... .+.+.... ..+.+.. -....+..+|. +.+ .++..
T Consensus 199 ~C~a~n~~~~~~~~~---------~i~~~~~~~~~~~~~~----------------~~~~~~~~~p~---v~~--~~p~~ 248 (444)
T 1igt_B 199 TCNVAHPASSTKVDK---------KIEPRGPTIKPCPPCK----------------CPAPNLLGGPS---VFI--FPPKI 248 (444)
T ss_dssp EEEEEETTTTEEEEE---------ECCCCCCSCCCCCCCS----------------CCCSCCCCCCE---EEE--ECCCH
T ss_pred EEEEEeCCCCcceEE---------EeccCCCCcccCCccc----------------cCCcccCCCce---EEe--cCCch
Confidence 888888877644321 11110000 0000000 00000111111 101 11111
Q ss_pred eE-EeecceeEEEEEEcCcC---C-CeeEEeeCCeeecCCCcEEEE-ecC----CeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 518 QR-LSVKSQWKVEVKYFGFP---R-PEISWMKNGAEITDSKACRIF-IDE----ETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 518 ~~-v~~g~~v~l~C~~~g~p---~-~~v~W~~~g~~i~~~~~~~~~-~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
.. +.+|+.+.|.|.+.|.| + +.+.|+|+|..+......... ... ..+.|.|.++..+|+|.|+|.|.|..
T Consensus 249 ~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 328 (444)
T 1igt_B 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD 328 (444)
T ss_dssp HHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred hheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCC
Confidence 22 47799999999999984 3 689999999887654221111 111 24689999999999999999999998
Q ss_pred CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 588 GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 588 g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
|.......+.+..
T Consensus 329 ~~~~~~~~v~~~~------------------------------------------------------------------- 341 (444)
T 1igt_B 329 LPAPIERTISKPK------------------------------------------------------------------- 341 (444)
T ss_dssp CSSCEEEEEECCC-------------------------------------------------------------------
T ss_pred CCCceEEEEeccC-------------------------------------------------------------------
Confidence 8763333332100
Q ss_pred CCCCCCeeEeccce-eEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE--EEeeCc---eEEEEEecCCCCC
Q psy2776 668 SPGQAPLFIERFEE-KTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EIFDGE---NIILELKEADSET 739 (803)
Q Consensus 668 ~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~--~~~~~~---~~~L~i~~v~~~~ 739 (803)
....+|.+...+.. ..+. ++.++|.|.+.|. |.+ .|.|+++|.++....... ...++. ...|.|... ..+
T Consensus 342 ~~~~~P~v~~~~~~~~~~~-~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~-~~~ 419 (444)
T 1igt_B 342 GSVRAPQVYVLPPPEEEMT-KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKK-NWV 419 (444)
T ss_dssp CCCBCCEEEEECCCGGGTT-SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH-HHH
T ss_pred CCCCCCEEEEeCCChHHcc-CCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChH-Hhc
Confidence 01125555443332 2233 4459999999995 665 899999999884321111 112232 234667766 456
Q ss_pred CceeEEEEEEccCcc
Q psy2776 740 DAGDYKVVATNELGS 754 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~ 754 (803)
|+|.|+|.|.|..-.
T Consensus 420 d~g~YtC~a~n~~l~ 434 (444)
T 1igt_B 420 ERNSYSCSVVHEGLH 434 (444)
T ss_dssp TCCCEEEEEECTTSG
T ss_pred CCCeEEEEEECCCcC
Confidence 799999999997643
No 40
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=278.92 Aligned_cols=266 Identities=22% Similarity=0.351 Sum_probs=197.0
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|. .+.|++ +|..+....++.+..++
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-------------------------------- 57 (291)
T 2wim_A 11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-------------------------------- 57 (291)
T ss_dssp CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET--------------------------------
T ss_pred ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC--------------------------------
Confidence 345567789999999999 6664 899999 67777665554443333
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 58 ------------------------------~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~------------------ 89 (291)
T 2wim_A 58 ------------------------------VRSRLTIYNANIEDAGIYRCQATDAKGQTQEA------------------ 89 (291)
T ss_dssp ------------------------------TEEEEEECSCCGGGCEEEEEEEECSSSCEEEE------------------
T ss_pred ------------------------------CEEEEEEccCCcccCEEEEEEEecccCceEEE------------------
Confidence 23458888888999999999999987765431
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus 90 -----------------------~~~l~v~~~~~~~~~------~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~ 140 (291)
T 2wim_A 90 -----------------------TVVLEIYQKLTFREV------VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140 (291)
T ss_dssp -----------------------EEEEEEECCCBCCSC------CCSEEEETTSCEEECCCCBCSSCCEEEEECC----C
T ss_pred -----------------------EEEEEecCCcceEeC------CCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccc
Confidence 334444444443221 134678899999999999999999999999998876
Q ss_pred CC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE--EEEEEEEeeeEeEeeecccccEEEeeeeCCccceE
Q psy2776 551 DS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS--LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQY 626 (803)
Q Consensus 551 ~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s--~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~ 626 (803)
.. .++.+. ....|.|.++..+|+|.|+|.|.|..+... ..+.|.|..
T Consensus 141 ~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-------------------------- 191 (291)
T 2wim_A 141 TISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-------------------------- 191 (291)
T ss_dssp BCCCSSEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB--------------------------
T ss_pred ccCCceEEEc---cCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc--------------------------
Confidence 53 333322 234799999999999999999999876543 344455543
Q ss_pred EEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccc--eeEEecCCeEEEEEEEeecCCCce
Q psy2776 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFE--EKTVKEKGTIRLMAKVKASPAPSI 704 (803)
Q Consensus 627 ~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v 704 (803)
+|.+..... ...+.+|+.+.|.|.+.|.|.|.+
T Consensus 192 ---------------------------------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v 226 (291)
T 2wim_A 192 ---------------------------------------------PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 226 (291)
T ss_dssp ---------------------------------------------CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred ---------------------------------------------CCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence 333332222 346778999999999999999999
Q ss_pred EEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 705 ~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|+++|..+..+.++.+.. ....|.|.++ ..+|+|.|+|.|.|.+|.++.++.|.|..
T Consensus 227 ~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~ 284 (291)
T 2wim_A 227 SWFRNGKLIEENEKYILKG--SNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFV 284 (291)
T ss_dssp EEEETTEECCCTTTEEECS--TTCEEEEESC-CSTTCEEEEEEEEETTEEEEEEEEEEC--
T ss_pred EEEECCEECcCCccEEEcC--CccEEEEeeC-CcccCEEEEEEEEECCCceeeeEEEEEEE
Confidence 9999999998887765543 3458999999 78999999999999999999999999964
No 41
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=281.98 Aligned_cols=283 Identities=20% Similarity=0.343 Sum_probs=199.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEE---ec-CeeEEEEecCCC-CcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY---EN-NVARFTVVNCSE-SSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~~-~~~~L~i~~v~~-~d~G~Y~C~a 216 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+...+... .. ....|.|.+++. +|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 468889888999999999999999999999999999999998876544332 22 347899999998 9999999999
Q ss_pred EcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 217 TNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.|..|....++.|.|...+..+..
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~p~~-------------------------------------------------------- 107 (304)
T 2yd9_A 84 QNSVGEITVHAKLTVLREDQLPSG-------------------------------------------------------- 107 (304)
T ss_dssp ECSSCEECCEEEEEEECGGGCCTT--------------------------------------------------------
T ss_pred ECCCCeEEEEEEEEEeccccCCCC--------------------------------------------------------
Confidence 999998888888888766321110
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeecccccee-EEEEcCceeEEEEeecCCCCCc
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARH-IITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~-~~~~~~~~~~l~i~~~~~~d~g 374 (803)
...+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+...... .+..
T Consensus 108 ---------~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~------------------ 160 (304)
T 2yd9_A 108 ---------FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ------------------ 160 (304)
T ss_dssp ---------CCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE------------------
T ss_pred ---------CCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe------------------
Confidence 0011112334556679999999999 8999999999999888653210 0000
Q ss_pred cEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecc
Q psy2776 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454 (803)
Q Consensus 375 ~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~ 454 (803)
.....|.|.+++.+|+|.|+|.|.|..|......
T Consensus 161 ---------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~- 194 (304)
T 2yd9_A 161 ---------------------------------------------LRSGALQIESSEETDQGKYECVATNSAGVRYSSP- 194 (304)
T ss_dssp ---------------------------------------------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCC-
T ss_pred ---------------------------------------------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEecc-
Confidence 0111488999999999999999999988766421
Q ss_pred cCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 455 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
..|.|...+..|.+.. .+....+.+|+.+.|.|.+.|
T Consensus 195 ----------------------------------------~~l~v~~~~~~P~~~~---~~~~~~v~~G~~v~l~C~~~g 231 (304)
T 2yd9_A 195 ----------------------------------------ANLYVRVQNVAPRFSI---LPMSHEIMPGGNVNITCVAVG 231 (304)
T ss_dssp ----------------------------------------EEEEEECCCEEEEEEE---CCCCBCCCTTCCEEEEEEEEE
T ss_pred ----------------------------------------EEEEEEeeccCCcEEe---cCCceEEcCCCeEEEEEEEee
Confidence 1222211111111111 112355788999999999999
Q ss_pred cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 535 FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 535 ~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|.|.+.|+++|..+....+.. .+...|.|.++ +|+|.|+|.|.|..|..+.++.|.|...+
T Consensus 232 ~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 293 (304)
T 2yd9_A 232 SPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293 (304)
T ss_dssp ESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred eCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence 9999999999999987664321 23456777766 69999999999999999999999998866
No 42
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.98 E-value=2.1e-31 Score=297.78 Aligned_cols=375 Identities=16% Similarity=0.207 Sum_probs=216.6
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c---------------cceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I---------------KGRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|+. .. + ...++... ++..+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence 3456788999999999998765 6789999842 11 1 01222221 24568999999
Q ss_pred CCCcceEEEEEEEcCCc------------CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEE
Q psy2776 205 SESSEGRYTCKATNEAG------------TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALN 272 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g------------~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (803)
+.+|+|.|+|.+.|..| .....+.|.|...+..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~----------------------------------- 131 (457)
T 1hzh_H 87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTK----------------------------------- 131 (457)
T ss_dssp CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCB-----------------------------------
T ss_pred CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCC-----------------------------------
Confidence 99999999999999875 1223456666542100
Q ss_pred EeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-eeeEEeecCeecccc
Q psy2776 273 VKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-IQVKWLKKGKEIKES 349 (803)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~~i~W~~~g~~l~~~ 349 (803)
.+.+....+. ..+.+|+.+.|.|.+ +. |. +.+.|++++..+...
T Consensus 132 --------------------------------~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~ 178 (457)
T 1hzh_H 132 --------------------------------GPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH 178 (457)
T ss_dssp --------------------------------CCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEE
T ss_pred --------------------------------CCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccce
Confidence 0001111111 123569999999999 54 64 899999998765321
Q ss_pred ceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEe
Q psy2776 350 ARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVN 429 (803)
Q Consensus 350 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 429 (803)
...... ...|.|. ....|.|.+
T Consensus 179 ~~~~~~---------------~~~~~~~-------------------------------------------~~s~L~i~~ 200 (457)
T 1hzh_H 179 TFPAVL---------------QSSGLYS-------------------------------------------LSSVVTVPS 200 (457)
T ss_dssp EEEEEE---------------CTTSCEE-------------------------------------------EEEEEEECS
T ss_pred EcCceE---------------CCCCCEE-------------------------------------------EEEEEEecc
Confidence 100000 0111111 013588888
Q ss_pred ccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCC---Cc
Q psy2776 430 CSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ---QP 506 (803)
Q Consensus 430 ~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~---~~ 506 (803)
+..+| |.|+|.|.|..+...... .+.+..... .+.+.+...+. .|
T Consensus 201 ~~~~d-G~Y~C~a~n~~~~~~~~~---------~v~~~~~~~----------------------~~~~~~~~~~~~~~~p 248 (457)
T 1hzh_H 201 SSLGT-QTYICNVNHKPSNTKVDK---------KAEPKSCDK----------------------THTCPPCPAPELLGGP 248 (457)
T ss_dssp GGGGT-SCCEEEEEEGGGTEEEEE---------ECCCCCSCS----------------------SCSCCSCCCCCCSSSC
T ss_pred cccCC-ceEEEEEEeCCCCcceeE---------EecccCCCc----------------------ccccCCCCCccccCCc
Confidence 99888 999999999776544321 111110000 00000000000 01
Q ss_pred cceeeeccccce-EEeecceeEEEEEEcCcCCC----eeEEeeCCeeecCCCcEEEEecCCeEEEEEee---eccCc---
Q psy2776 507 AIKLVDSNLKSQ-RLSVKSQWKVEVKYFGFPRP----EISWMKNGAEITDSKACRIFIDEETSTIAIYS---VVRAD--- 575 (803)
Q Consensus 507 ~~~~~~~~~~~~-~v~~g~~v~l~C~~~g~p~~----~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~---v~~~d--- 575 (803)
.+.+ ..+... .+.+|+.+.|.|.+.|.|++ .+.|+|+|..+........... ..+.|.|.. +...|
T Consensus 249 ~v~~--~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~-~~g~~~~~~~l~i~~~d~~d 325 (457)
T 1hzh_H 249 SVFL--FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-YNSTYRVVSVLTVLHQDWLN 325 (457)
T ss_dssp EEEE--ECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEEC-TTSCEEEEEEECCCHHHHHH
T ss_pred eEEe--ECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceec-CCCcEEEEEEEEECHHHccC
Confidence 1111 111111 25679999999999998653 8999999998865422221111 112233332 23444
Q ss_pred CeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
+|.|+|.|.|..+....+..+.+..
T Consensus 326 ~G~Y~C~a~n~~~~~~~~~~v~~~~------------------------------------------------------- 350 (457)
T 1hzh_H 326 GKEYKCKVSNKALPAPIEKTISKAK------------------------------------------------------- 350 (457)
T ss_dssp TCCEEEEEECTTSSSCEEEEECCCC-------------------------------------------------------
T ss_pred CCcEEEEEeCCCCCCcceEEEEccc-------------------------------------------------------
Confidence 9999999998766544333332100
Q ss_pred eeeeeeecccCCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEE--EeeCc---e
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKRE--IFDGE---N 727 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~--~~~~~---~ 727 (803)
....+|.+...+.. ..+..|+ +.|.|.+.|.|++ .|.|+++|.++........ ..++. .
T Consensus 351 ------------~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~ 417 (457)
T 1hzh_H 351 ------------GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY 417 (457)
T ss_dssp ------------CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEE
T ss_pred ------------CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEE
Confidence 01125555444332 2344455 9999999997554 8999999999864322111 12232 2
Q ss_pred EEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 728 IILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..|.|... ..+|+|.|+|.|.|.....
T Consensus 418 s~l~i~~~-~~~~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 418 SKLTVDKS-RWQQGNVFSCSVMHEALHN 444 (457)
T ss_dssp EEEEEEHH-HHHTTCCEEEEEECTTSGG
T ss_pred EEEEEChH-HccCCCeEEEEEEECCCCC
Confidence 34666665 3478999999999986554
No 43
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.98 E-value=3.9e-31 Score=276.67 Aligned_cols=269 Identities=18% Similarity=0.303 Sum_probs=198.4
Q ss_pred CceeeeccccceeEEEEe-cCC-ceeeEEee-cCeecccc-ceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSP-DIQVKWLK-KGKEIKES-ARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~-~g~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
|....+.+|+.+.|.|.+ +.| .+.+.|++ +|..+... .++.+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~-------------------------------- 56 (291)
T 1qz1_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-------------------------------- 56 (291)
T ss_dssp SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEE--------------------------------
T ss_pred CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEE--------------------------------
Confidence 444556779999999999 655 69999999 78777632 1221111
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
...+...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 57 -----------------------------~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~---------------- 91 (291)
T 1qz1_A 57 -----------------------------NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA---------------- 91 (291)
T ss_dssp -----------------------------EETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE----------------
T ss_pred -----------------------------cCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEE----------------
Confidence 11244579999999999999999999988643321
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.|..+|.+. ..+....+.+|+.+.|.|.+.|.|.+.+.|+++|..
T Consensus 92 -------------------------~~~l~v~~~~~~~------~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~ 140 (291)
T 1qz1_A 92 -------------------------TVNVKIFQKLMFK------NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140 (291)
T ss_dssp -------------------------EEEEEEECCSEEE------ECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSC
T ss_pred -------------------------EEEEEeecccccc------CCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEE
Confidence 3444444444321 112356788999999999999999999999999988
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQY 626 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~ 626 (803)
+......++... .+..|.|.++..+|+|.|+|.|.|..+.. ...+.|.|..+|
T Consensus 141 ~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p------------------------ 195 (291)
T 1qz1_A 141 VILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPP------------------------ 195 (291)
T ss_dssp SSTTCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEE------------------------
T ss_pred cccCCCceEEEc-cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCC------------------------
Confidence 765433222222 23579999999999999999999976443 345566665533
Q ss_pred EEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEec--cceeEEecCCeEEEEEEEeecCCCce
Q psy2776 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIER--FEEKTVKEKGTIRLMAKVKASPAPSI 704 (803)
Q Consensus 627 ~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~v~~g~~v~L~C~~~g~p~~~v 704 (803)
.+... +....+.+|+.+.|.|.+.|.|.|.+
T Consensus 196 -----------------------------------------------~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i 228 (291)
T 1qz1_A 196 -----------------------------------------------TVQARQSIVNATANLGQSVTLVCDADGFPEPTM 228 (291)
T ss_dssp -----------------------------------------------EEEESCSEEEEETTSCCCEEEEEEEEEESCCEE
T ss_pred -----------------------------------------------cccccccccccccccCceEEEEEEEEEeCCCcE
Confidence 23222 22456788999999999999999999
Q ss_pred EEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 705 VWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 705 ~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|+++|.++..+. ++.. ......|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 229 ~W~~~g~~~~~~~~~~~~~~~--~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 229 SWTKDGEPIENEEEDDEKHIF--SDDSSELTIRNV-DKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp EEEETTEECCCC--CCSSEEE--CTTSCEEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEECCEECcCCCCCCcceEE--cCCCcEEEEEec-ChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 9999999987664 3332 334458999999 7899999999999999999999999885
No 44
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.98 E-value=6.9e-31 Score=277.71 Aligned_cols=295 Identities=20% Similarity=0.274 Sum_probs=204.1
Q ss_pred eeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 315 VTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
...+.+|+.+.|.|.. +.|.+.+.|+|+|.++..+.++.+...+
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~---------------------------------- 55 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG---------------------------------- 55 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET----------------------------------
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC----------------------------------
Confidence 4566789999999887 5899999999999999876665554443
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
+...|.|.+++.+|+|.|+|.|.|..|.... . .+.+....
T Consensus 56 ----------------------------~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s-~---------~l~v~~~~-- 95 (312)
T 2y23_A 56 ----------------------------NKTKMTFKDLGMDDLGIYSCDVTDTDGIASS-Y---------LIDEEELK-- 95 (312)
T ss_dssp ----------------------------TEEEEEESSCCGGGCEEEEEEESSSCCCCEE-E---------EECHHHHH--
T ss_pred ----------------------------CEEEEEECcCCccCCEEEEEEEEeCCCcEEE-E---------EEEEeeee--
Confidence 2345778888889999999999998774432 1 11111000
Q ss_pred cCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITD 551 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~ 551 (803)
.+..+ . ....+|.+.... .....+.+|+.+.|.|.+. +.|.+.+.|+++|..+..
T Consensus 96 -------~~~~~-----------~-~~~~~p~~~~~~-----~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~ 151 (312)
T 2y23_A 96 -------RLLAL-----------S-HEHKFPTVPVKS-----ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE 151 (312)
T ss_dssp -------HHHHH-----------H-HHHHSCBCCEEE-----EEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECS
T ss_pred -------eeecc-----------c-ccCCCCcccccc-----CCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECee
Confidence 00000 0 000133322211 1256788999999999999 899999999999999998
Q ss_pred CCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 552 SKACRIFID--EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 552 ~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
+.++.+... .+...|.|.++..+|+|.|+|.|.|..+.. ...+.+....
T Consensus 152 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~--------------------------- 202 (312)
T 2y23_A 152 GPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDV--------------------------- 202 (312)
T ss_dssp SSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHH---------------------------
T ss_pred CCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE--EEEEEEcchh---------------------------
Confidence 877776654 455789999999999999999998754443 3333332100
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeee-ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEe
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALA-THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWF 707 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~ 707 (803)
....+... ..........+|.|...+. ..+.+|+.+.|.|.+.|.|.| .+.|+
T Consensus 203 ------------------------~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~ 257 (312)
T 2y23_A 203 ------------------------FKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWY 257 (312)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEEEEEEESCCSSCEEEEE
T ss_pred ------------------------hhhhcccccccccchhhccCCceeecce-EEEeCCCEEEEEEEEcCCCCCCEEEEe
Confidence 00000000 0000000012576765544 778999999999999999998 99999
Q ss_pred eCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 708 RNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 708 ~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
++|.++..+.++.+. +....|.|.++ +.+|+|.|+|.|.|.+|.++.++.|+|+
T Consensus 258 ~~g~~~~~~~~~~~~--~~~~~L~I~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 258 KDEREISVDEKHDFK--DGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp ETTEEEEEECCC------CEEEEEECSC-SGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred eCCEECCCCCcEEEE--CCEEEEEECcC-CHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 999999876666554 44579999999 7999999999999999999999998874
No 45
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=282.76 Aligned_cols=298 Identities=18% Similarity=0.311 Sum_probs=205.9
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..+|.|..+. +..+.+|+.+.|.|.+.+. |.+.+.|+|++..+.. .++....+...|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 83 (317)
T 2y25_A 5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83 (317)
T ss_dssp SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence 4577787544 5889999999999999886 7789999999988863 34445556689999999999999999999999
Q ss_pred CcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeec
Q psy2776 220 AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFE 299 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (803)
.|....++.|.|...+.
T Consensus 84 ~g~~~~~~~l~v~~~~~--------------------------------------------------------------- 100 (317)
T 2y25_A 84 RGKDKSRLKLVDEAFKE--------------------------------------------------------------- 100 (317)
T ss_dssp SCEEEEEECCSTHHHHH---------------------------------------------------------------
T ss_pred CCcEEEEEEEEEecCcc---------------------------------------------------------------
Confidence 88766555554443210
Q ss_pred cCCCccccccccCCceeeeccccceeEEEEe-c----------CCceeeEEeecCeeccccceeEEEEcCceeEEEEeec
Q psy2776 300 SKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S----------SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~----------~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 368 (803)
+.. .+....+..|+.+.|.|.+ + .|.+.+.|+++|..+..+.+..+...+
T Consensus 101 --------~~~-~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---------- 161 (317)
T 2y25_A 101 --------LMM-EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG---------- 161 (317)
T ss_dssp --------HHH-HHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS----------
T ss_pred --------ccc-cCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC----------
Confidence 000 0011122335555555554 3 789999999999988866554443332
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
+...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 162 ----------------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 189 (317)
T 2y25_A 162 ----------------------------------------------------EQIWLQINEPTPNDKGKYVMELFDGKTG 189 (317)
T ss_dssp ----------------------------------------------------SEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred ----------------------------------------------------CEEEEEECcCCcccCeeEEEEEEeCCce
Confidence 3345888889999999999999998887
Q ss_pred eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEE
Q psy2776 449 AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKV 528 (803)
Q Consensus 449 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l 528 (803)
...+. .+.+.... .....++.+. ...+....+| .+.........+.+|+.+.|
T Consensus 190 ~~~~~---------~l~v~~~~-----~~~~~~~~~~--------~~~~~~~~~p-----~~~~~~~~~~~v~~g~~~~l 242 (317)
T 2y25_A 190 HQKTV---------DLSGQAYD-----EAYAEFQRLK--------QAAIAEKNRA-----RVLGGLPDVVTIQEGKALNL 242 (317)
T ss_dssp EEEEE---------EECHHHHH-----HHHHHHHHHH--------HHHHHTTTSC-----EEEEBCCSEEEEETTSBBCE
T ss_pred EEEEE---------EEeeeecc-----ccchhhcccC--------CcccCcCCCC-----cccccCCccEEEEcCCEEEE
Confidence 76632 12111000 0000000000 0000000111 12222223567899999999
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
.|.+.|.|.|.+.|+++|..+..+.++.+... +....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 243 ~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp EEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 99999999999999999999988887777655 55679999999999999999999999999999999998754
No 46
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.97 E-value=3.6e-31 Score=276.90 Aligned_cols=278 Identities=20% Similarity=0.355 Sum_probs=200.8
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccC-CCeeEEEE-cCeeccc--eeEEE---ecCeeEEEEecCCCCcceEEEEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVP-TPDIKWYK-DDSLIKG--RNITY---ENNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p-~p~i~W~~-~~~~~~~--~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
++.+...+.+..+.+|+.+.|.|.+.+.| .+.+.|++ ++..+.. .++.. ......|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 56677788889999999999999999876 68999999 7766653 22222 345679999999999999999999
Q ss_pred EcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceee
Q psy2776 217 TNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWF 295 (803)
Q Consensus 217 ~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (803)
.|..|.. ...+.|.|...+.
T Consensus 82 ~n~~g~~~~~~~~l~v~~~~~----------------------------------------------------------- 102 (291)
T 1qz1_A 82 TAEDGTQSEATVNVKIFQKLM----------------------------------------------------------- 102 (291)
T ss_dssp ECTTSCEEEEEEEEEEECCSE-----------------------------------------------------------
T ss_pred EcCCCCeeEEEEEEEeecccc-----------------------------------------------------------
Confidence 9998643 3455666654320
Q ss_pred eeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCc
Q psy2776 296 WWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g 374 (803)
+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+...........
T Consensus 103 -------------~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----------------- 152 (291)
T 1qz1_A 103 -------------FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----------------- 152 (291)
T ss_dssp -------------EEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC-----------------
T ss_pred -------------ccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc-----------------
Confidence 0011223445679999999999 889999999999988754321111000
Q ss_pred cEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecc
Q psy2776 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454 (803)
Q Consensus 375 ~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~ 454 (803)
....|.|.+++.+|+|.|+|.|.|..+......
T Consensus 153 ----------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~- 185 (291)
T 1qz1_A 153 ----------------------------------------------SNNYLQIRGIKKTDEGTYRCEGRILARGEINFK- 185 (291)
T ss_dssp ----------------------------------------------TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE-
T ss_pred ----------------------------------------------cCCcEEEccCccccCeEEEEEEEecCCCceeeE-
Confidence 011388888999999999999998764333211
Q ss_pred cCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 455 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.+.+..+|.+... .......+.+|+.+.|.|.+.|
T Consensus 186 ---------------------------------------~~~l~v~~~p~~~~~----~~~~~~~~~~g~~v~l~C~~~g 222 (291)
T 1qz1_A 186 ---------------------------------------DIQVIVNVPPTVQAR----QSIVNATANLGQSVTLVCDADG 222 (291)
T ss_dssp ---------------------------------------EEEEEEEEEEEEEES----CSEEEEETTSCCCEEEEEEEEE
T ss_pred ---------------------------------------EEEEEEecCCccccc----ccccccccccCceEEEEEEEEE
Confidence 233334344432111 1112345678999999999999
Q ss_pred cCCCeeEEeeCCeeecCCCc--EEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 535 FPRPEISWMKNGAEITDSKA--CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 535 ~p~~~v~W~~~g~~i~~~~~--~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.|.+.|+++|..+....+ .++....++..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 223 ~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 223 FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp ESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 99999999999999877641 2333344567999999999999999999999999999999999864
No 47
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.97 E-value=1.4e-32 Score=305.30 Aligned_cols=373 Identities=15% Similarity=0.171 Sum_probs=223.5
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+..+.+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. ..++... ++..+|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 3456788999999999998753 6789999963 2110 1233322 23458999999
Q ss_pred CCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 205 SESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
+.+|+|.|+|.+.|..+.....+.|.|...+..
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~----------------------------------------------- 118 (434)
T 1igy_B 86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTT----------------------------------------------- 118 (434)
T ss_dssp CGGGCSEECCCCSSSSCCCCCCEECEECCSCCB-----------------------------------------------
T ss_pred ChHHCEEEEEEEEccccccCCceEEEEccCCCC-----------------------------------------------
Confidence 999999999999986544444556666532100
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cce-eeEEeecCeeccccceeEEEEcCcee
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PDI-QVKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
. +.+....+.. .+.+|+.+.|.|.+ +. |.+ .+.|+|++..+... ...
T Consensus 119 ------------------~--P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~------~~~--- 168 (434)
T 1igy_B 119 ------------------P--PSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH------TFP--- 168 (434)
T ss_dssp ------------------C--CCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE------ECC---
T ss_pred ------------------C--CeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE------ecC---
Confidence 0 0011011111 23569999999999 54 766 99999998753210 000
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
... +.|.|.+. ..|+|.++..+| |.|+|.
T Consensus 169 -----~~~--~~~~~~~~-------------------------------------------s~L~i~~~~~~d-g~Y~C~ 197 (434)
T 1igy_B 169 -----AVL--QSDLYTLS-------------------------------------------SSVTVPSSPRPS-ETVTCN 197 (434)
T ss_dssp -----CEE--CSSCEEEE-------------------------------------------EEEEEETTTTTS-SCCEEE
T ss_pred -----cee--cCCcEEEE-------------------------------------------EEEEEcchhcCC-CcEEEE
Confidence 000 01333322 248899999888 999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceE-E
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR-L 520 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~-v 520 (803)
|.|..+...... .+.+...... +.....+..|.+.+. ++.... +
T Consensus 198 a~n~~~~~~~~~---------~~~~~~~~~~------------------------v~~~~~~~~p~v~~~--~p~~~~~v 242 (434)
T 1igy_B 198 VAHPASSTKVDK---------KIVPRDCGCK------------------------PCICTVPEVSSVFIF--PPKPKDTL 242 (434)
T ss_dssp EECTTTTCCEEE---------ECCCCCCCCC------------------------CCCCCCSSSCCEEEE--CCCHHHHH
T ss_pred EEeCCCCcccee---------eccCCCCCCc------------------------cccCCCCcCcEEEEe--CCChHHhc
Confidence 999887644321 0111000000 000000111111111 111111 6
Q ss_pred eecceeEEEEEEcCcC----CCeeEEeeCCeeecCCCcEEEE-ec----CCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 521 SVKSQWKVEVKYFGFP----RPEISWMKNGAEITDSKACRIF-ID----EETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p----~~~v~W~~~g~~i~~~~~~~~~-~~----~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.+|+.+.|.|.+.|.+ .+.+.|+|+|..+......... .. ...+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 243 ~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 322 (434)
T 1igy_B 243 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAP 322 (434)
T ss_dssp STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSC
T ss_pred ccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCc
Confidence 7899999999999984 3589999999877543211111 01 1235799999999999999999999988642
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
....+.+.. ....
T Consensus 323 ~~~~v~~~~-------------------------------------------------------------------~~~~ 335 (434)
T 1igy_B 323 IEKTISKTK-------------------------------------------------------------------GKPR 335 (434)
T ss_dssp CCCCCCCCC-------------------------------------------------------------------SCCB
T ss_pred eeEEEeccC-------------------------------------------------------------------CCCc
Confidence 221211100 0112
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEE--EeeCc---eEEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKRE--IFDGE---NIILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~--~~~~~---~~~L~i~~v~~~~D~G~Y 744 (803)
+|.+...+.......|+.++|.|.+.|. |+ +.|.|+|+|.++........ ..++. ...|.|... ..+|+|.|
T Consensus 336 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~-~~~~~g~Y 414 (434)
T 1igy_B 336 APQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKS-NWEAGNTF 414 (434)
T ss_dssp CCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHH-HHHTTCCE
T ss_pred CCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECch-hccCCCEE
Confidence 5555444433333457789999999996 43 38999999998853221111 11222 245777776 45789999
Q ss_pred EEEEEccCcc
Q psy2776 745 KVVATNELGS 754 (803)
Q Consensus 745 ~C~a~N~~G~ 754 (803)
+|.|.|....
T Consensus 415 tC~a~n~~l~ 424 (434)
T 1igy_B 415 TCSVLHEGLH 424 (434)
T ss_dssp EEEEEETTSG
T ss_pred EEEEEcCCCC
Confidence 9999998654
No 48
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.97 E-value=2e-29 Score=283.19 Aligned_cols=381 Identities=12% Similarity=0.139 Sum_probs=221.8
Q ss_pred cCcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEec
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVN 203 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~ 203 (803)
.+....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ..++... ++..+|.|.+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (475)
T 1iga_A 7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (475)
T ss_pred cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence 35667888999999999998754 5679999853 1110 1222222 2346899999
Q ss_pred CCCCcceEEEEEEEcCCcC------eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecc
Q psy2776 204 CSESSEGRYTCKATNEAGT------AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~------~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (803)
++.+|+|.|.|.+.|..|. ....+.|.|...+. .
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~--~-------------------------------------- 126 (475)
T 1iga_A 87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASP--T-------------------------------------- 126 (475)
T ss_pred CChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCC--c--------------------------------------
Confidence 9999999999999998762 11234565553210 0
Q ss_pred ccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-e-eeEEeecCeeccccceeE
Q psy2776 278 KLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-I-QVKWLKKGKEIKESARHI 353 (803)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~-~i~W~~~g~~l~~~~~~~ 353 (803)
. +.+....+. . ..+|+.+.|.|.+ +. |. + .+.|++++.........
T Consensus 127 -------------------------~--P~i~~~~~~-~-~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~- 176 (475)
T 1iga_A 127 -------------------------S--PKVFPLSLC-S-TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFP- 176 (475)
T ss_pred -------------------------C--CeEEecCcc-c-cCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCC-
Confidence 0 000000011 1 1469999999999 54 65 4 99999987432110000
Q ss_pred EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCC
Q psy2776 354 ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433 (803)
Q Consensus 354 ~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 433 (803)
.+.....|.|.. ...|+|.++..+
T Consensus 177 -------------~~~~~~~g~~~~-------------------------------------------~s~L~i~~~~~~ 200 (475)
T 1iga_A 177 -------------PSQDASGDLYTT-------------------------------------------SSQLTLPATQCL 200 (475)
T ss_pred -------------ceecCCCCcEEE-------------------------------------------EEEEEechhHcC
Confidence 000011122211 124788888888
Q ss_pred CceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeec
Q psy2776 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513 (803)
Q Consensus 434 d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 513 (803)
|.|.|+|.|.|..+..... .+.+.+........... +. -....+ .+|. +...
T Consensus 201 d~g~Y~C~a~n~~~~~~~~--------~v~l~V~~~~~~~~~~~----~~----------~~~~~~-~~p~-----v~~~ 252 (475)
T 1iga_A 201 AGKSVTCHVKHYTNPSQDV--------TVPCPVPSTPPTPSPST----PP----------TPSPSC-CHPR-----LSLH 252 (475)
T ss_pred CCceEEEEEEECCCCceee--------eEecccccCcccccccc----cc----------cCCCCC-CCcE-----EEEc
Confidence 9999999999987632111 11111111000000000 00 000000 1111 1111
Q ss_pred cccceEEeecceeEEEEEEcCcCC---CeeEEeeCCeeecCCCcEE-EEe-c---CCeEEEEEeeeccCcCeEEEEEEEc
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPR---PEISWMKNGAEITDSKACR-IFI-D---EETSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~---~~v~W~~~g~~i~~~~~~~-~~~-~---~~~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
.+....+.+|+.+.|.|.+.|.++ +.+.| ++..+....... ... . ...+.|.|.++..+|+|.|+|.|.|
T Consensus 253 ~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n 330 (475)
T 1iga_A 253 RPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY 330 (475)
T ss_pred CCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEc
Confidence 111233578999999999998755 68999 444443221111 111 0 1246799999999999999999999
Q ss_pred CCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeeccc
Q psy2776 586 AAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHAT 665 (803)
Q Consensus 586 ~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~ 665 (803)
..|.......|.+..
T Consensus 331 ~~~~~~~~~~v~~~~----------------------------------------------------------------- 345 (475)
T 1iga_A 331 PESKTPLTATLSKSG----------------------------------------------------------------- 345 (475)
T ss_pred CCCCCceEEEeecCC-----------------------------------------------------------------
Confidence 988765444443211
Q ss_pred CCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecCC--CceEEeeCCeeccCCCCe----EEE---eeCc---eEEEEE
Q psy2776 666 LGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASPA--PSIVWFRNNKPLLSSPKK----REI---FDGE---NIILEL 732 (803)
Q Consensus 666 ~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~~~l~~~~~~----~~~---~~~~---~~~L~i 732 (803)
...+|.+...+.. ..+.+|+.+.|.|.+.|.++ +.|.|+|||.++..+... ... .++. ...|.|
T Consensus 346 ---~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i 422 (475)
T 1iga_A 346 ---NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV 422 (475)
T ss_pred ---CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEE
Confidence 0114555433332 34678999999999999733 489999999998765311 111 1222 245777
Q ss_pred ecCCCCCCceeEEEEEEccCcce
Q psy2776 733 KEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
... ..+|+|.|+|.|.|.....
T Consensus 423 ~~~-~~~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 423 AAE-DWKKGDTFSCMVGHEALPL 444 (475)
T ss_pred ChH-HhcCCCEEEEEEEcCCCCC
Confidence 776 4678999999999987653
No 49
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=272.16 Aligned_cols=276 Identities=22% Similarity=0.362 Sum_probs=199.5
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEE-cCeeccc-ee--EEEecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK-DDSLIKG-RN--ITYENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~-~~~~~~~-~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.+|.+...+.+..+.+|+.+.|.|.+.+.|. .+.|++ ++..+.. .+ +...+....|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 4678888888899999999999999998775 899999 6665542 22 33344567899999999999999999999
Q ss_pred CCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 219 EAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 219 ~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
..|... ..+.|.|...+.
T Consensus 82 ~~g~~~~~~~~l~v~~~~~------------------------------------------------------------- 100 (291)
T 2wim_A 82 AKGQTQEATVVLEIYQKLT------------------------------------------------------------- 100 (291)
T ss_dssp SSSCEEEEEEEEEEECCCB-------------------------------------------------------------
T ss_pred ccCceEEEEEEEEecCCcc-------------------------------------------------------------
Confidence 988763 345565554421
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc--eeEEEEcCceeEEEEeecCCCCCc
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDET 374 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~g 374 (803)
+ ...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+.... ++.+..
T Consensus 101 ----------~-~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~------------------ 151 (291)
T 2wim_A 101 ----------F-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA------------------ 151 (291)
T ss_dssp ----------C-CSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECT------------------
T ss_pred ----------e-EeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEcc------------------
Confidence 0 111223345679999999999 78999999999987765321 111111
Q ss_pred cEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecc
Q psy2776 375 DIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTM 454 (803)
Q Consensus 375 ~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~ 454 (803)
...|.|.+++.+|+|.|+|.+.+..+......
T Consensus 152 -----------------------------------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~- 183 (291)
T 2wim_A 152 -----------------------------------------------NNNLQILNINKSDEGIYRCEGRVEARGEIDFR- 183 (291)
T ss_dssp -----------------------------------------------TSCEEETTCCGGGCEEEEEEEEETTTTEEEEE-
T ss_pred -----------------------------------------------CCCEEEEecchhhCEEEEEEEEECCCCeeEEe-
Confidence 11388888999999999999998764433211
Q ss_pred cCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 455 WPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 455 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.+.+..+|.+.... ......+.+|+.+.|.|.+.|
T Consensus 184 ---------------------------------------~~~~~v~~~p~~~~~~----~~~~~~~~~g~~~~l~C~~~g 220 (291)
T 2wim_A 184 ---------------------------------------DIIVIVNVPPAISMPQ----KSFNATAERGEEMTFSCRASG 220 (291)
T ss_dssp ---------------------------------------EEEEEEEBCCCCBCSC----SEEECCSSSCCEEEEECBCCC
T ss_pred ---------------------------------------eEEEEeccCCccccCc----ccccceecCCCeEEEEEEeec
Confidence 3344444555432211 001234678999999999999
Q ss_pred cCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 535 FPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 535 ~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|.|.+.|+++|..+..+.++.+. ..+..|.|.++..+|+|.|+|.|.|..|....++.|.|..++
T Consensus 221 ~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 221 SPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp BSCCEEEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred CCCCeEEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 999999999999999887766543 345789999999999999999999999999999999998875
No 50
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.97 E-value=2.8e-30 Score=279.53 Aligned_cols=287 Identities=14% Similarity=0.150 Sum_probs=200.7
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIK 177 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~ 177 (803)
...|.|.+++.+|+|.|+|.+.+..+. ..+.+.. +...+ ...+.+|+.+.|.|.+.+.|.|.+.
T Consensus 66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~------~~l~V~~---------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~ 129 (363)
T 1wio_A 66 NFPLIIKNLKIEDSDTYICEVEDQKEE------VQLLVFG---------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQ 129 (363)
T ss_dssp CCCEEECSCCGGGCEEEEEEETTEEEE------EEEEEEE---------EEESS-CSSEESBSCEEEEEECCTTCCCCEE
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCCc------EEEEEEe---------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEE
Confidence 557999999999999999999887531 1222211 11122 2357799999999999999999999
Q ss_pred EEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEee
Q psy2776 178 WYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKR 257 (803)
Q Consensus 178 W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (803)
|++++..+ ......|.|.+++.+|+|.|+|.|.|..+....++.|.|...+.
T Consensus 130 W~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~--------------------- 181 (363)
T 1wio_A 130 CRSPRGKN-------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK--------------------- 181 (363)
T ss_dssp EECSSSCE-------EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC---------------------
T ss_pred EEcCCCcc-------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC---------------------
Confidence 99987543 12346899999999999999999999876666566666654321
Q ss_pred eccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-----
Q psy2776 258 VTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S----- 331 (803)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~----- 331 (803)
.+....+.+|+.+.|.|.+ +
T Consensus 182 ------------------------------------------------------~~~~~~~~~G~~v~l~C~~~~~~~~~ 207 (363)
T 1wio_A 182 ------------------------------------------------------ASSIVYKKEGEQVEFSFPLAFTVEKL 207 (363)
T ss_dssp ------------------------------------------------------SEEEEEEETBCCEEEECCCCCCCCSS
T ss_pred ------------------------------------------------------CCCceEEecCCEEEEEEEEecccccC
Confidence 0122345579999999988 5
Q ss_pred CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCccee
Q psy2776 332 SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLI 411 (803)
Q Consensus 332 ~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (803)
.|.+.+.|+++|..+..... .+...+.. +.+.....+
T Consensus 208 ~P~p~i~W~~~g~~~~~~~~-~~~~~~~~--~~~~~~~~~---------------------------------------- 244 (363)
T 1wio_A 208 TGSGELWWQAERASSSKSWI-TFDLKNKE--VSVKRVTQD---------------------------------------- 244 (363)
T ss_dssp CEEEEEEEEESSCCCCCCEE-EEEECSSC--EEEEEEECS----------------------------------------
T ss_pred CCceeEEEecCCCCccceEE-EEEecCCe--eeccccccc----------------------------------------
Confidence 78899999999988765211 11110100 000000000
Q ss_pred eeeeeEEecCeeEEEEEeccCCCceeEEEEeeCC--ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccc
Q psy2776 412 KGRNITYENNVARFTVVNCSESSEGRYTCKATNE--AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFS 489 (803)
Q Consensus 412 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~--~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (803)
.......++...|+|.+++.+|+|.|+|.|.|. .|....
T Consensus 245 -~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~-------------------------------------- 285 (363)
T 1wio_A 245 -PKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ-------------------------------------- 285 (363)
T ss_dssp -SCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEE--------------------------------------
T ss_pred -hhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEE--------------------------------------
Confidence 000001233457999999999999999999999 886554
Q ss_pred cccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe--eEEeeCCeeecCCCcEEEEecCCeEEEE
Q psy2776 490 YKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE--ISWMKNGAEITDSKACRIFIDEETSTIA 567 (803)
Q Consensus 490 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~--v~W~~~g~~i~~~~~~~~~~~~~~~~L~ 567 (803)
.+.|.|. -..|+.+.|.|.+.|.|+|. +.|+|+|..+.. +..|.
T Consensus 286 ----~~~l~V~-------------------~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----------~~~l~ 331 (363)
T 1wio_A 286 ----EVNLVVM-------------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----------SKREK 331 (363)
T ss_dssp ----EEEEEEE-------------------EECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----------EESSS
T ss_pred ----EEeEEEE-------------------EecCCCeeEEEEEccccCCCccEEEEeCCCceee-----------eeeee
Confidence 2233332 01288999999999999988 999999987753 34678
Q ss_pred EeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 568 IYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 568 i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|.++..+|+|.|+|.|.|. |....+..|.|.
T Consensus 332 i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 332 AVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp EEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred eeeeccccceeEEEEEecC-CeEEEecceEec
Confidence 8999999999999999975 566666666663
No 51
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.97 E-value=1.9e-29 Score=280.52 Aligned_cols=338 Identities=14% Similarity=0.206 Sum_probs=205.7
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECc-cCCC-e
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTP-D 175 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p-~ 175 (803)
...|.|.+++.+|+|.|+|.+.+..+.. .+.. ..+.+..+ ..+|.+...+....+.+|+.+.|.|.+.| .|.+ .
T Consensus 74 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~-~~l~V~~~--~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~ 149 (438)
T 1qgc_4 74 DFTLTIDPVEADDVATYYCQQSNEVPLT-FGAG-TKLDLKRA--DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN 149 (438)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSSTTCC-BCCC-EEEEECCC--CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEE
T ss_pred cEEEEeCCCcCcCCeeEEEEEecCCCcc-ccCc-eeEEecCC--CCCCEEEecCCChhhccCCceEEEEEEccccCCCcE
Confidence 4689999999999999999999876632 1112 22333221 24666665444444457889999999987 6777 8
Q ss_pred eEEEEcCeeccceeEE---E--ec-----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEE
Q psy2776 176 IKWYKDDSLIKGRNIT---Y--EN-----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIIT 245 (803)
Q Consensus 176 i~W~~~~~~~~~~~~~---~--~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~ 245 (803)
+.|+|++..+...... . .. ....|.|.++..+|+|.|+|.|.|..+.......+ .... ....
T Consensus 150 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~--~~~~----~~~~-- 221 (438)
T 1qgc_4 150 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF--NRNE----CEVM-- 221 (438)
T ss_dssp EEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE--ETTC-----CCE--
T ss_pred EEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccc--cccc----ceeE--
Confidence 9999999887654111 1 01 13579999999999999999999988765332222 2110 0000
Q ss_pred eecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecccccee
Q psy2776 246 ARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDAT 325 (803)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (803)
+ ..+....+.+|+.+.
T Consensus 222 ---------------------------------------------------------------~-~~~~~~~v~~G~~v~ 237 (438)
T 1qgc_4 222 ---------------------------------------------------------------L-VESGGGLVKPGGSLK 237 (438)
T ss_dssp ---------------------------------------------------------------E-EEECCEEECTTCCEE
T ss_pred ---------------------------------------------------------------E-ecCCceEEecCCcEE
Confidence 0 011223466799999
Q ss_pred EEEEe-cCC--ceeeEEeec--CeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCcee
Q psy2776 326 FQVEL-SSP--DIQVKWLKK--GKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWW 400 (803)
Q Consensus 326 l~C~~-~~p--~~~i~W~~~--g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~ 400 (803)
|.|.+ +.| .+.+.|+|+ |..+.. ............ ......+.
T Consensus 238 L~C~~~g~p~~~~~v~W~k~~~g~~~~~----~~~~~~~~~~~~---~~~~~~~r------------------------- 285 (438)
T 1qgc_4 238 LSCTASGFIFNRCAMSWVRQTPEKRLEW----VATISSGGTYTY---YPDSVKGR------------------------- 285 (438)
T ss_dssp EEEEEESSCGGGSCEEEEEEETTTEEEE----EEEECTTSCCEE---CCGGGTTT-------------------------
T ss_pred EEEEEcccccCCcEEEEEECCCCCCcEE----EEEEeecCCcee---cCcccCCc-------------------------
Confidence 99999 777 689999997 443321 000000000000 00000000
Q ss_pred eeeeecCcceeeeeeeEEe--cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchh
Q psy2776 401 FESKYKDDSLIKGRNITYE--NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMK 478 (803)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 478 (803)
..+... .+...|.|.+++.+|+|.|+|.|.|..+....... +
T Consensus 286 -------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~--~--------------------- 329 (438)
T 1qgc_4 286 -------------FTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYW--G--------------------- 329 (438)
T ss_dssp -------------EEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSB--C---------------------
T ss_pred -------------EEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceee--C---------------------
Confidence 011111 33567999999999999999999985542111000 0
Q ss_pred hhhcccccccccccceeeeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcE
Q psy2776 479 RVLQKLAVPFSYKTRTTNLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKAC 555 (803)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~ 555 (803)
....|.|.. ++..|.+..... ...+.+|+.+.|.|.+.|. |.+ .+.|+++|..+......
T Consensus 330 --------------~~~~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~ 392 (438)
T 1qgc_4 330 --------------QGTVVTVSAAKTTPPSVYPLAP---GSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP 392 (438)
T ss_dssp --------------CCEEEEECSSCCBCCEEEEECC---CGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECC
T ss_pred --------------CCEEEEEecCCCCCCeEEEcCc---ccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecC
Confidence 012233332 112222221111 1234579999999999997 877 99999999876532111
Q ss_pred EEEecC---CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 556 RIFIDE---ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 556 ~~~~~~---~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
.+...+ -.+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus 393 ~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 393 AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp CEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred ccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence 111111 12479999999999 999999999999877665543
No 52
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.97 E-value=2.3e-31 Score=284.52 Aligned_cols=295 Identities=21% Similarity=0.298 Sum_probs=144.0
Q ss_pred CceeeeccccceeEEEEe-cC-CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SS-PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~-p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +. |.+.+.|+|+|..+..+.++.+
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~------------------------------------ 58 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV------------------------------------ 58 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe------------------------------------
Confidence 566677789999999999 54 6789999999988765433221
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.|.|. |..... +.|.+....
T Consensus 59 ------------------------------~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~---------~~l~V~~~~ 98 (334)
T 1ry7_B 59 ------------------------------GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCH---------FSVRVTDAP 98 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------ccceEEEeecccccCEEEEEEEEeC-CeEEEE---------EEEEEeccC
Confidence 1124888888889999999999887 443331 122222111
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
........ .. ..... .....+|.+..... .......+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.
T Consensus 99 ~~~~~~~~--~~--------~~~~~-~~~~~~p~~~~p~~--~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~ 165 (334)
T 1ry7_B 99 SSGDDEDG--ED--------EAEDT-GVDTGAPYWTRPER--MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFR 165 (334)
T ss_dssp -------------------------------CCCCSCCTT--CCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCC
T ss_pred cccccccc--cc--------ccccc-cccCCCCEEecccc--ccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECc
Confidence 00000000 00 00000 00001222111000 00123568889999999999999999999999999887
Q ss_pred CCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 551 DSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 551 ~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
...+. .+........|.|.++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus 166 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~--------------------------- 218 (334)
T 1ry7_B 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--------------------------- 218 (334)
T ss_dssp TTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC---------------------------
T ss_pred ccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC---------------------------
Confidence 65432 11223345689999999999999999999999998888888886532
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEe-ccceeEEecCCeEEEEEEEeecCCCceEEee
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIE-RFEEKTVKEKGTIRLMAKVKASPAPSIVWFR 708 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~ 708 (803)
..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 219 ----------------------------------------~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~ 258 (334)
T 1ry7_B 219 ----------------------------------------PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 258 (334)
T ss_dssp ----------------------------------------CSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEE
T ss_pred ----------------------------------------CCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEE
Confidence 11333332 2345778999999999999999999999999
Q ss_pred ----CCeeccCCCCe--EEEe-------eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 709 ----NNKPLLSSPKK--REIF-------DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 709 ----~~~~l~~~~~~--~~~~-------~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
||..+..+.+. .+.. ++....|.|.++ +.+|+|.|+|.|.|.+|....++.|.|.
T Consensus 259 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 326 (334)
T 1ry7_B 259 HVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGFSHHSAWLVVL 326 (334)
T ss_dssp CCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSC-CTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred CCcCCCccccCCCCeeEEEeecCccccccccccEEEEccC-CHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence 77777654431 1111 122347999999 7899999999999999999999999985
No 53
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=2.2e-29 Score=263.38 Aligned_cols=266 Identities=17% Similarity=0.235 Sum_probs=192.4
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+ .+.|++++..+. ........|.|.+++.+|+|.|+|.+.| |
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g 79 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE----MVENKKNEWIQEKAEATRTGTYTCSNSN--G 79 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC----EEEECSSEEEETTCCGGGCEEEEEEESS--S
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee----eecCCCceEEEeccCHHhCeEEEEEeeC--C
Confidence 46788888888889999999999999987 899999998761 1122337899999999999999999999 5
Q ss_pred CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccC
Q psy2776 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESK 301 (803)
Q Consensus 222 ~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (803)
. ..++.|.|...+..
T Consensus 80 ~-~~~~~l~V~~~~~~---------------------------------------------------------------- 94 (290)
T 2o26_X 80 L-TSSIYVFVRDPAKL---------------------------------------------------------------- 94 (290)
T ss_dssp C-EEEEEEEEECSSCC----------------------------------------------------------------
T ss_pred c-cEEEEEEEeCCCcc----------------------------------------------------------------
Confidence 4 66677777755210
Q ss_pred CCccccccccCCceeeeccccceeEEEEecCCc-eeeEE-eecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVELSSPD-IQVKW-LKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~-~~i~W-~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
+ ..+....+.+|+.+.|.|.+..|. +.+.| +++|..+..+.++.+...+
T Consensus 95 ------~--~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~--------------------- 145 (290)
T 2o26_X 95 ------F--LVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA--------------------- 145 (290)
T ss_dssp ------B--CCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTT---------------------
T ss_pred ------c--ccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCC---------------------
Confidence 0 112233445799999999996588 99999 5788888765443332221
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
.|.|.+++.+|+| .|+|.|.|..+.....
T Consensus 146 --------------------------------------------~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~------ 175 (290)
T 2o26_X 146 --------------------------------------------GITIKNVKRAYHRLCVRCAAQRDGTWLHSD------ 175 (290)
T ss_dssp --------------------------------------------EEEEESCCGGGTTCEEEEEEEETTEEEECC------
T ss_pred --------------------------------------------CEEEecccHHHCCCEEEEEEEECCceEEeE------
Confidence 4889999999999 9999999985554331
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC----CCCCCccceeeeccccceEEeecceeEEEEEEcC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ----SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG 534 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g 534 (803)
.+.|.|. .+|.+ .. ......+.+|+.+.|.|.+.|
T Consensus 176 -----------------------------------~~~l~V~~~~~~~P~i---~~---~~~~~~v~~G~~v~l~C~~~g 214 (290)
T 2o26_X 176 -----------------------------------KFTLKVREAIKAIPVV---SV---PETSHLLKKGDTFTVVCTIKD 214 (290)
T ss_dssp -----------------------------------CEEEEEECCCCSCCEE---EC---SCSBCCCCTTCCEEEEEEEEE
T ss_pred -----------------------------------EEEEEEEeCCCCCCcc---cc---CCCcceEecCCcEEEEEEEec
Confidence 2333333 23321 11 112346788999999999999
Q ss_pred cCCCe-eEEeeCCeee----cCCCcEEEE---ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 535 FPRPE-ISWMKNGAEI----TDSKACRIF---IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 535 ~p~~~-v~W~~~g~~i----~~~~~~~~~---~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|.|. +.|+++|..+ ......... .....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 215 ~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp SSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred CCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 99996 9999999873 322222222 11235799999999999999999999999999999999987754
No 54
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=3.6e-29 Score=261.69 Aligned_cols=260 Identities=16% Similarity=0.143 Sum_probs=192.6
Q ss_pred cCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 311 KLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
..+....+.+|+.+.|.|.+.. .+.|+|++..+. ....
T Consensus 17 ~~~~~~~v~~G~~v~l~C~~~~---~i~W~~~~~~~~-----~~~~---------------------------------- 54 (290)
T 2o26_X 17 PAQSELIVEAGDTLSLTCIDPD---FVRWTFKTYFNE-----MVEN---------------------------------- 54 (290)
T ss_dssp SCSSEEEEETTSCEEEEEECTT---EEEEEEECSSSC-----EEEE----------------------------------
T ss_pred CCCCeEEEcCCCcEEEEECCCC---cEEEecCCccee-----eecC----------------------------------
Confidence 4556667788999999999933 899999987761 0011
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.|.| |. ..
T Consensus 55 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~------------------- 82 (290)
T 2o26_X 55 ------------------------------KKNEWIQEKAEATRTGTYTCSNSN--GL-TS------------------- 82 (290)
T ss_dssp ------------------------------CSSEEEETTCCGGGCEEEEEEESS--SC-EE-------------------
T ss_pred ------------------------------CCceEEEeccCHHhCeEEEEEeeC--Cc-cE-------------------
Confidence 113588888999999999999999 33 22
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-CeeEE-eeCCee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PEISW-MKNGAE 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W-~~~g~~ 548 (803)
.+.|.|..+|... .......+.+|+.+.|.|.+.+ |. +.+.| +++|..
T Consensus 83 -----------------------~~~l~V~~~~~~~------~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~ 132 (290)
T 2o26_X 83 -----------------------SIYVFVRDPAKLF------LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKS 132 (290)
T ss_dssp -----------------------EEEEEEECSSCCB------CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCC
T ss_pred -----------------------EEEEEEeCCCccc------ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcC
Confidence 3445555555432 1123567789999999999996 87 89999 578888
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCe-EEEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQY 626 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~ 626 (803)
+..+.++.+.. ...|.|.++..+|+| .|+|.|.|..+.. +..+.|.|...
T Consensus 133 l~~~~~~~~~~---~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~------------------------- 184 (290)
T 2o26_X 133 LPTDLTFVPNP---KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA------------------------- 184 (290)
T ss_dssp CCTTCEEEEET---TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC-------------------------
T ss_pred CCCCCceeeCC---CCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC-------------------------
Confidence 87765544332 247999999999999 9999999985442 23466666421
Q ss_pred EEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCc-eE
Q psy2776 627 TVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IV 705 (803)
Q Consensus 627 ~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~ 705 (803)
...+|.+...+....+.+|+.+.|.|.+.|.|.|. +.
T Consensus 185 ------------------------------------------~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~ 222 (290)
T 2o26_X 185 ------------------------------------------IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSM 222 (290)
T ss_dssp ------------------------------------------CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEE
T ss_pred ------------------------------------------CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEE
Confidence 12277787777777899999999999999999997 99
Q ss_pred EeeCCeec----cCCCCeEEE---eeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 706 WFRNNKPL----LSSPKKREI---FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 706 W~~~~~~l----~~~~~~~~~---~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|+++|..+ ......... .......|.|.++ +.+|+|.|+|.|.|.+|..+..+.|.|..
T Consensus 223 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSA-RVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSC-CSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EecCCCCCccceeecccccccCceeeEEEEEEEEcCC-CcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 99998873 333322222 1234568999999 78999999999999999999988888853
No 55
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.96 E-value=1.1e-27 Score=261.84 Aligned_cols=323 Identities=19% Similarity=0.235 Sum_probs=222.2
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceeccc------eeEEEe--cCeeEEEEecCCCCcceEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLIKG------RNITYE--NNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~~~------~~~~~~--~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+|.|.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+.. .++... .....|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 356665 5667788999999999999999999999999 776643 233333 35679999999999999999
Q ss_pred EEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 214 CKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 214 C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
|.|.|..|....++.|.|..+|..
T Consensus 80 C~a~n~~g~~~~~~~l~V~~~P~~-------------------------------------------------------- 103 (389)
T 2jll_A 80 CEAASRIGGHQKSMYLDIEYAPKF-------------------------------------------------------- 103 (389)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEEE--------------------------------------------------------
T ss_pred EEEEeCCCCcceEEEEEEEeCCEE--------------------------------------------------------
Confidence 999999999888888988866411
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc--eeEEEEcCceeEEEEeecCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQ 370 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~l~i~~~~~ 370 (803)
. ..+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.... ++.+..+
T Consensus 104 ---------------~-~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~------------- 154 (389)
T 2jll_A 104 ---------------I-SNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST------------- 154 (389)
T ss_dssp ---------------C-CSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC-------------
T ss_pred ---------------e-cCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc-------------
Confidence 0 01222345679999999999 89999999999999887543 2222221
Q ss_pred CCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeee
Q psy2776 371 DDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAE 450 (803)
Q Consensus 371 ~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~ 450 (803)
.....|.|.++..+|+|.|+|.|.|..|...
T Consensus 155 -------------------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 185 (389)
T 2jll_A 155 -------------------------------------------------GRKMILEIAPTSDNDFGRYNCTATNHIGTRF 185 (389)
T ss_dssp -------------------------------------------------SSCEEEEECCCSTTSSEEEEEEEEETTEEEE
T ss_pred -------------------------------------------------CCEEEEEECCCChhhCEEEEEEEEcCCCcEE
Confidence 2345688899999999999999999999876
Q ss_pred eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEE
Q psy2776 451 TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEV 530 (803)
Q Consensus 451 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C 530 (803)
. .+.+.+..+|..|... ......+..+.|.|
T Consensus 186 ~------------------------------------------~~~l~v~~~P~~P~~~-------~~~~~~~~~~~l~w 216 (389)
T 2jll_A 186 Q------------------------------------------EYILALADVPSSPYGV-------KIIELSQTTAKVSF 216 (389)
T ss_dssp E------------------------------------------EEEEEECCCCCCCEEE-------EEEEECSSCEEEEE
T ss_pred E------------------------------------------EEEEEecCCCCCCcce-------EEeeccCCEEEEEE
Confidence 6 3444455555544211 11122356788999
Q ss_pred EEc----CcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee----
Q psy2776 531 KYF----GFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG---- 600 (803)
Q Consensus 531 ~~~----g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~---- 600 (803)
... |.|.. .+.|.+++.... ..+........|.|.++...+.|.|+|.|.|..|....+..+.+..
T Consensus 217 ~~p~~~~g~pi~~y~v~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~ 292 (389)
T 2jll_A 217 NKPDSHGGVPIHHYQVDVKEVASEIW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR 292 (389)
T ss_dssp ECCSCCTTSCEEEEEEEEEETTCSCC----EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCC
T ss_pred eCCCCCCCcceEEEEEEEEECCCccc----EEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCC
Confidence 742 22332 467887764211 1222333446899999999999999999999988754333333222
Q ss_pred eE----eE----eeecccccEEE-------------------------eeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 601 YI----IQ----QQEKNSLKFTK-------------------------VATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 601 ~p----~~----~~~~~~~~w~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
+| +. ......+.|.. ..........+++.+|.+...|.|+++|.|..
T Consensus 293 ~p~~p~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~ 372 (389)
T 2jll_A 293 EPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRL 372 (389)
T ss_dssp CCCCCCEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-C
T ss_pred CCCCCccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCC
Confidence 11 00 00111222322 22223345678999999999999999999999
Q ss_pred CCCCCcc
Q psy2776 648 GLGPEAT 654 (803)
Q Consensus 648 g~~~~s~ 654 (803)
|.++++.
T Consensus 373 G~s~~s~ 379 (389)
T 2jll_A 373 GYSEPTV 379 (389)
T ss_dssp CBCCCEE
T ss_pred cCCCcee
Confidence 9987664
No 56
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.96 E-value=1.5e-29 Score=267.98 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=194.3
Q ss_pred eeeeccccceeEEEEe-cCC-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 315 VTLVPHLGDATFQVEL-SSP-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
...+.+|+.+.|.|.+ +.| .+.+.|+|+|..+..... .
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~-----~----------------------------------- 53 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-----Q----------------------------------- 53 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCC-----T-----------------------------------
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccc-----c-----------------------------------
Confidence 4566789999999999 665 789999999864421100 0
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
+.++...+ ..|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 54 --------------------~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~-------------------- 91 (315)
T 1itb_B 54 --------------------ASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIK-------------------- 91 (315)
T ss_dssp --------------------TSSSEECS--SBEECTTCCGGGCSCCEECCCSSSCCCCEE--------------------
T ss_pred --------------------CCcEeccC--CeEEECCCChhhCEEEEEEEeCCceEEEEE--------------------
Confidence 00011111 148899999999999999999987655442
Q ss_pred cCCchhhhhcccccccccccceeeecc-CCCCCCccceeeeccccceEEeecceeEEEEEE------cCcCCCeeEEeeC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQI-QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY------FGFPRPEISWMKN 545 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v-~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~------~g~p~~~v~W~~~ 545 (803)
+.+.+ ..+|.+... ........+.+|+.+.|.|.+ .|.|.+.+.|+|+
T Consensus 92 ----------------------~~v~v~~~~p~~~~~---~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~ 146 (315)
T 1itb_B 92 ----------------------ISAKFVENEPNLCYN---AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD 146 (315)
T ss_dssp ----------------------CCCEEECCCTTSSSC---GGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEET
T ss_pred ----------------------EEEEEeCCCCCcccc---cccccceEEecCCCeEEEEecccccccCCCCCCEEEEEEC
Confidence 11221 123322110 011123568889999999998 8999999999999
Q ss_pred CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE-cCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCC
Q psy2776 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT-NAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDP 621 (803)
Q Consensus 546 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~-n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~ 621 (803)
|..+..+... +.. .+..|.|.++..+|+|.|+|.|. |..|.. +..+.|.+...
T Consensus 147 ~~~l~~~~~~-~~~--~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~-------------------- 203 (315)
T 1itb_B 147 CKPLLLDNIH-FSG--VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE-------------------- 203 (315)
T ss_dssp TEECCCCSSS-EEE--ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC--------------------
T ss_pred CEECCCccce-Eee--cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecC--------------------
Confidence 9998654322 222 13489999999999999999999 788876 33333433221
Q ss_pred ccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccce-eEEecCCeEEEEEEEeecC
Q psy2776 622 STLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEE-KTVKEKGTIRLMAKVKASP 700 (803)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p 700 (803)
....+|.+...+.. ..+.+|+.+.|.|.+.|.|
T Consensus 204 ----------------------------------------------~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P 237 (315)
T 1itb_B 204 ----------------------------------------------NKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237 (315)
T ss_dssp ----------------------------------------------CCCCCCEECSCCSEEEECCSSSCEEEEEEEEECT
T ss_pred ----------------------------------------------CCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCC
Confidence 01236777666554 5789999999999999999
Q ss_pred CCceEEeeCCeeccCCCCeEEE-----ee-------CceEEEEEecCCCCCC-ceeEEEEEEccCcceeeeEEEEEE
Q psy2776 701 APSIVWFRNNKPLLSSPKKREI-----FD-------GENIILELKEADSETD-AGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 701 ~~~v~W~~~~~~l~~~~~~~~~-----~~-------~~~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.|.+.|+++|.++..+.+.... .. .....|.|.++ +.+| +|.|+|.|.|.+|.++.++.|.|+
T Consensus 238 ~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 238 SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI-ESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp TSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSC-CGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeec-CHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 9999999999999876542221 11 12458999999 7899 999999999999999999999874
No 57
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=259.43 Aligned_cols=295 Identities=16% Similarity=0.204 Sum_probs=194.7
Q ss_pred CeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccc-ee--EEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 153 DSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKG-RN--ITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~-~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
.+.+.+|+.+.|.|... +.|.+.+.|+|++..+.. .+ +...+....|.|.+++.+|+|.|+|.+.|..|... ++.
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~ 88 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL 88 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence 35677999999998876 689999999999998873 23 33344668999999999999999999999988544 555
Q ss_pred EEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccc
Q psy2776 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308 (803)
Q Consensus 229 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (803)
+.|........... ....+.+
T Consensus 89 l~v~~~~~~~~~~~-----------------------------------------------------------~~~~p~~ 109 (312)
T 2y23_A 89 IDEEELKRLLALSH-----------------------------------------------------------EHKFPTV 109 (312)
T ss_dssp ECHHHHHHHHHHHH-----------------------------------------------------------HHHSCBC
T ss_pred EEEeeeeeeecccc-----------------------------------------------------------cCCCCcc
Confidence 55543210000000 0000001
Q ss_pred cccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccc
Q psy2776 309 LSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 309 ~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
....+....+.+|+.+.|.|.+ +.|.+.+.|+++|.++..+.++.+..+..
T Consensus 110 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~--------------------------- 162 (312)
T 2y23_A 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN--------------------------- 162 (312)
T ss_dssp CEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT---------------------------
T ss_pred ccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC---------------------------
Confidence 1111113455679999999999 57999999999999988765554443221
Q ss_pred eeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEee
Q psy2776 387 SKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSL 466 (803)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~ 466 (803)
.+...|.|.+++.+|+|.|+|.+.+..+..... +.+
T Consensus 163 ---------------------------------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-----------~~~ 198 (312)
T 2y23_A 163 ---------------------------------TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST-----------VVL 198 (312)
T ss_dssp ---------------------------------TTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE-----------EEE
T ss_pred ---------------------------------CCEEEEEEccCCcccCEeEEEEEEeCCceEEEE-----------EEE
Confidence 233458888889999999999998754443331 111
Q ss_pred eccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-eeEEeeC
Q psy2776 467 RKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKN 545 (803)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~ 545 (803)
.... +...+..... +...+....+|.+. .. ....+.+|+.+.|.|.+.|.|.+ .+.|+|+
T Consensus 199 ~~~~------~~~~~~~~~~------~~~~~~~~~~p~~~------~~-~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~ 259 (312)
T 2y23_A 199 VGDV------FKKLQKEAEF------QRQEWIRKQGPHFV------EY-LSWEVTGECNVLLKCKVANIKKETHIVWYKD 259 (312)
T ss_dssp CTHH------HHHHHHHHHH------HHHHHHHHHSSEEE------EE-EEEEEETTTEEEEEEEEESCCSSCEEEEEET
T ss_pred cchh------hhhhcccccc------cccchhhccCCcee------ec-ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeC
Confidence 0000 0000000000 00000111122211 11 12568899999999999999998 9999999
Q ss_pred CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 546 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|..+..+.++.+. .+...|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 260 g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 260 EREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp TEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred CEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 9999866555544 346899999999999999999999999999999998764
No 58
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.96 E-value=9.5e-29 Score=261.57 Aligned_cols=223 Identities=18% Similarity=0.252 Sum_probs=159.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCC-ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNE-AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~-~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+..+|+|.+++.+|+|.|+|.+.+. .+.... .+.|.+
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~------------------------------------------~~~l~v 114 (313)
T 4fqp_A 77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV------------------------------------------DIWLRV 114 (313)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEECSSSCEEEE------------------------------------------EEEECC
T ss_pred cceEEEECcCChhhCEEEEEEEeeccCcceee------------------------------------------eeeeee
Confidence 3456999999999999999988643 343333 445555
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCCcEEEEecCC---eEEEEEeeeccCc
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSKACRIFIDEE---TSTIAIYSVVRAD 575 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~~~~~~~---~~~L~i~~v~~~d 575 (803)
..+|...... ....+..|+.+.+.|.+. +.|.+.+.|++++..+...........+. .+.|.|.++..+|
T Consensus 115 ~~~P~~~~~~------~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d 188 (313)
T 4fqp_A 115 LAKPQNTAEV------QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188 (313)
T ss_dssp BBCCEEEEEE------CCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGT
T ss_pred ccCCcceecc------cceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeeccccccc
Confidence 5555432211 234456788899999864 78999999999998776432222111111 2569999999999
Q ss_pred CeEEEEEEEcCCCCeEE--EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 576 TSTYTVTATNAAGSTSL--DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~--s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|+|.|.|..+.... ++.|.|..
T Consensus 189 ~g~Y~C~a~n~~~~~~~~~~~~l~V~~----------------------------------------------------- 215 (313)
T 4fqp_A 189 GKNVTCKVEHESFEKPQLLTVNLTVYY----------------------------------------------------- 215 (313)
T ss_dssp TCEEEEEEECTTSSSCEEEEEECCBCE-----------------------------------------------------
T ss_pred CeeEEEEEEccCcCccceeeeeccccc-----------------------------------------------------
Confidence 99999999998776544 44455544
Q ss_pred cceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILE 731 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~ 731 (803)
+|.+. .......+.+|+.++|.|.+.|.|.| .|.|+|+|.++.... ..++. +|.
T Consensus 216 ------------------~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~----~~~~~--~L~ 271 (313)
T 4fqp_A 216 ------------------PPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA----VAQGA--QLL 271 (313)
T ss_dssp ------------------EEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE----EEETT--EEE
T ss_pred ------------------CCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce----EEeCC--EEE
Confidence 33332 23334556778999999999999999 699999999885542 22333 699
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCC
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPS 772 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~ 772 (803)
|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.. .||.
T Consensus 272 i~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~---~PP~ 308 (313)
T 4fqp_A 272 IRPV-DKPINTTLICNVTNALGARQAELTVQVKE---GPPH 308 (313)
T ss_dssp ECCC-SSCCEEEEEEEEECSSCEEEEEEEEEEEC---CC--
T ss_pred ECcC-ChhhCEEEEEEEEeCCCcEEEEEEEEEEe---CCCC
Confidence 9999 78999999999999999999999999863 4554
No 59
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.96 E-value=7.2e-29 Score=264.45 Aligned_cols=263 Identities=15% Similarity=0.130 Sum_probs=190.0
Q ss_pred eeeeccccceeEEEEe-cC---------CceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 315 VTLVPHLGDATFQVEL-SS---------PDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~---------p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
...+.+|+.+.|.|.+ +. |.+.+.|+|++..+....+. ..
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~---------------------------- 87 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VK---------------------------- 87 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EE----------------------------
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--ee----------------------------
Confidence 4457789999999998 53 66899999998776532221 11
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCCCceeE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGLPLSIV 463 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~~~~~~ 463 (803)
...|.|.+++.+|+| .|+|.|.|..|.....
T Consensus 88 -------------------------------------~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~----------- 119 (329)
T 3oq3_B 88 -------------------------------------NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG----------- 119 (329)
T ss_dssp -------------------------------------TTEEEESSCCGGGGGCCEEEEEECTTSCEEEE-----------
T ss_pred -------------------------------------cceEEEcCCChHhCCCcEEEEEEeCCCceeeE-----------
Confidence 124888889999999 8999999988764442
Q ss_pred EeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC-CCeeEE
Q psy2776 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RPEISW 542 (803)
Q Consensus 464 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p-~~~v~W 542 (803)
.+.+.+..+|...... ....+.+|+.+.|.|.+.|.| .+.+.|
T Consensus 120 ------------------------------~~~~v~~~~p~~~~~~------~~~~~~~G~~v~L~C~~~g~p~~~~i~W 163 (329)
T 3oq3_B 120 ------------------------------IVRSHIRKPPSCIPET------YELGTHDKYGIDLYCGILYAKHYNNITW 163 (329)
T ss_dssp ------------------------------EEEEEECCCCSCEEEE------EETTSSTTTCEEEECCCCSCCCCCEEEE
T ss_pred ------------------------------EEEEEEcCCCcEeccc------cceEEeCCCcEEEEeccCCCCCCceEEE
Confidence 1112233344321111 112356799999999999999 899999
Q ss_pred eeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcC--CCCeEEE----EEEEEeeeEeEeeecccccEEE
Q psy2776 543 MKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNA--AGSTSLD----LSLQVLGYIIQQQEKNSLKFTK 615 (803)
Q Consensus 543 ~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~--~g~~s~s----~~l~V~~~p~~~~~~~~~~w~~ 615 (803)
+|+|..+... .++... +..|.|.++..+|+|.|+|.|.|. .|..... +.|.|..+|.
T Consensus 164 ~k~~~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~------------ 227 (329)
T 3oq3_B 164 YKNNQELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQD------------ 227 (329)
T ss_dssp EETTEECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCC------------
T ss_pred EECCccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCC------------
Confidence 9999988643 333322 368999999999999999999987 6554443 5666654320
Q ss_pred eeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEE
Q psy2776 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695 (803)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~ 695 (803)
...| ++ .+....+.+|+.+.|.|.
T Consensus 228 ------------------------------------------------------~~~~-~~-~~~~~~v~~G~~~~l~C~ 251 (329)
T 3oq3_B 228 ------------------------------------------------------HRFK-LI-LDPKINVTIGEPANITCT 251 (329)
T ss_dssp ------------------------------------------------------CCEE-EE-CCSEEEECTTSCEEEEEE
T ss_pred ------------------------------------------------------CCCc-ee-cCCeeEEecCCCEEEEEE
Confidence 0012 22 455678899999999999
Q ss_pred EeecC---CC-ceEEeeCCeecc-CCCCeEEE--eeC--ceEEEEEecCCCCCCce-eEEEEEEccCcceeeeEEEEEE
Q psy2776 696 VKASP---AP-SIVWFRNNKPLL-SSPKKREI--FDG--ENIILELKEADSETDAG-DYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 696 ~~g~p---~~-~v~W~~~~~~l~-~~~~~~~~--~~~--~~~~L~i~~v~~~~D~G-~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|.| .+ .+.|+++|..+. .+.+.... ..+ ....|.|.++ +.+|+| .|+|.|.|.+|..+.++.|.|+
T Consensus 252 ~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~~Y~C~a~N~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 252 AVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV-TEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329 (329)
T ss_dssp EEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSC-CGGGTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEec-cHHHCCCcEEEEEEecCCceEEEEEEEeC
Confidence 99998 77 889999998853 33332222 122 4578999999 789999 9999999999999999988873
No 60
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.96 E-value=1.2e-28 Score=257.54 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=170.8
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|.|.+++.+|+|.|+|.+.+..+.... .+.|.|..
T Consensus 50 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~------------------------------------------~~~l~V~~ 87 (289)
T 3ejj_X 50 GSTLTTRNATFKNTGTYRCTELEDPMAGST------------------------------------------TIHLYVKD 87 (289)
T ss_dssp CCEEEESSCCGGGCEEEEEECCC-----CE------------------------------------------EEEEEECC
T ss_pred ccEEEEeeeccccCEEEEEEEeccCCccee------------------------------------------EEEEEEeC
Confidence 356889999999999999999988776443 55666766
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
+|... ........+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....++.+.. ...|.|.++..+|+|.|
T Consensus 88 ~~~~~-----~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y 159 (289)
T 3ejj_X 88 PAHSW-----NLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP---WRGFIIRKAKVLDSNTY 159 (289)
T ss_dssp SSCSE-----EESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET---TTEEEESSCCGGGCEEE
T ss_pred CCcce-----ecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC---CCCEEEeecccccCEEE
Confidence 66531 1122467789999999999999987765 99976 677776666655432 34699999999999999
Q ss_pred EEEEE-cCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceee
Q psy2776 580 TVTAT-NAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658 (803)
Q Consensus 580 ~C~a~-n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~ 658 (803)
+|.|. |..+..+..+.|.|...+
T Consensus 160 ~C~a~~~~~~~~~~~~~l~V~~~~-------------------------------------------------------- 183 (289)
T 3ejj_X 160 VCKTMVNGRESTSTGIWLKVNRVH-------------------------------------------------------- 183 (289)
T ss_dssp EEEEEETTEEEECCCEEEEEESSC--------------------------------------------------------
T ss_pred EEEEEeCCCccccccEEEEEEECC--------------------------------------------------------
Confidence 99999 555666677777775311
Q ss_pred eeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEe--eCceEEEEEecC
Q psy2776 659 ALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIF--DGENIILELKEA 735 (803)
Q Consensus 659 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~--~~~~~~L~i~~v 735 (803)
..+|.+...+....+.+|+.+.|.|.+.| .|.+.+.|++++..+.......... ......|.|.++
T Consensus 184 -----------~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 252 (289)
T 3ejj_X 184 -----------PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAV 252 (289)
T ss_dssp -----------CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSC
T ss_pred -----------CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEee
Confidence 12677877777788889999999999998 7999999999999886543221111 122568999999
Q ss_pred CCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 736 DSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.+|+|.|+|.|.|.+|.++.++.|.+.
T Consensus 253 -~~~d~G~Y~C~a~N~~G~~~~s~~L~~~ 280 (289)
T 3ejj_X 253 -DFQDAGIYSCVASNDVGTRTATMNFQVV 280 (289)
T ss_dssp -CSSSCEEEEEEEECSSCEEEEEEEEECC
T ss_pred -cccCCEEEEEEEEcCCCCccccEEEEEE
Confidence 7999999999999999999999999984
No 61
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.96 E-value=1.2e-29 Score=273.07 Aligned_cols=228 Identities=14% Similarity=0.163 Sum_probs=137.7
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
.|.|.+++.+|+|.|+|.|.|..+.... .+.|.|..+|
T Consensus 80 ~L~i~~~~~~D~G~Y~C~a~n~~~~~~~------------------------------------------~~~l~V~~~~ 117 (349)
T 4dep_C 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKV------------------------------------------AFPLEVVQKD 117 (349)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEEE------------------------------------------EEEEEEECCC
T ss_pred EEEEccCChhhCEEEEEEEecCCceEEE------------------------------------------EEEEEEecCC
Confidence 5899999999999999999998777665 3334444433
Q ss_pred CCccceeeeccccceEEeecceeEEEEEE-----cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKY-----FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-----~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
....... .......+.+|+.+.|.|.+ .|.|.+.+.|+|+|..+....++. . .+..|.|.++..+|+|.
T Consensus 118 ~~~~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~--~--~~~~L~i~~v~~~d~G~ 191 (349)
T 4dep_C 118 SCFNSPM--KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--P--EGMNLSFLIALISNNGN 191 (349)
T ss_dssp TTSCCSC--CCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE--E--ETTEEEEESCCGGGCEE
T ss_pred cccCccc--ccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee--e--cCCEEEEeeeeecCCcE
Confidence 2211111 01124567889999999984 778999999999999886543332 2 23679999999999999
Q ss_pred EEEEEEcCC-CCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcc
Q psy2776 579 YTVTATNAA-GST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654 (803)
Q Consensus 579 Y~C~a~n~~-g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~ 654 (803)
|+|.|.|.. |.. +..+.|.|...+
T Consensus 192 Y~C~a~n~~~g~~~~~~~~~~l~v~~~~---------------------------------------------------- 219 (349)
T 4dep_C 192 YTCVVTYPENGRTFHLTRTLTVKVVGSP---------------------------------------------------- 219 (349)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECCG----------------------------------------------------
T ss_pred EEEEEEEeeCCEEEEEEEEEEEEEEccC----------------------------------------------------
Confidence 999999987 544 566666664421
Q ss_pred ceeeeeeecccCCCCCCCCeeEecccee--EEecCCeEEEEEEEe----ecCCCceEEeeCCeeccC-CCCeEEEe----
Q psy2776 655 TELVALATHATLGSPGQAPLFIERFEEK--TVKEKGTIRLMAKVK----ASPAPSIVWFRNNKPLLS-SPKKREIF---- 723 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~v~~g~~v~L~C~~~----g~p~~~v~W~~~~~~l~~-~~~~~~~~---- 723 (803)
....+|.+....... .+.+|+.+.|.|.+. |.|.|.+.|+++|..+.. +.++.+..
T Consensus 220 -------------~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~ 286 (349)
T 4dep_C 220 -------------KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISH 286 (349)
T ss_dssp -------------GGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEEC
T ss_pred -------------CCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceee
Confidence 001156665555433 788999999999999 578999999999998865 33322211
Q ss_pred ---eC--ceEEEEEecCCCCCCc-eeEEEEEEccCcceeeeEEEEEEe
Q psy2776 724 ---DG--ENIILELKEADSETDA-GDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 724 ---~~--~~~~L~i~~v~~~~D~-G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+ ...+|.|.++ +.+|+ |.|+|.|.|.+|..+..+.|.|++
T Consensus 287 ~~~~~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 287 SRTEDETRTQILSIKKV-TSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CTTCCEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred ecCCCcEEEEEEEEeec-cHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 11 2445999999 78999 999999999999999999999854
No 62
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.96 E-value=5.9e-30 Score=274.14 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=203.1
Q ss_pred CCceeeeccccceeEEEEe--------cCCceeeEEeecCeecc--ccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 312 LPSVTLVPHLGDATFQVEL--------SSPDIQVKWLKKGKEIK--ESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~--------~~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+. ......+
T Consensus 24 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~--------------------------- 76 (339)
T 3o4o_C 24 HYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM--------------------------- 76 (339)
T ss_dssp CSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCE---------------------------
T ss_pred CceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccE---------------------------
Confidence 3456667789999999998 77889999999987742 2111111
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
...+ ..|.|.+++.+|+|.|+|.+.|..|....
T Consensus 77 -----------------------------------~~~~--~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~---------- 109 (339)
T 3o4o_C 77 -----------------------------------WAQD--GALWLLPALQEDSGTYVCTTRNASYCDKM---------- 109 (339)
T ss_dssp -----------------------------------EEET--TEEEESSBCTTCCEEEECCEEETTEEEEE----------
T ss_pred -----------------------------------EeeC--CeEEECCCCcccCEEEEEEEECCcceEEE----------
Confidence 1111 24889999999999999999998876555
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEE-----EcCcC
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK-----YFGFP 536 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~-----~~g~p 536 (803)
.+.|.|..+|....... .....+.+|+.+.|.|. +.|.|
T Consensus 110 --------------------------------~~~l~V~~~~~~~~~~~----~~~~~~~~g~~v~l~C~~~~~~~~g~p 153 (339)
T 3o4o_C 110 --------------------------------SIELRVFENTDAFLPFI----SYPQILTLSTSGVLVCPDLSEFTRDKT 153 (339)
T ss_dssp --------------------------------EEEEEEECSCGGGHHHH----CEEEEEETTSCEEEECCSCTTTCCSSS
T ss_pred --------------------------------EEEEEEEcCCCcccccc----ccceEEECCCCEEEEecCCcccccCCC
Confidence 44555555443321111 11346789999999999 88999
Q ss_pred CCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccc
Q psy2776 537 RPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSL 611 (803)
Q Consensus 537 ~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~ 611 (803)
.+.+.|+|+|..+... .++.+ ..+...|.|.++..+|+|.|+|.|.|..|. .+.++.|.|...+
T Consensus 154 ~~~v~W~k~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~--------- 222 (339)
T 3o4o_C 154 DVKIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKK--------- 222 (339)
T ss_dssp CCCBCCEESSCBCCTTCSSEEE--CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCC---------
T ss_pred CceEEEecCCeeCCCCCceeEE--cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCC---------
Confidence 9999999999988765 33332 233458999999999999999999998874 5667777775532
Q ss_pred cEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEE
Q psy2776 612 KFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIR 691 (803)
Q Consensus 612 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~ 691 (803)
...+|.++..+....+.+|+.+.
T Consensus 223 ---------------------------------------------------------~~~~P~i~~~~~~~~v~~G~~v~ 245 (339)
T 3o4o_C 223 ---------------------------------------------------------EETIPVIISPLKTISASLGSRLT 245 (339)
T ss_dssp ---------------------------------------------------------CCCCCEECCCSCCCCCCCCSCCC
T ss_pred ---------------------------------------------------------CCCCCEEecCCceeEeccCCCEE
Confidence 11267777777777899999999
Q ss_pred EEEEE---eecC-CCceEEeeCCeeccC---------CCCeEEEeeCc---eEEEEEecCCCCCCc-eeEEEEEEccCcc
Q psy2776 692 LMAKV---KASP-APSIVWFRNNKPLLS---------SPKKREIFDGE---NIILELKEADSETDA-GDYKVVATNELGS 754 (803)
Q Consensus 692 L~C~~---~g~p-~~~v~W~~~~~~l~~---------~~~~~~~~~~~---~~~L~i~~v~~~~D~-G~Y~C~a~N~~G~ 754 (803)
|.|.+ .|.| .+.+.|+++|.++.. +.++....++. ...|.|.++ +.+|+ |.|+|.|.|.+|.
T Consensus 246 L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v-~~~d~~G~Y~C~a~N~~G~ 324 (339)
T 3o4o_C 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV-TREDLHMDFKCVVHNTLSF 324 (339)
T ss_dssp CCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSS-CCCSCCCCCEEEEEETTEE
T ss_pred EEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEe-chhhcCccEEEEEEeccCc
Confidence 99999 8999 889999999987642 22232222333 226999999 78997 9999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
+++.+.+.+.
T Consensus 325 ~~~~~~~~~~ 334 (339)
T 3o4o_C 325 QTLRTTVKEH 334 (339)
T ss_dssp ECCBCCCCC-
T ss_pred eEEEEEhhHh
Confidence 9999988763
No 63
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.96 E-value=6.6e-27 Score=264.37 Aligned_cols=177 Identities=12% Similarity=0.110 Sum_probs=114.2
Q ss_pred eEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 518 QRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+.+|+.+.|+|.+.|.++ ..++|+|+|..+...... ......+ .+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 307 ~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~ 386 (512)
T 1zvo_C 307 QDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP 386 (512)
T ss_pred HHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence 34668999999999998744 389999999886622111 1111111 257999999999999999999998776
Q ss_pred eEEEEEEEEe-eeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 590 TSLDLSLQVL-GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 590 ~s~s~~l~V~-~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
.. ...+... .. .
T Consensus 387 ~~-~~~~~~~~~~------------------------------------------------------------------~ 399 (512)
T 1zvo_C 387 PQ-RLMALREPAA------------------------------------------------------------------Q 399 (512)
T ss_pred CC-ceeEEeecCC------------------------------------------------------------------C
Confidence 43 2222210 00 0
Q ss_pred CCCCCeeEeccceeEEecCCeEE-EEEEEeecCCC--ceEEeeCCeeccCCCCe----EEEeeCc-e---EEEEEecCCC
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIR-LMAKVKASPAP--SIVWFRNNKPLLSSPKK----REIFDGE-N---IILELKEADS 737 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~-L~C~~~g~p~~--~v~W~~~~~~l~~~~~~----~~~~~~~-~---~~L~i~~v~~ 737 (803)
...+|.+...+... .|+.+. |.|.+.|++++ .+.|+|||.++..+... ....++. . ..|.|... .
T Consensus 400 ~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~-~ 475 (512)
T 1zvo_C 400 APVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAP-P 475 (512)
T ss_pred CCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECch-h
Confidence 01134443332222 789999 99999997544 68999999998654321 1122332 2 35666665 4
Q ss_pred CCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 738 ETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 738 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+|.|.|+|+|.|........+...+++
T Consensus 476 ~~~~g~YtC~v~h~~l~~~~~~~~~~~v 503 (512)
T 1zvo_C 476 SPQPATYTCVVSHEDSRTLLNASRSLEV 503 (512)
T ss_pred cCCCCeEEEEEEecCCCCceEEEEEEEe
Confidence 5679999999999987765555555543
No 64
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.96 E-value=1.6e-28 Score=259.80 Aligned_cols=271 Identities=17% Similarity=0.187 Sum_probs=189.0
Q ss_pred cCcCeeeecCCcEEEEEEECccCCC-----eeEEEEcCeeccc--------------eeEEEe-------cCeeEEEEec
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTP-----DIKWYKDDSLIKG--------------RNITYE-------NNVARFTVVN 203 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p-----~i~W~~~~~~~~~--------------~~~~~~-------~~~~~L~i~~ 203 (803)
.|.++.+..|++++|.|.+.+.+.+ .+.|+|++..... .+..+. ....+|.|.+
T Consensus 6 ~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 85 (313)
T 4fqp_A 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFG 85 (313)
T ss_dssp CCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECS
T ss_pred CCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECc
Confidence 4566777899999999999876665 4899998753221 111111 1235799999
Q ss_pred CCCCcceEEEEEEEcC-CcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 204 CSESSEGRYTCKATNE-AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~-~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
++.+|+|.|+|.+.+. .+.....+.|.+...|... .
T Consensus 86 v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~-----~-------------------------------------- 122 (313)
T 4fqp_A 86 LRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT-----A-------------------------------------- 122 (313)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEE-----E--------------------------------------
T ss_pred CChhhCEEEEEEEeeccCcceeeeeeeeeccCCcce-----e--------------------------------------
Confidence 9999999999988643 4445555556554442100 0
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCce
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQ 360 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 360 (803)
.+....+..++.+.+.|.+ +.|.+.+.|++++..+..........++
T Consensus 123 -----------------------------~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~-- 171 (313)
T 4fqp_A 123 -----------------------------EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG-- 171 (313)
T ss_dssp -----------------------------EECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTT--
T ss_pred -----------------------------cccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccc--
Confidence 0011223457778889987 7899999999998877653322111111
Q ss_pred eEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEE
Q psy2776 361 RKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440 (803)
Q Consensus 361 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 440 (803)
.|.. ...|.|.+...+|.|.|+|
T Consensus 172 --------------~~~~-------------------------------------------~s~l~i~~~~~~d~g~Y~C 194 (313)
T 4fqp_A 172 --------------TVTV-------------------------------------------TSLWILVPSSQVDGKNVTC 194 (313)
T ss_dssp --------------CEEE-------------------------------------------EEEEEECCCGGGTTCEEEE
T ss_pred --------------cccc-------------------------------------------ceeeeecccccccCeeEEE
Confidence 1110 1247888889999999999
Q ss_pred EeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEE
Q psy2776 441 KATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRL 520 (803)
Q Consensus 441 ~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v 520 (803)
.|.|..+...... .+.|.|..+|.+. ........+
T Consensus 195 ~a~n~~~~~~~~~----------------------------------------~~~l~V~~~P~v~-----~~~~~~~~~ 229 (313)
T 4fqp_A 195 KVEHESFEKPQLL----------------------------------------TVNLTVYYPPEVS-----ISGYDNNWY 229 (313)
T ss_dssp EEECTTSSSCEEE----------------------------------------EEECCBCEEEEEE-----EECCCSCEE
T ss_pred EEEccCcCcccee----------------------------------------eeecccccCCccc-----cccccceee
Confidence 9999876655432 4555666666421 112234556
Q ss_pred eecceeEEEEEEcCcCCC-eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 521 SVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
..|+.+.|.|.+.|+|.| .++|+|+|..+..... . .+.+|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 230 ~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~---~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 303 (313)
T 4fqp_A 230 LGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAV---A---QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK 303 (313)
T ss_dssp TTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE---E---ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCCCeEEEEEEecCCCCCcEEEEEECCEECCCceE---E---eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 778999999999999998 6999999998875421 1 13579999999999999999999999999999999998
Q ss_pred eeE
Q psy2776 600 GYI 602 (803)
Q Consensus 600 ~~p 602 (803)
..|
T Consensus 304 ~~P 306 (313)
T 4fqp_A 304 EGP 306 (313)
T ss_dssp CCC
T ss_pred eCC
Confidence 665
No 65
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.96 E-value=6.9e-28 Score=251.64 Aligned_cols=273 Identities=17% Similarity=0.213 Sum_probs=190.2
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
.+|.+...+....+.+|+.+.|.|.+.+ .+.|++++.... ..........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 76 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA 76 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--EECCCSSCCEEEESSCCGGGCEEEEEECCC----
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--EEeccCCccEEEEeeeccccCEEEEEEEeccCCc
Confidence 4677777778888999999999999987 499998764322 2233455678999999999999999999999888
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
...++.|.|...+..
T Consensus 77 ~~~~~~l~V~~~~~~----------------------------------------------------------------- 91 (289)
T 3ejj_X 77 GSTTIHLYVKDPAHS----------------------------------------------------------------- 91 (289)
T ss_dssp -CEEEEEEECCSSCS-----------------------------------------------------------------
T ss_pred ceeEEEEEEeCCCcc-----------------------------------------------------------------
Confidence 777888888765311
Q ss_pred CccccccccCCceeeeccccceeEEEEe-cCCcee-eEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ-VKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~-i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
+...+....+.+|+.+.|.|.+ +.+.+. +.|++ ++..+....++.+..++
T Consensus 92 ------~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--------------------- 144 (289)
T 3ejj_X 92 ------WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--------------------- 144 (289)
T ss_dssp ------EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTT---------------------
T ss_pred ------eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCC---------------------
Confidence 1112234456679999999999 555544 99986 67666554444332222
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee-CCceeeeeecccCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT-NEAGTAETRTMWPGL 458 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-~~~g~~~~~~~~~~~ 458 (803)
.|.|.+++.+|+|.|+|.|. +..+....
T Consensus 145 --------------------------------------------~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~------- 173 (289)
T 3ejj_X 145 --------------------------------------------GFIIRKAKVLDSNTYVCKTMVNGRESTST------- 173 (289)
T ss_dssp --------------------------------------------EEEESSCCGGGCEEEEEEEEETTEEEECC-------
T ss_pred --------------------------------------------CEEEeecccccCEEEEEEEEeCCCccccc-------
Confidence 38888899999999999998 43333332
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcC-cC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FP 536 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p 536 (803)
.+.|.|...+ ..|.+... .....+.+|+.+.|.|.+.+ .|
T Consensus 174 -----------------------------------~~~l~V~~~~~~~p~i~~~---~~~~~~~~g~~~~l~C~~~~~~p 215 (289)
T 3ejj_X 174 -----------------------------------GIWLKVNRVHPEPPQIKLE---PSKLVRIRGEAAQIVCSATNAEV 215 (289)
T ss_dssp -----------------------------------CEEEEEESSCCCCCEEEEE---SSSEECCSSSCEEEEEEEEESSS
T ss_pred -----------------------------------cEEEEEEECCCCCCeEEec---CCceEEEeCCcEEEEEEeCCCCC
Confidence 3344443211 11222211 12455678999999999998 78
Q ss_pred CCeeEEeeCCeeecCCCcEEEEe--cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 537 RPEISWMKNGAEITDSKACRIFI--DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 537 ~~~v~W~~~g~~i~~~~~~~~~~--~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.+.|+++|..+.......... ....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.+...+
T Consensus 216 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp CCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred ceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 89999999999887643322111 1125789999999999999999999999999999999987654
No 66
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.96 E-value=6.4e-29 Score=263.13 Aligned_cols=270 Identities=19% Similarity=0.230 Sum_probs=189.6
Q ss_pred cCeeeecCCcEEEEEEECccC-CCeeEEEEcCeecc-----ceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP-TPDIKWYKDDSLIK-----GRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p-~p~i~W~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
..+.+.+|+.+.|.|.+.+.| .+.+.|+|++..+. ..++...+ ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~ 90 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRI 90 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECS--SBEECTTCCGGGCSCCEECCCSSSCCCCE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccC--CeEEECCCChhhCEEEEEEEeCCceEEEE
Confidence 356788999999999999877 78999999986432 22333332 47999999999999999999999887665
Q ss_pred EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcc
Q psy2776 226 SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305 (803)
Q Consensus 226 s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (803)
...+.+...+ |.
T Consensus 91 ~~~v~v~~~~--------------------------------------------------------------------p~ 102 (315)
T 1itb_B 91 KISAKFVENE--------------------------------------------------------------------PN 102 (315)
T ss_dssp ECCCEEECCC--------------------------------------------------------------------TT
T ss_pred EEEEEEeCCC--------------------------------------------------------------------CC
Confidence 5555443321 11
Q ss_pred ccccccCCceeeeccccceeEEEEe-------cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-------SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-------~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
..+.........+..|+.+.|.|.+ +.|.+.+.|+|+|.++..+.......
T Consensus 103 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~---------------------- 160 (315)
T 1itb_B 103 LCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---------------------- 160 (315)
T ss_dssp SSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE----------------------
T ss_pred cccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec----------------------
Confidence 1111111123445679999999985 68889999999998886432211111
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee-CCceeeeeecccCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT-NEAGTAETRTMWPG 457 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-~~~g~~~~~~~~~~ 457 (803)
...|.|.+++.+|+|.|+|.|. |..|.......
T Consensus 161 -------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~--- 194 (315)
T 1itb_B 161 -------------------------------------------KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR--- 194 (315)
T ss_dssp -------------------------------------------TTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEE---
T ss_pred -------------------------------------------CceEEEEeceehhCcEEEEEEEcCCCCcEEEEEE---
Confidence 1148888899999999999999 67766643210
Q ss_pred CCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC-----CCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ-----SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 458 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
.+.+.+. .+|.+ .........+.+|+.+.|.|.+
T Consensus 195 ------------------------------------~~~~~~~~~~~~~~P~~-----~~~~~~~~~~~~g~~v~l~C~~ 233 (315)
T 1itb_B 195 ------------------------------------VIEFITLEENKPTRPVI-----VSPANETMEVDLGSQIQLICNV 233 (315)
T ss_dssp ------------------------------------EEEEEEECCCCCCCCEE-----CSCCSEEEECCSSSCEEEEEEE
T ss_pred ------------------------------------EEEEEEecCCCCCCCEE-----ecCCCCcEEEeCCCcEEEEEEE
Confidence 1111111 22221 1111112467899999999999
Q ss_pred cCcCCCeeEEeeCCeeecCCCcEEE----Eec--------CCeEEEEEeeeccCc-CeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 533 FGFPRPEISWMKNGAEITDSKACRI----FID--------EETSTIAIYSVVRAD-TSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 533 ~g~p~~~v~W~~~g~~i~~~~~~~~----~~~--------~~~~~L~i~~v~~~d-sG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.|.|.|.+.|+++|..+........ ... ...+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus 234 ~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 234 TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 9999999999999999887543211 111 124589999999999 999999999999999999999874
Q ss_pred e
Q psy2776 600 G 600 (803)
Q Consensus 600 ~ 600 (803)
.
T Consensus 314 ~ 314 (315)
T 1itb_B 314 V 314 (315)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.96 E-value=1.4e-29 Score=270.68 Aligned_cols=295 Identities=22% Similarity=0.321 Sum_probs=134.4
Q ss_pred CcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccce-eEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCT 228 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 228 (803)
+.+..+.+|+.+.|.|.+.+. |.+.+.|+|++..+... ++.. ....|.|.+++.+|+|.|+|.+.|. |.....+.
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~ 91 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV--GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS 91 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe--ccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence 677889999999999999976 67899999999877543 2222 3468999999999999999999998 77666777
Q ss_pred EEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccc
Q psy2776 229 LLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEF 308 (803)
Q Consensus 229 l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (803)
|.|...+....... .... . +.. .. ....+.+
T Consensus 92 l~V~~~~~~~~~~~--~~~~---------------~-------------------------~~~-----~~--~~~~p~~ 122 (334)
T 1ry7_B 92 VRVTDAPSSGDDED--GEDE---------------A-------------------------EDT-----GV--DTGAPYW 122 (334)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred EEEeccCccccccc--cccc---------------c-------------------------ccc-----cc--cCCCCEE
Confidence 77765531110000 0000 0 000 00 0000111
Q ss_pred ccc---CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 309 LSK---LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 309 ~~~---~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
... .+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....+...
T Consensus 123 ~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~------------------------------ 172 (334)
T 1ry7_B 123 TRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG------------------------------ 172 (334)
T ss_dssp SCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC------------------------------
T ss_pred eccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc------------------------------
Confidence 111 1223566789999999999 899999999999988765432100
Q ss_pred cceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEE
Q psy2776 385 SVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVV 464 (803)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v 464 (803)
.....+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 173 -------------------------------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~------------- 208 (334)
T 1ry7_B 173 -------------------------------IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ------------- 208 (334)
T ss_dssp -------------------------------CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEE-------------
T ss_pred -------------------------------eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEE-------------
Confidence 011123346899999999999999999999887655
Q ss_pred eeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEe
Q psy2776 465 SLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWM 543 (803)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~ 543 (803)
.+.|.|...+ ..|.+. ........+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus 209 -----------------------------~~~l~V~~~~~~~p~~~--~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~ 257 (334)
T 1ry7_B 209 -----------------------------TYTLDVLERSPHRPILQ--AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257 (334)
T ss_dssp -----------------------------EEEEEEECCCCSSCBCC--TTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred -----------------------------EEEEEEecCCCCCCceE--ecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence 3333333321 111111 11113567889999999999999999999999
Q ss_pred e----CCeeecCCCcEE--EEe-------cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 544 K----NGAEITDSKACR--IFI-------DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 544 ~----~g~~i~~~~~~~--~~~-------~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
| +|..+..+.+.. +.. ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 258 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp ECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred ECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence 9 777776543211 111 1122489999999999999999999999999999999998754
No 68
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=249.86 Aligned_cols=243 Identities=17% Similarity=0.244 Sum_probs=180.1
Q ss_pred CceeeeccccceeEEEEe-cCCce-eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
|....+.+|+.+.|.|.+ +.|.+ .+.|+|+|..+....
T Consensus 8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~---------------------------------------- 47 (262)
T 3rjd_A 8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST---------------------------------------- 47 (262)
T ss_dssp SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------------------------------------
T ss_pred CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------------------------------------
Confidence 344556779999999999 77776 999999998876421
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
..|.|.+++.+|+|.|+|.+.|..+..
T Consensus 48 --------------------------------~~l~i~~~~~~d~G~Y~C~~~~~~~s~--------------------- 74 (262)
T 3rjd_A 48 --------------------------------PSYRITSASVNDSGEYRCQRGLSGRSD--------------------- 74 (262)
T ss_dssp --------------------------------SEEEESSCCGGGCEEEEEEESSSCCCC---------------------
T ss_pred --------------------------------CeEEEecCCcccCeEEEEEEecCCccc---------------------
Confidence 137778888899999999998754332
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEI 549 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i 549 (803)
.+.|.|..+|.. . ......+.+|+.+.|.|.+ .+.|.+.+.|+++|..+
T Consensus 75 -----------------------~~~l~v~~~~~~----~---~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~ 124 (262)
T 3rjd_A 75 -----------------------PIQLEIHRGWLL----L---QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124 (262)
T ss_dssp -----------------------CEEEEEECSSEE----E---EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE
T ss_pred -----------------------cEEEEEeccceE----e---cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccc
Confidence 222333333211 1 1123567889999999999 77788999999999887
Q ss_pred cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 550 TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 550 ~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
... .....|.|.++..+|+|.|+|.|.|..+..+..+.|.|...+
T Consensus 125 ~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~--------------------------- 169 (262)
T 3rjd_A 125 KFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF--------------------------- 169 (262)
T ss_dssp EEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS---------------------------
T ss_pred ccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC---------------------------
Confidence 532 124679999999999999999999999888888888886531
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-Cc----e
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PS----I 704 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~----v 704 (803)
.+|.+...+ ...+.+|+.+.|.|.+.|.|. |. +
T Consensus 170 -----------------------------------------~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~ 207 (262)
T 3rjd_A 170 -----------------------------------------PAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYF 207 (262)
T ss_dssp -----------------------------------------CCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEE
T ss_pred -----------------------------------------CCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEE
Confidence 144444443 566889999999999999886 53 7
Q ss_pred EEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 705 VWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 705 ~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
.|++++..+.. ......|.|.++ +.+|+|.|+|.|.|..|.. ..+..+.|.
T Consensus 208 ~w~~~~~~~~~--------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~ 259 (262)
T 3rjd_A 208 SFYMGSKTLRG--------RNTSSEYQILTA-RREDSGLYWCEAATEDGNVLKRSPELELQ 259 (262)
T ss_dssp EEEETTEEEEE--------EESCCEEEESSC-CGGGCEEEEEEEEETTSSCEEECCCEEEC
T ss_pred EEEeCCcEecc--------cCCCceEEEEEe-chhhCeEEEEEEEcccCceEEecCCeEEE
Confidence 89999988742 123457999999 7999999999999999975 334444443
No 69
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=262.55 Aligned_cols=269 Identities=17% Similarity=0.218 Sum_probs=190.8
Q ss_pred CeeeecCCcEEEEEEECc-cCCCeeEEEEcCeeccc------------------eeEEEe---cCeeEEEEecCCCCcce
Q psy2776 153 DSVAGFQSSVTLECVVSG-VPTPDIKWYKDDSLIKG------------------RNITYE---NNVARFTVVNCSESSEG 210 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g-~p~p~i~W~~~~~~~~~------------------~~~~~~---~~~~~L~i~~v~~~d~G 210 (803)
++.+.+|++++|.|.+.+ .+.+.+.|+|++..... .++... .+..+|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 567889999999999875 44457999996543211 111111 13457999999999999
Q ss_pred EEEEEEEcC-CcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 211 RYTCKATNE-AGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 211 ~Y~C~a~n~-~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|+|.|.|. .|.......+.+...+..
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~---------------------------------------------------- 115 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTV---------------------------------------------------- 115 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEE----------------------------------------------------
T ss_pred EEEEEEeeCCCcceeeeeEEEeeecccc----------------------------------------------------
Confidence 999999986 455555666666654210
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEee
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 367 (803)
.+ ...+.......|+.+.|.|.+ +.|.+.+.|++++.++...... ..++.
T Consensus 116 -----------------~~-~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~--~~~~~-------- 167 (308)
T 4fom_A 116 -----------------SL-IKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTS--FPNET-------- 167 (308)
T ss_dssp -----------------EE-EECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEE--CTTSC--------
T ss_pred -----------------cc-ccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccce--eeeec--------
Confidence 00 011222334458889999986 7999999999998887643211 00000
Q ss_pred cCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCce
Q psy2776 368 VTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 447 (803)
Q Consensus 368 ~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g 447 (803)
......|.|.++..+|.|.|+|.|.|..+
T Consensus 168 ---------------------------------------------------~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 196 (308)
T 4fom_A 168 ---------------------------------------------------ATIISQYKLFPTRFARGRRITCVVKHPAL 196 (308)
T ss_dssp ---------------------------------------------------EEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred ---------------------------------------------------ccccccceEEeeeecCCccEEEEEEccCC
Confidence 01123588899999999999999999877
Q ss_pred eeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeE
Q psy2776 448 TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWK 527 (803)
Q Consensus 448 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~ 527 (803)
....+. .+.|.|..+|.+... ......+..|+.+.
T Consensus 197 ~~~~~~----------------------------------------~~~l~V~~~P~~~~~-----~~~~~~~~~g~~v~ 231 (308)
T 4fom_A 197 EKDIRY----------------------------------------SFILDIQYAPEVSVT-----GYDGNWFVGRKGVN 231 (308)
T ss_dssp SSCEEE----------------------------------------EEECCCCEEEEECCB-----CCCSCEETTCCSCE
T ss_pred CCceEE----------------------------------------eEEEEEecCCeeEEc-----ccceeeeeccccEE
Confidence 665532 445556555543211 12245567789999
Q ss_pred EEEEEcCcCCC-eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 528 VEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 528 l~C~~~g~p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
|.|.+.|.|+| .+.|+|++..+..... ..++..|.|.+++.+|+|.|+|.|+|..|..+.++.|.|..+|
T Consensus 232 l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 232 LKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp EECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 99999999998 6999999988865421 2345678889999999999999999999999999999999988
No 70
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.96 E-value=1.2e-28 Score=265.14 Aligned_cols=274 Identities=18% Similarity=0.202 Sum_probs=164.1
Q ss_pred CcCeeeecCCcEEEEEEECccCC-----------CeeEEEEcCee------cc----ceeEEEecCeeEEEEecCCCCcc
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPT-----------PDIKWYKDDSL------IK----GRNITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~-----------p~i~W~~~~~~------~~----~~~~~~~~~~~~L~i~~v~~~d~ 209 (803)
..++.+.+|+.+.|.|.+.+.|. +.+.|+|++.. +. ..++... ...|.|.+++.+|+
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~D~ 91 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE--KDVLWFRPTLLNDT 91 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE--TTEEEESSCCGGGC
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec--CCEEEEccCChhhC
Confidence 56678899999999999997654 89999998842 11 1222222 34799999999999
Q ss_pred eEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 210 GRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
|.|+|.|.|..+....++.|.|...+.....
T Consensus 92 G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~------------------------------------------------- 122 (349)
T 4dep_C 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS------------------------------------------------- 122 (349)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTSCC-------------------------------------------------
T ss_pred EEEEEEEecCCceEEEEEEEEEecCCcccCc-------------------------------------------------
Confidence 9999999999888888888888765311100
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEE------ecCCceeeEEeecCeeccccceeEEEEcCceeEE
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE------LSSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~------~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l 363 (803)
....+....+.+|+.+.|.|. .+.|.+.+.|+|+|.++.....+ ..+
T Consensus 123 -------------------~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~--~~~------ 175 (349)
T 4dep_C 123 -------------------PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV--IPE------ 175 (349)
T ss_dssp -------------------SCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSE--EEE------
T ss_pred -------------------ccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccce--eec------
Confidence 001133445667999999997 36899999999999888543221 111
Q ss_pred EEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 443 (803)
...|.|.+++.+|+|.|+|.|.
T Consensus 176 ----------------------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~ 197 (349)
T 4dep_C 176 ----------------------------------------------------------GMNLSFLIALISNNGNYTCVVT 197 (349)
T ss_dssp ----------------------------------------------------------TTEEEEESCCGGGCEEEEEEEE
T ss_pred ----------------------------------------------------------CCEEEEeeeeecCCcEEEEEEE
Confidence 1348899999999999999999
Q ss_pred CCc-eeee-eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc--eE
Q psy2776 444 NEA-GTAE-TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS--QR 519 (803)
Q Consensus 444 ~~~-g~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~--~~ 519 (803)
|.. |... .+. .+.|.+..++.....+....+... ..
T Consensus 198 n~~~g~~~~~~~----------------------------------------~~~l~v~~~~~~~~~p~i~~~~~~~~~~ 237 (349)
T 4dep_C 198 YPENGRTFHLTR----------------------------------------TLTVKVVGSPKNAVPPVIHSPNDHVVYE 237 (349)
T ss_dssp EEETTEEEEEEE----------------------------------------EEEEEEECCGGGCCSCEEC---------
T ss_pred EeeCCEEEEEEE----------------------------------------EEEEEEEccCCCCCCCeEecCCCceeEE
Confidence 986 4331 111 333333332110000011111111 26
Q ss_pred EeecceeEEEEEEc----CcCCCeeEEeeCCeeecC-CCcEEEEe-----c-C---CeEEEEEeeeccCcC-eEEEEEEE
Q psy2776 520 LSVKSQWKVEVKYF----GFPRPEISWMKNGAEITD-SKACRIFI-----D-E---ETSTIAIYSVVRADT-STYTVTAT 584 (803)
Q Consensus 520 v~~g~~v~l~C~~~----g~p~~~v~W~~~g~~i~~-~~~~~~~~-----~-~---~~~~L~i~~v~~~ds-G~Y~C~a~ 584 (803)
+.+|+.+.|.|.+. |.|.|.+.|+++|..+.. ..++.+.. . . ..++|.|.++..+|+ |.|+|.|.
T Consensus 238 v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~ 317 (349)
T 4dep_C 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317 (349)
T ss_dssp -------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEE
T ss_pred EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEE
Confidence 78899999999998 678899999999998876 22222110 0 1 135699999999999 99999999
Q ss_pred cCCCCeEEEEEEEEee
Q psy2776 585 NAAGSTSLDLSLQVLG 600 (803)
Q Consensus 585 n~~g~~s~s~~l~V~~ 600 (803)
|..|....++.|.|..
T Consensus 318 N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 318 SAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CSSCEEEEECC-----
T ss_pred cCCCcEEEEEEEeeec
Confidence 9999999999999876
No 71
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.95 E-value=9.9e-29 Score=260.76 Aligned_cols=220 Identities=20% Similarity=0.232 Sum_probs=155.8
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCC-ceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNE-AGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~-~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+..+|+|.+++.+|+|.|+|.|.+. .|.... ...+.+
T Consensus 72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~------------------------------------------~~~~~v 109 (308)
T 4fom_A 72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQS------------------------------------------STTVTV 109 (308)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEETTTEEEEE------------------------------------------EEEEEE
T ss_pred CceEEEEccCCHHHCEEEEEEEeeCCCcceee------------------------------------------eeEEEe
Confidence 3456999999999999999999875 344333 222333
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecC---CeEEEEEeeeccCc
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDE---ETSTIAIYSVVRAD 575 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v~~~d 575 (803)
..+|..+.+. .........|+.+.|.|.+ .|.|.+.+.|++++..+...... .... ..+.|.|.++..+|
T Consensus 110 ~~~~~~~~~~----~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~--~~~~~~~~~s~l~i~~~~~~d 183 (308)
T 4fom_A 110 LVEPTVSLIK----GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTS--FPNETATIISQYKLFPTRFAR 183 (308)
T ss_dssp EBCCEEEEEE----CSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEE--CTTSCEEEEEEEEECCCGGGT
T ss_pred eecccccccc----ccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccce--eeeecccccccceEEeeeecC
Confidence 3333221111 1112334568899999985 68999999999999877543110 0011 13579999999999
Q ss_pred CeEEEEEEEcCCCCeEE--EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 576 TSTYTVTATNAAGSTSL--DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~--s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|+|.|.|..|.... ++.|.|..+|
T Consensus 184 ~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P--------------------------------------------------- 212 (308)
T 4fom_A 184 GRRITCVVKHPALEKDIRYSFILDIQYAP--------------------------------------------------- 212 (308)
T ss_dssp TCEEEEEEECTTCSSCEEEEEECCCCEEE---------------------------------------------------
T ss_pred CccEEEEEEccCCCCceEEeEEEEEecCC---------------------------------------------------
Confidence 99999999998777544 4445554433
Q ss_pred cceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILE 731 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~ 731 (803)
.+... .....+..|+.++|.|.+.|.|.| .+.|+|++..+..... ......|.
T Consensus 213 --------------------~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~ 267 (308)
T 4fom_A 213 --------------------EVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHF 267 (308)
T ss_dssp --------------------EECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEEC
T ss_pred --------------------eeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEE
Confidence 23222 223456778999999999999998 6999999988755422 12334677
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.++ +.+|+|.|+|.|.|.+|..+.++.|.|..
T Consensus 268 i~~v-~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 268 VHPL-TFNYSGVYICKVTNSLGQRSDQKVIYISD 300 (308)
T ss_dssp CSCC-CSCCCSEEEEEEEETTEEEEEEEECCEEC
T ss_pred ECCC-ChhhCEEEEEEEEeCCCcEEEEEEEEEEc
Confidence 8888 78999999999999999999999999864
No 72
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=259.54 Aligned_cols=290 Identities=14% Similarity=0.198 Sum_probs=180.5
Q ss_pred ccCCceeeeccccceeEEEEe-cC-CceeeEEeecCeeccccceeEEEE-cCc-eeEEEEeecCCCCCccEEEEEecccc
Q psy2776 310 SKLPSVTLVPHLGDATFQVEL-SS-PDIQVKWLKKGKEIKESARHIITS-RGT-QRKLVIKRVTQDDETDIGVLALNVKS 385 (803)
Q Consensus 310 ~~~~~~~~~~~g~~~~l~C~~-~~-p~~~i~W~~~g~~l~~~~~~~~~~-~~~-~~~l~i~~~~~~d~g~y~c~~~~~~~ 385 (803)
...|....+.+|+++.|.|.+ +. |.+.+.|+|++.++.. .+.. .+. ..++.+
T Consensus 7 ~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~----~i~~~~~~~~~r~~~-------------------- 62 (327)
T 2wng_A 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARE----LIYNQKEGHFPRVTT-------------------- 62 (327)
T ss_dssp ECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCE----EEEETTSSCCTTEEE--------------------
T ss_pred EcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCce----EEEEcCCCCcceeee--------------------
Confidence 344566777889999999999 65 8899999998754321 1110 000 000000
Q ss_pred ceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEe
Q psy2776 386 VSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465 (803)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~ 465 (803)
.........+...|.|.+++.+|+|.|+|.|.|..+......
T Consensus 63 --------------------------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~------------ 104 (327)
T 2wng_A 63 --------------------------VSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFK------------ 104 (327)
T ss_dssp --------------------------CC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEE------------
T ss_pred --------------------------ecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEe------------
Confidence 000000113345699999999999999999999765321100
Q ss_pred eeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEe
Q psy2776 466 LRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWM 543 (803)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~ 543 (803)
.+....|.|..+|..|.+. . ....+.+|+.+.|.|.+.|.|++ .+.|+
T Consensus 105 -------------------------~~~~~~l~V~~~p~~p~i~---~--~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~ 154 (327)
T 2wng_A 105 -------------------------SGAGTELSVRAKPSAPVVS---G--PAARATPQHTVSFTCESHGFSPRDITLKWF 154 (327)
T ss_dssp -------------------------ECCCEEEEEEBCCCCCEEE---C--CSSCBCTTCEEEEEEEEEEEBSSCCEEEEE
T ss_pred -------------------------ecCcEEEEEEecCCCceee---c--cccccCCCCEEEEEEEEeCccCCCcEEEEE
Confidence 0013455666666554432 1 12456889999999999998876 89999
Q ss_pred eCCeeecCCCcEEEEecC-C----eEEEEEeeeccCcCeEEEEEEEcCCCCe---EEEEEEEEeeeEeEeeecccccEEE
Q psy2776 544 KNGAEITDSKACRIFIDE-E----TSTIAIYSVVRADTSTYTVTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTK 615 (803)
Q Consensus 544 ~~g~~i~~~~~~~~~~~~-~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~ 615 (803)
++|..+............ + .+.|.|.....+|.|.|+|.|.|..|.. ..+..+.+..
T Consensus 155 k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v--------------- 219 (327)
T 2wng_A 155 KNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETI--------------- 219 (327)
T ss_dssp ETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTB---------------
T ss_pred ECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEecccc---------------
Confidence 999988754321111111 1 2468888777777899999999987763 2233322111
Q ss_pred eeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEE
Q psy2776 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695 (803)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~ 695 (803)
..+|.+...+.. +.+|+.+.|.|.
T Consensus 220 ------------------------------------------------------~~~P~i~~~~~~--~~~G~~v~l~C~ 243 (327)
T 2wng_A 220 ------------------------------------------------------RVPPTLEVTQQP--VRAENQVNVTCQ 243 (327)
T ss_dssp ------------------------------------------------------CBCCEEEEEEEC--CSSTTCCEEEEE
T ss_pred ------------------------------------------------------CCCCEEEEecCC--cCCCCcEEEEEE
Confidence 125666555444 788999999999
Q ss_pred EeecCCC--ceEEeeCCeeccCCCCeEEEe--eCc---eEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEE
Q psy2776 696 VKASPAP--SIVWFRNNKPLLSSPKKREIF--DGE---NIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763 (803)
Q Consensus 696 ~~g~p~~--~v~W~~~~~~l~~~~~~~~~~--~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 763 (803)
+.|.|++ .+.|++||.++..+....+.. ++. ...|.|..+ ..+|+|.|+|.|.|..|.. +.++.+.+
T Consensus 244 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~~~ 318 (327)
T 2wng_A 244 VRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVS-AHRDDVKLTCQVEHDGQPAVSKSHDLKV 318 (327)
T ss_dssp EEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC--------CCEEEEEEEETTCCCEEEEEECC-
T ss_pred EccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccc-cccCCCEEEEEEEeCCCCCchhheEEEe
Confidence 9996444 799999999886432221222 222 256889888 6899999999999999875 55555544
No 73
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=243.86 Aligned_cols=240 Identities=15% Similarity=0.225 Sum_probs=178.3
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
|.|...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.+.|..+..
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s~ 74 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRSD 74 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCccc
Confidence 667777888889999999999999998888 89999999887543 3579999999999999999999865543
Q ss_pred eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCC
Q psy2776 224 ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKST 303 (803)
Q Consensus 224 ~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (803)
.+.|.|...+. ..
T Consensus 75 --~~~l~v~~~~~-------~~---------------------------------------------------------- 87 (262)
T 3rjd_A 75 --PIQLEIHRGWL-------LL---------------------------------------------------------- 87 (262)
T ss_dssp --CEEEEEECSSE-------EE----------------------------------------------------------
T ss_pred --cEEEEEeccce-------Ee----------------------------------------------------------
Confidence 45555543310 00
Q ss_pred ccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....
T Consensus 88 --------~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------------------------------- 128 (262)
T 3rjd_A 88 --------QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------------------------------- 128 (262)
T ss_dssp --------EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------------------------
T ss_pred --------cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC-------------------------------
Confidence 0112334569999999999 57889999999988774311
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
....|.|.+++.+|+|.|+|.+.|..+....
T Consensus 129 ---------------------------------------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~---------- 159 (262)
T 3rjd_A 129 ---------------------------------------WNSNLTILKTNISHNGTYHCSGMGKHRYTSA---------- 159 (262)
T ss_dssp ---------------------------------------ECCCEEESSCCGGGCEEEEEEEESSSEEEEE----------
T ss_pred ---------------------------------------CCCeEEEEECChhhCEEEEEEEeCCCCcccc----------
Confidence 0123788889999999999999998865554
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-Ce-
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-PE- 539 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~- 539 (803)
.+.|.|..++..|.+... ....+.+|+.+.|.|.+.+.|. +.
T Consensus 160 --------------------------------~~~l~V~~~~~~p~~~~~----~~~~~~~g~~~~l~C~~~~~p~~p~~ 203 (262)
T 3rjd_A 160 --------------------------------GISVTVKELFPAPVLNAS----VTSPLLEGNLVTLSCETKLLLQRPGL 203 (262)
T ss_dssp --------------------------------CEEEEEECSSCCCEEEES----SCSSEETTCCEEEEEECCCCCC----
T ss_pred --------------------------------ceEEEeccCCCCCeEeec----CceeecCCCeEEEEeEcccCCCCCCc
Confidence 334444443222222211 1345788999999999999886 43
Q ss_pred ---eEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 540 ---ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 540 ---v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.|++++..+... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 204 ~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 204 QLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp -EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 6799999877531 245689999999999999999999999975
No 74
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.95 E-value=9.3e-28 Score=255.83 Aligned_cols=268 Identities=12% Similarity=0.114 Sum_probs=188.0
Q ss_pred cCeeeecCCcEEEEEEECcc---------CCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcce-EEEEEEEcCCc
Q psy2776 152 KDSVAGFQSSVTLECVVSGV---------PTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAG 221 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~---------p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g 221 (803)
..+.+.+|+.+.|.|.+.+. |.+.+.|+|++..+....... ....|.|.+++.+|+| .|+|.|.|..|
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~--~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV--KNGDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTE--ETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCcee--ecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 56678899999999999874 557899999997654321112 2457999999999999 99999999998
Q ss_pred CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccC
Q psy2776 222 TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESK 301 (803)
Q Consensus 222 ~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (803)
.......+.|...+. .
T Consensus 115 ~~~~~~~~~v~~~~p----~------------------------------------------------------------ 130 (329)
T 3oq3_B 115 DCVQGIVRSHIRKPP----S------------------------------------------------------------ 130 (329)
T ss_dssp CEEEEEEEEEECCCC----S------------------------------------------------------------
T ss_pred ceeeEEEEEEEcCCC----c------------------------------------------------------------
Confidence 755444333332210 0
Q ss_pred CCccccccccCCceeeeccccceeEEEEe-cCC-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 302 STPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
++. .+....+.+|+.+.|.|.+ +.| .+.+.|+|+|..+..........
T Consensus 131 ------~~~-~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~----------------------- 180 (329)
T 3oq3_B 131 ------CIP-ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS----------------------- 180 (329)
T ss_dssp ------CEE-EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-----------------------
T ss_pred ------Eec-cccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-----------------------
Confidence 000 0011223569999999999 888 89999999998885322111111
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCC--ceeeeeecccCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNE--AGTAETRTMWPG 457 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~--~g~~~~~~~~~~ 457 (803)
...|.|.+++.+|+|.|+|.|.|. .|.......
T Consensus 181 ------------------------------------------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s--- 215 (329)
T 3oq3_B 181 ------------------------------------------GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS--- 215 (329)
T ss_dssp ------------------------------------------TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEE---
T ss_pred ------------------------------------------CCEEEEeecChhhCEEEEEEEEecccCCCceeEEE---
Confidence 124888999999999999999986 554443210
Q ss_pred CCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC-
Q psy2776 458 LPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP- 536 (803)
Q Consensus 458 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p- 536 (803)
..+.|.|..+|......+ .+....+.+|+.+.|.|.+.|.|
T Consensus 216 -----------------------------------~~~~l~V~~~~~~~~~~~---~~~~~~v~~G~~~~l~C~~~g~p~ 257 (329)
T 3oq3_B 216 -----------------------------------RCKILTVIPSQDHRFKLI---LDPKINVTIGEPANITCTAVSTSL 257 (329)
T ss_dssp -----------------------------------EEEEEEEECCCCCCEEEE---CCSEEEECTTSCEEEEEEEEETTC
T ss_pred -----------------------------------eeEEEEEECCCCCCCcee---cCCeeEEecCCCEEEEEEEEECCC
Confidence 134555555553322111 12347788999999999999998
Q ss_pred --CC-eeEEeeCCeee-cCCCcEEEE--ecC--CeEEEEEeeeccCcCe-EEEEEEEcCCCCeEEEEEEEE
Q psy2776 537 --RP-EISWMKNGAEI-TDSKACRIF--IDE--ETSTIAIYSVVRADTS-TYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 537 --~~-~v~W~~~g~~i-~~~~~~~~~--~~~--~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~s~s~~l~V 598 (803)
++ .+.|+++|..+ ..+.+.... ... ..+.|.|.++..+|+| .|+|.|.|..|..+.++.|.|
T Consensus 258 ~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 258 LVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp CTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred CCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 67 88999999884 333332221 111 3578999999999999 999999999999999988876
No 75
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=250.46 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=165.1
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|.|.+++.+|+|.|+|.+.|..|.... .+.|.|..
T Consensus 50 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~------------------------------------------~~~l~V~~ 87 (292)
T 4dkd_C 50 SSILSTNNATFQNTGTYRCTEPGDPLGGSA------------------------------------------AIHLYVKD 87 (292)
T ss_dssp EEEEEESSCCGGGCSCEEECCCC----CCE------------------------------------------EECCEECC
T ss_pred eEEEEEcccccccCEEEEEEEccCCCCcce------------------------------------------EEEEEEcC
Confidence 446889999999999999999998766544 55666666
Q ss_pred CCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
+|.... .......+.+|+.+.|.|.+.+ |. +.+.|+++ +..+....++.... ...|.|.++..+|+|.
T Consensus 88 ~~~~~~-----~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~ 158 (292)
T 4dkd_C 88 PARPWN-----VLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSP---WHGFTIHRAKFIQSQD 158 (292)
T ss_dssp SSCCEE-----ESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCS---SSCCEETTCCGGGCSE
T ss_pred cccccc-----ccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccC---CceEEECCCCHHHCeE
Confidence 664311 1223577889999999999998 54 78999997 55665554443322 2349999999999999
Q ss_pred EEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 579 YTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 579 Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|+|.|.|..|.. +..+.|.|...+
T Consensus 159 Y~C~a~n~~~~~~s~~~~l~V~~~~------------------------------------------------------- 183 (292)
T 4dkd_C 159 YQCSALMGGRKVMSISIRLKVQKVI------------------------------------------------------- 183 (292)
T ss_dssp EEEEECSTTSCEECCCEEEEEECCC-------------------------------------------------------
T ss_pred EEEEEEeCCCceeEEEEEEEEeCCC-------------------------------------------------------
Confidence 999999987765 346777775411
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeCCeeccCCCCeEEEee--CceEEEEEec
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRNNKPLLSSPKKREIFD--GENIILELKE 734 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~~~~l~~~~~~~~~~~--~~~~~L~i~~ 734 (803)
..+|.+...+....+.+|+.+.|.|.+.|.|+ +.+.|++++..+........... .....|.|.+
T Consensus 184 ------------~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 251 (292)
T 4dkd_C 184 ------------PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQ 251 (292)
T ss_dssp ------------CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESS
T ss_pred ------------CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECc
Confidence 12677777777777789999999999998775 46889999887754433222111 1345899999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
+ +.+|+|.|+|.|.|.+|..+.++.|.|.....
T Consensus 252 v-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~ 284 (292)
T 4dkd_C 252 V-DFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284 (292)
T ss_dssp C-CTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred c-ChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence 9 79999999999999999999999999875443
No 76
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.95 E-value=5.7e-29 Score=266.51 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=200.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEEC-------ccCCCeeEEEEcCeec--cce---eEEEecCeeEEEEecCCCCcc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVS-------GVPTPDIKWYKDDSLI--KGR---NITYENNVARFTVVNCSESSE 209 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~-------g~p~p~i~W~~~~~~~--~~~---~~~~~~~~~~L~i~~v~~~d~ 209 (803)
...|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+ ... ++.. ....|.|.+++.+|+
T Consensus 16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~ 93 (339)
T 3o4o_C 16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA--QDGALWLLPALQEDS 93 (339)
T ss_dssp --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE--ETTEEEESSBCTTCC
T ss_pred hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe--eCCeEEECCCCcccC
Confidence 3567888888999999999999999998 8899999999999873 322 3333 235799999999999
Q ss_pred eEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 210 GRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 210 G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
|.|+|.+.|..|....++.|.|...+....
T Consensus 94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~-------------------------------------------------- 123 (339)
T 3o4o_C 94 GTYVCTTRNASYCDKMSIELRVFENTDAFL-------------------------------------------------- 123 (339)
T ss_dssp EEEECCEEETTEEEEEEEEEEEECSCGGGH--------------------------------------------------
T ss_pred EEEEEEEECCcceEEEEEEEEEEcCCCccc--------------------------------------------------
Confidence 999999999998887888888876631110
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEE-----e-cCCceeeEEeecCeeccccceeEEEEcCceeEE
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVE-----L-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKL 363 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l 363 (803)
........+.+|+.+.|.|. + +.|.+.+.|+|+|..+........
T Consensus 124 --------------------~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~--------- 174 (339)
T 3o4o_C 124 --------------------PFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL--------- 174 (339)
T ss_dssp --------------------HHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE---------
T ss_pred --------------------cccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE---------
Confidence 00011224567999999999 6 789999999999988865422111
Q ss_pred EEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKAT 443 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 443 (803)
...+...|.|.+++.+|+|.|+|.|.
T Consensus 175 ------------------------------------------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~ 200 (339)
T 3o4o_C 175 ------------------------------------------------------SVRGTTHLLVHDVALEDAGYYRCVLT 200 (339)
T ss_dssp ------------------------------------------------------ECTTSSEEEESSCCGGGCEEEEEEEE
T ss_pred ------------------------------------------------------EcCCcceEEEcccCHhhCeEEEEEEE
Confidence 11122358899999999999999999
Q ss_pred CCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeec
Q psy2776 444 NEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVK 523 (803)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g 523 (803)
|..|....... ..+.|.|..++......+. .......+.+|
T Consensus 201 n~~g~~~~~~~--------------------------------------~~~~l~V~~~~~~~~P~i~-~~~~~~~v~~G 241 (339)
T 3o4o_C 201 FAHEGQQYNIT--------------------------------------RSIELRIKKKKEETIPVII-SPLKTISASLG 241 (339)
T ss_dssp CCBTTBCCEEE--------------------------------------EEEEEEEECCCCCCCCEEC-CCSCCCCCCCC
T ss_pred ECCCCeEEEEE--------------------------------------EEEEEEEEcCCCCCCCEEe-cCCceeEeccC
Confidence 98774322110 1333344332211111111 11234567889
Q ss_pred ceeEEEEEE---cCcC-CCeeEEeeCCeeecCC---------CcEEEEecCC---eEEEEEeeeccCcC-eEEEEEEEcC
Q psy2776 524 SQWKVEVKY---FGFP-RPEISWMKNGAEITDS---------KACRIFIDEE---TSTIAIYSVVRADT-STYTVTATNA 586 (803)
Q Consensus 524 ~~v~l~C~~---~g~p-~~~v~W~~~g~~i~~~---------~~~~~~~~~~---~~~L~i~~v~~~ds-G~Y~C~a~n~ 586 (803)
+.+.|.|.+ .|.| .+.+.|+++|..+... .+..+...+. .+.|.|.++..+|+ |.|+|.|.|.
T Consensus 242 ~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 321 (339)
T 3o4o_C 242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321 (339)
T ss_dssp SCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEec
Confidence 999999999 8999 7899999999876432 2222211211 23799999999998 9999999999
Q ss_pred CCCeEEEEEEEEee
Q psy2776 587 AGSTSLDLSLQVLG 600 (803)
Q Consensus 587 ~g~~s~s~~l~V~~ 600 (803)
.|..+..+.+.+..
T Consensus 322 ~G~~~~~~~~~~~~ 335 (339)
T 3o4o_C 322 LSFQTLRTTVKEHH 335 (339)
T ss_dssp TEEECCBCCCCC--
T ss_pred cCceEEEEEhhHhc
Confidence 99998887776643
No 77
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.95 E-value=8.6e-28 Score=256.32 Aligned_cols=221 Identities=19% Similarity=0.198 Sum_probs=161.7
Q ss_pred CeeEEEEEeccCCCceeEEEE-eeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCK-ATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~-a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+..+|.|.+++.+|+|.|+|. +.+..+.... .+.|.|
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~------------------------------------------~~~l~V 127 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRES------------------------------------------QLNLTV 127 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEEE------------------------------------------EEEEEE
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccEE------------------------------------------EEEEEE
Confidence 345699999999999999998 4555554443 445555
Q ss_pred CCCCCCccceeeeccccceEEeec---ceeEEEEE-EcCcCCCeeEEeeCCeeecCCCcEEEEecCC----eEEEEEeee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVK---SQWKVEVK-YFGFPRPEISWMKNGAEITDSKACRIFIDEE----TSTIAIYSV 571 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g---~~v~l~C~-~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v 571 (803)
..+|.+.. ........+.+| +.+.|.|. ..+.|.+.+.|++++...... .......+ .+.|.|.++
T Consensus 128 ~~~p~~~~----~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~ 201 (331)
T 3u83_A 128 MAKPTNWI----EGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY--QEIRNPNGTVTVISRYRLVPS 201 (331)
T ss_dssp EBCCEEEE----EECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE--EEEECTTSCEEEEEEEEECCC
T ss_pred ecCCccee----ecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc--ceeECCCCcEEEEEEEEEEec
Confidence 55554311 111234667778 78999998 889999999999963322110 01111111 257899999
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCC
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~ 651 (803)
..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 202 ~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P------------------------------------------------- 232 (331)
T 3u83_A 202 REAHQQSLACIVNYHMDRFKESLTLNVQYEP------------------------------------------------- 232 (331)
T ss_dssp GGGTTCEEEEEEEETTEEEEEEEECCEEEEE-------------------------------------------------
T ss_pred cccCCCEEEEEEecCCCcceeeEEEEEecCC-------------------------------------------------
Confidence 9999999999999999988888888887644
Q ss_pred CccceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccCCCCeEEEeeCceEE
Q psy2776 652 EATTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLSSPKKREIFDGENII 729 (803)
Q Consensus 652 ~s~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~~~~~~~~~~~~~~~ 729 (803)
.+. ..+....+.+|+.+.|.|.+.|.|.|. +.|++++..+..... ..+. +
T Consensus 233 ----------------------~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~----~~~~--~ 284 (331)
T 3u83_A 233 ----------------------EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVE----AQNR--T 284 (331)
T ss_dssp ----------------------EEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEE----EETT--E
T ss_pred ----------------------eEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccce----ecCc--E
Confidence 222 223344578899999999999999998 999999998855421 2233 6
Q ss_pred EEEe-cCCCCCCceeEEEEEEccCcceeeeEEEEEEeec
Q psy2776 730 LELK-EADSETDAGDYKVVATNELGSATHGARVTVDVEK 767 (803)
Q Consensus 730 L~i~-~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 767 (803)
|.|. ++ +.+|+|.|+|.|.|.+|..+.++.|.|....
T Consensus 285 L~i~~~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 322 (331)
T 3u83_A 285 LFFKGPI-NYSLAGTYICEATNPIGTRSGQVEVNITEAA 322 (331)
T ss_dssp EEECSCC-CGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred EEEeCCC-ccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence 9999 88 7899999999999999999999999986443
No 78
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=245.99 Aligned_cols=267 Identities=15% Similarity=0.186 Sum_probs=176.7
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecC--eeEEEEecCCCCcceEEEEEEEcCCcC-
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENN--VARFTVVNCSESSEGRYTCKATNEAGT- 222 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~- 222 (803)
.|.....+..+.+|+.+.|.|.+.+. +.|++++..+.........+ ..+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 2 ~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 77 (289)
T 3mjg_X 2 VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLE 77 (289)
T ss_dssp CBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----
T ss_pred eecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCC
Confidence 34445556788899999999999874 99999998875332222222 478999999999999999999998876
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
...+..+.|....
T Consensus 78 ~~~~~~~~v~v~~------------------------------------------------------------------- 90 (289)
T 3mjg_X 78 TDERKRLYIFVPD------------------------------------------------------------------- 90 (289)
T ss_dssp -CCCEEEEEECCC-------------------------------------------------------------------
T ss_pred cCcEEeEEEEEEC-------------------------------------------------------------------
Confidence 2233444444331
Q ss_pred CccccccccCCc--eeeeccccceeEEEEecCCceeeEEeecC--eeccccceeEEEEcCceeEEEEeecCCCCCccEEE
Q psy2776 303 TPAVEFLSKLPS--VTLVPHLGDATFQVELSSPDIQVKWLKKG--KEIKESARHIITSRGTQRKLVIKRVTQDDETDIGV 378 (803)
Q Consensus 303 ~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~p~~~i~W~~~g--~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 378 (803)
|...++...+. ...+.+|+.+.|.|.+..|.+.+.|++++ .++... . +
T Consensus 91 -p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~--~----~--------------------- 142 (289)
T 3mjg_X 91 -PTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVP--Y----D--------------------- 142 (289)
T ss_dssp -TTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCC--E----E---------------------
T ss_pred -CCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCcccee--e----c---------------------
Confidence 00011111111 14466799999999997777888888764 332210 0 0
Q ss_pred EEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCC
Q psy2776 379 LALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGL 458 (803)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~ 458 (803)
.... + +..+|+|.|+|.|.|..+.....
T Consensus 143 -----------------------------------------~~~~-~----~~~~d~G~Y~C~a~n~~~~~~s~------ 170 (289)
T 3mjg_X 143 -----------------------------------------HQRG-F----SGIFEDRSYICKTTIGDREVDSD------ 170 (289)
T ss_dssp -----------------------------------------TTTE-E----EECCCSSEEEEEEEETTEEEECC------
T ss_pred -----------------------------------------CCcC-e----eeeccCcEEEEEEEeCCceeeee------
Confidence 0000 1 12568999999999877665542
Q ss_pred CceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC
Q psy2776 459 PLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP 538 (803)
Q Consensus 459 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~ 538 (803)
.+.|.+..+ ..|.+.+.. ....+.+|+.+.|.|.+.|.|.+
T Consensus 171 -----------------------------------~~~l~v~~~-~~p~i~~~~---~~~~v~~G~~v~L~C~~~g~p~p 211 (289)
T 3mjg_X 171 -----------------------------------AYYVYRLQV-SSINVSVNA---VQTVVRQGENITLMCIVIGNEVV 211 (289)
T ss_dssp -----------------------------------CEEEEECCC-CCCCCEEEE---SCSEEETTSCEEEEEEEESCSSB
T ss_pred -----------------------------------eEEEEecCC-CCCCcEEeC---CcceeEcCCCEEEEEEECCCCCc
Confidence 223333331 111122211 23568899999999999999999
Q ss_pred eeEEeeCCeeecCCCcEEEEe-----cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 539 EISWMKNGAEITDSKACRIFI-----DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 539 ~v~W~~~g~~i~~~~~~~~~~-----~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.|++++............. ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+
T Consensus 212 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 212 NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp EEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred ceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 999998876544332211111 1235799999999999999999999999999999999998866
No 79
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.95 E-value=3.4e-27 Score=243.13 Aligned_cols=237 Identities=19% Similarity=0.213 Sum_probs=173.9
Q ss_pred eeccccceeEEEEe-c-CCce--eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 317 LVPHLGDATFQVEL-S-SPDI--QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~-~p~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
.+.+|+.+.|.|.+ + .|.+ .+.|+|+|..+.. .+...+.
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--------------------------------- 56 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGND--------------------------------- 56 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEECSS---------------------------------
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEeeCCC---------------------------------
Confidence 56789999999999 6 7776 9999999988764 1111111
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEE---eccCCCce--eEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVV---NCSESSEG--RYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G--~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
.|.+. .++.+|+| .|+|.+.|..|....
T Consensus 57 -------------------------------~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~---------------- 89 (265)
T 2oz4_A 57 -------------------------------SFSAKASVSVTAEDEGTQRLTCAVILGNQSQET---------------- 89 (265)
T ss_dssp -------------------------------EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEE----------------
T ss_pred -------------------------------eEEEEeecccccccCCcceEEEEEecCCCCcEE----------------
Confidence 13333 33667777 599999999887655
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCe
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~ 547 (803)
.+.|.|...|. +.+. .....+.+|+.+.|.|.+. |.+.+.| +|.
T Consensus 90 --------------------------~~~l~V~~~p~-p~~~-----~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~ 133 (265)
T 2oz4_A 90 --------------------------LQTVTIYSFPA-PNVI-----LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGV 133 (265)
T ss_dssp --------------------------EEEEEEECCCC-CEEE-----ESCSEEETTCEEEEEEECC--TTSEEEE--SSC
T ss_pred --------------------------EEEEEEeCCCC-ceee-----cCCceecCCCcEEEEEEcc--CCCEEEE--CCE
Confidence 44555554332 2221 1245688899999999998 8899999 787
Q ss_pred eecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC-CCeE---EEEEEEEeeeEeEeeecccccEEEeeeeCCcc
Q psy2776 548 EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA-GSTS---LDLSLQVLGYIIQQQEKNSLKFTKVATLDPST 623 (803)
Q Consensus 548 ~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g~~s---~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~ 623 (803)
.+... +..+.|.|..+..+|.|.|+|.|.|.. |... .++.|.|..+|
T Consensus 134 ~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p--------------------- 184 (265)
T 2oz4_A 134 PAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP--------------------- 184 (265)
T ss_dssp SSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE---------------------
T ss_pred EccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC---------------------
Confidence 76332 234678999999999999999998654 7765 77788887755
Q ss_pred ceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCc
Q psy2776 624 LQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS 703 (803)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~ 703 (803)
...+...+....+.+|+.+.|.|.+.|.|.|.
T Consensus 185 ------------------------------------------------~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~ 216 (265)
T 2oz4_A 185 ------------------------------------------------RLDERDCPGNWTWPENSQQTPMCQAWGNPLPE 216 (265)
T ss_dssp ------------------------------------------------ECCGGGSCSEEEEETTCEECCCCCCEEESCCE
T ss_pred ------------------------------------------------ccccccCCCccEEcCCCeEEEEeECccCCCCe
Confidence 11111223456788999999999999999999
Q ss_pred eEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 704 IVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 704 v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+.|+++|..+... +. +. .+ +.+|+|.|+|.|.|.+|.++.++.|.|.
T Consensus 217 i~W~~~~~~~~~~--------g~---~~--~v-~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 263 (265)
T 2oz4_A 217 LKCLKDGTFPLPI--------GE---SV--TV-TRDLEGTYLCRARSTQGEVTREVTVNVL 263 (265)
T ss_dssp EEEEETTTEECCT--------TS---CE--EC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCcccCCC--------Cc---EE--Ee-ehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence 9999998833222 22 21 25 6799999999999999999999999885
No 80
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.95 E-value=4e-27 Score=262.11 Aligned_cols=329 Identities=16% Similarity=0.197 Sum_probs=194.0
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccC-CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC-
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTG-PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP- 174 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~-~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p- 174 (803)
...|.|.+++.+|+|.|+|.+.+..+.. ..... ..+.+.... ..+|.+........+.+|+.+.|.|.+.|. |.|
T Consensus 78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~~l~V~~~~-~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~ 155 (444)
T 1igt_B 78 TLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQG-TTVTVSSAK-TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPV 155 (444)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCC-EEEEECSCC-CBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCC
T ss_pred eEEEEECCCCHHHCEEEEEEEecCCcccccccCc-EEEEecCCC-CCCCceeEecccccCCCCCcEEEEEEEcceeCCCc
Confidence 4689999999999999999999865431 01111 223333211 234544432223335789999999999984 776
Q ss_pred eeEEEEcCeeccce--eEEEec----CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeec
Q psy2776 175 DIKWYKDDSLIKGR--NITYEN----NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARG 248 (803)
Q Consensus 175 ~i~W~~~~~~~~~~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~ 248 (803)
.+.|++++..+... ...... ....|.|.++..+| |.|+|.|.|..+.......+.+.+.
T Consensus 156 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~-------------- 220 (444)
T 1igt_B 156 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGP-------------- 220 (444)
T ss_dssp EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCC--------------
T ss_pred EEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCC--------------
Confidence 89999998764211 000111 12569999999999 9999999999987654444433111
Q ss_pred ceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeecc-CCCccccccccCCceee-eccccceeE
Q psy2776 249 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFES-KSTPAVEFLSKLPSVTL-VPHLGDATF 326 (803)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~l 326 (803)
+.+.|... .+.. .....+.+....|.... +.+|+.+.|
T Consensus 221 ---------------~~~~~~~~-------------------------~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L 260 (444)
T 1igt_B 221 ---------------TIKPCPPC-------------------------KCPAPNLLGGPSVFIFPPKIKDVLMISLSPIV 260 (444)
T ss_dssp ---------------SCCCCCCC-------------------------SCCCSCCCCCCEEEEECCCHHHHHCTTSCCEE
T ss_pred ---------------CcccCCcc-------------------------ccCCcccCCCceEEecCCchhheeecCCCcEE
Confidence 00000000 0000 00001111111222222 467999999
Q ss_pred EEEe-cC---C-ceeeEEeecCeeccccceeE--EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCce
Q psy2776 327 QVEL-SS---P-DIQVKWLKKGKEIKESARHI--ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGW 399 (803)
Q Consensus 327 ~C~~-~~---p-~~~i~W~~~g~~l~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~ 399 (803)
.|.+ +. | .+.+.|+|+|..+....... ...++ .|
T Consensus 261 ~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~----------------~~----------------------- 301 (444)
T 1igt_B 261 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS----------------TL----------------------- 301 (444)
T ss_dssp EEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSS----------------SE-----------------------
T ss_pred EEEEeecccCCCCeEEEEEECCccccCcccccceeCCCC----------------cE-----------------------
Confidence 9999 65 3 47999999998876432110 00000 00
Q ss_pred eeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhh
Q psy2776 400 WFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKR 479 (803)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 479 (803)
.....|+|.++..+|+|.|+|.|.|..+......
T Consensus 302 --------------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~-------------------------- 335 (444)
T 1igt_B 302 --------------------RVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIER-------------------------- 335 (444)
T ss_dssp --------------------EEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEE--------------------------
T ss_pred --------------------EEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEE--------------------------
Confidence 1234699999999999999999999887653311
Q ss_pred hhcccccccccccceeee--ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcE
Q psy2776 480 VLQKLAVPFSYKTRTTNL--QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKAC 555 (803)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~ 555 (803)
.+.+ .+..+|.+ .+.... ...+..| .+.|.|.+.|. |++ .++|+|+|..+......
T Consensus 336 --------------~v~~~~~~~~~P~v---~~~~~~--~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 395 (444)
T 1igt_B 336 --------------TISKPKGSVRAPQV---YVLPPP--EEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT 395 (444)
T ss_dssp --------------EEECCCCCCBCCEE---EEECCC--GGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred --------------EEeccCCCCCCCEE---EEeCCC--hHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccc
Confidence 1111 22333322 111111 1122334 59999999985 555 89999999988432211
Q ss_pred EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 556 RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 556 ~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
......+ .+.|.|.....+|.|.|+|.|.|...
T Consensus 396 ~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 396 EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred cceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 1111222 24567777777789999999999854
No 81
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=249.96 Aligned_cols=280 Identities=18% Similarity=0.290 Sum_probs=177.7
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCeeccc----------eeEEEe-------cCeeEEEEecCCC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDSLIKG----------RNITYE-------NNVARFTVVNCSE 206 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~~~~~----------~~~~~~-------~~~~~L~i~~v~~ 206 (803)
..|...+..+.+.+|+.+.|.|.+.+. |.+.+.|+|++..... .++... .....|.|.+++.
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 345666778899999999999999987 8889999998754321 011211 3456799999999
Q ss_pred CcceEEEEEEEcCCcCee-----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 207 SSEGRYTCKATNEAGTAE-----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+|+|.|+|.|.|..+... ..+.|.|...+..+
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p------------------------------------------- 120 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAP------------------------------------------- 120 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCC-------------------------------------------
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCc-------------------------------------------
Confidence 999999999999866421 23566665542110
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCce--eeEEeecCeeccccceeEEEEcC
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI--QVKWLKKGKEIKESARHIITSRG 358 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~--~i~W~~~g~~l~~~~~~~~~~~~ 358 (803)
.+. .+. ..+.+|+.+.|.|.+ +.|.+ .+.|+++|.++......... .
T Consensus 121 --------------------------~i~-~~~-~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~-~- 170 (327)
T 2wng_A 121 --------------------------VVS-GPA-ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP-V- 170 (327)
T ss_dssp --------------------------EEE-CCS-SCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEEC-S-
T ss_pred --------------------------eee-ccc-cccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccccc-c-
Confidence 011 111 334669999999999 65544 99999999998754321111 0
Q ss_pred ceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeE
Q psy2776 359 TQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRY 438 (803)
Q Consensus 359 ~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 438 (803)
.+.|.|.. ...|.|.....+|.|.|
T Consensus 171 ------------~~~~~~~~-------------------------------------------~s~L~i~~~~~d~~g~Y 195 (327)
T 2wng_A 171 ------------GESVSYSI-------------------------------------------HSTAKVVLTREDVHSQV 195 (327)
T ss_dssp ------------SCCSCEEE-------------------------------------------EEEEEEECCTTGGGCEE
T ss_pred ------------cCCCceEE-------------------------------------------EEEEEEechhcCcCceE
Confidence 11122221 12377777777788999
Q ss_pred EEEeeCCceeee-eecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccc
Q psy2776 439 TCKATNEAGTAE-TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKS 517 (803)
Q Consensus 439 ~C~a~~~~g~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 517 (803)
+|.|.|..+... ... . ..+.+.+..+|.+. +..
T Consensus 196 ~C~a~n~~~~~~~~~~---------~-----------------------------~~~~~~v~~~P~i~---~~~----- 229 (327)
T 2wng_A 196 ICEVAHVTLQGDPLRG---------T-----------------------------ANLSETIRVPPTLE---VTQ----- 229 (327)
T ss_dssp EEEEECTTSCSCCEEE---------E-----------------------------EEGGGTBCBCCEEE---EEE-----
T ss_pred EEEEeccccCCCcccc---------e-----------------------------EEeccccCCCCEEE---Eec-----
Confidence 999999876531 110 0 02223444555431 111
Q ss_pred eEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
..+.+|+.+.|.|.+.|.|++ .+.|+|+|..+.......+....++ +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 230 ~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 230 QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp ECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred CCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 116789999999999996544 7999999998865422222222222 578999999999999999999998875
Q ss_pred -EEEEEEEE
Q psy2776 591 -SLDLSLQV 598 (803)
Q Consensus 591 -s~s~~l~V 598 (803)
+.++.+.+
T Consensus 310 ~s~~~~~~~ 318 (327)
T 2wng_A 310 VSKSHDLKV 318 (327)
T ss_dssp EEEEEECC-
T ss_pred chhheEEEe
Confidence 44444433
No 82
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=240.73 Aligned_cols=225 Identities=13% Similarity=0.117 Sum_probs=147.2
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSP 502 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~ 502 (803)
..|.|.+++.+|+|.|+|.|.|..|...... . .+.+.+..+
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~------~---------------------------------~~~v~v~~p 91 (289)
T 3mjg_X 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDER------K---------------------------------RLYIFVPDP 91 (289)
T ss_dssp EEEEECSCCGGGCEEEEEECCC------CCC------E---------------------------------EEEEECCCT
T ss_pred EEEEEccCChhhCEEEEEEEcccCCCCcCcE------E---------------------------------eEEEEEECC
Confidence 4688999999999999999999886533211 0 222333322
Q ss_pred CCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 503 PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 503 p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
+ .+.+..... .....+.+|+.+.|.|.+. .|.+.+.|++++........ .+.....+ ...|+|.|+|.
T Consensus 92 ~-~~~~~~~~~-~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~----~~~~~~~~-----~~~d~G~Y~C~ 159 (289)
T 3mjg_X 92 T-VGFLPNDAE-ELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP----YDHQRGFS-----GIFEDRSYICK 159 (289)
T ss_dssp T-CCBCCCCHH-HHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC----EETTTEEE-----ECCCSSEEEEE
T ss_pred C-cCcccCCCC-cceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee----ecCCcCee-----eeccCcEEEEE
Confidence 1 111110000 0015688999999999998 68888999886522211111 01111111 35799999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. +..+.|.|...
T Consensus 160 a~n~~~~~~s~~~~l~v~~~------------------------------------------------------------ 179 (289)
T 3mjg_X 160 TTIGDREVDSDAYYVYRLQV------------------------------------------------------------ 179 (289)
T ss_dssp EEETTEEEECCCEEEEECCC------------------------------------------------------------
T ss_pred EEeCCceeeeeeEEEEecCC------------------------------------------------------------
Confidence 99876543 23344555331
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-----eCceEEEEEecCC
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-----DGENIILELKEAD 736 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-----~~~~~~L~i~~v~ 736 (803)
.+|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++............. ......|.|.++
T Consensus 180 ---------~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v- 249 (289)
T 3mjg_X 180 ---------SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA- 249 (289)
T ss_dssp ---------CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSC-
T ss_pred ---------CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEccc-
Confidence 15556666666789999999999999999999999998876544322222221 224578999999
Q ss_pred CCCCceeEEEEEEccCcceeeeEEEEEEeecc
Q psy2776 737 SETDAGDYKVVATNELGSATHGARVTVDVEKV 768 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 768 (803)
+.+|+|.|+|.|.|.+|..+.++.|.|.+.+.
T Consensus 250 ~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 250 ELEDSGTYTCNVTESVNDHQDEKAINITVVES 281 (289)
T ss_dssp CSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred ChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence 79999999999999999999999999976543
No 83
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.95 E-value=2.7e-27 Score=250.75 Aligned_cols=279 Identities=12% Similarity=0.085 Sum_probs=176.8
Q ss_pred CccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
.+.+.+...+. ..+.+|++++|.|.+ +. .+.+.|+|+|..+......
T Consensus 22 ~~~P~i~~~p~--~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~----------------------------- 69 (316)
T 3vh8_G 22 QDKPFLSAWPS--AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG----------------------------- 69 (316)
T ss_dssp --CCEEEEESC--SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH-----------------------------
T ss_pred CCCCEeeccCC--CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC-----------------------------
Confidence 34444444433 456789999999999 55 7899999998775432100
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
......|.|.+++.+|+|.|+|.|.+..+.......
T Consensus 70 -------------------------------------~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~------- 105 (316)
T 3vh8_G 70 -------------------------------------RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAP------- 105 (316)
T ss_dssp -------------------------------------CCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCC-------
T ss_pred -------------------------------------CcceEEEEECCCCcccCeEEEEEEEcCCCCcceecC-------
Confidence 011234888899999999999999875432211100
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeE
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEIS 541 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~ 541 (803)
+..+.|.|...+..|.+.... ...+.+|+.++|.|.+. .+++.+.
T Consensus 106 ------------------------------s~~~~l~V~~~~~~p~~~~~~----~~~v~~G~~v~L~C~~~-~~~~~~~ 150 (316)
T 3vh8_G 106 ------------------------------SNPVVIMVTGNHRKPSLLAHP----GPLVKSGERVILQCWSD-IMFEHFF 150 (316)
T ss_dssp ------------------------------CCCEEEEEECSSCCCEEEEES----CSEEETTCCEEEEEEES-SCCSEEE
T ss_pred ------------------------------CCcEEEEEecCCCCCeEEecC----CCccCCCCeEEEEEcCC-CCCcEEE
Confidence 013444444433333222111 22378999999999995 4667899
Q ss_pred EeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-----EEEEEEEEeeeEeEeeecccccEEE
Q psy2776 542 WMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-----SLDLSLQVLGYIIQQQEKNSLKFTK 615 (803)
Q Consensus 542 W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-----s~s~~l~V~~~p~~~~~~~~~~w~~ 615 (803)
|+|+|..+...... ..........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+
T Consensus 151 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~------------- 217 (316)
T 3vh8_G 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY------------- 217 (316)
T ss_dssp EEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS-------------
T ss_pred EEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC-------------
Confidence 99999876543211 11112245789999999999999999999998742 455566664321
Q ss_pred eeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEE
Q psy2776 616 VATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK 695 (803)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~ 695 (803)
.+|.+...+. ..+.+|++++|.|.
T Consensus 218 -------------------------------------------------------~~p~i~~~~~-~~v~~G~~v~L~C~ 241 (316)
T 3vh8_G 218 -------------------------------------------------------EKPSLSAQPG-PKVQAGESVTLSCS 241 (316)
T ss_dssp -------------------------------------------------------CCCEEEEESC-SCCCTTSCCEEEEE
T ss_pred -------------------------------------------------------CCCeEEeCCC-CeecCCCcEEEEEE
Confidence 1455554443 36788999999999
Q ss_pred EeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcc-----eeeeEEEEEEe
Q psy2776 696 VKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGS-----ATHGARVTVDV 765 (803)
Q Consensus 696 ~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~-----~~~~~~l~V~~ 765 (803)
+. .|.+.+.|+|+|..+........... .....|.|.++ + |+|.|+|.|+|..+. .+..+.|.|.+
T Consensus 242 ~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 242 SR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA-T--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp ES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred CC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCc-C--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence 97 58889999999987643211111112 23468999998 5 999999999998763 46667777754
No 84
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.95 E-value=8e-27 Score=260.64 Aligned_cols=131 Identities=14% Similarity=0.196 Sum_probs=88.1
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCcc--------C--CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGT--------G--PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECV 167 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~--------~--~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~ 167 (803)
...|.|.+++.+|+|.|+|.+.+..|. . ..... ..+.+... ...+|.+...+....+.+|+.+.|.|.
T Consensus 78 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~-~~l~V~~~-~~~~P~i~~~~~~~~~~~g~~v~L~C~ 155 (457)
T 1hzh_H 78 TAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKG-TTVIVSSA-STKGPSVFPLAPSSKSTSGGTAALGCL 155 (457)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCC-EEEEECSC-CCBCCEEEEECCCSCCCTTCCEEEEEE
T ss_pred EEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCc-EEEEecCC-CCCCCeEEecCccccccCCCcEEEEEE
Confidence 458999999999999999999987651 0 11122 22333221 123555554444445679999999999
Q ss_pred ECcc-CC-CeeEEEEcCeecccee---EEEecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 168 VSGV-PT-PDIKWYKDDSLIKGRN---ITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 168 ~~g~-p~-p~i~W~~~~~~~~~~~---~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
+.|. |. +.+.|++++..+.... ....++ ...|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus 156 ~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~ 227 (457)
T 1hzh_H 156 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEP 227 (457)
T ss_dssp EESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred EeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecc
Confidence 9986 64 7899999986543211 111111 2479999999999 9999999998776554444433
No 85
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=250.35 Aligned_cols=274 Identities=17% Similarity=0.228 Sum_probs=188.4
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 222 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 222 (803)
.+|.|...+.+..+.+|+.+.|.|.+.+. +.|++++.. ............|.|.+++.+|+|.|+|.+.|..|.
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 76 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP--HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG 76 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS--SCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC--ceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence 57888888888999999999999999873 999976532 222333445679999999999999999999998887
Q ss_pred eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCC
Q psy2776 223 AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKS 302 (803)
Q Consensus 223 ~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (803)
...++.|.|...+..
T Consensus 77 ~~~~~~l~V~~~~~~----------------------------------------------------------------- 91 (292)
T 4dkd_C 77 GSAAIHLYVKDPARP----------------------------------------------------------------- 91 (292)
T ss_dssp CCEEECCEECCSSCC-----------------------------------------------------------------
T ss_pred cceEEEEEEcCcccc-----------------------------------------------------------------
Confidence 777777877765210
Q ss_pred CccccccccCCceeeeccccceeEEEEecCCc--eeeEEeec-CeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 303 TPAVEFLSKLPSVTLVPHLGDATFQVELSSPD--IQVKWLKK-GKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~--~~i~W~~~-g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
+ ...+....+.+|+.+.|.|.+..|. +.+.|+++ +..+....+..+...
T Consensus 92 -----~-~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---------------------- 143 (292)
T 4dkd_C 92 -----W-NVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPW---------------------- 143 (292)
T ss_dssp -----E-EESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSS----------------------
T ss_pred -----c-cccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCC----------------------
Confidence 0 1112334456799999999994354 78999997 555544333221111
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCC
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLP 459 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~ 459 (803)
..|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 144 -------------------------------------------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~------- 173 (292)
T 4dkd_C 144 -------------------------------------------HGFTIHRAKFIQSQDYQCSALMGGRKVMSI------- 173 (292)
T ss_dssp -------------------------------------------SCCEETTCCGGGCSEEEEEECSTTSCEECC-------
T ss_pred -------------------------------------------ceEEECCCCHHHCeEEEEEEEeCCCceeEE-------
Confidence 127788899999999999999876654431
Q ss_pred ceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCC-
Q psy2776 460 LSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR- 537 (803)
Q Consensus 460 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~- 537 (803)
.+.|.|...+ ..|.+... .....+.+|+.+.|.|.+.+.|+
T Consensus 174 ----------------------------------~~~l~V~~~~~~~p~i~~~---~~~~~~~~g~~v~l~C~~~~~~~~ 216 (292)
T 4dkd_C 174 ----------------------------------SIRLKVQKVIPGPPALTLV---PAELVRIRGEAAQIVCSASSVDVN 216 (292)
T ss_dssp ----------------------------------CEEEEEECCCCSSCEEEEE---SSCBCCCSSSCEEEEEEEEESSSC
T ss_pred ----------------------------------EEEEEEeCCCCCCCeEEcc---CCceeEecCCCEEEEEEecCCCCc
Confidence 3344444311 12222211 12344568999999999998776
Q ss_pred CeeEEeeCCeeecCCCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 538 PEISWMKNGAEITDSKACRIFID--EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 538 ~~v~W~~~g~~i~~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+.+.|++++..+........... ...+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|....
T Consensus 217 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp CEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred eEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence 56889999887755433222211 123689999999999999999999999999999999997754
No 86
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.95 E-value=8.8e-27 Score=248.46 Aligned_cols=275 Identities=15% Similarity=0.224 Sum_probs=186.8
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECcc----CCCeeEEEEcCe--e-------------c---cceeEEE---ecCeeEE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGV----PTPDIKWYKDDS--L-------------I---KGRNITY---ENNVARF 199 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~----p~p~i~W~~~~~--~-------------~---~~~~~~~---~~~~~~L 199 (803)
+.+...+..+.+.+|+.+.|.|.+.+. +.+.+.|++++. . + ...++.+ .....+|
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 344455677889999999999999876 455799999541 1 0 0122222 2235679
Q ss_pred EEecCCCCcceEEEEE-EEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccc
Q psy2776 200 TVVNCSESSEGRYTCK-ATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 278 (803)
Q Consensus 200 ~i~~v~~~d~G~Y~C~-a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (803)
.|.+++.+|+|.|+|. +.+..+.....+.|.|...|..
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~----------------------------------------- 133 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN----------------------------------------- 133 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-----------------------------------------
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc-----------------------------------------
Confidence 9999999999999998 5566677777778888765310
Q ss_pred cceeeccccccccceeeeeeccCCCccccccccCCceeeeccc---cceeEEEE-e-cCCceeeEEeecCeeccccceeE
Q psy2776 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHL---GDATFQVE-L-SSPDIQVKWLKKGKEIKESARHI 353 (803)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~C~-~-~~p~~~i~W~~~g~~l~~~~~~~ 353 (803)
.+...+....+.+| +.+.|.|. + +.|.+.+.|++++........
T Consensus 134 -----------------------------~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~-- 182 (331)
T 3u83_A 134 -----------------------------WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQE-- 182 (331)
T ss_dssp -----------------------------EEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEE--
T ss_pred -----------------------------eeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccce--
Confidence 00001222334456 77999997 5 899999999996322211000
Q ss_pred EEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCC
Q psy2776 354 ITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSES 433 (803)
Q Consensus 354 ~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 433 (803)
.... .|.+. -...|.|.++..+
T Consensus 183 ~~~~---------------~~~~~-------------------------------------------~~~~L~i~~~~~~ 204 (331)
T 3u83_A 183 IRNP---------------NGTVT-------------------------------------------VISRYRLVPSREA 204 (331)
T ss_dssp EECT---------------TSCEE-------------------------------------------EEEEEEECCCGGG
T ss_pred eECC---------------CCcEE-------------------------------------------EEEEEEEEecccc
Confidence 0000 00010 0124888888999
Q ss_pred CceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeec
Q psy2776 434 SEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDS 513 (803)
Q Consensus 434 d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~ 513 (803)
|+|.|+|.|.|..|.... .+.|.|..+|.+. ..
T Consensus 205 d~G~Y~C~a~n~~~~~~~------------------------------------------~~~l~V~~~P~~~-----~~ 237 (331)
T 3u83_A 205 HQQSLACIVNYHMDRFKE------------------------------------------SLTLNVQYEPEVT-----IE 237 (331)
T ss_dssp TTCEEEEEEEETTEEEEE------------------------------------------EEECCEEEEEEEE-----EE
T ss_pred CCCEEEEEEecCCCccee------------------------------------------eEEEEEecCCeEE-----Ee
Confidence 999999999999877655 4455555555321 11
Q ss_pred cccceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecCCeEEEEEe-eeccCcCeEEEEEEEcCCCCeE
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIY-SVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~-~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
......+.+|+.+.|.|.+.|.|.|. +.|++++..+.... .+ .+.+|.|. ++..+|+|.|+|.|.|..|..+
T Consensus 238 ~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~----~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~ 311 (331)
T 3u83_A 238 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA----QNRTLFFKGPINYSLAGTYICEATNPIGTRS 311 (331)
T ss_dssp CCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE----ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred cCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee----cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence 12234567899999999999999998 99999998886542 11 23579999 9999999999999999999999
Q ss_pred EEEEEEEeeeE
Q psy2776 592 LDLSLQVLGYI 602 (803)
Q Consensus 592 ~s~~l~V~~~p 602 (803)
.++.|.|...+
T Consensus 312 ~~~~l~V~~~~ 322 (331)
T 3u83_A 312 GQVEVNITEAA 322 (331)
T ss_dssp EEEEECCBC--
T ss_pred EEEEEEEeccc
Confidence 99999998754
No 87
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.94 E-value=1e-26 Score=246.36 Aligned_cols=283 Identities=13% Similarity=0.123 Sum_probs=177.3
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..+.... ........|.|.+++.+|+|.|+|.|.|..+
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~ 98 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGRIFQESFNMSPVTTAHAGNYTCRGSHPHS 98 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence 45788887776 568899999999999987 67899999998754321 1122346799999999999999999987432
Q ss_pred -----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 222 -----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 222 -----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.....+.|.|...+.
T Consensus 99 ~~~~~~~s~~~~l~V~~~~~------------------------------------------------------------ 118 (316)
T 3vh8_G 99 PTGWSAPSNPVVIMVTGNHR------------------------------------------------------------ 118 (316)
T ss_dssp SSSBCCCCCCEEEEEECSSC------------------------------------------------------------
T ss_pred CcceecCCCcEEEEEecCCC------------------------------------------------------------
Confidence 223345565544310
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
.+.+.. .+... +.+|+.++|.|.+..+.+.+.|+|+|..+...........
T Consensus 119 --------~p~~~~-~~~~~-v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~------------------- 169 (316)
T 3vh8_G 119 --------KPSLLA-HPGPL-VKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHD------------------- 169 (316)
T ss_dssp --------CCEEEE-ESCSE-EETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEET-------------------
T ss_pred --------CCeEEe-cCCCc-cCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecC-------------------
Confidence 011111 11122 5679999999999767789999999887753221110000
Q ss_pred EEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccC
Q psy2776 377 GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWP 456 (803)
Q Consensus 377 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~ 456 (803)
......|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 170 ------------------------------------------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~-- 205 (316)
T 3vh8_G 170 ------------------------------------------GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAP-- 205 (316)
T ss_dssp ------------------------------------------TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCC--
T ss_pred ------------------------------------------CCceEEEEECCCChhhCceEEEEEecCCCCccccCC--
Confidence 012345889999999999999999998775322100
Q ss_pred CCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC
Q psy2776 457 GLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP 536 (803)
Q Consensus 457 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p 536 (803)
. ..+.|.|...+..|.+.... ...+.+|+.++|.|.+. .|
T Consensus 206 s-----------------------------------~~~~l~V~~~~~~p~i~~~~----~~~v~~G~~v~L~C~~~-~~ 245 (316)
T 3vh8_G 206 S-----------------------------------DPLDIVVTGPYEKPSLSAQP----GPKVQAGESVTLSCSSR-SS 245 (316)
T ss_dssp C-----------------------------------CCEEEEEECSSCCCEEEEES----CSCCCTTSCCEEEEEES-SC
T ss_pred C-----------------------------------CCEEEEecCCCCCCeEEeCC----CCeecCCCcEEEEEECC-CC
Confidence 0 12334444333333332211 12467899999999998 47
Q ss_pred CCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCC-----CeEEEEEEEEeeeE
Q psy2776 537 RPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAG-----STSLDLSLQVLGYI 602 (803)
Q Consensus 537 ~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-----~~s~s~~l~V~~~p 602 (803)
.+.+.|+|+|..+........... .....|.|.+++ |+|.|+|.|.|..+ ..+..+.|.|.+.|
T Consensus 246 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 246 YDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp CSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred CcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 789999999987654221111111 123789999999 99999999999765 35677778877654
No 88
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=243.03 Aligned_cols=286 Identities=17% Similarity=0.253 Sum_probs=195.1
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc-eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA-RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+.... ++.+.
T Consensus 11 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----------------------------------- 55 (305)
T 2nzi_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQ----------------------------------- 55 (305)
T ss_dssp CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEE-----------------------------------
T ss_pred ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEE-----------------------------------
Confidence 445677789999999999 89999999999998876432 22111
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
...++...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 56 --------------------------~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~------------------- 90 (305)
T 2nzi_A 56 --------------------------EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG------------------- 90 (305)
T ss_dssp --------------------------EETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEE-------------------
T ss_pred --------------------------ECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccc-------------------
Confidence 11233456899999999999999999999887654
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+..... ........+.+|+.+.|.|.+.|.|.+.+.|++++..+.
T Consensus 91 -----------------------~~~l~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~ 146 (305)
T 2nzi_A 91 -----------------------TASLEVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146 (305)
T ss_dssp -----------------------EEEEEECEEEEECCCHH-HHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC
T ss_pred -----------------------eEEEEEecCCccCCCcc-ccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECC
Confidence 33444444333211100 011124667889999999999999999999999999998
Q ss_pred CCCcEEEEecCCeEEEEEee-eccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEc
Q psy2776 551 DSKACRIFIDEETSTIAIYS-VVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVE 629 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~-v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~ 629 (803)
.+.++.+........|.|.+ +..+|+|.|+|.|.|..|....++.|.|...|...
T Consensus 147 ~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p------------------------ 202 (305)
T 2nzi_A 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP------------------------ 202 (305)
T ss_dssp SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC------------------------
T ss_pred CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC------------------------
Confidence 88888877777788999999 99999999999999999999999999987654000
Q ss_pred ccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC
Q psy2776 630 NLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN 709 (803)
Q Consensus 630 ~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~ 709 (803)
...++. +.. .-.+..... .....|....+.|.+.+.|.+...|.+.
T Consensus 203 -------~~~~~~--~~~------------------------~~~v~l~w~-~p~~~g~~~i~~y~v~~~~~~~~~w~~~ 248 (305)
T 2nzi_A 203 -------RGVKVS--DVS------------------------RDSVNLTWT-EPASDGGSKITNYIVEKCATTAERWLRV 248 (305)
T ss_dssp -------EEEEEE--SCC------------------------SSCEEEEEE-CCSCCSBSCEEEEEEEEEETTSCCEEEE
T ss_pred -------CCceee--ecc------------------------CCEEEEEEc-CCccCCCCceeEEEEEEecCCCCccEEC
Confidence 000000 000 000000000 0012355567788888888888888876
Q ss_pred CeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEeeccCCCCCc
Q psy2776 710 NKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 710 ~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~ 774 (803)
+... ...|.|.++ ...|.|.|+|.|.|.+|....+....+...+..+|.+.
T Consensus 249 ~~~~-------------~~~~~i~~l-~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p~~~ 299 (305)
T 2nzi_A 249 GQAR-------------ETRYTVINL-FGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299 (305)
T ss_dssp EEES-------------SSEEEECSC-CSSCEEEEEEEEEETTEECCCCCCCCCEECCC------
T ss_pred cccc-------------CceEEecCC-CCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCcccccc
Confidence 5432 236889999 78999999999999999886554433322344455554
No 89
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.94 E-value=1.5e-24 Score=236.74 Aligned_cols=320 Identities=17% Similarity=0.224 Sum_probs=214.5
Q ss_pred eeeccccceeEEEEe-cCCceeeEEeec--Ceeccccc-----eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccce
Q psy2776 316 TLVPHLGDATFQVEL-SSPDIQVKWLKK--GKEIKESA-----RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVS 387 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~~~i~W~~~--g~~l~~~~-----~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 387 (803)
..+.+|+.+.|.|.+ |.|.+.+.|+|+ |..+.... ++.+.
T Consensus 10 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~-------------------------------- 57 (389)
T 2jll_A 10 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK-------------------------------- 57 (389)
T ss_dssp EEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEE--------------------------------
T ss_pred eEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEe--------------------------------
Confidence 344559999999999 899999999999 87776421 11111
Q ss_pred eeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
...+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 58 ------------------------------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---------------- 91 (389)
T 2jll_A 58 ------------------------------GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK---------------- 91 (389)
T ss_dssp ------------------------------ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEE----------------
T ss_pred ------------------------------ccCCcceEEEcccChhhCEEEEEEEEeCCCCcce----------------
Confidence 1124567999999999999999999999988755
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCe
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~ 547 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.+.+.|+|+|.
T Consensus 92 --------------------------~~~l~V~~~P~~~~------~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~ 139 (389)
T 2jll_A 92 --------------------------SMYLDIEYAPKFIS------NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKL 139 (389)
T ss_dssp --------------------------EEEEEEEEEEEECC------SCCEEEECTTCCEEEEECEEEESCCEEEEEETTE
T ss_pred --------------------------EEEEEEEeCCEEec------CcceEEeccCCEEEEEEEEEecCCCeEEEEECCc
Confidence 34455555554321 1123467889999999999999999999999999
Q ss_pred eecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEe-----E----eeecc-------
Q psy2776 548 EITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYII-----Q----QQEKN------- 609 (803)
Q Consensus 548 ~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~-----~----~~~~~------- 609 (803)
.+.... ++.+........|.|.++..+|+|.|+|.|.|..|....++.|.|...|. . .....
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p 219 (389)
T 2jll_A 140 VLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219 (389)
T ss_dssp ESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECC
T ss_pred cCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCC
Confidence 987653 66666666778999999999999999999999999999888888866550 0 00111
Q ss_pred -----------cccEEEeee-------eCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 610 -----------SLKFTKVAT-------LDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 610 -----------~~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
.+.|.+... .......+.|.+|.+.+.|.|+|.|.|..|.+..+....+.+.. ..++.
T Consensus 220 ~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~----~~~p~ 295 (389)
T 2jll_A 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP----VREPS 295 (389)
T ss_dssp SCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC----CCCCC
T ss_pred CCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecC----CCCCC
Confidence 233333321 11234679999999999999999999999998877654433221 11344
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec---CCCceE--EeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIV--WFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~---p~~~v~--W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.+.. ....+..+.|....... |-..+. |...+.. .........+....+.|.++ .....-.|++
T Consensus 296 ~p~~~~-----~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L-~~~t~Y~~~V 366 (389)
T 2jll_A 296 PPSIHG-----QPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKE---DQWLEKKVQGNKDHIILEHL-QWTMGYEVQI 366 (389)
T ss_dssp CCCEEE-----EEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEECTTCCEEEECSC-CTTCEEEEEE
T ss_pred CCcccc-----ccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCC---cceeEeeccCCcceEEeCCc-CCCCEEEEEE
Confidence 554321 12346678887764211 222233 2221110 00001122333445778887 5566667899
Q ss_pred EEEccCcceeee
Q psy2776 747 VATNELGSATHG 758 (803)
Q Consensus 747 ~a~N~~G~~~~~ 758 (803)
.|.|..|....+
T Consensus 367 ~A~n~~G~s~~s 378 (389)
T 2jll_A 367 TAANRLGYSEPT 378 (389)
T ss_dssp EEEC-CCBCCCE
T ss_pred EEEcCCcCCCce
Confidence 999999986544
No 90
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.94 E-value=4e-26 Score=235.12 Aligned_cols=252 Identities=21% Similarity=0.306 Sum_probs=180.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECc-cCCC--eeEEEEcCeeccceeEEEecCeeEEEEecC---CCCcceE--EE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSG-VPTP--DIKWYKDDSLIKGRNITYENNVARFTVVNC---SESSEGR--YT 213 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~d~G~--Y~ 213 (803)
+.+|.+..+ ..+.+|+.+.|.|.+.| .|.| .+.|+|++..+.. .+...+. .|.+..+ +.+|+|. |+
T Consensus 4 ~~~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~-~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~ 77 (265)
T 2oz4_A 4 ATPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGND--SFSAKASVSVTAEDEGTQRLT 77 (265)
T ss_dssp SSCCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC-EEEECSS--EEEEEEEEEECGGGCEEEEEE
T ss_pred CCCCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc-eEeeCCC--eEEEEeecccccccCCcceEE
Confidence 345666543 36889999999999998 7877 8999999998875 2233332 4555554 7788774 99
Q ss_pred EEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 214 CKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 214 C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
|.+.|..|....++.|.|...+.
T Consensus 78 C~a~n~~~~~~~~~~l~V~~~p~--------------------------------------------------------- 100 (265)
T 2oz4_A 78 CAVILGNQSQETLQTVTIYSFPA--------------------------------------------------------- 100 (265)
T ss_dssp EEEEETTEEEEEEEEEEEECCCC---------------------------------------------------------
T ss_pred EEEecCCCCcEEEEEEEEeCCCC---------------------------------------------------------
Confidence 99999999888888888876531
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~ 373 (803)
+.+. +....+.+|+.+.|.|.+. |.+.+.| +|.++... +
T Consensus 101 ------------p~~~---~~~~~v~~G~~v~l~C~~~-p~~~i~W--~g~~~~~~--------~--------------- 139 (265)
T 2oz4_A 101 ------------PNVI---LTKPEVSEGTEVTVKCEAH-PRAKVTL--NGVPAQPL--------G--------------- 139 (265)
T ss_dssp ------------CEEE---ESCSEEETTCEEEEEEECC-TTSEEEE--SSCSSSCC--------S---------------
T ss_pred ------------ceee---cCCceecCCCcEEEEEEcc-CCCEEEE--CCEEccCC--------C---------------
Confidence 0000 0112345699999999998 9999999 77777321 1
Q ss_pred ccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc-eeeeee
Q psy2776 374 TDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA-GTAETR 452 (803)
Q Consensus 374 g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~-g~~~~~ 452 (803)
....|.|..+..+|.|.|+|.|.|.. |.....
T Consensus 140 -----------------------------------------------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~ 172 (265)
T 2oz4_A 140 -----------------------------------------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHK 172 (265)
T ss_dssp -----------------------------------------------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEE
T ss_pred -----------------------------------------------CcEEEEEccccccCCceEEEEEEcCCCCCcccc
Confidence 11236778888889999999998544 544421
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
. ..+.|.|..+|.+... ..+....+.+|+.+.|.|.+
T Consensus 173 s---------------------------------------~~~~l~V~~~p~~~~~----~~p~~~~v~~g~~~~l~C~~ 209 (265)
T 2oz4_A 173 N---------------------------------------QTRELRVLYGPRLDER----DCPGNWTWPENSQQTPMCQA 209 (265)
T ss_dssp E---------------------------------------EEEEEEEEEEEECCGG----GSCSEEEEETTCEECCCCCC
T ss_pred c---------------------------------------ccEEEEEEeCCccccc----cCCCccEEcCCCeEEEEeEC
Confidence 1 1445556665554222 11235678899999999999
Q ss_pred cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 533 FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 533 ~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|+|.|.+.|+|+|..+.... . +..+..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 210 ~g~P~p~i~W~~~~~~~~~~g-----------~--~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 210 WGNPLPELKCLKDGTFPLPIG-----------E--SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEESCCEEEEEETTTEECCTT-----------S--CEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCCCCeEEEEECCcccCCCC-----------c--EEEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 999999999999997332211 1 124788999999999999999999999999865
No 91
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.94 E-value=4.8e-25 Score=215.18 Aligned_cols=180 Identities=29% Similarity=0.478 Sum_probs=158.7
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.... ++.+....+...|.|.++..+|+|.|+|.|.|..|....+
T Consensus 13 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~ 92 (194)
T 2a38_A 13 QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST 92 (194)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEE
Confidence 35788999999999999999999999999999887663 5666666778899999999999999999999999988888
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|...+ .+|
T Consensus 93 ~~l~v~~~~--------------------------------------------------------------------~~p 104 (194)
T 2a38_A 93 AELLVKAET--------------------------------------------------------------------APP 104 (194)
T ss_dssp EEEEEECCC--------------------------------------------------------------------EEE
T ss_pred EEEEEccCC--------------------------------------------------------------------CCC
Confidence 888876421 156
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 105 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g 183 (194)
T 2a38_A 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEA-YPEDSGTYSVNATNSVG 183 (194)
T ss_dssp EEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEE-CGGGCEEEEEEEEETTE
T ss_pred EEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCC-ChhcCeEEEEEEEeCCC
Confidence 66666667789999999999999999999999999999999888988888888889999999 78999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
..+.++.|.|+
T Consensus 184 ~~~~~~~l~V~ 194 (194)
T 2a38_A 184 RATSTAELLVQ 194 (194)
T ss_dssp EEEEEEEEEEC
T ss_pred ceEEEEEEEEC
Confidence 99999988873
No 92
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.93 E-value=3.5e-24 Score=240.42 Aligned_cols=331 Identities=14% Similarity=0.160 Sum_probs=191.4
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccC----CCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-C
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTG----PASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-P 172 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~----~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p 172 (803)
...|.|.+++.+|+|.|.|.+.+..|.. ...... .+.+.. ....+|.+..... ..+.+|+.+.|.|.+.|. |
T Consensus 79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~l~V~~-~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P 155 (475)
T 1iga_A 79 TAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGT-LVTVSS-ASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFP 155 (475)
T ss_pred eEEEEECCCChhhCEEEEEEEeccCCCccceeeecCce-EEEecc-CCCcCCeEEecCc-cccCCCCeEEEEEEEeeecC
Confidence 4689999999999999999999876521 111122 233321 1123455544322 223689999999999986 6
Q ss_pred C-C-eeEEEEcCeecccee--EEE--ecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccce
Q psy2776 173 T-P-DIKWYKDDSLIKGRN--ITY--ENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARH 242 (803)
Q Consensus 173 ~-p-~i~W~~~~~~~~~~~--~~~--~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~ 242 (803)
. | .|.|++++....... ... .++ ...|.|.++..+|+|.|+|.|.|..+. ..+..+.+.+.....
T Consensus 156 ~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~~~---- 230 (475)
T 1iga_A 156 QEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPSTPP---- 230 (475)
T ss_pred CCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccCcc----
Confidence 5 5 899999875322111 001 111 236889999999999999999998873 223333322210000
Q ss_pred eEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCceeeecccc
Q psy2776 243 IITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLG 322 (803)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 322 (803)
..++.|.. ........+.+....|....+.+|+
T Consensus 231 --------------------~~~~~~~~---------------------------~~~~~~~~p~v~~~~p~~~~~~~G~ 263 (475)
T 1iga_A 231 --------------------TPSPSTPP---------------------------TPSPSCCHPRLSLHRPALEDLLLGS 263 (475)
T ss_pred --------------------cccccccc---------------------------cCCCCCCCcEEEEcCCChHHhccCC
Confidence 00000000 0000000111111223333356799
Q ss_pred ceeEEEEe-cCCc---eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCc
Q psy2776 323 DATFQVEL-SSPD---IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGG 398 (803)
Q Consensus 323 ~~~l~C~~-~~p~---~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~ 398 (803)
.+.|.|.+ +.++ +.+.| ++..+........ .....|.|.
T Consensus 264 ~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~--------------~~~~~g~~~--------------------- 306 (475)
T 1iga_A 264 EANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPP--------------ERDLCGCYS--------------------- 306 (475)
T ss_pred ceEEEEEEEcccCCCceEEEE--CCCCcCCccccCc--------------eECCCCCEE---------------------
Confidence 99999999 5533 69999 4443332110000 000011111
Q ss_pred eeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchh
Q psy2776 399 WWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMK 478 (803)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 478 (803)
....|.|.++..+|.|.|+|.|.|..+.....
T Consensus 307 ----------------------~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~-------------------------- 338 (475)
T 1iga_A 307 ----------------------VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLT-------------------------- 338 (475)
T ss_pred ----------------------EEEEEEEchHHhccCCcEEEEEEcCCCCCceE--------------------------
Confidence 23458999999999999999999988765431
Q ss_pred hhhcccccccccccceeee---ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCC
Q psy2776 479 RVLQKLAVPFSYKTRTTNL---QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSK 553 (803)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l---~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~ 553 (803)
..| .+..+|.+ .+... ....+.+|+.+.|.|.+.|.++ +.+.|+|+|..+..+.
T Consensus 339 ----------------~~v~~~~~~~~P~v---~~~~~--~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 397 (475)
T 1iga_A 339 ----------------ATLSKSGNTFRPEV---HLLPP--PSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK 397 (475)
T ss_pred ----------------EEeecCCCCCCCeE---EEECC--ChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCc
Confidence 111 12233321 11111 1223578999999999999643 5899999999887653
Q ss_pred cEE--EEec---CC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 554 ACR--IFID---EE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 554 ~~~--~~~~---~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
... .... .+ .+.|.|.....+|.|.|+|.|.|....
T Consensus 398 ~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 398 YLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred eeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 111 1111 11 246778888788999999999998654
No 93
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.93 E-value=2.9e-27 Score=262.32 Aligned_cols=325 Identities=14% Similarity=0.197 Sum_probs=193.7
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCccCCCcceeeEEEEcCCCCCCCCeeeccCcCeeeecCCcEEEEEEECcc-CCC-e
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIGTGPASHNTRYVVVKAPVDAEAPVIQEPLKDSVAGFQSSVTLECVVSGV-PTP-D 175 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g~~~~s~~~~~~~~~~~~~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p-~ 175 (803)
...|.|.+++.+|+|.|+|.+.+..+.. .... .+.+.... ..+|.+........+.+|+.++|.|.+.|. |.| .
T Consensus 77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~--~~~~-~l~V~~~~-~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~ 152 (434)
T 1igy_B 77 TANIHLSSLTSDDSAVYYCVREGEVPYW--GQGT-TVTVSSAK-TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT 152 (434)
T ss_dssp BBCEEECSBCGGGCSEECCCCSSSSCCC--CCCE-ECEECCSC-CBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCE
T ss_pred EEEEEECCCChHHCEEEEEEEEcccccc--CCce-EEEEccCC-CCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeE
Confidence 3579999999999999999998854321 2222 22332211 234444432223345789999999999986 776 8
Q ss_pred eEEEEcCeecccee--EEEe-c---CeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecc
Q psy2776 176 IKWYKDDSLIKGRN--ITYE-N---NVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGT 249 (803)
Q Consensus 176 i~W~~~~~~~~~~~--~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~ 249 (803)
+.|++++..+.... .... + ....|.|.++..+| |.|+|.|.|..+.......+.+........ .
T Consensus 153 v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~-~-------- 222 (434)
T 1igy_B 153 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPC-I-------- 222 (434)
T ss_dssp EEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCC-C--------
T ss_pred EEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccc-c--------
Confidence 99999987532110 0011 1 12469999999999 999999999998765444443321100000 0
Q ss_pred eeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCcee-eeccccceeEEE
Q psy2776 250 QRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVT-LVPHLGDATFQV 328 (803)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~C 328 (803)
. ..... +.+....|... .+.+|+.+.|.|
T Consensus 223 ------------------------------------------------~-~~~~~-p~v~~~~p~~~~~v~~G~~~~L~C 252 (434)
T 1igy_B 223 ------------------------------------------------C-TVPEV-SSVFIFPPKPKDTLLITVTPKVTC 252 (434)
T ss_dssp ------------------------------------------------C-CCSSS-CCEEEECCCHHHHHSTTSCCEEEE
T ss_pred ------------------------------------------------C-CCCcC-cEEEEeCCChHHhcccCCCcEEEE
Confidence 0 00000 11111112212 156799999999
Q ss_pred Ee-cCC----ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeee
Q psy2776 329 EL-SSP----DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFES 403 (803)
Q Consensus 329 ~~-~~p----~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (803)
.+ +.+ .+.+.|+|+|..+......... ....|.|
T Consensus 253 ~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~--------------~~~~~~~--------------------------- 291 (434)
T 1igy_B 253 VVVDISKDDPEVQFSWFVDNVEVHTAQTQPRE--------------EQFNSTF--------------------------- 291 (434)
T ss_dssp EECCCCSSCCCCCBCBBSSSCCBCCCSCCCCC--------------CCCSSSC---------------------------
T ss_pred EEeccccCCCCeEEEEEeCCcccCCcccCcce--------------eCCCCcE---------------------------
Confidence 99 652 4689999998777532211000 0000111
Q ss_pred eecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcc
Q psy2776 404 KYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQK 483 (803)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 483 (803)
.....|.|.++..+|.|.|+|.|.|..|......
T Consensus 292 ----------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~------------------------------ 325 (434)
T 1igy_B 292 ----------------RVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEK------------------------------ 325 (434)
T ss_dssp ----------------CCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCC------------------------------
T ss_pred ----------------EEEEEEEECHHHccCCCcEEEEEECCCCCCceeE------------------------------
Confidence 0123488999999999999999999887653311
Q ss_pred cccccccccceeee--ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEe
Q psy2776 484 LAVPFSYKTRTTNL--QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFI 559 (803)
Q Consensus 484 ~~~~~~~~~~~~~l--~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~ 559 (803)
.+.+ .+..+|.+ .+.... .....|+.+.|.|.+.|.++ +.++|+|+|..+..........
T Consensus 326 ----------~v~~~~~~~~~P~v---~~~~~~---~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 389 (434)
T 1igy_B 326 ----------TISKTKGKPRAPQV---YTIPPP---KEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIM 389 (434)
T ss_dssp ----------CCCCCCSCCBCCCC---EEECCC---SSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCC
T ss_pred ----------EEeccCCCCcCCEE---EEECCC---HHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceecccee
Confidence 1111 23334432 111111 11235778999999999644 3899999999885432111111
Q ss_pred cCC-----eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 560 DEE-----TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 560 ~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+ .+.|.|.....+|.|.|+|.|.|....
T Consensus 390 ~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 390 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp CSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred CCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 112 246778777778899999999998654
No 94
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=7.9e-25 Score=230.37 Aligned_cols=265 Identities=19% Similarity=0.292 Sum_probs=185.6
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEE---EecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NIT---YENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++. ..++...|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 5788888889999999999999999999999999999999887632 222 23455689999999999999999999
Q ss_pred cCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeee
Q psy2776 218 NEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWW 297 (803)
Q Consensus 218 n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (803)
|..|....++.|.|...+....
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~---------------------------------------------------------- 104 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKIHL---------------------------------------------------------- 104 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEECC----------------------------------------------------------
T ss_pred cCCCCccceEEEEEecCCccCC----------------------------------------------------------
Confidence 9999888888888876631110
Q ss_pred eccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccE
Q psy2776 298 FESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDI 376 (803)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 376 (803)
+.++. .+....+..|+.+.|.|.+ +.|.+.+.|++++..+..+.++.+...+
T Consensus 105 --------~~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~------------------ 157 (305)
T 2nzi_A 105 --------PKTLE-GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR------------------ 157 (305)
T ss_dssp --------CHHHH-SSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECS------------------
T ss_pred --------Ccccc-ccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcC------------------
Confidence 00011 1123345569999999999 8999999999999888765554443322
Q ss_pred EEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEe-ccCCCceeEEEEeeCCceeeeeeccc
Q psy2776 377 GVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVN-CSESSEGRYTCKATNEAGTAETRTMW 455 (803)
Q Consensus 377 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~~~~g~~~~~~~~ 455 (803)
+...|.|.+ +..+|.|.|+|.|.|..|....
T Consensus 158 --------------------------------------------~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~---- 189 (305)
T 2nzi_A 158 --------------------------------------------SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK---- 189 (305)
T ss_dssp --------------------------------------------SEEEEEETTCCCSTTCEEEEEEEEETTEEEEE----
T ss_pred --------------------------------------------CceEEEEecCCccCccEEEEEEEEeCCCceee----
Confidence 234577777 8888999999999999988776
Q ss_pred CCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeee-ccccceEE------eecceeEE
Q psy2776 456 PGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVD-SNLKSQRL------SVKSQWKV 528 (803)
Q Consensus 456 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~~~~~v------~~g~~v~l 528 (803)
.+.|.|..+|..|...... .......+ ..|....+
T Consensus 190 --------------------------------------~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~ 231 (305)
T 2nzi_A 190 --------------------------------------TVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKIT 231 (305)
T ss_dssp --------------------------------------EEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEE
T ss_pred --------------------------------------EEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCcee
Confidence 3333343333332211000 00000000 12344455
Q ss_pred EEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 529 EVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 529 ~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.|.+...+.+...|.+.+... ...|.|.++...|.|.|+|.|.|..|...
T Consensus 232 ~y~v~~~~~~~~~w~~~~~~~-------------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~ 281 (305)
T 2nzi_A 232 NYIVEKCATTAERWLRVGQAR-------------ETRYTVINLFGKTSYQFRVIAENKFGLSK 281 (305)
T ss_dssp EEEEEEEETTSCCEEEEEEES-------------SSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred EEEEEEecCCCCccEECcccc-------------CceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence 666666666666666544321 35789999999999999999999988744
No 95
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.93 E-value=3.2e-24 Score=209.98 Aligned_cols=182 Identities=24% Similarity=0.314 Sum_probs=155.3
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.+.|.+.+.|+++|..+... .++.+.. ..+...|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 91 (197)
T 2j8h_A 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91 (197)
T ss_dssp CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred CccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEE
Confidence 4678899999999999999999999999999988764 4555543 3445699999999999999999999999998999
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|..+|.. ..|
T Consensus 92 ~~l~V~~~p~~------------------------------------------------------------------~~~ 105 (197)
T 2j8h_A 92 ASLEVEVPAKI------------------------------------------------------------------HLP 105 (197)
T ss_dssp EEEEEEEEEEE------------------------------------------------------------------CCS
T ss_pred EEEEEcCCCcC------------------------------------------------------------------CCC
Confidence 99998775510 023
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEec-CCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE-ADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~-v~~~~D~G~Y~C~a~N~~ 752 (803)
.++..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.+ + ..+|+|.|+|.|.|.+
T Consensus 106 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~~d~G~Y~C~a~N~~ 184 (197)
T 2j8h_A 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGV-ERKDAGFYVVCAKNRF 184 (197)
T ss_dssp SCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCC-CGGGCEEEEEEEEETT
T ss_pred ccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCC-CcccCEeEEEEEEeCC
Confidence 3334445677889999999999999999999999999999988888888877888999999 8 7899999999999999
Q ss_pred cceeeeEEEEEE
Q psy2776 753 GSATHGARVTVD 764 (803)
Q Consensus 753 G~~~~~~~l~V~ 764 (803)
|..+.++.|.|.
T Consensus 185 g~~~~~~~l~V~ 196 (197)
T 2j8h_A 185 GIDQKTVELDVA 196 (197)
T ss_dssp EEEEEEEEEEEE
T ss_pred CcEeEEEEEEEe
Confidence 999999988874
No 96
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.93 E-value=3.9e-24 Score=208.14 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=147.5
Q ss_pred eEEee-cceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 518 QRLSV-KSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 518 ~~v~~-g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
..+.+ |+.+.|.|.+.+.|. +.+.|+|+|..+....... ....|.|.++..+|+|.|+|.|.|. |..+.++
T Consensus 12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~ 85 (190)
T 2wv3_A 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANA 85 (190)
T ss_dssp EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEE
T ss_pred EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEEEeC-CcccccE
Confidence 44556 999999999999887 8899999999987654322 4689999999999999999999999 8888888
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|.. +|.
T Consensus 86 ~l~V~~-----------------------------------------------------------------------~p~ 94 (190)
T 2wv3_A 86 TIEVKA-----------------------------------------------------------------------APD 94 (190)
T ss_dssp EEEEEC-----------------------------------------------------------------------CCE
T ss_pred EEEEec-----------------------------------------------------------------------CCc
Confidence 888866 566
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeecc---CCCCeEEEeeCceEEEEEecCCC-CCCceeEEEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL---SSPKKREIFDGENIILELKEADS-ETDAGDYKVVA 748 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l~---~~~~~~~~~~~~~~~L~i~~v~~-~~D~G~Y~C~a 748 (803)
+...+....+.+|+.+.|.|.+.|.|.|.+.|++ +|.++. .+.++.+..++...+|.|.++ + .+|+|.|+|.|
T Consensus 95 ~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~d~G~Y~C~a 173 (190)
T 2wv3_A 95 ITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNL-QITEDPGEYECNA 173 (190)
T ss_dssp EEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSC-CTTTSCEEEEEEE
T ss_pred ccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEec-cccCCCEEEEEEE
Confidence 7766777789999999999999999999999999 787765 566777777777789999999 7 69999999999
Q ss_pred EccCcceeeeEEEEEEe
Q psy2776 749 TNELGSATHGARVTVDV 765 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~ 765 (803)
.|.+|..+.++.|.|+|
T Consensus 174 ~N~~g~~~~~~~l~V~V 190 (190)
T 2wv3_A 174 TNSIGSASVSTVLRVRV 190 (190)
T ss_dssp ECSSCEEEEEEEEEEEC
T ss_pred EecCCcceeEEEEEEEC
Confidence 99999999999999864
No 97
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=206.11 Aligned_cols=180 Identities=24% Similarity=0.323 Sum_probs=156.0
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 15 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~ 94 (197)
T 3lcy_A 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSK 94 (197)
T ss_dssp CCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEE
Confidence 46788999999999999999999999999999998888888887777789999999999999999999999999888999
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|...|.. .+.
T Consensus 95 l~v~~~p~~-------------------------------------------------------------------~~~- 106 (197)
T 3lcy_A 95 LLLQATPQF-------------------------------------------------------------------HPG- 106 (197)
T ss_dssp EEEEEEEEE-------------------------------------------------------------------CTT-
T ss_pred EEEEcCCCC-------------------------------------------------------------------CCC-
Confidence 988775500 000
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCC-CCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADS-ETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~-~~D~G~Y~C~a~N~~G~ 754 (803)
........+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.++ . .+|+|.|+|.|.|.+|.
T Consensus 107 ~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~d~G~Y~C~a~n~~g~ 185 (197)
T 3lcy_A 107 YPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNV-QRKTHAGKYKVQLSNVFGT 185 (197)
T ss_dssp SCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSC-CHHHHCEEEEEEEECSSCE
T ss_pred ccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccc-cchhhCceEEEEEEcCcCc
Confidence 011234567889999999999999999999999999999888888888777889999999 6 37999999999999999
Q ss_pred eeeeEEEEEE
Q psy2776 755 ATHGARVTVD 764 (803)
Q Consensus 755 ~~~~~~l~V~ 764 (803)
.+..+.|.|.
T Consensus 186 ~~~~~~l~V~ 195 (197)
T 3lcy_A 186 VDAILDVEIQ 195 (197)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEe
Confidence 9999988885
No 98
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.92 E-value=3.9e-24 Score=210.70 Aligned_cols=189 Identities=19% Similarity=0.266 Sum_probs=144.5
Q ss_pred ceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecC--CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDE--ETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~--~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
...+.+|+.+.|.|.+.+ .|.|.++|+|||.+|..+.++.+..+. +...|.|.++..+|+|.|+|.|.| |.+...
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~ 88 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNH 88 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEE
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEE
Confidence 467899999999999864 799999999999999988887777654 456899999999999999999999 666555
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccC--CCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL--GSPGQ 671 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~--~~~~~ 671 (803)
..+.+.... ...+........ .....
T Consensus 89 ~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~~ 116 (207)
T 3rbs_A 89 STVVLVGDV----------------------------------------------------FKKLQKEAEFQRQEWIRKQ 116 (207)
T ss_dssp EEEEECTHH----------------------------------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEccc----------------------------------------------------hhhhcccccccccccccCC
Confidence 554332100 000000000000 00012
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.|...+ ...+.+|+.+.|.|.+.|. |.|.+.|+|||.+|..+.++ .......+|.|.++ +.+|+|.|+|.|.|
T Consensus 117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 192 (207)
T 3rbs_A 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEF-SKKDAGIYEVILKD 192 (207)
T ss_dssp SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTC-CGGGCEEEEEEEEE
T ss_pred CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCC-CcccCEEEEEEEEc
Confidence 67787766 4788999999999999999 99999999999999877654 23345568999999 79999999999999
Q ss_pred cCcceeeeEEEEE
Q psy2776 751 ELGSATHGARVTV 763 (803)
Q Consensus 751 ~~G~~~~~~~l~V 763 (803)
.+|.++.++.|++
T Consensus 193 ~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 193 DRGKDKSRLKLVD 205 (207)
T ss_dssp TTEEEEEEEEECC
T ss_pred CCCEEEEEEEEec
Confidence 9999999998875
No 99
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.92 E-value=5.5e-25 Score=215.57 Aligned_cols=169 Identities=13% Similarity=0.078 Sum_probs=134.4
Q ss_pred ceEEeecceeEEEEE---EcCcCCCeeEEeeCCeeecC-----------------CCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVK---YFGFPRPEISWMKNGAEITD-----------------SKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~---~~g~p~~~v~W~~~g~~i~~-----------------~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|+.+.|.|. +.+.|.+.+.|+|+|..+.. ..++.+....+...|.|.++..+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 356889999999995 56789999999998743211 1234455566778999999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
|.|+|.|.|..|..+..+.|.|..
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~-------------------------------------------------------- 105 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVK-------------------------------------------------------- 105 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE--------------------------------------------------------
T ss_pred eEEEEEEEcCCCcEEEEEEEEecC--------------------------------------------------------
Confidence 999999999999999999999866
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeec----cCCCCeEEEeeCceEEEEE
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPL----LSSPKKREIFDGENIILEL 732 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l----~~~~~~~~~~~~~~~~L~i 732 (803)
||.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+ ..+.++.+..++....|.|
T Consensus 106 ---------------p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i 170 (203)
T 4fa8_A 106 ---------------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVD 170 (203)
T ss_dssp ---------------EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEE
T ss_pred ---------------CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEE
Confidence 455656666778889999999999999999999999876543 2345666666777777888
Q ss_pred ecCCCCCCceeEEEEEEccCcceee
Q psy2776 733 KEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
.++ +.+|+|.|+|+|+|.+|++..
T Consensus 171 ~~v-~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 171 LSL-PKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp EEE-CSSCCCCEEEEEESSSCEEEE
T ss_pred CCC-CHHHCEEEEEEEEcCCCEEEE
Confidence 899 789999999999999999875
No 100
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.92 E-value=1.1e-23 Score=208.86 Aligned_cols=186 Identities=25% Similarity=0.351 Sum_probs=151.5
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEe-cCCeEEEEEeee-ccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFI-DEETSTIAIYSV-VRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~-~~~~~~L~i~~v-~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+....... ...+..|.|.++ +.+|+|.|+|.|.|..|..+.+
T Consensus 14 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~ 93 (212)
T 2yd6_A 14 VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS 93 (212)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEE
T ss_pred ceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEE
Confidence 35778999999999999999999999999999987654333332 235678999999 5999999999999999998888
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|...+ ..+...|
T Consensus 94 ~~l~V~~~~----------------------------------------------------------------~~~~~~p 109 (212)
T 2yd6_A 94 TRLTVLRED----------------------------------------------------------------QIPRGFP 109 (212)
T ss_dssp EEEEEECGG----------------------------------------------------------------GCCTTCC
T ss_pred EEEEEeccC----------------------------------------------------------------ccCCCcc
Confidence 888886532 0112357
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC---CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS---PKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~---~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|.++... .++.....+....|.|.++ +.+|+|.|+|.|.|
T Consensus 110 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N 188 (212)
T 2yd6_A 110 TIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQS-EESDQGKYECVATN 188 (212)
T ss_dssp EEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred eeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCC-CcccCEEEEEEEEC
Confidence 7777777788999999999999999999999999999998754 4566666667789999999 79999999999999
Q ss_pred cCcce-eeeEEEEEEee
Q psy2776 751 ELGSA-THGARVTVDVE 766 (803)
Q Consensus 751 ~~G~~-~~~~~l~V~~~ 766 (803)
.+|.. +..+.|.|.+.
T Consensus 189 ~~G~~~s~~a~l~~~~~ 205 (212)
T 2yd6_A 189 SAGTRYSAPANLYVRGT 205 (212)
T ss_dssp TTEEEECCCEEEEEEC-
T ss_pred CCCccccccccEEEEec
Confidence 99998 56678888653
No 101
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.92 E-value=1.1e-23 Score=208.78 Aligned_cols=186 Identities=25% Similarity=0.419 Sum_probs=151.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec-CCCcEEEEec-CCeEEEEEeeecc-CcCeEEEEEEEcCCCC-eE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT-DSKACRIFID-EETSTIAIYSVVR-ADTSTYTVTATNAAGS-TS 591 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~-~~~~~~~~~~-~~~~~L~i~~v~~-~dsG~Y~C~a~n~~g~-~s 591 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+. ...++.+... .+...|.|.++.. +|+|.|+|.|.|..|. .+
T Consensus 14 ~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~ 93 (212)
T 2yd1_A 14 QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVS 93 (212)
T ss_dssp CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEE
T ss_pred CceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEE
Confidence 45788999999999999999999999999999987 4466666544 3448999999999 9999999999999998 78
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|...+ ..+..
T Consensus 94 ~~~~l~V~~~~----------------------------------------------------------------~~~~~ 109 (212)
T 2yd1_A 94 ADATLTIYEGD----------------------------------------------------------------KTPAG 109 (212)
T ss_dssp EEEEEEEECTT----------------------------------------------------------------CSCTT
T ss_pred eeEEEEEeccc----------------------------------------------------------------CCCCC
Confidence 88888886532 01122
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..........++ .|.|.++ +.+|+|.|+|.|.|.
T Consensus 110 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~---~L~i~~v-~~~d~G~Y~C~a~N~ 185 (212)
T 2yd1_A 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENS-REEDQGKYECVAENS 185 (212)
T ss_dssp CCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETT---EEEECSC-CGGGCEEEEEEEEET
T ss_pred CCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCC---eEEEccC-ChhhCEEEEEEeecC
Confidence 577887777788999999999999999999999999999998764433333332 7999999 799999999999999
Q ss_pred Ccceeee-EEEEEEeeccC
Q psy2776 752 LGSATHG-ARVTVDVEKVG 769 (803)
Q Consensus 752 ~G~~~~~-~~l~V~~~~~~ 769 (803)
+|..... +.|.|+.....
T Consensus 186 ~G~~~s~~~~l~V~~~~~~ 204 (212)
T 2yd1_A 186 MGTEHSKATNLYVKVRRVG 204 (212)
T ss_dssp TEEEECCCEEEEEEC---C
T ss_pred CCceeEEEEEEEEEecccc
Confidence 9999765 89999765443
No 102
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.91 E-value=2.9e-24 Score=228.14 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=136.4
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
.|.|.+...+|.|.|+|.|.|..+...... .+.+...+
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~------------------------------------------~~~~~~~~ 110 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDST------------------------------------------KKCADSNP 110 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEEEEEEE------------------------------------------CCCCCSSG
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCCcceee------------------------------------------ecCCCCCC
Confidence 488888888899999999999876554321 00000000
Q ss_pred CCccceeeeccccceEEeecceeEEEEEEcCcC-CC---eeEEeeCC-eeecCCCcEEEEecC----CeEEEEEeeeccC
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RP---EISWMKNG-AEITDSKACRIFIDE----ETSTIAIYSVVRA 574 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p-~~---~v~W~~~g-~~i~~~~~~~~~~~~----~~~~L~i~~v~~~ 574 (803)
..+. +....+....+.+|+.+.|.|.+.|.+ .+ .+.|+|++ ..+............ ..+.|.|.++..+
T Consensus 111 ~~p~--v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~ 188 (323)
T 2wqr_A 111 RGVS--AYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWI 188 (323)
T ss_dssp GGCE--EEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHH
T ss_pred CCCE--EEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHcc
Confidence 0111 111111233467899999999998864 56 89999974 444332221111111 2358999999999
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcc
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~ 654 (803)
|+|.|+|.|.|..+.......+.+..
T Consensus 189 D~G~Y~C~a~n~~~~~~~~~~v~~~~------------------------------------------------------ 214 (323)
T 2wqr_A 189 EGETYQCRVTHPHLPRALMRSTTKTS------------------------------------------------------ 214 (323)
T ss_dssp TTCCEEEEEECTTSSSCEEEEECCCC------------------------------------------------------
T ss_pred CCCCEEEEEECCCCCCCeeeEEEccC------------------------------------------------------
Confidence 99999999999865433333222110
Q ss_pred ceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE-----EeeC--
Q psy2776 655 TELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE-----IFDG-- 725 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~-----~~~~-- 725 (803)
....+|.+...+.......|+.++|.|.+.|. |.+ .|.|+++|.+|..+. +.. ..++
T Consensus 215 -------------~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~ 280 (323)
T 2wqr_A 215 -------------GPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGF 280 (323)
T ss_dssp -------------SCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSE
T ss_pred -------------CCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcE
Confidence 00114554433222222239999999999985 443 799999999886432 111 1122
Q ss_pred -ceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 726 -ENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 726 -~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
....|.|..+ ..+|+|.|+|.|.|..+.
T Consensus 281 ~~~s~L~i~~~-~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 281 FVFSRLEVTRA-EWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEEEEHH-HHHHCCCEEEEEECTTST
T ss_pred EEEEEEEEChH-HccCCCEEEEEEEeCCCC
Confidence 1357999998 678999999999999887
No 103
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.91 E-value=4e-23 Score=204.65 Aligned_cols=194 Identities=19% Similarity=0.276 Sum_probs=151.4
Q ss_pred eecceeEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 521 SVKSQWKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
-.++.+.|.|.+.+. |.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence 357889999999886 5789999999999998888888777777899999999999999999999998888777777664
Q ss_pred eeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecc
Q psy2776 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679 (803)
Q Consensus 600 ~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~ 679 (803)
..+.. .................++.+...+
T Consensus 95 ~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~p~~~~~~~ 124 (212)
T 2r15_A 95 AYDEA--------------------------------------------------YAEFQRLKQAAIAEKNRARVLGGLP 124 (212)
T ss_dssp HHHHH--------------------------------------------------HHHHHHHHHHHHHHHHSCEEEEBCC
T ss_pred eccch--------------------------------------------------hhhccccCcccccccCCCcccccCC
Confidence 31100 0000000000000001133444445
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+++|.++..+.++.+... +....|.|.++ +.+|+|.|+|.|.|.+|..+..
T Consensus 125 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~g~~~~~ 203 (212)
T 2r15_A 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV-STADSGKYGLVVKNKYGSETSD 203 (212)
T ss_dssp SEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSC-CGGGCEEEEEEEEETTEEEEEE
T ss_pred CcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCc-chHHCeEEEEEEEcCCCcEEEE
Confidence 567899999999999999999999999999999998888877776 66789999999 7999999999999999999999
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|.|.+
T Consensus 204 ~~l~V~~ 210 (212)
T 2r15_A 204 FTVSVFI 210 (212)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9998854
No 104
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.91 E-value=3.3e-23 Score=201.31 Aligned_cols=173 Identities=22% Similarity=0.346 Sum_probs=143.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee-CCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK-NGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~ 594 (803)
...+.+|+.+.|.|.+.+.|. .+.|++ +|..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 11 ~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~ 89 (189)
T 2v44_A 11 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 89 (189)
T ss_dssp EEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEE
T ss_pred ceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCCCcEEEEE
Confidence 577899999999999999887 899999 7888887788888777777899999999999999999999998876 6677
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|.. +|.
T Consensus 90 ~l~v~~-----------------------------------------------------------------------~p~ 98 (189)
T 2v44_A 90 VLEIYQ-----------------------------------------------------------------------KLT 98 (189)
T ss_dssp EEEEEC-----------------------------------------------------------------------CCE
T ss_pred EEEEec-----------------------------------------------------------------------CCc
Confidence 777755 445
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeecc--CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+. .+.++.+..++ .|.|.++ +.+|+|.|+|.|.|..
T Consensus 99 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~v-~~~d~G~Y~C~a~n~~ 174 (189)
T 2v44_A 99 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNI-NKSDEGIYRCEGRVEA 174 (189)
T ss_dssp EESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTTS---CEEETTC-CGGGCEEEEEEEEETT
T ss_pred eeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecCC---cEEEEEc-CcccCeEEEEEEEccc
Confidence 5555556778999999999999999999999999998875 34455443333 6999999 7999999999999999
Q ss_pred cceeeeEEEEEEe
Q psy2776 753 GSATHGARVTVDV 765 (803)
Q Consensus 753 G~~~~~~~l~V~~ 765 (803)
|.......+.|.|
T Consensus 175 ~~~~~~~~~~v~V 187 (189)
T 2v44_A 175 RGEIDFRDIIVIV 187 (189)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cCceeeeeEEEEE
Confidence 8887776666654
No 105
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.91 E-value=5.5e-24 Score=228.06 Aligned_cols=242 Identities=13% Similarity=0.131 Sum_probs=139.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|+|.|.|..+.... ...|.|.
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~------------------------------------------~~~l~V~ 114 (344)
T 1za6_B 77 STAYVELSSLRSEDTAVYFCTRSLNMAYWGQ------------------------------------------GTLVTVS 114 (344)
T ss_dssp TEEEEEECSCCGGGCEEEEEEETTTTCEECC------------------------------------------CEEEEEC
T ss_pred CEEEEEECCCCcccCEEEEEEEecCcceecC------------------------------------------cEEEEEe
Confidence 4578999999999999999999995433222 2233443
Q ss_pred -CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC----eEEEEEeeecc
Q psy2776 501 -SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE----TSTIAIYSVVR 573 (803)
Q Consensus 501 -~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~ 573 (803)
.++..|.+..... ...+.+|+.+.|.|.+.|. |. +.+.|+|+|..+...........++ .+.|.|.++..
T Consensus 115 ~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 191 (344)
T 1za6_B 115 SASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL 191 (344)
T ss_dssp SSCCBCCEEEEECC---SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHH
T ss_pred cCCCCCCeEEEccc---cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHc
Confidence 2222222221111 1224689999999999987 54 7999999997642110000011111 25799999988
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+| |.|+|.|.|..+.......+.+..... + ..+. .|.+...++
T Consensus 192 ~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~------------------------~------~~~~-~~~~~~~l~----- 234 (344)
T 1za6_B 192 GT-QTYICNVNHKPSNTKVDKKVEPKSCDK------------------------T------HTCP-PCGGGSSGG----- 234 (344)
T ss_dssp HH-BCEEEEEEEGGGTEEEEEEECCCCC----------------------------------------------------
T ss_pred CC-CcEEEEEEeCCCCccceEeeccccccc------------------------c------cccC-CCCCCcccc-----
Confidence 88 999999999988755444333211000 0 0000 000000000
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCCeEE--EeeCc---
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKRE--IFDGE--- 726 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~~--~~~~~--- 726 (803)
.......+|.+...........|+.++|.|.+.|. | .+.+.|++||.++........ ..++.
T Consensus 235 -----------~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~ 303 (344)
T 1za6_B 235 -----------GSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL 303 (344)
T ss_dssp ---------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEE
T ss_pred -----------ccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEE
Confidence 00011225655544332222346679999999996 4 358999999998864322211 22232
Q ss_pred eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 727 NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 727 ~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
...|.|... ..+|+|.|+|.|.|......
T Consensus 304 ~s~l~i~~~-~~~~~g~YtC~a~~~~l~~~ 332 (344)
T 1za6_B 304 YSKLTVDKS-RWQQGNVFSCSVMHEALHNH 332 (344)
T ss_dssp EEEEEECHH-HHHTTCEEEEEEECTTSTTS
T ss_pred EEEEEEChH-HccCCCeEEEEEEcCCCCCC
Confidence 234666665 34679999999999876543
No 106
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.91 E-value=4.2e-23 Score=200.95 Aligned_cols=173 Identities=21% Similarity=0.372 Sum_probs=144.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....++.+. .....|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 90 (192)
T 2va4_A 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 90 (192)
T ss_dssp EEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEe--CCeeEEEEecCChhcCcEEEEEEEccccccceEEEE
Confidence 456788999999999999999999999999999887666543 345689999999999999999999999988888888
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|..+| .+.
T Consensus 91 ~V~~~p-----------------------------------------------------------------------~~~ 99 (192)
T 2va4_A 91 QVFVQP-----------------------------------------------------------------------HII 99 (192)
T ss_dssp EEEEEE-----------------------------------------------------------------------EEE
T ss_pred EEEccC-----------------------------------------------------------------------ccc
Confidence 886644 232
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeC--CeeccC-----CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLLS-----SPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.. ....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+.. +.++.+........|.|.++ +.+|+|.|+|.|.
T Consensus 100 ~~-~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~ 177 (192)
T 2va4_A 100 QL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV-KLSDSGRYDCEAA 177 (192)
T ss_dssp EE-CCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESC-CGGGCEEEEEEEE
T ss_pred cc-CcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecC-CcccCEEEEEEEE
Confidence 22 234567799999999999999999999998 666653 34566666667789999999 7899999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|.+|..+.++.|.|+
T Consensus 178 n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 178 SRIGGHQKSMYLDIE 192 (192)
T ss_dssp CSSCEEEEEEEEEEC
T ss_pred ecCCceEEEEEEEeC
Confidence 999999999988873
No 107
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.91 E-value=9.7e-22 Score=222.01 Aligned_cols=374 Identities=16% Similarity=0.180 Sum_probs=193.5
Q ss_pred eeEEEEeccccCCeEEEEEEEEccCc-----------cCCCcceeeEEEEcCCCCCCCCeeec-cCcCeeeecCCcEEEE
Q psy2776 98 STTYEVTKLTTKHEYMFRVAAVNAIG-----------TGPASHNTRYVVVKAPVDAEAPVIQE-PLKDSVAGFQSSVTLE 165 (803)
Q Consensus 98 ~~~l~i~~~~~~d~g~y~c~a~~~~g-----------~~~~s~~~~~~~~~~~~~~~~p~i~~-~~~~~~v~~G~~~~L~ 165 (803)
...|.|.+++.+|+|.|.|.+.+..+ ....... ..+.+... ...+|.+.. .+......+|+.+.|.
T Consensus 79 ~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~V~~~-~~~~P~i~~~~~~~~~~~~~~~v~L~ 156 (512)
T 1zvo_C 79 QFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQG-TTVHVSSA-PTKAPDVFPIISGCRHPKDNSPVVLA 156 (512)
T ss_pred EEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCc-eEEEeccc-CCcCCeEEeccCCcccccCCCeEEEE
Confidence 47899999999999999999987642 1011112 22333211 123555542 2221112257899999
Q ss_pred EEECcc-CCC-eeEEEEcCeeccc--e-eEEEecC----eeEEEEecCCCCcceEEEEEEEcCCcCeeeEE---------
Q psy2776 166 CVVSGV-PTP-DIKWYKDDSLIKG--R-NITYENN----VARFTVVNCSESSEGRYTCKATNEAGTAETSC--------- 227 (803)
Q Consensus 166 C~~~g~-p~p-~i~W~~~~~~~~~--~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~--------- 227 (803)
|.+.+. |.| .|.|++++..... . .....++ ...|.|.....+ .|.|+|.|.|..+......
T Consensus 157 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~ 235 (512)
T 1zvo_C 157 CLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKA 235 (512)
T ss_pred EEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCc
Confidence 999985 765 8999997643210 0 1111111 245888888777 9999999999988765443
Q ss_pred --EEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCcc
Q psy2776 228 --TLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPA 305 (803)
Q Consensus 228 --~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (803)
.+.+..+|..... ...+.+.... . ..+.+. .. ..+|...-..-.+.......+.....+
T Consensus 236 ~~~v~l~~pp~~~~~--~~~~~~~~~~-----~---~~g~~~---~~-----~~~~~~~~~~h~~~~~~~~~~~~~~~~- 296 (512)
T 1zvo_C 236 QASSVPTAQPQAEGS--LAKATTAPAT-----T---RNTGRG---GE-----EKKKEKEKEEQEERETKTPECPSHTQP- 296 (512)
T ss_pred CCEEEEeCCCchhcc--ccccccCchh-----h---ccCccc---cc-----ceeccCCcccccccCcccccCCCCCCC-
Confidence 1222211100000 0000000000 0 000000 00 000000000000000000000000011
Q ss_pred ccccccCCceeeeccccceeEEEEe-cC-C-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVEL-SS-P-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
+.+....|....+..|+.+.|.|.+ +. | ...+.|+|+|..+....... ....+..|.|..
T Consensus 297 p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~-------------~~~~~~~gt~~~---- 359 (512)
T 1zvo_C 297 LGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEG-------------LLERHSNGSQSQ---- 359 (512)
T ss_pred CEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceecc-------------ceecCCCCeEEE----
Confidence 1221222333335579999999999 53 4 45999999998865211100 000111222221
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
...|.|.....+|.|.|+|.|.|..+... ..
T Consensus 360 ---------------------------------------~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~--------- 390 (512)
T 1zvo_C 360 ---------------------------------------HSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RL--------- 390 (512)
T ss_pred ---------------------------------------EEEEEEchHHhcCCCeEEEEEEeCCCCCC-ce---------
Confidence 23488988999999999999999876543 11
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeee--cc--CCCCCCccceeeeccccceEEeecceeE-EEEEEcCcCC
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL--QI--QSPPQQPAIKLVDSNLKSQRLSVKSQWK-VEVKYFGFPR 537 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v--~~~p~~~~~~~~~~~~~~~~v~~g~~v~-l~C~~~g~p~ 537 (803)
.+.. .+ ..+|. +.+... .. .|+.+. |.|.+.|+++
T Consensus 391 -------------------------------~~~~~~~~~~~~~p~---v~~~~~--~~----~~~~~~~L~C~~~g~~P 430 (512)
T 1zvo_C 391 -------------------------------MALREPAAQAPVKLS---LNLLAS--SD----PPEAASWLLCEVSGFSP 430 (512)
T ss_pred -------------------------------eEEeecCCCCCCCCE---EEEEcc--Cc----CCCCceEEEEEEeeeCC
Confidence 1100 01 12222 111111 11 688999 9999999655
Q ss_pred C--eeEEeeCCeeecCCCcE--EEEecCCe------EEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEEEe
Q psy2776 538 P--EISWMKNGAEITDSKAC--RIFIDEET------STIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQVL 599 (803)
Q Consensus 538 ~--~v~W~~~g~~i~~~~~~--~~~~~~~~------~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~V~ 599 (803)
+ .+.|+|+|..+...... ......++ +.|.|.....+|.|.|+|.|.|..... .....|.|.
T Consensus 431 ~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 431 PNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred CCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 3 68899999998764211 11222222 456777777777999999999986653 344444443
No 108
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.91 E-value=3.7e-23 Score=201.40 Aligned_cols=174 Identities=26% Similarity=0.348 Sum_probs=144.2
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+... .++.+. .++..|.|.+++.+|+|.|+|.+.|..|. ....
T Consensus 15 ~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 92 (192)
T 2iep_A 15 ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR--ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC 92 (192)
T ss_dssp CEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE--GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEE
T ss_pred cceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc--CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeE
Confidence 3577899999999999999999999999999988753 444443 23458999999999999999999999887 4566
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|..+ |
T Consensus 93 ~~l~v~~~-----------------------------------------------------------------------p 101 (192)
T 2iep_A 93 GALQVKMK-----------------------------------------------------------------------P 101 (192)
T ss_dssp EEEEEEEE-----------------------------------------------------------------------E
T ss_pred EEEEEEeC-----------------------------------------------------------------------C
Confidence 77777653 4
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+..++ .|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~-~~~d~G~Y~C~a~n~~g 177 (192)
T 2iep_A 102 KITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNV-QKEDAGQYRCVAKNSLG 177 (192)
T ss_dssp EEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSC-CGGGCEEEEEEEEETTE
T ss_pred ccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecC-ChhhCEEEEEEEEcCCC
Confidence 4555555677889999999999999999999999999999887776554433 5999999 78999999999999999
Q ss_pred ce-eeeEEEEEEee
Q psy2776 754 SA-THGARVTVDVE 766 (803)
Q Consensus 754 ~~-~~~~~l~V~~~ 766 (803)
.. +..+.|.|.++
T Consensus 178 ~~~s~~~~l~V~~p 191 (192)
T 2iep_A 178 TAYSKLVKLEVEVF 191 (192)
T ss_dssp EEECCCEEEEEEC-
T ss_pred cEEEEEEEEEEEeC
Confidence 98 56788888653
No 109
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=198.80 Aligned_cols=169 Identities=20% Similarity=0.341 Sum_probs=141.0
Q ss_pred cceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCC--cEEEEecCC-------eEEEEEeeeccCcCeEEEEEEEc
Q psy2776 516 KSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSK--ACRIFIDEE-------TSTIAIYSVVRADTSTYTVTATN 585 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~-------~~~L~i~~v~~~dsG~Y~C~a~n 585 (803)
....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+.... ++++....+ .+.|.|.++..+|+|.|+|.|.|
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 89 (195)
T 2c5d_C 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFL 89 (195)
T ss_dssp CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEE
T ss_pred hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEe
Confidence 467889999999999999 99999999999999998763 444444333 57999999999999999999999
Q ss_pred CCCCeEE-EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecc
Q psy2776 586 AAGSTSL-DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHA 664 (803)
Q Consensus 586 ~~g~~s~-s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~ 664 (803)
..|.... .+.|.|..
T Consensus 90 ~~~~~~~~~~~l~V~~---------------------------------------------------------------- 105 (195)
T 2c5d_C 90 GHQTFVSQPGYVGLEG---------------------------------------------------------------- 105 (195)
T ss_dssp TTEEEECCCEEEEECC----------------------------------------------------------------
T ss_pred CCCceecccEEEEEec----------------------------------------------------------------
Confidence 8765433 36666644
Q ss_pred cCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCcee
Q psy2776 665 TLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGD 743 (803)
Q Consensus 665 ~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~ 743 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+...... .....|.|.++ + |+|.
T Consensus 106 -------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~-~--d~G~ 170 (195)
T 2c5d_C 106 -------LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL-N--KTSS 170 (195)
T ss_dssp -------SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCC-S--SCEE
T ss_pred -------CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEccc-c--cCce
Confidence 5667777777889999999999999999999 99999999998766543 45568999988 4 8999
Q ss_pred EEEEEEccCccee-eeEEEEE
Q psy2776 744 YKVVATNELGSAT-HGARVTV 763 (803)
Q Consensus 744 Y~C~a~N~~G~~~-~~~~l~V 763 (803)
|+|.|.|.+|... +.+.|.|
T Consensus 171 Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 171 FSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEcCCCceEEEEEEEEE
Confidence 9999999999995 7888888
No 110
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.90 E-value=3.3e-23 Score=222.01 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=162.8
Q ss_pred CcCeeeecCCcEEEEEEECcc--CCCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGV--PTPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+....+.+|+.+.|.|.+.+. +.+.+.|+|+. ..+. ..++... .+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL 86 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence 345678899999999999876 36789999973 2210 1223322 24578999999
Q ss_pred CCCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 205 SESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
+.+|+|.|+|.+.|..+.......|.|...+.. .
T Consensus 87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~--~-------------------------------------------- 120 (344)
T 1za6_B 87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTK--G-------------------------------------------- 120 (344)
T ss_dssp CGGGCEEEEEEETTTTCEECCCEEEEECSSCCB--C--------------------------------------------
T ss_pred CcccCEEEEEEEecCcceecCcEEEEEecCCCC--C--------------------------------------------
Confidence 999999999999996544444567777642100 0
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-eeeEEeecCeeccccceeEEEEcCcee
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-IQVKWLKKGKEIKESARHIITSRGTQR 361 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~~i~W~~~g~~l~~~~~~~~~~~~~~~ 361 (803)
+.+....+. ..+.+|+.++|.|.+ +. |. +.+.|+|+|..+.........
T Consensus 121 ---------------------P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~------ 172 (344)
T 1za6_B 121 ---------------------PSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL------ 172 (344)
T ss_dssp ---------------------CEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEE------
T ss_pred ---------------------CeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeE------
Confidence 000000111 123569999999999 54 65 799999998765321000000
Q ss_pred EEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEE
Q psy2776 362 KLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCK 441 (803)
Q Consensus 362 ~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 441 (803)
...|.|.. ...|+|.++..+| |.|+|.
T Consensus 173 ---------~~~~~~~~-------------------------------------------~s~L~i~~~~~~d-G~Y~C~ 199 (344)
T 1za6_B 173 ---------QSSGLYSL-------------------------------------------SSVVTVPSSSLGT-QTYICN 199 (344)
T ss_dssp ---------CTTSCEEE-------------------------------------------EEEEEEETTHHHH-BCEEEE
T ss_pred ---------CCCCCEEE-------------------------------------------EEEEEEcHHHcCC-CcEEEE
Confidence 01112211 1248888888878 999999
Q ss_pred eeCCceeeeeecccCCCCceeEEeeeccC--cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceE
Q psy2776 442 ATNEAGTAETRTMWPGLPLSIVVSLRKAD--TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQR 519 (803)
Q Consensus 442 a~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~ 519 (803)
|.|..+....... +.+.... ..+.+ . ..... .........+|. +.+.... ..
T Consensus 200 a~n~~~~~~~~~~---------~~~~v~~~~~~~~~-~-----~~~~~-----l~~~~~~~~~P~---v~~~~~~--~~- 253 (344)
T 1za6_B 200 VNHKPSNTKVDKK---------VEPKSCDKTHTCPP-C-----GGGSS-----GGGSGGQPREPQ---VYTLPPS--RD- 253 (344)
T ss_dssp EEEGGGTEEEEEE---------ECCCCC-------------------------------CCBCCE---EEEECCC--GG-
T ss_pred EEeCCCCccceEe---------ecccccccccccCC-C-----CCCcc-----ccccCCCCcCCE---EEEeCCC--hH-
Confidence 9998775433210 1000000 00000 0 00000 000001122222 1111111 11
Q ss_pred EeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
...|..+.|.|.+.|.++ +.+.|+|+|..+.......+....+ .+.|.|.....+|.|.|+|.|.|.....
T Consensus 254 ~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~ 331 (344)
T 1za6_B 254 ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 331 (344)
T ss_dssp GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence 124667999999999643 5899999998886542222222222 2456666666678999999999986543
No 111
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.89 E-value=2.6e-22 Score=193.63 Aligned_cols=167 Identities=23% Similarity=0.378 Sum_probs=139.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCC--eEEEEEeeeccCcCeEEEEEEEcCCCC-eEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEE--TSTIAIYSVVRADTSTYTVTATNAAGS-TSLD 593 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s 593 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|++..+....+..+..... ...|.|.++..+|+|.|+|.|.|..|. .+..
T Consensus 11 ~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 90 (182)
T 1rhf_A 11 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90 (182)
T ss_dssp EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred ceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEE
Confidence 5778999999999999999999999999999998776555544333 478999999999999999999998775 4466
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|.. +|
T Consensus 91 ~~l~V~~-----------------------------------------------------------------------~p 99 (182)
T 1rhf_A 91 VWLTVEG-----------------------------------------------------------------------VP 99 (182)
T ss_dssp EEEEEEC-----------------------------------------------------------------------SC
T ss_pred EEEEEec-----------------------------------------------------------------------CC
Confidence 7777755 56
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+..... ....|.|.++ +|+|.|+|.|.|.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~---~d~G~Y~C~a~N~~ 169 (182)
T 1rhf_A 100 FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV---TQSTMFSCEAHNLK 169 (182)
T ss_dssp EEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC---SSCEEEEEEEEETT
T ss_pred eEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc---ccCeEEEEEEECCC
Confidence 67777777889999999999999999999 9999999998854421 4568999987 58999999999999
Q ss_pred ccee-eeEEEEEE
Q psy2776 753 GSAT-HGARVTVD 764 (803)
Q Consensus 753 G~~~-~~~~l~V~ 764 (803)
|... .++.|.|+
T Consensus 170 g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 170 GLASSRTATVHLQ 182 (182)
T ss_dssp EEEECCCEEEEEC
T ss_pred CCcccceEEEEeC
Confidence 9984 58888773
No 112
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.89 E-value=2.7e-22 Score=195.13 Aligned_cols=173 Identities=17% Similarity=0.302 Sum_probs=141.1
Q ss_pred ceEEeecceeEEEEEEcCcC-CCeeEEee-CCeeecC-CCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCC-CCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-RPEISWMK-NGAEITD-SKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAA-GSTS 591 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-~~~v~W~~-~g~~i~~-~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g~~s 591 (803)
...+.+|+.+.|.|.+.+.| .+.+.|++ +|..+.. ..++.+.. ......|.|.++..+|+|.|+|.|.|.. +..+
T Consensus 11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 90 (191)
T 1epf_A 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90 (191)
T ss_dssp SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceE
Confidence 57789999999999999987 78999999 8888874 35555443 3567899999999999999999999997 4556
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|..
T Consensus 91 ~~~~l~v~~----------------------------------------------------------------------- 99 (191)
T 1epf_A 91 ATVNVKIFQ----------------------------------------------------------------------- 99 (191)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------------
T ss_pred EEEEEEeec-----------------------------------------------------------------------
Confidence 666666644
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC--CCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS--PKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++....++ .|.|.++ +.+|+|.|+|.|.
T Consensus 100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~-~~~d~G~Y~C~a~ 175 (191)
T 1epf_A 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGI-KKTDEGTYRCEGR 175 (191)
T ss_dssp CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS---CEEETTC-CGGGCEEEEEEEE
T ss_pred CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCC---eEEECCC-ChhhCEEEEEEEE
Confidence 566766777788899999999999999999999999999998643 344433322 5999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|.+|.......+.|.
T Consensus 176 n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 176 ILARGEINFKDIQVI 190 (191)
T ss_dssp EGGGTEEEEEEEEEE
T ss_pred EecceeEEEEEEEEe
Confidence 999888777777764
No 113
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=195.73 Aligned_cols=173 Identities=21% Similarity=0.291 Sum_probs=133.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE--
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-- 591 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-- 591 (803)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+. ....|.|.++..+|+|.|+|.|.|..+...
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 86 (189)
T 2v5t_A 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDF 86 (189)
T ss_dssp SSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred CCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe---cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEE
Confidence 3577899999999999999999999999999887643 333322 234699999999999999999999876543
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|..+|
T Consensus 87 ~~~~l~v~~~p--------------------------------------------------------------------- 97 (189)
T 2v5t_A 87 RDIIVIVNVPP--------------------------------------------------------------------- 97 (189)
T ss_dssp EEEEEEEEEEE---------------------------------------------------------------------
T ss_pred EEEEEEecCCC---------------------------------------------------------------------
Confidence 44455554433
Q ss_pred CCeeEeccc--eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFE--EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~--~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+..... ...+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+..++ ..|.|.++ +.+|+|.|+|.|.
T Consensus 98 --~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~-~~~d~G~Y~C~a~ 172 (189)
T 2v5t_A 98 --AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNI-INSDGGPYVCRAT 172 (189)
T ss_dssp --EEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTT--TEEEECSC-CGGGCEEEEEEEE
T ss_pred --CcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCC--CEEEEcCC-ChhhCeeEEEEEE
Confidence 2222222 346778999999999999999999999999999888776654433 47999999 7899999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|.+|....++.|.|.|
T Consensus 173 n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 173 NKAGEDEKQAFLQVFV 188 (189)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCceeEEEEEEEEe
Confidence 9999999999998864
No 114
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.89 E-value=1.4e-22 Score=215.19 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=162.7
Q ss_pred CCCeeeccCcCeeeecC--CcEEEEEEECcc-C-CCeeEEEEcCeecccee----EEEecC----eeEEEEecCCCCcce
Q psy2776 143 EAPVIQEPLKDSVAGFQ--SSVTLECVVSGV-P-TPDIKWYKDDSLIKGRN----ITYENN----VARFTVVNCSESSEG 210 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G--~~~~L~C~~~g~-p-~p~i~W~~~~~~~~~~~----~~~~~~----~~~L~i~~v~~~d~G 210 (803)
.+|.+...+.......| +.+.|.|.+.|. | .+.|.|+|++..+.... ....++ ...|.|.+...+|+|
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g 85 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 85 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence 34544443322222334 699999999985 4 46899999999876431 111122 236888888888999
Q ss_pred EEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 211 RYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 211 ~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
.|+|.|.|..+....++.+.+...
T Consensus 86 ~Y~C~a~n~~~~~~~~~~~~~~~~-------------------------------------------------------- 109 (323)
T 2wqr_A 86 TYTCQVTYQGHTFEDSTKKCADSN-------------------------------------------------------- 109 (323)
T ss_dssp CEEEEEEETTEEEEEEECCCCCSS--------------------------------------------------------
T ss_pred cEEEEEEeCCCCcceeeecCCCCC--------------------------------------------------------
Confidence 999999998764433322100000
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce---eeEEeecC-eeccccceeEEEEcCceeEEE
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI---QVKWLKKG-KEIKESARHIITSRGTQRKLV 364 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~---~i~W~~~g-~~l~~~~~~~~~~~~~~~~l~ 364 (803)
...+.+....|....+.+|+.+.|.|.+ + .|.+ .+.|+|++ ..+.........
T Consensus 110 ------------~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~--------- 168 (323)
T 2wqr_A 110 ------------PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEK--------- 168 (323)
T ss_dssp ------------GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEE---------
T ss_pred ------------CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCcc---------
Confidence 0001111112233345679999999998 5 4555 99999974 544321111000
Q ss_pred EeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeC
Q psy2776 365 IKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATN 444 (803)
Q Consensus 365 i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~ 444 (803)
...|.|. ....|+|.++..+|+|.|+|.|.|
T Consensus 169 ------~~~g~~~-------------------------------------------~~~~L~I~~~~~~D~G~Y~C~a~n 199 (323)
T 2wqr_A 169 ------QRNGTLT-------------------------------------------VTSTLPVGTRDWIEGETYQCRVTH 199 (323)
T ss_dssp ------CTTSCEE-------------------------------------------EEEEEECCHHHHHTTCCEEEEEEC
T ss_pred ------CCCCCEE-------------------------------------------EEEEEEECHHHccCCCCEEEEEEC
Confidence 0001111 123589999999999999999999
Q ss_pred CceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec--cCCCCCCccceeeeccccceEEee
Q psy2776 445 EAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ--IQSPPQQPAIKLVDSNLKSQRLSV 522 (803)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~~~p~~~~~~~~~~~~~~~~v~~ 522 (803)
..+..... +. +.+. +..+|. +.+..... . ...
T Consensus 200 ~~~~~~~~-----------~~-----------------------------v~~~~~~~~~P~---v~~~~~~~--~-~~~ 233 (323)
T 2wqr_A 200 PHLPRALM-----------RS-----------------------------TTKTSGPRAAPE---VYAFATPE--W-PGS 233 (323)
T ss_dssp TTSSSCEE-----------EE-----------------------------ECCCCSCCBCCE---EEEEECCC--C-TTC
T ss_pred CCCCCCee-----------eE-----------------------------EEccCCCCCCCE---EEEeCCCh--H-Hhc
Confidence 76322211 00 0000 112222 22211111 1 122
Q ss_pred cceeEEEEEEcCcCC-C-eeEEeeCCeeecCCCcEEE----EecC----CeEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 523 KSQWKVEVKYFGFPR-P-EISWMKNGAEITDSKACRI----FIDE----ETSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 523 g~~v~l~C~~~g~p~-~-~v~W~~~g~~i~~~~~~~~----~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|+.+.|.|.+.|.++ + .+.|+|+|..|..+. ... ...+ ..+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 234 g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 999999999998544 3 799999999886532 111 1111 1357999999999999999999999776
No 115
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=205.59 Aligned_cols=190 Identities=23% Similarity=0.328 Sum_probs=143.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+. ..........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 24 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 103 (241)
T 3grw_A 24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103 (241)
T ss_dssp EEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEE
Confidence 467889999999999999999999999999988765332 1122334568999999999999999999999998888888
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe-
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL- 674 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~- 674 (803)
|.|...+ ..+|.
T Consensus 104 l~V~~~~-------------------------------------------------------------------~~~~~~ 116 (241)
T 3grw_A 104 LDVLERS-------------------------------------------------------------------PHRPIL 116 (241)
T ss_dssp EEEECCC-------------------------------------------------------------------CCCCEE
T ss_pred EEEeccC-------------------------------------------------------------------CCCcee
Confidence 8886532 11233
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEee----CCeeccCCCCeEEEe--------eCceEEEEEecCCCCCCce
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR----NNKPLLSSPKKREIF--------DGENIILELKEADSETDAG 742 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~~--------~~~~~~L~i~~v~~~~D~G 742 (803)
+...+....+.+|+.+.|.|.+.|.|.+.+.|++ +|..+..+....... ......|.|.++ +.+|+|
T Consensus 117 ~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G 195 (241)
T 3grw_A 117 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SERDGG 195 (241)
T ss_dssp EECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSC-CGGGCE
T ss_pred ecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcC-CcccCc
Confidence 3334556778899999999999999999999999 888887654432221 123567999999 789999
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccCCCCCc
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~ 774 (803)
.|+|.|.|..|..+.++.|.|..++..|+...
T Consensus 196 ~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~v 227 (241)
T 3grw_A 196 EYLCRATNFIGVAEKAFWLSVHGPRAAEEELV 227 (241)
T ss_dssp EEEEEEECSSCEEEEEEEEEC-----------
T ss_pred EEEEEEecCcceEEEEEEEEecCCCCCCccce
Confidence 99999999999999999999977665555443
No 116
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.88 E-value=1.3e-21 Score=190.77 Aligned_cols=183 Identities=27% Similarity=0.450 Sum_probs=141.3
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+......
T Consensus 11 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-------------------------------------- 52 (194)
T 2a38_A 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP-------------------------------------- 52 (194)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST--------------------------------------
T ss_pred cCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC--------------------------------------
Confidence 3445567779999999999 8889999999999887654210
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
+..+...++...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 53 ----------------------~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~------------------ 92 (194)
T 2a38_A 53 ----------------------GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST------------------ 92 (194)
T ss_dssp ----------------------TCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE------------------
T ss_pred ----------------------ceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEE------------------
Confidence 0112233455679999999999999999999988776652
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
..|.|...+..|.+. .......+.+|+.+.|.|.+.|.|.+.+.|+++|..+.
T Consensus 93 ------------------------~~l~v~~~~~~p~~~---~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~ 145 (194)
T 2a38_A 93 ------------------------AELLVKAETAPPNFV---QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ 145 (194)
T ss_dssp ------------------------EEEEEECCCEEEEEE---ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC
T ss_pred ------------------------EEEEEccCCCCCEEE---eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC
Confidence 233333221111111 11235678899999999999999999999999999998
Q ss_pred CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 551 DSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.+.++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 146 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp CSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 8888888777777899999999999999999999999999999988873
No 117
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.88 E-value=7.3e-22 Score=193.08 Aligned_cols=183 Identities=21% Similarity=0.353 Sum_probs=140.1
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc-eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA-RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.... ++.+..
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---------------------------------- 56 (197)
T 2j8h_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQE---------------------------------- 56 (197)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEE----------------------------------
T ss_pred CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEE----------------------------------
Confidence 445667789999999999 88999999999998876432 221111
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
..++...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 57 ---------------------------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~------------------- 90 (197)
T 2j8h_A 57 ---------------------------FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG------------------- 90 (197)
T ss_dssp ---------------------------ETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEE-------------------
T ss_pred ---------------------------cCCCEEEEEECcCCHHhCEEEEEEEEECCCceeE-------------------
Confidence 1233456899999999999999999998877654
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|....... ........+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 91 -----------------------~~~l~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~ 146 (197)
T 2j8h_A 91 -----------------------TASLEVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID 146 (197)
T ss_dssp -----------------------EEEEEEEEEEEECCSSC-BTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEEC
T ss_pred -----------------------EEEEEEcCCCcCCCCcc-ccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEee
Confidence 22333333222111100 011124667889999999999999999999999999998
Q ss_pred CCCcEEEEecCCeEEEEEee-eccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 551 DSKACRIFIDEETSTIAIYS-VVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~-v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
...++.+........|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 147 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 88888887777789999999 99999999999999999999999999885
No 118
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=4.3e-21 Score=185.41 Aligned_cols=166 Identities=15% Similarity=0.225 Sum_probs=134.9
Q ss_pred ceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...+.+|+.+.|.|.+.+.|.| .+.|+|+|..+...... .....|.|. ..+|+|.|+|.|.|. ....+
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~ 76 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE---PMGTA 76 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST---TSCEE
T ss_pred EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC---cCcEE
Confidence 4678899999999999988877 89999999988765422 124566666 689999999999983 23556
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|.. +|.
T Consensus 77 ~l~V~~-----------------------------------------------------------------------~P~ 85 (184)
T 3b5h_A 77 NIQLHG-----------------------------------------------------------------------PPR 85 (184)
T ss_dssp EEEECC-----------------------------------------------------------------------SCC
T ss_pred EEEEec-----------------------------------------------------------------------CCc
Confidence 666654 556
Q ss_pred eEeccceeEEecCCeEEEEEEEeecC-CCceEEee---CC-eeccC--CCCeEEEeeCceEEEEEecCCC-CCCceeEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASP-APSIVWFR---NN-KPLLS--SPKKREIFDGENIILELKEADS-ETDAGDYKV 746 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~---~~-~~l~~--~~~~~~~~~~~~~~L~i~~v~~-~~D~G~Y~C 746 (803)
+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++ ..+.. +.++.+..++....|.|.++ + .+|+|.|+|
T Consensus 86 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~~d~G~Y~C 164 (184)
T 3b5h_A 86 VKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL-NMEADPGQYRC 164 (184)
T ss_dssp CEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSC-CTTTSSEEEEE
T ss_pred eeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeec-cccccCceEEE
Confidence 66666667889999999999999999 79999999 44 44433 26788887888889999999 8 799999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+|.....+.|.|.
T Consensus 165 ~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 165 NGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp EEEETTEEEEEEEEEEEC
T ss_pred EEEeCCCcceEEEEEEEe
Confidence 999999999999888885
No 119
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=189.57 Aligned_cols=182 Identities=25% Similarity=0.376 Sum_probs=142.1
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....+..+..++
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------------------------------- 60 (197)
T 3lcy_A 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG-------------------------------- 60 (197)
T ss_dssp CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESS--------------------------------
T ss_pred cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCC--------------------------------
Confidence 3445567789999999999 8899999999999888766555444333
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
+...|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 61 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~------------------ 92 (197)
T 3lcy_A 61 ------------------------------RTHTLTVMTEEQEDEGVYTCIATNEVGEVETS------------------ 92 (197)
T ss_dssp ------------------------------SEEEEEEECCSGGGCEEEEEEEECSSCEEEEE------------------
T ss_pred ------------------------------CEEEEEEecCCccCCEEEEEEEECCCCceeEE------------------
Confidence 23458888899999999999999988776652
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
..|.|..+|...... .......+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 93 ------------------------~~l~v~~~p~~~~~~---~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~ 145 (197)
T 3lcy_A 93 ------------------------SKLLLQATPQFHPGY---PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ 145 (197)
T ss_dssp ------------------------EEEEEEEEEEECTTS---CCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC
T ss_pred ------------------------EEEEEEcCCCCCCCc---cCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC
Confidence 223333322211100 00124567889999999999999999999999999999
Q ss_pred CCCcEEEEecCCeEEEEEeeecc-CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 551 DSKACRIFIDEETSTIAIYSVVR-ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 551 ~~~~~~~~~~~~~~~L~i~~v~~-~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+.++.+........|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 146 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 146 NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp CCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 88888887777778999999995 899999999999999999999999865
No 120
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.87 E-value=8.7e-22 Score=193.49 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=131.8
Q ss_pred ceEEeecceeEEEEEEcCcCC-----CeeEEee-CCeeecCCCcEEEEec---CCeEEEEEeeeccCcCeEEEEEEEcCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-----PEISWMK-NGAEITDSKACRIFID---EETSTIAIYSVVRADTSTYTVTATNAA 587 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-----~~v~W~~-~g~~i~~~~~~~~~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~ 587 (803)
...+.+|+.+.|.|.+.+.|. +.+.|+| ++.......+..+..+ .+...|.|.+++.+|+|.|+|.|.|..
T Consensus 11 ~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 90 (202)
T 3bp6_B 11 VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGA 90 (202)
T ss_dssp EEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCC
Confidence 467899999999999999886 8999999 5544444445544332 145899999999999999999999999
Q ss_pred CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 588 GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 588 g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
|..+..+.|.|..++
T Consensus 91 ~~~~~~~~l~V~~~~----------------------------------------------------------------- 105 (202)
T 3bp6_B 91 AWDYKYLTVKVKASY----------------------------------------------------------------- 105 (202)
T ss_dssp EEEEEEEEEEEEBCC-----------------------------------------------------------------
T ss_pred CcceEEEEEEecCCC-----------------------------------------------------------------
Confidence 888888888886532
Q ss_pred CCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 668 ~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..|.+.. ..+.+|+.+.|.|.+.|.|.|.+.|++++.++.. ......++....+.|.++ ..+|+|.|+|.
T Consensus 106 ---~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~i~~v-~~~d~G~Y~C~ 175 (202)
T 3bp6_B 106 ---MRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT--SHIRTPEGLYQVTSVLRL-KPQPSRNFSCM 175 (202)
T ss_dssp ---CCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE--EEEECTTSCEEEEEEEEE-CCCTTCCEEEE
T ss_pred ---CcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCccC--ceeeCCCCCEEEEEEEEE-EcCCCCEEEEE
Confidence 1222211 2456799999999999999999999998876531 222223455567788888 78999999999
Q ss_pred EEccCcceeeeEEEEEEe
Q psy2776 748 ATNELGSATHGARVTVDV 765 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~~ 765 (803)
|.|.+|.....+.|.|..
T Consensus 176 a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 176 FWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp EEETTTTEEEEEEECC--
T ss_pred EEcCCcccccEEEEEecC
Confidence 999999999988888754
No 121
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.87 E-value=4.3e-22 Score=199.94 Aligned_cols=185 Identities=22% Similarity=0.316 Sum_probs=143.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEE-EecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRI-FIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~-~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....++.. ........|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 28 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~ 107 (231)
T 3ojm_B 28 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107 (231)
T ss_dssp CEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEE
Confidence 56789999999999999999999999999998876533211 22234568999999999999999999999998888888
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|...+ ..+|.+
T Consensus 108 l~V~~~~-------------------------------------------------------------------~~~p~~ 120 (231)
T 3ojm_B 108 LDVVERS-------------------------------------------------------------------RHRPIL 120 (231)
T ss_dssp EEEECCC-------------------------------------------------------------------CCCCEE
T ss_pred EEEEcCC-------------------------------------------------------------------CCCCce
Confidence 8886532 012333
Q ss_pred Ee-ccceeEEecCCeEEEEEEEeecCCCceEEee----CCeeccCCCCeEEE--e-----eCceEEEEEecCCCCCCcee
Q psy2776 676 IE-RFEEKTVKEKGTIRLMAKVKASPAPSIVWFR----NNKPLLSSPKKREI--F-----DGENIILELKEADSETDAGD 743 (803)
Q Consensus 676 ~~-~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~----~~~~l~~~~~~~~~--~-----~~~~~~L~i~~v~~~~D~G~ 743 (803)
.. .+....+.+|+.+.|.|.+.|.|.+.+.|++ +|..+..+...... . ......|.|.++ +.+|+|.
T Consensus 121 ~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~ 199 (231)
T 3ojm_B 121 QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV-TEADAGE 199 (231)
T ss_dssp CTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSC-CGGGCEE
T ss_pred eeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecC-CHHHCeE
Confidence 32 2445778899999999999999999999999 88877655432221 1 112346999999 7899999
Q ss_pred EEEEEEccCcceeeeEEEEEEeeccC
Q psy2776 744 YKVVATNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 744 Y~C~a~N~~G~~~~~~~l~V~~~~~~ 769 (803)
|+|.|.|..|..+.++.|.|..++..
T Consensus 200 Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 200 YICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCC--
T ss_pred EEEEEEeccceEeeEEEEEEecCCCC
Confidence 99999999999999999999654443
No 122
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.87 E-value=7.8e-22 Score=195.17 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=130.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+. ...|.|.+++.+|+|.|+|.|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~v~~~D~G~Y~C~~~ 85 (212)
T 1f97_A 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTRKDNGEYTCMVS 85 (212)
T ss_dssp EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCGGGCEEEEEEEE
T ss_pred CeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee----ceeEEEcccCcccCeEEEEEEE
Confidence 5778999999999999999999999999886531 12333322 2689999999999999999999
Q ss_pred cCCC--CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 585 NAAG--STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 585 n~~g--~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|..| ..+..+.|.|..+|
T Consensus 86 ~~~g~~~~~~~~~l~V~~~p------------------------------------------------------------ 105 (212)
T 1f97_A 86 EEGGQNYGEVSIHLTVLVPP------------------------------------------------------------ 105 (212)
T ss_dssp ETTSSSEEEEEEEEEEEBCC------------------------------------------------------------
T ss_pred ccCCCcccEEEEEEEEEcCC------------------------------------------------------------
Confidence 9977 45666777776532
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEE-EeecCCCceEEeeCCe-eccCCCCe-------EEEeeCceEEEEEe
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAK-VKASPAPSIVWFRNNK-PLLSSPKK-------REIFDGENIILELK 733 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~~~-~l~~~~~~-------~~~~~~~~~~L~i~ 733 (803)
.+...+....+.+|+.+.|.|. +.|.|.|.+.|++++. ++..+... ..........|.|.
T Consensus 106 -----------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~ 174 (212)
T 1f97_A 106 -----------SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174 (212)
T ss_dssp -----------CCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEES
T ss_pred -----------CCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEE
Confidence 2333333456889999999999 7999999999999999 88654331 12223344579999
Q ss_pred cCCCCCCceeEEEEEEccCcce--eeeEEEEEE
Q psy2776 734 EADSETDAGDYKVVATNELGSA--THGARVTVD 764 (803)
Q Consensus 734 ~v~~~~D~G~Y~C~a~N~~G~~--~~~~~l~V~ 764 (803)
++ +.+|+|.|+|.|.|.+|.. +..+.|.|.
T Consensus 175 ~~-~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 175 PV-TAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp SC-CGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred ec-ChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 99 7999999999999999999 445555553
No 123
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=191.89 Aligned_cols=187 Identities=18% Similarity=0.251 Sum_probs=129.6
Q ss_pred eeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 315 VTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
...+.+|+.+.|.|.+ +.|.+++.|+|||+++..+.+..+..++.
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~--------------------------------- 57 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN--------------------------------- 57 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTT---------------------------------
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCC---------------------------------
Confidence 3456679999999998 47999999999999998776655543321
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
++...|.|.+++.+|+|.|+|.|.|..+..... +.+..
T Consensus 58 ---------------------------~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~-----------~~~~~---- 95 (207)
T 3rbs_A 58 ---------------------------TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST-----------VVLVG---- 95 (207)
T ss_dssp ---------------------------TCEEEEEESCCCGGGCEEEEEEEEETTEEEEEE-----------EEECT----
T ss_pred ---------------------------CCEEEEEECCCChhhCEEEEEEEECCCeEEEEE-----------EEEEc----
Confidence 134458888888999999999998833322221 10000
Q ss_pred cCCchhhhhcccccccccccceeeecc-----CCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCCeeEEeeCC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQI-----QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRPEISWMKNG 546 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v-----~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~g 546 (803)
..+...+. ...+.+ ..+|.+. ..+ ...+.+|+.+.|.|.+.|. |.|.++|+|+|
T Consensus 96 --~~~~~~~~-----------~~~~~~~~~~~~~~P~~~------~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g 155 (207)
T 3rbs_A 96 --DVFKKLQK-----------EAEFQRQEWIRKQGPHFV------EYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE 155 (207)
T ss_dssp --HHHHHHHH-----------HHHHHHHHHHHHTSSEEE------EEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETT
T ss_pred --cchhhhcc-----------cccccccccccCCCCceE------ecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECC
Confidence 00000000 000000 1133221 111 3678899999999999999 99999999999
Q ss_pred eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 547 AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 547 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
..|..+.++ ....+..+|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus 156 ~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 156 REISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp EEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 999876543 22334568999999999999999999999999999998865
No 124
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=190.68 Aligned_cols=180 Identities=18% Similarity=0.257 Sum_probs=138.3
Q ss_pred cceEEeecceeEEEEE-EcCcCC-CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVK-YFGFPR-PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~-~~g~p~-~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|. +.+.|. +.+.|++++..+................|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 95 (201)
T 3s97_C 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF 95 (201)
T ss_dssp CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchh
Confidence 3578899999999999 889999 99999999987753322222333345689999999999999999999977665432
Q ss_pred ---EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 594 ---LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 594 ---~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
+.+.+... .....
T Consensus 96 ~~~~~~~~~~~----------------------------------------------------------------~~~~~ 111 (201)
T 3s97_C 96 SKFIPLIPIPE----------------------------------------------------------------RTTKP 111 (201)
T ss_dssp CCCEEEEEECC----------------------------------------------------------------SSCCC
T ss_pred hcccceeeccc----------------------------------------------------------------cccCC
Confidence 22222110 00112
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .+...+ ..|.|.++ +.+|+|.|+|.|.|
T Consensus 112 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~~~--~~L~i~~v-~~~d~G~Y~C~a~n 186 (201)
T 3s97_C 112 YPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSG--AVLKIFNI-QLEDEGIYECEAEN 186 (201)
T ss_dssp EEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEETTT--TEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eecCCC--CEEEEccC-ChhhCEEEEEEEEe
Confidence 25666666667889999999999999999999999999999876542 223233 37999999 78999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
.+|..+.++.|.|+
T Consensus 187 ~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 187 IRGKDKHQARIYVQ 200 (201)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred cCCceeeeEEEEEe
Confidence 99999999999885
No 125
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=191.11 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=140.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~ 594 (803)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+..+ ....|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 26 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~ 96 (218)
T 3k0w_A 26 ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96 (218)
T ss_dssp CCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCE
T ss_pred CCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEE
Confidence 3678899999999999999999999999999988654 24689999999999999999999998764 5557
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|...+.. ...........+|.
T Consensus 97 ~l~V~~~~~~--------------------------------------------------------~~~~~~~~~~~~p~ 120 (218)
T 3k0w_A 97 QLDVCDIPES--------------------------------------------------------FQRSVDGVSESKLQ 120 (218)
T ss_dssp EEEEECCCGG--------------------------------------------------------GCTTCCSBCCSSCE
T ss_pred EEEEEccCcc--------------------------------------------------------cccccccccCCCce
Confidence 7777553200 00000011223577
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.+ ..|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 121 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v-~~~d~G~Y~C~a~n~~g~ 190 (218)
T 3k0w_A 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYV-DLEHQGTYWCHVYNDRDS 190 (218)
T ss_dssp EEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSC-CGGGCEEEEEEEECSSCE
T ss_pred EEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeec-ChhcCEEEEEEEEcCCCC
Confidence 88888888999999999999999999999999999999866532 36999999 789999999999999998
Q ss_pred -eeeeEEEEEEe
Q psy2776 755 -ATHGARVTVDV 765 (803)
Q Consensus 755 -~~~~~~l~V~~ 765 (803)
.+..+.|.|..
T Consensus 191 ~~s~~~~l~V~~ 202 (218)
T 3k0w_A 191 QDSKKVEIIIDE 202 (218)
T ss_dssp EECCCEEEEECC
T ss_pred ceeeeEEEEEeC
Confidence 57788888854
No 126
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.86 E-value=8e-21 Score=184.67 Aligned_cols=174 Identities=25% Similarity=0.396 Sum_probs=134.8
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+....+..+.
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~------------------------------------ 54 (192)
T 2va4_A 11 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK------------------------------------ 54 (192)
T ss_dssp EEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEE------------------------------------
T ss_pred CcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEe------------------------------------
Confidence 345667789999999999 7899999999999988765443322
Q ss_pred eecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCc
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADT 471 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 471 (803)
.+...|.|.+++.+|+|.|+|.+.+..+....
T Consensus 55 ----------------------------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~-------------------- 86 (192)
T 2va4_A 55 ----------------------------GSNTELTVRNIINSDGGPYVCRATNKAGEDEK-------------------- 86 (192)
T ss_dssp ----------------------------TTTTEEEECSCCGGGCEEEEEEEEETTEEEEE--------------------
T ss_pred ----------------------------CCeeEEEEecCChhcCcEEEEEEEccccccce--------------------
Confidence 22235888999999999999999998877665
Q ss_pred ccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee
Q psy2776 472 RVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI 549 (803)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i 549 (803)
.+.|.|..+|.+... ....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+
T Consensus 87 ----------------------~~~l~V~~~p~~~~~-------~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~ 137 (192)
T 2va4_A 87 ----------------------QAFLQVFVQPHIIQL-------KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTF 137 (192)
T ss_dssp ----------------------EEEEEEEEEEEEEEE-------CCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEE
T ss_pred ----------------------EEEEEEEccCccccc-------CcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCcee
Confidence 333444444432111 134567799999999999999999999998 6666
Q ss_pred cC-----CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 550 TD-----SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 550 ~~-----~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.. ..++.+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 138 TEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp CTTCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred eccccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 54 245555555667899999999999999999999999999999998873
No 127
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.86 E-value=1.3e-21 Score=194.65 Aligned_cols=175 Identities=22% Similarity=0.334 Sum_probs=134.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeE--EEEEeeeccCcCeEEEEEEEcCCCCe-
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETS--TIAIYSVVRADTSTYTVTATNAAGST- 590 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~--~L~i~~v~~~dsG~Y~C~a~n~~g~~- 590 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.... ..++....+.. .|.|.++..+|+|.|+|.|.|..|..
T Consensus 17 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~ 96 (217)
T 2vr9_A 17 TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96 (217)
T ss_dssp CCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEE
T ss_pred CceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccc
Confidence 35778999999999999999999999999999887642 22333332222 23688999999999999999988765
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
+..+.|.|...
T Consensus 97 ~~~~~l~v~~~--------------------------------------------------------------------- 107 (217)
T 2vr9_A 97 SRHASLQIAVL--------------------------------------------------------------------- 107 (217)
T ss_dssp CCCEEEEECEE---------------------------------------------------------------------
T ss_pred cccceEEEEEe---------------------------------------------------------------------
Confidence 33556665442
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccC--------CCCeEEEeeCceEEEEEecCCCCCCc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLS--------SPKKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~--------~~~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
+|.+...+....+.+|+.+.|.|.+ .|.|.+.+.|+++|.++.. ..++.... . ..|.|.++ +.+|+
T Consensus 108 -~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~L~i~~~-~~~d~ 182 (217)
T 2vr9_A 108 -RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD-G--GNLLISNV-EPIDE 182 (217)
T ss_dssp -CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEET-T--TEEEESSC-CSTTC
T ss_pred -CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecC-C--CcEEEeeC-CHHHC
Confidence 2333344456778899999999999 8999999999999999873 33333322 2 26999999 79999
Q ss_pred eeEEEEEEccCcceeeeEEEEEE
Q psy2776 742 GDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 742 G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.|+|.|.|.+|....+..+.+.
T Consensus 183 G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 183 GNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEEEEEcccceeccccEEEEE
Confidence 99999999999999877666664
No 128
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.86 E-value=3.5e-21 Score=189.26 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=123.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.|.+. +.|+|+|..+... ...|.|.+++.+|+|.|+|.|.|. ..+..+.
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~----------~~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~ 83 (204)
T 3sgj_C 16 WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ----------ASSYFIDAATVDDSGEYRCQTQLS--TLSDPVQ 83 (204)
T ss_dssp CSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC----------SSEEEESSCCGGGCEEEEEEETTS--BCCCCEE
T ss_pred CeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC----------ccEEEEecccccCCEEEEEEeCCC--cccccEE
Confidence 36789999999999999998875 9999999988653 268999999999999999999985 3444566
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. +|.+
T Consensus 84 l~V~~-----------------------------------------------------------------------~p~~ 92 (204)
T 3sgj_C 84 LEVHI-----------------------------------------------------------------------GWLL 92 (204)
T ss_dssp EEEEC-----------------------------------------------------------------------SSEE
T ss_pred EEEec-----------------------------------------------------------------------CceE
Confidence 66644 3333
Q ss_pred EeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc-cCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN-ELG 753 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N-~~G 753 (803)
...+ ...+.+|+.+.|.|.+.+. |.+.+.|+++|..+.. ......|.|.++ +.+|+|.|+|.|.| ..+
T Consensus 93 ~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~--------~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~~~ 162 (204)
T 3sgj_C 93 LQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY--------FHHNSDFYIPKA-TLKDSGSYFCRGLVGSKN 162 (204)
T ss_dssp EECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE--------EEECCCEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred ecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec--------ccCCceEEECcC-CcccCEEEEEEEEeCCCc
Confidence 3333 3678899999999999766 6688999999998632 122347999999 78999999999999 566
Q ss_pred ceeeeEEEEEEeec
Q psy2776 754 SATHGARVTVDVEK 767 (803)
Q Consensus 754 ~~~~~~~l~V~~~~ 767 (803)
..+..+.|.|..++
T Consensus 163 ~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 163 VSSETVQITITQGL 176 (204)
T ss_dssp EECCCEEEEEEC--
T ss_pred eecCcEEEEEeCcC
Confidence 67888888886543
No 129
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.86 E-value=2.8e-21 Score=191.57 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=124.6
Q ss_pred cceEEeec--ceeEEEEEEcCcCCCeeEEeeC---CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 516 KSQRLSVK--SQWKVEVKYFGFPRPEISWMKN---GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 516 ~~~~v~~g--~~v~l~C~~~g~p~~~v~W~~~---g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
....+.+| +.+.|.|.+.+ |.+.+.|+++ |..+..+.++... ....|.|.+++.+|+|.|+|.|.|..+..
T Consensus 15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~ 90 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCEAKINDESY 90 (213)
T ss_dssp EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE---TTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc---CCccEEEccCChhcCceEEEEEEECCeeE
Confidence 35778899 99999999986 7899999884 6666655444332 23469999999999999999999854432
Q ss_pred EE-EEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCC
Q psy2776 591 SL-DLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSP 669 (803)
Q Consensus 591 s~-s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~ 669 (803)
.. .+.|.|...+
T Consensus 91 ~s~~~~l~v~~~~------------------------------------------------------------------- 103 (213)
T 2x1w_L 91 QSIMYIVVVVGYR------------------------------------------------------------------- 103 (213)
T ss_dssp ECCCEEEEECBCC-------------------------------------------------------------------
T ss_pred EEEEEEEEEeCCc-------------------------------------------------------------------
Confidence 22 2555553211
Q ss_pred CCCCeeE-eccceeEEecCCeEEEEEEEeecCC--CceEEeeCCeeccCCCC-eEEEe-------eCceEEEEEecCCCC
Q psy2776 670 GQAPLFI-ERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNNKPLLSSPK-KREIF-------DGENIILELKEADSE 738 (803)
Q Consensus 670 ~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~~~l~~~~~-~~~~~-------~~~~~~L~i~~v~~~ 738 (803)
+|.+. .......+.+|++++|.|.+.|.|. +.+.|+++|..+..... ..... .....+|.|.++ +.
T Consensus 104 --~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~ 180 (213)
T 2x1w_L 104 --IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TR 180 (213)
T ss_dssp --EEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSC-CG
T ss_pred --ccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCC-Cc
Confidence 23233 3333458999999999999999654 47999999887532211 00100 122457999999 79
Q ss_pred CCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 739 TDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+|+|.|+|.|.|..|..++++.|.|.
T Consensus 181 ~D~G~Y~C~a~N~~g~~~~~~~l~V~ 206 (213)
T 2x1w_L 181 SDQGLYTCAASSGLMTKKNSTFVRVH 206 (213)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ccCEEEEEEEecCCCcEEEEEEEEEe
Confidence 99999999999999999999999985
No 130
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.86 E-value=2.1e-20 Score=185.10 Aligned_cols=180 Identities=18% Similarity=0.349 Sum_probs=137.6
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeecc--ceeEEE---ecCeeEEEEecCCC-CcceEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIK--GRNITY---ENNVARFTVVNCSE-SSEGRYTCK 215 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~--~~~~~~---~~~~~~L~i~~v~~-~d~G~Y~C~ 215 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+. ..++.. .++...|.|.++.. +|+|.|+|.
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 83 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV 83 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence 467889988999999999999999999999999999999998885 222222 23457899999999 999999999
Q ss_pred EEcCCcC-eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 216 ATNEAGT-AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 216 a~n~~g~-~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
+.|..|. ...++.|.|...+..+...
T Consensus 84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~----------------------------------------------------- 110 (212)
T 2yd1_A 84 AENGVGDAVSADATLTIYEGDKTPAGF----------------------------------------------------- 110 (212)
T ss_dssp EECSSSCEEEEEEEEEEECTTCSCTTC-----------------------------------------------------
T ss_pred EEeCCCCeEEeeEEEEEecccCCCCCC-----------------------------------------------------
Confidence 9999998 6677888887653211100
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDE 373 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~ 373 (803)
+ .+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..........+
T Consensus 111 -----------p-~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~---------------- 162 (212)
T 2yd1_A 111 -----------P-VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD---------------- 162 (212)
T ss_dssp -----------C-EEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET----------------
T ss_pred -----------C-eeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC----------------
Confidence 1 11112333456679999999999 899999999999988865322111111
Q ss_pred ccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 374 TDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 374 g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
+ .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 163 -----------------------------------------------~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s 191 (212)
T 2yd1_A 163 -----------------------------------------------G--FLQIENSREEDQGKYECVAENSMGTEHS 191 (212)
T ss_dssp -----------------------------------------------T--EEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred -----------------------------------------------C--eEEEccCChhhCEEEEEEeecCCCceeE
Confidence 1 4888999999999999999999998876
No 131
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.86 E-value=2.7e-20 Score=184.40 Aligned_cols=182 Identities=18% Similarity=0.282 Sum_probs=141.5
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEE---e-cCeeEEEEecC-CCCcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY---E-NNVARFTVVNC-SESSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~-~~~~~L~i~~v-~~~d~G~Y~C~a 216 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+....... . +....|.|.++ ..+|+|.|+|.+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 357888888888999999999999999999999999999999887543222 1 34578999999 599999999999
Q ss_pred EcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 217 TNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.|..|....++.|.|...+..+..
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~~~-------------------------------------------------------- 107 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIPRG-------------------------------------------------------- 107 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCCTT--------------------------------------------------------
T ss_pred EcCCCcEEEEEEEEEeccCccCCC--------------------------------------------------------
Confidence 999998888888888765311110
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeecccc---ceeEEEEcCceeEEEEeecCCCC
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKES---ARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~---~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
...+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+ .++.....+....|.|.++..+|
T Consensus 108 ---------~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 178 (212)
T 2yd6_A 108 ---------FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178 (212)
T ss_dssp ---------CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGG
T ss_pred ---------cceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCccc
Confidence 0011112333456679999999999 8999999999999998754 34555555667889999999999
Q ss_pred CccEEEEEecccccee
Q psy2776 373 ETDIGVLALNVKSVSK 388 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~ 388 (803)
.|.|+|.|.|..|...
T Consensus 179 ~G~Y~C~a~N~~G~~~ 194 (212)
T 2yd6_A 179 QGKYECVATNSAGTRY 194 (212)
T ss_dssp CEEEEEEEEETTEEEE
T ss_pred CEEEEEEEECCCCccc
Confidence 9999999999887643
No 132
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.85 E-value=2.4e-21 Score=197.91 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=120.4
Q ss_pred cceEEeecceeEEEEEEcCcC-----CCeeEEeeCC--eee----------cC--CCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFP-----RPEISWMKNG--AEI----------TD--SKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g--~~i----------~~--~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
....+.+|+.+.|.|.+.+.| .+.+.|+|++ ..+ .. ..++.+........|.|.+++.+|+
T Consensus 46 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 125 (254)
T 2c1o_A 46 LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDL 125 (254)
T ss_dssp SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred ceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccC
Confidence 357889999999999999988 4899999843 222 11 2466665555677999999999999
Q ss_pred eEEEEEEEcCCCCeE-EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 577 STYTVTATNAAGSTS-LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s-~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|+|.|.|..+... ....|.|...
T Consensus 126 G~Y~C~a~n~~~~~~~~~~~l~V~~~------------------------------------------------------ 151 (254)
T 2c1o_A 126 GIYYCVQGSHFPPTFGAGTKLELKRA------------------------------------------------------ 151 (254)
T ss_dssp SEEEEEECSSSSCEEBCCEEEEECCC------------------------------------------------------
T ss_pred EEEEEEEEcCcceEecCCEEEEECCC------------------------------------------------------
Confidence 999999999865421 2234544321
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCC-C-eEEEe--eC---c
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSP-K-KREIF--DG---E 726 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~-~-~~~~~--~~---~ 726 (803)
..+|.+...+....+..|+.++|.|.+.|. |+ +.+.|+|+|.++..+. . ..... ++ .
T Consensus 152 --------------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~ 217 (254)
T 2c1o_A 152 --------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM 217 (254)
T ss_dssp --------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEE
T ss_pred --------------CCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEE
Confidence 114555544333333468899999999985 44 3599999999886551 1 11111 11 1
Q ss_pred eEEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 727 NIILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 727 ~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
...|.|.++ ..+|+|.|+|.|.|.....
T Consensus 218 ~~~L~i~~~-~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 218 SSTLTLTKD-EYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp EEEEEEEHH-HHHTCCEEEEEEECTTCSS
T ss_pred EEEEEeccc-cccCCCeEEEEEEcCCCCC
Confidence 467999999 6899999999999988765
No 133
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.85 E-value=2.6e-20 Score=180.96 Aligned_cols=170 Identities=23% Similarity=0.369 Sum_probs=132.9
Q ss_pred ceeeeccccceeEEEEe-cCCc--eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 314 SVTLVPHLGDATFQVEL-SSPD--IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 314 ~~~~~~~g~~~~l~C~~-~~p~--~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.......|+.+.|.|.+ +.|. +.+.|+|+|..+.......
T Consensus 11 ~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~------------------------------------- 53 (190)
T 2wv3_A 11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA------------------------------------- 53 (190)
T ss_dssp CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-------------------------------------
T ss_pred eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-------------------------------------
Confidence 33333339999999999 6766 8999999998886532210
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
....|.|.+++.+|+|.|+|.+.|. +....
T Consensus 54 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~------------------- 83 (190)
T 2wv3_A 54 ------------------------------SNMEYRINKPRAEDSGEYHCVYHFV-SAPKA------------------- 83 (190)
T ss_dssp ------------------------------SEEEEEESSCCGGGCEEEEEEEEET-TEEEE-------------------
T ss_pred ------------------------------ccEEEEEecCCcccCEEEEEEEEeC-Ccccc-------------------
Confidence 2245888999999999999999988 55444
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEee--CCee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAE 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~ 548 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.|.+.|++ +|..
T Consensus 84 -----------------------~~~l~V~~~p~~~~------~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~ 134 (190)
T 2wv3_A 84 -----------------------NATIEVKAAPDITG------HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVF 134 (190)
T ss_dssp -----------------------EEEEEEECCCEEEE------ECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEE
T ss_pred -----------------------cEEEEEecCCcccc------cCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCce
Confidence 45556666654321 1234678899999999999999999999999 7877
Q ss_pred ec---CCCcEEEEecCCeEEEEEeeec-cCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 549 IT---DSKACRIFIDEETSTIAIYSVV-RADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 549 i~---~~~~~~~~~~~~~~~L~i~~v~-~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+. ...++.+......+.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred eeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 65 4466777666677899999999 799999999999999999999998885
No 134
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.85 E-value=5e-21 Score=186.18 Aligned_cols=173 Identities=28% Similarity=0.481 Sum_probs=134.7
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .+.........|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 3567788778888899999999999999999999999999988763 34455555568999999999999999999999
Q ss_pred CcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 220 AGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 220 ~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
.|.. ...+.|.|...|..
T Consensus 85 ~~~~~~~~~~l~v~~~p~~------------------------------------------------------------- 103 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKI------------------------------------------------------------- 103 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEE-------------------------------------------------------------
T ss_pred CCceeEeEEEEEEEeCCcc-------------------------------------------------------------
Confidence 8874 45567777665310
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....+..+..++
T Consensus 104 -----------~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~------------------- 153 (192)
T 2iep_A 104 -----------TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG------------------- 153 (192)
T ss_dssp -----------EECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS-------------------
T ss_pred -----------ccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC-------------------
Confidence 001223345679999999999 8899999999999988765443332221
Q ss_pred EEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 378 VLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 378 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
.|.|.++..+|+|.|+|.|.|..|....
T Consensus 154 ----------------------------------------------~L~i~~~~~~d~G~Y~C~a~n~~g~~~s 181 (192)
T 2iep_A 154 ----------------------------------------------SLRIHNVQKEDAGQYRCVAKNSLGTAYS 181 (192)
T ss_dssp ----------------------------------------------CEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred ----------------------------------------------cEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence 3888888999999999999999887755
No 135
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.85 E-value=1e-21 Score=194.54 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=130.3
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEee----------------CCeeecC-----CCcEEEEe---cCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMK----------------NGAEITD-----SKACRIFI---DEETSTIAI 568 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~----------------~g~~i~~-----~~~~~~~~---~~~~~~L~i 568 (803)
...+.+|+.+.|.|.+.+.| .+.+.|++ ++..+.. ..+..+.. ..+..+|.|
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i 88 (214)
T 3jz7_A 9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV 88 (214)
T ss_dssp EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence 57789999999999999887 46999998 4444332 22333321 224578999
Q ss_pred eeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 569 ~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
.+++.+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus 89 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p---------------------------------------------- 122 (214)
T 3jz7_A 89 TNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP---------------------------------------------- 122 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----------------------------------------------
T ss_pred ccCChhhCeEEEEEEEeCCCccccEEEEEEEcCC----------------------------------------------
Confidence 9999999999999999999988888888886633
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCC--eeccCCCCeEEEeeC
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNN--KPLLSSPKKREIFDG 725 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~--~~l~~~~~~~~~~~~ 725 (803)
.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++ ..+..... ...
T Consensus 123 -------------------------~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~----~~~ 173 (214)
T 3jz7_A 123 -------------------------SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL----AEM 173 (214)
T ss_dssp -------------------------BSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG----GGT
T ss_pred -------------------------CCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce----ecc
Confidence 22222333447889999999999 89999999999954 33322211 111
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
....|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 174 ~~~~L~i~~~-~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 174 TSPVISVKNA-SSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp TSSEEEECSC-CGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CCCEEEEecC-CHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 2238999999 7999999999999999999998888874
No 136
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.85 E-value=4.1e-21 Score=190.02 Aligned_cols=176 Identities=26% Similarity=0.341 Sum_probs=134.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc----EEEEecCCeE---EEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA----CRIFIDEETS---TIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~----~~~~~~~~~~---~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..... .......+.. .|.|.++..+|+|.|+|.|.|..|
T Consensus 17 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g 96 (212)
T 2v9r_A 17 SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96 (212)
T ss_dssp CCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTE
T ss_pred CceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCC
Confidence 357789999999999999999999999999998865421 1222222221 344567799999999999999887
Q ss_pred Ce-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCC
Q psy2776 589 ST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLG 667 (803)
Q Consensus 589 ~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~ 667 (803)
.. +..+.|.|...
T Consensus 97 ~~~~~~~~l~V~~~------------------------------------------------------------------ 110 (212)
T 2v9r_A 97 EAVSHDASLEVAIL------------------------------------------------------------------ 110 (212)
T ss_dssp EEECCCEEEEECEE------------------------------------------------------------------
T ss_pred ceeecceEEEEEec------------------------------------------------------------------
Confidence 65 44566666542
Q ss_pred CCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 668 SPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 668 ~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.+...+....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+.......... +. .|.|.++ +.+|+|.|+|
T Consensus 111 ----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-~~--~L~i~~~-~~~d~G~Y~C 182 (212)
T 2v9r_A 111 ----RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-GG--KLMITYT-RKSDAGKYVC 182 (212)
T ss_dssp ----CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-TT--EEEESSC-CGGGCEEEEE
T ss_pred ----cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-CC--eEEEeeC-CHhhCeeEEE
Confidence 2233344456678899999999999 899999999999999998665443333 33 6999999 7899999999
Q ss_pred EEEccCcceee-eEEEEEEe
Q psy2776 747 VATNELGSATH-GARVTVDV 765 (803)
Q Consensus 747 ~a~N~~G~~~~-~~~l~V~~ 765 (803)
.|.|.+|.... .+.|.|..
T Consensus 183 ~a~N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 183 VGTNMVGERESEVAELTVLE 202 (212)
T ss_dssp EEEETTEEEECCCEEEEEEC
T ss_pred EEecccCceecceEEEEEEe
Confidence 99999999754 47888853
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.85 E-value=5.6e-22 Score=212.64 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=137.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCe-EEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTS-TYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG-~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.+.+.|++++..+...... ......+.|.|.++..+|+| .|+|.|.|..|..+.++.
T Consensus 167 ~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~ 244 (347)
T 2ifg_A 167 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ 244 (347)
T ss_dssp SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred ceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEE
Confidence 567889999999999999999999999998765432111 12335689999999999999 999999999999888888
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|..+| .+
T Consensus 245 l~V~~~P-----------------------------------------------------------------------~i 253 (347)
T 2ifg_A 245 VNVSFPA-----------------------------------------------------------------------SV 253 (347)
T ss_dssp CCCBEEE-----------------------------------------------------------------------EE
T ss_pred EEEcCCC-----------------------------------------------------------------------ee
Confidence 8886644 22
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-------CceEEEEEecCCCCCCceeEEEEE
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-------GENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
....+.+|+.++|.|.+.|.|.|.+.|+++|..+..+........ ....+|.|.++ +.+|+|.|+|.|
T Consensus 254 ----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a 328 (347)
T 2ifg_A 254 ----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLA 328 (347)
T ss_dssp ----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSC-CGGGCEEEEEEE
T ss_pred ----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCC-CcccCceEEEEE
Confidence 112245689999999999999999999999999986655433321 23567999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|.+|.++.++.|.|.
T Consensus 329 ~N~~G~~~~~~~l~V~ 344 (347)
T 2ifg_A 329 ANPFGQASASIMAAFM 344 (347)
T ss_dssp EETTEEEEEEEEECSC
T ss_pred ecCCCceeeEEEEEec
Confidence 9999999999888874
No 138
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=186.49 Aligned_cols=173 Identities=10% Similarity=0.100 Sum_probs=128.2
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC--CeEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG--STSLDLSL 596 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g--~~s~s~~l 596 (803)
.+.+|++++|.|.+.+ |.+.+.|+|+|..+.... ...........|.|.+++.+|+|.|+|.|.|..| ..+..+.|
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l 92 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLEL 92 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEE
Confidence 6789999999999998 778999999998775421 1111124568999999999999999999999987 34556666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|...+ .+|.+.
T Consensus 93 ~V~~~~--------------------------------------------------------------------~~p~~~ 104 (196)
T 3p2t_A 93 VMTGAY--------------------------------------------------------------------SKPTLS 104 (196)
T ss_dssp EEECSS--------------------------------------------------------------------CCCEEE
T ss_pred EecCCC--------------------------------------------------------------------CCCEEE
Confidence 664421 145554
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEeeCceEEEEEecCCCCCCceeEEEEEEccCc--
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIFDGENIILELKEADSETDAGDYKVVATNELG-- 753 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G-- 753 (803)
..+. ..+.+|+.++|.|.+.+ +++.+.|+|+|..+...... ..........|.|.++ +.+|+|.|+|.|.|..+
T Consensus 105 ~~~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~~~~ 181 (196)
T 3p2t_A 105 ALPS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPV-TSVHGGTYRCFSSHGFSHY 181 (196)
T ss_dssp EESC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSC-CGGGCEEEEEEEECGGGTT
T ss_pred eCCc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCC-cccCCCeEEEEEEcCCCCc
Confidence 4443 36789999999999988 45689999999876543322 1222334568999999 79999999999999987
Q ss_pred ---ceeeeEEEEEE
Q psy2776 754 ---SATHGARVTVD 764 (803)
Q Consensus 754 ---~~~~~~~l~V~ 764 (803)
..+..+.|.|.
T Consensus 182 ~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 182 LLSHPSDPLELIVS 195 (196)
T ss_dssp EECCCCCCEEEEEC
T ss_pred ccCCCCCCEEEEeC
Confidence 34556666663
No 139
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.85 E-value=1.1e-20 Score=185.45 Aligned_cols=172 Identities=12% Similarity=0.143 Sum_probs=124.0
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCC-eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNG-AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g-~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
..+.+|+.+.|.|.+.|.|.|.+.|+++. ..+. . ..........|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l 86 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence 44568999999999999999999999843 2221 1 22233456789999999999999999999998888888888
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|..+| ..+.+.
T Consensus 87 ~V~~~p--------------------------------------------------------------------~~~~~~ 98 (202)
T 1vca_A 87 EIYSFP--------------------------------------------------------------------KDPEIH 98 (202)
T ss_dssp EEEBCC--------------------------------------------------------------------SCCEEE
T ss_pred EEEeCC--------------------------------------------------------------------CCCEeC
Confidence 887643 012222
Q ss_pred eccceeEEecCCeEEEEEEEeecCC---CceEEeeCCeeccCCCCeEE----EeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLLSSPKKRE----IFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~~~~l~~~~~~~~----~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+ ...+.+|+.++|.|.+.|.|+ +.|.|++++.+|........ .......+|.|..+ ..+|.|.|+|+|.
T Consensus 99 --~-~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~-~~d~~g~ytC~A~ 174 (202)
T 1vca_A 99 --L-SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV-IEDIGKVLVCRAK 174 (202)
T ss_dssp --E-SSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCC-GGGTTCEEEEEEE
T ss_pred --C-ceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEee-eccCCCeEEEEEE
Confidence 1 156889999999999998644 36899999998753210000 00122456778877 6788999999999
Q ss_pred ccCcce-------eeeEEEEEEe
Q psy2776 750 NELGSA-------THGARVTVDV 765 (803)
Q Consensus 750 N~~G~~-------~~~~~l~V~~ 765 (803)
|.+|.. +.++.|.|..
T Consensus 175 n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 175 LHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp ECSCCCTTSCSEEEEEEECCEEC
T ss_pred ccccCCCCcceeEeeEEEEEEec
Confidence 999873 4566666653
No 140
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.85 E-value=3.5e-21 Score=188.44 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=120.6
Q ss_pred eccccceeEEEEe----cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeee
Q psy2776 318 VPHLGDATFQVEL----SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLD 393 (803)
Q Consensus 318 ~~~g~~~~l~C~~----~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~ 393 (803)
+..|++++|.|.+ +.|.+.+.|+|+|..+..........+. +.
T Consensus 5 a~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~----~~----------------------------- 51 (203)
T 4fa8_A 5 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDV----IF----------------------------- 51 (203)
T ss_dssp EETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTE----EE-----------------------------
T ss_pred EEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCce----EE-----------------------------
Confidence 4569999999963 6899999999998655432111110000 00
Q ss_pred cCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 394 FGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
..+.......+....+...|.|.+++.+|+|.|+|.|.|..|....
T Consensus 52 ------------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~---------------------- 97 (203)
T 4fa8_A 52 ------------IEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTK---------------------- 97 (203)
T ss_dssp ------------ECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEE----------------------
T ss_pred ------------eeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEE----------------------
Confidence 0000001122334566778999999999999999999998888776
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC--
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD-- 551 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~-- 551 (803)
.+.|.|..||.+. .......+.+|+.+.|.|.+.|.|.|.++|++++..+..
T Consensus 98 --------------------~~~l~V~~p~~~~------~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~ 151 (203)
T 4fa8_A 98 --------------------QEHLSVVKPLTLS------VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT 151 (203)
T ss_dssp --------------------EEEEEEEEEEEEE------EEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--------
T ss_pred --------------------EEEEEecCCceee------ecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcc
Confidence 3445555444322 122345677899999999999999999999987654432
Q ss_pred --CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEE
Q psy2776 552 --SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 552 --~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
..++.+..++.-..|.|.++..+|+|.|+|.|+|..|.+..
T Consensus 152 ~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 152 AANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp ----CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred cccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 23334333333456777899999999999999999998764
No 141
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=183.97 Aligned_cols=196 Identities=17% Similarity=0.298 Sum_probs=136.6
Q ss_pred eeccccceeEEEEe-c-CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeec
Q psy2776 317 LVPHLGDATFQVEL-S-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDF 394 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~ 394 (803)
+.-.++.+.|.|.+ + .|.+.+.|+|+|.++..+.++.+...+
T Consensus 13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~------------------------------------ 56 (212)
T 2r15_A 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG------------------------------------ 56 (212)
T ss_dssp EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEET------------------------------------
T ss_pred EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeC------------------------------------
Confidence 33457778889988 4 568999999999998876555443332
Q ss_pred CCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccC
Q psy2776 395 GSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVK 474 (803)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~ 474 (803)
+...|.|.+++.+|+|.|+|.+.|..|...... .+.+......
T Consensus 57 --------------------------~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~---------~l~v~~~~~~-- 99 (212)
T 2r15_A 57 --------------------------EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV---------DLSGQAYDEA-- 99 (212)
T ss_dssp --------------------------TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE---------EECHHHHHHH--
T ss_pred --------------------------CEEEEEECCCCcccCEEEEEEEecCCcceEEEE---------EEEEeeccch--
Confidence 344688888999999999999999877666521 1211100000
Q ss_pred CchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc
Q psy2776 475 PPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554 (803)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~ 554 (803)
. ..++.+. ...+.....| .+.........+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+
T Consensus 100 ~---~~~~~~~--------~~~~~~~~~p-----~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~ 163 (212)
T 2r15_A 100 Y---AEFQRLK--------QAAIAEKNRA-----RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH 163 (212)
T ss_dssp H---HHHHHHH--------HHHHHHHHSC-----EEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSS
T ss_pred h---hhccccC--------cccccccCCC-----cccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCC
Confidence 0 0000000 0000000011 1122222356789999999999999999999999999999998888
Q ss_pred EEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 555 CRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 555 ~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
+.+... +....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 164 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp EEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 777665 55689999999999999999999999999999999988653
No 142
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.84 E-value=2.6e-20 Score=186.44 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=119.7
Q ss_pred ceEEeecceeEEEEEEcCcCCC---eeEEeeCCee-----------ecCC------CcEEEEe---cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP---EISWMKNGAE-----------ITDS------KACRIFI---DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~---~v~W~~~g~~-----------i~~~------~~~~~~~---~~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+.+.+ .+.|+|++.. +... .+..... ..+...|.|.+++.
T Consensus 13 pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 92 (226)
T 4f80_A 13 PILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTA 92 (226)
T ss_dssp CEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCG
T ss_pred CEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCch
Confidence 4668899999999999877654 6899987632 1110 1222221 23467999999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.|..|.....+.+.+...
T Consensus 93 ~D~G~Y~C~a~n~~~~~~~~v~~~~~~~---------------------------------------------------- 120 (226)
T 4f80_A 93 SDSGKYLCYFQDGDFYEKALVELKVAAL---------------------------------------------------- 120 (226)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEBC----------------------------------------------------
T ss_pred HHCeeEEEEEECCCcEEEEEEEEeeccc----------------------------------------------------
Confidence 9999999999998877666655554321
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEEe--eCceEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREIF--DGENIIL 730 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~~--~~~~~~L 730 (803)
+........+.+|+.+.|.|.+.| .|.|.|.|++++..+.......+.. ++....+
T Consensus 121 ---------------------~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~ 179 (226)
T 4f80_A 121 ---------------------GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVA 179 (226)
T ss_dssp ---------------------CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEE
T ss_pred ---------------------eecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEE
Confidence 111223456778999999999988 4999999999654443332222222 2334455
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.+..+ +.+|+|.|+|+|+|.+|....++.|.|.
T Consensus 180 s~l~v-~~~d~G~YtC~a~N~~g~~~~~~~v~v~ 212 (226)
T 4f80_A 180 ASVIM-RGSSGEGVSCTIRSSLLGLEKTASISIA 212 (226)
T ss_dssp EEEEE-CC----CEEEEEEETTTTEEEEEEECCC
T ss_pred EEEEe-chhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence 66677 6899999999999999999998888873
No 143
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.84 E-value=5.1e-21 Score=194.74 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=127.1
Q ss_pred ceEEeecceeEEEEEEcC---cCCCeeEEeeCCeeec------------------------------CCCcEEEEecCCe
Q psy2776 517 SQRLSVKSQWKVEVKYFG---FPRPEISWMKNGAEIT------------------------------DSKACRIFIDEET 563 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g---~p~~~v~W~~~g~~i~------------------------------~~~~~~~~~~~~~ 563 (803)
...+.+|+.+.|.|.+.+ .|.+.+.|+|++.... ...+..+.. .+.
T Consensus 11 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~ 89 (250)
T 2fbo_J 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-LAA 89 (250)
T ss_dssp EEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-TTS
T ss_pred ceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-CCc
Confidence 577899999999999988 7889999999875321 001111111 123
Q ss_pred EEEEEeeeccCcCeEEEEEEEcCCCCe-----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeE
Q psy2776 564 STIAIYSVVRADTSTYTVTATNAAGST-----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638 (803)
Q Consensus 564 ~~L~i~~v~~~dsG~Y~C~a~n~~g~~-----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (803)
..|.|.+++.+|+|.|+|.|.|..+.. +.++.|.|..++
T Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------ 133 (250)
T 2fbo_J 90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT------------------------------------ 133 (250)
T ss_dssp CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS------------------------------------
T ss_pred ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC------------------------------------
Confidence 589999999999999999999987753 567778775531
Q ss_pred EEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC
Q psy2776 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP 717 (803)
Q Consensus 639 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~ 717 (803)
.+|.+ +..+....+.+|+.+.|.|.+.|.|.|.+.|++++.++....
T Consensus 134 --------------------------------~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~ 181 (250)
T 2fbo_J 134 --------------------------------PSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYE 181 (250)
T ss_dssp --------------------------------CCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSS
T ss_pred --------------------------------CCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccc
Confidence 02222 233445778889999999999999999999999998875432
Q ss_pred Ce--EEE-------------------eeCceEEEEEecCCCCCCceeEEEEEEc---cCcceeeeEEEEE
Q psy2776 718 KK--REI-------------------FDGENIILELKEADSETDAGDYKVVATN---ELGSATHGARVTV 763 (803)
Q Consensus 718 ~~--~~~-------------------~~~~~~~L~i~~v~~~~D~G~Y~C~a~N---~~G~~~~~~~l~V 763 (803)
.. ... .......|.|.++ +.+|+|.|+|.|.| ..|.+..++.|.|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 182 TGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAA-KITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp SCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSC-CGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cCcceeEeccCCCCccccCceEecccccCCccEEEEecC-CcccCEEEEEEecCCccccCccceeEEEeC
Confidence 11 000 0001247999999 79999999999999 5556666665543
No 144
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.84 E-value=3e-20 Score=177.85 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=121.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.|.+. +.|+|+|..+.. ....|.|.+++.+|+|.|+|.|.|..+ +..+.
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~ 83 (175)
T 1fnl_A 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQ 83 (175)
T ss_dssp CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSSSCC--CCCEE
T ss_pred ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEeeCCcc--cccEE
Confidence 45789999999999999998876 789999987764 356899999999999999999998655 34455
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. +|.+
T Consensus 84 l~V~~-----------------------------------------------------------------------~~~~ 92 (175)
T 1fnl_A 84 LEVHI-----------------------------------------------------------------------GWLL 92 (175)
T ss_dssp EEEEC-----------------------------------------------------------------------SSEE
T ss_pred EEEeC-----------------------------------------------------------------------CCce
Confidence 55543 2223
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
+.. ....+.+|+.+.|.|.+.+.|++ .+.|+++|..+.. ......|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 93 ~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~--------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~~~ 162 (175)
T 1fnl_A 93 LQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY--------FHHNSDFHIPKA-TLKDSGSYFCRGLVGSKN 162 (175)
T ss_dssp EEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE--------EEECCCEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred eeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC--------CCCCCEEEEccc-ChhhCeEEEEEEEcCCCC
Confidence 222 23568899999999999988665 9999999998732 122346999999 799999999999997654
Q ss_pred -eeeeEEEEEEe
Q psy2776 755 -ATHGARVTVDV 765 (803)
Q Consensus 755 -~~~~~~l~V~~ 765 (803)
.+..+.|.|.+
T Consensus 163 ~~s~~~~l~V~~ 174 (175)
T 1fnl_A 163 VSSETVNITITQ 174 (175)
T ss_dssp EECCCEEEEEEC
T ss_pred ccCccEEEEEeC
Confidence 57777777753
No 145
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.83 E-value=4.6e-20 Score=181.94 Aligned_cols=170 Identities=16% Similarity=0.273 Sum_probs=130.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC-------------------CcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS-------------------KACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~-------------------~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+.+.|.|...+.|.+.+.|++++...... .+..+. .+..|.|.+++.+|+|
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMG 84 (208)
T ss_dssp SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGGGCE
T ss_pred cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEccccccCCe
Confidence 356889999999999888888999999875432211 111111 1247999999999999
Q ss_pred EEEEEEEcCC-CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAA-GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~-g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|+|.+.|.. +.....+.|.|..++
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~------------------------------------------------------ 110 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPV------------------------------------------------------ 110 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCC------------------------------------------------------
T ss_pred EEEEEEEcccCceeEEEEEEEeccCC------------------------------------------------------
Confidence 9999999985 556677777775532
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCC
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEAD 736 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~ 736 (803)
..|.+...... +.+|+.+.|.|.+.+.| |.+.|+++|..+..+.++.+..++ .+|.|.++
T Consensus 111 --------------~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v- 170 (208)
T 3r4d_A 111 --------------TQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPI- 170 (208)
T ss_dssp --------------CCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSC-
T ss_pred --------------CCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEecc-
Confidence 13545444333 88899999999999866 799999999999888887665544 47999999
Q ss_pred CCCCceeEEEEEEccCcce-eeeEEEEE
Q psy2776 737 SETDAGDYKVVATNELGSA-THGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 763 (803)
+.+|+|.|+|.|.|.+|.. +..+.|.|
T Consensus 171 ~~~d~G~Y~C~a~N~~g~~~s~~~~l~v 198 (208)
T 3r4d_A 171 KREDAGEYQCEISNPVSVRRSNSIKLDI 198 (208)
T ss_dssp CGGGCEEEEEEEECTTCCEECCCEEECC
T ss_pred CHHhCeEEEEEEecCCCcccCCceeeeE
Confidence 7999999999999999997 44555554
No 146
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.83 E-value=1e-20 Score=182.76 Aligned_cols=160 Identities=11% Similarity=0.087 Sum_probs=123.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC--------------CCcEEEEe---cCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD--------------SKACRIFI---DEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~--------------~~~~~~~~---~~~~~~L~i~~v~~~dsG~Y 579 (803)
.+.+.+|+++.|.|.+.+.|.+.+.|+|++..+.. ..++.... ..+...|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 46788999999999999999999999999863211 11222221 22356799999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 580 TVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 580 ~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
+|.|.|..| .+.|.|...+
T Consensus 84 ~C~~~~~~~----~~~l~V~~~~--------------------------------------------------------- 102 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFGLT--------------------------------------------------------- 102 (184)
T ss_dssp EEEETTEEE----EEEEEEEEEE---------------------------------------------------------
T ss_pred EEEEEcCCC----cEEEEEEEec---------------------------------------------------------
Confidence 999988744 4455553311
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCC
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~ 739 (803)
.+....+.+|++++|.|.+.|.|.|.+.|++++..+ .. ....|.|.++ +.+
T Consensus 103 ------------------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~--~~~~L~i~~v-~~~ 153 (184)
T 2ny1_B 103 ------------------ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------IQ--GGKTLSVSQL-ELQ 153 (184)
T ss_dssp ------------------ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE--------EE--ESSEEEESSC-CGG
T ss_pred ------------------CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc--------cc--CceEEEEecC-CcC
Confidence 112346789999999999999999999999987654 11 2347999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
|+|.|+|.|.|..|..+..+.|.|...
T Consensus 154 d~G~Y~C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 154 DSGTWTCTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCeEEEEEEEECCceEEEEEEEEEEec
Confidence 999999999999999999999998643
No 147
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.83 E-value=4.9e-21 Score=187.12 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=110.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~ 595 (803)
..+.+|+++.|.|.+.+.|. .+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 91 (196)
T 2d3v_A 14 SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLE 91 (196)
T ss_dssp SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEE
T ss_pred CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEE
Confidence 36889999999999998766 9999999987653211 01123456899999999999999999999987632 44566
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|...+ .+|.+
T Consensus 92 l~V~~~~--------------------------------------------------------------------~~p~i 103 (196)
T 2d3v_A 92 LVVTGFY--------------------------------------------------------------------NKPTL 103 (196)
T ss_dssp EEEECSS--------------------------------------------------------------------CCCEE
T ss_pred EEecCCC--------------------------------------------------------------------CCCeE
Confidence 6664411 14555
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEe-eCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIF-DGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
...+ ...+.+|++++|.|.+.|.| +.+.|+|+|..+...... .... ......|.|.++ +.+|+|.|+|.|.|..+
T Consensus 104 ~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 104 SALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPV-TPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCC-BTTBCEEEEEEEEETTE
T ss_pred EccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeec-CcccCeeEEEEEEccCC
Confidence 4433 35788999999999999999 899999999877432111 1111 123468999999 79999999999999876
Q ss_pred c
Q psy2776 754 S 754 (803)
Q Consensus 754 ~ 754 (803)
.
T Consensus 181 ~ 181 (196)
T 2d3v_A 181 L 181 (196)
T ss_dssp E
T ss_pred C
Confidence 3
No 148
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.83 E-value=6.9e-20 Score=177.69 Aligned_cols=173 Identities=19% Similarity=0.336 Sum_probs=127.5
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
+....+.+|+.+.|.|.+ +.|. .+.|++ +|..+....+..+..++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~-------------------------------- 55 (189)
T 2v44_A 9 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-------------------------------- 55 (189)
T ss_dssp CSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEET--------------------------------
T ss_pred CCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCC--------------------------------
Confidence 455667789999999999 7776 999999 78777665554443332
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
+...|.|.+++.+|+|.|+|.+.+..|.....
T Consensus 56 ------------------------------~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~------------------ 87 (189)
T 2v44_A 56 ------------------------------VRSRLTIYNANIEDAGIYRCQATDAKGQTQEA------------------ 87 (189)
T ss_dssp ------------------------------TEEEEEECSCCGGGCEEEEEEEECTTSCEEEE------------------
T ss_pred ------------------------------CeEEEEEccCCcccCeEEEEEEEeCCCCcEEE------------------
Confidence 33468888889999999999999987765331
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus 88 -----------------------~~~l~v~~~p~~~~------~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~ 138 (189)
T 2v44_A 88 -----------------------TVVLEIYQKLTFRE------VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138 (189)
T ss_dssp -----------------------EEEEEEECCCEEES------CCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CE
T ss_pred -----------------------EEEEEEecCCceee------cCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEe
Confidence 44555555553321 1234678899999999999999999999999998876
Q ss_pred C--CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 551 D--SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 551 ~--~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
. ..++.+. .+..|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 139 ~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 139 TISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp ECCCTTEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ccCCCCEEEe---cCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEE
Confidence 3 3344332 2348999999999999999999999987765555544
No 149
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.83 E-value=3.4e-21 Score=190.03 Aligned_cols=171 Identities=22% Similarity=0.341 Sum_probs=127.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec----------C--CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT----------D--SKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~----------~--~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+. . ..++.+. ...|.|.++..+|+|.|+|.|.
T Consensus 13 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~~~~~d~G~Y~C~~~ 88 (209)
T 1nbq_A 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----PTGITFKSVTREDTGTYTCMVS 88 (209)
T ss_dssp BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE----TTEEECSCCCTTSCSEEEEEEE
T ss_pred ceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee----ccEEEEeeCCHHHCcEEEEEEe
Confidence 5678899999999999999999999999876531 1 1233322 2689999999999999999999
Q ss_pred cCCCC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 585 NAAGS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 585 n~~g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|..|. .+..+.|.|..+|
T Consensus 89 ~~~g~~~~~~~~~l~V~~~p------------------------------------------------------------ 108 (209)
T 1nbq_A 89 EEGGNSYGEVKVKLIVLVPP------------------------------------------------------------ 108 (209)
T ss_dssp ETTSSCEECCEEECCEEBCC------------------------------------------------------------
T ss_pred cCCCCccceEEEEEEEecCC------------------------------------------------------------
Confidence 98664 3445556554432
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCe-------EEEeeCceEEEEEec
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKK-------REIFDGENIILELKE 734 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~-------~~~~~~~~~~L~i~~ 734 (803)
.+........+.+|+.+.|.|.+ .|.|.|.+.|++++..+..+.+. ..........|.|.+
T Consensus 109 -----------~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 177 (209)
T 1nbq_A 109 -----------SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177 (209)
T ss_dssp -----------CCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESS
T ss_pred -----------cCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEe
Confidence 22222334467889999999997 89999999999999988765432 011112345799999
Q ss_pred CCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+ +.+|+|.|+|.|.|.+|....+..+.|
T Consensus 178 ~-~~~d~G~Y~C~a~n~~g~~~~s~~v~l 205 (209)
T 1nbq_A 178 L-SASDTGEYSCEARNGYGTPMTSNAVRM 205 (209)
T ss_dssp C-CGGGCCCEEEEEECSSSCCEECCCBCC
T ss_pred c-cccCCeEEEEEEeCCcCcccccccEEE
Confidence 9 789999999999999999944444444
No 150
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.83 E-value=9.5e-21 Score=185.41 Aligned_cols=174 Identities=12% Similarity=0.051 Sum_probs=121.4
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC-C--CeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA-G--STSLDL 594 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-g--~~s~s~ 594 (803)
..+.+|++++|.|.+.+.|. .+.|+|+|..+....+.. ........|.|.++..+|+|.|+|.|.|.. | ..+..+
T Consensus 14 ~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~ 91 (198)
T 1ugn_A 14 SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPL 91 (198)
T ss_dssp SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCE
T ss_pred CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccE
Confidence 46789999999999998876 799999998774221100 012235689999999999999999999987 4 345667
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|...+ .+|.
T Consensus 92 ~l~V~~~~--------------------------------------------------------------------~~p~ 103 (198)
T 1ugn_A 92 ELVVTGAY--------------------------------------------------------------------IKPT 103 (198)
T ss_dssp EEEEECSS--------------------------------------------------------------------CCCE
T ss_pred EEEEcccc--------------------------------------------------------------------cCCc
Confidence 77775421 1344
Q ss_pred eEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCe-EEEe-eCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKK-REIF-DGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~-~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
+...+ ...+.+|++++|.|.+.|. .+.+.|+|+|..+...... .... .+....|.|.++ +.+|+|.|+|.|.|..
T Consensus 104 i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~ 180 (198)
T 1ugn_A 104 LSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPV-SPSRRWWYRCYAYDSN 180 (198)
T ss_dssp EEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCC-CTTSCEEEEEEEECTT
T ss_pred cccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEeccc-CcccCeEEEEEEEeCC
Confidence 44332 3678899999999999988 7899999999887543221 1111 223578999999 7999999999999987
Q ss_pred cc-----eeeeEEEEEE
Q psy2776 753 GS-----ATHGARVTVD 764 (803)
Q Consensus 753 G~-----~~~~~~l~V~ 764 (803)
+. .+..+.|.|.
T Consensus 181 ~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 181 SPYEWSLPSDLLELLVL 197 (198)
T ss_dssp STTEECCCCCCEEEEEE
T ss_pred CCccccCcCceEEEEec
Confidence 62 2556666664
No 151
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.83 E-value=2e-19 Score=179.25 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=124.2
Q ss_pred ceEEeecceeEEEEEEcCcCC-----CeeEEeeCCeeec---------C------CCcEEEEe---cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-----PEISWMKNGAEIT---------D------SKACRIFI---DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-----~~v~W~~~g~~i~---------~------~~~~~~~~---~~~~~~L~i~~v~~ 573 (803)
...+.+|+.+.|.|.+.+.|. +.+.|+|++..+. . ..+..+.. ..+...|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~ 89 (222)
T 3sbw_C 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKL 89 (222)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCG
T ss_pred cEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccc
Confidence 467889999999999988774 4899999763321 1 12222221 12457899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.| .|.....+.|.|..++
T Consensus 90 ~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~--------------------------------------------------- 117 (222)
T 3sbw_C 90 QDAGVYRCMISY-GGADYKRITVKVNAPY--------------------------------------------------- 117 (222)
T ss_dssp GGCEEEEEEEES-SSEEEEEEEEEEEBCC---------------------------------------------------
T ss_pred ccCeEEEEEEEe-CCCceeEEEEEEECCC---------------------------------------------------
Confidence 999999999999 6777778888886532
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC-CeeccCCCCeEEEe--eCceEEE
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN-NKPLLSSPKKREIF--DGENIIL 730 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-~~~l~~~~~~~~~~--~~~~~~L 730 (803)
..|.. .....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+..... ++.....
T Consensus 118 -----------------~~~~~---~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~ 177 (222)
T 3sbw_C 118 -----------------NKINQ---RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVT 177 (222)
T ss_dssp -----------------CCCEE---EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEE
T ss_pred -----------------CCCCc---eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEE
Confidence 01111 1113567899999999999999999999998 66654433221211 2222233
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+..+ ..+|+|.|+|.|.|.+|.....+.|.|..
T Consensus 178 ~~l~v-~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 178 STLRI-NTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp EEEEE-ECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEE-eccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 33344 46899999999999999999999999863
No 152
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.82 E-value=2.9e-20 Score=184.58 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=124.2
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeE--EEEEeeeccCcCeEEEEEEEcCCCCe--EEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETS--TIAIYSVVRADTSTYTVTATNAAGST--SLD 593 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~--~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s 593 (803)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ......... .|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~ 95 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDT 95 (218)
T ss_dssp SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCC
T ss_pred CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCC
Confidence 46889999999999987 6789999999876643221 111112234 89999999999999999999987633 334
Q ss_pred EEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCC
Q psy2776 594 LSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAP 673 (803)
Q Consensus 594 ~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p 673 (803)
+.|.|... ..+|
T Consensus 96 ~~l~V~~~--------------------------------------------------------------------~~~P 107 (218)
T 1uct_A 96 LELVVTGL--------------------------------------------------------------------YGKP 107 (218)
T ss_dssp EEEEEECS--------------------------------------------------------------------SCCC
T ss_pred EEEEEcCc--------------------------------------------------------------------ccCC
Confidence 55555431 1145
Q ss_pred eeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 674 LFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 674 ~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
.+...+ ...+.+|++++|.|.+.+.|.+.+.|+|+|..+... . ........|.|.++ +.+|+|.|+|.|.|..+
T Consensus 108 ~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--~--~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~ 181 (218)
T 1uct_A 108 FLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPV-DLNVSGIYRCYGWYNRS 181 (218)
T ss_dssp EEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSC-CGGGCEEEEEEEECTTS
T ss_pred EEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--c--cCCCccCEEEEccC-CcccCEEEEEEEEcCCC
Confidence 554444 457889999999997777888999999999877542 1 22345568999999 79999999999998642
Q ss_pred -----ceeeeEEEEEEe
Q psy2776 754 -----SATHGARVTVDV 765 (803)
Q Consensus 754 -----~~~~~~~l~V~~ 765 (803)
..+..+.|.|.+
T Consensus 182 ~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 182 PYLWSFPSNALELVVTD 198 (218)
T ss_dssp TTEECCCCCCEEEEEC-
T ss_pred CCcCCCCCCcEEEEEec
Confidence 335667777754
No 153
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=183.03 Aligned_cols=188 Identities=26% Similarity=0.406 Sum_probs=136.3
Q ss_pred CCCeeecc----CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce----eEEEecCeeEEEEecCCCCcceEEEE
Q psy2776 143 EAPVIQEP----LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR----NITYENNVARFTVVNCSESSEGRYTC 214 (803)
Q Consensus 143 ~~p~i~~~----~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C 214 (803)
.+|.|..+ +....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ..........|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 45555543 34578899999999999999999999999999887632 23445566789999999999999999
Q ss_pred EEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 215 KATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 215 ~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
.+.|..|....++.|.|...+.
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~---------------------------------------------------------- 111 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSP---------------------------------------------------------- 111 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred EEeecCCceEEEEEEEEeccCC----------------------------------------------------------
Confidence 9999999888888888866421
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEee----cCeeccccceeEEEEcCceeEEEEeecC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLK----KGKEIKESARHIITSRGTQRKLVIKRVT 369 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~----~g~~l~~~~~~~~~~~~~~~~l~i~~~~ 369 (803)
..+.+....+....+.+|+.+.|.|.+ +.|.+.+.|++ +|..+..+..........
T Consensus 112 ---------~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~---------- 172 (241)
T 3grw_A 112 ---------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKS---------- 172 (241)
T ss_dssp ---------CCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEE----------
T ss_pred ---------CCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeE----------
Confidence 111122223344556679999999999 89999999999 777775433221110000
Q ss_pred CCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceee
Q psy2776 370 QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449 (803)
Q Consensus 370 ~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~ 449 (803)
...........|.|.++..+|+|.|+|.|.|..|..
T Consensus 173 --------------------------------------------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~ 208 (241)
T 3grw_A 173 --------------------------------------------WISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208 (241)
T ss_dssp --------------------------------------------EECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred --------------------------------------------eeeeecCCceEEEECcCCcccCcEEEEEEecCcceE
Confidence 000001234569999999999999999999999988
Q ss_pred ee
Q psy2776 450 ET 451 (803)
Q Consensus 450 ~~ 451 (803)
..
T Consensus 209 ~~ 210 (241)
T 3grw_A 209 EK 210 (241)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 154
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=182.58 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=128.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCe---eEEeeCCeeecCCC------------------cEEEE---ecCCeEEEEEeeec
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE---ISWMKNGAEITDSK------------------ACRIF---IDEETSTIAIYSVV 572 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~---v~W~~~g~~i~~~~------------------~~~~~---~~~~~~~L~i~~v~ 572 (803)
.+.+.+|+++.|.|.+.+.|.+. +.|+|++..+.... +.... ......+|.|.+++
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 87 (218)
T 4frw_A 8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV 87 (218)
T ss_dssp EEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCC
T ss_pred eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeecc
Confidence 57789999999999999988764 88999875443211 11100 01123579999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 573 RADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
.+|+|.|.|.+.|..+.........+...+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 117 (218)
T 4frw_A 88 QADEGEYECRVSTFPAGSFQARLRLRVLVP-------------------------------------------------- 117 (218)
T ss_dssp GGGCEEEEEEEEEETTEEEEEEEEEEEEBC--------------------------------------------------
T ss_pred HHHCCceeEEEEeccCceeeeEEEEEEeee--------------------------------------------------
Confidence 999999999999876654433332222211
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEE
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILE 731 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~ 731 (803)
++..........+..|+.+.|.|.+.|.|+|.+.|++++..+........... ...+.|.
T Consensus 118 -------------------~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~ 178 (218)
T 4frw_A 118 -------------------PLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFH 178 (218)
T ss_dssp -------------------CCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEE
T ss_pred -------------------ccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEE
Confidence 22233344456677899999999999999999999999887754432211111 1245799
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEee
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVE 766 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 766 (803)
|.++ ..+|+|.|+|+|+|.+|..+..+.|.|.|-
T Consensus 179 i~~~-~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~ 212 (218)
T 4frw_A 179 LVPS-RSMNGQPLTCVVSHPGLLQDQRITHILHVS 212 (218)
T ss_dssp ECCC-GGGTTCEEEEEEECTTCSSCEEEEEECCEE
T ss_pred EeeC-CHHhCeEEEEEEEeCCCCeEEEEEEEEEEC
Confidence 9999 789999999999999999998888888764
No 155
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.82 E-value=2.4e-19 Score=172.73 Aligned_cols=171 Identities=16% Similarity=0.327 Sum_probs=130.1
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.|....+.+|+.+.|.|.+ +.|.+.+.|+|++..+.......+...+.
T Consensus 8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~------------------------------- 56 (182)
T 1rhf_A 8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ------------------------------- 56 (182)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT-------------------------------
T ss_pred CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCC-------------------------------
Confidence 3455667789999999999 88999999999999887654433322211
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 57 -----------------------------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~------------------ 89 (182)
T 1rhf_A 57 -----------------------------HWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ------------------ 89 (182)
T ss_dssp -----------------------------EEEEEEEESSCCGGGCEEEEEEESSCTTCEECC------------------
T ss_pred -----------------------------CceEEEEEeecCcccCeEEEEEEEcCCCcEEEE------------------
Confidence 113468899999999999999999986544331
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-eeEEeeCCeee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEI 549 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i 549 (803)
.+.|.|..+|.+.. ......+.+|+.+.|.|.+.|.|.| .+.|+++|..+
T Consensus 90 -----------------------~~~l~V~~~p~~~~------~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 140 (182)
T 1rhf_A 90 -----------------------PVWLTVEGVPFFTV------EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI 140 (182)
T ss_dssp -----------------------CEEEEEECSCEEEE------CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEEC
T ss_pred -----------------------EEEEEEecCCeEEe------cCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeEC
Confidence 45556666654211 1234678899999999999999999 99999999988
Q ss_pred cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE-EEEEEEE
Q psy2776 550 TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS-LDLSLQV 598 (803)
Q Consensus 550 ~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s-~s~~l~V 598 (803)
..... ....|.|.++ +|+|.|+|.|.|..|... .++.|.|
T Consensus 141 ~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 141 GGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp SCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 65421 4688999998 589999999999999874 4777776
No 156
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.82 E-value=4.5e-20 Score=176.86 Aligned_cols=156 Identities=16% Similarity=0.194 Sum_probs=119.4
Q ss_pred ceEEeecceeEEEEEEcCcCCC-eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP-EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.|.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.|.|..+.. .+.
T Consensus 13 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~--~~~ 80 (176)
T 1f2q_A 13 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------TNSSLNIVNAKFEDSGEYKCQHQQVNESE--PVY 80 (176)
T ss_dssp CSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------CSSEEEECSCCGGGCEEEEEECTTSSCCC--CEE
T ss_pred CcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------CceEEEEeccceecCEEEEEEcCCccccc--cEE
Confidence 4578999999999999998885 6999999988764 25689999999999999999999876544 445
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. ++.+
T Consensus 81 l~V~~-----------------------------------------------------------------------~~~~ 89 (176)
T 1f2q_A 81 LEVFS-----------------------------------------------------------------------DWLL 89 (176)
T ss_dssp EEEEC-----------------------------------------------------------------------SSEE
T ss_pred EEEeC-----------------------------------------------------------------------ccee
Confidence 55532 2222
Q ss_pred EeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC-c
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL-G 753 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~-G 753 (803)
+.. ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+.... ....|.|.++ +.+|+|.|+|.|.|.. +
T Consensus 90 ~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v-~~~d~G~Y~C~a~n~~~~ 159 (176)
T 1f2q_A 90 LQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNA-TVEDSGTYYCTGKVWQLD 159 (176)
T ss_dssp EEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred ecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------CCCeEEECCC-CcccCEEEEEEEEeCCcc
Confidence 222 235678999999999994 66778999999999884332 2347999999 7899999999999964 4
Q ss_pred ceeeeEEEEEEe
Q psy2776 754 SATHGARVTVDV 765 (803)
Q Consensus 754 ~~~~~~~l~V~~ 765 (803)
..+..+.|.|..
T Consensus 160 ~~s~~~~l~V~~ 171 (176)
T 1f2q_A 160 YESEPLNITVIK 171 (176)
T ss_dssp EECCCEEEEEEC
T ss_pred eEecCEEEEEec
Confidence 456667888753
No 157
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.82 E-value=3.5e-20 Score=177.40 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=117.7
Q ss_pred ceEEeecceeEEEEEEcC--cCCCeeEEeeCCeeec----------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFG--FPRPEISWMKNGAEIT----------DSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g--~p~~~v~W~~~g~~i~----------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
.+.+.+|+.+.|.|...+ .|.+.+.|+|++..|. ...++.+. .+ +.|.|.++..+|+|.|+|.|.
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~--~~-gsL~I~~v~~~D~G~Y~C~~~ 81 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL--AN-GDLKIKNLTRDDSGTYNVTVY 81 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--TT-SCEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC--CC-CcEEEcccccccCEEEEEEEE
Confidence 466789999999995333 4567899999997553 23444442 22 349999999999999999999
Q ss_pred cCCCCe--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 585 NAAGST--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 585 n~~g~~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
|..|.. +..+.|.|..++
T Consensus 82 n~~g~~~~~~~~~l~V~~~~------------------------------------------------------------ 101 (176)
T 1hng_A 82 STNGTRILNKALDLRILEMV------------------------------------------------------------ 101 (176)
T ss_dssp ETTCCEEEEEEEEEEEECCC------------------------------------------------------------
T ss_pred eCCCCEEEEEEEEEEEeCCC------------------------------------------------------------
Confidence 999986 666777775422
Q ss_pred cccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCce
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAG 742 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G 742 (803)
..|.+.. .+..+.|.|.+.|.|.|.+.|+++|.++..+.+ +.|..+ ..+|+|
T Consensus 102 --------~~p~i~~--------~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~-~~~d~G 153 (176)
T 1hng_A 102 --------SKPMIYW--------ECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQ-WTNLRA 153 (176)
T ss_dssp --------CCCEEEE--------ETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEE-CSCCSS
T ss_pred --------CCCEEEe--------cCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEE-EccCCe
Confidence 1333321 245699999999999999999999998754433 334466 689999
Q ss_pred eEEEEEEccCcceeeeEEEEE
Q psy2776 743 DYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.|+|.|.|.+|..+..+.|.+
T Consensus 154 ~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 154 PFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp CEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEEecCCCceecccccC
Confidence 999999999999988876654
No 158
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.82 E-value=9.4e-20 Score=182.77 Aligned_cols=187 Identities=21% Similarity=0.369 Sum_probs=136.4
Q ss_pred CCCeeeccC----cCeeeecCCcEEEEEEECccCCCeeEEEEcCeecccee----EEEecCeeEEEEecCCCCcceEEEE
Q psy2776 143 EAPVIQEPL----KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTC 214 (803)
Q Consensus 143 ~~p~i~~~~----~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C 214 (803)
.+|.|...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .........|.|.+++.+|+|.|+|
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 93 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence 455665544 67789999999999999999999999999998876421 2445556789999999999999999
Q ss_pred EEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccccccee
Q psy2776 215 KATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAW 294 (803)
Q Consensus 215 ~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (803)
.+.|..|....++.|.|...+.
T Consensus 94 ~~~n~~~~~~~~~~l~V~~~~~---------------------------------------------------------- 115 (231)
T 3ojm_B 94 VVENEYGSINHTYHLDVVERSR---------------------------------------------------------- 115 (231)
T ss_dssp EEEETTEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred EEecccCcccccEEEEEEcCCC----------------------------------------------------------
Confidence 9999999888888888876521
Q ss_pred eeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEee----cCeeccccceeEEEEcCceeEEEEeecC
Q psy2776 295 FWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLK----KGKEIKESARHIITSRGTQRKLVIKRVT 369 (803)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~----~g~~l~~~~~~~~~~~~~~~~l~i~~~~ 369 (803)
..+.+....+....+..|+.+.|.|.+ +.|.+.+.|++ +|..+..+........ ....
T Consensus 116 ---------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~------~~~~-- 178 (231)
T 3ojm_B 116 ---------HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL------KHSG-- 178 (231)
T ss_dssp ---------CCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEE------EECS--
T ss_pred ---------CCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEe------cccc--
Confidence 111222223445556779999999999 89999999999 7766654322111000 0000
Q ss_pred CCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceee
Q psy2776 370 QDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTA 449 (803)
Q Consensus 370 ~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~ 449 (803)
........|.|.++..+|+|.|+|.|.|..|..
T Consensus 179 -----------------------------------------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 211 (231)
T 3ojm_B 179 -----------------------------------------------INSSNAEVLALFNVTEADAGEYICKVSNYIGQA 211 (231)
T ss_dssp -----------------------------------------------TTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred -----------------------------------------------cccCCccEEEEecCCHHHCeEEEEEEEeccceE
Confidence 001123459999999999999999999999988
Q ss_pred ee
Q psy2776 450 ET 451 (803)
Q Consensus 450 ~~ 451 (803)
..
T Consensus 212 ~~ 213 (231)
T 3ojm_B 212 NQ 213 (231)
T ss_dssp EE
T ss_pred ee
Confidence 66
No 159
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.82 E-value=2.5e-20 Score=180.32 Aligned_cols=167 Identities=12% Similarity=0.160 Sum_probs=114.3
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEee-eccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYS-VVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~-v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
....+|+.+.|.|.+.+ |+ .+.|+|+|..+..+ .+.+|.|.+ +..+|+|.|+|.|.|..|..+..+.+
T Consensus 9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 34577999999999987 44 49999999988764 234799999 99999999999999999987666666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|....... ... ........... +...|...
T Consensus 78 ~v~~~~~~~-------------------------------------------~~~-~~~~~~~~~~~-----~~~~~~~~ 108 (186)
T 1jbj_A 78 RVGSADDAK-------------------------------------------KDA-AKKDDAKKDDA-----KKDGSQTN 108 (186)
T ss_dssp CCCSCCCCC-------------------------------------------CCC-CCCCCCSCCSS-----STTCCSCC
T ss_pred EEecccccc-------------------------------------------ccc-ccccccccCCc-----cccccccc
Confidence 654321000 000 00000000000 00000000
Q ss_pred ecc---ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 677 ERF---EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 677 ~~~---~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
... ....+.+|+++.|.|.+ |.|.+.|+|+|.++..... ....|.|.++ +.+|+|.|+|.|.|.+|
T Consensus 109 ~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v-~~~D~G~Y~C~a~N~~g 177 (186)
T 1jbj_A 109 KAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNN-AKDPRGTYQCQGAKETS 177 (186)
T ss_dssp CCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEET-TSCCEEEEEEEESSCEE
T ss_pred cccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCC-CcCcCEEEEEEEEcCcC
Confidence 000 01235589999999988 8899999999999864432 3346999999 79999999999999999
Q ss_pred ce
Q psy2776 754 SA 755 (803)
Q Consensus 754 ~~ 755 (803)
+.
T Consensus 178 ~~ 179 (186)
T 1jbj_A 178 NP 179 (186)
T ss_dssp EE
T ss_pred Cc
Confidence 87
No 160
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=179.02 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=115.5
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC--eEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~--~s~s~~ 595 (803)
..+.+|+++.|.|.+.+ |.+.+.|+|+|... ......|.|.+++.+|+|.|+|.|.|..|. .+..+.
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~ 85 (184)
T 2gi7_A 17 SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLE 85 (184)
T ss_dssp SEEETTCCEEEEEECST-TCSEEEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEE
T ss_pred ccccCCCcEEEEEeCCC-CCCEEEEEECCccc----------cCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEE
Confidence 36889999999999988 78899999998651 123568999999999999999999998753 344556
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.... .+|.+
T Consensus 86 l~V~~~~--------------------------------------------------------------------~~p~i 97 (184)
T 2gi7_A 86 LVATGVF--------------------------------------------------------------------AKPSL 97 (184)
T ss_dssp EEEESSS--------------------------------------------------------------------CCCEE
T ss_pred EEecCcC--------------------------------------------------------------------CCCEE
Confidence 6663311 14555
Q ss_pred EeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+..... .......|.|.++ +.+|+|.|+|.|.|..+.
T Consensus 98 ~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~----~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 98 SAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP----ERWYRASFPIITV-TAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp EEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC----CEEEEESSSEEEE-TTCCSEEEEEEEECTTST
T ss_pred EeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec----CCCceEEEEEccC-CccCCeEEEEEEEeCCCC
Confidence 5444 45678999999999987654 69999999988765322 1233456999999 799999999999998653
No 161
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=174.15 Aligned_cols=174 Identities=22% Similarity=0.388 Sum_probs=125.2
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc---eeEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG---RNITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.... ...|.|.+++.+|+|.|+|.+.|..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec-CCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 56777778889999999999999999999999999999877652 2333322 3469999999999999999999987
Q ss_pred cCeee--EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 221 GTAET--SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 221 g~~~~--s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
+.... ...+.|..+|...
T Consensus 81 ~~~~~~~~~~l~v~~~p~~~------------------------------------------------------------ 100 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNVPPAIS------------------------------------------------------------ 100 (189)
T ss_dssp TTEEEEEEEEEEEEEEEEEE------------------------------------------------------------
T ss_pred CCceEEEEEEEEecCCCCcc------------------------------------------------------------
Confidence 65443 3445444432100
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEE
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIG 377 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 377 (803)
....+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.......+..
T Consensus 101 ----------~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--------------------- 149 (189)
T 2v5t_A 101 ----------MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--------------------- 149 (189)
T ss_dssp ----------CSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET---------------------
T ss_pred ----------cccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec---------------------
Confidence 0000112345679999999999 88999999999999887654433321
Q ss_pred EEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 378 VLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 378 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
+...|+|.++..+|+|.|+|.|.|..|....+
T Consensus 150 -------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 181 (189)
T 2v5t_A 150 -------------------------------------------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181 (189)
T ss_dssp -------------------------------------------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred -------------------------------------------CCCEEEEcCCChhhCeeEEEEEEeCCCceeEE
Confidence 22358888899999999999999999887763
No 162
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.81 E-value=1.4e-19 Score=179.16 Aligned_cols=176 Identities=11% Similarity=0.123 Sum_probs=128.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|. +.... ...++.+........|.|.++..+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 46788999999999999999999999983 22110 22455555566678999999999999999999
Q ss_pred EEcCCC---CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 583 ATNAAG---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 583 a~n~~g---~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
|.|..| .....+.|.|...+
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------------- 111 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQP--------------------------------------------------------- 111 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSC---------------------------------------------------------
T ss_pred eccCCcceeEEcCceEEEEeCCC---------------------------------------------------------
Confidence 999987 33445566664311
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCe--EEEeeCc---eEEEEE
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKK--REIFDGE---NIILEL 732 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~--~~~~~~~---~~~L~i 732 (803)
..+|.+...+....+.+|+.++|.|.+.|. |+ +.+.|+++|.++..+... ....++. ...|.|
T Consensus 112 ----------~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i 181 (213)
T 3mj8_L 112 ----------NAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTM 181 (213)
T ss_dssp ----------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEE
T ss_pred ----------CCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEE
Confidence 126666666555555689999999999986 44 389999999998653111 0111111 245899
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
.++ ..+|+|.|+|.|.|..|....++.
T Consensus 182 ~~~-~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 182 TAD-AWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp ESH-HHHSCSCEEEEEEETTEEEEEEEC
T ss_pred eHH-HcCCCCEEEEEEEECCccEEeeec
Confidence 999 689999999999999987766553
No 163
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.81 E-value=2.4e-19 Score=173.80 Aligned_cols=169 Identities=9% Similarity=0.040 Sum_probs=122.6
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC--eEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLSL 596 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~--~s~s~~l 596 (803)
.+.+|++++|.|.+.+ +++.+.|+|+|..+..... .......+..|.|.+++.+|+|.|+|.|.|..+. .+..+.|
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l 91 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 91 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEE
Confidence 6889999999999876 4578999999987652100 0011235678999999999999999999986542 3455666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|.... .+|.+.
T Consensus 92 ~V~~~~--------------------------------------------------------------------~~p~i~ 103 (188)
T 1oll_A 92 VVTEMY--------------------------------------------------------------------DTPTLS 103 (188)
T ss_dssp EEESCS--------------------------------------------------------------------CCCEEE
T ss_pred EecccC--------------------------------------------------------------------CCCeEE
Confidence 664311 145555
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc---
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG--- 753 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G--- 753 (803)
..+ ...+.+|+.++|.|.+.+ +.+.+.|+|+|..+.. ..........|.|.++ +.+|+|.|+|.|.|...
T Consensus 104 ~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~s 176 (188)
T 1oll_A 104 VHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPV-TTAHRGTYRCFGSYNNHAWS 176 (188)
T ss_dssp EES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEEC-CGGGCEEEEEECEEETTEEC
T ss_pred ECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----cccCCCceeEEEECCC-CcCCCcEEEEEEEcCCCcCC
Confidence 444 456889999999999875 5578999999877643 1223355678999999 79999999999999752
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
..+..+.|.|.
T Consensus 177 ~~S~~~~l~V~ 187 (188)
T 1oll_A 177 FPSEPVKLLVT 187 (188)
T ss_dssp CCCCCEEEEEE
T ss_pred CCCCcEEEEec
Confidence 33556666664
No 164
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.81 E-value=3.5e-19 Score=169.47 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=118.9
Q ss_pred ceEEeecceeEEEEEEcCcC-CCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-RPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.+.| .+.+.|+|+|..+... ...+.|.+++.+|+|.|+|.|.|..+.. .+.
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~--~~~ 80 (170)
T 3ry4_A 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTSLSD--PVH 80 (170)
T ss_dssp CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEEETTSBCCC--CEE
T ss_pred CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC----------ccceEEEecccccCeEEEEEEeCCCceE--eEE
Confidence 45688999999999999987 5799999999988764 2346678999999999999999865443 455
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|.. +|.+
T Consensus 81 l~v~~-----------------------------------------------------------------------~~~~ 89 (170)
T 3ry4_A 81 LTVLF-----------------------------------------------------------------------EWLV 89 (170)
T ss_dssp EEEEC-----------------------------------------------------------------------CSEE
T ss_pred EEEEC-----------------------------------------------------------------------CceE
Confidence 55544 2222
Q ss_pred EeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc
Q psy2776 676 IERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS 754 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~ 754 (803)
.. .....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ......|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 90 ~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~--------~~~~~~L~i~~v-~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 90 LQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF--------SHLDPTFSIPQA-NHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp EE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE--------ESSCCEEEESSC-CGGGCEEEEEEEEETTEE
T ss_pred ec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc--------cCCCCeEEEEec-cccCCEEEEEEEEeCcCc
Confidence 22 224567889999999999 4557789999999988642 123447999999 789999999999999997
Q ss_pred -eeeeEEEEE
Q psy2776 755 -ATHGARVTV 763 (803)
Q Consensus 755 -~~~~~~l~V 763 (803)
.+..+.|.|
T Consensus 160 ~~s~~~~l~V 169 (170)
T 3ry4_A 160 FSSKPVTITV 169 (170)
T ss_dssp EECCCEEEEE
T ss_pred cccccEEEEE
Confidence 466666665
No 165
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.81 E-value=3.9e-19 Score=176.12 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=121.2
Q ss_pred CCceeeeccc--cceeEEEEecCCceeeEEeec---CeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccc
Q psy2776 312 LPSVTLVPHL--GDATFQVELSSPDIQVKWLKK---GKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 312 ~~~~~~~~~g--~~~~l~C~~~~p~~~i~W~~~---g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
.|....+.+| +++.|.|.+..|.+.+.|+++ |..+..+......
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~~~~~~~~------------------------------- 61 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD------------------------------- 61 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCCSSSCEEE-------------------------------
T ss_pred CceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccCCCccccc-------------------------------
Confidence 3467778889 999999999668899999884 6655543222111
Q ss_pred eeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEee
Q psy2776 387 SKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSL 466 (803)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~ 466 (803)
....|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 62 ----------------------------------~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~-------------- 93 (213)
T 2x1w_L 62 ----------------------------------SKKGFTIPSYMISYAGMVFCEAKINDESYQSI-------------- 93 (213)
T ss_dssp ----------------------------------TTTEEEEEGGGTTTCSEEEEEEC----CEECC--------------
T ss_pred ----------------------------------CCccEEEccCChhcCceEEEEEEECCeeEEEE--------------
Confidence 11248899999999999999999854332221
Q ss_pred eccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEee
Q psy2776 467 RKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMK 544 (803)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~ 544 (803)
.+.|.|.. +..+. +...+.....+.+|++++|.|.+.|.|. +.+.|++
T Consensus 94 ---------------------------~~~l~v~~-~~~p~--~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~ 143 (213)
T 2x1w_L 94 ---------------------------MYIVVVVG-YRIYD--VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143 (213)
T ss_dssp ---------------------------CEEEEECB-CCEEE--EEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC
T ss_pred ---------------------------EEEEEEeC-Ccccc--eEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe
Confidence 12333321 11111 1111222347899999999999998654 5799999
Q ss_pred CCeeecCCCc-EEEEe-------cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 545 NGAEITDSKA-CRIFI-------DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 545 ~g~~i~~~~~-~~~~~-------~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+|..+..... ..... ....++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp SCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred cCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 9876533211 00000 1124689999999999999999999999999999999998866
No 166
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.81 E-value=2.2e-19 Score=174.39 Aligned_cols=177 Identities=19% Similarity=0.288 Sum_probs=126.3
Q ss_pred CceeeeccccceeEEEEe-cCC-ceeeEEee-cCeecccc-ceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSP-DIQVKWLK-KGKEIKES-ARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~-~g~~l~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
|....+.+|+.+.|.|.+ +.| .+.+.|++ +|..+... .++.+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~-------------------------------- 56 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-------------------------------- 56 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEE--------------------------------
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEE--------------------------------
Confidence 344556779999999999 655 89999999 88777632 2222111
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
...+...|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 57 -----------------------------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~---------------- 91 (191)
T 1epf_A 57 -----------------------------NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA---------------- 91 (191)
T ss_dssp -----------------------------EETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE----------------
T ss_pred -----------------------------CCCCceEEEEccCCcccCEEEEEEEEcCCCcceEE----------------
Confidence 12345679999999999999999999987432221
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
.+.|.+..+|.+.. ......+.+|+.+.|.|.+.|.|.+.+.|+++|..
T Consensus 92 -------------------------~~~l~v~~~p~~~~------~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~ 140 (191)
T 1epf_A 92 -------------------------TVNVKIFQKLMFKN------APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140 (191)
T ss_dssp -------------------------EEEEEEECCSEEEE------CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEE
T ss_pred -------------------------EEEEEeecCceEec------CCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEE
Confidence 34445555543211 11346678899999999999999999999999998
Q ss_pred ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 549 ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 549 i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
+......++.... +..|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 141 ~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 141 VILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp GGGGCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred eeccCCceEEEec-CCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 8654322222222 347999999999999999999999876666555554
No 167
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.81 E-value=1.6e-19 Score=178.50 Aligned_cols=189 Identities=19% Similarity=0.333 Sum_probs=131.9
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.+....+.+|+.+.|.|.+ +.|.+.+.|++++..+..- ....+. ..
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~--------~~--------------------- 53 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTAL----VCYNSQ--------IT--------------------- 53 (212)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEE----EEETTE--------EC---------------------
T ss_pred cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeE----EecCCc--------cc---------------------
Confidence 3455667789999999999 7799999999987653210 000000 00
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.....++...+ ..|.|.+++.+|+|.|+|.+.+..|....+.
T Consensus 54 -------------------~~~~~r~~~~~--~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~----------------- 95 (212)
T 1f97_A 54 -------------------APYADRVTFSS--SGITFSSVTRKDNGEYTCMVSEEGGQNYGEV----------------- 95 (212)
T ss_dssp -------------------GGGTTTEEEET--TEEEESCCCGGGCEEEEEEEEETTSSSEEEE-----------------
T ss_pred -------------------ccccCcEEeec--eeEEEcccCcccCeEEEEEEEccCCCcccEE-----------------
Confidence 00001112222 5699999999999999999999876322211
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEE-EcCcCCCeeEEeeCCe-e
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVK-YFGFPRPEISWMKNGA-E 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~-~~g~p~~~v~W~~~g~-~ 548 (803)
.+.|.|..+|..+.... ...+.+|+.+.|.|. +.|.|.+.+.|++++. .
T Consensus 96 -----------------------~~~l~V~~~p~~~~~~~------~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~ 146 (212)
T 1f97_A 96 -----------------------SIHLTVLVPPSKPTISV------PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM 146 (212)
T ss_dssp -----------------------EEEEEEEBCCCCCEEEC------CSEEETTSCEEEEEECSCCBSCCEEEEEETTEES
T ss_pred -----------------------EEEEEEEcCCCCcccCC------ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccc
Confidence 56667777776654431 356889999999999 7999999999999999 8
Q ss_pred ecCCCc-------EEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe--EEEEEEEEee
Q psy2776 549 ITDSKA-------CRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST--SLDLSLQVLG 600 (803)
Q Consensus 549 i~~~~~-------~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~--s~s~~l~V~~ 600 (803)
+..... ...........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 147 LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp BC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 775432 122333456789999999999999999999999998 5566666654
No 168
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.81 E-value=2.3e-19 Score=180.11 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=130.7
Q ss_pred ceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeec---------CCC--cEEEE----------ecCCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEIT---------DSK--ACRIF----------IDEETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~---------~~~--~~~~~----------~~~~~~~L~i~~v~~~ 574 (803)
...+.+|+.+.|.|.+.+.|. +.+.|++++.... ... ..++. ...+ +.|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~L~i~~v~~~ 87 (231)
T 2pet_A 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-GRLVLAEAQVG 87 (231)
T ss_dssp EEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-CCEEESSCCGG
T ss_pred cEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-ceEEEcccCcc
Confidence 577899999999999999985 8999998654311 111 11221 2222 34999999999
Q ss_pred cCeEEEEEEEcCC-CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 575 DTSTYTVTATNAA-GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 575 dsG~Y~C~a~n~~-g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
|+|.|+|.|.|.. +..+..+.|.|..+|
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p--------------------------------------------------- 116 (231)
T 2pet_A 88 DERDYVCVVRAGAAGTAEATARLNVFAKP--------------------------------------------------- 116 (231)
T ss_dssp GCEEEEEEEECGGGCEEEEEEEEEEEBCC---------------------------------------------------
T ss_pred cCceEEEEEEecCCCceEEEEEEEEEecC---------------------------------------------------
Confidence 9999999999997 788888888887643
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeE-EEEEEE-eecCCCceEEeeCCeeccCCC----CeEEEeeCc-
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI-RLMAKV-KASPAPSIVWFRNNKPLLSSP----KKREIFDGE- 726 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v-~L~C~~-~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~- 726 (803)
..|.+...+....+.+|+.+ .|.|.+ .|.|.|.+.|+++|.++.... ++.+.....
T Consensus 117 -----------------~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (231)
T 2pet_A 117 -----------------EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVR 179 (231)
T ss_dssp -----------------CCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEE
T ss_pred -----------------CCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEe
Confidence 14556655556667789988 999999 899999999999999987665 444443211
Q ss_pred --------eEEEEEecCCCCCCceeEEEEEEc-----cCcc-eeeeEEEEE
Q psy2776 727 --------NIILELKEADSETDAGDYKVVATN-----ELGS-ATHGARVTV 763 (803)
Q Consensus 727 --------~~~L~i~~v~~~~D~G~Y~C~a~N-----~~G~-~~~~~~l~V 763 (803)
...|.|... ..+|+|.|+|.|.| ..|. .+..+.|.|
T Consensus 180 ~~~g~~~~~~~L~i~~~-~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 180 EASGLLSLTSTLYLRLR-KDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CTTSCEEEEEEEEEECC-GGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred cCCCeEEEEEEEEEecc-hhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 256888755 55569999999999 5666 566665554
No 169
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.81 E-value=8.8e-19 Score=177.93 Aligned_cols=191 Identities=13% Similarity=0.156 Sum_probs=132.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eee-----------------cCCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEI-----------------TDSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i-----------------~~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.|.| .+.+.|+|++ ..+ ....++.+..+ .+..+|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999999987 5789999842 111 01245555543 3467899999999
Q ss_pred CcCeEEEEEEEcCCCC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCC
Q psy2776 574 ADTSTYTVTATNAAGS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~ 651 (803)
+|+|.|+|.|.|..+. ....+.|.|...+... +..
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~------------------------------------------~~~- 127 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGS------------------------------------------GGG- 127 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC-------------------------------------------------
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEecccccc------------------------------------------ccc-
Confidence 9999999999997322 1223456665432000 000
Q ss_pred CccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeec------------cCCC
Q psy2776 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPL------------LSSP 717 (803)
Q Consensus 652 ~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l------------~~~~ 717 (803)
.+.....+|.+...+....+.+|++++|.|.+.|.|.+.+.|+| ++..+ ....
T Consensus 128 -------------~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~ 194 (247)
T 2ghw_B 128 -------------GSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPD 194 (247)
T ss_dssp -------------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCT
T ss_pred -------------ccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCC
Confidence 00001125566666677889999999999999999999999999 55443 1245
Q ss_pred CeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 718 KKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 718 ~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
++.+..++...+|.|.++ +.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 195 r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 195 RFSGSGSGTDFTLTISRL-EPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp TEEEECSSSEEEEEECSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CEEEecCCCeEEEEECcC-CHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 666655667788999999 7999999999999965443 344566664
No 170
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=169.45 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEEC-ccCCCeeEEEEcCeeccce---eEEEe--cC-------eeEEEEecCCCCcce
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVS-GVPTPDIKWYKDDSLIKGR---NITYE--NN-------VARFTVVNCSESSEG 210 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~-g~p~p~i~W~~~~~~~~~~---~~~~~--~~-------~~~L~i~~v~~~d~G 210 (803)
+|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+... +.... .. ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 56788888999999999999999999 8999999999999988644 22222 21 468999999999999
Q ss_pred EEEEEEEcCCcCeee-EEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 211 RYTCKATNEAGTAET-SCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 211 ~Y~C~a~n~~g~~~~-s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|+|.+.|..|.... .+.|.|...|.
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~----------------------------------------------------- 108 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGLPY----------------------------------------------------- 108 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCSCE-----------------------------------------------------
T ss_pred EEEEEEEeCCCceecccEEEEEecCCe-----------------------------------------------------
Confidence 999999998876543 36777765420
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCce-eeEEeecCeeccccceeEEEEcCceeEEEEee
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKR 367 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 367 (803)
+. ..+....+.+|+.+.|.|.+ +.|.+ .+.|+++|..+...... .....|.|.+
T Consensus 109 ------------------~~-~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~ 164 (195)
T 2c5d_C 109 ------------------FL-EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPG 164 (195)
T ss_dssp ------------------EE-ECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECC
T ss_pred ------------------EE-cCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcc
Confidence 10 11223455679999999999 89999 99999999988765443 3446789998
Q ss_pred cCCCCCccEEEEEeccccce
Q psy2776 368 VTQDDETDIGVLALNVKSVS 387 (803)
Q Consensus 368 ~~~~d~g~y~c~~~~~~~~~ 387 (803)
+. |+|.|+|.|.|..|..
T Consensus 165 ~~--d~G~Y~C~a~N~~g~~ 182 (195)
T 2c5d_C 165 LN--KTSSFSCEAHNAKGVT 182 (195)
T ss_dssp CS--SCEEEEEEEEETTEEE
T ss_pred cc--cCceEEEEEEcCCCce
Confidence 87 7899999999987654
No 171
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.80 E-value=2.9e-19 Score=182.31 Aligned_cols=129 Identities=14% Similarity=0.186 Sum_probs=84.7
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.|.|..+..... ...|.
T Consensus 109 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~-----------------------------------------~~~l~ 147 (254)
T 2c1o_A 109 SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGA-----------------------------------------GTKLE 147 (254)
T ss_dssp ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBC-----------------------------------------CEEEE
T ss_pred CCCEEEEEECcCCcccCEEEEEEEEcCcceEecC-----------------------------------------CEEEE
Confidence 3456689999999999999999999875432221 12233
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCC-c-EEEEecCC-----eEEEEEe
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSK-A-CRIFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~-~-~~~~~~~~-----~~~L~i~ 569 (803)
|...+..|.+.+... ......|+.+.|.|.+.|.++ +.+.|+|+|..+..+. . .......+ .+.|.|.
T Consensus 148 V~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~ 224 (254)
T 2c1o_A 148 LKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 224 (254)
T ss_dssp ECCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred ECCCCCCCeeEeecC---ChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEec
Confidence 333222222222111 111235789999999988544 4699999999887651 1 11111111 4689999
Q ss_pred eeccCcCeEEEEEEEcCCCCeE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
++..+|+|.|+|.|.|......
T Consensus 225 ~~~~~d~G~Y~C~a~n~~~~~~ 246 (254)
T 2c1o_A 225 KDEYERHNSYTCEATHKTSTSP 246 (254)
T ss_dssp HHHHHTCCEEEEEEECTTCSSC
T ss_pred cccccCCCeEEEEEEcCCCCCc
Confidence 9999999999999999977643
No 172
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.80 E-value=3e-19 Score=176.85 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=123.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee----------cC--CCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI----------TD--SKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i----------~~--~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|++ ..+ .. ..++.+........|.|.++..+|+|.|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (213)
T 3d9a_L 10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ 89 (213)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence 577899999999999999998999999853 211 11 2456665555677999999999999999999
Q ss_pred EEcCCCCeE-EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGSTS-LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~s-~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+... ....|.|...
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 109 (213)
T 3d9a_L 90 QSNSWPYTFGGGTKLEIKRA------------------------------------------------------------ 109 (213)
T ss_dssp ECSSSSCEECCCEEEEECCC------------------------------------------------------------
T ss_pred eecCCcceeCCCEEEEEecC------------------------------------------------------------
Confidence 999877532 2335555331
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeE--EEe--eC---ceEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKR--EIF--DG---ENIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~--~~~--~~---~~~~L~i 732 (803)
..+|.+........+..|+.++|.|.+.| .|.+ .+.|+++|.++..+.... ... ++ ....|.|
T Consensus 110 --------~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 181 (213)
T 3d9a_L 110 --------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 181 (213)
T ss_dssp --------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred --------CCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEE
Confidence 11455554443333447999999999988 5665 899999999986651110 011 11 1358999
Q ss_pred ecCCCCCCceeEEEEEEccCccee
Q psy2776 733 KEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++ ..+|+|.|+|.|.|......
T Consensus 182 ~~~-~~~d~G~Y~C~a~n~~~~~~ 204 (213)
T 3d9a_L 182 TKD-EYERHNSYTCEATHKTSTSP 204 (213)
T ss_dssp EHH-HHHHCCEEEEEEECTTCSSC
T ss_pred ecc-ccCCCCEEEEEEEEccCCCc
Confidence 999 78999999999999887754
No 173
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.80 E-value=5.1e-19 Score=180.82 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=130.1
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Cee---ec-------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAE---IT-------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~---i~-------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+.++|.|.+.|.| .+.+.|+|+ +.. +. ...++.+..+ ....+|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (257)
T 1f3r_B 9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (257)
T ss_dssp CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence 35688999999999999985 689999986 221 10 1245555542 45679999999999
Q ss_pred cCeEEEEEEEcCCCC------e---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 575 DTSTYTVTATNAAGS------T---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~------~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
|+|.|.|.|.|..|. . ...+.|.|...+.
T Consensus 89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~------------------------------------------ 126 (257)
T 1f3r_B 89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGG------------------------------------------ 126 (257)
T ss_dssp CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCC------------------------------------------
T ss_pred cCEEEEEEEcccccCccccccccccCCceEEEEEeCCc------------------------------------------
Confidence 999999999998651 1 1234555544210
Q ss_pred CCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeecc---------
Q psy2776 646 SVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL--------- 714 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l~--------- 714 (803)
..+. ..+.....++.+...+....+.+|++++|.|.+.|.|.+.+.|+| +|..+.
T Consensus 127 ~~~~--------------~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~ 192 (257)
T 1f3r_B 127 GSGG--------------GGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSL 192 (257)
T ss_dssp SSCC--------------SSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEE
T ss_pred cccc--------------cccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCC
Confidence 0000 000001113344455556778999999999999999989999999 554331
Q ss_pred ---CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 715 ---SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 715 ---~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
...++.+..++....|.|.++ +.+|+|.|+|.|.|....-.....|.|+
T Consensus 193 ~~~~~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~~~~g~gt~l~V~ 244 (257)
T 1f3r_B 193 QTGIPSRFSGSGSGTDYTLTISSL-QPEDVATYFCYQYNNGYTFGAGTKLELK 244 (257)
T ss_dssp CTTCCTTEEEEEEBTEEEEEECSC-CGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred CCCcCCCEEEecCCCEEEEEECCC-ChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence 135666665667789999999 7999999999999975222344556663
No 174
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.80 E-value=2.2e-18 Score=175.84 Aligned_cols=176 Identities=13% Similarity=0.194 Sum_probs=129.9
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+ +..+. ...++.+..+ .+..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (256)
T 1nqb_A 9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS 88 (256)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence 46788999999999999876 579999984 22220 1245555543 3467999999999
Q ss_pred CcCeEEEEEEEcCCCC-----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 574 ADTSTYTVTATNAAGS-----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~-----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+|+|.|.|.|.|..|. ....+.|.|..
T Consensus 89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~------------------------------------------------ 120 (256)
T 1nqb_A 89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS------------------------------------------------ 120 (256)
T ss_dssp GGCEEEEEEECCTTSSSSCSEECCCEEEEECC------------------------------------------------
T ss_pred hhCEEEEEEEeeccCccceeEEcCceeeeecc------------------------------------------------
Confidence 9999999999998663 11234455533
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-----ceEEee--CCeecc-------
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-----SIVWFR--NNKPLL------- 714 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-----~v~W~~--~~~~l~------- 714 (803)
+|.+...+....+.+|++++|.|.+.|.|.+ .+.|+| +|..+.
T Consensus 121 -----------------------~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~ 177 (256)
T 1nqb_A 121 -----------------------DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVS 177 (256)
T ss_dssp -----------------------CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTT
T ss_pred -----------------------cccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeC
Confidence 4555566667789999999999999998875 999999 555431
Q ss_pred -----CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEE
Q psy2776 715 -----SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 715 -----~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
...++.........+|.|.++ +.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 178 ~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 178 NRFSGVPDRFSGSGSGTDFTLKISRV-EAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp EECTTCCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCCccCCcEEEEccCCEEEEEECCC-ChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 135666666667789999999 7999999999999965432 334556664
No 175
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.79 E-value=1.6e-19 Score=178.61 Aligned_cols=129 Identities=20% Similarity=0.267 Sum_probs=102.4
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+..|.... .+.|.|.
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~------------------------------------------~~~l~V~ 119 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAPGVANK------------------------------------------KFLLTVL 119 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEEEE------------------------------------------EEEEEEE
T ss_pred CcccEEEccCChhhCeEEEEEEEeCCCcccc------------------------------------------EEEEEEE
Confidence 5667999999999999999999998876654 5667777
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCC--eeecCCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNG--AEITDSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g--~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
.+|.++.... ...+.+|+.+.|.|.+ .|.|.+.+.|++++ ..+..... ....+..|.|.++..+|+|
T Consensus 120 ~~p~~~~~~~------~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G 189 (214)
T 3jz7_A 120 VKPSGTRCFV------DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL----AEMTSPVISVKNASSEYSG 189 (214)
T ss_dssp CCCBSCEEEE------ESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG----GGTTSSEEEECSCCGGGCE
T ss_pred cCCCCceeee------ecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce----eccCCCEEEEecCCHHHCE
Confidence 7777654432 2336789999999999 89999999999954 33332211 1223459999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
.|+|.|.|..|..+.++.|.|..+
T Consensus 190 ~Y~C~a~N~~g~~~~~~~l~V~~P 213 (214)
T 3jz7_A 190 TYSCTVQNRVGSDQCMLRLDVVPP 213 (214)
T ss_dssp EEEEEEECSSCEEEEEEEECCBCC
T ss_pred EEEEEEEcCCCcEEEEEEEEEeCC
Confidence 999999999999999999998754
No 176
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.79 E-value=6.9e-19 Score=172.66 Aligned_cols=179 Identities=11% Similarity=0.132 Sum_probs=124.4
Q ss_pred CceeeeccccceeEEEEe-cCCc-----eeeEEee-cCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccc
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPD-----IQVKWLK-KGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKS 385 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~-----~~i~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~ 385 (803)
+....+.+|+++.|.|.+ +.|. +.+.|+| ++.......+..+..++
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~--------------------------- 61 (202)
T 3bp6_B 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQ--------------------------- 61 (202)
T ss_dssp CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGG---------------------------
T ss_pred CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeecc---------------------------
Confidence 345667789999999999 6765 8999999 44333322222211110
Q ss_pred ceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEe
Q psy2776 386 VSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVS 465 (803)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~ 465 (803)
...+...|.|.+++.+|+|.|+|.+.+..+....
T Consensus 62 --------------------------------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~-------------- 95 (202)
T 3bp6_B 62 --------------------------------LPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYK-------------- 95 (202)
T ss_dssp --------------------------------GGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEE--------------
T ss_pred --------------------------------ccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceE--------------
Confidence 0124467999999999999999999998876644
Q ss_pred eeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeC
Q psy2776 466 LRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN 545 (803)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~ 545 (803)
.+.|.|..+|..|.+.+ ..+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus 96 ----------------------------~~~l~V~~~~~~p~~~~-------~~~~~g~~v~l~C~~~g~P~p~v~W~~~ 140 (202)
T 3bp6_B 96 ----------------------------YLTVKVKASYMRIDTRI-------LEVPGTGEVQLTCQARGYPLAEVSWQNV 140 (202)
T ss_dssp ----------------------------EEEEEEEBCCCCEEEEE-------EECTTTCCEEEEEEEEEBSCCEEEETTC
T ss_pred ----------------------------EEEEEecCCCCcccEEE-------EecCCCCeEEEEEEccccCCceEEEEeC
Confidence 45555555554443321 2345799999999999999999999998
Q ss_pred CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 546 GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 546 g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
+..+.. .......+....+.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 141 ~~~~~~--~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~ 194 (202)
T 3bp6_B 141 SVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194 (202)
T ss_dssp CSCCEE--EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC---
T ss_pred CCCccC--ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCc
Confidence 875532 111111222367788899999999999999999999999999888654
No 177
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.79 E-value=2.8e-18 Score=165.46 Aligned_cols=165 Identities=24% Similarity=0.344 Sum_probs=124.0
Q ss_pred eeeccccceeEEEEe-cCCce--eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 316 TLVPHLGDATFQVEL-SSPDI--QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~-~~p~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
..+.+|+.+.|.|.+ +.|.+ .+.|+|+|..+......
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------------------------------------- 47 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------------------------------------- 47 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----------------------------------------
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc----------------------------------------
Confidence 345679999999998 66665 99999999877653211
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
.....|.|. +.+|+|.|+|.|.|.. ..
T Consensus 48 ---------------------------~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~--------------------- 74 (184)
T 3b5h_A 48 ---------------------------GQKTEFKVD--SDDQWGEYSCVFLPEP---MG--------------------- 74 (184)
T ss_dssp ---------------------------CSEEEEEEC--GGGCCEEEEEEEESTT---SC---------------------
T ss_pred ---------------------------CCcEEEEEe--chhhCeEEEEEEECCc---Cc---------------------
Confidence 011234454 5789999999999721 11
Q ss_pred cCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcC-CCeeEEee---CCe-
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP-RPEISWMK---NGA- 547 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p-~~~v~W~~---~g~- 547 (803)
.+.|.|..+|.+.... ....+.+|+.+.|.|.+.|.| .+.+.|++ ++.
T Consensus 75 ---------------------~~~l~V~~~P~~~~~~------~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~ 127 (184)
T 3b5h_A 75 ---------------------TANIQLHGPPRVKAVK------SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127 (184)
T ss_dssp ---------------------EEEEEECCSCCCEESC------SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCE
T ss_pred ---------------------EEEEEEecCCceeecC------CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCE
Confidence 4556666777543221 345688999999999999999 79999999 444
Q ss_pred eecCC--CcEEEEecCCeEEEEEeeec-cCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 548 EITDS--KACRIFIDEETSTIAIYSVV-RADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 548 ~i~~~--~~~~~~~~~~~~~L~i~~v~-~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+... .++.+......+.|.|.++. .+|+|.|+|.|.|..|....++.|.|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 44332 56777766777899999999 8999999999999999999999998864
No 178
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.79 E-value=7.7e-19 Score=173.56 Aligned_cols=174 Identities=25% Similarity=0.420 Sum_probs=128.1
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-------eEEEecCe---eEEEEecCCCCcceE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-------NITYENNV---ARFTVVNCSESSEGR 211 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~~~~---~~L~i~~v~~~d~G~ 211 (803)
..+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .....++. ..|.|.+++.+|+|.
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence 35678888888899999999999999999999999999999877532 11222221 134556789999999
Q ss_pred EEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 212 YTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 212 Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
|+|.+.|..|.. ...+.|.|...+..
T Consensus 87 Y~C~~~n~~g~~~~~~~~l~V~~~~~~----------------------------------------------------- 113 (212)
T 2v9r_A 87 YVCVARNYLGEAVSHDASLEVAILRDD----------------------------------------------------- 113 (212)
T ss_dssp EEEEEEETTEEEECCCEEEEECEECSS-----------------------------------------------------
T ss_pred EEEEEECCCCceeecceEEEEEecccc-----------------------------------------------------
Confidence 999999998865 34567777654210
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeec
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 368 (803)
+...+....+..|+.+.|.|.+ +.|.+.+.|+++|..+..........+
T Consensus 114 ------------------~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~----------- 164 (212)
T 2v9r_A 114 ------------------FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG----------- 164 (212)
T ss_dssp ------------------CSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEET-----------
T ss_pred ------------------ceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccC-----------
Confidence 0111233445679999999997 689999999999988875432211111
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
..|.|.++..+|+|.|+|.|.|..|.
T Consensus 165 ------------------------------------------------------~~L~i~~~~~~d~G~Y~C~a~N~~g~ 190 (212)
T 2v9r_A 165 ------------------------------------------------------GKLMITYTRKSDAGKYVCVGTNMVGE 190 (212)
T ss_dssp ------------------------------------------------------TEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ------------------------------------------------------CeEEEeeCCHhhCeeEEEEEecccCc
Confidence 14888889999999999999999887
Q ss_pred eee
Q psy2776 449 AET 451 (803)
Q Consensus 449 ~~~ 451 (803)
...
T Consensus 191 ~~s 193 (212)
T 2v9r_A 191 RES 193 (212)
T ss_dssp EEC
T ss_pred eec
Confidence 655
No 179
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.79 E-value=6.4e-19 Score=174.08 Aligned_cols=171 Identities=13% Similarity=0.076 Sum_probs=121.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|++ ..+ ....++.+........|.|.++..+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (210)
T 1lk3_L 9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ 88 (210)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence 577899999999999999998999999852 221 112456555555667999999999999999999
Q ss_pred EEcCCCCeE-EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGSTS-LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~s-~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+... ....|.|...
T Consensus 89 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 108 (210)
T 1lk3_L 89 QSWNGPLTFGAGTKLELKRA------------------------------------------------------------ 108 (210)
T ss_dssp ECSSSSCEECCCEEEEECCC------------------------------------------------------------
T ss_pred EEcCCCceeCCCEEEEEcCC------------------------------------------------------------
Confidence 999876432 2334555331
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCC-CC-eEEEe--eCc---eEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS-PK-KREIF--DGE---NIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~-~~-~~~~~--~~~---~~~L~i 732 (803)
..+|.+...+....+..|+.++|.|.+.|. |.+ .|.|+++|.++..+ .. ..... ++. .+.|.|
T Consensus 109 --------~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 180 (210)
T 1lk3_L 109 --------DAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSL 180 (210)
T ss_dssp --------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred --------CcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEE
Confidence 114555544433334579999999999985 554 89999999988655 11 00111 111 247999
Q ss_pred ecCCCCCCceeEEEEEEccCccee
Q psy2776 733 KEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++ ..+|+|.|+|.|.|......
T Consensus 181 ~~~-~~~d~G~Y~C~a~n~~~~~~ 203 (210)
T 1lk3_L 181 TKA-DYESHNLYTCEVVHKTSSSP 203 (210)
T ss_dssp EHH-HHHTCCEEEEEEECTTCSSC
T ss_pred ChH-HhccCCcEEEEEEecCCCCe
Confidence 999 68999999999999877543
No 180
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.79 E-value=2.1e-18 Score=170.80 Aligned_cols=164 Identities=14% Similarity=0.137 Sum_probs=120.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++ .. +. ...++.+........|.|.+++.+|+|.|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (213)
T 3nl4_L 10 SVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECADAATYYCQ 89 (213)
T ss_dssp EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence 577899999999999999999999999852 11 10 13466665556678999999999999999999
Q ss_pred EEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 583 ATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 583 a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
|.|..+. ......|.|...
T Consensus 90 ~~~~~~~~~~~~~~~~l~V~~~---------------------------------------------------------- 111 (213)
T 3nl4_L 90 STYENPTYVSFGGGTEVGVKGD---------------------------------------------------------- 111 (213)
T ss_dssp ECCSSTTTCEECCCEEEEEECC----------------------------------------------------------
T ss_pred cCCCCceeEEeCCCeEEEEeCC----------------------------------------------------------
Confidence 9998763 333445555331
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCCceEEeeCCeeccCCCCeEEE----eeCc---eEEEE
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAPSIVWFRNNKPLLSSPKKREI----FDGE---NIILE 731 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~~~~~----~~~~---~~~L~ 731 (803)
..+|.+...+....+.+|+.++|.|.+.| .|.|.+.|+++|.++..+...... .++. ...|.
T Consensus 112 ----------~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~ 181 (213)
T 3nl4_L 112 ----------PVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLT 181 (213)
T ss_dssp ----------CBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEE
T ss_pred ----------CcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCeecccCcccCCCCeEEEEEEEE
Confidence 12566655554555667999999999998 899999999999988643200000 0111 25699
Q ss_pred EecCCCCCCceeEEEEEE
Q psy2776 732 LKEADSETDAGDYKVVAT 749 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~ 749 (803)
|.++ ..+|+|.|+|.|.
T Consensus 182 i~~~-~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 182 LTST-EYNSHKEYTCKVT 198 (213)
T ss_dssp EEHH-HHHTCCEEEEEEE
T ss_pred ecHH-HcCCCCeEEEEEE
Confidence 9999 6899999999999
No 181
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=169.69 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=69.5
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEE--ecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITY--ENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+|.|...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+....... ......|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV 81 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence 46777777776 7889999999999988 778999999998776432111 2456789999999999999999999998
Q ss_pred cC--eeeEEEEEEee
Q psy2776 221 GT--AETSCTLLVQG 233 (803)
Q Consensus 221 g~--~~~s~~l~V~~ 233 (803)
|. ....+.|.|..
T Consensus 82 g~~~~s~~~~l~V~~ 96 (196)
T 3p2t_A 82 GWSQPSDPLELVMTG 96 (196)
T ss_dssp EEBCCCCCEEEEEEC
T ss_pred cccCCCccEEEEecC
Confidence 83 33445666654
No 182
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.79 E-value=2e-19 Score=179.31 Aligned_cols=180 Identities=14% Similarity=0.191 Sum_probs=124.1
Q ss_pred ceEEeecceeEEEEEEcCcCC-----CeeEEeeCCeeec-------------CCCcEEEEe---cCCeEEEEEeeeccCc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-----PEISWMKNGAEIT-------------DSKACRIFI---DEETSTIAIYSVVRAD 575 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-----~~v~W~~~g~~i~-------------~~~~~~~~~---~~~~~~L~i~~v~~~d 575 (803)
...+.+|+.+.|.|.+.+.|. +.+.|++++.... ...+..+.. ..+...|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 355788999999999988764 7899999874320 112222211 1125689999999999
Q ss_pred CeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 576 TSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
+|.|+|.+.|. +..+..+.|.|..++
T Consensus 84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~----------------------------------------------------- 109 (222)
T 4i0k_A 84 EGSYTCFVSIQ-DFDSAAVSLQVAAPY----------------------------------------------------- 109 (222)
T ss_dssp CSCEEEEEEEC-CCCCCCCCCCCCBCC-----------------------------------------------------
T ss_pred CEEEEEEEEeC-CCceEEEEEEEEcCC-----------------------------------------------------
Confidence 99999999985 344444455443321
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEee-CCeeccCCCCeEEEe--eCceEEEE
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFR-NNKPLLSSPKKREIF--DGENIILE 731 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~-~~~~l~~~~~~~~~~--~~~~~~L~ 731 (803)
.+|.+...+ ...+.+|+.+.|.|.+ .|.|.|.+.|++ ++..+.......... ++....|.
T Consensus 110 ---------------~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (222)
T 4i0k_A 110 ---------------SKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHS 173 (222)
T ss_dssp ---------------CCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEE
T ss_pred ---------------CCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEE
Confidence 245444333 3467889999999999 889999999999 555554332222222 23455688
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEEeec
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVDVEK 767 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 767 (803)
|.++ +.+|+|.|+|.|.|.+|.....+.|.|.+++
T Consensus 174 i~~v-~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 208 (222)
T 4i0k_A 174 VLRV-VLGANGTYSCLVRNPVLQQDAHGSVTITGQP 208 (222)
T ss_dssp EEEE-ECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred EEEE-EeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence 9999 7899999999999999999999999986543
No 183
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=171.82 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=130.5
Q ss_pred ccccccCCceeeeccccceeEEEE-e-cCCc-eeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 306 VEFLSKLPSVTLVPHLGDATFQVE-L-SSPD-IQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 306 ~~~~~~~~~~~~~~~g~~~~l~C~-~-~~p~-~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
+.|....+....+.+|+.+.|.|. + +.|. +.+.|++++..+........
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~---------------------------- 59 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR---------------------------- 59 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSE----------------------------
T ss_pred CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCe----------------------------
Confidence 445555666777888999999999 6 7888 99999999877642111000
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
........|.|.+++.+|+|.|+|.+.+..+....... .+
T Consensus 60 ----------------------------------~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~------~~ 99 (201)
T 3s97_C 60 ----------------------------------FVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK------FI 99 (201)
T ss_dssp ----------------------------------EECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECC------CE
T ss_pred ----------------------------------EEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhc------cc
Confidence 00111234888889999999999999987655444210 00
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEE
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISW 542 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W 542 (803)
.+.+.... .....+|. +. . ......+.+|+.+.|.|.+.|.|.+.+.|
T Consensus 100 ~~~~~~~~--------------------------~~~~~~p~---~~--~-~~~~~~~~~g~~~~l~C~~~g~p~p~v~W 147 (201)
T 3s97_C 100 PLIPIPER--------------------------TTKPYPAD---IV--V-QFKDVYALMGQNVTLECFALGNPVPDIRW 147 (201)
T ss_dssp EEEEECCS--------------------------SCCCEEEE---EE--E-ECCCEEEETTCCEEEEEEEEEESCCEEEE
T ss_pred ceeecccc--------------------------ccCCCCCc---eE--e-cCCceEEecCCcEEEEEEccCCCCCceEE
Confidence 11110000 00001111 11 1 11256788999999999999999999999
Q ss_pred eeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 543 MKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 543 ~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
++++..+.... .+. ..+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 148 ~~~~~~~~~~~--~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 148 RKVLEPMPSTA--EIS--TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp EETTBCCCTTC--EEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeCCCcCCCce--eec--CCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 99999777542 222 235689999999999999999999999999999999885
No 184
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.78 E-value=1e-18 Score=173.49 Aligned_cols=184 Identities=24% Similarity=0.394 Sum_probs=132.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-----eEEEecCee--EEEEecCCCCcceEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-----NITYENNVA--RFTVVNCSESSEGRYTC 214 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~--~L~i~~v~~~d~G~Y~C 214 (803)
..+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++...++.. .|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence 56889999889999999999999999999999999999999887642 222222222 23788999999999999
Q ss_pred EEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccce
Q psy2776 215 KATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTA 293 (803)
Q Consensus 215 ~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (803)
.+.|..|... ..+.|.|...+..
T Consensus 87 ~~~n~~g~~~~~~~~l~v~~~~~~-------------------------------------------------------- 110 (217)
T 2vr9_A 87 VAKNRVGQAVSRHASLQIAVLRDD-------------------------------------------------------- 110 (217)
T ss_dssp EEEETTEEEECCCEEEEECEECCS--------------------------------------------------------
T ss_pred EEecCCCccccccceEEEEEeCCC--------------------------------------------------------
Confidence 9999888653 3566666554210
Q ss_pred eeeeeccCCCccccccccCCceeeeccccceeEEEEe--cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCC
Q psy2776 294 WFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQD 371 (803)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~ 371 (803)
+ ...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.............
T Consensus 111 --------------~-~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~------------ 163 (217)
T 2vr9_A 111 --------------F-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR------------ 163 (217)
T ss_dssp --------------C-SBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCS------------
T ss_pred --------------c-EECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCc------------
Confidence 0 111223445679999999997 78999999999999887543221111110
Q ss_pred CCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 372 DETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 372 d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
.... ....|.|.+++.+|+|.|+|.|.|..|....
T Consensus 164 --------------------------------------------~~~~-~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~ 198 (217)
T 2vr9_A 164 --------------------------------------------VRIV-DGGNLLISNVEPIDEGNYKCIAQNLVGTRES 198 (217)
T ss_dssp --------------------------------------------EEEE-TTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred --------------------------------------------EEec-CCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence 0111 1125889999999999999999999998877
Q ss_pred ec
Q psy2776 452 RT 453 (803)
Q Consensus 452 ~~ 453 (803)
+.
T Consensus 199 ~~ 200 (217)
T 2vr9_A 199 SY 200 (217)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 185
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.78 E-value=1.2e-18 Score=171.18 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=67.1
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..|.+...+....+.+|+.+.|.|.+.+.|.+. +.|+|++..+.... ..|.|.+++.+|+|.|+|.+.|.
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------~~L~i~~v~~~D~G~Y~C~a~n~-- 76 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------SSYFIDAATVDDSGEYRCQTQLS-- 76 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------SEEEESSCCGGGCEEEEEEETTS--
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------cEEEEecccccCCEEEEEEeCCC--
Confidence 456777777778899999999999999988776 99999998776432 68999999999999999999874
Q ss_pred CeeeEEEEEEeee
Q psy2776 222 TAETSCTLLVQGK 234 (803)
Q Consensus 222 ~~~~s~~l~V~~~ 234 (803)
.....+.|.|...
T Consensus 77 ~~s~~~~l~V~~~ 89 (204)
T 3sgj_C 77 TLSDPVQLEVHIG 89 (204)
T ss_dssp BCCCCEEEEEECS
T ss_pred cccccEEEEEecC
Confidence 3344566666544
No 186
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.78 E-value=1.5e-19 Score=178.16 Aligned_cols=188 Identities=15% Similarity=0.313 Sum_probs=130.6
Q ss_pred cCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 311 KLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
..+....+.+|+.+.|.|.+ +.|.+.+.|++++..+.... ...+. ....
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~--------~~~~------------------ 58 (209)
T 1nbq_A 9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV----CYNNK--------ITAS------------------ 58 (209)
T ss_dssp CSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEES----EETTE--------ECTT------------------
T ss_pred cCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEE----EecCc--------cCcc------------------
Confidence 34455666779999999999 77999999999875532100 00000 0000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
...++...+ ..|.|.+++.+|+|.|+|.+.+..|....+
T Consensus 59 ----------------------~~~r~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~----------------- 97 (209)
T 1nbq_A 59 ----------------------YEDRVTFLP--TGITFKSVTREDTGTYTCMVSEEGGNSYGE----------------- 97 (209)
T ss_dssp ----------------------TTTTCEEET--TEEECSCCCTTSCSEEEEEEEETTSSCEEC-----------------
T ss_pred ----------------------ccCceEeec--cEEEEeeCCHHHCcEEEEEEecCCCCccce-----------------
Confidence 001111122 569999999999999999999986633222
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCee
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAE 548 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~ 548 (803)
..+.|.|..+|..+.... ...+.+|+.+.|.|.+ .|.|.+.+.|+++|..
T Consensus 98 -----------------------~~~~l~V~~~p~~~~~~~------~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~ 148 (209)
T 1nbq_A 98 -----------------------VKVKLIVLVPPSKPTVNI------PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV 148 (209)
T ss_dssp -----------------------CEEECCEEBCCCCCCCCC------BSEEETTSCEEECCCCCSCBSCCEEEEEETTCC
T ss_pred -----------------------EEEEEEEecCCcCCCccc------ccceecCCEEEEEEeCCCCCCCceeEEEECCee
Confidence 156667777776655432 3457899999999996 8999999999999998
Q ss_pred ecCCCcE-------EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeE--EEEEEEE
Q psy2776 549 ITDSKAC-------RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTS--LDLSLQV 598 (803)
Q Consensus 549 i~~~~~~-------~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s--~s~~l~V 598 (803)
+...... ........+.|.|.++..+|+|.|+|.|.|..|... ..+.|.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 149 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred CCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 8765321 111223457899999999999999999999999984 4444444
No 187
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=169.35 Aligned_cols=132 Identities=22% Similarity=0.207 Sum_probs=87.5
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE--EEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI--TYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
.+|.|...+.. .+.+|++++|.|.+.+.|. .+.|+|++..+..... ........|.|.+++.+|+|.|+|.+.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 46777776664 7889999999999988765 8999999987653221 123456789999999999999999999987
Q ss_pred cCee--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeee
Q psy2776 221 GTAE--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWF 298 (803)
Q Consensus 221 g~~~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (803)
|... ..+.|.|...+.
T Consensus 82 g~~~~s~~~~l~V~~~~~-------------------------------------------------------------- 99 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYN-------------------------------------------------------------- 99 (196)
T ss_dssp EECBCCCCEEEEEECSSC--------------------------------------------------------------
T ss_pred CcCCcCccEEEEecCCCC--------------------------------------------------------------
Confidence 7543 345666654310
Q ss_pred ccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeecc
Q psy2776 299 ESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIK 347 (803)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~ 347 (803)
.+.+. ..+. ..+.+|+.++|.|.+ +.| +.+.|+|+|..+.
T Consensus 100 ------~p~i~-~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~ 140 (196)
T 2d3v_A 100 ------KPTLS-ALPS-PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKL 140 (196)
T ss_dssp ------CCEEE-C------------CEEEEEESSCC-SEEEEEEC---CC
T ss_pred ------CCeEE-ccCC-ccccCCCcEEEEEEcCCCC-CEEEEEccCCccc
Confidence 01111 1111 345679999999999 777 8999999988775
No 188
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.78 E-value=2.9e-18 Score=174.79 Aligned_cols=192 Identities=14% Similarity=0.176 Sum_probs=130.6
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceee-----------------cCCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEI-----------------TDSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i-----------------~~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|. +..+ ....++.+..+ ....+|.|.+++.
T Consensus 10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 89 (253)
T 3uzq_A 10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTS 89 (253)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCc
Confidence 56788999999999999854 678999982 2111 01134555433 2356799999999
Q ss_pred CcCeEEEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 574 ADTSTYTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|+|.|.|.|.|..+.. .....|.|...+ .+...
T Consensus 90 ~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------~~~~~- 124 (253)
T 3uzq_A 90 GDTAVYYCSRGWEGFAYWGQGTLVTVSAGG--------------------------------------------GGSGG- 124 (253)
T ss_dssp GGCEEEEEEECSSSCCEECCCEEEEECSSS--------------------------------------------CCCCC-
T ss_pred ccCEEEEEEEeeCCccEECCCcEEEEecCC--------------------------------------------ccccc-
Confidence 99999999999966553 244556664310 00000
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC----ceEEeeC--Ceecc------------
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP----SIVWFRN--NKPLL------------ 714 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~----~v~W~~~--~~~l~------------ 714 (803)
........+|.+...+....+.+|++++|.|.+.+.|.+ .+.|+|+ +..+.
T Consensus 125 -----------~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~ 193 (253)
T 3uzq_A 125 -----------GGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESG 193 (253)
T ss_dssp --------------------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTT
T ss_pred -----------cccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCc
Confidence 000001125667777777899999999999999998887 8999995 22211
Q ss_pred CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEe
Q psy2776 715 SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765 (803)
Q Consensus 715 ~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 765 (803)
...++.....+...+|.|.++ +.+|+|.|.|.|.|..+.. ..-..|.|..
T Consensus 194 ~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 194 IPARFSGSGSRTDFTLTINPV-EADDVATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp CCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred cCCceEEeCCCCEEEEEECCC-CHHHCEEEEEEEccCCCcEECCCEEEEEcC
Confidence 235666666677789999999 7999999999999976544 3345566753
No 189
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.78 E-value=7.9e-16 Score=181.85 Aligned_cols=405 Identities=14% Similarity=0.122 Sum_probs=228.1
Q ss_pred cCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCC-CCcceEEEEEEEcCCcCeeeEEEEEEeeeec
Q psy2776 158 FQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCS-ESSEGRYTCKATNEAGTAETSCTLLVQGKEI 236 (803)
Q Consensus 158 ~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~ 236 (803)
.+..+.|.|.+.|.|.|.+.|.++|..+.... ...+.|..+. ...++.|+|.+.|..|..... .+.+...+.
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~~~~~ 162 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWN------RAELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVLGHPC 162 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSCE------EEEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEESSCC
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCcee------EEEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEeeeccc
Confidence 34589999999999999999999997664321 2346666553 344589999888877754321 111211100
Q ss_pred ccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccccccccCCcee
Q psy2776 237 KESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVT 316 (803)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (803)
...+.|. . +...
T Consensus 163 ------------------------------------------------------------------~~~p~~~-~-~~~~ 174 (731)
T 2v5y_A 163 ------------------------------------------------------------------TRTPHFL-R-IQNV 174 (731)
T ss_dssp ------------------------------------------------------------------SSSCEEC-C-CCCE
T ss_pred ------------------------------------------------------------------ccccccc-c-ccce
Confidence 0111222 1 2345
Q ss_pred eeccccceeEEEEe-cCCceeeE-Ee--ecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeee
Q psy2776 317 LVPHLGDATFQVEL-SSPDIQVK-WL--KKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~~p~~~i~-W~--~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~ 392 (803)
.+..|+++.|.|.+ |.|.+.+. |+ ++|..+.......+..
T Consensus 175 ~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~------------------------------------ 218 (731)
T 2v5y_A 175 EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS------------------------------------ 218 (731)
T ss_dssp EEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCS------------------------------------
T ss_pred EEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEecc------------------------------------
Confidence 66789999999999 89999988 88 6777765322110000
Q ss_pred ecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcc
Q psy2776 393 DFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTR 472 (803)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~ 472 (803)
......|+|.++...|.|.|+|.|.|..|.....
T Consensus 219 --------------------------~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~-------------------- 252 (731)
T 2v5y_A 219 --------------------------RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN-------------------- 252 (731)
T ss_dssp --------------------------SEEEEEEEECSCCTTTCEEEEEEEEETTEEEECC--------------------
T ss_pred --------------------------ccceEEEEEcccccccCeEEEEEEECCCCCccee--------------------
Confidence 0112469999999999999999999999874331
Q ss_pred cCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc----CCC--eeEEeeCC
Q psy2776 473 VKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF----PRP--EISWMKNG 546 (803)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~----p~~--~v~W~~~g 546 (803)
...|.|..+|..+.... ........+.|.|..... |.. .+.|...+
T Consensus 253 ---------------------~~~l~V~~~P~~~~~p~-------~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~ 304 (731)
T 2v5y_A 253 ---------------------YAELVVKEPPVPIAPPQ-------LASVGATYLWIQLNANSINGDGPIVAREVEYCTAS 304 (731)
T ss_dssp ---------------------CEEEEEECCCCBSSCCE-------EEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESS
T ss_pred ---------------------eEEEEEecCCCCCCCcc-------eeccCCceEEEEeCCcccCCCCccEEEEEEEEECC
Confidence 34455666665433221 111234578888875322 222 45565543
Q ss_pred eeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE--cCCCCeEEEEEEEEeee-------E--e----Eeeecccc
Q psy2776 547 AEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT--NAAGSTSLDLSLQVLGY-------I--I----QQQEKNSL 611 (803)
Q Consensus 547 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~--n~~g~~s~s~~l~V~~~-------p--~----~~~~~~~~ 611 (803)
. ............+.|.++...+...|.|.|. |..|....+..+.+... | + .......+
T Consensus 305 ~------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l 378 (731)
T 2v5y_A 305 G------SWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITI 378 (731)
T ss_dssp S------SCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEE
T ss_pred C------CceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEE
Confidence 1 1111122234678999999999999999999 99887543322222211 1 0 00001112
Q ss_pred cE-------------------EEee------------eeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 612 KF-------------------TKVA------------TLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 612 ~w-------------------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
.| .... ........+++.+|.+...|.|+|+|.|..|.+. +.. +..
T Consensus 379 ~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~--~~~ 455 (731)
T 2v5y_A 379 RWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQE--LIV 455 (731)
T ss_dssp EEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCC--EEE
T ss_pred EEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-Cce--EEE
Confidence 22 2111 1224456789999999999999999999999874 332 222
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC---CC--ceEEeeCCee---ccC-CCCeEEEeeCceEEEE
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP---AP--SIVWFRNNKP---LLS-SPKKREIFDGENIILE 731 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p---~~--~v~W~~~~~~---l~~-~~~~~~~~~~~~~~L~ 731 (803)
.+....+..+....+.. ......+.|.-.....+ -. .|.|...+.. +.. .....+...+....+.
T Consensus 456 ~T~~~~P~~p~~~~~~~------~~~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (731)
T 2v5y_A 456 QTDEDLPGAVPTESIQG------STFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFL 529 (731)
T ss_dssp ECCCCCCCCCCTTTCEE------EEETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEE
T ss_pred EccCCCCCCCCcceEEe------eecCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEE
Confidence 22222222111111111 11134555554322111 11 2334332211 111 1122233344555788
Q ss_pred EecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 732 LKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 732 i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|.++ .....-.++..|.|..|....+. +.+.
T Consensus 530 i~~L-~p~t~Y~~~V~A~n~~G~g~~s~-~~~~ 560 (731)
T 2v5y_A 530 FFGL-YPGTTYSFTIRASTAKGFGPPAT-NQFT 560 (731)
T ss_dssp ECSC-CTTEEEEEEEEEEETTEEEEEEE-EEEE
T ss_pred ecCC-CCCCEEEEEEEEEeCCccCCCcc-cEEE
Confidence 8888 55555667889999999876653 4443
No 190
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.78 E-value=2.8e-18 Score=168.21 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=115.1
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCC-----CCeE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAA-----GSTS 591 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~-----g~~s 591 (803)
..+.+|++++|.|.+.+ |.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.|.|.. ...+
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s 95 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence 56789999999999974 77899999999765432111 11112235789999999999999999998753 2234
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|...+ .
T Consensus 96 ~~~~l~V~~~~--------------------------------------------------------------------~ 107 (201)
T 1nkr_A 96 DPLDIVIIGLY--------------------------------------------------------------------E 107 (201)
T ss_dssp CCEEEEEECSS--------------------------------------------------------------------C
T ss_pred CCEEEEeeccC--------------------------------------------------------------------C
Confidence 55666664421 1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC-ceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-ENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+. ..+.+|++++|+|.+.+ |.+.+.|+|+|..+...........+ ....|.|.++ + |+|.|+|.|.|
T Consensus 108 ~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~--d~G~Y~C~a~~ 182 (201)
T 1nkr_A 108 KPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA-T--HGGTYRCFGSF 182 (201)
T ss_dssp CCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEEC-C--SCEEEEEEEEE
T ss_pred CCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCc-C--CCeeEEEEEEc
Confidence 555655443 47889999999999986 67899999999877543222222222 2568999999 5 99999999997
Q ss_pred cC
Q psy2776 751 EL 752 (803)
Q Consensus 751 ~~ 752 (803)
..
T Consensus 183 ~~ 184 (201)
T 1nkr_A 183 HD 184 (201)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 191
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.78 E-value=3.2e-18 Score=167.71 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=64.0
Q ss_pred eeeecCCcEEEEEEECccCCCeeEEEEcC-eeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 154 SVAGFQSSVTLECVVSGVPTPDIKWYKDD-SLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
..+.+|+.+.|.|.+.|.|.|.+.|+++. ..+. ......+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~ 89 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEE
Confidence 34459999999999999999999999843 2222 233344456779999999999999999999998877777888887
Q ss_pred eee
Q psy2776 233 GKE 235 (803)
Q Consensus 233 ~~~ 235 (803)
..|
T Consensus 90 ~~p 92 (202)
T 1vca_A 90 SFP 92 (202)
T ss_dssp BCC
T ss_pred eCC
Confidence 653
No 192
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.78 E-value=1.7e-18 Score=172.31 Aligned_cols=177 Identities=13% Similarity=0.163 Sum_probs=120.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|+ |..+. ...++.+..+ .+..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (219)
T 1c1e_H 9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN 88 (219)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence 46788999999999999875 688999987 33221 1235554432 3457999999999
Q ss_pred CcCeEEEEEEEcCCCCe----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 574 ADTSTYTVTATNAAGST----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|+|.|.|.|.|..+.. ...+.|.|...+
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------- 121 (219)
T 1c1e_H 89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK----------------------------------------------- 121 (219)
T ss_dssp GGCEEEEEEEEETTTTEEEEECCCEEEEECCCC-----------------------------------------------
T ss_pred ccCEEEEEEEeccCcccceeecCceEEEEecCC-----------------------------------------------
Confidence 99999999999986422 123455553311
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEEEeeCc-
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFDGE- 726 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~~- 726 (803)
..+|.+........+.+|+.+.|.|.+.| .|.| .|.|+++|..+...........+.
T Consensus 122 --------------------~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~ 181 (219)
T 1c1e_H 122 --------------------TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLY 181 (219)
T ss_dssp --------------------CBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCE
T ss_pred --------------------CCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeE
Confidence 12455544433345678999999999999 8999 999999998753111101111121
Q ss_pred --eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 727 --NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 727 --~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
...|.|... ..|.|.|+|.|.|..|.......|.
T Consensus 182 ~~~s~L~i~~~--~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 182 TLSSSVTVPSS--PRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp EEEEEEEEESS--STTTSCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEEEEEecc--cCCCCEEEEEEEeCCCCccEEEecC
Confidence 246888554 3467999999999999876555443
No 193
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.78 E-value=1.9e-18 Score=171.71 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=120.4
Q ss_pred ceEEeecceeEEEEEEcCc-CCCeeEEeeCC--ee-------------ec-C--CCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-PRPEISWMKNG--AE-------------IT-D--SKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~g--~~-------------i~-~--~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+. |.+.+.|+|.. .. .. . ..++.+........|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 4678899999999999999 89999999832 10 10 0 13555544556788999999999999
Q ss_pred EEEEEEEcCCCC-----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 578 TYTVTATNAAGS-----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 578 ~Y~C~a~n~~g~-----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
.|.|.|.|..|. ....+.|.|...+
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 118 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQP-------------------------------------------------- 118 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCC--------------------------------------------------
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCC--------------------------------------------------
Confidence 999999998762 2334455554311
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeE--EEeeCc--
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKR--EIFDGE-- 726 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~--~~~~~~-- 726 (803)
..+|.+...+....+..|+.++|.|.+.| .|.+ .+.|+++|.++..+.... ...++.
T Consensus 119 -----------------~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 181 (218)
T 3s96_B 119 -----------------KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFM 181 (218)
T ss_dssp -----------------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEE
T ss_pred -----------------CCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEE
Confidence 12566655444445556899999999998 5777 899999999986532211 111222
Q ss_pred -eEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 727 -NIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 727 -~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...|.|... ..+|+|.|+|.|.|..|....++
T Consensus 182 ~~s~l~i~~~-~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 182 ASSFLHLTSD-QWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEEEEEEHH-HHHTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeHH-HccCCCeEEEEEEeCCCcccccc
Confidence 234888887 56889999999999998766544
No 194
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.78 E-value=6.5e-18 Score=174.58 Aligned_cols=191 Identities=15% Similarity=0.098 Sum_probs=128.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe-----eec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA-----EIT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-----~i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++. .+. ...++.+.......+|.|.++..+|+|.|.|.
T Consensus 21 ~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 100 (276)
T 3auv_A 21 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ 100 (276)
T ss_dssp EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEE
Confidence 5678899999999999999999999998642 121 12456665555667999999999999999999
Q ss_pred EEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+. ......|.|...+...
T Consensus 101 ~~n~~~~~~~~~~~l~V~~~~~~~-------------------------------------------------------- 124 (276)
T 3auv_A 101 QHYTTPPTFGCGTKVEIKGGGGGS-------------------------------------------------------- 124 (276)
T ss_dssp ECSSSSCCCCCCEEEEC---------------------------------------------------------------
T ss_pred EecCCcccccCCEEEEEecCCCcc--------------------------------------------------------
Confidence 9997654 2333566665432000
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCC--eec-----------------cCCCCeE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPL-----------------LSSPKKR 720 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~--~~l-----------------~~~~~~~ 720 (803)
...+.....++.++..+....+.+|++++|.|.+.|.| .+.+.|+|++ ..+ ....++.
T Consensus 125 -~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~ 203 (276)
T 3auv_A 125 -IEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFT 203 (276)
T ss_dssp -----------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEE
T ss_pred -ccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEE
Confidence 00000001133344455677899999999999999887 4899999963 211 1235666
Q ss_pred EEee--CceEEEEEecCCCCCCceeEEEEEEccC---cce--eeeEEEEEEe
Q psy2776 721 EIFD--GENIILELKEADSETDAGDYKVVATNEL---GSA--THGARVTVDV 765 (803)
Q Consensus 721 ~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~---G~~--~~~~~l~V~~ 765 (803)
+..+ .....|.|.++ +.+|+|.|+|.|.|.. +.. ....+|.|..
T Consensus 204 ~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~ 254 (276)
T 3auv_A 204 ISADTSKNTAYLQMNSL-RAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSS 254 (276)
T ss_dssp EEEEGGGTEEEEEECSC-CGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC-
T ss_pred EEecCCCcEEEEEECCC-ChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcc
Confidence 6554 45678999999 7999999999999983 221 2345677754
No 195
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.78 E-value=2.2e-18 Score=168.85 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=119.9
Q ss_pred ceEEeecceeEEEEEEc----CcCCCeeEEeeCCeeecC------------CCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF----GFPRPEISWMKNGAEITD------------SKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~----g~p~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+. +.|.+.+.|++++..+.. ..+..+. ..+...|.|.+++.+|+|.|+
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~ 81 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE 81 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence 46788999999999985 446789999999987631 0122221 224568999999999999999
Q ss_pred EEEEcCCCCeE-----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 581 VTATNAAGSTS-----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 581 C~a~n~~g~~s-----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.|..|... ..+.|.|...+
T Consensus 82 C~~~~~~g~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 108 (201)
T 1dr9_A 82 CVVLKYEKDAFKREHLAEVTLSVKADF----------------------------------------------------- 108 (201)
T ss_dssp EEEEECCTTSCEEEEEEEEEEEEECCC-----------------------------------------------------
T ss_pred EEEEcCCCCccccccccEEEEEEcCCC-----------------------------------------------------
Confidence 99999876643 45666664421
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEe-eCce-EEEEE
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIF-DGEN-IILEL 732 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~-~~L~i 732 (803)
..|.+... ....|+.+.|.|.+. |.|.|.|.|+++|.++.......... ++.. ....+
T Consensus 109 ---------------~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~ 169 (201)
T 1dr9_A 109 ---------------PTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSK 169 (201)
T ss_dssp ---------------CCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEE
T ss_pred ---------------CCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEE
Confidence 12333221 124588999999995 99999999999999987543322222 2232 22234
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
..+ ..+|.|.|+|.|.|..|..++.+.+
T Consensus 170 ~~v-~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 170 LDF-NMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEE-ETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEE-EecCCCEEEEEEecCcceeeeEEec
Confidence 455 5689999999999999998876654
No 196
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.78 E-value=2.7e-18 Score=169.79 Aligned_cols=174 Identities=11% Similarity=0.067 Sum_probs=122.2
Q ss_pred ceEEeecceeEEEEEEcCcC---CCeeEEeeCC--eee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP---RPEISWMKNG--AEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p---~~~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
...+.+|+.+.|.|.+.+.| .+.+.|+|++ ..+ ....++.+....+...|.|.+++.+|+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (212)
T 1q0x_L 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY 88 (212)
T ss_dssp EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEE
Confidence 57789999999999999987 4789999863 222 112455555555667999999999999999
Q ss_pred EEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceee
Q psy2776 580 TVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658 (803)
Q Consensus 580 ~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~ 658 (803)
.|.|.|..+.. .....|.|...+
T Consensus 89 ~C~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------------- 112 (212)
T 1q0x_L 89 FCALWSNNKLVFGGGTKLTVLGQP-------------------------------------------------------- 112 (212)
T ss_dssp EEEEECSSCEEECCCEEEEECCSC--------------------------------------------------------
T ss_pred EEEEecCchhhcCCCeEEEEecCC--------------------------------------------------------
Confidence 99999986532 122344442210
Q ss_pred eeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCe---EEEeeC---ceEEE
Q psy2776 659 ALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKK---REIFDG---ENIIL 730 (803)
Q Consensus 659 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~---~~~~~~---~~~~L 730 (803)
..+|.+...+....+..|+.++|.|.+.|.+++ .|.|+++|.++..+... ....++ ..+.|
T Consensus 113 -----------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L 181 (212)
T 1q0x_L 113 -----------KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYL 181 (212)
T ss_dssp -----------CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEE
T ss_pred -----------CCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEE
Confidence 125666554444445579999999999986443 89999999998655221 111112 23568
Q ss_pred EEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 731 ELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 731 ~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
.|..+ ..+|+|.|+|.|.|..+....+
T Consensus 182 ~i~~~-~~~d~g~Y~C~a~n~~~~~~~~ 208 (212)
T 1q0x_L 182 TLTAR-AWERHSSYSCQVTHEGHSSNKT 208 (212)
T ss_dssp EEEHH-HHTTCCEEEEEEEETTEEEEEE
T ss_pred EEcHH-HccCCCcEEEEEEeCCcceeee
Confidence 99998 6789999999999987764443
No 197
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.9e-18 Score=168.78 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=130.2
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
...+.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|
T Consensus 16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~ 89 (218)
T 3k0w_A 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHVKDAGFYVCRVNNNFT 89 (218)
T ss_dssp ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC------CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence 45678888889999999999999999999999999999999887643 346799999999999999999999987
Q ss_pred Ce-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeecc
Q psy2776 222 TA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFES 300 (803)
Q Consensus 222 ~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (803)
.. ...+.|.|...+........ .
T Consensus 90 ~~~s~~~~l~V~~~~~~~~~~~~--------------------------------------------------------~ 113 (218)
T 3k0w_A 90 FEFSQWSQLDVCDIPESFQRSVD--------------------------------------------------------G 113 (218)
T ss_dssp CEECCCEEEEEECCCGGGCTTCC--------------------------------------------------------S
T ss_pred CceeeEEEEEEEccCcccccccc--------------------------------------------------------c
Confidence 55 44577777765321100000 0
Q ss_pred CCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEE
Q psy2776 301 KSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVL 379 (803)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 379 (803)
.....+. +...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+.....
T Consensus 114 ~~~~~p~-~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------------------------- 164 (218)
T 3k0w_A 114 VSESKLQ-ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------------------------- 164 (218)
T ss_dssp BCCSSCE-EEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS----------------------------
T ss_pred ccCCCce-EEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC----------------------------
Confidence 0000111 1122344556779999999999 899999999999988865321
Q ss_pred EeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeee
Q psy2776 380 ALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 451 (803)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~ 451 (803)
..|.|.++..+|+|.|+|.|.|..|....
T Consensus 165 -------------------------------------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s 193 (218)
T 3k0w_A 165 -------------------------------------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193 (218)
T ss_dssp -------------------------------------------SEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred -------------------------------------------CEEEEeecChhcCEEEEEEEEcCCCCcee
Confidence 13778888899999999999998877554
No 198
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.77 E-value=7.6e-19 Score=173.67 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=125.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+. |.+.+.|+|+ +..+. ...++.+.......+|.|.++..+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 46788999999999998 8889999994 32221 22456555556678999999999999999999
Q ss_pred EEcCCC--CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 583 ATNAAG--STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 583 a~n~~g--~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
|.|..| .....+.|.|...
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~----------------------------------------------------------- 107 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQ----------------------------------------------------------- 107 (211)
T ss_dssp EEETTTEEEECCCEEEEECCS-----------------------------------------------------------
T ss_pred EecCCCceeECCCceEEEeCC-----------------------------------------------------------
Confidence 999887 3444456666421
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCCeeccCCCCe---EEEeeCc---eEEEEE
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKK---REIFDGE---NIILEL 732 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~~~l~~~~~~---~~~~~~~---~~~L~i 732 (803)
...+|.+...+....+.+|+.+.|.|.+.|.+ .+.+.|+++|.++..+... ....++. ...|.|
T Consensus 108 --------~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i 179 (211)
T 3tv3_L 108 --------PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSL 179 (211)
T ss_dssp --------CCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEE
T ss_pred --------CCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEE
Confidence 11266666655555555799999999999863 4789999999988642111 1111111 256889
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
..+ ..+|+|.|+|.|.|..|....++
T Consensus 180 ~~~-~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 180 TPE-QWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp CHH-HHHHSSCEEEEEEETTEEEEEEE
T ss_pred cHH-HhCCCCeEEEEEEECCCCEEeec
Confidence 988 57899999999999998766554
No 199
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=166.09 Aligned_cols=160 Identities=13% Similarity=0.181 Sum_probs=114.7
Q ss_pred cceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeec---CC---------------CcEEEEecCCeEEEEEeeeccCcC
Q psy2776 516 KSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEIT---DS---------------KACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~---~~---------------~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
....+.+|+++.|.|.+.+ .+.+.+.|+++|..+. .+ .++.+ . .+..|.|.+++.+|+
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~--~-~~~sL~I~~v~~~D~ 82 (193)
T 2if7_A 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF--T-QSYSLQLSNLKMEDT 82 (193)
T ss_dssp EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEE--C-TTCCEEECSCCGGGC
T ss_pred eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEE--C-CCeEEEECCCCcccC
Confidence 3577889999999999876 4457999999986542 11 12222 2 357899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
|.|+|.|.|..|.....+.|.|..++
T Consensus 83 G~Y~C~~~~~~~~~~~~~~L~V~~~~------------------------------------------------------ 108 (193)
T 2if7_A 83 GSYRAQISTKTSAKLSSYTLRILRQL------------------------------------------------------ 108 (193)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCC------------------------------------------------------
T ss_pred ceEEEEEEecCCCeEEEEEEEEEccC------------------------------------------------------
Confidence 99999999998887777888885532
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCC-eEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEec
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKE 734 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~ 734 (803)
..|.+.... ..+..|. .++|.|.+.|. |.|.+.|+++|..+..+ . .|.|..
T Consensus 109 --------------~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~---------~--~l~i~~ 161 (193)
T 2if7_A 109 --------------RNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ---------P--NLTVSW 161 (193)
T ss_dssp --------------EEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS---------S--EEEEEE
T ss_pred --------------CCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC---------C--eEEEEe
Confidence 023333222 1233465 89999999985 57899999999876332 2 355654
Q ss_pred CCCCCCceeEEEEEEccCcceeeeE
Q psy2776 735 ADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 735 v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
.....|+|.|+|.|.|.+|..+..+
T Consensus 162 ~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 162 DPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp CTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred ccCcCCCCcEEEEEECCCCcccccc
Confidence 4233489999999999999987654
No 200
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.77 E-value=1.1e-18 Score=186.81 Aligned_cols=174 Identities=17% Similarity=0.242 Sum_probs=135.8
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|++++..+.......
T Consensus 165 ~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~-------------------------------------- 206 (347)
T 2ifg_A 165 VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-------------------------------------- 206 (347)
T ss_dssp CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------------------------------------
T ss_pred CCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--------------------------------------
Confidence 344566789999999999 89999999999986654321100
Q ss_pred eecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCce-eEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEG-RYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.......|.|.+++.+|+| .|+|.|.|..|....
T Consensus 207 --------------------------~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~------------------- 241 (347)
T 2ifg_A 207 --------------------------GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV------------------- 241 (347)
T ss_dssp --------------------------CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE-------------------
T ss_pred --------------------------eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEE-------------------
Confidence 0123346899999999999 999999999887755
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeec
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEIT 550 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~ 550 (803)
.+.|.|..+|.+ . ...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.
T Consensus 242 -----------------------~~~l~V~~~P~i---~-------~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~ 288 (347)
T 2ifg_A 242 -----------------------SVQVNVSFPASV---Q-------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLN 288 (347)
T ss_dssp -----------------------EECCCCBEEEEE---E-------ECCCEESSSEEEEEEEEEESCCEEEEEETTEECC
T ss_pred -----------------------EEEEEEcCCCee---e-------eccCccCceEEEEEEeeecCCCcEEEEeCCEECC
Confidence 556666666653 0 1234679999999999999999999999999998
Q ss_pred CCCcEEEEecC-------CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 551 DSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 551 ~~~~~~~~~~~-------~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+......... ..++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 289 ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 66554433222 35789999999999999999999999999999999987754
No 201
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=165.82 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=65.0
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++.. .......|.|.+++.+|+|.|+|.+.|..|
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 76 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSL 76 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC-------CEESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc-------ccCcccEEEECcCChhhCceEEEEEEcCCC
Confidence 356777777664 7889999999999988 7889999999865 123456899999999999999999999876
Q ss_pred Cee--eEEEEEEee
Q psy2776 222 TAE--TSCTLLVQG 233 (803)
Q Consensus 222 ~~~--~s~~l~V~~ 233 (803)
... ..+.|.|..
T Consensus 77 ~~~~s~~~~l~V~~ 90 (184)
T 2gi7_A 77 WSLPSDQLELVATG 90 (184)
T ss_dssp EBCCCCCEEEEEES
T ss_pred ccCCCCCEEEEecC
Confidence 433 345566543
No 202
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.77 E-value=6.3e-19 Score=173.02 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=110.3
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.+|+++.|.|.+ |.+.+.|+|+|..+... ...+.+|.|.+++.+|+|.|+|.+.+... ..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~ 81 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYR 81 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEE
Confidence 3579999999998 78899999999887642 12356899999999999999999765322 22444443
Q ss_pred eeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEecc
Q psy2776 600 GYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERF 679 (803)
Q Consensus 600 ~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~ 679 (803)
..+ .|.+......-......... . ........++.+...+
T Consensus 82 ~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~p 121 (204)
T 1sy6_A 82 MGS-------------------------------------ADDAKKDAAKKDDAKKDDAK-K--DGSDGNEEMGGITQTP 121 (204)
T ss_dssp C----------------------------------------------------------------------------CCC
T ss_pred Eec-------------------------------------cccccccccccccccccccc-c--ccccccccccceecCC
Confidence 100 00000000000000000000 0 0000000022222222
Q ss_pred ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC-CeEEEeeCceEEEEEecC-CCCCCceeEEEEEEccCcce-e
Q psy2776 680 EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-KKREIFDGENIILELKEA-DSETDAGDYKVVATNELGSA-T 756 (803)
Q Consensus 680 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~L~i~~v-~~~~D~G~Y~C~a~N~~G~~-~ 756 (803)
. ....+|++++|.|. |.|.|.+.|+|+|..+.... ...+...+ ..|.|.++ . .+|+|.|+|.|.|..|.. +
T Consensus 122 ~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~~L~I~~v~~-~~D~G~Y~C~A~N~~g~~~s 195 (204)
T 1sy6_A 122 Y-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSE-LEQSGYYVCYPRGSKPEDAN 195 (204)
T ss_dssp C-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEET--TEEEETTCCH-HHHCEEEEEEETTSCGGGSS
T ss_pred c-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCC--CEEEEeeCCc-cccCEEEEEEeccCCCCcee
Confidence 1 12238999999998 78999999999999886542 22222223 36999988 5 689999999999999974 5
Q ss_pred eeEEEEEE
Q psy2776 757 HGARVTVD 764 (803)
Q Consensus 757 ~~~~l~V~ 764 (803)
..+.|.|+
T Consensus 196 ~~l~l~~~ 203 (204)
T 1sy6_A 196 FYLYLRAR 203 (204)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEEe
Confidence 66666554
No 203
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.77 E-value=8.9e-18 Score=171.60 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=128.4
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee-------------cCCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI-------------TDSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i-------------~~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|.+.+. +.+.+.|+|.. . .+ ....++.+..+ ....+|.|.+++.+
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 96 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE 96 (257)
T ss_dssp CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence 4568899999999999984 47899999842 1 11 01134555432 34568999999999
Q ss_pred cCeEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 575 DTSTYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
|+|.|.|.|.|..+. ......|.|...+. .+
T Consensus 97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------~~-- 131 (257)
T 3gkz_A 97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGG-------------------------------------------SG-- 131 (257)
T ss_dssp GCEEEEEEEECTTCTTCEEECCCEEEEEC---------------------------------------------------
T ss_pred hCEEEEEEEecCCCcceeEEcCCEEEeecCchh-------------------------------------------hc--
Confidence 999999999997322 22334566644210 00
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeC--Ceecc------------C
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRN--NKPLL------------S 715 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~--~~~l~------------~ 715 (803)
.........+|.+...+....+.+|++++|.|.+.+.|.+ .+.|+|+ +..+. .
T Consensus 132 ------------~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 199 (257)
T 3gkz_A 132 ------------GGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGV 199 (257)
T ss_dssp ---------------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTC
T ss_pred ------------ccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCc
Confidence 0000011124566666777889999999999999998888 9999984 22221 1
Q ss_pred CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEeecc
Q psy2776 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDVEKV 768 (803)
Q Consensus 716 ~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~ 768 (803)
..++.....+...+|.|.++ +.+|+|.|.|.|.|..... ..-..|.|...+.
T Consensus 200 ~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~ 252 (257)
T 3gkz_A 200 PARFSGSGSGTSYSLTISSM-EAEDAASYFCHQWSSFPFTFGSGTKLEIKRAPH 252 (257)
T ss_dssp CTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEECCC--
T ss_pred CCCEEEecCCCEEEEEECCC-ChHHCEEEEEEEccCCceEEcCCEEEEEEeCCC
Confidence 35666666667788999999 7999999999999954333 2233466653333
No 204
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.77 E-value=1.4e-18 Score=166.17 Aligned_cols=165 Identities=12% Similarity=0.211 Sum_probs=116.7
Q ss_pred ccccccccCCceeeeccccceeEEEEe-cCCcee-eEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQ-VKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~-i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
+.+.+... |....+.+|+.+.|.|.+ +.|.+. +.|+|+|..+...
T Consensus 6 ~~p~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------------------------- 52 (175)
T 1fnl_A 6 PKAVVFLE-PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------------------------- 52 (175)
T ss_dssp CCCEEEEE-SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS--------------------------------
T ss_pred CCCEEEEc-CCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC--------------------------------
Confidence 44444443 333456679999999999 677665 7899998776531
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
...|.|.+++.+|+|.|+|.+.|..+..
T Consensus 53 ----------------------------------------~~~L~i~~~~~~d~G~Y~C~~~n~~~s~------------ 80 (175)
T 1fnl_A 53 ----------------------------------------ASSYFIDAATVNDSGEYRCQTNLSTLSD------------ 80 (175)
T ss_dssp ----------------------------------------CSEEEESSCCGGGCEEEEEECSSSCCCC------------
T ss_pred ----------------------------------------ceEEEEeCCCcccCEEEEEEeeCCcccc------------
Confidence 1247888889999999999998844321
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-ee
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-EI 540 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v 540 (803)
.+.|.|..+|.. ... ....+.+|+.+.|.|.+.+.|++ .+
T Consensus 81 --------------------------------~~~l~V~~~~~~-----~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~ 121 (175)
T 1fnl_A 81 --------------------------------PVQLEVHIGWLL-----LQA--PRWVFKEEDPIHLRCHSWKNTALHKV 121 (175)
T ss_dssp --------------------------------CEEEEEECSSEE-----EEC--SCSEEETTCCEEEEEEECTTCCCEEE
T ss_pred --------------------------------cEEEEEeCCCce-----eeC--CCceecCCCCEEEEEEcCCCCCceEE
Confidence 223333322211 111 13557889999999999988764 99
Q ss_pred EEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEee
Q psy2776 541 SWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVLG 600 (803)
Q Consensus 541 ~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~~ 600 (803)
.|+|+|..+... .....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 122 ~W~k~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 122 TYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEECCeEccCC--------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 999999877421 12468999999999999999999997554 56677777754
No 205
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.77 E-value=3.4e-18 Score=167.12 Aligned_cols=174 Identities=13% Similarity=0.129 Sum_probs=113.8
Q ss_pred eeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecC
Q psy2776 317 LVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFG 395 (803)
Q Consensus 317 ~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 395 (803)
.+.+|++++|.|.+ +.|. .+.|+|+|..+.......
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~------------------------------------------ 51 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP------------------------------------------ 51 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC------------------------------------------
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc------------------------------------------
Confidence 66789999999999 5554 799999988774211100
Q ss_pred CCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCc-eeeeeecccCCCCceeEEeeeccCcccC
Q psy2776 396 SGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEA-GTAETRTMWPGLPLSIVVSLRKADTRVK 474 (803)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~ 474 (803)
........|.|.+++.+|+|.|+|.|.|.. |....+.
T Consensus 52 ---------------------~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~--------------------- 89 (198)
T 1ugn_A 52 ---------------------QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSD--------------------- 89 (198)
T ss_dssp ---------------------HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCC---------------------
T ss_pred ---------------------ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCc---------------------
Confidence 001123358888999999999999999877 5333221
Q ss_pred CchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc
Q psy2776 475 PPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA 554 (803)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~ 554 (803)
.+.|.|..++..|.+.. . ....+.+|+.+.|.|.+.+. .+.+.|+|+|..+.....
T Consensus 90 -------------------~~~l~V~~~~~~p~i~~--~--~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~ 145 (198)
T 1ugn_A 90 -------------------PLELVVTGAYIKPTLSA--Q--PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL 145 (198)
T ss_dssp -------------------CEEEEEECSSCCCEEEE--E--SCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEE
T ss_pred -------------------cEEEEEcccccCCcccc--C--CccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccc
Confidence 34444444332222221 1 12568899999999999998 789999999987754321
Q ss_pred -EEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCC-----eEEEEEEEEe
Q psy2776 555 -CRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGS-----TSLDLSLQVL 599 (803)
Q Consensus 555 -~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-----~s~s~~l~V~ 599 (803)
..... ......|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 146 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 146 NSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred cccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 11111 223589999999999999999999998662 2556666664
No 206
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.77 E-value=4.3e-19 Score=175.60 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=122.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|+ |..+. ...++.+........|.|.+++.+|+|.|+|.
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 87 (212)
T 1nfd_E 8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL 87 (212)
T ss_dssp EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred eEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence 57789999999999999988889999985 33321 13556665555678999999999999999999
Q ss_pred EEcCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeee
Q psy2776 583 ATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVA 659 (803)
Q Consensus 583 a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~ 659 (803)
|.|..+.. .....|.|...+
T Consensus 88 ~~n~~~~~~~~~~~~~l~V~~~~--------------------------------------------------------- 110 (212)
T 1nfd_E 88 SSYGDNNDLVFGSGTQLTVLRGP--------------------------------------------------------- 110 (212)
T ss_dssp EEETTTTEEEECCCEEEEEECCC---------------------------------------------------------
T ss_pred EEcccCcccccCCceEEEEccCC---------------------------------------------------------
Confidence 99732221 122334442211
Q ss_pred eeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeE-EEeeC----ceEEEEE
Q psy2776 660 LATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR-EIFDG----ENIILEL 732 (803)
Q Consensus 660 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~-~~~~~----~~~~L~i 732 (803)
..+|.+...+....+.+|+.++|.|.+.|. |+ +.+.|+++|.++..+.... ...++ ....|.|
T Consensus 111 ----------~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i 180 (212)
T 1nfd_E 111 ----------KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSL 180 (212)
T ss_dssp ----------CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCE
T ss_pred ----------CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEE
Confidence 125555554444445679999999999988 55 7999999999986543211 01111 1245899
Q ss_pred ecCCCCCCceeEEEEEEccCcceee
Q psy2776 733 KEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
.++ ..+|+|.|+|.|.|..+....
T Consensus 181 ~~~-~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 181 TAD-QWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp EHH-HHHTCSCEEEEEECTTTTCCC
T ss_pred chh-hcCCCCeEEEEEEeCCceEEE
Confidence 999 689999999999999887544
No 207
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.77 E-value=1e-17 Score=173.73 Aligned_cols=191 Identities=13% Similarity=0.204 Sum_probs=131.5
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|++ ..+. ...++.+..+ .....|.|.+++.
T Consensus 35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 114 (282)
T 1qok_A 35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS 114 (282)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence 56789999999999999875 5889999964 1110 1245555442 3457999999999
Q ss_pred CcCeEEEEEEEcCCCC---e--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 574 ADTSTYTVTATNAAGS---T--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~---~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+|+|.|.|.|.|..|. . ...+.|.|...+... +
T Consensus 115 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~------------------------------------------~ 152 (282)
T 1qok_A 115 EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGS------------------------------------------G 152 (282)
T ss_dssp GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC------------------------------------------------
T ss_pred hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCccc------------------------------------------C
Confidence 9999999999998762 1 123456665432000 0
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEee--CCeecc------------
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFR--NNKPLL------------ 714 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~--~~~~l~------------ 714 (803)
.........++.+...+....+.+|++++|.|.+.+.| +.+.|+| +|..+.
T Consensus 153 --------------~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~ 217 (282)
T 1qok_A 153 --------------GGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASG 217 (282)
T ss_dssp -----------------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTT
T ss_pred --------------CccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCc
Confidence 00000001255666667778899999999999999999 8999999 555431
Q ss_pred CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEe
Q psy2776 715 SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765 (803)
Q Consensus 715 ~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 765 (803)
...++....++...+|.|.++ +.+|+|.|+|.|.|..+.. .....|.|..
T Consensus 218 ~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 218 VPARFSGSGSGTSYSLTISRM-EAEDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp CCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred ccCCeEEecCCCEEEEEEccC-ChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 245676666667789999999 7999999999999865432 3456677753
No 208
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=9.2e-18 Score=169.52 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=123.1
Q ss_pred ceEEeecceeEEEEEEcCcC----CCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP----RPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|++ .. +. ...++.+.......+|.|.+++.+|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 89 (240)
T 1moe_A 10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT 89 (240)
T ss_dssp EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEE
Confidence 57789999999999999998 7899999862 21 10 1245666555566799999999999999
Q ss_pred EEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 579 YTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 579 Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|+|.|.|..+. ....+.|.|...+
T Consensus 90 Y~C~~~n~~~~~~~~~~~l~V~~~~------------------------------------------------------- 114 (240)
T 1moe_A 90 YYCQQTNEDPYTFGGGTKLEIKGGG------------------------------------------------------- 114 (240)
T ss_dssp EEEEECSSSSCCBCCCEEEEECCCS-------------------------------------------------------
T ss_pred EEEEEccCCceeecCCEEEEEecCC-------------------------------------------------------
Confidence 99999998654 3344566664421
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeC--Ceecc-----------------CC
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKPLL-----------------SS 716 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~l~-----------------~~ 716 (803)
....++.++..+....+.+|++++|.|.+.|.|. +.+.|+|+ +..+. ..
T Consensus 115 ----------~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~ 184 (240)
T 1moe_A 115 ----------SGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQ 184 (240)
T ss_dssp ----------CCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGT
T ss_pred ----------CCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCcccc
Confidence 0001334455566678999999999999999874 58999996 22220 13
Q ss_pred CCeEEEee--CceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 717 PKKREIFD--GENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 717 ~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.++.+..+ ....+|.|.++ +.+|+|.|+|.|.+.
T Consensus 185 ~r~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 185 GKATITADTSSNTAYLQLTSL-TSEDTAVYYCAPFGY 220 (240)
T ss_dssp TTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEECST
T ss_pred ccEEEEEcccCCEEEEEECcC-CHHHCEEEEEEEEec
Confidence 45555543 45678999999 799999999999953
No 209
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.76 E-value=5.9e-18 Score=172.11 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=120.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCe-----ee---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGA-----EI---------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~-----~i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|+.. .+ ....++.+.......+|.|.++..+|+|.|.|.
T Consensus 13 ~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 92 (250)
T 3esu_F 13 SLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQ 92 (250)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEE
Confidence 5678899999999999999999999998531 11 112455555555667999999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|...+. ....+.+.....
T Consensus 93 ~~n~~~~~~~~~~~l~V~~~~~---------------------------------~~~~~~~~~~~~------------- 126 (250)
T 3esu_F 93 QGNTLPWTFGGGTKLEIRRGGG---------------------------------GSGGGGSGGGGS------------- 126 (250)
T ss_dssp ECSSSSCEECCCEEEEEC--------------------------------------------------------------
T ss_pred EeeCCCceECCCEEEEEECCCC---------------------------------cccccccccccc-------------
Confidence 99976542 2334566644210 000000000000
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceecc-----------------CCCCeE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL-----------------SSPKKR 720 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l~-----------------~~~~~~ 720 (803)
....++.++..+....+.+|++++|.|.+.|.| .+.+.|+++ +..+. ...++.
T Consensus 127 ------~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 200 (250)
T 3esu_F 127 ------GGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKAT 200 (250)
T ss_dssp --------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEE
T ss_pred ------cCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEE
Confidence 000133344455567789999999999999877 789999997 43321 124565
Q ss_pred EEee--CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 721 EIFD--GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 721 ~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+..+ ....+|.|.++ +.+|+|.|.|.|.|
T Consensus 201 ~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 201 LTADKSSSTAYMQLSSL-TSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEGGGTEEEEEECSC-CGGGCEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCC-CcccCEEEEEEEec
Confidence 5544 45678999999 79999999999998
No 210
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=170.75 Aligned_cols=193 Identities=11% Similarity=0.132 Sum_probs=131.6
Q ss_pred cccceEEeecceeEEEEEEcCc--CCCeeEEeeCC--eeec-----------------CCCcEEEEe--cCCeEEEEEee
Q psy2776 514 NLKSQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AEIT-----------------DSKACRIFI--DEETSTIAIYS 570 (803)
Q Consensus 514 ~~~~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~i~-----------------~~~~~~~~~--~~~~~~L~i~~ 570 (803)
......+.+|++++|.|.+.+. +.+.+.|+|.. ..+. ...++.+.. .....+|.|.+
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 91 (256)
T 3juy_B 12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 91 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence 3356889999999999999883 67889999742 1110 013555552 23457899999
Q ss_pred eccCcCeEEEEEEEcC------------CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeE
Q psy2776 571 VVRADTSTYTVTATNA------------AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYY 638 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~------------~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (803)
+..+|+|.|.|.|.|. .+.......|.|...+..
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~---------------------------------- 137 (256)
T 3juy_B 92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGG---------------------------------- 137 (256)
T ss_dssp CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC------------------------------------
T ss_pred CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccc----------------------------------
Confidence 9999999999999986 222334455666442200
Q ss_pred EEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC-CceEEeeC--Ceecc-
Q psy2776 639 FQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA-PSIVWFRN--NKPLL- 714 (803)
Q Consensus 639 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~~--~~~l~- 714 (803)
.. .........+|.+...+....+.+|++++|.|.+.+.|. +.+.|+|+ +..+.
T Consensus 138 --------~~--------------~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~ 195 (256)
T 3juy_B 138 --------SG--------------GGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRL 195 (256)
T ss_dssp ------------------------------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEE
T ss_pred --------cc--------------ccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEE
Confidence 00 000000011556777778889999999999999999887 89999983 22221
Q ss_pred -----------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEE
Q psy2776 715 -----------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTV 763 (803)
Q Consensus 715 -----------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 763 (803)
...++.+..++...+|.|.++ +.+|+|.|.|.|.|..+.. .....|.|
T Consensus 196 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~g~gt~l~V 255 (256)
T 3juy_B 196 VIHGVSNRASGISDRFSGSGSGTDFTLTITRV-EPEDFALYYCQVYGASSYTFGQGTKLER 255 (256)
T ss_dssp EEETTTEECTTCCTTEEEEEETTEEEEEESSC-CGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred EEEecCccCCccCCcEEEEccCCEEEEEECCC-CHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence 345677767777889999999 7999999999999965433 23344444
No 211
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.76 E-value=6.1e-18 Score=171.79 Aligned_cols=176 Identities=12% Similarity=0.178 Sum_probs=115.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-----eEEeeCCeeecCC--------CcE-------EEE---ecCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-----ISWMKNGAEITDS--------KAC-------RIF---IDEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-----v~W~~~g~~i~~~--------~~~-------~~~---~~~~~~~L~i~~v~~ 573 (803)
.+.+.+|+++.|.|.+.|.|.+. +.|+|++...... ... .+. ...+...|.|.+++.
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~ 91 (248)
T 3pv7_A 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL 91 (248)
T ss_dssp EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence 46788999999999999988876 9999974322110 000 000 011234699999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.|..+.....+.|.|..+
T Consensus 92 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~~---------------------------------------------------- 119 (248)
T 3pv7_A 92 EEAGEYRCEVVVTPLKAQGTVQLEVVAS---------------------------------------------------- 119 (248)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEBC----------------------------------------------------
T ss_pred HHCeEEEEEEEeCCccceeEEEEEEecC----------------------------------------------------
Confidence 9999999999999888888888888663
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCC-------eEEEe-
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPK-------KREIF- 723 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~-------~~~~~- 723 (803)
|.+...+. ..+..|+.+.|.|.+.| .|.| .+.|+++|.++..... .....
T Consensus 120 -------------------P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 179 (248)
T 3pv7_A 120 -------------------PASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKN 179 (248)
T ss_dssp -------------------CEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEEC
T ss_pred -------------------CceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEEC
Confidence 33333322 33446788889999999 7998 9999999975432210 01111
Q ss_pred -eCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 724 -DGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 724 -~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
++. ...|.|... ..+|.|.|+|.|.|..+.......+.+.|
T Consensus 180 ~~~~~~~~s~L~i~~~-~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 180 MDGTFNVTSCLKLNSS-QEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp TTSCEEEEEEEECC---CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCCCEEEEEEEEEcCc-cccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 111 356888888 68899999999999999865555555444
No 212
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.76 E-value=9.9e-19 Score=167.26 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=87.0
Q ss_pred EEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCC
Q psy2776 425 FTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ 504 (803)
Q Consensus 425 L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~ 504 (803)
|.|.+++.+|+|.|+|.|.|..|....+. .+.|.|..++.
T Consensus 63 L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~----------------------------------------~~~l~V~~~~~ 102 (176)
T 1hng_A 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNK----------------------------------------ALDLRILEMVS 102 (176)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCCEEEEE----------------------------------------EEEEEEECCCC
T ss_pred EEEcccccccCEEEEEEEEeCCCCEEEEE----------------------------------------EEEEEEeCCCC
Confidence 99999999999999999999888762211 44555555544
Q ss_pred CccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEE
Q psy2776 505 QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTAT 584 (803)
Q Consensus 505 ~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~ 584 (803)
.|.+. ..+..+.|.|.+.|.|+|.+.|+|+|..+..+.+ +.|.++..+|+|.|+|.|.
T Consensus 103 ~p~i~-----------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~ 160 (176)
T 1hng_A 103 KPMIY-----------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAV 160 (176)
T ss_dssp CCEEE-----------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEE
T ss_pred CCEEE-----------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEE
Confidence 33221 2345699999999999999999999988765432 4555888999999999999
Q ss_pred cCCCCeEEEEEEEE
Q psy2776 585 NAAGSTSLDLSLQV 598 (803)
Q Consensus 585 n~~g~~s~s~~l~V 598 (803)
|..|..+....|.+
T Consensus 161 N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 161 NRVSQESEMEVVNC 174 (176)
T ss_dssp ETTEEEEEEECCCC
T ss_pred ecCCCceecccccC
Confidence 99999888877655
No 213
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.76 E-value=1.9e-18 Score=172.13 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=119.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCe---eEEeeCCeeecC----------------CCcEEEE-------ecCCeEEEEEee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE---ISWMKNGAEITD----------------SKACRIF-------IDEETSTIAIYS 570 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~---v~W~~~g~~i~~----------------~~~~~~~-------~~~~~~~L~i~~ 570 (803)
...+.+|++++|.|.+.+.|.+. +.|+|++..+.. ..+.... ......+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 36678899999999999887764 789998654321 0111110 112346799999
Q ss_pred eccCcCeEEEEEEEcCCCCeEEEE-EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 571 VVRADTSTYTVTATNAAGSTSLDL-SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~s~s~-~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
++.+|+|.|+|.|.|..|...... .+.+..
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 120 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIA------------------------------------------------- 120 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-------------------------------------------------
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeec-------------------------------------------------
Confidence 999999999999999877654433 333322
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCc--
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGE-- 726 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~-- 726 (803)
+|.+...+.......++.+.+.|.+ .+.|++.+.|++++..+..........++.
T Consensus 121 ----------------------~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
T 4fmk_A 121 ----------------------QPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVT 178 (225)
T ss_dssp ----------------------CCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEE
T ss_pred ----------------------CCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEE
Confidence 2333333344455667777777766 456888999999876654332222112222
Q ss_pred -eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 727 -NIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 727 -~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.+.|.|.++ ..+|+|.|+|+|+|..|.....+.++|.|
T Consensus 179 ~~s~L~i~~~-~~~d~g~YtC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 179 IISRYSLVPV-GRADGVKVTCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp EEEEEEECCC-GGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred EEEEEEEeeC-CHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence 346999999 78999999999999999887766666544
No 214
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.76 E-value=1.5e-17 Score=169.89 Aligned_cols=193 Identities=10% Similarity=0.153 Sum_probs=131.8
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. ..+. ...++.+..+ .....|.|.++..
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 35688999999999999876 6789998742 1110 1234554432 3457899999999
Q ss_pred CcCeEEEEEEEcC----CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 574 ADTSTYTVTATNA----AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 574 ~dsG~Y~C~a~n~----~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|+|.|.|.|.|. .+.......|.|...+ +.
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~---------------------------------------------~~ 125 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGG---------------------------------------------GG 125 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC-------------------------------------------------
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCC---------------------------------------------cc
Confidence 9999999999987 2333344566665421 00
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeC--Ceecc------------C
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRN--NKPLL------------S 715 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--~~~l~------------~ 715 (803)
... +. .......+|.+...+....+.+|++++|.|.+.+.|.+.+.|+|+ +..+. .
T Consensus 126 ~~~-----~~-----~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~ 195 (256)
T 3umt_A 126 SGG-----GG-----SGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGV 195 (256)
T ss_dssp ---------------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTS
T ss_pred ccC-----cc-----cCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCcc
Confidence 000 00 000011156677777778899999999999999999999999994 22211 2
Q ss_pred CCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcce-eeeEEEEEEe
Q psy2776 716 SPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSA-THGARVTVDV 765 (803)
Q Consensus 716 ~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~ 765 (803)
..++.....+...+|.|.++ +.+|+|.|.|.|.|..+.. .....|.|+.
T Consensus 196 ~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 196 PKRFSGSRSGSDYSLTISSL-ESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp CTTEEEEEETTEEEEEECSC-CGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CCCEEEecCCCEEEEEECCC-ChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 35676666777889999999 7999999999999976544 3456677753
No 215
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.76 E-value=6.3e-18 Score=163.70 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=115.9
Q ss_pred eeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCC
Q psy2776 317 LVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGS 396 (803)
Q Consensus 317 ~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~ 396 (803)
.+.+|++++|.|.+..+.+.+.|+|+|..+..... .
T Consensus 14 ~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~------~-------------------------------------- 49 (188)
T 1oll_A 14 MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP------K-------------------------------------- 49 (188)
T ss_dssp EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC------S--------------------------------------
T ss_pred cCCCCCCEEEEEecCCCCCEEEEEECCCccccccc------c--------------------------------------
Confidence 56789999999999545678999999877642100 0
Q ss_pred CceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCc
Q psy2776 397 GGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPP 476 (803)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 476 (803)
.........|.|.+++.+|+|.|+|.+.|..+....+.
T Consensus 50 -------------------~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~----------------------- 87 (188)
T 1oll_A 50 -------------------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN----------------------- 87 (188)
T ss_dssp -------------------SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCC-----------------------
T ss_pred -------------------cCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCC-----------------------
Confidence 00011234688999999999999999988655433221
Q ss_pred hhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE
Q psy2776 477 MKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR 556 (803)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~ 556 (803)
.+.|.|...+..|.+. ..+ ...+.+|+.++|.|.+.+ +++.+.|+|+|..+.. .
T Consensus 88 -----------------~~~l~V~~~~~~p~i~--~~p--~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~----~ 141 (188)
T 1oll_A 88 -----------------LLDLVVTEMYDTPTLS--VHP--GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV----Q 141 (188)
T ss_dssp -----------------CEEEEEESCSCCCEEE--EES--CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE----E
T ss_pred -----------------ceEEEecccCCCCeEE--ECC--CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc----c
Confidence 2333343322122221 111 346789999999999876 5578999999976653 1
Q ss_pred EEecCCeEEEEEeeeccCcCeEEEEEEEcCC---CCeEEEEEEEEe
Q psy2776 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAA---GSTSLDLSLQVL 599 (803)
Q Consensus 557 ~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~---g~~s~s~~l~V~ 599 (803)
.........|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.
T Consensus 142 ~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 142 RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred ccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 2234467899999999999999999999875 234556667664
No 216
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.76 E-value=6.6e-18 Score=170.19 Aligned_cols=171 Identities=9% Similarity=0.050 Sum_probs=123.6
Q ss_pred EEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC--CeEEEEEE
Q psy2776 519 RLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG--STSLDLSL 596 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g--~~s~s~~l 596 (803)
.+.+|++++|.|.+.+ +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+.|..+ ..+..+.|
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L 94 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 94 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEE
Confidence 6889999999999875 4568999999987642100 001123467899999999999999999988643 23455666
Q ss_pred EEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeE
Q psy2776 597 QVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFI 676 (803)
Q Consensus 597 ~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~ 676 (803)
.|.+.. .+|.+.
T Consensus 95 ~V~~~~--------------------------------------------------------------------~~P~i~ 106 (242)
T 1p6f_A 95 VVTEMY--------------------------------------------------------------------DTPTLS 106 (242)
T ss_dssp EEECCS--------------------------------------------------------------------CCCEEE
T ss_pred Eeeccc--------------------------------------------------------------------CCCceE
Confidence 664311 145555
Q ss_pred eccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccC---c
Q psy2776 677 ERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNEL---G 753 (803)
Q Consensus 677 ~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~---G 753 (803)
..+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.. ..........|.|.++ +.+|+|.|+|.|.|.. .
T Consensus 107 ~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v-~~~d~G~Y~C~a~n~~~~~s 179 (242)
T 1p6f_A 107 VHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPV-TTAHRGTYRCFGSYNNHAWS 179 (242)
T ss_dssp EES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEEECSSEEEEEEEEC-CGGGCEEEEEEEEEETTEEC
T ss_pred ccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----cccCCCceEEEEeCCC-ccccCEEEEEEEECCCCccc
Confidence 443 4568899999999998754 569999999987643 1223455678999999 7899999999999974 3
Q ss_pred ceeeeEEEEEEee
Q psy2776 754 SATHGARVTVDVE 766 (803)
Q Consensus 754 ~~~~~~~l~V~~~ 766 (803)
..+..+.|.|.+.
T Consensus 180 ~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 180 FPSEPVKLLVTGD 192 (242)
T ss_dssp CCCCCEEEEEEC-
T ss_pred CCCCCEEEEEecc
Confidence 4466778888653
No 217
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.76 E-value=1.1e-17 Score=164.67 Aligned_cols=164 Identities=13% Similarity=0.199 Sum_probs=118.0
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--------------------eEEEecCeeEEEEecCCCCcce
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--------------------NITYENNVARFTVVNCSESSEG 210 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--------------------~~~~~~~~~~L~i~~v~~~d~G 210 (803)
+....+.+|+.+.|.|...+.+.+.+.|++++...... +.... ....|.|.+++.+|+|
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-SNGSLLFQMITMKDMG 84 (208)
T ss_dssp EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-TTSCEEECSCCGGGCE
T ss_pred CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-cCCeEEEccccccCCe
Confidence 34467889999999999888888899999976432211 11111 1247999999999999
Q ss_pred EEEEEEEcCC-cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 211 RYTCKATNEA-GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 211 ~Y~C~a~n~~-g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|+|.+.|.. +.....+.|.|...+..+
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p--------------------------------------------------- 113 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPVTQP--------------------------------------------------- 113 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCCCCC---------------------------------------------------
T ss_pred EEEEEEEcccCceeEEEEEEEeccCCCCC---------------------------------------------------
Confidence 9999999985 445556667776442100
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeec
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRV 368 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 368 (803)
.+... +. . +.+|+.+.|.|.+ +.| +.+.|+++|..+..+.++.+..+
T Consensus 114 -----------------~i~~~-~~-~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~----------- 161 (208)
T 3r4d_A 114 -----------------FLQVT-NT-T-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQN----------- 161 (208)
T ss_dssp -----------------EEEES-CS-S-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETT-----------
T ss_pred -----------------EEecC-Cc-e-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCC-----------
Confidence 00000 11 1 5679999999999 554 89999999998876555433322
Q ss_pred CCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCcee
Q psy2776 369 TQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGT 448 (803)
Q Consensus 369 ~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~ 448 (803)
..+|.|.++..+|+|.|+|.|.|..|.
T Consensus 162 -----------------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 188 (208)
T 3r4d_A 162 -----------------------------------------------------NSILRIDPIKREDAGEYQCEISNPVSV 188 (208)
T ss_dssp -----------------------------------------------------TTEEEESSCCGGGCEEEEEEEECTTCC
T ss_pred -----------------------------------------------------CCEEEEeccCHHhCeEEEEEEecCCCc
Confidence 235888889999999999999999998
Q ss_pred eee
Q psy2776 449 AET 451 (803)
Q Consensus 449 ~~~ 451 (803)
..+
T Consensus 189 ~~s 191 (208)
T 3r4d_A 189 RRS 191 (208)
T ss_dssp EEC
T ss_pred ccC
Confidence 776
No 218
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.76 E-value=6.5e-18 Score=168.97 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=91.1
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|+|.|.|..|..... +.+.+
T Consensus 80 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~------------------------------------------v~~~~ 117 (226)
T 4f80_A 80 AGKAALRIHNVTASDSGKYLCYFQDGDFYEKAL------------------------------------------VELKV 117 (226)
T ss_dssp GTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE------------------------------------------EEEEE
T ss_pred CCeEEEEEeeCchHHCeeEEEEEECCCcEEEEE------------------------------------------EEEee
Confidence 456789999999999999999999988766551 22222
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCCeeEEeeCCeeecCCCcEEEEecCCe--EEEEEeeeccCcC
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRPEISWMKNGAEITDSKACRIFIDEET--STIAIYSVVRADT 576 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~ds 576 (803)
..++..+. ....+.+|+.+.|.|.+.| .|.|.++|+|++..+.......+..+.++ ..+.+.++..+|+
T Consensus 118 ~~~~~~~~--------~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~ 189 (226)
T 4f80_A 118 AALGSDLH--------VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSG 189 (226)
T ss_dssp EBCCCCCE--------EEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC---
T ss_pred ccceeccc--------ceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcC
Confidence 22211111 2456788999999999988 59999999996644433322222222222 3455667889999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeee
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~ 601 (803)
|.|+|.|+|..|....++.|.|.++
T Consensus 190 G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 190 EGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp -CEEEEEEETTTTEEEEEEECCCTT
T ss_pred cEEEEEEEeCCCCeEEEEEEEECCC
Confidence 9999999999999999999988664
No 219
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.76 E-value=3.3e-18 Score=169.79 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=119.2
Q ss_pred eeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecC
Q psy2776 316 TLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFG 395 (803)
Q Consensus 316 ~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~ 395 (803)
..+.+|++++|.|.+..+.+.+.|+|+|..+...... ..
T Consensus 18 ~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~~~-~~---------------------------------------- 56 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-RL---------------------------------------- 56 (218)
T ss_dssp SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEECSE-EC----------------------------------------
T ss_pred CccCCCCCEEEEEEcCCCCCEEEEEECCCcccccccc-cC----------------------------------------
Confidence 3677899999999994478899999998766432110 00
Q ss_pred CCceeeeeeecCcceeeeeeeEEecCee--EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCccc
Q psy2776 396 SGGWWFESKYKDDSLIKGRNITYENNVA--RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRV 473 (803)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 473 (803)
...+.. .|.|.+++.+|+|.|+|.+.|..|....+.
T Consensus 57 ----------------------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~-------------------- 94 (218)
T 1uct_A 57 ----------------------KFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD-------------------- 94 (218)
T ss_dssp ----------------------C----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECC--------------------
T ss_pred ----------------------CCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecC--------------------
Confidence 001122 588999999999999999999765433321
Q ss_pred CCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC
Q psy2776 474 KPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK 553 (803)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~ 553 (803)
.+.|.|...+..|.+. ..+ ...+.+|+.++|.|...+.|.+.+.|+|+|..+...
T Consensus 95 --------------------~~~l~V~~~~~~P~i~--~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~- 149 (218)
T 1uct_A 95 --------------------TLELVVTGLYGKPFLS--ADR--GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ- 149 (218)
T ss_dssp --------------------CEEEEEECSSCCCEEE--ESS--CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-
T ss_pred --------------------CEEEEEcCcccCCEEE--eCC--CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-
Confidence 2334443322222221 111 346789999999997777788999999999877542
Q ss_pred cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-----CeEEEEEEEEeeeE
Q psy2776 554 ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-----STSLDLSLQVLGYI 602 (803)
Q Consensus 554 ~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-----~~s~s~~l~V~~~p 602 (803)
. ........|.|.+++.+|+|.|+|.|.|... ..+..+.|.|.+.+
T Consensus 150 -~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 150 -H--QSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp -E--EECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred -c--cCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 1 1234568999999999999999999998642 34566788887643
No 220
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.75 E-value=6.3e-18 Score=168.56 Aligned_cols=177 Identities=10% Similarity=0.107 Sum_probs=121.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec----------------CCCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT----------------DSKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~----------------~~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|+.+.|.|.+.+.| .+.+.|+|++ .. +. ...++.+..+ .+...|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 45688999999999999875 6789999853 21 10 0135555433 34679999999
Q ss_pred ccCcCeEEEEEEEcCCC-----CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 572 VRADTSTYTVTATNAAG-----STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g-----~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
+.+|+|.|.|.|.|..| .......|.|...
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~--------------------------------------------- 123 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAA--------------------------------------------- 123 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSS---------------------------------------------
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccC---------------------------------------------
Confidence 99999999999998764 2223345555331
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEee
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFD 724 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~ 724 (803)
+..+|.+........+.+|+.++|.|.+.|. |.| .|.|+++|..+..........+
T Consensus 124 ----------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~ 181 (222)
T 1q9r_B 124 ----------------------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQS 181 (222)
T ss_dssp ----------------------CCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEET
T ss_pred ----------------------CCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccC
Confidence 1124555443333346689999999999996 888 9999999987642211111122
Q ss_pred Cc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 725 GE---NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 725 ~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
+. ...|.|.++ ..+| |.|+|.|.|..|.......|+
T Consensus 182 ~~~~~~s~L~i~~~-~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 182 DLYTLSSSVTVPSS-TWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp TEEEEEEEEEEETT-TTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred CcEEEEEEEEECch-hcCC-CeEEEEEEccCCCCcEEEecc
Confidence 21 246899988 6778 999999999999876555443
No 221
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.75 E-value=1.2e-17 Score=168.52 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=117.2
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceee---------------cCCCcEEEEe-cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEI---------------TDSKACRIFI-DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i---------------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++++|.|. .+.|.+.+.|+|+ +..+ ....++.+.. .....+|.|.+++.+|+|.
T Consensus 9 ~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~ 87 (238)
T 2p1y_A 9 NKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV 87 (238)
T ss_dssp EEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred ceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence 577899999999999 7788899999995 2111 0123455443 2345689999999999999
Q ss_pred EEEEEEcCCCCeE-----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 579 YTVTATNAAGSTS-----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 579 Y~C~a~n~~g~~s-----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
|.|.|.|..|... ....|.|...+.
T Consensus 88 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~-------------------------------------------------- 117 (238)
T 2p1y_A 88 YFCASGDLGQTNERLFFGHGTKLSVLGSAD-------------------------------------------------- 117 (238)
T ss_dssp EEEEEEC------CEEECCCEEEEEECCCH--------------------------------------------------
T ss_pred EEEEEEeCCCccccceeCCCeEEEEeccCC--------------------------------------------------
Confidence 9999999865311 223444433110
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCe--e---c---------cCCCCe
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK--P---L---------LSSPKK 719 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~--~---l---------~~~~~~ 719 (803)
....+.....+.+...+....+.+|++++|.|.+.|.|.+.+.|+|++. . + ....++
T Consensus 118 ---------~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~ 188 (238)
T 2p1y_A 118 ---------DAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRF 188 (238)
T ss_dssp ---------HHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTE
T ss_pred ---------CCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCce
Confidence 0000000001245555667789999999999999999999999999641 1 1 123455
Q ss_pred EEEe--eCceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 720 REIF--DGENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 720 ~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.+.. .....+|.|.++ +.+|+|.|+|.|.|..
T Consensus 189 ~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 189 TIFFNKREKKLSLHIADS-QPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEETTTTEEEEEETTC-CGGGCEEEEEEEEETT
T ss_pred EEEecCCCCeEEEEEcCC-CHHHCEEEEEEEeeCC
Confidence 5442 344678999999 7999999999999984
No 222
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.75 E-value=3.6e-18 Score=163.46 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=63.4
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCC-eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTP-DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
.+|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 75 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLNIVNAKFEDSGEYKCQHQQVNE 75 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------CSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-------CceEEEEeccceecCEEEEEEcCCccc
Confidence 46677777888889999999999999988875 6999999987753 346899999999999999999998654
Q ss_pred CeeeEEEEEEe
Q psy2776 222 TAETSCTLLVQ 232 (803)
Q Consensus 222 ~~~~s~~l~V~ 232 (803)
. ..+.|.|.
T Consensus 76 s--~~~~l~V~ 84 (176)
T 1f2q_A 76 S--EPVYLEVF 84 (176)
T ss_dssp C--CCEEEEEE
T ss_pred c--ccEEEEEe
Confidence 3 34555555
No 223
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.75 E-value=1.7e-17 Score=167.82 Aligned_cols=181 Identities=14% Similarity=0.083 Sum_probs=122.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.+.+.|.+.+.|+|+. .. +. ...++.+.......+|.|.++..+|+|.|.|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (242)
T 2znx_A 10 TLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ 89 (242)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence 577899999999999999999999999853 11 11 13456655455667999999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|..++..
T Consensus 90 ~~n~~~~~~~~~~~L~V~~~~~~--------------------------------------------------------- 112 (242)
T 2znx_A 90 QSNSXPYTFGGGTKLEITGGGGS--------------------------------------------------------- 112 (242)
T ss_dssp ECSSSSCEECCCEEEEEC--------------------------------------------------------------
T ss_pred EecCCceEECCCEEEEEcCCCCC---------------------------------------------------------
Confidence 99985432 23456666553300
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceecc----------------CCCCeEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPLL----------------SSPKKRE 721 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l~----------------~~~~~~~ 721 (803)
.........++.++..+....+.+|++++|.|.+.|.| .+.+.|+++ +..+. ...++.+
T Consensus 113 -~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~ 191 (242)
T 2znx_A 113 -GGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISI 191 (242)
T ss_dssp -----------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEE
T ss_pred -CcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEE
Confidence 00000001123233334445689999999999999886 478999995 22221 1445655
Q ss_pred Eee--CceEEEEEecCCCCCCceeEEEEEEcc--Cccee
Q psy2776 722 IFD--GENIILELKEADSETDAGDYKVVATNE--LGSAT 756 (803)
Q Consensus 722 ~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~--~G~~~ 756 (803)
..+ +...+|.|.++ +.+|+|.|+|.|.|. +|..+
T Consensus 192 ~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 192 TRDTSKNQYYLDLNSV-TTEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp EEETTTTEEEEEECSC-CGGGCEEEEEEETTSSCBCCCE
T ss_pred EecCCCCEEEEEECCC-CcCcCEEEEEeccCCcccCCCe
Confidence 543 35678999999 799999999999994 56654
No 224
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.75 E-value=7.9e-18 Score=166.23 Aligned_cols=172 Identities=12% Similarity=0.113 Sum_probs=117.9
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeC--Ceeec----------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKN--GAEIT----------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|+ |..+. ...++.+..+ .+...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 88 (210)
T 3d9a_H 9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE 88 (210)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence 45788999999999999875 378999985 22211 1245555432 24569999999999
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcc
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEAT 654 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~ 654 (803)
|+|.|.|.|.|.. .......|.|...
T Consensus 89 D~G~Y~C~~~~~~-~~~~~~~l~V~~~----------------------------------------------------- 114 (210)
T 3d9a_H 89 DTATYYCANWDGD-YWGQGTLVTVSAA----------------------------------------------------- 114 (210)
T ss_dssp GCEEEEEEETTSS-CBCCCEEEEECCC-----------------------------------------------------
T ss_pred cCEEEEEEEecCc-ccccceEEEeccC-----------------------------------------------------
Confidence 9999999999863 2222345555321
Q ss_pred ceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeC---ceEE
Q psy2776 655 TELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG---ENII 729 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~---~~~~ 729 (803)
...+|.+...+....+.+|+.++|.|.+.|. |.| .+.|++++..+.......+..++ ....
T Consensus 115 --------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~ 180 (210)
T 3d9a_H 115 --------------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS 180 (210)
T ss_dssp --------------CCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEE
T ss_pred --------------CCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEE
Confidence 1124555544333456789999999999997 888 99999998865311111111112 2356
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
|.|..+ ..+| |.|+|.|.|..|.....
T Consensus 181 L~i~~~-~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 181 VTVPSS-TWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp EEEEGG-GTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEcHH-HcCC-CcEEEEEEeCCCCcccc
Confidence 999998 5556 99999999999987643
No 225
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.75 E-value=1.8e-18 Score=175.78 Aligned_cols=139 Identities=9% Similarity=0.159 Sum_probs=95.9
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+..+...... ....+.|.|.
T Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~-------------------------------------~~~~~~l~V~ 130 (250)
T 2fbo_J 88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL-------------------------------------DAKSVVLKVT 130 (250)
T ss_dssp TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGE-------------------------------------EEEEEEEEET
T ss_pred CcceEEEeeCChhhCeEEEEEeccCccCCcccc-------------------------------------cceeEEEEEe
Confidence 345799999999999999999999776432100 0014556666
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEE--EE-------------------e
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACR--IF-------------------I 559 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~--~~-------------------~ 559 (803)
.+|..+.+.+ .......+.+|+.+.|.|.+.|.|.|.+.|+|++..+....... .. .
T Consensus 131 ~~~~~~~~~~--~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (250)
T 2fbo_J 131 GHTPSNNVHV--STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRAS 208 (250)
T ss_dssp TTSCCSCCEE--CCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEE
T ss_pred ccCCCCeEEE--ecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccc
Confidence 6543333332 22234666779999999999999999999999998775532110 00 0
Q ss_pred cCCeEEEEEeeeccCcCeEEEEEEEcCCC---CeEEEEEEEE
Q psy2776 560 DEETSTIAIYSVVRADTSTYTVTATNAAG---STSLDLSLQV 598 (803)
Q Consensus 560 ~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g---~~s~s~~l~V 598 (803)
......|.|.++..+|+|.|+|.|.|..| ....++.|.|
T Consensus 209 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 209 FSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp EETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence 00225899999999999999999999544 4555555543
No 226
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.75 E-value=3.2e-18 Score=175.99 Aligned_cols=173 Identities=12% Similarity=0.108 Sum_probs=121.8
Q ss_pred ceEEeecceeEEEEEEc---CcCCCeeEEeeCCeeecCC------------------CcEEEE--ecCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYF---GFPRPEISWMKNGAEITDS------------------KACRIF--IDEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~---g~p~~~v~W~~~g~~i~~~------------------~~~~~~--~~~~~~~L~i~~v~~ 573 (803)
...+.+|+.+.|.|.+. +.|.+.+.|+|++...... .+..+. ......+|.|.+++.
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 93 (268)
T 3mj6_A 14 QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK 93 (268)
T ss_dssp EEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCG
T ss_pred ceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCH
Confidence 57789999999999988 6777889999966432211 222221 112337899999999
Q ss_pred CcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 574 ADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
+|+|.|+|.|.|..+.......+.+...+
T Consensus 94 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~--------------------------------------------------- 122 (268)
T 3mj6_A 94 ADEGIYTCEIRLKNESMVMKKPVELWVLP--------------------------------------------------- 122 (268)
T ss_dssp GGCEEEEEEEEETTCCCEEEEEEEEEEEC---------------------------------------------------
T ss_pred hHCEEEEEEEEecCCcceEEEEEEEEEec---------------------------------------------------
Confidence 99999999999876665444333332211
Q ss_pred cceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE---eecCCCceEEeeCCeeccC---------------
Q psy2776 654 TTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV---KASPAPSIVWFRNNKPLLS--------------- 715 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~---~g~p~~~v~W~~~~~~l~~--------------- 715 (803)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++.....
T Consensus 123 -----------------------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 179 (268)
T 3mj6_A 123 -----------------------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179 (268)
T ss_dssp -----------------------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCE
T ss_pred -----------------------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccc
Confidence 01225678899999999999 6779999999994321110
Q ss_pred ---CC----CeEEEe--eCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 716 ---SP----KKREIF--DGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 716 ---~~----~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
+. +..+.. ......|.|.++ +.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 180 ~~~~~~~~~r~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTV-KESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp EECSSTTTTTEEECSCGGGTBCCEEECSC-CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccccccccceEeeccCCCCeEEEEECcC-ChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 01 111110 123557999999 7999999999999999999998888884
No 227
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.75 E-value=2.2e-18 Score=176.89 Aligned_cols=188 Identities=10% Similarity=0.081 Sum_probs=65.2
Q ss_pred eeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCC-C--eeEEeeCCeeecCCCcEEEEecCCeEEEEEee
Q psy2776 494 TTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR-P--EISWMKNGAEITDSKACRIFIDEETSTIAIYS 570 (803)
Q Consensus 494 ~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~-~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~ 570 (803)
.+.|.|..+|..+.+... ...+.+|+.++|+|.+.|.++ . +|+|+|+++.+..... .......+|.+..
T Consensus 77 ~v~l~V~~~P~~v~I~~~-----~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~ 148 (291)
T 1mq8_A 77 KTFLTVYWTPERVELAPL-----PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLV 148 (291)
T ss_dssp ECEEEECBCCSCCCBCCC-----CSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCC
T ss_pred EEEEEEecCCCCCEEecC-----CccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeee
Confidence 667888888887766532 133788999999999988654 3 5899999988864321 1112234566666
Q ss_pred eccCcCeEEEEEEEcCCCC--------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEE
Q psy2776 571 VVRADTSTYTVTATNAAGS--------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~--------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (803)
...+|.+.|+|.|.|..+. .+....|.|..+|
T Consensus 149 ~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P---------------------------------------- 188 (291)
T 1mq8_A 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP---------------------------------------- 188 (291)
T ss_dssp SSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------
T ss_pred eeccCCceEEEEEEecCCccCCccccccccceEEEEEecC----------------------------------------
Confidence 6666667999999987552 2333455554432
Q ss_pred EecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC---ceEEeeCCeeccCCCCe
Q psy2776 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP---SIVWFRNNKPLLSSPKK 719 (803)
Q Consensus 643 a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~~~~l~~~~~~ 719 (803)
...+.+.. + ..+.+|+.++|+|.+.|.|++ .+.|++||..+....
T Consensus 189 ---------------------------~~~~~~~~-p--~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~-- 236 (291)
T 1mq8_A 189 ---------------------------ATPPQLVS-P--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-- 236 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------CCCceecC-C--cCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee--
Confidence 01122222 1 257789999999999998554 599999999986532
Q ss_pred EEEeeCceEEEEEecCCCCCC--ceeEEEEEEccCcceeeeEEEEE
Q psy2776 720 REIFDGENIILELKEADSETD--AGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 720 ~~~~~~~~~~L~i~~v~~~~D--~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
..+++..++.......++| .+.|+|.|.|..........|.|
T Consensus 237 --~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v 280 (291)
T 1mq8_A 237 --TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280 (291)
T ss_dssp ----------------------------------------------
T ss_pred --eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEE
Confidence 2234433322221102334 56666777764444445555555
No 228
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.75 E-value=2.9e-17 Score=163.52 Aligned_cols=133 Identities=12% Similarity=0.215 Sum_probs=95.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+ .+.... .+.|.|.
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~------------------------------------------~~~l~V~ 114 (222)
T 3sbw_C 78 GNAALQITDVKLQDAGVYRCMISY-GGADYK------------------------------------------RITVKVN 114 (222)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEES-SSEEEE------------------------------------------EEEEEEE
T ss_pred CEEEEEEcCcccccCeEEEEEEEe-CCCcee------------------------------------------EEEEEEE
Confidence 456899999999999999999999 443333 4455566
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeC-CeeecCCCcEEEEecCCe--EEEEEeeeccCcCe
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKN-GAEITDSKACRIFIDEET--STIAIYSVVRADTS 577 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~--~~L~i~~v~~~dsG 577 (803)
.+|..+.... ...+.+|+.+.|.|.+.|.|.|.+.|+++ |..+............++ ..+.+..+..+|.|
T Consensus 115 ~~~~~~~~~~------~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g 188 (222)
T 3sbw_C 115 APYNKINQRI------LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188 (222)
T ss_dssp BCCCCCEEEE------EEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTC
T ss_pred CCCCCCCcee------eeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCc
Confidence 6665543322 12567899999999999999999999998 665554332222221111 22333356679999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 578 TYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 578 ~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.|+|.|.|..|....++.|.|...|
T Consensus 189 ~Y~C~a~n~~g~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 189 IFYCTFRRLDPEENHTAELVIPELP 213 (222)
T ss_dssp EEEEEEEETTTTEEEEEEEECCCC-
T ss_pred EEEEEEEeCccceeeEEEEEecCCc
Confidence 9999999999999999999998665
No 229
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.75 E-value=7.9e-18 Score=169.54 Aligned_cols=174 Identities=15% Similarity=0.094 Sum_probs=123.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee------------ecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE------------ITDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~------------i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++ .. .....++.+........|.|.+++.+|+|.|+|.
T Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 112 (237)
T 3sob_L 33 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ 112 (237)
T ss_dssp EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEe
Confidence 577899999999999999988999999842 11 0113466665556678999999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|...
T Consensus 113 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 132 (237)
T 3sob_L 113 QSYTTPPTFGQGTKVEIKRT------------------------------------------------------------ 132 (237)
T ss_dssp ECSSSSCEECCCEEEEEECC------------------------------------------------------------
T ss_pred eccCCceEEcCcEEEEEecC------------------------------------------------------------
Confidence 99876532 22334444321
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCC-C-eEEE--eeCc---eEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSP-K-KREI--FDGE---NIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~-~-~~~~--~~~~---~~~L~i 732 (803)
..+|.+...+....+.+|+.++|.|.+.|. | .+.+.|+++|..+..+. . .... .++. ...|.|
T Consensus 133 --------~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i 204 (237)
T 3sob_L 133 --------VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTL 204 (237)
T ss_dssp --------CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEE
T ss_pred --------CCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEE
Confidence 125666555444455568999999999985 5 57999999999886531 0 0001 1111 356889
Q ss_pred ecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 733 KEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
..+ ..+|+|.|+|.|.|.........
T Consensus 205 ~~~-~~~d~g~Y~C~a~n~~~~~~~~~ 230 (237)
T 3sob_L 205 SKA-DYEKHKVYACEVTHQGLSSPVTK 230 (237)
T ss_dssp EHH-HHTTCCEEEEEEECTTCSSCEEE
T ss_pred cHH-HccCCCcEEEEEeeCCCCCceee
Confidence 998 67899999999999987654433
No 230
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.75 E-value=8.3e-18 Score=166.39 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=121.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e---------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I---------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i---------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|.+ .. + ....++.+........|.|.+++.+|+|.|+|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 89 (213)
T 3r06_A 10 SLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQ 89 (213)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred EEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEe
Confidence 577899999999999999999999999842 11 0 013456655555678999999999999999999
Q ss_pred EEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+. ......|.|..
T Consensus 90 ~~~~~~~~~~~~~~l~V~~------------------------------------------------------------- 108 (213)
T 3r06_A 90 QYYNYPWTFGPGTKLEIKR------------------------------------------------------------- 108 (213)
T ss_dssp ECSSSSCEECCCEEEEECC-------------------------------------------------------------
T ss_pred cccCCceEEcCCceEEEec-------------------------------------------------------------
Confidence 9987643 22334455522
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCC-C-eEEEe--eCc---eEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSP-K-KREIF--DGE---NIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~-~-~~~~~--~~~---~~~L~i 732 (803)
...+|.+...+....+..|+.++|.|.+.|.|++ .+.|+++|.++..+. . ..... ++. ...|.|
T Consensus 109 -------~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i 181 (213)
T 3r06_A 109 -------ADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSL 181 (213)
T ss_dssp -------CCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred -------cCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEe
Confidence 1126666665555556678899999999987653 899999999986531 1 10111 111 346888
Q ss_pred ecCCCCCCceeEEEEEEccCccee
Q psy2776 733 KEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
... ..+|+|.|+|.|.|......
T Consensus 182 ~~~-~~~d~g~YtC~v~n~~~~~~ 204 (213)
T 3r06_A 182 TKA-DYERHNLYTCEVTHKTSTAA 204 (213)
T ss_dssp EHH-HHHTCCEEEEEEEETTCSSC
T ss_pred CHH-HhccCCeEEEEEEecccCcc
Confidence 887 57889999999999876544
No 231
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.75 E-value=2.9e-17 Score=167.68 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=125.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee-------------ecCCCcEEEE--ecCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE-------------ITDSKACRIF--IDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~-------------i~~~~~~~~~--~~~~~~~L~i~~v~~~dsG~Y 579 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|.. .. .....++.+. ......+|.|.++..+|+|.|
T Consensus 12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y 91 (256)
T 3tf7_C 12 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVY 91 (256)
T ss_dssp EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEE
T ss_pred eEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEE
Confidence 577899999999999999999999999832 11 1112344442 234567899999999999999
Q ss_pred EEEEEcCCCCe----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 580 TVTATNAAGST----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 580 ~C~a~n~~g~~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
.|.|.|..+.. .....|.|..... ...|... .
T Consensus 92 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------------~~~~~~~-~-- 127 (256)
T 3tf7_C 92 FCAVSAKGTGSKLSFGKGAKLTVSPGGG-----------------------------------------GSGGGGS-G-- 127 (256)
T ss_dssp EEEEECTTCTTCEEECCCEEEEEEC-------------------------------------------------------
T ss_pred EEEEecCCCccceEECCCeEEEEeCCCC-----------------------------------------CcCCCCc-C--
Confidence 99999986532 1223455533100 0000000 0
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eec---c------------CCCC
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPL---L------------SSPK 718 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l---~------------~~~~ 718 (803)
.-.......+|.+...+....+.+|++++|.|.+.+. .+.+.|+++. ..+ . ...+
T Consensus 128 -------~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r 199 (256)
T 3tf7_C 128 -------GGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDG 199 (256)
T ss_dssp -----------------CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTT
T ss_pred -------cccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCc
Confidence 0000001226677777778889999999999999887 6789999842 111 0 1234
Q ss_pred eEEEe-eCceEEEEEecCCCCCCceeEEEEEEccCccee--eeEEEEEE
Q psy2776 719 KREIF-DGENIILELKEADSETDAGDYKVVATNELGSAT--HGARVTVD 764 (803)
Q Consensus 719 ~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~--~~~~l~V~ 764 (803)
+.+.. .....+|.|.++ +.+|+|.|+|.|+|..|... .-.+|.|.
T Consensus 200 ~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~ 247 (256)
T 3tf7_C 200 YKATRTTQEDFFLTLESA-SPSQTSLYFCASSDAPGQLYFGEGSKLTVL 247 (256)
T ss_dssp CEEECCSSSBCEEEESSC-CGGGCEEEEEEEEEETTEEEECCCEEEEEE
T ss_pred eEEEeCCCCeEEEEECCC-CHHHCEEEEEEecCCCCccEECCCeEEEEE
Confidence 43333 234568999999 89999999999999877542 23445553
No 232
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.75 E-value=7.9e-18 Score=166.65 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=116.6
Q ss_pred ceEEeecceeEEEEEEcCc-------CCCeeEEeeCCee------ec-----------CCCcEEEEec--CCeEEEEEee
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-------PRPEISWMKNGAE------IT-----------DSKACRIFID--EETSTIAIYS 570 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-------p~~~v~W~~~g~~------i~-----------~~~~~~~~~~--~~~~~L~i~~ 570 (803)
...+.+|+.+.|.|.+.+. +.+.+.|+|++.. +. ...++.+..+ .+..+|.|.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 88 (214)
T 2zg1_A 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGD 88 (214)
T ss_dssp EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEcc
Confidence 5778999999999998864 5678999998752 10 1134443321 2346899999
Q ss_pred eccCcCeEEEEEEEcCCCCeE----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 571 VVRADTSTYTVTATNAAGSTS----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~s----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
++.+|+|.|.|.+.|..+... ..+.|.|...+
T Consensus 89 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------- 124 (214)
T 2zg1_A 89 ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI-------------------------------------------- 124 (214)
T ss_dssp CCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC--------------------------------------------
T ss_pred CCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC--------------------------------------------
Confidence 999999999999998763321 34566665422
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec----CCCceEEeeCCeeccCCCCeEEE
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS----PAPSIVWFRNNKPLLSSPKKREI 722 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~~~~~l~~~~~~~~~ 722 (803)
.+|.+.. +. .+.+|+.++|.|.+.|. |.|.+.|++++..+... +
T Consensus 125 ------------------------~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~---- 172 (214)
T 2zg1_A 125 ------------------------EKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-E---- 172 (214)
T ss_dssp ------------------------CCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-S----
T ss_pred ------------------------CCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-C----
Confidence 1344432 11 26789999999999874 88999999998764322 1
Q ss_pred eeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 723 FDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 723 ~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
......|.|..+ ..+|+|.|+|.|.|..|....+..++++
T Consensus 173 -~~~~~~L~i~~~-~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 173 -TTRSSELTLTPR-PEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp -CCCSSEEEECCC-TTCCSCEEEEEEECC----CCEEEEECC
T ss_pred -ceeEEEEEEecc-cHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 123457999998 7899999999999988766555555543
No 233
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.75 E-value=6.1e-18 Score=167.86 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=118.4
Q ss_pred ceEEeecceeEEEEEE-cCcC-CCeeEEeeCC--eeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFP-RPEISWMKNG--AEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p-~~~v~W~~~g--~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+ .+.+ .+.+.|+|++ ..+. ...++.+........|.|.+++.+|+|.|.
T Consensus 9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 88 (216)
T 2xzc_L 9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY 88 (216)
T ss_dssp EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEE
Confidence 4678899999999995 4443 5799999854 2210 124566555556779999999999999999
Q ss_pred EEEEcCCCC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceee
Q psy2776 581 VTATNAAGS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELV 658 (803)
Q Consensus 581 C~a~n~~g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~ 658 (803)
|.|.|..+. ......|.|...
T Consensus 89 C~~~~~~~~~~~~~~~~l~V~~~--------------------------------------------------------- 111 (216)
T 2xzc_L 89 CGTWDSSLNPVFGGGTKLEIKRT--------------------------------------------------------- 111 (216)
T ss_dssp EEEECTTSCEEEBCCEEEEECCC---------------------------------------------------------
T ss_pred EEEEeCCCcceECCCEEEEEcCC---------------------------------------------------------
Confidence 999998761 122334554321
Q ss_pred eeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE--EEe--eCc---eEE
Q psy2776 659 ALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EIF--DGE---NII 729 (803)
Q Consensus 659 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~--~~~--~~~---~~~ 729 (803)
..+|.+...+....+..|+.++|.|.+.|. |.+ .|.|+++|.++..+.... ... ++. .+.
T Consensus 112 -----------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~ 180 (216)
T 2xzc_L 112 -----------VAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSST 180 (216)
T ss_dssp -----------CBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEE
T ss_pred -----------CCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEE
Confidence 125555543333233468999999999984 554 899999999886541111 111 111 247
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
|.|..+ ..+|+|.|+|.|.|.......
T Consensus 181 L~i~~~-~~~d~g~Y~C~a~n~~~~~~~ 207 (216)
T 2xzc_L 181 LTLSKA-DYEKHKVYACEVTHQGLSSPV 207 (216)
T ss_dssp EEEEHH-HHTTCCEEEEEEECTTCSSCE
T ss_pred EEECHH-HhCCCCcEEEEEEcCCCCCce
Confidence 999998 689999999999998876543
No 234
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.74 E-value=3.6e-18 Score=164.77 Aligned_cols=171 Identities=11% Similarity=0.164 Sum_probs=121.6
Q ss_pred eeeeccccceeEEEEe-cCCceeeEEeecCeecc--ccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 315 VTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIK--ESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
...+.+|+++.|.|.+ +.|.+.+.|+|++..+. ........ ..
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~-~~--------------------------------- 49 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTK-GP--------------------------------- 49 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEE-CS---------------------------------
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEec-CC---------------------------------
Confidence 4556789999999999 78899999999975322 11111000 00
Q ss_pred eecCCCceeeeeeecCcceeee-eee---EEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 392 LDFGSGGWWFESKYKDDSLIKG-RNI---TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
....+ ... .+.++...|.|.+++.+|+|.|+|.+.+..+.... .+.
T Consensus 50 -----------------~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l-------------~V~ 99 (184)
T 2ny1_B 50 -----------------SKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL-------------LVF 99 (184)
T ss_dssp -----------------CTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEEEEEE-------------EEE
T ss_pred -----------------hhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEEcCCCcEEE-------------EEE
Confidence 00000 000 01344667999999999999999999987542221 111
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCe
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGA 547 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~ 547 (803)
.+..+ ....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 100 ------------------------------~~~~~-------------~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~ 136 (184)
T 2ny1_B 100 ------------------------------GLTAN-------------SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRG 136 (184)
T ss_dssp ------------------------------EEEES-------------SCSEEETTCCEEEEEECCTTCCCEEEEECTTS
T ss_pred ------------------------------EecCC-------------CCceeecCCCEEEEEEcCCCCCCEEEEEeCCC
Confidence 00011 13467889999999999999999999999986
Q ss_pred eecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 548 EITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 548 ~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.. ....|.|.++..+|+|.|+|.|.|..+..+.++.|.|.+.|
T Consensus 137 ~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 137 KNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp CEEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred cccc----------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence 5521 24689999999999999999999999999999999998765
No 235
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.74 E-value=9.1e-18 Score=159.57 Aligned_cols=155 Identities=14% Similarity=0.223 Sum_probs=111.5
Q ss_pred CceeeeccccceeEEEEe-cCC-ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSP-DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
|....+.+|+.+.|.|.+ +.| .+.+.|+|+|..+.....
T Consensus 11 p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~--------------------------------------- 51 (170)
T 3ry4_A 11 PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------------------------------- 51 (170)
T ss_dssp SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------------------------------
T ss_pred CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------------------------------
Confidence 333445679999999999 665 689999999988865321
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
.+.|.+++.+|+|.|+|.+.+.....
T Consensus 52 ---------------------------------~~~~~~~~~~d~G~Y~C~~~~~~~s~--------------------- 77 (170)
T 3ry4_A 52 ---------------------------------PSYRFKANNNDSGEYTCQTGQTSLSD--------------------- 77 (170)
T ss_dssp ---------------------------------SEEEEECCGGGCEEEEEEETTSBCCC---------------------
T ss_pred ---------------------------------ceEEEecccccCeEEEEEEeCCCceE---------------------
Confidence 14566788899999999998743221
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEI 549 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i 549 (803)
.+.|.|..+|.. ... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+
T Consensus 78 -----------------------~~~l~v~~~~~~-----~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~ 127 (170)
T 3ry4_A 78 -----------------------PVHLTVLFEWLV-----LQT--PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ 127 (170)
T ss_dssp -----------------------CEEEEEECCSEE-----EEC--SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEE
T ss_pred -----------------------eEEEEEECCceE-----ecC--CCceeecCCeEEEEEECCCCCCCceEEEEECCeEc
Confidence 223333333311 111 134578899999999995 4566899999999876
Q ss_pred cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEE
Q psy2776 550 TDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQV 598 (803)
Q Consensus 550 ~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V 598 (803)
.. ......|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 128 ~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 128 KF--------SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EE--------ESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cc--------cCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 42 223568999999999999999999999886 455566665
No 236
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.74 E-value=1e-16 Score=157.08 Aligned_cols=135 Identities=11% Similarity=0.137 Sum_probs=93.3
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeE----EEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNI----TYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
..+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+..... ........|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 35677777665 67889999999999974 7789999999876542211 111245789999999999999999998
Q ss_pred cCCc-----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 218 NEAG-----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 218 n~~g-----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|... ..+..+.|.|...+.
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~-------------------------------------------------------- 107 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYE-------------------------------------------------------- 107 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSC--------------------------------------------------------
T ss_pred cCCCCccccCCCCCEEEEeeccCC--------------------------------------------------------
Confidence 7532 223345666654310
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccc
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKE 348 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~ 348 (803)
.+.+.. .+. ..+.+|+.++|.|.+..+.+.+.|+|+|..+..
T Consensus 108 ------------~p~i~~-~p~-~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~ 149 (201)
T 1nkr_A 108 ------------KPSLSA-QPG-PTVLAGENVTLSCSSRSSYDMYHLSREGEAHER 149 (201)
T ss_dssp ------------CCEEEE-ESC-SEECTTCEEEEEEEESSCCSEEEEEETTCSSCE
T ss_pred ------------CCceec-CCC-CccCCCCeEEEEEeCCCCCceEEEEECCcccCc
Confidence 011111 111 245679999999999656789999999887754
No 237
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.74 E-value=8.6e-18 Score=145.49 Aligned_cols=94 Identities=31% Similarity=0.322 Sum_probs=89.1
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.||.|+..+.+..+.+|+++.|.|.+.|.|.|.|.|+|||.+|..+.++.+..++...+|.|.++ +.+|+|.|+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 90 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA-LPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSC-CGGGCEEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecC-ChhhCEEEEEEEEE
Confidence 48999999999999999999999999999999999999999999999999888888899999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
.+|..+.++.|.|..
T Consensus 91 ~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 91 AAGEAYAAAAVTVLE 105 (107)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEEc
Confidence 999999999999864
No 238
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.7e-17 Score=166.12 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=119.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--eeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+.+. |.+.+.|+|++ ..+. ...++.+........|.|.+++.+|+|.|.
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 90 (256)
T 3ux9_B 11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY 90 (256)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence 4678899999999999987 77899999852 1111 124566655556679999999999999999
Q ss_pred EEEEcCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 581 VTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 581 C~a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|.|.|..+.. .....|.|...+........+.|.
T Consensus 91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~------------------------------------------- 127 (256)
T 3ux9_B 91 CQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYT------------------------------------------- 127 (256)
T ss_dssp EEEEETTTTEEEECCCEEEEEC----------------------------------------------------------
T ss_pred EEEEECCCCceEECCCEEEEEECCCCCcCccceeEEe-------------------------------------------
Confidence 9999876532 233566665533000000000000
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeC--Ceec------c-----------CC
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRN--NKPL------L-----------SS 716 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~--~~~l------~-----------~~ 716 (803)
.......++.+.. +....+.+|++++|.|.+.|.| .+.+.|+|+ +..+ . ..
T Consensus 128 -------~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (256)
T 3ux9_B 128 -------KLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVK 199 (256)
T ss_dssp --------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGT
T ss_pred -------ecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCcccc
Confidence 0000111223333 3345688999999999999877 779999996 3222 1 12
Q ss_pred CCeEEEee--CceEEEEEecCCCCCCceeEEEEEEccC
Q psy2776 717 PKKREIFD--GENIILELKEADSETDAGDYKVVATNEL 752 (803)
Q Consensus 717 ~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~~ 752 (803)
.++.+..+ ....+|.|.++ +.+|+|.|.|.|.|..
T Consensus 200 ~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 200 GRFTISRDNSKNTLYLQMNSL-RAEDTAVYYCARYIDF 236 (256)
T ss_dssp TTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEEEETT
T ss_pred ceEEEEecCCCCEEEEEECCC-ChhhCEEEEEEEEcCC
Confidence 36666654 45678999999 7999999999999963
No 239
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.74 E-value=3.4e-18 Score=165.23 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=52.7
Q ss_pred EeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+++.|.|.+ |.|.+.|+|+|..+..... ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 4489999999988 8899999999999875322 45689999999999999999999998765
No 240
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.73 E-value=7.4e-18 Score=171.17 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=121.3
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcE-EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCC-----CeE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKAC-RIFIDEETSTIAIYSVVRADTSTYTVTATNAAG-----STS 591 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~-~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g-----~~s 591 (803)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.|.|..+ ..+
T Consensus 16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S 94 (257)
T 1b6u_A 16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS 94 (257)
T ss_dssp SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence 56789999999999975 56789999998755321100 000112357899999999999999999986532 235
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
..+.|.|.+.. .
T Consensus 95 ~~~~L~V~~~~--------------------------------------------------------------------~ 106 (257)
T 1b6u_A 95 DPLDIVITGLY--------------------------------------------------------------------E 106 (257)
T ss_dssp CCEEEEEECSS--------------------------------------------------------------------C
T ss_pred CCEEEecccCC--------------------------------------------------------------------C
Confidence 55667665421 1
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.+...+. ..+.+|++++|.|.+.+.| +.|.|+|+|..+....+...... .....|.|.++ + |+|.|+|.|.|
T Consensus 107 ~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v-~--D~G~Y~C~a~~ 181 (257)
T 1b6u_A 107 KPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA-T--HGGTYRCFGSF 181 (257)
T ss_dssp CCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEEC-C--SCEEEEEEEEC
T ss_pred CcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEeccc-c--cCEEEEEEEEc
Confidence 455544443 4678999999999998754 68999999987754332211111 23578999998 5 99999999998
Q ss_pred cCc-----ceeeeEEEEEEee
Q psy2776 751 ELG-----SATHGARVTVDVE 766 (803)
Q Consensus 751 ~~G-----~~~~~~~l~V~~~ 766 (803)
..+ ..+..+.|.|.+.
T Consensus 182 ~~~p~~~s~~S~pl~L~V~g~ 202 (257)
T 1b6u_A 182 RDSPYEWSNSSDPLLVSVTGN 202 (257)
T ss_dssp SSCTTBBCCCCCCEEECCBCC
T ss_pred CCCCcccccCCCCEEEEEecc
Confidence 632 3356677777654
No 241
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.73 E-value=9.6e-17 Score=162.82 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=119.1
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|++ .. +. ...++.+........|.|.++..+|+|
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 89 (247)
T 1svz_A 10 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG 89 (247)
T ss_dssp EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCE
Confidence 57789999999999999988 6899999853 21 11 134566555556679999999999999
Q ss_pred EEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|.|.|.|..+. ....+.|.|..++... +
T Consensus 90 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~------------------------------------------~-------- 119 (247)
T 1svz_A 90 IYYCFQGSHFPPTFGGGTKLEIKGGGGSG------------------------------------------G-------- 119 (247)
T ss_dssp EEEEEECSSSSCEECCCEEEEEC---------------------------------------------------------
T ss_pred EEEEEEccCCccEECCCEEEEEECCcccc------------------------------------------c--------
Confidence 999999998654 2233566665432000 0
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCC--eec------c-----------C
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNN--KPL------L-----------S 715 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~--~~l------~-----------~ 715 (803)
.......++.++..+....+.+|++++|.|.+.+.| .+.+.|+|++ ..+ . .
T Consensus 120 --------~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (247)
T 1svz_A 120 --------GGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDF 191 (247)
T ss_dssp ----------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGG
T ss_pred --------cccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccc
Confidence 000000122233333445689999999999999885 5689999963 211 0 1
Q ss_pred CCCeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 716 SPKKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 716 ~~~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
..++.+.. .....+|.|.++ +.+|+|.|.|.|.|.
T Consensus 192 ~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 192 KGRFAFSLDTSTSTAFLQINNL-KNEDTATYFCVRDRH 228 (247)
T ss_dssp SSSEEEEEEGGGTEEEEEECSC-CGGGCEEEEEEEEEG
T ss_pred cCcEEEEEecCCCEEEEEECCC-ChhHCEEEEEEEecc
Confidence 34555554 345678999999 799999999999995
No 242
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.73 E-value=1.6e-17 Score=159.08 Aligned_cols=155 Identities=15% Similarity=0.267 Sum_probs=113.9
Q ss_pred ceEEeecceeEEEEEEc--CcCCCeeEEee--CCeee----------cCCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYF--GFPRPEISWMK--NGAEI----------TDSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~--g~p~~~v~W~~--~g~~i----------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
.....+|+++.|.|... +.+.+.+.|+| ++..| ....++.+. . +++|.|.+++.+|+|.|+|.
T Consensus 8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--~-ngsL~I~~v~~~DsG~Y~c~ 84 (182)
T 1hnf_A 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--K-NGTLKIKHLKTDDQDIYKVS 84 (182)
T ss_dssp EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--T-TSCEEECSCCGGGCEEEEEE
T ss_pred EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--C-CCCEEECCCChhhCEEEEEE
Confidence 46678899999999532 24567999999 88877 234455543 2 34899999999999999999
Q ss_pred EEcCCCCeE--EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 583 ATNAAGSTS--LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 583 a~n~~g~~s--~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
|.|..|... ..+.|.|..+.
T Consensus 85 ~~n~~g~~~~~~~~~L~V~~~~---------------------------------------------------------- 106 (182)
T 1hnf_A 85 IYDTKGKNVLEKIFDLKIQERV---------------------------------------------------------- 106 (182)
T ss_dssp EEETTSCEEEEEEEEEEEECCC----------------------------------------------------------
T ss_pred EEeCCCceeEEEEEEEEEcCcC----------------------------------------------------------
Confidence 999988764 45666664421
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCC
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETD 740 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D 740 (803)
.+|.+.. .+..+.|+|.+.+.|.+.+.|+++|..+ .. ... .|.+.. ..+|
T Consensus 107 ----------~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~--~~~d 156 (182)
T 1hnf_A 107 ----------SKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-------SQR--VITHKW--TTSL 156 (182)
T ss_dssp ----------CCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-------ESS--CEEEEC--CSCE
T ss_pred ----------CCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-------CCc--EEEEec--ccCC
Confidence 1344432 2347899999999999999999999887 11 122 244433 3689
Q ss_pred ceeEEEEEEccCcceeeeEEEE
Q psy2776 741 AGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 741 ~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
+|.|+|.|+|.+|..+....+.
T Consensus 157 ~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 157 SAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp EEEEEEEEECSSCEEEEEEEEE
T ss_pred CcEEEEEEEeCCCCcEEcceec
Confidence 9999999999999998877663
No 243
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.73 E-value=4.7e-17 Score=163.10 Aligned_cols=177 Identities=15% Similarity=0.245 Sum_probs=120.7
Q ss_pred cCcCeeeecCCcEEEEEEECccCC-CeeEEEEcCeecc--------------ceeEE----------EecCeeEEEEecC
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPT-PDIKWYKDDSLIK--------------GRNIT----------YENNVARFTVVNC 204 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~-p~i~W~~~~~~~~--------------~~~~~----------~~~~~~~L~i~~v 204 (803)
.+.++.+.+|+.+.|.|.+.+.|. +.+.|++++.... ..++. .... ..|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~L~i~~v 84 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-GRLVLAEA 84 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-CCEEESSC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-ceEEEccc
Confidence 356678889999999999998885 8999998664321 12222 2222 34999999
Q ss_pred CCCcceEEEEEEEcCC-cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceee
Q psy2776 205 SESSEGRYTCKATNEA-GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~-g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (803)
+.+|+|.|+|.+.|.. +.....+.|.|...|..+.
T Consensus 85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~-------------------------------------------- 120 (231)
T 2pet_A 85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE-------------------------------------------- 120 (231)
T ss_dssp CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCE--------------------------------------------
T ss_pred CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcE--------------------------------------------
Confidence 9999999999999987 6677778888876632110
Q ss_pred ccccccccceeeeeeccCCCccccccccCCceeeeccccce-eEEEEe--cCCceeeEEeecCeeccccceeEEEEcCce
Q psy2776 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDA-TFQVEL--SSPDIQVKWLKKGKEIKESARHIITSRGTQ 360 (803)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~--~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 360 (803)
+...+....+.+|+.+ .|.|.+ +.|.+.+.|+++|.++..... ...
T Consensus 121 -------------------------~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~------~~~ 169 (231)
T 2pet_A 121 -------------------------VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVE------MNP 169 (231)
T ss_dssp -------------------------EEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSS------CCS
T ss_pred -------------------------EecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccc------ccc
Confidence 0111222334468877 999998 699999999999999876541 000
Q ss_pred eEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEE
Q psy2776 361 RKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTC 440 (803)
Q Consensus 361 ~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 440 (803)
...........+.|.|+|.. .|.|.....+|.|.|+|
T Consensus 170 ~~~~~~~~~~~~~g~~~~~~-------------------------------------------~L~i~~~~~dd~g~Y~C 206 (231)
T 2pet_A 170 EGYMTSRTVREASGLLSLTS-------------------------------------------TLYLRLRKDDRDASFHC 206 (231)
T ss_dssp SEEEEEEEEECTTSCEEEEE-------------------------------------------EEEEECCGGGGGCEEEE
T ss_pred ceeecceeEecCCCeEEEEE-------------------------------------------EEEEecchhhCCceEEE
Confidence 11222233334455665542 37787666667999999
Q ss_pred EeeCC
Q psy2776 441 KATNE 445 (803)
Q Consensus 441 ~a~~~ 445 (803)
.|.|.
T Consensus 207 ~a~n~ 211 (231)
T 2pet_A 207 AAHYS 211 (231)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99994
No 244
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.72 E-value=4.2e-18 Score=169.68 Aligned_cols=174 Identities=14% Similarity=0.185 Sum_probs=120.6
Q ss_pred ceEEeecceeEEEEEEcC-cCCCe----eEEeeCCeeec-------------CCCcEEEEe-----cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPE----ISWMKNGAEIT-------------DSKACRIFI-----DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~----v~W~~~g~~i~-------------~~~~~~~~~-----~~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+ .+.+. +.|+|++.... ...+..+.. ..+...|.|.+++.
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~ 87 (221)
T 3eow_R 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRV 87 (221)
T ss_dssp CCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSSC
T ss_pred cEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCCh
Confidence 355678999999999854 44444 99999864211 123334332 12456899999999
Q ss_pred CcCeEEEEEEEcCC-CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 574 ADTSTYTVTATNAA-GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~-g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|+|.|+|.+.|.. |.....+.|.|..
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~---------------------------------------------------- 115 (221)
T 3eow_R 88 EDEGSYTCLFVTFPQGSRSVDIWLRVLA---------------------------------------------------- 115 (221)
T ss_dssp CCCSCBEEEEEESSSCSCEEECCCCCCC----------------------------------------------------
T ss_pred HHCeEEEEEEEeCCCCceEEEEEEEEEE----------------------------------------------------
Confidence 99999999999976 7777777777755
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeE-EEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeC---ce
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTI-RLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDG---EN 727 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v-~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~---~~ 727 (803)
+|.+...+.... .+|+.+ .|.|.+. |.|.|.+.|++++.............++ ..
T Consensus 116 -------------------~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 175 (221)
T 3eow_R 116 -------------------KPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVT 175 (221)
T ss_dssp -------------------CCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEEECCCCBTTBCCE
T ss_pred -------------------CCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccceeecCCCCcEEEE
Confidence 333433222222 568888 5999987 8899999999875443221111001111 24
Q ss_pred EEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 728 IILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+.|.|.++ ..+|+|.|+|.|.|..+.....+.|.+
T Consensus 176 s~L~i~~~-~~~d~g~ytC~a~n~~~~~~~~~~v~~ 210 (221)
T 3eow_R 176 SLWILVPS-SQVDGKQVTCKVEHESFEKPQLLTVSL 210 (221)
T ss_dssp EEEECCCC-SCCCCCCEEEEECCSCSSSCEEEEECC
T ss_pred EEEEEeCC-HHHCCCeEEEEEECCCCCCCeEEEEEE
Confidence 67999999 789999999999999998776655554
No 245
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.72 E-value=2.7e-17 Score=164.55 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=116.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eee------c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEI------T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ . ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (227)
T 1mju_H 9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS 88 (227)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCc
Confidence 46788999999999999877 6789999863 211 0 0245555432 3567999999999
Q ss_pred CcCeEEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 574 ADTSTYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|+|.|.|.|.|..+. ......|.|...
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~--------------------------------------------------- 117 (227)
T 1mju_H 89 DDSAVYYCANKLGWFPYWGQGTLVTVSAA--------------------------------------------------- 117 (227)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEECSS---------------------------------------------------
T ss_pred ccCEEEEEEECCCCceEEcCcEEEEEcCC---------------------------------------------------
Confidence 9999999999986321 112235555331
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccC--CCCeEEEeeC---
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLS--SPKKREIFDG--- 725 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~--~~~~~~~~~~--- 725 (803)
...+|.+........+.+|+.++|.|.+.|. |.+ .|.|++++..+.. .... ...+
T Consensus 118 ----------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~--~~~g~~~ 179 (227)
T 1mju_H 118 ----------------KTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV--LQSDLYT 179 (227)
T ss_dssp ----------------CCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE--EETTEEE
T ss_pred ----------------CCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCce--ecCCeEE
Confidence 0114444433223346689999999999986 777 9999999887531 1111 1112
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
....|.|..+ ..+| |.|+|.|.|..+.....+.+.+.+
T Consensus 180 ~~s~L~i~~~-~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~ 217 (227)
T 1mju_H 180 LSSSVTVTSS-TWPS-QSITCNVAHPASSTKVDKKIEPRG 217 (227)
T ss_dssp EEEEEEECTT-TTTT-SCCEEEEEEGGGTEEEEEECCCCC
T ss_pred EEEEEEEchh-hcCC-CeEEEEEEECCCCcceEEEeCCCC
Confidence 2357899888 5567 999999999888877666665543
No 246
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=163.77 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=126.2
Q ss_pred CceeeeccccceeEEEEe-cCCce---eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDI---QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~---~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
|....+..|+++.|.|.+ +.|.+ .+.|+|++..+............. ..+... ..|.+.
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~---~~~~~~---~~~r~~----------- 68 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYG---LHVSPA---YEGRVE----------- 68 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTE---EEECGG---GTTTEE-----------
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCC---eEeCcc---ccceEE-----------
Confidence 455666779999999999 66544 589999987765433222221111 000000 000000
Q ss_pred eeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeec
Q psy2776 389 LKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRK 468 (803)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~ 468 (803)
+. ......+..+|+|.+++.+|+|.|.|.+.+..+......
T Consensus 69 ----------------------~~--~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--------------- 109 (218)
T 4frw_A 69 ----------------------QP--PPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQAR--------------- 109 (218)
T ss_dssp ----------------------CC--SSCCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEE---------------
T ss_pred ----------------------Ee--cccccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeE---------------
Confidence 00 001122345699999999999999999987665544421
Q ss_pred cCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCee
Q psy2776 469 ADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAE 548 (803)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~ 548 (803)
..+.+..++.... .......+..|+.+.|.|.+.|.|+|.++|++++..
T Consensus 110 --------------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~ 158 (218)
T 4frw_A 110 --------------------------LRLRVLVPPLPSL-----NPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG 158 (218)
T ss_dssp --------------------------EEEEEEBCCCCEE-----EECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred --------------------------EEEEEeeecccee-----eeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence 1122222221110 111234556789999999999999999999999987
Q ss_pred ecCCCcEEEEe-cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 549 ITDSKACRIFI-DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 549 i~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+.......... ....+.|.|.++..+|+|.|+|.|+|..|..+..+.+.|..
T Consensus 159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 159 TTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp EEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred cccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 76543221110 01136899999999999999999999999988777776654
No 247
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.72 E-value=2.2e-17 Score=168.16 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=119.3
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeCCe--ee----------c--CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKNGA--EI----------T--DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g~--~i----------~--~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+.| .+.+.|+|++. .+ . ...++.+....+...|.|.+++.+|+|
T Consensus 43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 122 (252)
T 3bkj_L 43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLG 122 (252)
T ss_dssp EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCE
Confidence 57789999999999999988 68999999641 11 0 124555555556679999999999999
Q ss_pred EEEEEEEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|.|.|.|..+.. .....|.|...
T Consensus 123 ~Y~C~~~~~~~~~~~~~~~l~V~~~------------------------------------------------------- 147 (252)
T 3bkj_L 123 VYYCFQASLVPLTFGAGTKLELKRA------------------------------------------------------- 147 (252)
T ss_dssp EEEEEECSBSSCEECCCEEEEECCC-------------------------------------------------------
T ss_pred EEEEEEEcCCccEECCCEEEEEeCC-------------------------------------------------------
Confidence 9999999876532 12234555321
Q ss_pred eeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE--EE--eeCc---e
Q psy2776 657 LVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR--EI--FDGE---N 727 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~--~~--~~~~---~ 727 (803)
..+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+++|.++..+.... .. .++. .
T Consensus 148 -------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~ 214 (252)
T 3bkj_L 148 -------------DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS 214 (252)
T ss_dssp -------------CBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEE
T ss_pred -------------CcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEE
Confidence 114555544333334479999999999985 544 799999999886541110 01 1111 3
Q ss_pred EEEEEecCCCCCCceeEEEEEEccCcce
Q psy2776 728 IILELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 728 ~~L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
+.|.|..+ ..+|+|.|+|.|.|.....
T Consensus 215 s~L~i~~~-~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 215 STLTLTKD-EYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EEEEEEHH-HHHHCCEEEEEEECTTCSS
T ss_pred EEEEEcch-hccCCCeEEEEEEeCCCCC
Confidence 56999999 6789999999999987664
No 248
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.72 E-value=9e-17 Score=163.16 Aligned_cols=227 Identities=10% Similarity=0.084 Sum_probs=120.8
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEE----EecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNIT----YENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
..+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... .......|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 35677777665 67889999999999975 56789999998755322111 11235689999999999999999998
Q ss_pred cCCc-----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccc
Q psy2776 218 NEAG-----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLEST 292 (803)
Q Consensus 218 n~~g-----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (803)
|..+ ..+..+.|.|.+...
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~-------------------------------------------------------- 106 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYE-------------------------------------------------------- 106 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSC--------------------------------------------------------
T ss_pred ccCCCccccccCCCEEEecccCCC--------------------------------------------------------
Confidence 6532 123345666654310
Q ss_pred eeeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCC
Q psy2776 293 AWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDD 372 (803)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d 372 (803)
.+.+.. .+. ..+.+|+.++|.|.+..+.+.+.|+|+|..+...........+
T Consensus 107 ------------~P~l~~-~p~-~~V~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~-------------- 158 (257)
T 1b6u_A 107 ------------KPSLSA-QPG-PTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPKVNG-------------- 158 (257)
T ss_dssp ------------CCEEEC-SSC-TTCBTTCEEEEEEECSSCCSEEEEEETTSSCEECCBCBCCSSS--------------
T ss_pred ------------CcceEc-cCC-CccCCCCEEEEEEeCCCCCcEEEEEECCcccCcccccccccCC--------------
Confidence 011111 111 2356799999999994445789999998776532211000000
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETR 452 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~ 452 (803)
.....|.|.+++ |+|.|+|.|.+..+....+
T Consensus 159 -----------------------------------------------~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s 189 (257)
T 1b6u_A 159 -----------------------------------------------TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWS 189 (257)
T ss_dssp -----------------------------------------------CCBEEEEEEECC--SCEEEEEEEECSSCTTBBC
T ss_pred -----------------------------------------------ceeEEEEecccc--cCEEEEEEEEcCCCCcccc
Confidence 113458899998 9999999999764321111
Q ss_pred cccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE
Q psy2776 453 TMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY 532 (803)
Q Consensus 453 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~ 532 (803)
. .+..+.|.|..+|..... ++.......|..+.|.|.+
T Consensus 190 ~-------------------------------------~S~pl~L~V~g~p~~~~p-----~~~~~~~~~g~~~~l~~~~ 227 (257)
T 1b6u_A 190 N-------------------------------------SSDPLLVSVTGNPSNSWP-----SPTEPSSETGNPRHLHAAA 227 (257)
T ss_dssp C-------------------------------------CCCCEEECCBCCC-----------------------------
T ss_pred c-------------------------------------CCCCEEEEEeccCCCCCC-----CCcccCccCCCeEEEEEEE
Confidence 0 012466677776654311 1112234568899999876
Q ss_pred cCcCCCeeEEeeCC
Q psy2776 533 FGFPRPEISWMKNG 546 (803)
Q Consensus 533 ~g~p~~~v~W~~~g 546 (803)
|.+.+.+.|..-+
T Consensus 228 -~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 228 -EQKLISEEDLNLD 240 (257)
T ss_dssp --------------
T ss_pred -cchHHHHHHhhhh
Confidence 4677788897654
No 249
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.72 E-value=3.8e-17 Score=168.23 Aligned_cols=174 Identities=13% Similarity=0.084 Sum_probs=113.1
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee------------ecCC---C-cEEEEe-cCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE------------ITDS---K-ACRIFI-DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~------------i~~~---~-~~~~~~-~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.|.+.+ +.+.+.|+|.. .. ...+ . ++.+.. ......|.|.+++.+|+|
T Consensus 36 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 114 (270)
T 3qib_D 36 YLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSA 114 (270)
T ss_dssp EEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCE
T ss_pred eEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCe
Confidence 467899999999999876 77899999822 11 0011 0 444332 234679999999999999
Q ss_pred EEEEEEEcCCC----CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 578 TYTVTATNAAG----STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 578 ~Y~C~a~n~~g----~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|.+.+..+ .......|.|....
T Consensus 115 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------- 143 (270)
T 3qib_D 115 LYLCASSLNWSQDTQYFGPGTRLLVLEDL--------------------------------------------------- 143 (270)
T ss_dssp EEEEEEESCTTCCCCEECCCEEEEEESCS---------------------------------------------------
T ss_pred EEEEEEecCCCccceEECCcEEEEEcccc---------------------------------------------------
Confidence 99999997532 12223345543310
Q ss_pred cceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEE---E-----
Q psy2776 654 TTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKRE---I----- 722 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~---~----- 722 (803)
....+|.+. ..+....+..|+.++|.|.+.| .|.+ .+.|+++|.++..+.+... .
T Consensus 144 --------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 209 (270)
T 3qib_D 144 --------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPAL 209 (270)
T ss_dssp --------------TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTS
T ss_pred --------------ccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccC
Confidence 011134333 3333445667999999999998 5766 8999999999865322110 0
Q ss_pred eeCc---eEEEEEecCCCCCC-ceeEEEEEEccCcceee
Q psy2776 723 FDGE---NIILELKEADSETD-AGDYKVVATNELGSATH 757 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~ 757 (803)
.++. ...|.|... ..+| +|.|+|.|.|.......
T Consensus 210 ~~~~~~~~s~L~i~~~-~~~d~~g~YtC~v~~~~l~~~~ 247 (270)
T 3qib_D 210 NDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEND 247 (270)
T ss_dssp SSCCEEEEEEEEEEHH-HHHSTTCEEEEEEEECCBCTTS
T ss_pred CCCCEEEEEEEEEcHH-HhccCCCeEEEEEEecCCCCcc
Confidence 1121 245788877 4566 99999999998776553
No 250
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=168.17 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=125.4
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--eeec-----------------CCCcEEEEe--cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AEIT-----------------DSKACRIFI--DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~i~-----------------~~~~~~~~~--~~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +.+.+.|+|.. ..+. ...++.+.. ......|.|.++..
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (280)
T 3fku_X 9 AEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRS 88 (280)
T ss_dssp CCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCS
T ss_pred CEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 5678899999999999876 55789999742 1110 013455542 33457899999999
Q ss_pred CcCeEEEEEEEcCC---------CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEe
Q psy2776 574 ADTSTYTVTATNAA---------GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~---------g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 644 (803)
+|+|.|.|.+.|.. ........|.|...+..
T Consensus 89 ~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~---------------------------------------- 128 (280)
T 3fku_X 89 EDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGG---------------------------------------- 128 (280)
T ss_dssp TTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------------------------------------
T ss_pred hhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCc----------------------------------------
Confidence 99999999999861 11222344555331100
Q ss_pred cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cC-CCceEEeeC--Ceecc------
Q psy2776 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SP-APSIVWFRN--NKPLL------ 714 (803)
Q Consensus 645 n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p-~~~v~W~~~--~~~l~------ 714 (803)
.+.. .......+|.+...+. ..+.+|++++|.|.+.+ .+ .+.+.|++. +..+.
T Consensus 129 --~~~~--------------~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~ 191 (280)
T 3fku_X 129 --SGGG--------------GSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRN 191 (280)
T ss_dssp --------------------------CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTT
T ss_pred --cCCC--------------CCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEec
Confidence 0000 0000011444555555 78899999999999998 44 478999983 22221
Q ss_pred ------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcc---eeeeEEEEEEeeccCCCCCc
Q psy2776 715 ------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGS---ATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 715 ------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~pp~~~ 774 (803)
...++.+..++..+.|.|.++ +.+|+|.|.|.|.|..+. ....+.|.|...+..+|.+.
T Consensus 192 ~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~ 259 (280)
T 3fku_X 192 NDRPSGISERFSASRSGNTASLTITGL-QPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAA 259 (280)
T ss_dssp CCCCSSSCTTEEEEEETTEEEEEECSC-CGGGCSEEEEEEEETTTTEEEEBCCCEEEEC----------
T ss_pred cccCCCCCCCEEEEccCCEEEEEECCC-CHHHCEEEEEEEecCCCCceEECCCEEEEECCCCCCCCcEE
Confidence 235677777777889999999 799999999999998732 24456788876666677765
No 251
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.72 E-value=1.1e-15 Score=180.58 Aligned_cols=236 Identities=10% Similarity=0.075 Sum_probs=146.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeE-Ee--eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEIS-WM--KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSL 592 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~-W~--~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~ 592 (803)
...+.+|+.+.|.|.+.|.|.|.+. |+ ++|..+.......+......+.|.|.++...|+|.|+|.|.|..|. .+.
T Consensus 173 ~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~ 252 (731)
T 2v5y_A 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252 (731)
T ss_dssp CEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECC
T ss_pred ceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCccee
Confidence 5788999999999999999999998 88 7887765432111111122479999999999999999999999998 677
Q ss_pred EEEEEEeeeEeE---------eeecc------------------cccEEEeee-----eCCccceEEEcccccCceeEEE
Q psy2776 593 DLSLQVLGYIIQ---------QQEKN------------------SLKFTKVAT-----LDPSTLQYTVENLRDKSEYYFQ 640 (803)
Q Consensus 593 s~~l~V~~~p~~---------~~~~~------------------~~~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 640 (803)
.+.|.|..+|.. ..... .+.|..... .......+++.+|.+...|.|+
T Consensus 253 ~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 332 (731)
T 2v5y_A 253 YAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEIS 332 (731)
T ss_dssp CEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEECSCCTTCEEEEE
T ss_pred eEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEeCCCCCCEEEEE
Confidence 788888877610 00001 122221110 1123467899999999999999
Q ss_pred EEEe--cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-----CC--CceEEeeCCe
Q psy2776 641 VFAE--NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-----PA--PSIVWFRNNK 711 (803)
Q Consensus 641 ~~a~--n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-----p~--~~v~W~~~~~ 711 (803)
|+|. |..|.+..+....+.+.. ..++.+|..+. ........+.|....... +. -.+.|...+.
T Consensus 333 V~A~~~N~~G~s~~S~~~~~~t~~----~~p~~~P~~~~----~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~ 404 (731)
T 2v5y_A 333 VLLTRPGEGGTGSPGPALRTRTKC----ADPMRGPRKLE----VVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG 404 (731)
T ss_dssp EEEECSSTTCSCCBCCCEEEECCC----CCCSCCCEEEE----EEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESS
T ss_pred EEEEecCCCccccCCCcEEeeecC----CCCCCCCceeE----EEeccCCeEEEEEECCCcccccceeeeEEEEEEEccC
Confidence 9999 999999877654443322 12333454332 112223466666654211 00 1244443221
Q ss_pred eccCCCCe---EEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 712 PLLSSPKK---REIFDGENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 712 ~l~~~~~~---~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
.. .... .+........+.|.++ .....-.|++.|.|..|... +..+.+.
T Consensus 405 ~~--~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~~~V~A~n~~G~s~-S~~~~~~ 456 (731)
T 2v5y_A 405 GQ--EQVREEVSWDTENSHPQHTITNL-SPYTNVSVKLILMNPEGRKE-SQELIVQ 456 (731)
T ss_dssp SS--EEEEEEEECCSSCSSCEEEECSC-CSSCEEEEEEEEECSSCEEE-CCCEEEE
T ss_pred CC--CccceeEEEEecCCcceEEECCC-CCCCEEEEEEEEEcCCCCCC-CceEEEE
Confidence 00 0000 0111233446788887 56666777888999999863 5556654
No 252
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.72 E-value=4e-17 Score=167.60 Aligned_cols=266 Identities=15% Similarity=0.198 Sum_probs=102.0
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCe-eEEEEcCeeccceeE-EEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPD-IKWYKDDSLIKGRNI-TYENNVARFTVVNCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~-i~W~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
..|++..|.+|+++.|.|.+. .+.|. +.|.-. +..... ........|.|.+++.+ |.|+|++.......+..
T Consensus 4 v~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~---l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~ 77 (291)
T 1mq8_A 4 VSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETP---LPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAK 77 (291)
T ss_dssp EECSEEEECTTCEEEEEEEEC-CSSCSEEEEECS---SCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEE
T ss_pred EeCCccEEcCCCeEEEEEeCC-CCCCccceEEec---CCCcccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEE
Confidence 345667889999999999996 45555 888531 111111 11123346889998854 46999997543334455
Q ss_pred EEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeeeeeccCCCccc
Q psy2776 227 CTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFWWFESKSTPAV 306 (803)
Q Consensus 227 ~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (803)
+.|.|...|...
T Consensus 78 v~l~V~~~P~~v-------------------------------------------------------------------- 89 (291)
T 1mq8_A 78 TFLTVYWTPERV-------------------------------------------------------------------- 89 (291)
T ss_dssp CEEEECBCCSCC--------------------------------------------------------------------
T ss_pred EEEEEecCCCCC--------------------------------------------------------------------
Confidence 667776653111
Q ss_pred cccccCCceeeeccccceeEEEEe--cCCce--eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEec
Q psy2776 307 EFLSKLPSVTLVPHLGDATFQVEL--SSPDI--QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 307 ~~~~~~~~~~~~~~g~~~~l~C~~--~~p~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
.+...+ ..+.+|+.++|.|.+ +.|.. +|.|+|+++.+...... ..
T Consensus 90 -~I~~~~--~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~---~~------------------------- 138 (291)
T 1mq8_A 90 -ELAPLP--SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV---GE------------------------- 138 (291)
T ss_dssp -CBCCCC--SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---BT-------------------------
T ss_pred -EEecCC--ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---CC-------------------------
Confidence 011111 225679999999999 45543 68999999887642200 00
Q ss_pred cccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCcee
Q psy2776 383 VKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSI 462 (803)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~ 462 (803)
....+|.+.....+|.+.|+|+|.+..+.....
T Consensus 139 -------------------------------------~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~---------- 171 (291)
T 1mq8_A 139 -------------------------------------PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE---------- 171 (291)
T ss_dssp -------------------------------------TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSC----------
T ss_pred -------------------------------------CceEEEEeeeeeccCCceEEEEEEecCCccCCc----------
Confidence 011235555566677779999999875521000
Q ss_pred EEeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCC-ccceeeeccccceEEeecceeEEEEEEcCcCCC---
Q psy2776 463 VVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQ-PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--- 538 (803)
Q Consensus 463 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--- 538 (803)
+ +...+....|.|.++|.. +.+.. ...+.+|+.++|+|.+.|+|++
T Consensus 172 -l-----------------------~~~~s~~~~L~V~~~P~~~~~~~~------p~~l~eG~~v~l~C~~~g~~P~~~~ 221 (291)
T 1mq8_A 172 -L-----------------------FENTSAPYQLQTFVLPATPPQLVS------PRVLEVDTQGTVVCSLDGLFPVSEA 221 (291)
T ss_dssp -E-----------------------EEECCCCEECBC-------------------------------------------
T ss_pred -c-----------------------ccccccceEEEEEecCCCCceecC------CcCccCCCeEEEEEEcCCCCCCccc
Confidence 0 000012567788887643 33221 1257889999999999998664
Q ss_pred eeEEeeCCeeecCCCcEEEEecCCeEEEEEeee---ccCc--CeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 539 EISWMKNGAEITDSKACRIFIDEETSTIAIYSV---VRAD--TSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 539 ~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v---~~~d--sG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+.|+++|+.+... +..+ +..+.+... .++| .+.|+|.|.|..........|.|...|
T Consensus 222 ~v~w~~~g~~l~~~----~~~~--g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 222 QVHLALGDQRLNPT----VTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEEEECCEecCce----eeec--CCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 58999999988752 1111 223333332 3434 667778888765556667777776644
No 253
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.72 E-value=2.7e-17 Score=166.74 Aligned_cols=174 Identities=15% Similarity=0.119 Sum_probs=119.6
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee----------------CCeeecCC---CcEEEEe-cCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK----------------NGAEITDS---KACRIFI-DEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~----------------~g~~i~~~---~~~~~~~-~~~~~~L~i~~v~~~ds 576 (803)
...+.+|+.+.|.|.+.+.+.+.+.|+| ++...... .++.+.. .....+|.|.+++.+|+
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~ 89 (246)
T 4dzb_B 10 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS 89 (246)
T ss_dssp EEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred EEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence 5778999999999999999999999998 33333332 4555543 23467999999999999
Q ss_pred eEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 577 STYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 577 G~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
|.|.|.|.|..+. ......|.|....
T Consensus 90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 119 (246)
T 4dzb_B 90 SFYICSARTSGDFGEQFFGPGTRLTVLEDL-------------------------------------------------- 119 (246)
T ss_dssp EEEEEEECCSSGGGCCEECCCEEEEEESCG--------------------------------------------------
T ss_pred EEEEEEEecCCCCcceEEcCCEEEEEecCC--------------------------------------------------
Confidence 9999999986431 2233345553200
Q ss_pred ccceeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEEEe------
Q psy2776 653 ATTELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIF------ 723 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~------ 723 (803)
....+|.+ +..+....+.+|+.++|.|.+.|.|++ .+.|+++|.++....+.....
T Consensus 120 ---------------~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~ 184 (246)
T 4dzb_B 120 ---------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPA 184 (246)
T ss_dssp ---------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTT
T ss_pred ---------------CcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCccccccccccccc
Confidence 00113443 333444556779999999999997665 899999999986542211100
Q ss_pred --eCc---eEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 724 --DGE---NIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 724 --~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
++. ...|.|... ..+| +|.|+|.|.|......
T Consensus 185 ~~~g~~~~~s~l~i~~~-~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 185 LNDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp STTCCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBCTT
T ss_pred CCCCCEEEEEEEEECHH-HhccCCCeEEEEEEecCCCCc
Confidence 222 234888887 4567 9999999999877655
No 254
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.72 E-value=3.8e-17 Score=139.62 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=85.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC--CeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..||+|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|||.+|..+. ++.+...+...+|.|.++ +.+|+|.|+|.
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~ 81 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV-QKQDGGLYTLS 81 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSC-CGGGCEEEEEE
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCC-CccCCEEEEEE
Confidence 348999999999999999999999999999999999999999997654 577777788889999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|.|.+|.++.++.|.|+
T Consensus 82 a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 82 LGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEEEE
Confidence 99999999999999885
No 255
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.72 E-value=4.2e-17 Score=161.27 Aligned_cols=193 Identities=14% Similarity=0.185 Sum_probs=118.8
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.|....+.+|+++.|.|.+ +.|.+.+.|+|++.... ... +......
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~--~~~-~~~~~~~------------------------------ 53 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHES--PRL-LIKYASQ------------------------------ 53 (213)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSC--CEE-EEETTTE------------------------------
T ss_pred CCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCC--cEE-EEEEccc------------------------------
Confidence 3555667789999999999 78888999998632110 011 1100000
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
...+ ......+....+...|.|.+++.+|+|.|+|.|.+..+.....
T Consensus 54 --------------~~~~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~------------------ 100 (213)
T 3d9a_L 54 --------------SISG-IPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGG------------------ 100 (213)
T ss_dssp --------------ECTT-SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC------------------
T ss_pred --------------cccc-ccccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCC------------------
Confidence 0000 0001111223456689999999999999999999987643321
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCee
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAE 548 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~ 548 (803)
...|.|...+..|.+.+... ...+..|+.+.|.|.+.| .|++ .+.|+|+|..
T Consensus 101 -----------------------~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~ 154 (213)
T 3d9a_L 101 -----------------------GTKLEIKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE 154 (213)
T ss_dssp -----------------------CEEEEECCCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred -----------------------CEEEEEecCCCCceeEeECC---ChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCc
Confidence 22334433222222222111 112236899999999988 5555 8999999998
Q ss_pred ecCCCcE--EEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 549 ITDSKAC--RIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 549 i~~~~~~--~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
+..+... ......+ .+.|.|.++..+|+|.|+|.|.|..........+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 155 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred CcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 8765111 1111111 3589999999999999999999987765444443
No 256
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.72 E-value=2.4e-16 Score=152.53 Aligned_cols=166 Identities=9% Similarity=0.062 Sum_probs=118.7
Q ss_pred eEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..+..|+++.|+|.+ +.|.| .|.|++.+..+ .+ .........|.|.+++.+|+|.|.|.|.|..|.....+.
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ 90 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 90 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence 578899999999999 88888 99999965444 12 222356789999999999999999999999888888899
Q ss_pred EEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCee
Q psy2776 596 LQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLF 675 (803)
Q Consensus 596 l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~ 675 (803)
|.|..+| .+
T Consensus 91 ltV~~~P-----------------------------------------------------------------------~~ 99 (210)
T 1gsm_A 91 LLVYAFP-----------------------------------------------------------------------NQ 99 (210)
T ss_dssp EEEEBCC-----------------------------------------------------------------------SE
T ss_pred EEEEecC-----------------------------------------------------------------------CC
Confidence 9997744 22
Q ss_pred EeccceeEEecCCeEEEEEEEeec-CC----CceEEeeCCeeccCCCCe--EEE------eeC------ceEEEEEecCC
Q psy2776 676 IERFEEKTVKEKGTIRLMAKVKAS-PA----PSIVWFRNNKPLLSSPKK--REI------FDG------ENIILELKEAD 736 (803)
Q Consensus 676 ~~~~~~~~v~~g~~v~L~C~~~g~-p~----~~v~W~~~~~~l~~~~~~--~~~------~~~------~~~~L~i~~v~ 736 (803)
...... .+.+|+.+ |+|.+.|. |. ++|.|+|||.+|...... ... ..+ -.++|.+...
T Consensus 100 ~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~- 176 (210)
T 1gsm_A 100 LTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL- 176 (210)
T ss_dssp EEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCC-
T ss_pred cEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCC-
Confidence 221111 45567888 99999986 74 489999999999543210 110 001 1234555565
Q ss_pred CCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 737 SETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 737 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
..+|.+.|+|.|.+.+-.....-...+
T Consensus 177 ~~D~~~~~tC~a~~~L~~~~~~~~~~~ 203 (210)
T 1gsm_A 177 GTPVPPALYCQATMRLPGLELSHRQAI 203 (210)
T ss_dssp CSSCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cccCCceEEEEEEeeCCCCcccccccC
Confidence 556668999999998865554444443
No 257
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.72 E-value=5.1e-17 Score=160.67 Aligned_cols=86 Identities=15% Similarity=0.339 Sum_probs=63.6
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec-------------cceeE--EEecCeeEEEEecCCCCcc
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI-------------KGRNI--TYENNVARFTVVNCSESSE 209 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~--~~~~~~~~L~i~~v~~~d~ 209 (803)
+...+ .+.+.+|++++|.|.+.+.|.+.+.|+|.. ... ...++ ........|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (213)
T 3mj8_L 4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE 82 (213)
T ss_dssp BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC
Confidence 44445 678889999999999999999999999832 111 01122 2244567899999999999
Q ss_pred eEEEEEEEcCCcC---eeeEEEEEEee
Q psy2776 210 GRYTCKATNEAGT---AETSCTLLVQG 233 (803)
Q Consensus 210 G~Y~C~a~n~~g~---~~~s~~l~V~~ 233 (803)
|.|+|.+.|..+. ....+.|.|..
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~~~l~V~~ 109 (213)
T 3mj8_L 83 ADYYCQSWDGTNSAWVFGSGTKVTVLG 109 (213)
T ss_dssp EEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred EEEEEEeccCCcceeEEcCceEEEEeC
Confidence 9999999999872 33456677764
No 258
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=6.1e-18 Score=170.07 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=118.7
Q ss_pred ceEEeecceeEEEEEEcCcCC-C-eeEEeeCC--eee------------cCCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR-P-EISWMKNG--AEI------------TDSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~-~-~v~W~~~g--~~i------------~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|+++.|.|.+.+.+. + .+.|+|++ ..+ ....++.+........|.|.+++.+|+|.|+
T Consensus 28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 107 (234)
T 2j6e_L 28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYY 107 (234)
T ss_dssp CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEE
T ss_pred cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEE
Confidence 456788999999999988654 4 79999863 221 0124555555556679999999999999999
Q ss_pred EEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCcccee
Q psy2776 581 VTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTEL 657 (803)
Q Consensus 581 C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~ 657 (803)
|.|.|..+. ....+.|.|...
T Consensus 108 C~~~~~~~~~~~~~~~~~l~V~~~-------------------------------------------------------- 131 (234)
T 2j6e_L 108 CATWDDSLSAVIFGGGTKLTVLGQ-------------------------------------------------------- 131 (234)
T ss_dssp EEEEETTTTEEEECCCBCCCBCCC--------------------------------------------------------
T ss_pred EEEEcCCcceeEecCCEEEEEecC--------------------------------------------------------
Confidence 999998773 111223333211
Q ss_pred eeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeCCeeccCCCCeE---EEeeC---ceEE
Q psy2776 658 VALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNNKPLLSSPKKR---EIFDG---ENII 729 (803)
Q Consensus 658 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~~~l~~~~~~~---~~~~~---~~~~ 729 (803)
+..+|.+...+....+.+|+.++|.|.+.|.++ +.+.|++||.++..+.... ...++ ..+.
T Consensus 132 -----------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~ 200 (234)
T 2j6e_L 132 -----------PKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSY 200 (234)
T ss_dssp -----------CCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEE
T ss_pred -----------CCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEE
Confidence 112455544333333346889999999998644 3899999999986542110 00111 2357
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
|.|.++ ..+|+|.|+|.|.|..+....++
T Consensus 201 L~i~~~-~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 201 LSLTPE-QWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp ECCCGG-GTTTSCCEEEEEEBTTBCCCEEE
T ss_pred EEECHH-HcCCCCeEEEEEEeCCCceEEec
Confidence 999999 68999999999999988755444
No 259
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.71 E-value=2.1e-17 Score=157.00 Aligned_cols=155 Identities=16% Similarity=0.261 Sum_probs=112.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--Cc--------EEEEecCCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KA--------CRIFIDEETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--~~--------~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
...+.+|++++|.|.+.+ |.+.+.|+|++..+..- .. -++.....+++|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 466788999999999854 88999999988754311 00 01222334568999999999999999999998
Q ss_pred CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccC
Q psy2776 587 AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATL 666 (803)
Q Consensus 587 ~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~ 666 (803)
.| ...+.|.|..++
T Consensus 83 ~~--~~~~~L~V~~~~---------------------------------------------------------------- 96 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMV---------------------------------------------------------------- 96 (171)
T ss_dssp CS--CEEEEEEEECCC----------------------------------------------------------------
T ss_pred CC--cEEEEEEEECcC----------------------------------------------------------------
Confidence 87 677777775532
Q ss_pred CCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 667 ~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
..|.+...... ..|.|.+.|.|.|.+.|+++|..+....+ ..|.+.+ ..|+|.|+|
T Consensus 97 ----~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~~---------~~l~~~~---~~~~g~Y~C 152 (171)
T 1ccz_A 97 ----SKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLRQ---------KTMSYQW---TNLRAPFKC 152 (171)
T ss_dssp ----CCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEESS---------SEEEEEC---SCCSSCEEE
T ss_pred ----CCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCcc---------eEEEEec---cCCCceEEE
Confidence 13444322111 27999999999999999999998753322 1344443 579999999
Q ss_pred EEEccCcceeeeEEEE
Q psy2776 747 VATNELGSATHGARVT 762 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~ 762 (803)
.|+|.+|..+..+.|.
T Consensus 153 ~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 153 KAVNRVSQESEMEVVN 168 (171)
T ss_dssp EEEETTEEEEEEECCC
T ss_pred EEEcccCcccceeEEe
Confidence 9999999988766553
No 260
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.71 E-value=9.7e-17 Score=159.63 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=118.6
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---e-c--C-------------CCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---I-T--D-------------SKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i-~--~-------------~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|+++.|.|.+.+.+ .+.+.|+|++ .. + . . ..++.+..+ .+...|.|.++
T Consensus 9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (220)
T 1pz5_B 9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence 46788999999999999876 6899999853 21 1 0 0 245555432 34569999999
Q ss_pred ccCcCeEEEEEEEcCCCCe-E--EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 572 VRADTSTYTVTATNAAGST-S--LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~-s--~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+.+|+|.|.|.|.|..+.. . ..+.|.|...
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------------- 121 (220)
T 1pz5_B 89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSA----------------------------------------------- 121 (220)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSS-----------------------------------------------
T ss_pred CHHHCEEEEEEEecCCcccceECCCEEEEEccC-----------------------------------------------
Confidence 9999999999999976432 1 2345555321
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeecc--CCCCeEEEee
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLL--SSPKKREIFD 724 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~--~~~~~~~~~~ 724 (803)
...+|.+...+....+.+|+.++|.|.+.|. |.| .+.|++++..+. ...... ..
T Consensus 122 --------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~ 179 (220)
T 1pz5_B 122 --------------------TTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVL--QS 179 (220)
T ss_dssp --------------------CCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--ET
T ss_pred --------------------CCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcc--cC
Confidence 1125555544433456789999999999998 988 999999887421 011110 11
Q ss_pred C---ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 725 G---ENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 725 ~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
+ ....|.|..+ ..+| |.|+|.|.|..|....++.
T Consensus 180 ~~~~~~s~L~i~~~-~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 180 GFYSLSSLVTVPSS-TWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp TEEEEEEEEEECGG-GTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CeEEEEEEEEEcch-hcCC-ceEEEEEEECCccEeeeec
Confidence 1 2456899988 5555 9999999999998766543
No 261
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.71 E-value=1.8e-16 Score=164.94 Aligned_cols=202 Identities=12% Similarity=0.146 Sum_probs=126.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEe--cCCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFI--DEETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~--~~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|++ ..+. ...++.+.. .....+|.|.++..
T Consensus 31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 110 (291)
T 2gki_A 31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS 110 (291)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999999877 5789999853 1110 013444433 23457899999999
Q ss_pred CcCeEEEEEEEcCC-CCeE----EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 574 ADTSTYTVTATNAA-GSTS----LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~-g~~s----~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
+|+|.|.|.+.|.. |... ....|.|..+. + -..|
T Consensus 111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~----------------------------------~-------~~~~ 149 (291)
T 2gki_A 111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRG----------------------------------G-------GGSG 149 (291)
T ss_dssp GGCEEEEEEEECGGGTTCEEEECCCEEEEECC------------------------------------------------
T ss_pred HHCEEEEEEEeccccccccceeCCCcEEEEecCC----------------------------------c-------cccc
Confidence 99999999999874 2211 12345443300 0 0000
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC------ceEEeeCC--eec---c---
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP------SIVWFRNN--KPL---L--- 714 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~------~v~W~~~~--~~l---~--- 714 (803)
.. .+.....++.+...+....+.+|++++|.|.+.+.|.+ .+.|+|++ ..+ .
T Consensus 150 ~~--------------~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~ 215 (291)
T 2gki_A 150 GG--------------GSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWA 215 (291)
T ss_dssp -----------------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETT
T ss_pred cc--------------cCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEc
Confidence 00 00001114455555667789999999999999998876 89999963 211 1
Q ss_pred ------CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee-eeEEEEEEeeccCCCCCc
Q psy2776 715 ------SSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT-HGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 715 ------~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~pp~~~ 774 (803)
...++.+..++...+|.|.++ +.+|+|.|+|.|.|.....- .-..|.|+..+...|.+.
T Consensus 216 ~~~~~~~~~r~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~~~~~~~ 281 (291)
T 2gki_A 216 STRESGVPDRFTGSGSGTDFTLTISSV-QAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHHHHGLVPR 281 (291)
T ss_dssp TEECTTCCTTEEEEEETTEEEEEESSC-CGGGCEEEEEEEEETTEEEECCCEEEEEECC--------
T ss_pred ccCCCCcCCCEEEEecCCEEEEEECCC-CHHHCEEEEEEEccCCceEEcCCEEEEEEeeEcCCCcee
Confidence 145666666667789999999 79999999999999543221 233566654433344443
No 262
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.71 E-value=4.1e-17 Score=162.50 Aligned_cols=137 Identities=19% Similarity=0.332 Sum_probs=96.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+.. .... .+.|.|.
T Consensus 70 ~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~------------------------------------------~~~l~V~ 106 (222)
T 4i0k_A 70 GNASLRLQRVRVTDEGSYTCFVSIQD-FDSA------------------------------------------AVSLQVA 106 (222)
T ss_dssp TBCCEEECSCCGGGCSCEEEEEEECC-CCCC------------------------------------------CCCCCCC
T ss_pred CeEEEEECCcccccCEEEEEEEEeCC-CceE------------------------------------------EEEEEEE
Confidence 35679999999999999999999752 2221 4455565
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEee-CCeeecCCCcEEEEecCC--eEEEEEeeeccCcC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMK-NGAEITDSKACRIFIDEE--TSTIAIYSVVRADT 576 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~-~g~~i~~~~~~~~~~~~~--~~~L~i~~v~~~ds 576 (803)
.++..|.+.... ...+.+|+.+.|.|.+ .|.|.+.+.|++ ++..+............+ ...|.|.++..+|+
T Consensus 107 ~~~~~p~i~~~~----~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~ 182 (222)
T 4i0k_A 107 APYSKPSMTLEP----NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGAN 182 (222)
T ss_dssp BCCCCCEEECCC---------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTT
T ss_pred cCCCCCcEEeCC----CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCC
Confidence 555444433211 2457789999999999 889999999999 555554433222222222 24689999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEeeeEeE
Q psy2776 577 STYTVTATNAAGSTSLDLSLQVLGYIIQ 604 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~V~~~p~~ 604 (803)
|.|+|.|.|..|....++.|.|..+|+.
T Consensus 183 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 183 GTYSCLVRNPVLQQDAHGSVTITGQPLT 210 (222)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCC----
T ss_pred CEEEEEEECCCCCCceEEEEEEeCCccc
Confidence 9999999999999999999999988843
No 263
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.71 E-value=1.2e-16 Score=160.91 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=121.4
Q ss_pred ccccccccCCceeeeccccceeEEEEecCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 304 PAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 304 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
+++.+...... .+.+|++++|.|.+..+...+.|+|+|..+..... .
T Consensus 6 ~kP~i~~~P~~--~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~------~------------------------- 52 (242)
T 1p6f_A 6 PKPFIWAEPHF--MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP------K------------------------- 52 (242)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC------S-------------------------
T ss_pred CCCEEEeeCCC--ccCCCCcEEEEEeeCCCCcEEEEEECCCccccccc------c-------------------------
Confidence 34444443333 66789999999999555678999999876542100 0
Q ss_pred ccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeE
Q psy2776 384 KSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIV 463 (803)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~ 463 (803)
.........|.|.+++.+|+|.|+|.+.+..+....+.
T Consensus 53 --------------------------------~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~---------- 90 (242)
T 1p6f_A 53 --------------------------------PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN---------- 90 (242)
T ss_dssp --------------------------------SCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCC----------
T ss_pred --------------------------------ccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCc----------
Confidence 00011234588999999999999999987644332211
Q ss_pred EeeeccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEe
Q psy2776 464 VSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWM 543 (803)
Q Consensus 464 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~ 543 (803)
.+.|.|...+..|.+. ..+ ...+.+|++++|.|.+.+. .+.+.|+
T Consensus 91 ------------------------------~~~L~V~~~~~~P~i~--~~p--~~~v~~G~~vtL~C~~~~~-~~~~~w~ 135 (242)
T 1p6f_A 91 ------------------------------LLDLVVTEMYDTPTLS--VHP--GPEVISGEKVTFYCRLDTA-TSMFLLL 135 (242)
T ss_dssp ------------------------------CEEEEEECCSCCCEEE--EES--CSEEETTCEEEEEEECTTS-CSEEEEE
T ss_pred ------------------------------ceEEEeecccCCCceE--ccC--CCccCCCCcEEEEEecCCC-CCEEEEE
Confidence 2333343322122221 111 2457899999999998764 4699999
Q ss_pred eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCC---CCeEEEEEEEEeee
Q psy2776 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAA---GSTSLDLSLQVLGY 601 (803)
Q Consensus 544 ~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~---g~~s~s~~l~V~~~ 601 (803)
|+|..+.. ..........|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.+.
T Consensus 136 k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 136 KEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp ECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred ECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 99976653 12234467899999999999999999999864 34566677777663
No 264
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.70 E-value=2.2e-16 Score=161.83 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=118.9
Q ss_pred ceEEeecceeEEEEEEcCcC------CCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP------RPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p------~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+ |..+. ...++.+........|.|.++..+|+
T Consensus 14 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds 93 (264)
T 2gjj_A 14 SLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDL 93 (264)
T ss_dssp EEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred eEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHC
Confidence 57789999999999999887 678999985 22111 13466655555567999999999999
Q ss_pred eEEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 577 STYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 577 G~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.|.|.|..+. ......|.|..+|.... . +.+...
T Consensus 94 G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~---------------------------------------~-~~~~~~-- 131 (264)
T 2gjj_A 94 AVYYCQQYSNYPWTFGGGTRLEIKRGGGGSG---------------------------------------G-GGSGGG-- 131 (264)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEECC------------------------------------------------------
T ss_pred EEEEEEEecCCccEecCCEEEEEEcCCcccc---------------------------------------c-cccccc--
Confidence 9999999987543 22334666655320000 0 000000
Q ss_pred eeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeCC--ee---cc--------------
Q psy2776 656 ELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRNN--KP---LL-------------- 714 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~~--~~---l~-------------- 714 (803)
......++..+..+....+.+|++++|.|.+.+.|. +.+.|++++ .. +.
T Consensus 132 ----------~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~ 201 (264)
T 2gjj_A 132 ----------GSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQK 201 (264)
T ss_dssp -----------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGG
T ss_pred ----------ccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcc
Confidence 000000122222333457889999999999998874 789999963 21 11
Q ss_pred CCCCeEEEee--CceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 715 SSPKKREIFD--GENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 715 ~~~~~~~~~~--~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
...++.+..+ .....|.|.++ +.+|+|.|.|.|.|.
T Consensus 202 ~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 202 FKNKAAFTVDTSSSTAFMQLNSL-TSEDSADYYCVRSGN 239 (264)
T ss_dssp GTTTEEEEEETTTTEEEEEECSC-CGGGCEEEEEEEECS
T ss_pred cCCceEEEEcCCCCEEEEEECcC-CcccCEEEEEEEecC
Confidence 0345554432 35678999999 799999999999995
No 265
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=158.42 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=130.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCC--CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDS--KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+ .++.+......+.|.|.++..+|+|.|+|.|.|..|..+..+
T Consensus 27 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 106 (215)
T 3mtr_A 27 AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF 106 (215)
T ss_dssp EEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEE
Confidence 477889999999999999999999999999998876 456666666789999999999999999999999999999998
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|..+| .+|.
T Consensus 107 ~l~v~~~P--------------------------------------------------------------------~~p~ 118 (215)
T 3mtr_A 107 ILVQADTP--------------------------------------------------------------------SSPS 118 (215)
T ss_dssp EEEECCCC--------------------------------------------------------------------CCCE
T ss_pred EEEECCCC--------------------------------------------------------------------CCCc
Confidence 88886644 1333
Q ss_pred eEeccceeEEecCCeEEEEEEEe----ecCCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVK----ASPAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~----g~p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
.... ...+..+.|.|... |.|.. .+.|++++........+.+........|.|.++ ...|.|.|+|.|
T Consensus 119 ~~~~-----~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L-~~~~~y~~~~~A 192 (215)
T 3mtr_A 119 IDQV-----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGL-KPETTYAVRLAA 192 (215)
T ss_dssp EEEE-----EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECC-CTTCEEEEEEEE
T ss_pred ceEE-----EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCC-CCCCEEEEEEEE
Confidence 2221 23467889999742 23433 477888765421100000000111257999999 789999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|.+|....+..+.|+
T Consensus 193 ~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 193 LNGKGLGEISAASEFK 208 (215)
T ss_dssp EESSCBCCCCCCEEEE
T ss_pred EeCCcccCcccceeeE
Confidence 9999999888777775
No 266
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.70 E-value=1.3e-16 Score=157.51 Aligned_cols=186 Identities=13% Similarity=0.199 Sum_probs=114.9
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecC--eeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKG--KEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g--~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
|....+.+|++++|.|.+ +.|.+.+.|+|++ ..+ .. +......
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~----~~-~~~~~~~----------------------------- 52 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQP----KL-LIYKASN----------------------------- 52 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCC----EE-EEETTTE-----------------------------
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCe----EE-EEEcccc-----------------------------
Confidence 666778889999999999 7778899999852 221 11 1100000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
...+ ......+...++...|.|.+++.+|+|.|+|.|.+..+.....
T Consensus 53 ---------------~~~~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~----------------- 99 (210)
T 1lk3_L 53 ---------------LASG-VPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGA----------------- 99 (210)
T ss_dssp ---------------ECTT-CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC-----------------
T ss_pred ---------------ccCC-ccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCC-----------------
Confidence 0000 0000111223456689999999999999999999876533221
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCe
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGA 547 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~ 547 (803)
...|.|...+..|.+.+... ...+..|+.+.|.|.+.|. |++ .+.|+|+|.
T Consensus 100 ------------------------~~~l~V~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~ 152 (210)
T 1lk3_L 100 ------------------------GTKLELKRADAAPTVSIFPP---STEQLATGGASVVCLMNNFYPRDISVKWKIDGT 152 (210)
T ss_dssp ------------------------CEEEEECCCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ------------------------CEEEEEcCCCcCCeEEEECC---chhhccCCcEEEEEEEEeEeCCceEEEEEeCCc
Confidence 12333333222222222111 1112368999999999974 443 899999999
Q ss_pred eecCC-Cc-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEE
Q psy2776 548 EITDS-KA-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 548 ~i~~~-~~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
.+..+ .. .......+ .+.|.|.++..+|+|.|+|.|.|.......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (210)
T 1lk3_L 153 ERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV 204 (210)
T ss_dssp ECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred cCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence 88765 11 11111111 248999999999999999999998765433
No 267
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.70 E-value=1.4e-16 Score=159.41 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=115.1
Q ss_pred ceEEeecceeEEEEEEcCcCC----CeeEEeeCC--eee----c------------CCCcEEEEec--CCeEEEEEeeec
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR----PEISWMKNG--AEI----T------------DSKACRIFID--EETSTIAIYSVV 572 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~----~~v~W~~~g--~~i----~------------~~~~~~~~~~--~~~~~L~i~~v~ 572 (803)
...+.+|++++|.|.+.+.|. +.+.|+|++ ..+ . ...++.+..+ .....|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD 88 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence 467889999999999998875 889999852 211 0 0235555432 245799999999
Q ss_pred cCcCeEEEEEEEcCCCC-----e----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEE
Q psy2776 573 RADTSTYTVTATNAAGS-----T----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFA 643 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~-----~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 643 (803)
.+|+|.|.|.+.|..|. . ...+.|.|...
T Consensus 89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~------------------------------------------ 126 (228)
T 3bae_H 89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA------------------------------------------ 126 (228)
T ss_dssp GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC------------------------------------------
T ss_pred cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC------------------------------------------
Confidence 99999999999987651 1 12245555321
Q ss_pred ecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEE
Q psy2776 644 ENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKRE 721 (803)
Q Consensus 644 ~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~ 721 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+.......+
T Consensus 127 -------------------------~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~ 181 (228)
T 3bae_H 127 -------------------------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAV 181 (228)
T ss_dssp -------------------------CCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEE
T ss_pred -------------------------CCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCce
Confidence 1124555543333346789999999999987 887 9999999876421111111
Q ss_pred EeeC---ceEEEEEecCCCCCCceeEEEEEEccCcceeeeE
Q psy2776 722 IFDG---ENIILELKEADSETDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 722 ~~~~---~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
...+ ....|.|..+ ..+| |.|+|.|.|..|......
T Consensus 182 ~~~~~~~~~s~L~i~~~-~~d~-g~YtC~~~n~~~~~~~~~ 220 (228)
T 3bae_H 182 LQSDLYTLSSSVTVTSS-TWPS-ESITCNVAHPASSTKVDK 220 (228)
T ss_dssp EETTEEEEEEEEEEETT-TTTT-SCCEEEEEEGGGTEEEEE
T ss_pred eCCCcEEEEEEEEEEhh-hcCC-CcEEEEEEECCCCCCEEE
Confidence 1112 2356899988 5555 999999999999876443
No 268
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.70 E-value=1.1e-16 Score=159.85 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=115.1
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 46789999999999999876 6789999853 2110 1245555443 3467999999999
Q ss_pred CcCeEEEEEEEcCCC-----C---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 574 ADTSTYTVTATNAAG-----S---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-----~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
+|+|.|.|.|.|..| . ....+.|.|...+
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~------------------------------------------- 125 (225)
T 1op3_H 89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS------------------------------------------- 125 (225)
T ss_dssp GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS-------------------------------------------
T ss_pred hhCEEEEEEEecCCCccccccceeecCCEEEecccCC-------------------------------------------
Confidence 999999999999865 1 1123455554310
Q ss_pred CCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCC-CCeEEE
Q psy2776 646 SVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSS-PKKREI 722 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~-~~~~~~ 722 (803)
..+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+... ......
T Consensus 126 ------------------------~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~ 181 (225)
T 1op3_H 126 ------------------------TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQ 181 (225)
T ss_dssp ------------------------CBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEEC
T ss_pred ------------------------CcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeC
Confidence 113444332222235679999999999987 777 99999998764211 010111
Q ss_pred eeCc---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 723 FDGE---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.++. .+.|.|..+ ..+| |.|+|.|.|..+...
T Consensus 182 ~~g~~~~~s~L~i~~~-~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 182 SSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp TTSCEEEEEEEEEEGG-GTTC-CCCCEEEEEGGGTEE
T ss_pred CCCCEEEEEEEEEech-hcCC-CcEEEEEEcCCCCcc
Confidence 1222 346899988 5677 999999999877644
No 269
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.70 E-value=2.8e-16 Score=155.39 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=93.0
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec---------------cceeEEEecCeeEEEEecCCCCc
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI---------------KGRNITYENNVARFTVVNCSESS 208 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~---------------~~~~~~~~~~~~~L~i~~v~~~d 208 (803)
.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|+. ..+ ........++..+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3nl4_L 3 VMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECAD 82 (213)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred cEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHH
Confidence 4555567788999999999999999999999999953 110 01112233456689999999999
Q ss_pred ceEEEEEEEcCCcC---eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecc
Q psy2776 209 EGRYTCKATNEAGT---AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARW 285 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~---~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (803)
+|.|+|.+.|..+. ......|.|...+..
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~------------------------------------------------ 114 (213)
T 3nl4_L 83 AATYYCQSTYENPTYVSFGGGTEVGVKGDPVA------------------------------------------------ 114 (213)
T ss_dssp CEEEEEEECCSSTTTCEECCCEEEEEECCCBC------------------------------------------------
T ss_pred CEEEEEecCCCCceeEEeCCCeEEEEeCCCcC------------------------------------------------
Confidence 99999999998763 223355666442100
Q ss_pred ccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCceeeEEeecCeecccc
Q psy2776 286 TSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDIQVKWLKKGKEIKES 349 (803)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~i~W~~~g~~l~~~ 349 (803)
+.+....+. ..+.+|+.+.|.|.+ + .|.+.+.|+|+|..+..+
T Consensus 115 --------------------p~v~~~~~~-~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~ 159 (213)
T 3nl4_L 115 --------------------PTVLIFPPS-ADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTG 159 (213)
T ss_dssp --------------------CEEEEECCC-HHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSS
T ss_pred --------------------CeEEEeCCc-hhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCC
Confidence 000000111 122358899999999 6 899999999999988653
No 270
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.70 E-value=4.1e-16 Score=158.08 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=92.1
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|+|.|.|..+...... ...|.|
T Consensus 78 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~----------------------------------------~~~l~V 117 (247)
T 2ghw_B 78 KNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQ----------------------------------------GTLVTV 117 (247)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEEECC----------------------------------------CEEEEE
T ss_pred CCEEEEEECcCCHHHCEEEEEeeeccCCccccCC----------------------------------------ceEEEE
Confidence 3456899999999999999999998733222211 123333
Q ss_pred CCCCC----------CccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEee--CCeeec------------CCCcE
Q psy2776 500 QSPPQ----------QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEIT------------DSKAC 555 (803)
Q Consensus 500 ~~~p~----------~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~------------~~~~~ 555 (803)
..+|. .... .+........+.+|++++|.|.+.+.|.+.+.|+| +|..+. ...++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~ 196 (247)
T 2ghw_B 118 SSGGGGSGGGGSGGGGSET-TLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRF 196 (247)
T ss_dssp CSCC------------CCC-CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTE
T ss_pred ecccccccccccCCCCcce-EEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCE
Confidence 33211 0001 11112234668899999999999999999999999 555331 12455
Q ss_pred EEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEEEEe
Q psy2776 556 RIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVL 599 (803)
Q Consensus 556 ~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l~V~ 599 (803)
.+.......+|.|.++..+|+|.|+|.|.|..+.. .....|.|.
T Consensus 197 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 197 SGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 55545566789999999999999999999864332 233455554
No 271
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.70 E-value=8.1e-16 Score=153.26 Aligned_cols=175 Identities=13% Similarity=0.137 Sum_probs=117.4
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec--------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT--------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~--------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|+.+.|.|.+.+.+ .+.+.|+|+. .. +. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 46788999999999999876 4789999853 21 10 1135555443 2357999999999
Q ss_pred CcCeEEEEEEEcCCCC------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCC
Q psy2776 574 ADTSTYTVTATNAAGS------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSV 647 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~ 647 (803)
+|+|.|.|.+.|..|. ....+.|.|...
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~---------------------------------------------- 122 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG---------------------------------------------- 122 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSS----------------------------------------------
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccC----------------------------------------------
Confidence 9999999999987541 112235555321
Q ss_pred CCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEee-CCeeccCCCCe-EEEe
Q psy2776 648 GLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFR-NNKPLLSSPKK-REIF 723 (803)
Q Consensus 648 g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~-~~~~l~~~~~~-~~~~ 723 (803)
+..+|.+........+.+|+.++|.|.+.|. |.| .+.|++ +|..+.....+ ....
T Consensus 123 ---------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~ 181 (223)
T 1dee_B 123 ---------------------SASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLR 181 (223)
T ss_dssp ---------------------CCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEE
T ss_pred ---------------------CCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCcccc
Confidence 1124555432222345789999999999987 877 999999 88887540000 0001
Q ss_pred eCc---eEEEEEecCCCC--CCceeEEEEEEccCcceeeeE
Q psy2776 724 DGE---NIILELKEADSE--TDAGDYKVVATNELGSATHGA 759 (803)
Q Consensus 724 ~~~---~~~L~i~~v~~~--~D~G~Y~C~a~N~~G~~~~~~ 759 (803)
++. ...|.|... .. +|.|.|+|.|.|..|.....+
T Consensus 182 ~~~~~~~s~L~i~~~-~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 182 GGKYAATSQVLLPSK-DVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp TTEEEEEEEEEEECT-TTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEEcHH-HhccCCCCEEEEEEEeCCCCCcccc
Confidence 121 345888776 44 789999999999999876544
No 272
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.69 E-value=2.5e-17 Score=161.63 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=59.3
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCc-EEEEecCCeEEEEEeee-ccCcCeEEEEEEEcCCCC-eEEEEEEE
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKA-CRIFIDEETSTIAIYSV-VRADTSTYTVTATNAAGS-TSLDLSLQ 597 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~-~~~~~~~~~~~L~i~~v-~~~dsG~Y~C~a~n~~g~-~s~s~~l~ 597 (803)
.+|+++.|.|. |.|.|.+.|+|+|..+....+ ..+.. .+..|.|.++ ..+|+|.|+|.|.|..|. .+..+.|.
T Consensus 126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~ 201 (204)
T 1sy6_A 126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS--DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201 (204)
T ss_dssp EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE--ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec--CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence 38999999999 889999999999998865421 11111 2468999999 999999999999999997 35666666
Q ss_pred Ee
Q psy2776 598 VL 599 (803)
Q Consensus 598 V~ 599 (803)
|.
T Consensus 202 ~~ 203 (204)
T 1sy6_A 202 AR 203 (204)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 273
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.69 E-value=1.9e-16 Score=157.44 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=118.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec--------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT--------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~--------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. .. +. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (220)
T 2fbj_H 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence 46788999999999999876 5789999853 21 10 1245555543 3457999999999
Q ss_pred CcCeEEEEEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 574 ADTSTYTVTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
+|+|.|.|.+.|..+. ....+.|.|...+
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~------------------------------------------------ 120 (220)
T 2fbj_H 89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAES------------------------------------------------ 120 (220)
T ss_dssp GGCEEEEEEEEETTTEEEEECCCEEEEECSSC------------------------------------------------
T ss_pred hhCEEEEEEEeccccccceecCCEEEEecCCC------------------------------------------------
Confidence 9999999999987542 1123455554311
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC--CceEEeeCCeeccC-CCCeEEEeeCc
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA--PSIVWFRNNKPLLS-SPKKREIFDGE 726 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~--~~v~W~~~~~~l~~-~~~~~~~~~~~ 726 (803)
..+|.+...+ ...+.+|+.++|.|.+.|. |. +.|.|++++..+.. ........++.
T Consensus 121 -------------------~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~ 180 (220)
T 2fbj_H 121 -------------------ARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGR 180 (220)
T ss_dssp -------------------CBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSC
T ss_pred -------------------CCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCC
Confidence 1255555443 3446789999999999987 76 79999999877521 11111111222
Q ss_pred ---eEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 727 ---NIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 727 ---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
...|.|... ..+|.|.|+|.|.|..|...
T Consensus 181 ~~~~s~L~i~~~-~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 181 YTMSNQLTLPAV-ECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEEEEEECGG-GSCTTCEEEEEEEETTSCCE
T ss_pred EEEEEEEEECHH-HcCCCCeEEEEEEcCCCceE
Confidence 235889888 57899999999999999864
No 274
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.69 E-value=9.3e-17 Score=153.94 Aligned_cols=153 Identities=12% Similarity=0.239 Sum_probs=110.2
Q ss_pred ceEEeecceeEEEEEEcC-cCCCeeEEeeC-Ceeec------------CC--CcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFG-FPRPEISWMKN-GAEIT------------DS--KACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~-g~~i~------------~~--~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
...+.+|++++|.|.+.+ .+.+.+.|+|+ +..+. .. .++.+ +..+..|.|.+++.+|+|.|+
T Consensus 8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEEE
Confidence 577899999999999754 34689999994 33221 11 23332 235578999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeee
Q psy2776 581 VTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVAL 660 (803)
Q Consensus 581 C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~ 660 (803)
|.+.+.. .....+.|.|..++
T Consensus 86 C~v~~~~-~~~~~~~L~V~~~~---------------------------------------------------------- 106 (180)
T 2dru_A 86 MRMLHET-EDQWKITMEVYEMV---------------------------------------------------------- 106 (180)
T ss_dssp EEEESSS-EEEEEEEEEEECCC----------------------------------------------------------
T ss_pred EEEEcCC-eEEEEEEEEEECCC----------------------------------------------------------
Confidence 9998876 56677777775522
Q ss_pred eecccCCCCCCCCeeEeccceeEEecCCeEEEEEEE-eecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCC
Q psy2776 661 ATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKV-KASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSET 739 (803)
Q Consensus 661 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~ 739 (803)
..|.+.. .++.++|.|.+ .| |.|.+.|++++.++. .. ...+|.+.. .+
T Consensus 107 ----------~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-------~~--~~~~l~~~~---~~ 155 (180)
T 2dru_A 107 ----------SKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLR-------SL--RQKTMSYQW---TN 155 (180)
T ss_dssp ----------CCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEE-------EE--SSSEEEEEC---SC
T ss_pred ----------CCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECc-------CC--CCCEEEEEE---hh
Confidence 1344332 24569999999 66 999999999999874 11 122455532 58
Q ss_pred CceeEEEEEEccCcceeeeEEE
Q psy2776 740 DAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
|+|.|+|.|.|.+|..+..+.+
T Consensus 156 d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 156 LRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp CSSCEEEEEEETTEEEEEEECC
T ss_pred cCccEEEEEecCcCccccceeE
Confidence 9999999999999998765543
No 275
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.69 E-value=2e-16 Score=161.55 Aligned_cols=85 Identities=15% Similarity=0.039 Sum_probs=62.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee--CCeeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.+.+.|.+.+.|+| +|..+. ...++.+........|.|.++..+|+|.|+|.
T Consensus 148 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 227 (257)
T 1f3r_B 148 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCY 227 (257)
T ss_dssp EECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEE
T ss_pred EEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEE
Confidence 4567889999999999999989999999 555331 12455554445567999999999999999999
Q ss_pred EEcCCCCeEEEEEEEEeee
Q psy2776 583 ATNAAGSTSLDLSLQVLGY 601 (803)
Q Consensus 583 a~n~~g~~s~s~~l~V~~~ 601 (803)
|.|..........|.|...
T Consensus 228 a~n~~~~~g~gt~l~V~~~ 246 (257)
T 1f3r_B 228 QYNNGYTFGAGTKLELKAA 246 (257)
T ss_dssp EESSSEEECCCCEECCSSS
T ss_pred EeCCCCeECCCEEEEEeCC
Confidence 9997511222345555543
No 276
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.69 E-value=5.1e-18 Score=170.57 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=96.0
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee---c---------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI---T---------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i---~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|+++.|.|.+.+.|.+.+.|+|++ ..+ . ...++.+.......+|.|.+++.+|+|.|.|.
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 111 (233)
T 3bqu_C 32 SLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCL 111 (233)
T ss_dssp BC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEE
T ss_pred eEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEE
Confidence 567889999999999999888899999853 211 0 01233222222345899999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeee
Q psy2776 583 ATNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALA 661 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~ 661 (803)
|.|..+.. .....|.|..
T Consensus 112 ~~~~~~~~~~~~~~l~V~~------------------------------------------------------------- 130 (233)
T 3bqu_C 112 QSDNLPYTFGGGTNLEIKR------------------------------------------------------------- 130 (233)
T ss_dssp ECSSSSCCBCCCCBC---C-------------------------------------------------------------
T ss_pred EecCCceeecCCEEEEEeC-------------------------------------------------------------
Confidence 99876532 1122333322
Q ss_pred ecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecC-CC-ceEEeeCCeeccCCCCeE--EE--eeC---ceEEEEE
Q psy2776 662 THATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASP-AP-SIVWFRNNKPLLSSPKKR--EI--FDG---ENIILEL 732 (803)
Q Consensus 662 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p-~~-~v~W~~~~~~l~~~~~~~--~~--~~~---~~~~L~i 732 (803)
...+|.+...+....+.+|+.++|.|.+.|.+ .+ .+.|+|+|.++..+.... .. .++ ....|.|
T Consensus 131 -------~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i 203 (233)
T 3bqu_C 131 -------ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL 203 (233)
T ss_dssp -------CCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEE
T ss_pred -------CCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEE
Confidence 11256555544333344799999999999864 43 799999999876541110 01 111 2356889
Q ss_pred ecCCCCCCceeEEEEEEccCcce
Q psy2776 733 KEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 733 ~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
..+ ..+|+|.|+|.|.|.....
T Consensus 204 ~~~-~~~d~g~Y~C~a~n~~~~~ 225 (233)
T 3bqu_C 204 TKD-EYERHNSYTCEATHKTSTS 225 (233)
T ss_dssp EHH-HHHTCCCEEEEEEEC---C
T ss_pred CHH-HhCCCCCEEEEEEeCCCCc
Confidence 998 5789999999999976553
No 277
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.69 E-value=3.6e-16 Score=160.69 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=116.9
Q ss_pred ceEEeecceeEEEEEEcCcC-----CCeeEEeeCC--ee---ec---------CCCcEEEEecCCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP-----RPEISWMKNG--AE---IT---------DSKACRIFIDEETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p-----~~~v~W~~~g--~~---i~---------~~~~~~~~~~~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|++ .. +. ...++.+........|.|.++..+|+|
T Consensus 24 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 103 (268)
T 1x9q_A 24 SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLG 103 (268)
T ss_dssp EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCE
Confidence 46678999999999999887 4889999853 21 11 134566554556679999999999999
Q ss_pred EEEEEEEcCCCC-eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccce
Q psy2776 578 TYTVTATNAAGS-TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTE 656 (803)
Q Consensus 578 ~Y~C~a~n~~g~-~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~ 656 (803)
.|.|.|.|..+. ......|.|...+..
T Consensus 104 ~Y~C~~~~~~~~~~~~~~~L~V~~~~~~---------------------------------------------------- 131 (268)
T 1x9q_A 104 VYFCSQSTHVPWTFGGGTKLEIKSSADD---------------------------------------------------- 131 (268)
T ss_dssp EEEEEECSSSSCEECCCEEEC-----------------------------------------------------------
T ss_pred EEEEEEecCCCceEcCCEEEEEccCccC----------------------------------------------------
Confidence 999999987543 223345555442200
Q ss_pred eeeeeecccCCCCCCCC--------------eeEeccceeEEecCCeEEEEEEEeecCC--CceEEeeC--Ceec-----
Q psy2776 657 LVALATHATLGSPGQAP--------------LFIERFEEKTVKEKGTIRLMAKVKASPA--PSIVWFRN--NKPL----- 713 (803)
Q Consensus 657 ~~~~~~~~~~~~~~~~p--------------~~~~~~~~~~v~~g~~v~L~C~~~g~p~--~~v~W~~~--~~~l----- 713 (803)
..+..+| .++..+....+.+|++++|.|.+.|.|. +.+.|+++ +..+
T Consensus 132 ----------~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~ 201 (268)
T 1x9q_A 132 ----------AKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQ 201 (268)
T ss_dssp ---------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEE
T ss_pred ----------CCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEE
Confidence 0000011 1333445678999999999999998864 78999985 2221
Q ss_pred --------------cCCCCeEEEeeC--ceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 714 --------------LSSPKKREIFDG--ENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 714 --------------~~~~~~~~~~~~--~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
....++.+..+. ....|.|.++ +.+|+|.|+|.|.|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 202 FRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNL-RVEDTGIYYCTGASY 254 (268)
T ss_dssp ECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSC-CGGGCEEEEEEEEET
T ss_pred EcccccccccccCCccCCeEEEEEeCCCCEEEEEECCC-CHHHCEEEEEEEccC
Confidence 123466655442 4678999999 799999999999985
No 278
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=154.01 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=81.8
Q ss_pred eeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCC
Q psy2776 422 VARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQS 501 (803)
Q Consensus 422 ~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 501 (803)
...|+|.+++.+|+|.|+|.+.+..+.... .+.|.|..
T Consensus 69 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~------------------------------------------~~~L~V~~ 106 (193)
T 2if7_A 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLS------------------------------------------SYTLRILR 106 (193)
T ss_dssp TCCEEECSCCGGGCEEEEEEEECSSCEEEE------------------------------------------EEEEEEEC
T ss_pred CeEEEECCCCcccCceEEEEEEecCCCeEE------------------------------------------EEEEEEEc
Confidence 456999999999999999999998776443 34455554
Q ss_pred CCCCccceeeeccccceEEeecc-eeEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccC-cCeE
Q psy2776 502 PPQQPAIKLVDSNLKSQRLSVKS-QWKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRA-DTST 578 (803)
Q Consensus 502 ~p~~~~~~~~~~~~~~~~v~~g~-~v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~-dsG~ 578 (803)
+|..|.+... ...+..|. .+.|.|.+.|. |.|.+.|+++|..+..+ ..|.|.....+ |+|.
T Consensus 107 ~~~~p~i~~~-----~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~-----------~~l~i~~~~~~~d~G~ 170 (193)
T 2if7_A 107 QLRNIQVTNH-----SQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ-----------PNLTVSWDPRISSEQD 170 (193)
T ss_dssp CCEEEEEEEC-----CC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS-----------SEEEEEECTTTCSCCE
T ss_pred cCCCCeEecC-----ceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC-----------CeEEEEeccCcCCCCc
Confidence 4433333211 11223465 89999999985 47899999999876432 34666555554 8999
Q ss_pred EEEEEEcCCCCeEEEEE
Q psy2776 579 YTVTATNAAGSTSLDLS 595 (803)
Q Consensus 579 Y~C~a~n~~g~~s~s~~ 595 (803)
|+|.|.|..|..+..+.
T Consensus 171 Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 171 YTCIAENAVSNLSFSVS 187 (193)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEECCCCccccccc
Confidence 99999999998766543
No 279
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.68 E-value=1.6e-16 Score=155.64 Aligned_cols=132 Identities=17% Similarity=0.288 Sum_probs=90.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.|.+..|....... ...+.|.|.
T Consensus 63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~-------------------------------------~~~~~l~V~ 105 (201)
T 1dr9_A 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREH-------------------------------------LAEVTLSVK 105 (201)
T ss_dssp TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEE-------------------------------------EEEEEEEEE
T ss_pred CCcEEEEecccchhCeEEEEEEEcCCCCcccccc-------------------------------------ccEEEEEEc
Confidence 3457999999999999999999997654432000 013444555
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEc-CcCCCeeEEeeCCeeecCCCcEEEEecCC--e-EEEEEeeeccCcC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF-GFPRPEISWMKNGAEITDSKACRIFIDEE--T-STIAIYSVVRADT 576 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~-~~L~i~~v~~~ds 576 (803)
.++..|.+... ....|+.+.|.|.+. |.|.|.+.|+++|..+..... .+..... . ....+..+..+|.
T Consensus 106 ~~~~~p~~~~~-------~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~ 177 (201)
T 1dr9_A 106 ADFPTPSISDF-------EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTTN 177 (201)
T ss_dssp CCCCCCEEEEE-------ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEEECTTTCCEEEEEEEEEETTSC
T ss_pred CCCCCCceEec-------cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccc-eEEecCCCcEEEEEEEEEEEecCC
Confidence 54433333221 123488999999995 999999999999998875432 3333222 2 2223456677999
Q ss_pred eEEEEEEEcCCCCeEEEEEEE
Q psy2776 577 STYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 577 G~Y~C~a~n~~g~~s~s~~l~ 597 (803)
|.|+|.|.|..|..+..+.+.
T Consensus 178 g~Y~C~a~n~~~~~s~~~~~~ 198 (201)
T 1dr9_A 178 HSFMCLIKYGHLRVNQTFNWN 198 (201)
T ss_dssp EEEEEEEEETTCCEEEEEEEC
T ss_pred CEEEEEEecCcceeeeEEecc
Confidence 999999999999988776653
No 280
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.68 E-value=2.4e-16 Score=156.16 Aligned_cols=177 Identities=12% Similarity=0.061 Sum_probs=111.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---e-------------cCCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---I-------------TDSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i-------------~~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
...+.+|++++|.|.+.+. +.+.+.|+|.. .. + ....++.+........|.|.+++.+|+
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 87 (215)
T 3nl4_H 8 GRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTTEDT 87 (215)
T ss_dssp CCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCGGGC
T ss_pred CEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCcccC
Confidence 4678899999999999874 35789998742 11 1 012455555555667899999999999
Q ss_pred eEEEEEEEcCCCC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 577 STYTVTATNAAGS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 577 G~Y~C~a~n~~g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
|.|.|.+.|..+. ......|.|...
T Consensus 88 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~--------------------------------------------------- 116 (215)
T 3nl4_H 88 ATYFCVRKYGSEWGGDLWGPGTLVTVSSG--------------------------------------------------- 116 (215)
T ss_dssp EEEEEEEECSSSSCEEEECCCEEEEECSS---------------------------------------------------
T ss_pred EEEEEEEecCCCccceEEcCCEEEEEeCC---------------------------------------------------
Confidence 9999999998653 222334544321
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEEEe-eCceEE
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREIF-DGENII 729 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~~-~~~~~~ 729 (803)
...+|.+...+....+.+|+.++|.|.+.|.|++ .+.|+++|..+.......... ++....
T Consensus 117 ----------------~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~ 180 (215)
T 3nl4_H 117 ----------------QPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSL 180 (215)
T ss_dssp ----------------CCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE
T ss_pred ----------------CcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeEecCceECCCCCEEE
Confidence 1125555533444456679999999999997543 577999997553222111222 233222
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
.....+ ...| |.|+|.|.|..|.....+.|.
T Consensus 181 ~s~l~v-~~~d-g~ytC~v~~~~~~~~~~~~l~ 211 (215)
T 3nl4_H 181 SSVVSV-TSSS-QPVTCNVAHPATNTKVDKTVA 211 (215)
T ss_dssp EEEEEE-CC----CCEEEEEEGGGTEEEEEECC
T ss_pred EEEEEE-eccC-CEEEEEEEeCCCCcceEEecC
Confidence 222344 4567 999999999999877655544
No 281
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.68 E-value=8.7e-17 Score=165.24 Aligned_cols=129 Identities=16% Similarity=0.298 Sum_probs=91.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|.|.+++.+|+|.|+|.+.+..+...... .+.|.|.
T Consensus 82 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~----------------------------------------~~~l~V~ 121 (268)
T 3mj6_A 82 NDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK----------------------------------------PVELWVL 121 (268)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTCCCEEEE----------------------------------------EEEEEEE
T ss_pred CEEEEEECCCCHhHCEEEEEEEEecCCcceEEE----------------------------------------EEEEEEe
Confidence 346799999999999999999998655443321 2222222
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE---cCcCCCeeEEeeC-CeeecCCC---------------------cE
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY---FGFPRPEISWMKN-GAEITDSK---------------------AC 555 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~---~g~p~~~v~W~~~-g~~i~~~~---------------------~~ 555 (803)
|..| ....+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+.... +.
T Consensus 122 --~~~p---------~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 190 (268)
T 3mj6_A 122 --PEEP---------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRV 190 (268)
T ss_dssp --CCCC---------SEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTE
T ss_pred --ccCC---------CccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccce
Confidence 2111 24678899999999999 6779999999994 32211100 11
Q ss_pred EEEe--cCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 556 RIFI--DEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 556 ~~~~--~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.+.. ......|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 191 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp EECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 1100 12457899999999999999999999999999999998854
No 282
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.68 E-value=3.5e-16 Score=155.23 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=62.1
Q ss_pred eeeccCcCeeeecCCcEEEEEEECcc-CCCeeEEEEcCe--ec--------------c---ceeEEE--ecCeeEEEEec
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGV-PTPDIKWYKDDS--LI--------------K---GRNITY--ENNVARFTVVN 203 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~-p~p~i~W~~~~~--~~--------------~---~~~~~~--~~~~~~L~i~~ 203 (803)
.+...+ .+.+.+|++++|.|.+.+. |.+.+.|+|... .. . ..++.. .....+|.|.+
T Consensus 3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (218)
T 3s96_B 3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN 81 (218)
T ss_dssp SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence 344455 6788999999999999998 889999999321 00 0 012221 34567899999
Q ss_pred CCCCcceEEEEEEEcCCcC-----eeeEEEEEEee
Q psy2776 204 CSESSEGRYTCKATNEAGT-----AETSCTLLVQG 233 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~-----~~~s~~l~V~~ 233 (803)
++.+|+|.|+|.+.|..|. ......|.|..
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~ 116 (218)
T 3s96_B 82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG 116 (218)
T ss_dssp CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence 9999999999999998762 22245666654
No 283
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.68 E-value=9.4e-17 Score=158.04 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=109.2
Q ss_pred EeecceeEEEEEEcCcC---C-CeeEEeeCCeeecCCCc-EEEEecC----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFP---R-PEISWMKNGAEITDSKA-CRIFIDE----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p---~-~~v~W~~~g~~i~~~~~-~~~~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+++.|.|.+.|.| . +.+.|+|++..+..... ....... ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999999885 2 48999999987653210 0000011 13579999999999999999999988764
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.+.. ...
T Consensus 95 ~~~~~v~~~~-------------------------------------------------------------------~~~ 107 (207)
T 2vol_A 95 PIEKTISKTK-------------------------------------------------------------------GRP 107 (207)
T ss_dssp CEEEEECCCC-------------------------------------------------------------------CCC
T ss_pred ceEEEeccCC-------------------------------------------------------------------CCC
Confidence 2222221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC--eEEEeeCc---eEEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK--KREIFDGE---NIILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|. |. +.+.|++||.++..... .....++. ...|.|... ..+|.|.
T Consensus 108 ~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~-~~~~~g~ 186 (207)
T 2vol_A 108 KAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKS-NWEAGNT 186 (207)
T ss_dssp BCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHH-HHSSCCE
T ss_pred cCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHH-HcCCCCE
Confidence 25555444333223359999999999985 55 38999999998754321 11122232 234667665 3468999
Q ss_pred EEEEEEccCcc
Q psy2776 744 YKVVATNELGS 754 (803)
Q Consensus 744 Y~C~a~N~~G~ 754 (803)
|+|.|.|....
T Consensus 187 ytC~a~n~~l~ 197 (207)
T 2vol_A 187 FTCSVLHEGLH 197 (207)
T ss_dssp EEEEEECTTSG
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 284
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.67 E-value=6.5e-16 Score=152.45 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=60.3
Q ss_pred eccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceec-------------ccee--EEEecCeeEEEEecCCCCcce
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLI-------------KGRN--ITYENNVARFTVVNCSESSEG 210 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~-------------~~~~--~~~~~~~~~L~i~~v~~~d~G 210 (803)
..++ ...+.+|++++|.|.+. |.+.+.|+|+ +..+ ...+ ........+|.|.+++.+|+|
T Consensus 5 ~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 81 (211)
T 3tv3_L 5 TQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEA 81 (211)
T ss_dssp BCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred EeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCE
Confidence 3344 67788999999999998 8889999994 2211 0112 222445678999999999999
Q ss_pred EEEEEEEcCCcC--eeeEEEEEEee
Q psy2776 211 RYTCKATNEAGT--AETSCTLLVQG 233 (803)
Q Consensus 211 ~Y~C~a~n~~g~--~~~s~~l~V~~ 233 (803)
.|+|.+.|..+. ......|.|..
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~~l~V~~ 106 (211)
T 3tv3_L 82 VYYCGSLVGNWDVIFGGGTKLTVLG 106 (211)
T ss_dssp EEEEEEEETTTEEEECCCEEEEECC
T ss_pred EEEEEEecCCCceeECCCceEEEeC
Confidence 999999998872 33446666653
No 285
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.67 E-value=1.2e-15 Score=155.40 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=93.9
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|+|.+.+..|....... ...+.|.|
T Consensus 76 ~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~-------------------------------------~~~~~L~V 118 (256)
T 1nqb_A 76 SSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYW-------------------------------------GQGTTVTV 118 (256)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEE-------------------------------------CCCEEEEE
T ss_pred CCEEEEEECcCChhhCEEEEEEEeeccCccceeEE-------------------------------------cCceeeee
Confidence 34678999999999999999999998653100000 00233444
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC-----eeEEee--CCeeec------------CCCcEEEEec
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP-----EISWMK--NGAEIT------------DSKACRIFID 560 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~-----~v~W~~--~g~~i~------------~~~~~~~~~~ 560 (803)
..+|.+. ..+....+.+|++++|.|.+.+.|++ .+.|+| +|..+. ...++.+...
T Consensus 119 ~~~~~v~------~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~ 192 (256)
T 1nqb_A 119 SSDIELT------QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS 192 (256)
T ss_dssp CCCCCEE------EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE
T ss_pred cccccEE------ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEcc
Confidence 4443211 11234678899999999999998875 999999 565441 1245555545
Q ss_pred CCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEeee
Q psy2776 561 EETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVLGY 601 (803)
Q Consensus 561 ~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~~~ 601 (803)
.....|.|.++..+|+|.|+|.|.|.... ......|.|..+
T Consensus 193 ~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~ 234 (256)
T 1nqb_A 193 GTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA 234 (256)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred CCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence 56679999999999999999999986433 223445666544
No 286
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.67 E-value=9.1e-17 Score=159.53 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=109.1
Q ss_pred EeecceeEEEEEEcCc---CC-CeeEEeeCCeeecCCCcEEEEec-C----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGF---PR-PEISWMKNGAEITDSKACRIFID-E----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~---p~-~~v~W~~~g~~i~~~~~~~~~~~-~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+.+.|.|.+.|. |+ +.+.|+|++..+........... . ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 6789999999999987 44 78999999988764321111111 1 13579999999999999999999987654
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.... ...
T Consensus 103 ~~~~~v~~~~-------------------------------------------------------------------~~~ 115 (218)
T 2rgs_A 103 PIERTISKIK-------------------------------------------------------------------GLV 115 (218)
T ss_dssp CEEEEECCCC-------------------------------------------------------------------CCC
T ss_pred cceEEEeecC-------------------------------------------------------------------CCC
Confidence 1111111000 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEE--EeeCce---EEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKRE--IFDGEN---IILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~--~~~~~~---~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+......+|+.++|.|.+.| .|.+ .|.|+++|.++........ ..++.. ..|.|... ..+|.|.
T Consensus 116 ~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~-~~~d~g~ 194 (218)
T 2rgs_A 116 RAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTS-KWEKTDS 194 (218)
T ss_dssp BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHH-HHHHCSC
T ss_pred CCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHH-HcCCCCe
Confidence 2555544333322235999999999999 5766 8999999998753221111 122322 23556554 2346999
Q ss_pred EEEEEEccCcce
Q psy2776 744 YKVVATNELGSA 755 (803)
Q Consensus 744 Y~C~a~N~~G~~ 755 (803)
|+|.|.|.....
T Consensus 195 YtC~a~n~~l~~ 206 (218)
T 2rgs_A 195 FSCNVRHEGLKN 206 (218)
T ss_dssp EEEEEECTTSGG
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 287
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.67 E-value=4.7e-16 Score=153.63 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=84.9
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.+.+..+..... ...|.
T Consensus 69 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~ 107 (212)
T 1q0x_L 69 IGDKAALTITGAQTEDEAIYFCALWSNNKLVFGG-----------------------------------------GTKLT 107 (212)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEECSSCEEECC-----------------------------------------CEEEE
T ss_pred eCCEEEEEECCCCccCCEEEEEEEecCchhhcCC-----------------------------------------CeEEE
Confidence 3456789999999999999999999976532221 22233
Q ss_pred cCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEE-EEecCC-----eEEEEEe
Q psy2776 499 IQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACR-IFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~-~~~~~~-----~~~L~i~ 569 (803)
|...+ ..|.+.+... ...+..|+.+.|.|.+.|.+++ .+.|+|+|..+..+.... .....+ .+.|.|.
T Consensus 108 V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~ 184 (212)
T 1q0x_L 108 VLGQPKSSPTVTLFPP---SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLT 184 (212)
T ss_dssp ECCSCCBCCEEEEECC---CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEE
T ss_pred EecCCCCCCeeEEeCC---CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEc
Confidence 32211 1122221111 1123458899999999986543 899999999887652211 111111 2579999
Q ss_pred eeccCcCeEEEEEEEcCCCCeEE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTSL 592 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s~ 592 (803)
++..+|+|.|+|.|.|.......
T Consensus 185 ~~~~~d~g~Y~C~a~n~~~~~~~ 207 (212)
T 1q0x_L 185 ARAWERHSSYSCQVTHEGHSSNK 207 (212)
T ss_dssp HHHHTTCCEEEEEEEETTEEEEE
T ss_pred HHHccCCCcEEEEEEeCCcceee
Confidence 99999999999999998655433
No 288
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.66 E-value=1.7e-15 Score=151.91 Aligned_cols=179 Identities=15% Similarity=0.164 Sum_probs=114.4
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---ec-------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---IT-------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i~-------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. .. +. ...++.+..+ .+...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (232)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence 45688999999999998875 5789999853 21 10 1245555442 34579999999999
Q ss_pred cCeEEEEEEEcCC--CC----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCC
Q psy2776 575 DTSTYTVTATNAA--GS----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVG 648 (803)
Q Consensus 575 dsG~Y~C~a~n~~--g~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g 648 (803)
|+|.|.|.+.+.. +. ......|.|...
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~----------------------------------------------- 121 (232)
T 1dn0_B 89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSG----------------------------------------------- 121 (232)
T ss_dssp GCEEEEEEECSSTTSCSCCSEECCCEEEEECSS-----------------------------------------------
T ss_pred cCEEEEEEEecCCcCCchhhhcccceEEEEccC-----------------------------------------------
Confidence 9999999998422 11 112345665431
Q ss_pred CCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecC-CeEEEEEEEeec-CCC-ceEEee-CCeeccCCCCe-EEEe
Q psy2776 649 LGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEK-GTIRLMAKVKAS-PAP-SIVWFR-NNKPLLSSPKK-REIF 723 (803)
Q Consensus 649 ~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g-~~v~L~C~~~g~-p~~-~v~W~~-~~~~l~~~~~~-~~~~ 723 (803)
+..+|.+........+..| +.++|.|.+.|. |.| .+.|++ ||..+.....+ ....
T Consensus 122 --------------------~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~ 181 (232)
T 1dn0_B 122 --------------------SASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLR 181 (232)
T ss_dssp --------------------CCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEE
T ss_pred --------------------CCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCcccc
Confidence 1124544432222234578 999999999987 877 999999 98887540000 0011
Q ss_pred eCc---eEEEEEecCCCC--CCceeEEEEEEccCcceeeeEEEEE
Q psy2776 724 DGE---NIILELKEADSE--TDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 724 ~~~---~~~L~i~~v~~~--~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.+. ...|.|... .. +|.|.|+|.|.|..|.......+.|
T Consensus 182 ~~~~~~~s~L~i~~~-~~~~~d~g~ytC~v~n~~~~~~~~~~i~~ 225 (232)
T 1dn0_B 182 GGKYAATSQVLLPSK-DVMAGTDEHVVCKVQHPNGNKEKNVPLPV 225 (232)
T ss_dssp TTEEEEEEEEEECTT-CC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred CCcEEEEEEEEEcHH-HhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence 121 346888887 55 6899999999999998766555544
No 289
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.66 E-value=2.9e-16 Score=150.30 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=81.7
Q ss_pred EEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccCCCC
Q psy2776 424 RFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPP 503 (803)
Q Consensus 424 ~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p 503 (803)
+|+|.+++.+|+|.|+|.|.|..|...... .+.|.|..+.
T Consensus 67 sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~----------------------------------------~~~L~V~~~~ 106 (182)
T 1hnf_A 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEK----------------------------------------IFDLKIQERV 106 (182)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTSCEEEEE----------------------------------------EEEEEEECCC
T ss_pred CEEECCCChhhCEEEEEEEEeCCCceeEEE----------------------------------------EEEEEEcCcC
Confidence 699999999999999999999877654321 3445555443
Q ss_pred CCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 504 QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 504 ~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
..|.+. ..+..+.|+|.+.+.|.+.+.|+++|..+ .+. ...|.+.. ..+|+|.|+|.|
T Consensus 107 ~~P~i~-----------~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~---------~~~i~~~~-~~~d~G~Y~C~a 164 (182)
T 1hnf_A 107 SKPKIS-----------WTCINTTLTCEVMNGTDPELNLYQDGKHL-KLS---------QRVITHKW-TTSLSAKFKCTA 164 (182)
T ss_dssp CCCEEE-----------EETTTTEEEEECSSCSSCEEEEEESSCEE-EEE---------SSCEEEEC-CSCEEEEEEEEE
T ss_pred CCCEEE-----------EccCcEEEEeEccCCCCCEEEEEECCEEC-CCC---------CcEEEEec-ccCCCcEEEEEE
Confidence 333221 12447999999999999999999999887 211 12233322 478999999999
Q ss_pred EcCCCCeEEEEEEE
Q psy2776 584 TNAAGSTSLDLSLQ 597 (803)
Q Consensus 584 ~n~~g~~s~s~~l~ 597 (803)
.|..|..+....+.
T Consensus 165 ~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 165 GNKVSKESSVEPVS 178 (182)
T ss_dssp ECSSCEEEEEEEEE
T ss_pred EeCCCCcEEcceec
Confidence 99999888777663
No 290
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.66 E-value=1e-15 Score=151.29 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=62.4
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec-------------ccee--EEEecCeeEEEEecCCCCc
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI-------------KGRN--ITYENNVARFTVVNCSESS 208 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~-------------~~~~--~~~~~~~~~L~i~~v~~~d 208 (803)
.+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|.+. .. ...+ ........+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (213)
T 3r06_A 3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED 82 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence 45555677889999999999999998889999998431 00 0111 2223356689999999999
Q ss_pred ceEEEEEEEcCCcCee-eEEEEEE
Q psy2776 209 EGRYTCKATNEAGTAE-TSCTLLV 231 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~-~s~~l~V 231 (803)
+|.|+|.+.|..+... ....|.|
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V 106 (213)
T 3r06_A 83 IGSYYCQQYYNYPWTFGPGTKLEI 106 (213)
T ss_dssp CSEEEEEECSSSSCEECCCEEEEE
T ss_pred CEEEEEecccCCceEEcCCceEEE
Confidence 9999999998765332 2355666
No 291
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.66 E-value=6.1e-16 Score=156.93 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=62.8
Q ss_pred CcCeeeecCCcEEEEEEECccCCCe-----eEEEEcCeecccee----------EEE-----------ecCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPD-----IKWYKDDSLIKGRN----------ITY-----------ENNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~-----i~W~~~~~~~~~~~----------~~~-----------~~~~~~L~i~~v 204 (803)
+....+.+|++++|.|.+.+.|.+. +.|++++....... ..+ ..+..+|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 4456788999999999999887775 99999753222110 000 112345999999
Q ss_pred CCCcceEEEEEEEcCCcCeeeEEEEEEeee
Q psy2776 205 SESSEGRYTCKATNEAGTAETSCTLLVQGK 234 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~ 234 (803)
+.+|+|.|+|.+.|..+.....+.|.|..+
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~ 119 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVAS 119 (248)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred CHHHCeEEEEEEEeCCccceeEEEEEEecC
Confidence 999999999999998887777788888764
No 292
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.66 E-value=3.1e-16 Score=155.08 Aligned_cols=128 Identities=14% Similarity=0.224 Sum_probs=87.1
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.+..+...... ...+.|.|.
T Consensus 80 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--------------------------------------~~~~~l~V~ 121 (214)
T 2zg1_A 80 KNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQ--------------------------------------QNKLNLEVT 121 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTTEEEECC--------------------------------------SSCEEEEEE
T ss_pred CeEEEEEccCCHhhCceEEEEEEcCCCceeeec--------------------------------------CCceEEEEe
Confidence 345799999999999999999998653221100 014455555
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCc----CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcC
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF----PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADT 576 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~----p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~ds 576 (803)
.+|..|.+.. ...+.+|+.++|.|.+.+. |.|.+.|++++..+.... ....+.|.|..+..+|.
T Consensus 122 ~~~~~p~i~~------~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~------~~~~~~L~i~~~~~~~~ 189 (214)
T 2zg1_A 122 ALIEKPDIHF------LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE------TTRSSELTLTPRPEDHG 189 (214)
T ss_dssp CCCCCCEEC--------CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS------CCCSSEEEECCCTTCCS
T ss_pred cCCCCCceec------CccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC------ceeEEEEEEecccHHcC
Confidence 5554443322 1125689999999999874 889999999986543221 12457899999999999
Q ss_pred eEEEEEEEcCCCC--eEEEEEEEE
Q psy2776 577 STYTVTATNAAGS--TSLDLSLQV 598 (803)
Q Consensus 577 G~Y~C~a~n~~g~--~s~s~~l~V 598 (803)
|.|+|.|.|..+. .+.++.|.|
T Consensus 190 g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 190 TNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp CEEEEEEECC----CCEEEEECCC
T ss_pred cEEEEEEEeCCCCcceEEEEEEEe
Confidence 9999999998655 455555544
No 293
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.66 E-value=5.9e-16 Score=156.43 Aligned_cols=181 Identities=15% Similarity=0.141 Sum_probs=116.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---ec--------------CCCcEEEEecC--CeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---IT--------------DSKACRIFIDE--ETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i~--------------~~~~~~~~~~~--~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +.+.+.|+|+. .. +. ...++.+..+. ....|.|.+++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 89 (242)
T 1hxm_B 10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK 89 (242)
T ss_dssp EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred eEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence 5778999999999999886 66889999853 21 10 22455554332 467999999999
Q ss_pred CcCeEEEEEEEcCCC-C------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 574 ADTSTYTVTATNAAG-S------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-~------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
+|+|.|.|.+.+..+ . ......|.|...+
T Consensus 90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------------- 125 (242)
T 1hxm_B 90 QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQ-------------------------------------------- 125 (242)
T ss_dssp GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSC--------------------------------------------
T ss_pred ccCEEEEEeeecCCccccccceeEcCcEEEEEcccc--------------------------------------------
Confidence 999999999998631 1 1123455554321
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCe-eccCCCC-eEEE
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNK-PLLSSPK-KREI 722 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~-~l~~~~~-~~~~ 722 (803)
.+. ..++ .|.+.. +....+.+|+.++|.|.+.|. |. +.+.|++++. ++..... ....
T Consensus 126 ~~~-----------------~~~p-~~~v~~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~ 186 (242)
T 1hxm_B 126 LDA-----------------DVSP-KPTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMK 186 (242)
T ss_dssp CCS-----------------CCSC-BCCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEE
T ss_pred cCC-----------------CcCC-CceEEC-CChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceec
Confidence 000 0000 111221 223346679999999999987 65 6899999987 5643210 0111
Q ss_pred eeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 723 FDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.++. ...|.|..+ .. | |.|+|.|.|..|.......+.+
T Consensus 187 ~~~~~~~~s~L~i~~~-~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 187 TNDTYMKFSWLTVPEK-SL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CSSSEEEEEEEEECTG-GG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCCcEEEEEEEEEccc-cC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 2222 246888876 33 5 9999999999998876666655
No 294
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.66 E-value=1e-15 Score=154.51 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=115.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--------------CeeecC---CCcEEEEe-cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--------------GAEITD---SKACRIFI-DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--------------g~~i~~---~~~~~~~~-~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+.+.|.|.+.+ +.+.+.|+|. +..... ..++.+.. ......|.|.+++.+|+|.
T Consensus 11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~ 89 (240)
T 3q5y_A 11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM 89 (240)
T ss_dssp EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred eeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence 577899999999999876 7789999982 221111 13555543 2346789999999999999
Q ss_pred EEEEEEcCCC---CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 579 YTVTATNAAG---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 579 Y~C~a~n~~g---~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.|.+..+ .......|.|....
T Consensus 90 Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 116 (240)
T 3q5y_A 90 YFCASSLRWGDEQYFGPGTRLTVLEDL----------------------------------------------------- 116 (240)
T ss_dssp EEEEEESSTTBCCEECCCEEEEEESCG-----------------------------------------------------
T ss_pred EEEEEccCCCcceEEcCCEEEEEeccc-----------------------------------------------------
Confidence 9999984322 22233445553200
Q ss_pred eeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCe----EEEeeCc--
Q psy2776 656 ELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKK----REIFDGE-- 726 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~----~~~~~~~-- 726 (803)
....+|.+. ..+....+.+|+.++|.|.+.| .|.+ .+.|+++|.++..+.+. ....++.
T Consensus 117 ------------~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~ 184 (240)
T 3q5y_A 117 ------------RNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYS 184 (240)
T ss_dssp ------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEE
T ss_pred ------------cCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEE
Confidence 001144443 3333445667999999999998 5656 79999999998654322 1122222
Q ss_pred -eEEEEEecCCCCCC-ceeEEEEEEccCcceee
Q psy2776 727 -NIILELKEADSETD-AGDYKVVATNELGSATH 757 (803)
Q Consensus 727 -~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~ 757 (803)
...|.|..+ ..+| .|.|+|.|.|.......
T Consensus 185 ~~s~L~i~~~-~~~d~~g~YtC~v~~~~~~~~~ 216 (240)
T 3q5y_A 185 LSSRLRVSAT-FWHNPRNHFRCQVQFHGLSEED 216 (240)
T ss_dssp EEEEEEEEHH-HHSCTTCEEEEEEEECCBCTTS
T ss_pred EEEEEEECHH-HhccCCCEEEEEEEcCCCCCcc
Confidence 234889988 5677 77999999998766543
No 295
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=159.63 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=111.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee---ec--C--C----------CcEEEE--ecCCeEEEEEeeeccCc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE---IT--D--S----------KACRIF--IDEETSTIAIYSVVRAD 575 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~---i~--~--~----------~~~~~~--~~~~~~~L~i~~v~~~d 575 (803)
...+.+|++++|.|.+.+.|.+.+.|+|. +.. +. . . .+.... ......+|.|.+++.+|
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 90 (259)
T 3omz_A 11 SVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEND 90 (259)
T ss_dssp CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGG
T ss_pred eeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCccc
Confidence 57789999999999999999899999983 111 00 0 0 011111 11234579999999999
Q ss_pred CeEEEEEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 576 TSTYTVTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 576 sG~Y~C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
+|.|.|.|.|..+. ......|.|...+.... ..+
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~---------------------------------------~~~---- 127 (259)
T 3omz_A 91 SGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSAD---------------------------------------DAK---- 127 (259)
T ss_dssp CEEEEEEEECTTSSCEEECCCEEEEEEC----------------------------------------------------
T ss_pred CEEEEEEEeeCCccccEECCCCEEEEecCCCCcc---------------------------------------ccc----
Confidence 99999999998662 33345566644210000 000
Q ss_pred ccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCe--ecc------------CCC
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNK--PLL------------SSP 717 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~--~l~------------~~~ 717 (803)
........+|.+...+....+.+|++++|.|.+.+. |.+.+.|+|++. .+. ...
T Consensus 128 -----------~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~ 196 (259)
T 3omz_A 128 -----------KDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSG 196 (259)
T ss_dssp --------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEET
T ss_pred -----------cccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCC
Confidence 000000114567777777889999999999999875 888999998531 110 123
Q ss_pred CeEEEe--eCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 718 KKREIF--DGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 718 ~~~~~~--~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
++.+.. ......|.|.++ +.+|+|.|.|.|++.
T Consensus 197 r~~~~~~~~~~~~~L~I~~v-~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 197 RYSVNFKKAAKSVALTISAL-QLEDSAKYFCALGES 231 (259)
T ss_dssp TEEECCBGGGTBCCEEESSC-CGGGCSEEEEEEESC
T ss_pred eEEEEEcCcCCEEEEEECCC-ChhHCEEEEEEEeCc
Confidence 444432 234567999999 799999999999864
No 296
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.65 E-value=1.1e-15 Score=151.36 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=87.5
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.|.|..+...... ...|.
T Consensus 68 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~----------------------------------------~~~l~ 107 (216)
T 2xzc_L 68 SGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGG----------------------------------------GTKLE 107 (216)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBC----------------------------------------CEEEE
T ss_pred cCCEEEEEECCCCcccCEEEEEEEEeCCCcceECC----------------------------------------CEEEE
Confidence 34567899999999999999999999876111110 22333
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCC-Cc-EEEEecCC-----eEEEEEe
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDS-KA-CRIFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~-~~-~~~~~~~~-----~~~L~i~ 569 (803)
|..++..|.+.+.... .....|+.+.|.|.+.|. |++ .+.|+|+|..+..+ .. .......+ .+.|.|.
T Consensus 108 V~~~~~~P~v~~~~~~---~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~ 184 (216)
T 2xzc_L 108 IKRTVAAPSVFIFPPS---DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLS 184 (216)
T ss_dssp ECCCCBCCEEEEECCC---HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred EcCCCCCCceEEeCCC---hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEEC
Confidence 3333222322221111 112358899999999984 554 89999999988764 11 11111111 2479999
Q ss_pred eeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
++..+|+|.|+|.|.|..........+
T Consensus 185 ~~~~~d~g~Y~C~a~n~~~~~~~~~~i 211 (216)
T 2xzc_L 185 KADYEKHKVYACEVTHQGLSSPVTKSF 211 (216)
T ss_dssp HHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred HHHhCCCCcEEEEEEcCCCCCceEEec
Confidence 999999999999999987665444433
No 297
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.65 E-value=7.7e-16 Score=152.95 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=84.8
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceee--eeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTA--ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 497 (803)
.+..+|+|.+++.+|+|.|+|.+.+..+.. .... ...|
T Consensus 76 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~----------------------------------------~~~l 115 (219)
T 1c1e_H 76 ATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQ----------------------------------------GTSL 115 (219)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECC----------------------------------------CEEE
T ss_pred CCEEEEEECCCCcccCEEEEEEEeccCcccceeecC----------------------------------------ceEE
Confidence 345789999999999999999999876321 1100 2333
Q ss_pred ccCC-CCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCeeecCCCcEEEEecC---CeEEEEEeee
Q psy2776 498 QIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAEITDSKACRIFIDE---ETSTIAIYSV 571 (803)
Q Consensus 498 ~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v 571 (803)
.|.. ++..|.+..... ...+.+|+.+.|.|.+.| .|.| .+.|+++|..+...........+ ..+.|.| +.
T Consensus 116 ~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i-~~ 191 (219)
T 1c1e_H 116 TVSSAKTTPPSVYPLAP---GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV-PS 191 (219)
T ss_dssp EECCCCCBCCEEEEECC---CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEE-ES
T ss_pred EEecCCCCCCeEEEecC---ccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEE-ec
Confidence 3433 222222222111 123467999999999998 8988 99999999764211000111111 1257888 44
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
...|.|.|+|.|.|..|.......|.
T Consensus 192 ~~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 192 SPRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp SSTTTSCCEEEEEEGGGTEEEEEECC
T ss_pred ccCCCCEEEEEEEeCCCCccEEEecC
Confidence 44467999999999988766655544
No 298
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.65 E-value=1.7e-15 Score=150.04 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=112.0
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec----------------CCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT----------------DSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~----------------~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|+++.|.|.+.+.+ .+.+.|+|+. ..+. ...++.+..+ .+...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence 46788999999999999875 4789999863 2110 1235555432 24579999999999
Q ss_pred cCeEEEEEEEcCCCC---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCC
Q psy2776 575 DTSTYTVTATNAAGS---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGP 651 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~ 651 (803)
|+|.|.|.+.|..+. ....+.|.|...
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~-------------------------------------------------- 118 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSA-------------------------------------------------- 118 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEECSS--------------------------------------------------
T ss_pred cCEEEEEEEecCCcccceEcCCEEEEecCC--------------------------------------------------
Confidence 999999999987432 122345666421
Q ss_pred CccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeCceEE
Q psy2776 652 EATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDGENII 729 (803)
Q Consensus 652 ~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~ 729 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .+.|+++|..+......... ++..+.
T Consensus 119 -----------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~ 180 (215)
T 1c5d_H 119 -----------------QTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVL-QSGLYT 180 (215)
T ss_dssp -----------------CCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEE-ETTEEE
T ss_pred -----------------CCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCccc-CCCCEE
Confidence 1124544433323345789999999999987 888 99999998765322111111 222222
Q ss_pred E--EEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 730 L--ELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 730 L--~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+ .+... ..+| |.|+|.|.|..|.....
T Consensus 181 ~~s~L~~~-~~~~-g~ytC~v~n~~~~~~~~ 209 (215)
T 1c5d_H 181 LTSSVTSS-TWPS-QTVTCNVAHPASSTKVD 209 (215)
T ss_dssp EEEEEEES-STTT-SCCEEEEEEGGGTEEEE
T ss_pred EEEEEecc-cCCC-CeEEEEEEeCCCCccEE
Confidence 2 23333 3355 99999999999986543
No 299
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.64 E-value=2.2e-15 Score=153.77 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=113.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ...++.+..+ .+...|.|.+++.
T Consensus 15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 94 (261)
T 2xqy_G 15 AELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS 94 (261)
T ss_dssp EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence 46788999999999999877 5789999863 2211 0235555432 3467999999999
Q ss_pred CcCeEEEEEEEcCCCCe---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 574 ADTSTYTVTATNAAGST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
+|+|.|.|.+.|..+.. ...+.|.|...
T Consensus 95 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~------------------------------------------------- 125 (261)
T 2xqy_G 95 EDSAVYYCGRLGYVYGFDYWGQGTTLTVSSA------------------------------------------------- 125 (261)
T ss_dssp GGCEEEEEEEECTTSSEEEECCCEEEEECSS-------------------------------------------------
T ss_pred ccCeEEEEEEecCCCcceEECCCEEEEEccC-------------------------------------------------
Confidence 99999999999964321 12235555331
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEEeeC---
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREIFDG--- 725 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~~~~--- 725 (803)
...+|.+........+.+|+.++|.|.+.|. |.+ .|.|++++..+.......+...+
T Consensus 126 ------------------~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~ 187 (261)
T 2xqy_G 126 ------------------KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYT 187 (261)
T ss_dssp ------------------CCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEE
T ss_pred ------------------CCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEE
Confidence 0114444433222346789999999999986 776 99999998765311100111112
Q ss_pred ceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 726 ENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 726 ~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
....|.|..+ ..+| |.|+|.|.|......
T Consensus 188 ~~s~L~i~~~-~~~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 188 LSSSVTVTSS-TWPS-QSITCNVAHPASSTK 216 (261)
T ss_dssp EEEEEEEETT-TTTT-SCCEEEEEEGGGTEE
T ss_pred EEEEEEEecc-ccCC-CEEEEEEEECCCCcc
Confidence 2357999888 5567 999999999776644
No 300
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.64 E-value=1.1e-15 Score=153.63 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=118.6
Q ss_pred cCCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 311 KLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 311 ~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
..|....+.+|+++.|.|.+ +.|.+.+.|+|.+..- ....+....... .....+
T Consensus 29 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~---~~~~~~~~~~~~-------~~~~~~--------------- 83 (237)
T 3sob_L 29 QSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGK---APKLLIYSASFL-------YSGVPS--------------- 83 (237)
T ss_dssp EECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTS---CCEEEEETTTEE-------CTTCCT---------------
T ss_pred eCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCC---CCEEEEEecccc-------CCCCCC---------------
Confidence 33555677789999999999 7788999999853110 001111110000 000000
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
...+....+...|+|.+++.+|+|.|+|.+.+..+.....
T Consensus 84 -----------------------r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~----------------- 123 (237)
T 3sob_L 84 -----------------------RFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQ----------------- 123 (237)
T ss_dssp -----------------------TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC-----------------
T ss_pred -----------------------cEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcC-----------------
Confidence 1111234466789999999999999999998876432221
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-C-CCeeEEeeCCe
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P-RPEISWMKNGA 547 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p-~~~v~W~~~g~ 547 (803)
...|.|...+..|.+.+... ...+.+|+.+.|.|.+.+. | .+.+.|+|+|.
T Consensus 124 ------------------------~~~l~V~~~~~~p~v~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~ 176 (237)
T 3sob_L 124 ------------------------GTKVEIKRTVAAPSVFIFPP---SDEQLKSGTASVVCLLNNFYPREAKVQWKVDNA 176 (237)
T ss_dssp ------------------------CEEEEEECCCBCCEEEEECC---CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ------------------------cEEEEEecCCCCCceEEeCC---ChhhccCCceEEEEEEcccCCCceEEEEEECCC
Confidence 22333333333333322111 1223458899999999885 4 48999999999
Q ss_pred eecCCC-c-EEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 548 EITDSK-A-CRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 548 ~i~~~~-~-~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.+..+. . .......+ .+.|.|..+..+|+|.|+|.|.|.......+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 232 (237)
T 3sob_L 177 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232 (237)
T ss_dssp ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred CCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence 887532 1 11111111 3578999999999999999999998765544443
No 301
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.64 E-value=5.9e-15 Score=146.77 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=113.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-------------------CCCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-------------------DSKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-------------------~~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|+++.|.|.+.+.+ .+.+.|+|.. ..+. ...++.+..+ .....|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 88 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL 88 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence 46688999999999998753 5789999742 1110 1145554432 34568999999
Q ss_pred ccCcCeEEEEEEEcCC--CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 572 VRADTSTYTVTATNAA--GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~--g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+.+|+|.|.|.+.|.. ........|.|...+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------- 121 (221)
T 3m8o_H 89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS----------------------------------------------- 121 (221)
T ss_dssp CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC-----------------------------------------------
T ss_pred CHHHCEEEEEEEECCChhheECCCEEEEEecCC-----------------------------------------------
Confidence 9999999999999874 223334456554211
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCC-C-ceEEeeCCeecc----------CC
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPA-P-SIVWFRNNKPLL----------SS 716 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~-~-~v~W~~~~~~l~----------~~ 716 (803)
..+|.+........ .+|+.++|.|.+.| .|. + .+.|+++|.++. .+
T Consensus 122 --------------------~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~ 180 (221)
T 3m8o_H 122 --------------------PTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASG 180 (221)
T ss_dssp --------------------CBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSS
T ss_pred --------------------CCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCC
Confidence 12454542222222 68999999999998 676 4 899999998763 22
Q ss_pred CCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 717 PKKREIFDGENIILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 717 ~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
..+.+ ...|.|..+ ..+|+|.|+|.|.|..|...
T Consensus 181 ~~~~~-----~s~L~i~~~-~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 181 DLYTT-----SSQLTLPAT-QCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp SCEEE-----EEEEEEEGG-GSCTTCEEEEEEEETTSCCE
T ss_pred CcEEE-----EEEEEECHH-HcCCCCeEEEEEEECCCCce
Confidence 22221 235899998 67899999999999987643
No 302
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.64 E-value=2.3e-15 Score=132.38 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=88.8
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+........|.|.++ +.+|+|.|+|.|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA-RQEHCGCYTLLVEN 84 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTC-CTTTCEEEEEEEEC
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCC-ChhcCEEEEEEEEE
Confidence 48899988889999999999999999999999999999999998888888887777889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEeeccC
Q psy2776 751 ELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~~~~~ 769 (803)
.+|..+..+.|.|...+..
T Consensus 85 ~~g~~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 85 KLGSRQAQVNLTVVDKPDP 103 (114)
T ss_dssp SSCEEECCEEEEEECSCSC
T ss_pred CCCcEEEEEEEEEECCCCC
Confidence 9999999999999654433
No 303
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.64 E-value=9.6e-16 Score=155.15 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=114.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEee--------------CCeeecCC----CcEEEEec-CCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMK--------------NGAEITDS----KACRIFID-EETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~--------------~g~~i~~~----~~~~~~~~-~~~~~L~i~~v~~~dsG 577 (803)
...+.+|+++.|.| ..+.+.+.+.|+| ++..+... .++.+... .....|.|.+++.+|+|
T Consensus 11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 89 (245)
T 4ei6_B 11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA 89 (245)
T ss_dssp EEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred eEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence 57789999999999 6778889999998 22222221 45555432 34579999999999999
Q ss_pred EEEEEEEcCC----CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 578 TYTVTATNAA----GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 578 ~Y~C~a~n~~----g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|.|.+.. +.......|.|....
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------- 118 (245)
T 4ei6_B 90 VYFCASSFWGAYAEQFFGPGTRLTVLEDL--------------------------------------------------- 118 (245)
T ss_dssp EEEEEEECSSTTCCCEECCCEEEEEESCG---------------------------------------------------
T ss_pred EEEEEEccCCCcceEEEcCCcEEEEeccc---------------------------------------------------
Confidence 9999999642 222333445553210
Q ss_pred cceeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEE--------
Q psy2776 654 TTELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI-------- 722 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~-------- 722 (803)
....+|.+ +..+....+.+|+.++|.|.+.|. |.+ .+.|+++|.++..+.+....
T Consensus 119 --------------~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 184 (245)
T 4ei6_B 119 --------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPAL 184 (245)
T ss_dssp --------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTS
T ss_pred --------------CCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccC
Confidence 00013433 333444456679999999999985 545 89999999998654321110
Q ss_pred eeCc---eEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 723 FDGE---NIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
.++. ...|.|... ..+| .|.|+|.|.|......
T Consensus 185 ~~g~~~~~s~L~i~~~-~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 185 NDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp TTCCEEEEEEEEEEHH-HHSCTTCEEEEEEEECCBCTT
T ss_pred CCCCEEEEEEEEEcHH-HhccCCCeEEEEEEECCCCCc
Confidence 0122 234888887 4567 9999999999765544
No 304
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.64 E-value=3.4e-15 Score=151.90 Aligned_cols=179 Identities=13% Similarity=0.114 Sum_probs=117.3
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee--------------cCCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI--------------TDSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i--------------~~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +...+.|+|.. . .+ ....++.+..+ .+...|.|.+++.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS 88 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 4678899999999999873 35689999842 1 11 01134554432 3457899999999
Q ss_pred CcCeEEEEEEEcCC----CCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 574 ADTSTYTVTATNAA----GSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~----g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|+|.|.|.+.|.. +.......|.|...
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~------------------------------------------------ 120 (253)
T 3liz_H 89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAA------------------------------------------------ 120 (253)
T ss_dssp GGCEEEEEEECCBTTTBCCEECCCEEEEECSS------------------------------------------------
T ss_pred hhCEEEEEEEecCCcceeeEECCCEEEEEecc------------------------------------------------
Confidence 99999999998862 22233345555321
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEEEeeC--
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREIFDG-- 725 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~~~~-- 725 (803)
...+|.+........+..|+.++|.|.+.| .|.+ .+.|+++|..+...........+
T Consensus 121 -------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~ 181 (253)
T 3liz_H 121 -------------------KTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLY 181 (253)
T ss_dssp -------------------CCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEE
T ss_pred -------------------CCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeE
Confidence 112565654444445667999999999998 6767 89999998743211000011111
Q ss_pred -ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEEE
Q psy2776 726 -ENIILELKEADSETDAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 726 -~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
....|.|... ..+| |.|+|.|.|..+.....+.|.+.
T Consensus 182 ~~~s~L~i~~~-~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 182 TLSSSVTVPSS-TWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEEEEEEEETT-STTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEEEEcHH-HCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 1256999998 6788 99999999999988877777665
No 305
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.64 E-value=5.3e-15 Score=150.78 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=57.5
Q ss_pred cceEEeecceeEEEEEEcCcCC-CeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPR-PEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYT 580 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~ 580 (803)
....+.+|++++|.|.+.+.|. +.+.|+|. +..+. ...++.+.......+|.|.++..+|+|.|.
T Consensus 157 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 236 (256)
T 3juy_B 157 GTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYY 236 (256)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEE
Confidence 3577889999999999999887 89999983 32221 234566655566788999999999999999
Q ss_pred EEEEcCCC
Q psy2776 581 VTATNAAG 588 (803)
Q Consensus 581 C~a~n~~g 588 (803)
|.|.|..+
T Consensus 237 C~~~~~~~ 244 (256)
T 3juy_B 237 CQVYGASS 244 (256)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99998644
No 306
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.64 E-value=3.1e-15 Score=150.83 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=115.8
Q ss_pred eeccCcCeeeecCCcEEEEEEECccC----CCeeEEEEcC--eecc-------------ceeEE--EecCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVP----TPDIKWYKDD--SLIK-------------GRNIT--YENNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p----~p~i~W~~~~--~~~~-------------~~~~~--~~~~~~~L~i~~v~ 205 (803)
+...+....+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ..++. ..++..+|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (240)
T 1moe_A 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE 83 (240)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence 44456677889999999999999887 7789999963 1110 11222 23345689999999
Q ss_pred CCcceEEEEEEEcCCcC-eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeec
Q psy2776 206 ESSEGRYTCKATNEAGT-AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLAR 284 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (803)
.+|+|.|+|.+.|..+. ......|.|...+....
T Consensus 84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~--------------------------------------------- 118 (240)
T 1moe_A 84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGG--------------------------------------------- 118 (240)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCC---------------------------------------------
T ss_pred hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCC---------------------------------------------
Confidence 99999999999998664 33345676665421000
Q ss_pred cccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeec--Ceecc------------
Q psy2776 285 WTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKK--GKEIK------------ 347 (803)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~--g~~l~------------ 347 (803)
+......+....+.+|++++|.|.+ +.| .+.+.|+|+ |..+.
T Consensus 119 ---------------------~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~ 177 (240)
T 1moe_A 119 ---------------------GEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNS 177 (240)
T ss_dssp ---------------------CCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEE
T ss_pred ---------------------ceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCcc
Confidence 0011111233456779999999999 666 469999996 33221
Q ss_pred -----ccceeEEEEc--CceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 -----ESARHIITSR--GTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 -----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+..+ +....|.|.++..+|+|.|.|.|...
T Consensus 178 ~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 178 KYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred ccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 1123444433 44578999999999999999999853
No 307
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.64 E-value=5.6e-15 Score=150.62 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=63.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTVT 582 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~ 582 (803)
...+.+|++++|.|.+.+.|.+.+.|+|+ +..+. ...++.........+|.|.++..+|+|.|.|.
T Consensus 147 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 226 (256)
T 3umt_A 147 SLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCL 226 (256)
T ss_dssp EEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred eEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEE
Confidence 46788999999999999999899999984 22221 12456555556677899999999999999999
Q ss_pred EEcCCCCe-EEEEEEEEeeeE
Q psy2776 583 ATNAAGST-SLDLSLQVLGYI 602 (803)
Q Consensus 583 a~n~~g~~-s~s~~l~V~~~p 602 (803)
|.|..+.. .....|.|...+
T Consensus 227 ~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 227 QYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp ECSSSSCEECCCEEEEEC---
T ss_pred EeeCCCcEECCCEEEEEECCC
Confidence 99865432 334667776654
No 308
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.63 E-value=1.2e-15 Score=154.57 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=115.5
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--eee--------------cCCCcEEEEe-cCCeEEEEEeeeccCcCeEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AEI--------------TDSKACRIFI-DEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~i--------------~~~~~~~~~~-~~~~~~L~i~~v~~~dsG~Y 579 (803)
...+.+|+.+.|.|.+.+.|.+.+.|+|.. ..+ ....++.+.. ......|.|.+++.+|+|.|
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y 89 (245)
T 3nfj_J 10 TLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSGFY 89 (245)
T ss_dssp EEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred eEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCChhhCEEE
Confidence 577899999999999999999999999832 110 0113444433 23567899999999999999
Q ss_pred EEEEEcCCC------CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCc
Q psy2776 580 TVTATNAAG------STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEA 653 (803)
Q Consensus 580 ~C~a~n~~g------~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s 653 (803)
.|.|.|..| .......|.|....
T Consensus 90 ~C~~~~~~g~~~~~~~~~~~~~l~V~~~~--------------------------------------------------- 118 (245)
T 3nfj_J 90 LCAWSVSVGAGVPTIYFGEGSWLTVVEDL--------------------------------------------------- 118 (245)
T ss_dssp EEEEECCTTTSSCCCEECCCEEEEEESCG---------------------------------------------------
T ss_pred EEEEeeccCCCceeEEECCCeEEEEEccc---------------------------------------------------
Confidence 999999433 11223345553310
Q ss_pred cceeeeeeecccCCCCCCCCeeE-eccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeEEE--------
Q psy2776 654 TTELVALATHATLGSPGQAPLFI-ERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKREI-------- 722 (803)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~~~-------- 722 (803)
....+|.+. ..+....+.+|+.++|.|.+.|. |++ .+.|+++|.++..+......
T Consensus 119 --------------~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 184 (245)
T 3nfj_J 119 --------------NKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPAL 184 (245)
T ss_dssp --------------GGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSSSS
T ss_pred --------------CCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEECCCCcccccccccccccC
Confidence 001134443 33333445679999999999996 444 68999999998654221100
Q ss_pred eeCc---eEEEEEecCCCCCC-ceeEEEEEEccCcceee
Q psy2776 723 FDGE---NIILELKEADSETD-AGDYKVVATNELGSATH 757 (803)
Q Consensus 723 ~~~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~~ 757 (803)
.++. ...|.|... ..+| .|.|+|.|.|..+....
T Consensus 185 ~~~~~~~~s~L~i~~~-~~~d~g~~YtC~v~~~~~~~~~ 222 (245)
T 3nfj_J 185 NDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEND 222 (245)
T ss_dssp TTCCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBCSSS
T ss_pred CCCCEEEEEEEEECHH-HhccCCCeEEEEEEECCCCCcc
Confidence 1122 246888887 4566 67999999998776653
No 309
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.63 E-value=6.6e-15 Score=149.46 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=116.2
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe-----ec----------ccee--EEEecCeeEEEEecCCCC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS-----LI----------KGRN--ITYENNVARFTVVNCSES 207 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~-----~~----------~~~~--~~~~~~~~~L~i~~v~~~ 207 (803)
+.+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|... .+ ...+ ....+...+|.|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 345556677888999999999999999999999999531 00 0111 222334568999999999
Q ss_pred cceEEEEEEEcCCcCee-eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccc
Q psy2776 208 SEGRYTCKATNEAGTAE-TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWT 286 (803)
Q Consensus 208 d~G~Y~C~a~n~~g~~~-~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (803)
|+|.|.|.+.|..+... ....|.|...+......... ..+.
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~-~~~~------------------------------------- 126 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSG-GGGS------------------------------------- 126 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------------------------------------
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccc-cccc-------------------------------------
Confidence 99999999998766432 23456665431000000000 0000
Q ss_pred cccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeec--Ceeccc-------------
Q psy2776 287 SDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKK--GKEIKE------------- 348 (803)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~--g~~l~~------------- 348 (803)
. ....+.++. .+....+.+|++++|.|.+ +.+ .+.+.|+|+ +..+..
T Consensus 127 -------------~-~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 191 (250)
T 3esu_F 127 -------------G-GGGSEVQLQ-QSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNY 191 (250)
T ss_dssp ----------------------CE-ECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred -------------c-CcccceEEe-cCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCcccc
Confidence 0 000011111 1233456789999999999 556 789999997 544321
Q ss_pred ----cceeEEEEc--CceeEEEEeecCCCCCccEEEEEec
Q psy2776 349 ----SARHIITSR--GTQRKLVIKRVTQDDETDIGVLALN 382 (803)
Q Consensus 349 ----~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~ 382 (803)
..++.+..+ +....|.|.++..+|+|.|.|.+.+
T Consensus 192 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 192 NGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp CGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 134444433 3456799999999999999999997
No 310
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=156.19 Aligned_cols=130 Identities=14% Similarity=0.232 Sum_probs=79.8
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|.|.+.+..+...... + ....|.|
T Consensus 98 ~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---~-----------------------------------~~~~l~V 139 (270)
T 3qib_D 98 NSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYF---G-----------------------------------PGTRLLV 139 (270)
T ss_dssp TSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEE---C-----------------------------------CCEEEEE
T ss_pred CcEEEEEECCCCHhHCeEEEEEEecCCCccceEE---C-----------------------------------CcEEEEE
Confidence 3467899999999999999999987432111100 0 0122223
Q ss_pred CC---CCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCeeecCCCcEEE------Ee-cCC----e
Q psy2776 500 QS---PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAEITDSKACRI------FI-DEE----T 563 (803)
Q Consensus 500 ~~---~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~i~~~~~~~~------~~-~~~----~ 563 (803)
.. .+..|.+.+.. .....+..|+.++|.|.+.| .|.+ .+.|+|+|..+..+..... .. .++ .
T Consensus 140 ~~~~~~~~~P~v~~~~--~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (270)
T 3qib_D 140 LEDLKNVFPPEVAVFE--PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS 217 (270)
T ss_dssp ESCSTTCBCCEEEEEE--CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEE
T ss_pred ccccccccCCceEEEC--CCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEE
Confidence 22 11112111111 11223445999999999998 5656 8999999999875421110 00 011 2
Q ss_pred EEEEEeeeccCc-CeEEEEEEEcCCCC
Q psy2776 564 STIAIYSVVRAD-TSTYTVTATNAAGS 589 (803)
Q Consensus 564 ~~L~i~~v~~~d-sG~Y~C~a~n~~g~ 589 (803)
+.|.|.....+| .|.|+|.|.|....
T Consensus 218 s~L~i~~~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 218 SRLRVSATFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp EEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred EEEEEcHHHhccCCCeEEEEEEecCCC
Confidence 567888888888 99999999987544
No 311
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.63 E-value=1.9e-15 Score=152.14 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=112.2
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec----------------cceeEEEe---cCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI----------------KGRNITYE---NNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~----------------~~~~~~~~---~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|++++|.|. .+.|.+.+.|+|+. ..+ ...++... ....+|.|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 344466788899999999999 67788999999952 110 01122222 245689999999
Q ss_pred CCcceEEEEEEEcCCcCee-----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccc
Q psy2776 206 ESSEGRYTCKATNEAGTAE-----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 280 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (803)
.+|+|.|+|.+.|..|... ....|.|...+..+.+..
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~-------------------------------------- 123 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDA-------------------------------------- 123 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHH--------------------------------------
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCc--------------------------------------
Confidence 9999999999999865311 123455543310000000
Q ss_pred eeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCceeeEEeecC--eec-----------
Q psy2776 281 WLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKG--KEI----------- 346 (803)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g--~~l----------- 346 (803)
......+...+....+.+|+++.|.|.+ +.|.+.+.|+|++ ..+
T Consensus 124 ----------------------~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~ 181 (238)
T 2p1y_A 124 ----------------------AKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSD 181 (238)
T ss_dssp ----------------------HHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCS
T ss_pred ----------------------ccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCC
Confidence 0000011222344556789999999999 7888999999974 111
Q ss_pred -cccceeEEE--EcCceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 347 -KESARHIIT--SRGTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 347 -~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
....++.+. ..+....|.|.++..+|+|.|+|.|.|..
T Consensus 182 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 182 KKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred cccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 112334443 23445789999999999999999999873
No 312
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.63 E-value=4.7e-16 Score=153.63 Aligned_cols=173 Identities=14% Similarity=0.201 Sum_probs=113.7
Q ss_pred CcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-------------ceeE--EEecCeeEEEEecCCCCcceEEE
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-------------GRNI--TYENNVARFTVVNCSESSEGRYT 213 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-------------~~~~--~~~~~~~~L~i~~v~~~d~G~Y~ 213 (803)
+....+.+|+.++|.|.+.+.|.+.+.|+|++ ..+. ..++ ...+....|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 56678889999999999998888899999853 2220 1222 22345678999999999999999
Q ss_pred EEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccc
Q psy2776 214 CKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLE 290 (803)
Q Consensus 214 C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (803)
|.+.|..+.. .....|.|...+.
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~------------------------------------------------------ 111 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPK------------------------------------------------------ 111 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCC------------------------------------------------------
T ss_pred EEEEcccCcccccCCceEEEEccCCC------------------------------------------------------
Confidence 9999732221 1224455533210
Q ss_pred cceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cc-eeeEEeecCeeccccceeE-EE--EcC--ceeE
Q psy2776 291 STAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PD-IQVKWLKKGKEIKESARHI-IT--SRG--TQRK 362 (803)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~-~~i~W~~~g~~l~~~~~~~-~~--~~~--~~~~ 362 (803)
.+ +.+....+. ..+.+|+.+.|.|.+ +. |. +.+.|+|+|.++..+.... .. .++ ....
T Consensus 112 -----------~~--p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~ 177 (212)
T 1nfd_E 112 -----------SS--PKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSY 177 (212)
T ss_dssp -----------BC--CEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEB
T ss_pred -----------CC--CEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEE
Confidence 00 001111111 122358899999999 54 55 8999999999887542211 11 111 1245
Q ss_pred EEEeecCCCCCccEEEEEeccccceeeee
Q psy2776 363 LVIKRVTQDDETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 363 l~i~~~~~~d~g~y~c~~~~~~~~~~~~~ 391 (803)
|.|.++..+|+|.|+|.|.|........|
T Consensus 178 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 206 (212)
T 1nfd_E 178 LSLTADQWKSHNRVSCQVTHEGETVEKSL 206 (212)
T ss_dssp CCEEHHHHHTCSCEEEEEECTTTTCCCCB
T ss_pred EEEchhhcCCCCeEEEEEEeCCceEEEEc
Confidence 88999999999999999999877654444
No 313
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.63 E-value=5.3e-15 Score=150.50 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=91.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.+..+..... ...|.|.
T Consensus 78 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~V~ 116 (253)
T 3uzq_A 78 NTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQ-----------------------------------------GTLVTVS 116 (253)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECSSSCCEECC-----------------------------------------CEEEEEC
T ss_pred CeEEEEeCCCCcccCEEEEEEEeeCCccEECC-----------------------------------------CcEEEEe
Confidence 45679999999999999999999855433221 1122222
Q ss_pred CC----------CCCccceeeeccccceEEeecceeEEEEEEcCcCCC----eeEEeeC--Ceeec------------CC
Q psy2776 501 SP----------PQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP----EISWMKN--GAEIT------------DS 552 (803)
Q Consensus 501 ~~----------p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~----~v~W~~~--g~~i~------------~~ 552 (803)
.. ...+.. .....+....+.+|++++|.|.+.+.|.+ .+.|+|+ +..+. ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~-~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
T 3uzq_A 117 AGGGGSGGGGSGGGGSEL-VMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIP 195 (253)
T ss_dssp SSSCCCCC---------C-CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred cCCccccccccCCCcccc-eEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccC
Confidence 11 000000 11112235778899999999999998887 8999985 22211 12
Q ss_pred CcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCe-EEEEEEEEeee
Q psy2776 553 KACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGST-SLDLSLQVLGY 601 (803)
Q Consensus 553 ~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~-s~s~~l~V~~~ 601 (803)
.++..........|.|.++..+|+|.|.|.|.|..+.. .....|.|...
T Consensus 196 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~ 245 (253)
T 3uzq_A 196 ARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRP 245 (253)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred CceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence 45555555566789999999999999999999875442 33445666554
No 314
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.63 E-value=5.9e-15 Score=152.77 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=91.6
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.|..|....... + ....|.|.
T Consensus 103 ~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~--~-----------------------------------~~~~L~V~ 145 (282)
T 1qok_A 103 NTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYW--G-----------------------------------QGTTVTVS 145 (282)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEE--C-----------------------------------CCEEEEEE
T ss_pred CeEEEEECcCChhhCEEEEEEeccCCCccceeee--C-----------------------------------CCEEEEEe
Confidence 4578999999999999999999998652111000 0 01223333
Q ss_pred CCCCC----------ccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEee--CCeeec------------CCCcEE
Q psy2776 501 SPPQQ----------PAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMK--NGAEIT------------DSKACR 556 (803)
Q Consensus 501 ~~p~~----------~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~--~g~~i~------------~~~~~~ 556 (803)
.+|.. ... .....+....+.+|++++|.|.+.+.| +.+.|+| +|..+. ...++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~ 223 (282)
T 1qok_A 146 SGGGGSGGGGSGGGGSEN-VLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFS 223 (282)
T ss_dssp C---------------CC-CEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEE
T ss_pred cCCcccCCccCCCCccce-EEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeE
Confidence 32210 000 111122346788999999999999999 8999999 565431 134565
Q ss_pred EEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC-eEEEEEEEEeee
Q psy2776 557 IFIDEETSTIAIYSVVRADTSTYTVTATNAAGS-TSLDLSLQVLGY 601 (803)
Q Consensus 557 ~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~-~s~s~~l~V~~~ 601 (803)
+.......+|.|.++..+|+|.|+|.|.|..+. ......|.|...
T Consensus 224 ~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~ 269 (282)
T 1qok_A 224 GSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKRA 269 (282)
T ss_dssp EEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred EecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEecc
Confidence 554556779999999999999999999986432 233456666543
No 315
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.63 E-value=2.5e-15 Score=142.64 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=61.3
Q ss_pred CeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-------------eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 153 DSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-------------RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 153 ~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-------------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
.+.+.+|++++|.|.+.+ |.+.|.|+|++..+.. .++.......+|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456779999999999854 8889999998864321 12333334578999999999999999999998
Q ss_pred CcCeeeEEEEEEeee
Q psy2776 220 AGTAETSCTLLVQGK 234 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~ 234 (803)
.| ...+.|.|..+
T Consensus 83 ~~--~~~~~L~V~~~ 95 (171)
T 1ccz_A 83 TD--TMKFFLYVLEM 95 (171)
T ss_dssp CS--CEEEEEEEECC
T ss_pred CC--cEEEEEEEECc
Confidence 87 56677777654
No 316
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.62 E-value=1.4e-15 Score=154.44 Aligned_cols=172 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--eeec-----------------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AEIT-----------------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~i~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.+ .+.+.|+|.. ..+. ...++.+..+ .+...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA 88 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999999876 5789999853 2110 1245555443 3467999999999
Q ss_pred CcCeEEEEEEEcCCCC---------e----EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEE
Q psy2776 574 ADTSTYTVTATNAAGS---------T----SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQ 640 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~---------~----s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (803)
+|+|.|.|.+.|..|. . .....|.|...
T Consensus 89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~--------------------------------------- 129 (257)
T 3bn9_D 89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA--------------------------------------- 129 (257)
T ss_dssp GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS---------------------------------------
T ss_pred hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC---------------------------------------
Confidence 9999999999997651 1 12235555331
Q ss_pred EEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC
Q psy2776 641 VFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK 718 (803)
Q Consensus 641 ~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~ 718 (803)
...+|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+.....
T Consensus 130 ----------------------------~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~ 181 (257)
T 3bn9_D 130 ----------------------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF 181 (257)
T ss_dssp ----------------------------CCBCCEECCCCC-----------CCCEEEEEBSSCCEEEETTTTCCSSCEEC
T ss_pred ----------------------------CCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEec
Confidence 1124544332222345679999999999986 877 8999999886432111
Q ss_pred -eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 719 -KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 719 -~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
..+..++. .+.|.|..+ ..+| |.|+|.|.|..+....
T Consensus 182 ~~~~~~~g~y~~~s~L~I~~~-~~~~-g~YtC~v~n~~~~~~~ 222 (257)
T 3bn9_D 182 PAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKV 222 (257)
T ss_dssp CCEECTTSCEEEEEECCCC---------CEEEEEEEGGGTEEE
T ss_pred CCeEcCCCCEEEEEEEEEccc-ccCC-CeEEEEEEecCCCcCE
Confidence 01111222 345788887 4567 9999999997665443
No 317
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=155.45 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=114.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeC--Cee------------ecCC----CcEEEEec-CCeEEEEEeeeccCcCe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKN--GAE------------ITDS----KACRIFID-EETSTIAIYSVVRADTS 577 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~--g~~------------i~~~----~~~~~~~~-~~~~~L~i~~v~~~dsG 577 (803)
...+.+|++++|.|.+. .+.+.+.|+|. +.. ...+ .++.+... .....|.|.+++.+|+|
T Consensus 35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 113 (268)
T 3pl6_D 35 NKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSA 113 (268)
T ss_dssp EEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCE
T ss_pred EEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCE
Confidence 57789999999999987 57789999982 221 1111 45554432 33579999999999999
Q ss_pred EEEEEEEcC--CCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 578 TYTVTATNA--AGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 578 ~Y~C~a~n~--~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
.|.|.+.|. .+.......|.|....
T Consensus 114 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 140 (268)
T 3pl6_D 114 VYLCATSALGDTQYFGPGTRLTVLEDL----------------------------------------------------- 140 (268)
T ss_dssp EEEEEEESSSSSCEECCCEEEEEESCG-----------------------------------------------------
T ss_pred EEEEEEecCCCceeeCCcEEEEEecCc-----------------------------------------------------
Confidence 999999984 2233334455554310
Q ss_pred eeeeeeecccCCCCCCCCee-EeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCeEEE--------ee
Q psy2776 656 ELVALATHATLGSPGQAPLF-IERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKKREI--------FD 724 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~-~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~~~~--------~~ 724 (803)
....+|.+ +..+....+.+|+.++|.|.+.|.|++ .+.|+++|.++..+.+.... .+
T Consensus 141 ------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 208 (268)
T 3pl6_D 141 ------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALND 208 (268)
T ss_dssp ------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTT
T ss_pred ------------ccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCC
Confidence 00113433 333444556679999999999997654 89999999988653211100 11
Q ss_pred Cc---eEEEEEecCCCCCC-ceeEEEEEEccCccee
Q psy2776 725 GE---NIILELKEADSETD-AGDYKVVATNELGSAT 756 (803)
Q Consensus 725 ~~---~~~L~i~~v~~~~D-~G~Y~C~a~N~~G~~~ 756 (803)
+. ...|.|... ..+| +|.|+|.|.|......
T Consensus 209 ~~~~~~s~l~i~~~-~~~d~~g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 209 SRYSLSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 243 (268)
T ss_dssp CCEEEEEEEEEEHH-HHSCTTCEEEEEEEECCBCTT
T ss_pred CcEEEEEEEEEcHH-HhccCCCEEEEEEEcCCCCCC
Confidence 11 245788877 3455 9999999999876654
No 318
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.62 E-value=2e-14 Score=139.03 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=67.1
Q ss_pred eeeecCCcEEEEEEECccCCC--eeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeeeEEEEEE
Q psy2776 154 SVAGFQSSVTLECVVSGVPTP--DIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETSCTLLV 231 (803)
Q Consensus 154 ~~v~~G~~~~L~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~l~V 231 (803)
+.+.+|++++|.|.+ +.|.| .|.|++.+..+ .+.........|.|.+++.+|+|.|.|.|.|..+....++.|.|
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV 93 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence 588899999999999 88888 99999976555 33344566788999999999999999999999888778889999
Q ss_pred eeee
Q psy2776 232 QGKE 235 (803)
Q Consensus 232 ~~~~ 235 (803)
...|
T Consensus 94 ~~~P 97 (210)
T 1gsm_A 94 YAFP 97 (210)
T ss_dssp EBCC
T ss_pred EecC
Confidence 8764
No 319
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.62 E-value=6.7e-15 Score=148.64 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=110.7
Q ss_pred CCceeeeccccceeEEEEe-cCCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceeee
Q psy2776 312 LPSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 390 (803)
Q Consensus 312 ~~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~ 390 (803)
.|....+.+|++++|.|.+ +.|.+.+.|+|+...- .....+...+. ......+.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~--------~~~~~~~r--------------- 61 (242)
T 2znx_A 7 SPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHE--SPRLLIKYASQ--------SISGIPSR--------------- 61 (242)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTS--CCEEEEETTTE--------ECTTSCTT---------------
T ss_pred cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCC--CceEEEEeccc--------cCCCCCCC---------------
Confidence 3555677889999999999 7888999999863100 00111100000 00000000
Q ss_pred eeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccC
Q psy2776 391 WLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKAD 470 (803)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 470 (803)
..+...++..+|+|.+++.+|+|.|.|.+.+..+.....
T Consensus 62 -----------------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~------------------ 100 (242)
T 2znx_A 62 -----------------------FSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGG------------------ 100 (242)
T ss_dssp -----------------------EEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC------------------
T ss_pred -----------------------EEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECC------------------
Confidence 111223456789999999999999999999875321111
Q ss_pred cccCCchhhhhcccccccccccceeeeccCCCCC---------CccceeeeccccceEEeecceeEEEEEEcCcC--CCe
Q psy2776 471 TRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQ---------QPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFP--RPE 539 (803)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~---------~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p--~~~ 539 (803)
...|.|..+|. .+.+.+... ....+.+|++++|.|.+.+.| .+.
T Consensus 101 -----------------------~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~G~~v~L~C~~~g~~~~~~~ 155 (242)
T 2znx_A 101 -----------------------GTKLEITGGGGSGGGGSGGGGSDIQLQES--GPSLVKPSQTLSLTCSVTGDSITSDY 155 (242)
T ss_dssp -----------------------CEEEEEC---------------CCEEEEE--CCSEECTTSCEEEEEEEESSCGGGSC
T ss_pred -----------------------CEEEEEcCCCCCCcccccccccceeeecC--CcceecCCCeEEEEEEEEccccCCcc
Confidence 12233333332 011111111 124588999999999999876 478
Q ss_pred eEEeeC--Ceeec----------------CCCcEEEEec--CCeEEEEEeeeccCcCeEEEEEEEcC
Q psy2776 540 ISWMKN--GAEIT----------------DSKACRIFID--EETSTIAIYSVVRADTSTYTVTATNA 586 (803)
Q Consensus 540 v~W~~~--g~~i~----------------~~~~~~~~~~--~~~~~L~i~~v~~~dsG~Y~C~a~n~ 586 (803)
+.|+|+ +..+. ...++.+..+ ....+|.|.++..+|+|.|.|.|.|.
T Consensus 156 v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 156 XSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 999985 33221 1234554432 34579999999999999999999984
No 320
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.62 E-value=5e-15 Score=152.80 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=117.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe-----ecc----------ceeEE--EecCeeEEEEecCCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS-----LIK----------GRNIT--YENNVARFTVVNCSE 206 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~-----~~~----------~~~~~--~~~~~~~L~i~~v~~ 206 (803)
.+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|++. .+. ..++. ..++..+|.|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 3455666777889999999999999998889999998642 110 11222 233456899999999
Q ss_pred CcceEEEEEEEcCCcC-eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecc
Q psy2776 207 SSEGRYTCKATNEAGT-AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARW 285 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g~-~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (803)
+|+|.|+|.+.|..+. ......|.|...+...... ..
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~---~~--------------------------------------- 129 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEG---RS--------------------------------------- 129 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC------------------------------------------------------
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccc---cc---------------------------------------
Confidence 9999999999997654 2223556665442100000 00
Q ss_pred ccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeecC--eecc-------------
Q psy2776 286 TSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKKG--KEIK------------- 347 (803)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~g--~~l~------------- 347 (803)
....+.+....+....+.+|++++|.|.+ +.| .+.+.|+|++ ..+.
T Consensus 130 ----------------~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~ 193 (276)
T 3auv_A 130 ----------------GGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTY 193 (276)
T ss_dssp ---------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEE
T ss_pred ----------------cccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccc
Confidence 00000011111234556789999999999 555 5899999963 2210
Q ss_pred ----ccceeEEEEc--CceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 348 ----ESARHIITSR--GTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 348 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
...++.+..+ .....|.|.++..+|+|.|.|.+.|..
T Consensus 194 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 194 YADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp ECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred cccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 1234444443 345679999999999999999999973
No 321
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.61 E-value=2.6e-15 Score=152.66 Aligned_cols=129 Identities=15% Similarity=0.221 Sum_probs=84.3
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
.++...|+|.+++.+|+|.|+|.+.+..+..... ...|.
T Consensus 105 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~ 143 (252)
T 3bkj_L 105 SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGA-----------------------------------------GTKLE 143 (252)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEECSBSSCEECC-----------------------------------------CEEEE
T ss_pred cCCEEEEEECCCCcccCEEEEEEEEcCCccEECC-----------------------------------------CEEEE
Confidence 3456689999999999999999999875432211 12333
Q ss_pred cCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCC-Cc-EEEEecCC-----eEEEEEe
Q psy2776 499 IQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDS-KA-CRIFIDEE-----TSTIAIY 569 (803)
Q Consensus 499 v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~-~~-~~~~~~~~-----~~~L~i~ 569 (803)
|..++..|.+.+... ...+.+|+.++|.|.+.|. |++ .+.|+|+|..+..+ .. .......+ .+.|.|.
T Consensus 144 V~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~ 220 (252)
T 3bkj_L 144 LKRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 220 (252)
T ss_dssp ECCCCBCCEEEEECC---CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred EeCCCcCcEEEEeCC---ChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEc
Confidence 333222222222111 1112368999999999985 443 79999999988654 11 11111111 2579999
Q ss_pred eeccCcCeEEEEEEEcCCCCeE
Q psy2776 570 SVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
++..+|+|.|+|.|.|......
T Consensus 221 ~~~~~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 221 KDEYERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp HHHHHHCCEEEEEEECTTCSSC
T ss_pred chhccCCCeEEEEEEeCCCCCC
Confidence 9999999999999999876643
No 322
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.61 E-value=2.6e-15 Score=149.20 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=54.3
Q ss_pred cCeeeecCCcEEEEEEECccCCCe---eEEEEcCeeccc-----------------eeEE---------EecCeeEEEEe
Q psy2776 152 KDSVAGFQSSVTLECVVSGVPTPD---IKWYKDDSLIKG-----------------RNIT---------YENNVARFTVV 202 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p~p~---i~W~~~~~~~~~-----------------~~~~---------~~~~~~~L~i~ 202 (803)
.++.+..|++++|.|.+.+.+.+. |.|+|++..+.. .+.. ......+|.|.
T Consensus 9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 346678999999999999877663 899997643210 0011 11234679999
Q ss_pred cCCCCcceEEEEEEEcCCcCeeeE
Q psy2776 203 NCSESSEGRYTCKATNEAGTAETS 226 (803)
Q Consensus 203 ~v~~~d~G~Y~C~a~n~~g~~~~s 226 (803)
+++.+|+|.|+|.+.|..+.....
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~~ 112 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRRG 112 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEE
T ss_pred cCCHHHCcceEEEEEeCCCcceee
Confidence 999999999999999887755443
No 323
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.61 E-value=2.6e-15 Score=129.84 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=80.5
Q ss_pred ccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 515 ~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
+..+.+.+|+.+.|.|.+.|.|.|.++|+|+|..|..+.++.+..++...+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 20 p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 99 (107)
T 3knb_B 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAA 99 (107)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEE
Confidence 35688999999999999999999999999999999998888888777888999999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 100 ~l~V~~pP 107 (107)
T 3knb_B 100 AVTVLEPP 107 (107)
T ss_dssp EEEEEC--
T ss_pred EEEEEcCC
Confidence 99998765
No 324
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.61 E-value=2.5e-15 Score=150.90 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=55.7
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCC-C-eeEEEEcCe--ec----------c---ceeEE--EecCeeEEEEecCC
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPT-P-DIKWYKDDS--LI----------K---GRNIT--YENNVARFTVVNCS 205 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~-p-~i~W~~~~~--~~----------~---~~~~~--~~~~~~~L~i~~v~ 205 (803)
+.+.. +....+.+|++++|.|.+.+.+. + .+.|+|++. .+ . ..++. ..+...+|.|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 33444 66778899999999999987543 4 699999642 11 0 11222 23355689999999
Q ss_pred CCcceEEEEEEEcCCc
Q psy2776 206 ESSEGRYTCKATNEAG 221 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g 221 (803)
.+|+|.|+|.+.|..+
T Consensus 100 ~~D~G~Y~C~~~~~~~ 115 (234)
T 2j6e_L 100 SEDEADYYCATWDDSL 115 (234)
T ss_dssp STTCSEEEEEEEETTT
T ss_pred HHHCEEEEEEEEcCCc
Confidence 9999999999999877
No 325
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=127.27 Aligned_cols=94 Identities=26% Similarity=0.389 Sum_probs=87.9
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N 85 (103)
T 3qp3_A 7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDC-HTDDSGTYRAVCTN 85 (103)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCC-CcccCEEEEEEEEe
Confidence 37889988888999999999999999999999999999999999988988888888889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
..|..+..+.|.|++
T Consensus 86 ~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 86 YKGEASDYATLDVTG 100 (103)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEEC
Confidence 999999999999864
No 326
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.60 E-value=2.1e-15 Score=151.12 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=110.6
Q ss_pred ceEEeecceeEEEEEEcCc-CC-C-eeEEeeCCeee-cCCCcEEEEecCC----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF-PR-P-EISWMKNGAEI-TDSKACRIFIDEE----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~-p~-~-~v~W~~~g~~i-~~~~~~~~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
...+.+|+.+.|.|.+.|. |. | .+.|+++|..+ ............+ .+.|.|.++..+|+|.|+|.|.|..+
T Consensus 22 ~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~ 101 (231)
T 2w59_A 22 PGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEEL 101 (231)
T ss_dssp HHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred hhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCC
Confidence 3446789999999999985 64 4 99999999877 3322211111111 35799999999999999999999876
Q ss_pred CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 589 ~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
.......|.+.. .
T Consensus 102 ~~~~~~~v~~~~-------------------------------------------------------------------~ 114 (231)
T 2w59_A 102 PLPLSKSVYRNT-------------------------------------------------------------------G 114 (231)
T ss_dssp SSCEEEEECCCC-------------------------------------------------------------------S
T ss_pred CCceEEEEecCC-------------------------------------------------------------------C
Confidence 533333322110 0
Q ss_pred CCCCCeeEecc-ceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCCeE----EE--------ee-Cc---eEE
Q psy2776 669 PGQAPLFIERF-EEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKR----EI--------FD-GE---NII 729 (803)
Q Consensus 669 ~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~----~~--------~~-~~---~~~ 729 (803)
...+|.+.... ....+ .|+.++|.|.+.|+ | .+.|.|++||.++..+.... .. .+ +. .+.
T Consensus 115 ~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~ 193 (231)
T 2w59_A 115 PTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSK 193 (231)
T ss_dssp CCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEE
T ss_pred CCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEE
Confidence 00144433222 11122 35679999999996 4 36899999999986543111 11 22 22 256
Q ss_pred EEEecCCCCCCceeEEEEEEccCcce
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSA 755 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~ 755 (803)
|.|... ..+|.|.|+|.|.|.....
T Consensus 194 L~i~~~-~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 194 MSVETA-KWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp EEEEHH-HHHTTCCEEEEEECTTSTT
T ss_pred EEEeHH-HcCCCCcEEEEEEcCCCCC
Confidence 888877 4678999999999987654
No 327
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.60 E-value=1.3e-14 Score=147.91 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=60.3
Q ss_pred ceEEeecceeEEEEEEcCcCCC-eeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRP-EISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|++++|.|.+.+.|.+ .+.|+|+ +..+. ...++.........+|.|.++..+|+|.|.|
T Consensus 150 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 229 (257)
T 3gkz_A 150 IMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC 229 (257)
T ss_dssp EEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred eEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence 5678899999999999998887 8999984 32221 0144555545566789999999999999999
Q ss_pred EEEcCCCCe-EEEEEEEEee
Q psy2776 582 TATNAAGST-SLDLSLQVLG 600 (803)
Q Consensus 582 ~a~n~~g~~-s~s~~l~V~~ 600 (803)
.|.|..... .....|.|..
T Consensus 230 ~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 230 HQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp EECSSSSCEECCCEEEEECC
T ss_pred EEccCCceEEcCCEEEEEEe
Confidence 998854321 2223455544
No 328
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.60 E-value=3.8e-15 Score=142.68 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=80.4
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++.+|+|.|+|.+.+.. .... .+.|.|.
T Consensus 67 ~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~------------------------------------------~~~L~V~ 103 (180)
T 2dru_A 67 TNGALRIYNVSKEDRGDYYMRMLHET-EDQW------------------------------------------KITMEVY 103 (180)
T ss_dssp TTCCEEECSCCGGGCEEEEEEEESSS-EEEE------------------------------------------EEEEEEE
T ss_pred CCccEEEcCCCHHHCeEEEEEEEcCC-eEEE------------------------------------------EEEEEEE
Confidence 44569999999999999999998765 2222 4556666
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEE
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTY 579 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y 579 (803)
.++..|.+. ..+..+.|.|.+ .| |.|.+.|++++..+.. ....+|.+.. .+|+|.|
T Consensus 104 ~~~~~P~i~-----------~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~---------~~~~~l~~~~--~~d~g~Y 160 (180)
T 2dru_A 104 EMVSKPMIY-----------WECSNATLTCEVLEG-TDVELKLYQGKEHLRS---------LRQKTMSYQW--TNLRAPF 160 (180)
T ss_dssp CCCCCCEEE-----------EEGGGTEEEEECSSC-TTCEEEEEETTEEEEE---------ESSSEEEEEC--SCCSSCE
T ss_pred CCCCCCEEE-----------ecCCCEEEEEEeCCC-CCCEEEEEECCeECcC---------CCCCEEEEEE--hhcCccE
Confidence 555444332 245679999999 66 9999999999988751 1234555533 7899999
Q ss_pred EEEEEcCCCCeEEEEEE
Q psy2776 580 TVTATNAAGSTSLDLSL 596 (803)
Q Consensus 580 ~C~a~n~~g~~s~s~~l 596 (803)
+|.|.|..+..+....+
T Consensus 161 ~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 161 KCKAVNRVSQESEMEVV 177 (180)
T ss_dssp EEEEEETTEEEEEEECC
T ss_pred EEEEecCcCccccceeE
Confidence 99999999877666544
No 329
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.4e-14 Score=145.91 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=111.2
Q ss_pred cCeeeecCCcEEEEEEECcc--CCCeeEEEEcCe--ec-------------ccee--EEEecCeeEEEEecCCCCcceEE
Q psy2776 152 KDSVAGFQSSVTLECVVSGV--PTPDIKWYKDDS--LI-------------KGRN--ITYENNVARFTVVNCSESSEGRY 212 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~~--~~-------------~~~~--~~~~~~~~~L~i~~v~~~d~G~Y 212 (803)
....+.+|++++|.|.+.+. |.+.+.|+|... .. ...+ ....+...+|.|.+++.+|+|.|
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y 89 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY 89 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence 34778899999999999876 778899998531 11 0112 22233456899999999999999
Q ss_pred EEEEEcCCcCee---eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecccccc
Q psy2776 213 TCKATNEAGTAE---TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDL 289 (803)
Q Consensus 213 ~C~a~n~~g~~~---~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (803)
.|.+.|..+... ....|.|...+........+.
T Consensus 90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~-------------------------------------------- 125 (256)
T 3ux9_B 90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVY-------------------------------------------- 125 (256)
T ss_dssp EEEEEETTTTEEEECCCEEEEEC---------------------------------------------------------
T ss_pred EEEEEECCCCceEECCCEEEEEECCCCCcCccceeE--------------------------------------------
Confidence 999999765322 235677765531110000000
Q ss_pred ccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeec--Ceecc-----------------
Q psy2776 290 ESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKK--GKEIK----------------- 347 (803)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~--g~~l~----------------- 347 (803)
+.........+.+ ...+ ...+.+|++++|.|.+ +.+ .+.+.|+|+ +..+.
T Consensus 126 ------~~~~~~~~~~~~~-~~~~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (256)
T 3ux9_B 126 ------YTKLSSSGSEVQL-VESG-GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADS 197 (256)
T ss_dssp ---------------CCEE-EEEC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGG
T ss_pred ------EeecCCCccceeE-EcCC-CeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCcc
Confidence 0000000001111 1112 2336779999999999 555 789999987 33221
Q ss_pred ccceeEEEEc--CceeEEEEeecCCCCCccEEEEEeccc
Q psy2776 348 ESARHIITSR--GTQRKLVIKRVTQDDETDIGVLALNVK 384 (803)
Q Consensus 348 ~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~c~~~~~~ 384 (803)
...++.+..+ +....|.|.++..+|+|.|.|.+.|..
T Consensus 198 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 198 VKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred ccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 1124444443 345679999999999999999999864
No 330
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.59 E-value=1.9e-15 Score=148.67 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=99.6
Q ss_pred eecceeEEEEEEcCcCC----CeeEEeeCCeeecCCCcE-EEEecCCe----EEEEEeeeccCcCeEEEEEEEcCCCCeE
Q psy2776 521 SVKSQWKVEVKYFGFPR----PEISWMKNGAEITDSKAC-RIFIDEET----STIAIYSVVRADTSTYTVTATNAAGSTS 591 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~----~~v~W~~~g~~i~~~~~~-~~~~~~~~----~~L~i~~v~~~dsG~Y~C~a~n~~g~~s 591 (803)
.+|+.+.|.|.+.|.++ +.+.|+|+|..+...... ......+. ..|.|......|+|.|+|.|.|..+...
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 67999999999998763 499999999887654211 11111111 1233333334459999999999887653
Q ss_pred EEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCC
Q psy2776 592 LDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQ 671 (803)
Q Consensus 592 ~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~ 671 (803)
.+..+.... ....
T Consensus 96 ~~~~v~~~~-------------------------------------------------------------------~~~~ 108 (207)
T 1l6x_A 96 IEKTISKAK-------------------------------------------------------------------GQPR 108 (207)
T ss_dssp EEEEECCCC-------------------------------------------------------------------SCCB
T ss_pred eEEEeccCC-------------------------------------------------------------------CCCc
Confidence 332221100 0011
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC--eEEEeeCce---EEEEEecCCCCCCceeE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK--KREIFDGEN---IILELKEADSETDAGDY 744 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~~D~G~Y 744 (803)
+|.+...+.......|+.++|.|.+.|. |. +.+.|+++|.++..... .....++.. ..|.|... ..+|.|.|
T Consensus 109 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~-~~~~~g~Y 187 (207)
T 1l6x_A 109 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS-RWQQGNVF 187 (207)
T ss_dssp CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCCE
T ss_pred CCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHH-HcCCCCEE
Confidence 4554433222222246679999999996 54 38999999998864221 111223322 23556554 23579999
Q ss_pred EEEEEccCcc
Q psy2776 745 KVVATNELGS 754 (803)
Q Consensus 745 ~C~a~N~~G~ 754 (803)
+|.|.|....
T Consensus 188 tC~a~n~~l~ 197 (207)
T 1l6x_A 188 SCSVMHEALH 197 (207)
T ss_dssp EEEEECTTSG
T ss_pred EEEEEcCCcC
Confidence 9999998654
No 331
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.59 E-value=6.8e-15 Score=146.95 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+..+|+|.+++.+|+|.|.|.+.+..+..... ...|.|.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~L~V~ 115 (227)
T 1mju_H 77 STAYMQLSSLTSDDSAVYYCANKLGWFPYWGQ-----------------------------------------GTLVTVS 115 (227)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEETTEEEECC-----------------------------------------CEEEEEC
T ss_pred CeEEEEECCCCcccCEEEEEEECCCCceEEcC-----------------------------------------cEEEEEc
Confidence 56789999999999999999998853221110 2233443
Q ss_pred C-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecC---CeEEEEEeeeccC
Q psy2776 501 S-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDE---ETSTIAIYSVVRA 574 (803)
Q Consensus 501 ~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v~~~ 574 (803)
. ++..|.+..... ...+.+|+.++|.|.+.|. |.+ .+.|+++|..+.......+...+ ..+.|.|.++..+
T Consensus 116 ~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~ 192 (227)
T 1mju_H 116 AAKTTAPSVYPLAP---VCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWP 192 (227)
T ss_dssp SSCCBCCEEEEECC---CC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTT
T ss_pred CCCCCCCEEEEecC---CccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcC
Confidence 3 222222222111 1235679999999999986 766 99999998764211000011111 1357999998887
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEeeeEe
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLGYII 603 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~ 603 (803)
| |.|+|.|.|..+.......+.+..+|+
T Consensus 193 ~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~ 220 (227)
T 1mju_H 193 S-QSITCNVAHPASSTKVDKKIEPRGPTI 220 (227)
T ss_dssp T-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred C-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence 8 999999999888877888888877764
No 332
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.59 E-value=1.5e-14 Score=144.01 Aligned_cols=169 Identities=11% Similarity=0.149 Sum_probs=111.3
Q ss_pred cCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c-----------------cceeEEEe----cCeeEEEEec
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I-----------------KGRNITYE----NNVARFTVVN 203 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~-----------------~~~~~~~~----~~~~~L~i~~ 203 (803)
....+.+|++++|.|.+.+.| .+.+.|+|+. .. + ...++... .+..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 87 (222)
T 1q9r_B 8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT 87 (222)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence 456788999999999998755 6789999853 11 1 01223322 2356899999
Q ss_pred CCCCcceEEEEEEEcCCc-----CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccc
Q psy2776 204 CSESSEGRYTCKATNEAG-----TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 278 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g-----~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (803)
++.+|+|.|.|.+.|..+ .......|.|...+. .
T Consensus 88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~--~--------------------------------------- 126 (222)
T 1q9r_B 88 LRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT--T--------------------------------------- 126 (222)
T ss_dssp CCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC--B---------------------------------------
T ss_pred CCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC--C---------------------------------------
Confidence 999999999999998764 122335666654210 0
Q ss_pred cceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEE
Q psy2776 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIIT 355 (803)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~ 355 (803)
.+.+....+. ..+.+|+.+.|.|.+ + .|.+ .+.|+++|..+.........
T Consensus 127 --------------------------~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~ 179 (222)
T 1q9r_B 127 --------------------------PPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL 179 (222)
T ss_dssp --------------------------CCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEE
T ss_pred --------------------------CCeEEEcccc-ccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccc
Confidence 0000000111 113469999999999 5 4887 99999999877532111122
Q ss_pred EcCc---eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 356 SRGT---QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 356 ~~~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
.++. ...|.|..+..+| |.|+|.|.|..+...+
T Consensus 180 ~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~ 215 (222)
T 1q9r_B 180 QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV 215 (222)
T ss_dssp ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence 3332 2458899999889 9999999998876543
No 333
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.59 E-value=4.5e-15 Score=170.71 Aligned_cols=165 Identities=14% Similarity=0.180 Sum_probs=119.8
Q ss_pred ceEEeecceeEEEEEE-cCcCCCeeEEeeCCeeecC------------CCcEEEEecCCeEEEEEeeeccCcCeEEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKY-FGFPRPEISWMKNGAEITD------------SKACRIFIDEETSTIAIYSVVRADTSTYTVTA 583 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~g~~i~~------------~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a 583 (803)
...+.+|++++|.|.+ .+.|.+.+.|+|++..+.. ..+..+. ..++|.|.+++.+|+|.|+|.|
T Consensus 375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G~Y~C~~ 451 (581)
T 3o3u_N 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL---PNGSLFLPAVGIQDEGIFRCQA 451 (581)
T ss_dssp EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC---TTSCEEESSCCGGGCEEEEEEE
T ss_pred ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc---CCceEEEeccccccCeEEEEEE
Confidence 4678899999999998 7889999999998763211 1122221 1247999999999999999999
Q ss_pred EcCCCCe-EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeee
Q psy2776 584 TNAAGST-SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALAT 662 (803)
Q Consensus 584 ~n~~g~~-s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~ 662 (803)
.|..|.. ...+.|.|..+|
T Consensus 452 ~n~~~~~~~~~~~l~V~~~~------------------------------------------------------------ 471 (581)
T 3o3u_N 452 MNRNGKETKSNYRVRVYQIP------------------------------------------------------------ 471 (581)
T ss_dssp ECTTSCEEEEEEEEEEEBCC------------------------------------------------------------
T ss_pred EcCCCceeEEEEEEEEEcCC------------------------------------------------------------
Confidence 9999987 778888886643
Q ss_pred cccCCCCCCCCeeEeccceeEEecCC-eEEEEEEEee-cCCCceEEeeCCeeccCCCC-eEEEe------e-C---ceEE
Q psy2776 663 HATLGSPGQAPLFIERFEEKTVKEKG-TIRLMAKVKA-SPAPSIVWFRNNKPLLSSPK-KREIF------D-G---ENII 729 (803)
Q Consensus 663 ~~~~~~~~~~p~~~~~~~~~~v~~g~-~v~L~C~~~g-~p~~~v~W~~~~~~l~~~~~-~~~~~------~-~---~~~~ 729 (803)
..|.+..... .+.+|+ .+.|.|.+.| .|.|.+.|++||.++..... +.+.. + + -.++
T Consensus 472 --------~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~ 541 (581)
T 3o3u_N 472 --------GKPEIVDSAS--ELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSE 541 (581)
T ss_dssp --------CCCEEESCCS--EECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEE
T ss_pred --------CCCEEEcCCc--ccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEE
Confidence 1344433322 244554 5567999998 59999999999999875433 32221 1 1 1357
Q ss_pred EEEecCCC-CCCceeEEEEEEccCcce
Q psy2776 730 LELKEADS-ETDAGDYKVVATNELGSA 755 (803)
Q Consensus 730 L~i~~v~~-~~D~G~Y~C~a~N~~G~~ 755 (803)
|.|..+ + .++.|.|+|.|+|.++..
T Consensus 542 L~i~~~-~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 542 LMVTPA-RGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp EEECCC-TTSCSCCCEEEEEECSSCSS
T ss_pred EEEEec-cccCCCceEEEEEeccCCCC
Confidence 999988 5 555899999999997544
No 334
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.59 E-value=1.7e-14 Score=146.05 Aligned_cols=178 Identities=11% Similarity=0.150 Sum_probs=113.2
Q ss_pred eeccCcCeeeecCCcEEEEEEECccC-----CCeeEEEEcC--eecc-------------ceeEE--EecCeeEEEEecC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVP-----TPDIKWYKDD--SLIK-------------GRNIT--YENNVARFTVVNC 204 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p-----~p~i~W~~~~--~~~~-------------~~~~~--~~~~~~~L~i~~v 204 (803)
+...+..+.+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ..++. ..++..+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 83 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 83 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence 34456678889999999999999877 6889999853 1110 11222 2344568999999
Q ss_pred CCCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceee
Q psy2776 205 SESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLA 283 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (803)
+.+|+|.|.|.+.|..+.. ...+.|.|...+...... .
T Consensus 84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~-----~------------------------------------ 122 (247)
T 1svz_A 84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGG-----S------------------------------------ 122 (247)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------------------------------------------
T ss_pred CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccc-----c------------------------------------
Confidence 9999999999999976542 223566665442100000 0
Q ss_pred ccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeecC--eecc-----------
Q psy2776 284 RWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKKG--KEIK----------- 347 (803)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~g--~~l~----------- 347 (803)
....+.+ .+...+. ..+.+|++++|.|.+ +.+ .+.+.|+|++ ..+.
T Consensus 123 ----------------~~~~~~~-~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 184 (247)
T 1svz_A 123 ----------------GGGGSEV-QLQQSGP-ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDE 184 (247)
T ss_dssp ---------------------CC-EEEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCC
T ss_pred ----------------ccccCce-EEeCCCc-eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCc
Confidence 0000001 1112222 346789999999999 654 5799999963 2110
Q ss_pred ------ccceeEEEE--cCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 ------ESARHIITS--RGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 ------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+.. .+....|.|.++..+|+|.|.|.+.|.
T Consensus 185 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 185 PTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred cccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 023444443 344578999999999999999999985
No 335
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.59 E-value=2.1e-15 Score=151.70 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=108.4
Q ss_pred EeecceeEEEEEEcCc---CCC-eeEEeeCCeeecCCCcE-EEEecC----CeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGF---PRP-EISWMKNGAEITDSKAC-RIFIDE----ETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~---p~~-~v~W~~~g~~i~~~~~~-~~~~~~----~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+.++|.|.+.|. |.+ .+.|+|++..+...... ...... ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 5689999999999987 766 89999998776532110 001111 23589999999999999999999988764
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.... ...
T Consensus 109 ~~~~~v~~~~-------------------------------------------------------------------~~~ 121 (239)
T 1i1c_A 109 PIEKSISKPE-------------------------------------------------------------------GTP 121 (239)
T ss_dssp CEEEEECCCS-------------------------------------------------------------------SCC
T ss_pred CcEEEEecCC-------------------------------------------------------------------CCC
Confidence 2222221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC--eEEEeeCce---EEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK--KREIFDGEN---IILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~--~~~~~~~~~---~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|. |. ..|.|++||.++..... .....++.. ..|.|... ..+|.|.
T Consensus 122 ~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~-~~~~~g~ 200 (239)
T 1i1c_A 122 RGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKE-TWQQGNT 200 (239)
T ss_dssp BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCC
T ss_pred cCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChh-hcCCCCE
Confidence 25555444333223358899999999995 54 37999999998854321 111223332 23555544 2347899
Q ss_pred EEEEEEccCcce
Q psy2776 744 YKVVATNELGSA 755 (803)
Q Consensus 744 Y~C~a~N~~G~~ 755 (803)
|+|.|.|.....
T Consensus 201 YtC~v~n~~l~~ 212 (239)
T 1i1c_A 201 FTCSVLHEGLEN 212 (239)
T ss_dssp EEEEEECTTSGG
T ss_pred EEEEEECCCCCC
Confidence 999999987653
No 336
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.59 E-value=1.1e-14 Score=143.40 Aligned_cols=169 Identities=11% Similarity=0.140 Sum_probs=109.2
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eec-----------------cceeEEEe----cCeeEEEEecCC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLI-----------------KGRNITYE----NNVARFTVVNCS 205 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~-----------------~~~~~~~~----~~~~~L~i~~v~ 205 (803)
+....+.+|++++|.|.+.+.| .+.+.|+|++ ... ...++... .+..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 4556788999999999998765 4789999853 111 01223222 234689999999
Q ss_pred CCcceEEEEEEEcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeecc
Q psy2776 206 ESSEGRYTCKATNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARW 285 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (803)
.+|+|.|+|.+.|.. .......|.|...+. .
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~--~---------------------------------------------- 117 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKT--T---------------------------------------------- 117 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCCC--B----------------------------------------------
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCCC--C----------------------------------------------
Confidence 999999999999864 112234566653210 0
Q ss_pred ccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cC-Cce-eeEEeecCeeccccceeEEEEcCc---
Q psy2776 286 TSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SS-PDI-QVKWLKKGKEIKESARHIITSRGT--- 359 (803)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~-p~~-~i~W~~~g~~l~~~~~~~~~~~~~--- 359 (803)
. +.+....+. ..+.+|+.+.|.|.+ +. |.+ .+.|+++|..+.......+...+.
T Consensus 118 -----------------~--P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 3d9a_H 118 -----------------P--PSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL 177 (210)
T ss_dssp -----------------C--CEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE
T ss_pred -----------------C--CEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEE
Confidence 0 000000111 123469999999999 54 877 999999988653211111112232
Q ss_pred eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 360 QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 360 ~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
...|.|..+..+| |.|+|.|.|..+...+
T Consensus 178 ~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 206 (210)
T 3d9a_H 178 SSSVTVPSSTWPS-ETVTCNVAHPASSTKV 206 (210)
T ss_dssp EEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred EEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence 3468999988877 9999999998877554
No 337
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.59 E-value=5.3e-15 Score=149.74 Aligned_cols=180 Identities=14% Similarity=0.185 Sum_probs=117.4
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEE----------------cCeeccc----eeEEE---ecCeeEEEEec
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYK----------------DDSLIKG----RNITY---ENNVARFTVVN 203 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~----------------~~~~~~~----~~~~~---~~~~~~L~i~~ 203 (803)
+...+..+.+.+|++++|.|.+.+.+.+.+.|+| ++..... .++.. ..+..+|.|.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 83 (246)
T 4dzb_B 4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS 83 (246)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence 4445667888999999999999999999999999 2221111 22222 13456899999
Q ss_pred CCCCcceEEEEEEEcCCcCe----eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 204 CSESSEGRYTCKATNEAGTA----ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~~----~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
++.+|+|.|.|.+.|..+.. .....|.|........
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~---------------------------------------- 123 (246)
T 4dzb_B 84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVF---------------------------------------- 123 (246)
T ss_dssp CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCB----------------------------------------
T ss_pred CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCccc----------------------------------------
Confidence 99999999999999865421 1234565554210000
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCc--eeeEEeecCeeccccceeEEE-
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPD--IQVKWLKKGKEIKESARHIIT- 355 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~--~~i~W~~~g~~l~~~~~~~~~- 355 (803)
.+.+....+....+.+|+.+.|.|.+ +.|+ ..+.|+|+|..+.........
T Consensus 124 -------------------------~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~ 178 (246)
T 4dzb_B 124 -------------------------PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQP 178 (246)
T ss_dssp -------------------------CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSC
T ss_pred -------------------------CCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCccccccc
Confidence 00111111222334559999999999 5443 389999999998764332211
Q ss_pred -------EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeee
Q psy2776 356 -------SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 356 -------~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~ 391 (803)
.++.. ..|.|.....+| .|.|+|.+.|........|
T Consensus 179 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~~~~ 225 (246)
T 4dzb_B 179 LKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEW 225 (246)
T ss_dssp EESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTTSCC
T ss_pred ccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCcccc
Confidence 12322 347888888888 9999999999876655555
No 338
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.59 E-value=3.8e-14 Score=144.43 Aligned_cols=188 Identities=11% Similarity=0.109 Sum_probs=114.6
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc--------------ceeEEE----ecCeeEEEEecCC
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK--------------GRNITY----ENNVARFTVVNCS 205 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~--------------~~~~~~----~~~~~~L~i~~v~ 205 (803)
.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|... ... ..++.. .....+|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 45556677889999999999999988999999998431 100 111111 1345689999999
Q ss_pred CCcceEEEEEEEcCCcCee----eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 206 ESSEGRYTCKATNEAGTAE----TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~~----~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
.+|+|.|.|.+.|..+... ....|.|........ +...
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~--------~~~~------------------------------ 126 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSG--------GGGS------------------------------ 126 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC------------------------------------------------
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcC--------CCCc------------------------------
Confidence 9999999999999765321 124555543100000 0000
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEecCCceeeEEeecC--eecc------------
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVELSSPDIQVKWLKKG--KEIK------------ 347 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~p~~~i~W~~~g--~~l~------------ 347 (803)
...... ..+....+...|....+.+|++++|.|.+....+.+.|+|.. ..+.
T Consensus 127 -------------~~~~~~-~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 192 (256)
T 3tf7_C 127 -------------GGGGSG-GGGSEAAVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIYYSYGAGNLQ 192 (256)
T ss_dssp -------------------------CCEEESCSEEEEETTCCEEECEEECSCCSEEEEEEECTTSCEEEEEEEESTTCCE
T ss_pred -------------CcccCC-CCcCccEEEecCCEEEEeCCCcEEEEEEcCCCceEEEEEEECCCCCeEEEEEEcCCCcee
Confidence 000000 000111223334555666899999999993337799999842 1110
Q ss_pred ---ccceeEEEE-cCceeEEEEeecCCCCCccEEEEEecccc
Q psy2776 348 ---ESARHIITS-RGTQRKLVIKRVTQDDETDIGVLALNVKS 385 (803)
Q Consensus 348 ---~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~c~~~~~~~ 385 (803)
...++.+.. ......|.|.++..+|+|.|.|.+.|..+
T Consensus 193 ~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 234 (256)
T 3tf7_C 193 IGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG 234 (256)
T ss_dssp ECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred cCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence 011222222 23456899999999999999999998754
No 339
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.59 E-value=2.1e-15 Score=150.01 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=92.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCc-eeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEA-GTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
+...|.|.+++.+|+|.|+|.+.+.. +.... .+.|.|
T Consensus 76 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~------------------------------------------~~~L~V 113 (221)
T 3eow_R 76 RDASLRMFGLRVEDEGSYTCLFVTFPQGSRSV------------------------------------------DIWLRV 113 (221)
T ss_dssp CCCEEECCCSSCCCCSCBEEEEEESSSCSCEE------------------------------------------ECCCCC
T ss_pred CCceEEEccCChHHCeEEEEEEEeCCCCceEE------------------------------------------EEEEEE
Confidence 45679999999999999999999865 44333 566777
Q ss_pred CCCCCCccceeeeccccceEEeecceeE-EEEEEc-CcCCCeeEEeeCCeeecCCCcEEEEec---CCeEEEEEeeeccC
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWK-VEVKYF-GFPRPEISWMKNGAEITDSKACRIFID---EETSTIAIYSVVRA 574 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~-l~C~~~-g~p~~~v~W~~~g~~i~~~~~~~~~~~---~~~~~L~i~~v~~~ 574 (803)
..+|.+.... . ... .+|+.+. |.|.+. |.|.|.+.|++++.............. ...+.|.|.++..+
T Consensus 114 ~~~P~~~~~~---~---~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~ 186 (221)
T 3eow_R 114 LAKPQNTAEV---Q---KVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQV 186 (221)
T ss_dssp CCCCEEEEEE---E---CCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSCC
T ss_pred EECCCceeec---C---Ccc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHHH
Confidence 7777653211 1 111 5688884 999987 899999999987543322111000001 12468999999999
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
|.|.|+|.|.|..+.....+.|....
T Consensus 187 d~g~ytC~a~n~~~~~~~~~~v~~~~ 212 (221)
T 3eow_R 187 DGKQVTCKVEHESFEKPQLLTVSLTV 212 (221)
T ss_dssp CCCCEEEEECCSCSSSCEEEEECCCC
T ss_pred CCCeEEEEEECCCCCCCeEEEEEEEE
Confidence 99999999999998877776665533
No 340
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=123.71 Aligned_cols=94 Identities=20% Similarity=0.459 Sum_probs=87.4
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n 83 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT-DTSDSGLYTCTVKN 83 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSC-CGGGCEEEEEEEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCC-CcccCEEEEEEEEe
Confidence 37888888888999999999999999999999999999999999889998888888889999999 78999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
..|..+..+.|.|++
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 84 SAGSVSSSCKLTIKA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEeEEEEEEEEe
Confidence 999999999998863
No 341
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.58 E-value=1.3e-14 Score=123.87 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=84.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe-eCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF-DGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+.. .+....|.|.++ +.+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~ 82 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV-TGEDSASIMVKAI 82 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSC-CGGGCEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCC-CcCCCEEEEEEEE
Confidence 37889888889999999999999999999999999999999998887766543 466778999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|.+|.....+.|.|..
T Consensus 83 N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 83 NIAGETSSHAFLLVQA 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCcEEEEEEEEEec
Confidence 9999999999998853
No 342
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.58 E-value=1.1e-14 Score=145.67 Aligned_cols=181 Identities=14% Similarity=0.139 Sum_probs=112.8
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---ec-------------CCCcEEEEecC--CeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---IT-------------DSKACRIFIDE--ETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i~-------------~~~~~~~~~~~--~~~~L~i~~v~~~ 574 (803)
...+.+|++++|.|.+.+. +.+.+.|+|.. .. +. ...++.+..+. +...|.|.+++.+
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 89 (230)
T 1ypz_F 10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE 89 (230)
T ss_dssp EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred EEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChh
Confidence 5778999999999999875 56789999853 11 10 12344444322 4578999999999
Q ss_pred cCeEEEEEEEcCC--CC--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 575 DTSTYTVTATNAA--GS--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 575 dsG~Y~C~a~n~~--g~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
|+|.|.|.+.+.. .. ......|.|.... .+.
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~--------------------------------------------~~l- 124 (230)
T 1ypz_F 90 DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSD--------------------------------------------KRL- 124 (230)
T ss_dssp GCSEEEEEECCTTTCCCCEECSCEEEEEECCC--------------------------------------------TTC-
T ss_pred hCEEEEEEEECCCCCcccccCCCEEEEEeccc--------------------------------------------ccC-
Confidence 9999999999851 11 1122355553100 000
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEee-CCeeccCCCCeEE-EeeCc
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFR-NNKPLLSSPKKRE-IFDGE 726 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~-~~~~l~~~~~~~~-~~~~~ 726 (803)
....+ ..|.+.. +....+..|+.++|.|.+.|. |. +.|.|++ +|..+..+....+ ..++.
T Consensus 125 --------------~~~~~-p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~ 188 (230)
T 1ypz_F 125 --------------DADIS-PKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDT 188 (230)
T ss_dssp --------------CSCCS-CCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTE
T ss_pred --------------cccCC-CCceEEC-CCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCC
Confidence 00000 0222322 333446679999999999987 76 5899999 8877753321111 22222
Q ss_pred ---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEE
Q psy2776 727 ---NIILELKEADSETDAGDYKVVATNELGSATHGARV 761 (803)
Q Consensus 727 ---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l 761 (803)
...|.|... .. | |.|+|.|.|..+.......+
T Consensus 189 ~~~~s~L~i~~~-~~-~-~~ytC~v~~~~~~~~~~~~~ 223 (230)
T 1ypz_F 189 YMKFSWLTVPER-AM-G-KEHRCIVKHENNKGGADQAI 223 (230)
T ss_dssp EEEEEEEEECGG-GT-T-SCEEEEEECSSCTTTSCEEE
T ss_pred EEEEEEEEEEhh-hC-C-CEEEEEEEECCCCCceeEee
Confidence 246888887 43 4 99999999998865444433
No 343
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.58 E-value=5.7e-15 Score=152.64 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=115.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e-----------c---CCCcEEEEec-CCeEEEEEeeeccCc
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I-----------T---DSKACRIFID-EETSTIAIYSVVRAD 575 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i-----------~---~~~~~~~~~~-~~~~~L~i~~v~~~d 575 (803)
....+.+|+++.|.|.+.+.|.+.+.|+|++ .. + . ...++.+..+ ....+|.|.+++.+|
T Consensus 32 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D 111 (279)
T 2wbj_D 32 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPED 111 (279)
T ss_dssp SEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGG
T ss_pred CeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccC
Confidence 3578899999999999988888999999864 11 0 0 1245555432 356799999999999
Q ss_pred CeEEEEEEEcCCC----C--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCC
Q psy2776 576 TSTYTVTATNAAG----S--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGL 649 (803)
Q Consensus 576 sG~Y~C~a~n~~g----~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~ 649 (803)
+|.|.|.|.|..+ . ......|.|....
T Consensus 112 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------- 144 (279)
T 2wbj_D 112 SSFYICSARDLTSGANNEQFFGPGTRLTVTEDL----------------------------------------------- 144 (279)
T ss_dssp CEEEEEEEEETTCBTSCCEEECCCEEEEEESCG-----------------------------------------------
T ss_pred CEEEEEEEcccccCCccceeeCCCEEEEEecCC-----------------------------------------------
Confidence 9999999999432 1 1122345553310
Q ss_pred CCCccceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeE---EE-
Q psy2776 650 GPEATTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKR---EI- 722 (803)
Q Consensus 650 ~~~s~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~---~~- 722 (803)
....+|.+... +....+.+|+.++|.|.+.|. |. +.|.|++||.++..+.... ..
T Consensus 145 ------------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~ 206 (279)
T 2wbj_D 145 ------------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKE 206 (279)
T ss_dssp ------------------GGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEES
T ss_pred ------------------CCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccc
Confidence 00114555432 333445679999999999997 54 6999999999886542210 00
Q ss_pred ----eeCc---eEEEEEecCCCCC-CceeEEEEEEccCccee
Q psy2776 723 ----FDGE---NIILELKEADSET-DAGDYKVVATNELGSAT 756 (803)
Q Consensus 723 ----~~~~---~~~L~i~~v~~~~-D~G~Y~C~a~N~~G~~~ 756 (803)
.++. ...|.|... ..+ |.|.|+|.|.|......
T Consensus 207 ~~~~~~~~~~~~s~L~i~~~-~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 207 QPALNDSRYSLSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp STTSTTCCEEEEEEEECCST-TTTCTTCEEEEEEEECCBCTT
T ss_pred cccCCCCcEEEEEEEEEChH-HhccCCCEEEEEEEeCCCCCC
Confidence 1222 235788776 343 57889999999877654
No 344
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.57 E-value=4.8e-15 Score=147.06 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=58.7
Q ss_pred CCCCeeeccCcCee--eecCCcEEEEEEECcc---CC-CeeEEEEcCeeccceeEE----Ee----cCeeEEEEecCCCC
Q psy2776 142 AEAPVIQEPLKDSV--AGFQSSVTLECVVSGV---PT-PDIKWYKDDSLIKGRNIT----YE----NNVARFTVVNCSES 207 (803)
Q Consensus 142 ~~~p~i~~~~~~~~--v~~G~~~~L~C~~~g~---p~-p~i~W~~~~~~~~~~~~~----~~----~~~~~L~i~~v~~~ 207 (803)
..+|.+...+.... +.+|+.++|.|.+.|. |. +.|.|+|++..+...... .. .....|.|.+++.+
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 86 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM 86 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence 34555554444444 7899999999999987 33 789999999876532110 00 12357999999999
Q ss_pred cceEEEEEEEcCCcCe
Q psy2776 208 SEGRYTCKATNEAGTA 223 (803)
Q Consensus 208 d~G~Y~C~a~n~~g~~ 223 (803)
|+|.|+|.|.|..+..
T Consensus 87 D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 87 SGKEFKCKVNNKDLPS 102 (218)
T ss_dssp TTCCEEEEEEETTCSS
T ss_pred CCCeEEEEEECCcCCC
Confidence 9999999999987654
No 345
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=144.71 Aligned_cols=178 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred CceeeeccccceeEEEEe-cCCceeeEEeecCeeccccc--eeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 313 PSVTLVPHLGDATFQVEL-SSPDIQVKWLKKGKEIKESA--RHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
+....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+. ++.+..
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~--------------------------------- 71 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN--------------------------------- 71 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEE---------------------------------
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEec---------------------------------
Confidence 444667789999999999 89999999999999887542 222211
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
..+...|.|.++..+|+|.|+|.|.|..|....
T Consensus 72 -----------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~------------------ 104 (215)
T 3mtr_A 72 -----------------------------TPSASYLEVTPDSENDFGNYNCTAVNRIGQESL------------------ 104 (215)
T ss_dssp -----------------------------ETTEEEEEECCCSGGGCEEEEEEEECSSCEEEE------------------
T ss_pred -----------------------------CCCeeEEEEecCChhhCeEEEEEEEECCCceEE------------------
Confidence 123456899999999999999999999998765
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEc----CcCCC--eeEEe
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYF----GFPRP--EISWM 543 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~----g~p~~--~v~W~ 543 (803)
.+.|.+..+|..|... .....+..+.|.|... +.|.. .+.|.
T Consensus 105 ------------------------~~~l~v~~~P~~p~~~--------~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~ 152 (215)
T 3mtr_A 105 ------------------------EFILVQADTPSSPSID--------QVEPYSSTAQVQFDEPEATGGVPILKYKAEWR 152 (215)
T ss_dssp ------------------------EEEEEECCCCCCCEEE--------EEEEETTEEEEEEECCSCCCSSCEEEEEEEEE
T ss_pred ------------------------EEEEEECCCCCCCcce--------EEEEecceEEEEEecCCccCCCceEEEEEEEE
Confidence 5666777777665432 1124467889999732 22333 46788
Q ss_pred eCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 544 KNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 544 ~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+++..........+........|.|.++...|.|.|+|.|.|..|....+..+.|..+|
T Consensus 153 ~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 153 AVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp ETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred ECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 87754221111110011112689999999999999999999999988777776666544
No 346
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=147.41 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=104.9
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eecc-----c--------------eeEE---EecCeeEEE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIK-----G--------------RNIT---YENNVARFT 200 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~-----~--------------~~~~---~~~~~~~L~ 200 (803)
|.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|.. .... . .... ......+|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI 82 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence 44555667788999999999999999888899999832 1110 0 0000 112345799
Q ss_pred EecCCCCcceEEEEEEEcCCcC---eeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecc
Q psy2776 201 VVNCSESSEGRYTCKATNEAGT---AETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~g~---~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (803)
|.+++.+|+|.|.|.+.|..+. ......|.|......+........
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~------------------------------- 131 (259)
T 3omz_A 83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAA------------------------------- 131 (259)
T ss_dssp ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC--------------------------------------------
T ss_pred ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccc-------------------------------
Confidence 9999999999999999998763 223355666654211100000000
Q ss_pred ccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCceeeEEeecC--eecc------
Q psy2776 278 KLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDIQVKWLKKG--KEIK------ 347 (803)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~~i~W~~~g--~~l~------ 347 (803)
.......+...+....+.+|++++|.|.+ + .|.+.+.|+|.+ ..+.
T Consensus 132 ------------------------~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~ 187 (259)
T 3omz_A 132 ------------------------KKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQG 187 (259)
T ss_dssp -----------------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEE
T ss_pred ------------------------cccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEEC
Confidence 00001122233445567789999999998 4 388999999853 1111
Q ss_pred ------ccceeEEE--EcCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 ------ESARHIIT--SRGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 ------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+. ..+....|.|.++..+|+|.|.|.+.+.
T Consensus 188 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 188 SDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp TTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 01233333 1233467999999999999999999853
No 347
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.57 E-value=1.7e-15 Score=152.02 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=70.7
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
++...|+|.+++.+|+|.|.|.+.+..+..... ...|.|
T Consensus 90 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----------------------------------------~~~l~V 128 (233)
T 3bqu_C 90 GTDFVFTIENMLSEDVADYYCLQSDNLPYTFGG-----------------------------------------GTNLEI 128 (233)
T ss_dssp EEEEEEC-----CCCCSEEEEEECSSSSCCBCC-----------------------------------------CCBC--
T ss_pred CCEEEEEECCCCHHHCEEEEEEEecCCceeecC-----------------------------------------CEEEEE
Confidence 445679999999999999999999875432211 223344
Q ss_pred CCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCC-CcEE-EEecCC-----eEEEEEee
Q psy2776 500 QSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDS-KACR-IFIDEE-----TSTIAIYS 570 (803)
Q Consensus 500 ~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~-~~~~-~~~~~~-----~~~L~i~~ 570 (803)
..++..|.+.+... ...+.+|+.++|.|.+.|.+++ .+.|+|+|..+..+ .... .....+ .+.|.|..
T Consensus 129 ~~~~~~p~v~~~~~---~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 205 (233)
T 3bqu_C 129 KRADAAPTVSIFPP---SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 205 (233)
T ss_dssp -CCCBCCEEEEECC---CHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEH
T ss_pred eCCCCCCEEEEeCC---CHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECH
Confidence 43322222222111 1112369999999999986543 79999999887654 1111 111111 25799999
Q ss_pred eccCcCeEEEEEEEcCCCC
Q psy2776 571 VVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~ 589 (803)
+..+|+|.|+|.|.|....
T Consensus 206 ~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 206 DEYERHNSYTCEATHKTST 224 (233)
T ss_dssp HHHHTCCCEEEEEEEC---
T ss_pred HHhCCCCCEEEEEEeCCCC
Confidence 9999999999999997544
No 348
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=126.62 Aligned_cols=99 Identities=23% Similarity=0.420 Sum_probs=85.3
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEee-CceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFD-GENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+..+ .....|.|.++ +.+|+|.|+|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~ 84 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS-TLDDDGNYTIM 84 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSC-CTTTCSCCEEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCC-ChhhCEEEEEE
Confidence 3488888888889999999999999999999999999999999876 456666654 44568999999 79999999999
Q ss_pred EEccCcceeeeEEEEEEeeccC
Q psy2776 748 ATNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~~~~~~ 769 (803)
|.|.+|..+..+.|.|...+..
T Consensus 85 a~N~~g~~~~~~~l~V~~~~~~ 106 (110)
T 2dm2_A 85 AANPQGRISCTGRLMVQAVNSG 106 (110)
T ss_dssp EECTTCCEEECCCEEEECCSCC
T ss_pred EEECCCeEEEEEEEEEECCCCC
Confidence 9999999999999999754433
No 349
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.56 E-value=1.5e-14 Score=125.44 Aligned_cols=94 Identities=31% Similarity=0.322 Sum_probs=87.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 12 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~n 90 (107)
T 3irg_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA-LPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSC-CGGGCEEEEEEEEE
T ss_pred CCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccC-CHHhCEEEEEEEEc
Confidence 48899998888999999999999999999999999999999999888888888888889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
.+|..+..+.|.|..
T Consensus 91 ~~g~~~~~~~l~V~~ 105 (107)
T 3irg_B 91 AAGEAYAAAAVTVLE 105 (107)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEEc
Confidence 999999999998864
No 350
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.56 E-value=1.4e-14 Score=143.98 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=84.2
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++.+|+|.|.|.+.+..+...... ....|.|.
T Consensus 79 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---------------------------------------~~~~l~V~ 119 (220)
T 1pz5_B 79 SSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWG---------------------------------------QGTSVTVS 119 (220)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTSSEEEEC---------------------------------------CCEEEEEC
T ss_pred CeEEEEEccCCHHHCEEEEEEEecCCcccceEC---------------------------------------CCEEEEEc
Confidence 456899999999999999999998753221100 02233333
Q ss_pred C-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeec--CCCcEEE-EecCCeEEEEEeeeccC
Q psy2776 501 S-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEIT--DSKACRI-FIDEETSTIAIYSVVRA 574 (803)
Q Consensus 501 ~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~--~~~~~~~-~~~~~~~~L~i~~v~~~ 574 (803)
. ++..|.+..... ...+.+|+.+.|.|.+.|. |.| .+.|++++..+. ....... ......+.|.|.++..+
T Consensus 120 ~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~ 196 (220)
T 1pz5_B 120 SATTTAPSVYPLVP---GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWP 196 (220)
T ss_dssp SSCCBCCEEEEECC---CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTT
T ss_pred cCCCCCCeEEEccc---ccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcC
Confidence 2 222222222111 1234679999999999997 888 999999886310 0010000 00001467999998886
Q ss_pred cCeEEEEEEEcCCCCeEEEEEE
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
| |.|+|.|.|..|....++.+
T Consensus 197 ~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 197 S-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp T-SCCEEEEEEGGGTEEEEEEC
T ss_pred C-ceEEEEEEECCccEeeeecC
Confidence 6 99999999999976665543
No 351
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.56 E-value=2.5e-14 Score=120.09 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=79.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..+|.|...+.+..+.+|+++.|.|.+.+ |.+.+.|+|||.+|..+.++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v-~~~D~G~Y~C~a~ 80 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNC-QLGMTGEVSFQAA 80 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSC-CGGGCEEEEEEET
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCC-ChhhCEEEEEEEC
Confidence 35899999999999999999999999986 558899999999999999999988888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|. ..++.|.|.
T Consensus 81 n~----~~sa~L~V~ 91 (93)
T 1waa_A 81 NT----KSAANLKVK 91 (93)
T ss_dssp TE----EEEEEEEEE
T ss_pred CC----cEEEEEEEE
Confidence 95 456777775
No 352
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.56 E-value=5.7e-15 Score=150.22 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=109.4
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---e---cC---------CC-cEEEEecCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---I---TD---------SK-ACRIFIDEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i---~~---------~~-~~~~~~~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+++.|.|.+.+.+.+.+.|+|.. .. + .. .. ++.+....... |.|.+++.+|+|.
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~ 88 (253)
T 3to4_D 10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRT 88 (253)
T ss_dssp EEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEE
T ss_pred eEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeE
Confidence 577899999999999988888999999831 11 0 00 01 34333332233 9999999999999
Q ss_pred EEEEEEcCCC---C---eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 579 YTVTATNAAG---S---TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 579 Y~C~a~n~~g---~---~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
|.|.+.+..+ . ......|.|....
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~-------------------------------------------------- 118 (253)
T 3to4_D 89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDL-------------------------------------------------- 118 (253)
T ss_dssp EEEEEECSCCSTTCCEEECCCEEEEEESCS--------------------------------------------------
T ss_pred EEEEEecCCCCcccceEECCCEEEEEecCC--------------------------------------------------
Confidence 9999997654 1 1122244443200
Q ss_pred ccceeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEee-cCCC-ceEEeeCCeeccCCCCeEEE-------
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKA-SPAP-SIVWFRNNKPLLSSPKKREI------- 722 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g-~p~~-~v~W~~~~~~l~~~~~~~~~------- 722 (803)
....+|.+... +....+..|+.++|.|.+.| .|.+ .+.|+++|.++..+......
T Consensus 119 ---------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~ 183 (253)
T 3to4_D 119 ---------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPA 183 (253)
T ss_dssp ---------------TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTT
T ss_pred ---------------CCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceeccccccccccc
Confidence 00124444332 22334456799999999999 5666 89999999998653221100
Q ss_pred -eeCce---EEEEEecCCCCCC-ceeEEEEEEccCcc
Q psy2776 723 -FDGEN---IILELKEADSETD-AGDYKVVATNELGS 754 (803)
Q Consensus 723 -~~~~~---~~L~i~~v~~~~D-~G~Y~C~a~N~~G~ 754 (803)
.++.. +.|.|... ..+| .|.|+|.|.|..-.
T Consensus 184 ~~~g~~~~~s~l~i~~~-~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 184 LNDSRYALSSRLRVSAT-FWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp CTTCCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBC
T ss_pred CCCCCEEEEEEEEECHH-HhccCCCEEEEEEEeCCCC
Confidence 12222 46888877 4456 78999999997544
No 353
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.56 E-value=5.4e-14 Score=143.88 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=115.5
Q ss_pred CeeeccCcCeeeecCCcEEEEEEECccC------CCeeEEEEcC--eecc-------------ceeEEE--ecCeeEEEE
Q psy2776 145 PVIQEPLKDSVAGFQSSVTLECVVSGVP------TPDIKWYKDD--SLIK-------------GRNITY--ENNVARFTV 201 (803)
Q Consensus 145 p~i~~~~~~~~v~~G~~~~L~C~~~g~p------~p~i~W~~~~--~~~~-------------~~~~~~--~~~~~~L~i 201 (803)
+.+...+..+.+.+|++++|.|.+.+.| .+.+.|+|+. ..+. ..++.. .+...+|.|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I 85 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI 85 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence 4455567778899999999999999877 6789999953 2110 122222 334578999
Q ss_pred ecCCCCcceEEEEEEEcCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccc
Q psy2776 202 VNCSESSEGRYTCKATNEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 280 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (803)
.+++.+|+|.|.|.+.|..+.. .....|.|...+...... + .....
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~------~-~~~~~-------------------------- 132 (264)
T 2gjj_A 86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGG------G-SGGGG-------------------------- 132 (264)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC----------------------------------------------
T ss_pred CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccc------c-ccccc--------------------------
Confidence 9999999999999999876532 123566665542100000 0 00000
Q ss_pred eeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCC--ceeeEEeecC--eecc-------c
Q psy2776 281 WLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSP--DIQVKWLKKG--KEIK-------E 348 (803)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p--~~~i~W~~~g--~~l~-------~ 348 (803)
.....+.+. +...+. ..+.+|++++|.|.+ +.+ .+.+.|+|+. ..+. .
T Consensus 133 ------------------~~~~~~~~~-~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~ 192 (264)
T 2gjj_A 133 ------------------SGGGGSEVQ-LQQSGP-EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSS 192 (264)
T ss_dssp ------------------------CCE-EEECCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETT
T ss_pred ------------------cccccCcEE-EeCCCC-EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEecc
Confidence 000001111 112222 256789999999999 665 3799999973 2211 0
Q ss_pred ----------cceeEEEE--cCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 349 ----------SARHIITS--RGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 349 ----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
..++.+.. .+....|.|.++..+|+|.|.|.+.|.
T Consensus 193 ~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 193 YATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp TCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 12333332 334678999999999999999999985
No 354
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.56 E-value=4.8e-15 Score=145.71 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=77.0
Q ss_pred eEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee--ccC
Q psy2776 423 ARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL--QIQ 500 (803)
Q Consensus 423 ~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~ 500 (803)
..|+|.+++.+|+|.|+|.|.|..+...... .+.+ .+.
T Consensus 68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~----------------------------------------~v~~~~~~~ 107 (207)
T 2vol_A 68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEK----------------------------------------TISKTKGRP 107 (207)
T ss_dssp EEEECCHHHHHTTCCEEEEEECTTCSSCEEE----------------------------------------EECCCCCCC
T ss_pred EEEEEehhHcCCCCEEEEEEEccCCCCceEE----------------------------------------EeccCCCCC
Confidence 3599999999999999999999877532211 1111 233
Q ss_pred CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeecc
Q psy2776 501 SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVR 573 (803)
Q Consensus 501 ~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~ 573 (803)
.+|.+ .+..... . ...|+.+.|.|.+.|. |+ +.+.|+|+|..+............+ .+.|.|.....
T Consensus 108 ~~P~v---~~~~~~~--~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 181 (207)
T 2vol_A 108 KAPQV---YTLPPPK--E-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW 181 (207)
T ss_dssp BCCEE---EEECCCT--G-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred cCCeE---EEeCCCH--H-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHc
Confidence 33332 1111111 1 1258999999999985 44 3899999999875432211111222 13466666666
Q ss_pred CcCeEEEEEEEcCCCC
Q psy2776 574 ADTSTYTVTATNAAGS 589 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~ 589 (803)
+|.|.|+|.|.|....
T Consensus 182 ~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 182 EAGNTFTCSVLHEGLH 197 (207)
T ss_dssp SSCCEEEEEEECTTSG
T ss_pred CCCCEEEEEEECCCCC
Confidence 7899999999998654
No 355
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=123.70 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=82.4
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+.+..+.+|+++.|.|.+ .|.|.+.|+|||.+|..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 82 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDA 82 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSC-CGGGCSEEEEEESS
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCC-ChhhCEEEEEEEcC
Confidence 47889999999999999999999999 8999999999999999999999998888889999999 79999999999999
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
. ..+.++.|.|..
T Consensus 83 ~--~~~~~a~L~V~~ 95 (100)
T 2yuz_A 83 Y--NVTLPAKVHVIS 95 (100)
T ss_dssp S--CCCEEEEEEEEC
T ss_pred C--CeeEEEEEEEeC
Confidence 8 567788888864
No 356
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=122.89 Aligned_cols=94 Identities=28% Similarity=0.453 Sum_probs=82.7
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCC-eEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPK-KREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+..+.+ +.+..++...+|.|.++ +.+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~ 82 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA-ERGDAGFYTCKAV 82 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSC-CGGGCEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccC-CcCCCEEEEEEEE
Confidence 378888888889999999999999999999999999999999877654 44444666778999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|.+|..+.++.|.|..
T Consensus 83 N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 83 NEYGARQCEARLEVRG 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCceeEEEEEEEEC
Confidence 9999999999998864
No 357
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-14 Score=125.77 Aligned_cols=97 Identities=31% Similarity=0.491 Sum_probs=85.0
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeC-ceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDG-ENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..+|.|+..+....+.+|+++.|.|.+.|.|.|.+.|++++..+.. ..++.+..++ ...+|.|.++ +.+|+|.|+|.
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~ 91 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV-NKKDAGWYTVS 91 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEE-CGGGCEEEEEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCC-CcccCEEEEEE
Confidence 3489999999999999999999999999999999999999999875 4667666554 3568999999 79999999999
Q ss_pred EEccCcceeeeEEEEEEeec
Q psy2776 748 ATNELGSATHGARVTVDVEK 767 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~~~~ 767 (803)
|.|..|..+..+.|.|..++
T Consensus 92 a~N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 92 AVNEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp EEETTEEEEEEEEEEEECCS
T ss_pred EEcCCCeEEEEEEEEEeCCC
Confidence 99999999999999987544
No 358
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.55 E-value=3.1e-14 Score=121.38 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=76.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..|.... ++.+...++.++|.|.++..+|+|.|+|.|+|..|..+.+
T Consensus 13 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 92 (100)
T 3knb_A 13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT 92 (100)
T ss_dssp SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEE
Confidence 46788999999999999999999999999999997653 5677777778899999999999999999999999999999
Q ss_pred EEEEEee
Q psy2776 594 LSLQVLG 600 (803)
Q Consensus 594 ~~l~V~~ 600 (803)
+.|.|..
T Consensus 93 ~~l~V~~ 99 (100)
T 3knb_A 93 VNIHIRS 99 (100)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9999864
No 359
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.55 E-value=3.3e-13 Score=130.85 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=60.3
Q ss_pred cCcCeeeecCCcEEEEEEECc-cC---CCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCcCeee
Q psy2776 150 PLKDSVAGFQSSVTLECVVSG-VP---TPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAET 225 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g-~p---~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 225 (803)
.|....+..|+.++|.|.+.| .| ...+.|+|++..+.. ....|.|..+...|+|.|+|.+.+..|....
T Consensus 8 ~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~t 80 (304)
T 3shs_A 8 QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------NTATLTVADATSENAGSYKVTVQDTDTMTSV 80 (304)
T ss_dssp EESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-------CSSEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred CCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-------CcceEEeeeccccCCeEEEEEEEECCCCeee
Confidence 456667789999999999874 56 347999999977543 3457999999999999999999998887665
Q ss_pred EEEEEEee
Q psy2776 226 SCTLLVQG 233 (803)
Q Consensus 226 s~~l~V~~ 233 (803)
+..+.|..
T Consensus 81 Ss~VtVT~ 88 (304)
T 3shs_A 81 ESEVFLME 88 (304)
T ss_dssp ECCCEEEC
T ss_pred eeeEEEec
Confidence 55555444
No 360
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.55 E-value=1e-13 Score=137.86 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=85.0
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCcee---e-eeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceee
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGT---A-ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTN 496 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (803)
+...|+|.+++.+|+|.|.|.+.+..|. . ... ....
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~----------------------------------------~~~~ 116 (223)
T 1dee_B 77 NTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWG----------------------------------------QGTL 116 (223)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEEC----------------------------------------CCEE
T ss_pred CEEEEEECCCCHHHCEEEEEEEeccccCcccceeec----------------------------------------CcEE
Confidence 4578999999999999999999986531 1 110 0234
Q ss_pred eccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEee-CCeeecCCCcEEEEecCC----eEEEEE
Q psy2776 497 LQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMK-NGAEITDSKACRIFIDEE----TSTIAI 568 (803)
Q Consensus 497 l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~-~g~~i~~~~~~~~~~~~~----~~~L~i 568 (803)
|.|.. ++..|.+..... ...+.+|+.+.|.|.+.|. |.+ .+.|++ +|..+............+ .+.|.|
T Consensus 117 L~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i 193 (223)
T 1dee_B 117 VTVSSGSASAPTLFPLVS---CENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLL 193 (223)
T ss_dssp EEECSSCCBCCEEEEEEC---TTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEE
T ss_pred EEEccCCCCCCEEEEecC---CcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEE
Confidence 44442 223333322111 1224679999999999987 766 999999 888775410000000111 356888
Q ss_pred eeecc--CcCeEEEEEEEcCCCCeEEEE
Q psy2776 569 YSVVR--ADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 569 ~~v~~--~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
..... +|.|.|+|.|.|..+......
T Consensus 194 ~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 194 PSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp ECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred cHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 77776 789999999999988765543
No 361
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.55 E-value=1.6e-14 Score=121.61 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=77.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCC--eeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN--KPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~--~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+.... .+........|.|.++ +.+|+|.|+|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~ 78 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSA-KRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTB-CGGGCEEEEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCC-ChhcCEEEEEEEE
Confidence 678877778889999999999999999999999999999 8876553 3344466678999999 7999999999999
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
|.+|.++..+.|.|
T Consensus 79 N~~G~~~~~~~l~V 92 (93)
T 1wit_A 79 NELGEDEAIFEVIV 92 (93)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEE
Confidence 99999999888887
No 362
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.55 E-value=6.6e-15 Score=147.61 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=102.7
Q ss_pred EeecceeEEEEEEcCcC----CCeeEEeeCCeeecCCCcEEEEec-CC----eEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGFP----RPEISWMKNGAEITDSKACRIFID-EE----TSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~p----~~~v~W~~~g~~i~~~~~~~~~~~-~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+..|+.+.|.|.+.|.+ ...|+|+|+|..+........... ++ .+.|.|.....+|.|.|+|.|.|..+..
T Consensus 36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~ 115 (240)
T 4acp_A 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 115 (240)
T ss_dssp HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence 44699999999999975 247999999998865321110011 11 2578888887888999999999987643
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.... ...
T Consensus 116 ~~~~~i~~~~-------------------------------------------------------------------~~~ 128 (240)
T 4acp_A 116 PIEKTISKAK-------------------------------------------------------------------GQP 128 (240)
T ss_dssp CEEEEECCCC-------------------------------------------------------------------SCC
T ss_pred cccccccccC-------------------------------------------------------------------CCC
Confidence 2222221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCC--eEEEeeCc---eEEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPK--KREIFDGE---NIILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|+ |.+ .+.|+++|.++..... .....++. ...|.|... ..+|.|.
T Consensus 129 ~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~-~~~~~~~ 207 (240)
T 4acp_A 129 REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKS-RWQQGNV 207 (240)
T ss_dssp BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH-HHHTTCC
T ss_pred CCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChH-HhCCCCE
Confidence 25555544443333348999999999995 554 7999999998753211 11112232 244666654 2357899
Q ss_pred EEEEEEccCc
Q psy2776 744 YKVVATNELG 753 (803)
Q Consensus 744 Y~C~a~N~~G 753 (803)
|+|.|.|..-
T Consensus 208 ytC~V~h~~l 217 (240)
T 4acp_A 208 FSCSVMHEAL 217 (240)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEEECCC
Confidence 9999999764
No 363
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=126.48 Aligned_cols=101 Identities=25% Similarity=0.418 Sum_probs=87.5
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..+... ....+|.|.++ +.+|+|.|+|.|
T Consensus 7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a 85 (110)
T 2dm3_A 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPV-TSRDAGIYTCIA 85 (110)
T ss_dssp CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSC-CGGGCSBBCEEE
T ss_pred CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeC-CcccCEEEEEEE
Confidence 3489999999999999999999999999999999999999999887766554443 44578999999 789999999999
Q ss_pred EccCcceeeeEEEEEEeeccCCC
Q psy2776 749 TNELGSATHGARVTVDVEKVGRP 771 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~~~~~pp 771 (803)
.|..|..+..+.|.|..++..|+
T Consensus 86 ~n~~g~~~~~~~l~V~~~p~~P~ 108 (110)
T 2dm3_A 86 TNRAGQNSFSLELVVAAKESGPS 108 (110)
T ss_dssp ECSSCEEEECCEEEEECCCCSSS
T ss_pred ECCCCEEEEEEEEEEeCCCCCCC
Confidence 99999999999999976655544
No 364
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.54 E-value=3.3e-14 Score=145.94 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--Ceecc-----------------ceeEEEe---cCeeEEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--DSLIK-----------------GRNITYE---NNVARFTV 201 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--~~~~~-----------------~~~~~~~---~~~~~L~i 201 (803)
.+.+...+..+.+.+|++++|.|.+. .+.+.+.|+|. +.... ..++... .+..+|.|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34455566778899999999999986 57788999992 21110 0222322 23578999
Q ss_pred ecCCCCcceEEEEEEEcCC--cCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccc
Q psy2776 202 VNCSESSEGRYTCKATNEA--GTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 279 (803)
Q Consensus 202 ~~v~~~d~G~Y~C~a~n~~--g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (803)
.+++.+|+|.|+|.+.|.. ........|.|.........
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~--------------------------------------- 145 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFP--------------------------------------- 145 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBC---------------------------------------
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccC---------------------------------------
Confidence 9999999999999999842 22223445666542100000
Q ss_pred ceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEEEE
Q psy2776 280 KWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHIITS 356 (803)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~~~ 356 (803)
+.+....+....+..|+.++|.|.+ + .|.+ .+.|+++|+++..+.....
T Consensus 146 --------------------------P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~-- 197 (268)
T 3pl6_D 146 --------------------------PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDP-- 197 (268)
T ss_dssp --------------------------CEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECS--
T ss_pred --------------------------CceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEecc--
Confidence 0011111222334458999999999 5 4433 8999999998875422100
Q ss_pred cCceeEEEEeecCCCCCccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCC-c
Q psy2776 357 RGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESS-E 435 (803)
Q Consensus 357 ~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~ 435 (803)
........++.|.|.+.. .|+|.....+| .
T Consensus 198 ------~~~~~~~~~~~~~~~~~s-------------------------------------------~l~i~~~~~~d~~ 228 (268)
T 3pl6_D 198 ------QPLKEQPALNDSRYSLSS-------------------------------------------RLRVSATFWQNPR 228 (268)
T ss_dssp ------SCEESSTTCTTCCEEEEE-------------------------------------------EEEEEHHHHSCTT
T ss_pred ------ccccccccCCCCcEEEEE-------------------------------------------EEEEcHHHhccCC
Confidence 011122333445554432 37888888787 9
Q ss_pred eeEEEEeeCCceeee
Q psy2776 436 GRYTCKATNEAGTAE 450 (803)
Q Consensus 436 G~Y~C~a~~~~g~~~ 450 (803)
|.|+|.|.|......
T Consensus 229 g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 229 NHFRCQVQFYGLSEN 243 (268)
T ss_dssp CEEEEEEEECCBCTT
T ss_pred CEEEEEEEcCCCCCC
Confidence 999999999765443
No 365
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.54 E-value=6e-14 Score=141.87 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=58.9
Q ss_pred eeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEc--------------Ceeccc-----eeEEEe---cCeeEEEEec
Q psy2776 146 VIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKD--------------DSLIKG-----RNITYE---NNVARFTVVN 203 (803)
Q Consensus 146 ~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~--------------~~~~~~-----~~~~~~---~~~~~L~i~~ 203 (803)
.+...+..+.+.+|++++|.| ..+.+.+.+.|+|. +..... .++... .+..+|.|.+
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 82 (245)
T 4ei6_B 4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQP 82 (245)
T ss_dssp CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECS
T ss_pred ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECC
Confidence 345556778899999999999 66778889999982 111100 222222 2356899999
Q ss_pred CCCCcceEEEEEEEcCC----cCeeeEEEEEEee
Q psy2776 204 CSESSEGRYTCKATNEA----GTAETSCTLLVQG 233 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~----g~~~~s~~l~V~~ 233 (803)
++.+|+|.|.|.+.+.. ........|.|..
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~ 116 (245)
T 4ei6_B 83 TALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE 116 (245)
T ss_dssp CCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred CCHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence 99999999999999632 1222334566653
No 366
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.54 E-value=1.4e-14 Score=125.18 Aligned_cols=95 Identities=21% Similarity=0.374 Sum_probs=87.3
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
...+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+...+...+|.|.++ +.+|+|.|+|.|
T Consensus 11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 89 (106)
T 1nct_A 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV-QASDEGNYSVVV 89 (106)
T ss_dssp SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCC-CSSCCSEEEECC
T ss_pred CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcC-CchhCEEEEEEE
Confidence 3458899999999999999999999999999999999999999998888888887777889999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|..|..+.++.|.|.
T Consensus 90 ~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 90 ENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp BCSSCBCCEEEEEEEC
T ss_pred EeCCCeEEEEEEEEEE
Confidence 9999999998888873
No 367
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.54 E-value=4.6e-14 Score=142.04 Aligned_cols=172 Identities=12% Similarity=0.117 Sum_probs=110.6
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec------------CCCcEEEEe-cCCeEEEEEeeeccCcCe
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT------------DSKACRIFI-DEETSTIAIYSVVRADTS 577 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~------------~~~~~~~~~-~~~~~~L~i~~v~~~dsG 577 (803)
....+.+|+++.|.|.+. .+.+.+.|+|++ .. +. ...++.+.. ......|.|.+++.+|+|
T Consensus 7 ~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G 85 (238)
T 1bec_A 7 RNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTS 85 (238)
T ss_dssp SEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCE
T ss_pred CeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCE
Confidence 357789999999999995 467899999864 11 10 123444432 234579999999999999
Q ss_pred EEEEEEEcCCCC-----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCC
Q psy2776 578 TYTVTATNAAGS-----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPE 652 (803)
Q Consensus 578 ~Y~C~a~n~~g~-----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~ 652 (803)
.|.|.+.|..+. ......|.|....
T Consensus 86 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 115 (238)
T 1bec_A 86 VYFCASGGGRGSYAEQFFGPGTRLTVLEDL-------------------------------------------------- 115 (238)
T ss_dssp EEEEEEESCTTCGGGCEECCCEEEEEESCG--------------------------------------------------
T ss_pred EEEEEEecCCCCccccccCCCEEEEEeccC--------------------------------------------------
Confidence 999999987421 1122345553310
Q ss_pred ccceeeeeeecccCCCCCCCCeeEe-ccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCe----EEEeeC
Q psy2776 653 ATTELVALATHATLGSPGQAPLFIE-RFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKK----REIFDG 725 (803)
Q Consensus 653 s~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~----~~~~~~ 725 (803)
....+|.+.. .+....+.+|+.++|.|.+.|. |.+ .+.|+++|.++..+.+. ....++
T Consensus 116 ---------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g 180 (238)
T 1bec_A 116 ---------------RQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNY 180 (238)
T ss_dssp ---------------GGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETT
T ss_pred ---------------CCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCC
Confidence 0011454443 3333456689999999999986 755 89999999998655321 112223
Q ss_pred ce---EEEEEecCCCCC-CceeEEEEEEccCcc
Q psy2776 726 EN---IILELKEADSET-DAGDYKVVATNELGS 754 (803)
Q Consensus 726 ~~---~~L~i~~v~~~~-D~G~Y~C~a~N~~G~ 754 (803)
.. ..|.|... ... +.|.|+|.|.|....
T Consensus 181 ~~~~~s~L~i~~~-~~~d~~~~ytC~v~~~~l~ 212 (238)
T 1bec_A 181 SYCLSSRLRVSAT-FWHNPRNHFRCQVQFHGLS 212 (238)
T ss_dssp EEEEEEEECCCHH-HHTCTTCEEEEEEEECCCC
T ss_pred CEEEEEEEEEcHH-HhccCCCeEEEEEEcCCCC
Confidence 21 23555544 222 467899999997543
No 368
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.54 E-value=3.4e-14 Score=121.37 Aligned_cols=93 Identities=14% Similarity=0.266 Sum_probs=83.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeecc--CCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLL--SSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+. ...++.+..++...+|.|.++ +.+|+|.|+|.|
T Consensus 4 ~pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a 82 (100)
T 3irg_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV-QKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSC-CGGGCEEEEEEE
T ss_pred CCCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeec-CcccCEEEEEEE
Confidence 37888888888899999999999999999999999999999986 345777777777789999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.|..|..+..+.|.|+
T Consensus 83 ~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEEE
Confidence 9999999999988885
No 369
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.53 E-value=9.8e-14 Score=138.61 Aligned_cols=170 Identities=12% Similarity=0.175 Sum_probs=108.2
Q ss_pred CcCeeeecCCcEEEEEEECccCC----CeeEEEEcC--eecc-----------------ceeEEEe----cCeeEEEEec
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVPT----PDIKWYKDD--SLIK-----------------GRNITYE----NNVARFTVVN 203 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p~----p~i~W~~~~--~~~~-----------------~~~~~~~----~~~~~L~i~~ 203 (803)
+....+.+|++++|.|.+.+.|. +.+.|+|.. ..+. ..++... .+..+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 34567889999999999988764 789999853 2110 1233322 1347899999
Q ss_pred CCCCcceEEEEEEEcCCcC-----e--e--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEe
Q psy2776 204 CSESSEGRYTCKATNEAGT-----A--E--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVK 274 (803)
Q Consensus 204 v~~~d~G~Y~C~a~n~~g~-----~--~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (803)
++.+|+|.|.|.+.|..|. . . ..+.|.|...+. .
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~--~----------------------------------- 129 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT--T----------------------------------- 129 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC--B-----------------------------------
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC--C-----------------------------------
Confidence 9999999999999987651 1 1 225566653210 0
Q ss_pred eccccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccce
Q psy2776 275 SVSKLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESAR 351 (803)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~ 351 (803)
.+.+....+.. .+.+|+.+.|.|.+ + .|.+ .+.|++++..+.....
T Consensus 130 ------------------------------~P~i~~~~~~~-~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~ 178 (228)
T 3bae_H 130 ------------------------------APSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF 178 (228)
T ss_dssp ------------------------------CCEEEEECC------CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEE
T ss_pred ------------------------------CCEEEEecccc-cccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEc
Confidence 00011111111 13469999999999 5 4776 9999999876532111
Q ss_pred eEEEEcCc---eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 352 HIITSRGT---QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 352 ~~~~~~~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
..+...+. ...|.|.....+| |.|+|.+.|..+...+
T Consensus 179 ~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~ 218 (228)
T 3bae_H 179 PAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV 218 (228)
T ss_dssp EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred CceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence 11222232 3458888888866 9999999998876553
No 370
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.53 E-value=1e-13 Score=142.32 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=52.7
Q ss_pred ceEEeecceeEEEEEEcCcCC--CeeEEeeC--Ceeec-------------------CCCcEEEEec--CCeEEEEEeee
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR--PEISWMKN--GAEIT-------------------DSKACRIFID--EETSTIAIYSV 571 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~--g~~i~-------------------~~~~~~~~~~--~~~~~L~i~~v 571 (803)
...+.+|++++|.|.+.+.++ +.+.|+|+ +..+. ...++.+..+ .....|.|.++
T Consensus 160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 239 (268)
T 1x9q_A 160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNL 239 (268)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 467889999999999998764 78999985 22210 1234554432 23578999999
Q ss_pred ccCcCeEEEEEEEcC
Q psy2776 572 VRADTSTYTVTATNA 586 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~ 586 (803)
..+|+|.|.|.|.|.
T Consensus 240 ~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 240 RVEDTGIYYCTGASY 254 (268)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred CHHHCEEEEEEEccC
Confidence 999999999999874
No 371
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.6e-14 Score=123.37 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=80.5
Q ss_pred CCCCeeEe---ccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 670 GQAPLFIE---RFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 670 ~~~p~~~~---~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
..+|.|.. ......+.+|+.+.|.|.+.|.|.|.+.|+++|..+. ..++.+...+....|.|.++ +.+|+|.|+|
T Consensus 19 ~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C 96 (118)
T 2e7c_A 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQA-ARSDSGEYEL 96 (118)
T ss_dssp SEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSC-CTTTCEEEEE
T ss_pred ccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCC-ChhcCEEEEE
Confidence 34677754 2456789999999999999999999999999999986 56677777777788999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|.|.+|..+..+.|.|.
T Consensus 97 ~a~N~~G~~~~~~~l~V~ 114 (118)
T 2e7c_A 97 SVQIENMKDTATIRIRVV 114 (118)
T ss_dssp EEECSSCEECCEEEEEEE
T ss_pred EEEeCCCeEEEEEEEEEE
Confidence 999999999999988885
No 372
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.53 E-value=1.9e-13 Score=136.94 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=83.7
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCce--eeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAG--TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
+...|+|.+++.+|+|.|.|.+.+..+ ...... .....|.
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~--------------------------------------~~~~~L~ 117 (232)
T 1dn0_B 76 NQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYW--------------------------------------GQGTLVT 117 (232)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEE--------------------------------------CCCEEEE
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCcCCchhhhc--------------------------------------ccceEEE
Confidence 456899999999999999999984221 100000 0023444
Q ss_pred cCC-CCCCccceeeeccccceEEeec-ceeEEEEEEcCc-CCC-eeEEee-CCeeecCCCcE-EEEecC---CeEEEEEe
Q psy2776 499 IQS-PPQQPAIKLVDSNLKSQRLSVK-SQWKVEVKYFGF-PRP-EISWMK-NGAEITDSKAC-RIFIDE---ETSTIAIY 569 (803)
Q Consensus 499 v~~-~p~~~~~~~~~~~~~~~~v~~g-~~v~l~C~~~g~-p~~-~v~W~~-~g~~i~~~~~~-~~~~~~---~~~~L~i~ 569 (803)
|.. ++..|.+..... ...+..| +.+.|.|.+.+. |.+ .+.|++ +|..+...... .....+ ..+.|.|.
T Consensus 118 V~~~~~~~P~v~~~~p---~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~ 194 (232)
T 1dn0_B 118 VSSGSASAPTLFPLVS---CENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLP 194 (232)
T ss_dssp ECSSCCBCCEEEEEEC---C------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEEC
T ss_pred EccCCCCCCceEEecc---ccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEc
Confidence 444 233333322111 1224578 999999999986 776 999999 99877541000 000110 13578888
Q ss_pred eecc--CcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 570 SVVR--ADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 570 ~v~~--~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
+... +|.|.|+|.|.|..+.......+.|..
T Consensus 195 ~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 195 SKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp TTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred HHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence 8876 889999999999999877766665543
No 373
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.53 E-value=6.8e-14 Score=140.20 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=109.3
Q ss_pred ceEEeecceeEEEEEEcCcC--CCee--EEeeCC--e---ee-----cC-----------CCcEEEEec--CCeEEEEEe
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEI--SWMKNG--A---EI-----TD-----------SKACRIFID--EETSTIAIY 569 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v--~W~~~g--~---~i-----~~-----------~~~~~~~~~--~~~~~L~i~ 569 (803)
...+.+|++++|.|.+.+.+ ...+ .|+|.. . .+ .. ..++.+..+ .+...|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 88 (232)
T 3qhz_H 9 PALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMT 88 (232)
T ss_dssp CSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEEC
T ss_pred CEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEEC
Confidence 35688999999999998643 2445 999742 1 11 00 135554432 345789999
Q ss_pred eeccCcCeEEEEEEEcCCC--------CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEE
Q psy2776 570 SVVRADTSTYTVTATNAAG--------STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQV 641 (803)
Q Consensus 570 ~v~~~dsG~Y~C~a~n~~g--------~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (803)
+++.+|+|.|.|.+.+..+ .......|.|..
T Consensus 89 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~----------------------------------------- 127 (232)
T 3qhz_H 89 NMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS----------------------------------------- 127 (232)
T ss_dssp SCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS-----------------------------------------
T ss_pred cCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec-----------------------------------------
Confidence 9999999999999997631 112223344421
Q ss_pred EEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCC--ceEEeeCCeeccCCCCe
Q psy2776 642 FAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP--SIVWFRNNKPLLSSPKK 719 (803)
Q Consensus 642 ~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~--~v~W~~~~~~l~~~~~~ 719 (803)
....+|.+........+..|+.++|.|.+.|.+++ .+.|+++|..+......
T Consensus 128 --------------------------~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~ 181 (232)
T 3qhz_H 128 --------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP 181 (232)
T ss_dssp --------------------------SCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC
T ss_pred --------------------------CCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeecc
Confidence 11225656544444456679999999999986543 57799998744211110
Q ss_pred EEEe-eCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 720 REIF-DGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 720 ~~~~-~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.... ++. .+.|.|... ...| |.|+|.|.|..+.......|.+
T Consensus 182 ~~~~~~g~~~~~s~L~i~~~-~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 182 AVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CEECTTSCEEEEEEEEEEGG-GGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ceeCCCCCEEEEEEEEEchh-hcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 0111 121 246889888 5678 9999999999988776665543
No 374
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.53 E-value=7.7e-14 Score=140.46 Aligned_cols=178 Identities=14% Similarity=0.139 Sum_probs=113.5
Q ss_pred ceEEeecceeEEEEEEcCcCC----CeeEEeeCC--e---ee---c----------------CCCcEEEEec--CCeEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR----PEISWMKNG--A---EI---T----------------DSKACRIFID--EETSTI 566 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~----~~v~W~~~g--~---~i---~----------------~~~~~~~~~~--~~~~~L 566 (803)
...+.+|++++|.|.+.+.+. ..+.|+|.. . .+ . ...++.+..+ .....|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 88 (239)
T 3tv3_H 9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL 88 (239)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence 467889999999999987663 489999842 1 11 1 0134444332 345789
Q ss_pred EEeeeccCcCeEEEEEEEcCCCC-------------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEccccc
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGS-------------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRD 633 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~-------------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 633 (803)
.|.+++.+|+|.|.|.+.+..+. ......|.|..
T Consensus 89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~--------------------------------- 135 (239)
T 3tv3_H 89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS--------------------------------- 135 (239)
T ss_dssp EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC---------------------------------
T ss_pred EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc---------------------------------
Confidence 99999999999999999875321 01112233321
Q ss_pred CceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCe
Q psy2776 634 KSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNK 711 (803)
Q Consensus 634 ~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~ 711 (803)
....+|.+........+..|+.++|.|.+.|. |.+ .+.|+++|.
T Consensus 136 ----------------------------------~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~ 181 (239)
T 3tv3_H 136 ----------------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL 181 (239)
T ss_dssp ----------------------------------CCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ----------------------------------CCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCc
Confidence 11225666544444455679999999999985 544 488999987
Q ss_pred eccCCCCeEEEe-eCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 712 PLLSSPKKREIF-DGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 712 ~l~~~~~~~~~~-~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.+.......... ++. .+.|.|... ..+| |.|+|.|.|..+.......|.+
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 182 TSGVHTFPAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp CTTEEECCCEECTTSCEEEEEEEEEEGG-GTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred cCceEecCceECCCCCEEEEEEEEEchh-hcCC-CEEEEEEEECCCCceEEEEecc
Confidence 542111101111 121 246889888 5678 9999999999988776665554
No 375
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=121.41 Aligned_cols=92 Identities=29% Similarity=0.414 Sum_probs=80.4
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEE-eeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+....+..+. .......|.|.++ +.+|+|.|+|.|.|
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n 83 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVV-RASDAGAYACVAKN 83 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSC-CGGGCEEEEEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCC-CcccCEEEEEEEEc
Confidence 677887888889999999999999999999999999999999877654333 3455578999999 78999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
..|..+.++.|.|.
T Consensus 84 ~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 84 RAGEATFTVQLDVL 97 (100)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEE
Confidence 99999999999885
No 376
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.52 E-value=8.7e-14 Score=140.20 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=115.7
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--------------eecc----ceeEEEe---cCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--------------SLIK----GRNITYE---NNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--------------~~~~----~~~~~~~---~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|+++.|.|.+.+ +.+.+.|+|.. .... ..++... ....+|.|.+++
T Consensus 5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~ 83 (240)
T 3q5y_A 5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE 83 (240)
T ss_dssp CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence 444566788999999999999976 77899999822 1110 0122222 245689999999
Q ss_pred CCcceEEEEEEEcCCc---CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 206 ESSEGRYTCKATNEAG---TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g---~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
.+|+|.|+|.+.+..+ .......|.|........
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~------------------------------------------- 120 (240)
T 3q5y_A 84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVT------------------------------------------- 120 (240)
T ss_dssp GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCB-------------------------------------------
T ss_pred hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCC-------------------------------------------
Confidence 9999999999984322 122234566653210000
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeecccccee----EEE
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARH----IIT 355 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~----~~~ 355 (803)
.+.+....+....+..|+.+.|.|.+ + .|.+ .+.|+++|.++...... ...
T Consensus 121 ----------------------~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~ 178 (240)
T 3q5y_A 121 ----------------------PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKE 178 (240)
T ss_dssp ----------------------CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEE
T ss_pred ----------------------CCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeC
Confidence 00111111222234458899999999 5 5655 89999999998764332 233
Q ss_pred EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeeee
Q psy2776 356 SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 356 ~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~~ 392 (803)
.++.. ..|.|.....+| .|.|+|.+.|........|.
T Consensus 179 ~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~~~~ 219 (240)
T 3q5y_A 179 SNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 219 (240)
T ss_dssp ETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTSCCC
T ss_pred CCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCccccC
Confidence 34443 348899998888 67999999998766555663
No 377
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.52 E-value=5.2e-13 Score=151.14 Aligned_cols=91 Identities=30% Similarity=0.473 Sum_probs=78.8
Q ss_pred EEEecCCCCCCCceEEEecCCeEEEEeeCCCCCCCCCeEEEEEEeecCCCceeEEEeeee-eeEEEEeccccCCeEEEEE
Q psy2776 38 VTLLSAPGAPDTPEIVGRSDSSVTLHWRPPQDDGHSPVTGYVLESHDKDEFMVWNKIETT-STTYEVTKLTTKHEYMFRV 116 (803)
Q Consensus 38 l~V~~~p~~p~~~~~~~~~~~~v~l~c~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~c 116 (803)
|..+.+|+||..|.+.....++++|+|.+|..+|+++|++|.+|.++.+.. .|.++... ...+++.+|.++..|.||+
T Consensus 4 v~~~~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~-~W~~v~~~~~t~~~V~~L~~g~~Y~FRV 82 (573)
T 3uto_A 4 VADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGG-SWSPCAKSRYTYTTIEGLRAGKQYEFRI 82 (573)
T ss_dssp ----CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSC-CCEEEEEESSSEEEECCCCTTCEEEEEE
T ss_pred cccCCCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCC-ceEEeccccCCEEEeCCCCCCCcEeEEE
Confidence 445567889999999999999999999999999999999999999988776 89988764 6789999999999999999
Q ss_pred EEEccCccCCCcc
Q psy2776 117 AAVNAIGTGPASH 129 (803)
Q Consensus 117 ~a~~~~g~~~~s~ 129 (803)
.|.|.+|.+.++.
T Consensus 83 ~A~N~~G~s~PS~ 95 (573)
T 3uto_A 83 IAENKHGQSKPCE 95 (573)
T ss_dssp EEEETTEECCCCC
T ss_pred EEEcCceEcCCcC
Confidence 9999999876654
No 378
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=116.68 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=71.9
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+.++.+.+|+++.|.|.+.| |.|.+.|+|||.+|..+.++.+..++....|.|.++ +.+|+|.|+|.|.| ++.+
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~n----~~~~ 76 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGA-RSGDAGEYLCDAPQ----DSRI 76 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSC-SSTTCEEEEEECTT----TCEE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCC-CCcccEEEEEEECC----EEEE
Confidence 34678999999999999976 999999999999999999999999999899999999 79999999999866 5667
Q ss_pred EEEEEEe
Q psy2776 759 ARVTVDV 765 (803)
Q Consensus 759 ~~l~V~~ 765 (803)
+.|.|+.
T Consensus 77 a~l~V~e 83 (84)
T 2lu7_A 77 FLVSVEE 83 (84)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 7788853
No 379
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.52 E-value=6.1e-14 Score=161.28 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=122.3
Q ss_pred cCeeeecCCcEEEEEEE-CccCCCeeEEEEcCeecc-------------ceeEEEecCeeEEEEecCCCCcceEEEEEEE
Q psy2776 152 KDSVAGFQSSVTLECVV-SGVPTPDIKWYKDDSLIK-------------GRNITYENNVARFTVVNCSESSEGRYTCKAT 217 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~-~g~p~p~i~W~~~~~~~~-------------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 217 (803)
+...+.+|++++|.|.+ .+.|.+.+.|+|++..+. ..+..... ..+|.|.+++.+|+|.|+|.+.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP-NGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECT-TSCEEESSCCGGGCEEEEEEEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcC-CceEEEeccccccCeEEEEEEE
Confidence 34677899999999999 788999999999875221 11222222 2479999999999999999999
Q ss_pred cCCcCe-eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 218 NEAGTA-ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 218 n~~g~~-~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
|..+.. ...+.|.|...+..+.
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~--------------------------------------------------------- 475 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPE--------------------------------------------------------- 475 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCE---------------------------------------------------------
T ss_pred cCCCceeEEEEEEEEEcCCCCCE---------------------------------------------------------
Confidence 999887 6678888876532110
Q ss_pred eeccCCCccccccccCCceeeeccccc-eeEEEEe-c-CCceeeEEeecCeeccccceeEEEEcCceeEEEEeecCC-CC
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGD-ATFQVEL-S-SPDIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQ-DD 372 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~-~-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~-~d 372 (803)
+. .+... +.+++. +.|.|.+ + .|.+.+.|++||+++...... .+....... .+
T Consensus 476 -----------i~--~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~---------~~~~~~~~~~~~ 532 (581)
T 3o3u_N 476 -----------IV--DSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKG---------VSVKEQTRRHPE 532 (581)
T ss_dssp -----------EE--SCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTT---------EEEEEEEEECTT
T ss_pred -----------EE--cCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCe---------EEEEeeeEEcCC
Confidence 00 00111 223444 4679999 5 699999999999998753221 111222222 38
Q ss_pred CccEEEEEeccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEecc-CCCceeEEEEeeCCceeee
Q psy2776 373 ETDIGVLALNVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCS-ESSEGRYTCKATNEAGTAE 450 (803)
Q Consensus 373 ~g~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~~~~g~~~ 450 (803)
+|.|+|... |+|.+++ .++.|.|+|.|.|..+...
T Consensus 533 ~g~y~~~s~-------------------------------------------L~i~~~~~~d~~~~y~C~~~n~~~~~~ 568 (581)
T 3o3u_N 533 TGLFTLQSE-------------------------------------------LMVTPARGGDPRPTFSCSFSPGLPRHR 568 (581)
T ss_dssp TCCEEEEEE-------------------------------------------EEECCCTTSCSCCCEEEEEECSSCSSC
T ss_pred CceEEEEEE-------------------------------------------EEEEeccccCCCceEEEEEeccCCCCC
Confidence 899998865 8899888 5668999999999875443
No 380
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.52 E-value=1.4e-13 Score=143.01 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=112.0
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcCe--ecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDDS--LIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~~--~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+....+.+|++++|.|.+.+.| .+.+.|+|+.. .+. ..++... .+..+|.|.++
T Consensus 29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 108 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL 108 (291)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence 4567889999999999998766 57899999531 110 1122221 23578999999
Q ss_pred CCCcceEEEEEEEcCC-cCee----eEEEEEEeee-ecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccc
Q psy2776 205 SESSEGRYTCKATNEA-GTAE----TSCTLLVQGK-EIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSK 278 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~-g~~~----~s~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (803)
+.+|+|.|.|.+.|.. |... ....|.|... .... +. ..
T Consensus 109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~---------~~-~~-------------------------- 152 (291)
T 2gki_A 109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGS---------GG-GG-------------------------- 152 (291)
T ss_dssp CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------------------------------------
T ss_pred CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCcccc---------cc-cc--------------------------
Confidence 9999999999999875 2111 1234555431 0000 00 00
Q ss_pred cceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-cCCce------eeEEeec--Ceecc--
Q psy2776 279 LKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-SSPDI------QVKWLKK--GKEIK-- 347 (803)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~p~~------~i~W~~~--g~~l~-- 347 (803)
.........+...+....+.+|++++|.|.+ +.|.+ .+.|+|+ |..+.
T Consensus 153 ---------------------~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l 211 (291)
T 2gki_A 153 ---------------------SGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLL 211 (291)
T ss_dssp ---------------------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEE
T ss_pred ---------------------CCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEE
Confidence 0000001122233445567789999999999 66665 9999996 33211
Q ss_pred ----------ccceeEEEEcCceeEEEEeecCCCCCccEEEEEecc
Q psy2776 348 ----------ESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNV 383 (803)
Q Consensus 348 ----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 383 (803)
...++.+...+....|.|.++..+|+|.|.|.+.|.
T Consensus 212 ~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 257 (291)
T 2gki_A 212 IYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY 257 (291)
T ss_dssp EETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 023455545556678999999999999999999985
No 381
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.52 E-value=2.2e-13 Score=135.28 Aligned_cols=127 Identities=12% Similarity=0.198 Sum_probs=80.7
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeecc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQI 499 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 499 (803)
.+..+|+|.+++.+|+|.|.|.+.+........ ....|.|
T Consensus 78 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~----------------------------------------~~~~l~V 117 (221)
T 3m8o_H 78 KNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWG----------------------------------------QGTLVTV 117 (221)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEESCTTCCCBB----------------------------------------CCEEEEE
T ss_pred CCEEEEEECCCCHHHCEEEEEEEECCChhheEC----------------------------------------CCEEEEE
Confidence 456789999999999999999998863101110 0223333
Q ss_pred C-CCCCCccceeeeccccceEEeecceeEEEEEEcC-cCC--CeeEEeeCCeeecCCCcEEEE-ecCC----eEEEEEee
Q psy2776 500 Q-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPR--PEISWMKNGAEITDSKACRIF-IDEE----TSTIAIYS 570 (803)
Q Consensus 500 ~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~--~~v~W~~~g~~i~~~~~~~~~-~~~~----~~~L~i~~ 570 (803)
. .++..|.+...... .. .+|+.+.|.|.+.+ .|. +.+.|+++|..+......... ..++ .+.|.|..
T Consensus 118 ~~~~~~~p~v~~~~~~---~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 193 (221)
T 3m8o_H 118 SSASPTSPKVFPLSLC---ST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPA 193 (221)
T ss_dssp CSCCCBCCEEEEEECC---SC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEG
T ss_pred ecCCCCCCeEEEecCc---cc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECH
Confidence 3 22222322211111 11 67999999999998 675 489999999876321100000 0111 24699999
Q ss_pred eccCcCeEEEEEEEcCCCCe
Q psy2776 571 VVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 571 v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+..+|+|.|+|.|.|..+..
T Consensus 194 ~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 194 TQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp GGSCTTCEEEEEEEETTSCC
T ss_pred HHcCCCCeEEEEEEECCCCc
Confidence 99999999999999987653
No 382
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.52 E-value=1e-13 Score=138.13 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=108.8
Q ss_pred cCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eec------------------cceeEEEe----cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLI------------------KGRNITYE----NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~----~~~~~L~i~~v~ 205 (803)
....+.+|++++|.|.+.+.| .+.+.|+|.. ..+ ...++... .+..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (225)
T 1op3_H 8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR 87 (225)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence 456788999999999998765 6789999853 111 01223322 235789999999
Q ss_pred CCcceEEEEEEEcCCc-----Ce-e--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecc
Q psy2776 206 ESSEGRYTCKATNEAG-----TA-E--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVS 277 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g-----~~-~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (803)
.+|+|.|.|.+.|..| .. . ....|.|...+. .
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~--~-------------------------------------- 127 (225)
T 1op3_H 88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST--K-------------------------------------- 127 (225)
T ss_dssp GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSC--B--------------------------------------
T ss_pred hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCC--c--------------------------------------
Confidence 9999999999999865 11 1 234566654210 0
Q ss_pred ccceeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeecccc-ceeE
Q psy2776 278 KLKWLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKES-ARHI 353 (803)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~-~~~~ 353 (803)
. +.+....+.. .+.+|+.+.|.|.+ + .|.+ .+.|++++..+... ....
T Consensus 128 -------------------------~--P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~ 179 (225)
T 1op3_H 128 -------------------------G--PSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV 179 (225)
T ss_dssp -------------------------C--CEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCE
T ss_pred -------------------------C--CeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCce
Confidence 0 0000000111 12459999999999 5 4766 99999998764311 1111
Q ss_pred EEEcCc---eeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 354 ITSRGT---QRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 354 ~~~~~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
+..++. ...|.|.....+| |.|+|.|.|......+
T Consensus 180 ~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 217 (225)
T 1op3_H 180 LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV 217 (225)
T ss_dssp ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEE
T ss_pred eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccE
Confidence 122332 2458999998888 9999999997765443
No 383
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=116.99 Aligned_cols=89 Identities=19% Similarity=0.358 Sum_probs=80.2
Q ss_pred eEeccceeEEecCCeEEEEEEEeec-CCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
+...+....+.+|+++.|.|.+.|. |.|.+.|++++..+..+.++.+...+....|.|.++ +.+|+|.|+|.|.|..|
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~n~~g 82 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDI-TKLDDGTYRCKVVNDYG 82 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSC-CGGGCEEEEEEEECSSC
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecC-ChhhCeEEEEEEECCCC
Confidence 3445567889999999999999997 999999999999999888988877788889999999 79999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
.....+.|.|.
T Consensus 83 ~~~~~~~l~V~ 93 (97)
T 2bk8_A 83 EDSSYAELFVK 93 (97)
T ss_dssp EEEEEEEEEET
T ss_pred eEeEEEEEEEE
Confidence 99999988884
No 384
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.51 E-value=2.1e-13 Score=137.49 Aligned_cols=74 Identities=22% Similarity=0.513 Sum_probs=54.7
Q ss_pred eeccCcCeeeecCCcEEEEEEECcc--CCCeeEEEEcC--eec------------------cceeEEEe--c--CeeEEE
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGV--PTPDIKWYKDD--SLI------------------KGRNITYE--N--NVARFT 200 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~--p~p~i~W~~~~--~~~------------------~~~~~~~~--~--~~~~L~ 200 (803)
+...+..+.+.+|++++|.|.+.+. +.+.+.|+|.. ..+ ...++... . +..+|.
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 4445667888999999999999875 56789999853 111 11233322 1 357899
Q ss_pred EecCCCCcceEEEEEEEcCC
Q psy2776 201 VVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~~ 220 (803)
|.+++.+|+|.|.|.+.+..
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~ 103 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQ 103 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEEC
T ss_pred ECCCCcccCEEEEEeeecCC
Confidence 99999999999999999863
No 385
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=2.1e-14 Score=126.21 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=80.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeec---CCCceEEeeCCee-cc--CCCCeEEEee--C----ceEEEEEecCCCCC
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNKP-LL--SSPKKREIFD--G----ENIILELKEADSET 739 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~---p~~~v~W~~~~~~-l~--~~~~~~~~~~--~----~~~~L~i~~v~~~~ 739 (803)
-|.|+..+..+.+.+|++++|.|.+.|. |.|.|.|+|+... +. ...++.+... . ..+.|.|.++ +.+
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~ 85 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKA-KDN 85 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSC-CTT
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccC-Ccc
Confidence 3668888889999999999999999875 8999999997421 11 2345544321 1 2578999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEEeeccCCCCCc
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVDVEKVGRPSIN 774 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp~~~ 774 (803)
|+|.|+|+|.|..|.+++.+.|+|.+.+...|.+.
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~ 120 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEECCCCSCCCCC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEE
Confidence 99999999999999999999999987444555544
No 386
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.51 E-value=7.6e-14 Score=141.12 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=115.5
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eec-------------c--ceeEEE---ecCeeEEEEecCCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLI-------------K--GRNITY---ENNVARFTVVNCSE 206 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~-------------~--~~~~~~---~~~~~~L~i~~v~~ 206 (803)
+...+..+.+.+|+.++|.|.+.+.|.+.+.|+|.. ... . ..++.. ..+..+|.|.+++.
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLL 83 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCG
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCCh
Confidence 344466788899999999999999899999999932 110 0 011111 23456899999999
Q ss_pred CcceEEEEEEEcCCc------CeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccc
Q psy2776 207 SSEGRYTCKATNEAG------TAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLK 280 (803)
Q Consensus 207 ~d~G~Y~C~a~n~~g------~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (803)
+|+|.|.|.+.|..| .......|.|.........
T Consensus 84 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~---------------------------------------- 123 (245)
T 3nfj_J 84 SDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFP---------------------------------------- 123 (245)
T ss_dssp GGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBC----------------------------------------
T ss_pred hhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCC----------------------------------------
Confidence 999999999998433 1112345666542100000
Q ss_pred eeeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CC-ceeeEEeecCeeccccceeEEE--
Q psy2776 281 WLARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SP-DIQVKWLKKGKEIKESARHIIT-- 355 (803)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p-~~~i~W~~~g~~l~~~~~~~~~-- 355 (803)
+.+....+....+..|+.+.|.|.+ + .| ...+.|+++|.++.........
T Consensus 124 -------------------------P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 178 (245)
T 3nfj_J 124 -------------------------PEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPL 178 (245)
T ss_dssp -------------------------CEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCE
T ss_pred -------------------------CceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEECCCCcccccccc
Confidence 0000011122223458999999999 5 44 3489999999998754322110
Q ss_pred ------EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeeee
Q psy2776 356 ------SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKWL 392 (803)
Q Consensus 356 ------~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~~ 392 (803)
.++.. ..|.|.....+| .|.|+|.+.+........|.
T Consensus 179 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~~~~~ 225 (245)
T 3nfj_J 179 KEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 225 (245)
T ss_dssp ESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSSSCCC
T ss_pred cccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCccccc
Confidence 12332 467888887777 66999999998766655663
No 387
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.51 E-value=2.2e-13 Score=140.61 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=59.4
Q ss_pred eEEeecceeEEEEEEcC-cC-CCeeEEeeC--Ceeec------------CCCcEEEEecCCeEEEEEeeeccCcCeEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFG-FP-RPEISWMKN--GAEIT------------DSKACRIFIDEETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g-~p-~~~v~W~~~--g~~i~------------~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C 581 (803)
..+.+|++++|.|.+.+ .+ .+.+.|+|. +..+. ...++.+........|.|.+++.+|+|.|.|
T Consensus 149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C 228 (280)
T 3fku_X 149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC 228 (280)
T ss_dssp EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEE
Confidence 67889999999999988 44 378999873 22221 1245666555566789999999999999999
Q ss_pred EEEcCCCC---eEEEEEEEEeee
Q psy2776 582 TATNAAGS---TSLDLSLQVLGY 601 (803)
Q Consensus 582 ~a~n~~g~---~s~s~~l~V~~~ 601 (803)
.+.|..+. ......|.|...
T Consensus 229 ~~~~~~~~~~~~g~~t~l~V~~~ 251 (280)
T 3fku_X 229 STWDSSLSAVVFGGGTKLTVLGQ 251 (280)
T ss_dssp EEEETTTTEEEEBCCCEEEEC--
T ss_pred EEecCCCCceEECCCEEEEECCC
Confidence 99987632 223345666543
No 388
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.8e-14 Score=119.19 Aligned_cols=92 Identities=24% Similarity=0.412 Sum_probs=79.1
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
...+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. +.++.+.. .. .|.|.++ +.+|+|.|+|.
T Consensus 5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~~--~L~i~~v-~~~d~G~Y~C~ 80 (100)
T 2edj_A 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE-QG--TLQIKNL-RISDTGTYTCV 80 (100)
T ss_dssp CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECT-TC--CEEEESC-CTTTCCEEEEE
T ss_pred CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcC-CC--EEEEccC-CcccCEEEEEE
Confidence 34589999988899999999999999999999999999999998874 34443332 22 6999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|.|..|..+..+.|.|.
T Consensus 81 a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVT 97 (100)
T ss_dssp EECSSCCCBCCEEEEEE
T ss_pred EEcCCCCEEEEEEEEEe
Confidence 99999999999999985
No 389
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.50 E-value=2.4e-13 Score=134.98 Aligned_cols=166 Identities=14% Similarity=0.224 Sum_probs=108.7
Q ss_pred cCeeeecCCcEEEEEEECccC--CCeeEEEEcC--ee---c---------------cceeEEEe----cCeeEEEEecCC
Q psy2776 152 KDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SL---I---------------KGRNITYE----NNVARFTVVNCS 205 (803)
Q Consensus 152 ~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~----~~~~~L~i~~v~ 205 (803)
....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ...++... .+..+|+|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence 457788999999999998755 5689999853 11 1 01233332 235689999999
Q ss_pred CCcceEEEEEEEcCCcCe---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 206 ESSEGRYTCKATNEAGTA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~~g~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
.+|+|.|.|.+.+..+.. .....|.|...+..
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~--------------------------------------------- 122 (220)
T 2fbj_H 88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESAR--------------------------------------------- 122 (220)
T ss_dssp GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCB---------------------------------------------
T ss_pred hhhCEEEEEEEeccccccceecCCEEEEecCCCCC---------------------------------------------
Confidence 999999999999875521 12345666543100
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCc--eeeEEeecCeeccc-cceeEEEEc
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPD--IQVKWLKKGKEIKE-SARHIITSR 357 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~--~~i~W~~~g~~l~~-~~~~~~~~~ 357 (803)
.| .+... + ...+..|+.++|.|.+ + .|. +.+.|++++..+.. ........+
T Consensus 123 --------------------~P--~v~~~-~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~ 178 (220)
T 2fbj_H 123 --------------------NP--TIYPL-T-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG 178 (220)
T ss_dssp --------------------CC--EEEEE-C-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSS
T ss_pred --------------------CC--EEEEe-e-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCC
Confidence 00 00000 1 1123469999999999 5 376 89999999887621 111112223
Q ss_pred Cce---eEEEEeecCCCCCccEEEEEeccccc
Q psy2776 358 GTQ---RKLVIKRVTQDDETDIGVLALNVKSV 386 (803)
Q Consensus 358 ~~~---~~l~i~~~~~~d~g~y~c~~~~~~~~ 386 (803)
+.. +.|.|.....+|.|.|+|.+.|..+.
T Consensus 179 g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 179 GRYTMSNQLTLPAVECPEGESVKCSVQHDSNP 210 (220)
T ss_dssp SCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCc
Confidence 332 35889889889999999999998765
No 390
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.50 E-value=1.9e-12 Score=125.56 Aligned_cols=158 Identities=15% Similarity=0.237 Sum_probs=106.1
Q ss_pred eeeeccccceeEEEEe--cCC---ceeeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccceee
Q psy2776 315 VTLVPHLGDATFQVEL--SSP---DIQVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVSKL 389 (803)
Q Consensus 315 ~~~~~~g~~~~l~C~~--~~p---~~~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~~~ 389 (803)
-..+..|+.++|.|.+ +.| ..+|.|+|||.++....
T Consensus 11 ~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT--------------------------------------- 51 (304)
T 3shs_A 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------------------------------------- 51 (304)
T ss_dssp CSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS---------------------------------------
T ss_pred CccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc---------------------------------------
Confidence 3445569999999998 567 67999999998865421
Q ss_pred eeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeecc
Q psy2776 390 KWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKA 469 (803)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~ 469 (803)
..|+|..+...|+|.|+|.+.+..|....+.. +.|....
T Consensus 52 ---------------------------------~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~-------VtVT~~a- 90 (304)
T 3shs_A 52 ---------------------------------ATLTVADATSENAGSYKVTVQDTDTMTSVESE-------VFLMEEA- 90 (304)
T ss_dssp ---------------------------------SEEEESSCCGGGCEEEEEEEEETTTCCEEECC-------CEEECBC-
T ss_pred ---------------------------------ceEEeeeccccCCeEEEEEEEECCCCeeeeee-------EEEeccC-
Confidence 13667777888999999999988776554321 1111100
Q ss_pred CcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEE--cC-cC-----CCeeE
Q psy2776 470 DTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKY--FG-FP-----RPEIS 541 (803)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~--~g-~p-----~~~v~ 541 (803)
.+.+.+..| ....+..|..+.|.+.+ .| .| ..+++
T Consensus 91 ------------------------~l~i~it~P-------------~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQ 133 (304)
T 3shs_A 91 ------------------------ELIVNITEP-------------QHFYVSSQTDVELHATVKFSGGKTPADNYELHYS 133 (304)
T ss_dssp ------------------------CEEEEESSC-------------SEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEE
T ss_pred ------------------------ceeEEecCC-------------CceeccCCCeEEEEEEEeccCCCCcccCCCceeE
Confidence 111222221 23344557788998887 53 44 46899
Q ss_pred EeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCC--eEEEEEEEEee
Q psy2776 542 WMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGS--TSLDLSLQVLG 600 (803)
Q Consensus 542 W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~--~s~s~~l~V~~ 600 (803)
|+|++..+... ..|.+......++|.|+|.++|..+. .+.++.+.+..
T Consensus 134 WyKngt~IsgA-----------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~ 183 (304)
T 3shs_A 134 WSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLAT 183 (304)
T ss_dssp EEETTEEEESS-----------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECE
T ss_pred EeeCCeEccCc-----------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEc
Confidence 99999877542 35677778889999999999998764 45555555544
No 391
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.50 E-value=2.1e-14 Score=141.14 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=46.0
Q ss_pred ecceeEEEEEEcCc-CC-CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 522 VKSQWKVEVKYFGF-PR-PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~-~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
.|..+.|.|.+.|. |+ +.+.|+|+|..+............++ +.|.|.....+|.|.|+|.|.|....
T Consensus 123 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 123 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred cCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 35669999999996 44 48999999998864322112212221 34555555557799999999998654
No 392
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.50 E-value=8e-14 Score=137.87 Aligned_cols=138 Identities=11% Similarity=0.140 Sum_probs=78.6
Q ss_pred ecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeec
Q psy2776 419 ENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQ 498 (803)
Q Consensus 419 ~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 498 (803)
..+...|+|.+++.+|+|.|.|.+.+..+...... + ....|.
T Consensus 71 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---~-----------------------------------~~~~l~ 112 (215)
T 3nl4_H 71 TSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLW---G-----------------------------------PGTLVT 112 (215)
T ss_dssp CSSEEEEEESSCCGGGCEEEEEEEECSSSSCEEEE---C-----------------------------------CCEEEE
T ss_pred eCCEEEEEECCCCcccCEEEEEEEecCCCccceEE---c-----------------------------------CCEEEE
Confidence 45667899999999999999999998754211100 0 022333
Q ss_pred cC-CCCCCccceeeeccccceEEeecceeEEEEEEcCcCCC--eeEEeeCCeeecCCCcEEEEecCCeEEE-EEeeeccC
Q psy2776 499 IQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRP--EISWMKNGAEITDSKACRIFIDEETSTI-AIYSVVRA 574 (803)
Q Consensus 499 v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~~~g~~i~~~~~~~~~~~~~~~~L-~i~~v~~~ 574 (803)
|. .++..|.+..... ...+.+|+.+.|.|.+.+.+++ .+.|+++|..+...........++...+ ....+...
T Consensus 113 V~~~~~~~P~i~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~~ 189 (215)
T 3nl4_H 113 VSSGQPKAPSVFPLAP---CCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSS 189 (215)
T ss_dssp ECSSCCBCCEEEEECC---CTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEECC-
T ss_pred EeCCCcCCCEEEEecC---CccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeEecCceECCCCCEEEEEEEEEecc
Confidence 33 2222222221111 1234579999999999987553 5779999975432211111111222221 22456667
Q ss_pred cCeEEEEEEEcCCCCeEEEEEEEE
Q psy2776 575 DTSTYTVTATNAAGSTSLDLSLQV 598 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~~s~s~~l~V 598 (803)
| |.|+|.|.|..|.......|.+
T Consensus 190 d-g~ytC~v~~~~~~~~~~~~l~~ 212 (215)
T 3nl4_H 190 S-QPVTCNVAHPATNTKVDKTVAP 212 (215)
T ss_dssp ---CCEEEEEEGGGTEEEEEECCS
T ss_pred C-CEEEEEEEeCCCCcceEEecCC
Confidence 7 9999999999988777666554
No 393
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=116.49 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCeeEeccceeE--EecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKT--VKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~--v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
||.|+.++.... +.+|+.+.|.|.+.+ |.+.+.|+|||.+|..+.++.+..++...+|.|.++ +.+|+|.|+|.|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 81 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPAT-QPSDGGEFQCVAG 81 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSC-CGGGCSEEEEECS
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCC-ChhhcEEEEEEEc
Confidence 677776666544 468999999999966 889999999999999999999999999999999999 7999999999997
Q ss_pred ccCcceeeeEEEEE
Q psy2776 750 NELGSATHGARVTV 763 (803)
Q Consensus 750 N~~G~~~~~~~l~V 763 (803)
|. +.++.|+|
T Consensus 82 n~----~~~~~ltV 91 (91)
T 2lvc_A 82 DE----CAYFTVTI 91 (91)
T ss_dssp SC----EEEEEEEC
T ss_pred ce----EEEEEEEC
Confidence 74 55555554
No 394
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.49 E-value=2.2e-13 Score=117.05 Aligned_cols=90 Identities=23% Similarity=0.491 Sum_probs=78.7
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC--CeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP--KKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
|+.|...+....+.+|+++.|.|.+.| |.+.+.|+|+|..+..+. ++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~ 84 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA-TKADAAEYSVMTT 84 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEE-CTTTCSEEEEEET
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCC-CcccCEEEEEEEC
Confidence 455788888899999999999999987 779999999999998887 678888888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEeec
Q psy2776 750 NELGSATHGARVTVDVEK 767 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~~~ 767 (803)
| .+.++.|.|..++
T Consensus 85 n----~~~~~~l~V~~~p 98 (103)
T 1x44_A 85 G----GQSSAKLSVDLKS 98 (103)
T ss_dssp T----EEEEEEEEEECCC
T ss_pred C----CcEEEEEEEeCCC
Confidence 8 5777888886544
No 395
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.49 E-value=3.4e-13 Score=139.19 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=58.0
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec------------------cceeEEEe---cCeeEEE
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI------------------KGRNITYE---NNVARFT 200 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~------------------~~~~~~~~---~~~~~L~ 200 (803)
.+.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|++. .. ...++... .+..+|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 3455666777889999999999999888888999999641 10 01233332 2456899
Q ss_pred EecCCCCcceEEEEEEEcC
Q psy2776 201 VVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 201 i~~v~~~d~G~Y~C~a~n~ 219 (803)
|.+++.+|+|.|+|.+.|.
T Consensus 104 I~~v~~~D~G~Y~C~~~~~ 122 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDL 122 (279)
T ss_dssp ESSCCGGGCEEEEEEEEET
T ss_pred EccCCccCCEEEEEEEccc
Confidence 9999999999999999994
No 396
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=117.94 Aligned_cols=90 Identities=29% Similarity=0.474 Sum_probs=79.0
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++|..+..... ........|.|.++ +.+|+|.|+|.|.|
T Consensus 10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N 85 (99)
T 2yr3_A 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDA-LPEDHGTYTCLAEN 85 (99)
T ss_dssp EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEETTEEEEEECSC-CTTCCBCEEEEEEC
T ss_pred cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---EeeCCeEEEEECCC-ChhhCEEEEEEEEE
Confidence 488898888889999999999999999999999999999998876543 23355678999999 79999999999999
Q ss_pred cCcceeeeEEEEEE
Q psy2776 751 ELGSATHGARVTVD 764 (803)
Q Consensus 751 ~~G~~~~~~~l~V~ 764 (803)
.+|..+.++.|.|+
T Consensus 86 ~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 86 ALGQVSCSAWVTVH 99 (99)
T ss_dssp SSCEEEEECCEEEC
T ss_pred CCCeEEEEEEEEEC
Confidence 99999998888873
No 397
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.49 E-value=2.4e-13 Score=134.34 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=78.8
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeeeccC
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQ 500 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 500 (803)
+...|+|.+++.+|+|.|.|.+.+..+...... ....|.|.
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---------------------------------------~~~~L~V~ 116 (215)
T 1c5d_H 76 SQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWG---------------------------------------PGTMVTVS 116 (215)
T ss_dssp TEEEEEESSCCGGGCEEEEEEECCSSSCSCCBC---------------------------------------CCEEEEEC
T ss_pred ceEEEEECCCCcccCEEEEEEEecCCcccceEc---------------------------------------CCEEEEec
Confidence 456899999999999999999998653211100 02233443
Q ss_pred -CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCCeEEE--EEeeeccCc
Q psy2776 501 -SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEETSTI--AIYSVVRAD 575 (803)
Q Consensus 501 -~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~~~~L--~i~~v~~~d 575 (803)
.+|..|.+..... ...+.+|+.+.|.|.+.|. |.| .+.|+++|..+......... ..+...+ .|.....+|
T Consensus 117 ~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~g~~~~~s~L~~~~~~~ 192 (215)
T 1c5d_H 117 SAQTTAPSVYPLAP---GCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVL-QSGLYTLTSSVTSSTWPS 192 (215)
T ss_dssp SSCCBCCCEEEECC---CSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEE-ETTEEEEEEEEEESSTTT
T ss_pred CCCCCCCeEEeccC---ChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCccc-CCCCEEEEEEEecccCCC
Confidence 2233333322111 1224679999999999987 777 99999998754321111111 1122221 233333356
Q ss_pred CeEEEEEEEcCCCCeEEEEE
Q psy2776 576 TSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~ 595 (803)
|.|+|.|.|..|.......
T Consensus 193 -g~ytC~v~n~~~~~~~~~~ 211 (215)
T 1c5d_H 193 -QTVTCNVAHPASSTKVDKK 211 (215)
T ss_dssp -SCCEEEEEEGGGTEEEEEE
T ss_pred -CeEEEEEEeCCCCccEEEe
Confidence 9999999999887654443
No 398
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=119.10 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=82.8
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCC-ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAP-SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+.+..+.+|++++|.|.+.|.|.+ .+.|+|+|.+|..+.++.+..++...+|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 84 (104)
T 2eny_A 6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREA-APSDAGEVVFSV 84 (104)
T ss_dssp CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSC-CTTTCSCEEEEE
T ss_pred cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCC-CHHHCEEEEEEE
Confidence 347788888889999999999999999988754 899999999999889999988888899999999 799999999998
Q ss_pred EccCcceeeeEEEEEEeeccC
Q psy2776 749 TNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~~~~~ 769 (803)
.| ...++.|.|..++..
T Consensus 85 ~~----~~~~a~L~V~~~p~~ 101 (104)
T 2eny_A 85 RG----LTSKASLIVRERSGP 101 (104)
T ss_dssp TT----EEEEECEEEECCCSS
T ss_pred CC----eeEEEEEEEeCCCcC
Confidence 65 567888999754433
No 399
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.48 E-value=8e-14 Score=141.59 Aligned_cols=173 Identities=11% Similarity=0.091 Sum_probs=111.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--ee---ec------------CCCcEEEEec-CCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--AE---IT------------DSKACRIFID-EETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~~---i~------------~~~~~~~~~~-~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|+++.|.|.+. .+.+.+.|+|+. .. +. ...++.+... .....|.|.+++.+|+|.
T Consensus 12 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~ 90 (252)
T 1oga_E 12 YLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF 90 (252)
T ss_dssp EEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred eEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence 57789999999999985 467899999853 11 10 1234444321 235689999999999999
Q ss_pred EEEEEEcCCC---CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccc
Q psy2776 579 YTVTATNAAG---STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATT 655 (803)
Q Consensus 579 Y~C~a~n~~g---~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~ 655 (803)
|.|.+.|..+ .......|.|....
T Consensus 91 Y~C~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------------------------- 117 (252)
T 1oga_E 91 YLCASSSRSSYEQYFGPGTRLTVTEDL----------------------------------------------------- 117 (252)
T ss_dssp EEEEEESSTTSCCEECCCEEEEEESCG-----------------------------------------------------
T ss_pred EEEEEecCCccceeECCCEEEEEeccc-----------------------------------------------------
Confidence 9999998621 11122345543210
Q ss_pred eeeeeeecccCCCCCCCCeeEec-cceeEEecCCeEEEEEEEeec-CCC-ceEEeeCCeeccCCCCeE---E-----Eee
Q psy2776 656 ELVALATHATLGSPGQAPLFIER-FEEKTVKEKGTIRLMAKVKAS-PAP-SIVWFRNNKPLLSSPKKR---E-----IFD 724 (803)
Q Consensus 656 ~~~~~~~~~~~~~~~~~p~~~~~-~~~~~v~~g~~v~L~C~~~g~-p~~-~v~W~~~~~~l~~~~~~~---~-----~~~ 724 (803)
....+|.+... +....+.+|+.++|.|.+.|. |.+ .+.|++||.++..+.... . ..+
T Consensus 118 ------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 185 (252)
T 1oga_E 118 ------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALND 185 (252)
T ss_dssp ------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTT
T ss_pred ------------CCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCC
Confidence 00125555433 333445679999999999986 654 899999999886542211 0 011
Q ss_pred Cc---eEEEEEecCCCC-CCceeEEEEEEccCccee
Q psy2776 725 GE---NIILELKEADSE-TDAGDYKVVATNELGSAT 756 (803)
Q Consensus 725 ~~---~~~L~i~~v~~~-~D~G~Y~C~a~N~~G~~~ 756 (803)
+. ...|.|... .. +|.|.|+|.|.|..+...
T Consensus 186 gt~~~~s~L~i~~~-~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 186 SRYSLSSRLRVSAT-FWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp CCEEEEEEEEEEHH-HHTCTTCEEEEEEEECCBCTT
T ss_pred CCEEEEEEEEECHH-HhccCCCEEEEEEEcCCCCCC
Confidence 22 235778775 23 367899999999876654
No 400
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.48 E-value=1.8e-13 Score=138.29 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=109.1
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--ee---e---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--AE---I---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~~---i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +...+.|+|.. .. + . ...++.+..+ .....|.|.+++.
T Consensus 8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 87 (248)
T 3u2s_H 8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRV 87 (248)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCH
Confidence 5678899999999999763 44689998742 11 1 0 0144554432 3457899999999
Q ss_pred CcCeEEEEEEEcCCC--------------C--------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEccc
Q psy2776 574 ADTSTYTVTATNAAG--------------S--------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENL 631 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g--------------~--------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 631 (803)
+|+|.|.|.+.+..+ . ......|.|..
T Consensus 88 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~------------------------------- 136 (248)
T 3u2s_H 88 EDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS------------------------------- 136 (248)
T ss_dssp GGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS-------------------------------
T ss_pred HHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc-------------------------------
Confidence 999999999987421 0 00111222211
Q ss_pred ccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeC
Q psy2776 632 RDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRN 709 (803)
Q Consensus 632 ~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~ 709 (803)
....+|.+........+..|+.++|.|.+.|. | .+.+.|+++
T Consensus 137 ------------------------------------~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~ 180 (248)
T 3u2s_H 137 ------------------------------------ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG 180 (248)
T ss_dssp ------------------------------------CCCBCCEEEEECCC------CEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ------------------------------------cCCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeEC
Confidence 12235666544444455679999999999985 5 347999999
Q ss_pred CeeccCCCC-eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 710 NKPLLSSPK-KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 710 ~~~l~~~~~-~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|..+..... .....++. .+.|.|... ..+| |.|+|.|.|..+.......|.+
T Consensus 181 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 181 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp TBCTTEEECCCEECTTSCEEEEEEEEEEGG-GBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred CccCceeecCceECCCCCEEEEEEEEEChh-hcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 864321110 01111121 246888887 5677 9999999999988766555443
No 401
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.48 E-value=4.4e-14 Score=141.95 Aligned_cols=179 Identities=14% Similarity=0.187 Sum_probs=106.1
Q ss_pred ccccCCceee-eccccceeEEEEe-cC---Cce-eeEEeecCeeccccceeEEEEcCceeEEEEeecCCCCCccEEEEEe
Q psy2776 308 FLSKLPSVTL-VPHLGDATFQVEL-SS---PDI-QVKWLKKGKEIKESARHIITSRGTQRKLVIKRVTQDDETDIGVLAL 381 (803)
Q Consensus 308 ~~~~~~~~~~-~~~g~~~~l~C~~-~~---p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 381 (803)
++...+.... +.+|++++|.|.+ +. |.+ .+.|+|++..+...... . ......|.|.
T Consensus 18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~------~--------~~~~~~~~~~---- 79 (239)
T 1i1c_A 18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH------A--------PEKQSNSTLR---- 79 (239)
T ss_dssp EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC------C--------CEECTTSCEE----
T ss_pred EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccc------c--------ceEcCCCcEE----
Confidence 3334444444 6789999999999 54 765 99999998655432100 0 0000111111
Q ss_pred ccccceeeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCce
Q psy2776 382 NVKSVSKLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLS 461 (803)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~ 461 (803)
....|+|.+++.+|+|.|+|.+.+..+......
T Consensus 80 ---------------------------------------~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~-------- 112 (239)
T 1i1c_A 80 ---------------------------------------SVSELPIVERDWLNGKTFKCKVNSGAFPAPIEK-------- 112 (239)
T ss_dssp ---------------------------------------EEEEEECCHHHHHTTCCEEEEEECSSSSSCEEE--------
T ss_pred ---------------------------------------EEEEEEEEhhHccCCCeEEEEEecccCCCCcEE--------
Confidence 224599999999999999999999876532210
Q ss_pred eEEeeeccCcccCCchhhhhcccccccccccceeee--ccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-CC-
Q psy2776 462 IVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL--QIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PR- 537 (803)
Q Consensus 462 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~- 537 (803)
.+.+ .+..+|. +.+.... .....|+.+.|.|.+.|. |+
T Consensus 113 --------------------------------~v~~~~~~~~~P~---v~v~~~~---~~~~~g~~~~L~C~~~g~~P~~ 154 (239)
T 1i1c_A 113 --------------------------------SISKPEGTPRGPQ---VYTMAPP---KEEMTQSQVSITCMVKGFYPPD 154 (239)
T ss_dssp --------------------------------EECCCSSCCBCCE---EEEECCC---GGGGGSSEEEEEEEEEEEBSSC
T ss_pred --------------------------------EEecCCCCCcCCE---EEEECCC---hHHhcCCcEEEEEEEeeeECCC
Confidence 1111 2223332 1111111 111247889999999985 44
Q ss_pred CeeEEeeCCeeecCCCcEEEEecCCe-----EEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 538 PEISWMKNGAEITDSKACRIFIDEET-----STIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 538 ~~v~W~~~g~~i~~~~~~~~~~~~~~-----~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
..+.|+|+|..+............++ +.|.|.....+|.|.|+|.|.|....
T Consensus 155 ~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 155 IYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp CEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred eEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 48999999998864322111112221 23555555556799999999998654
No 402
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.47 E-value=7.6e-14 Score=117.96 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=77.9
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
...+|.|...+....+.+|+.+.|.|.+.|.| |.+.|+|+|..+..+.++.+. + ..|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~~-~~~D~G~Y~C~a 79 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--G--EEVEVRDS-IPADSGLYACVT 79 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--S--SEEEESSC-CGGGSEEEEEEE
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--C--CEEEECCC-ChHHCEEEEEEe
Confidence 34578888888889999999999999999998 799999999999877776543 3 37999999 799999999999
Q ss_pred EccCcceeeeEEEEE
Q psy2776 749 TNELGSATHGARVTV 763 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V 763 (803)
.|..|..+..+.|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999999998888877
No 403
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=117.53 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=81.8
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..||.|...+....+.+|+++.|.|.+.+ |.+.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 83 (103)
T 2edf_A 6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGA-SLKDAGEYTCEVE 83 (103)
T ss_dssp CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSC-CTTTCSEEEEECS
T ss_pred CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCC-CcccCEEEEEEEc
Confidence 34888999888999999999999999997 888999999999999888999888888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEeec
Q psy2776 750 NELGSATHGARVTVDVEK 767 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~~~ 767 (803)
| .+.++.|.|..++
T Consensus 84 n----~~~~~~l~V~~~p 97 (103)
T 2edf_A 84 A----SKSTASLHVEEKA 97 (103)
T ss_dssp S----CEEEEEEEECCCS
T ss_pred c----CCcEEEEEEeCCC
Confidence 9 4677888885433
No 404
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.47 E-value=3.4e-13 Score=137.05 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=85.1
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee--eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccccceeee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT--AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTTNL 497 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 497 (803)
.+..+|+|.+++.+|+|.|.|.+.+.... .... ....|
T Consensus 76 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~----------------------------------------~~~~l 115 (253)
T 3liz_H 76 KNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWG----------------------------------------QGTLV 115 (253)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEEC----------------------------------------CCEEE
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCCcceeeEEC----------------------------------------CCEEE
Confidence 35678999999999999999999875311 0000 02233
Q ss_pred ccC-CCCCCccceeeeccccceEEeecceeEEEEEEcC-cCCC-eeEEeeCCeeecCCCcEEEEecC---CeEEEEEeee
Q psy2776 498 QIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFG-FPRP-EISWMKNGAEITDSKACRIFIDE---ETSTIAIYSV 571 (803)
Q Consensus 498 ~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g-~p~~-~v~W~~~g~~i~~~~~~~~~~~~---~~~~L~i~~v 571 (803)
.|. ..+..|.+..... ...+..|+.+.|.|.+.+ .|.+ .+.|+++|..+...........+ ..+.|.|.+.
T Consensus 116 ~V~~~~~~~P~i~~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~ 192 (253)
T 3liz_H 116 TVSAAKTTPPSVYPLAP---GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS 192 (253)
T ss_dssp EECSSCCBCCEEEEECC---------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETT
T ss_pred EEeccCCCCCeEEEecC---CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHH
Confidence 343 2222332221111 234567999999999998 6666 89999998733110000000000 1267999999
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
..+| |.|+|.|.|..+.......|.+.
T Consensus 193 ~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 193 TWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp STTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred HCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 9999 99999999999888877777765
No 405
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=117.50 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=79.2
Q ss_pred CCeeEeccce---eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEE---KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~---~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.++..+.. ..+.+|+++.|.|.+.|.|.+ +.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a 84 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEA-KVQDSGEFECRT 84 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSC-CTTTCEEEEEEC
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCC-ChhhCEEEEEEE
Confidence 5666666666 789999999999999999999 99999999999888998888888899999999 799999999999
Q ss_pred EccCcceeeeEEEEEEeeccC
Q psy2776 749 TNELGSATHGARVTVDVEKVG 769 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~~~~~ 769 (803)
.|..+ .+.|.|.+++..
T Consensus 85 ~n~~~----~~~l~V~~~P~p 101 (104)
T 2e6p_A 85 EGVSA----FFGVTVQDPSGP 101 (104)
T ss_dssp SSCCC----CEEEEEECCCCS
T ss_pred CCceE----EEEEEEcCCCCC
Confidence 99744 567777655443
No 406
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.46 E-value=8.3e-14 Score=120.91 Aligned_cols=93 Identities=24% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... ...|.|.++ +.+|+|.|+|.|.|.
T Consensus 10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~L~i~~v-~~~D~G~Y~C~a~n~ 86 (108)
T 3kvq_A 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRV-RKEDEGLYTCQACSV 86 (108)
T ss_dssp -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETT--TTEEEECSC-CGGGCEEEEEEEC--
T ss_pred CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCC--CcEEEEeec-CcccCEEEEEEEEeC
Confidence 78888888889999999999999999999999999999999887777655433 347999999 799999999999999
Q ss_pred CcceeeeEEEEEEeec
Q psy2776 752 LGSATHGARVTVDVEK 767 (803)
Q Consensus 752 ~G~~~~~~~l~V~~~~ 767 (803)
.|.....+.|.|.+++
T Consensus 87 ~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 87 LGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp --CEEEEEEEEEEC--
T ss_pred CCceEEEEEEEEeCCC
Confidence 9999999999997543
No 407
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=1.9e-13 Score=118.11 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
..+|.|...+....+.+|+++.|.|.+.|.|.+ +.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.
T Consensus 6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 83 (106)
T 2dlt_A 6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDV-RPEDEGDYTFVPD 83 (106)
T ss_dssp CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSC-CTTTCSCEEEEEE
T ss_pred CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCC-CcCCCEEEEEEEc
Confidence 348999999999999999999999999999888 99999999999888998888888889999999 7999999999999
Q ss_pred ccCcceeeeEEEEEE
Q psy2776 750 NELGSATHGARVTVD 764 (803)
Q Consensus 750 N~~G~~~~~~~l~V~ 764 (803)
|. ..+.++.|.|.
T Consensus 84 n~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 84 GY--ALSLSAKLNFL 96 (106)
T ss_dssp TS--CCCCCBCEEEE
T ss_pred cC--CceEEEEEEEE
Confidence 98 55566777775
No 408
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.46 E-value=1.5e-13 Score=124.40 Aligned_cols=84 Identities=24% Similarity=0.378 Sum_probs=74.2
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCC----------------------------eec-cCCCCeEEEeeCceEE
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNN----------------------------KPL-LSSPKKREIFDGENII 729 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~----------------------------~~l-~~~~~~~~~~~~~~~~ 729 (803)
+....+.+|+++.|.|.+.|.|.|.+.|+|++ ..+ ....++.+...+....
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~s~ 104 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI 104 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCEEE
Confidence 45678999999999999999999999999998 555 3556777777777789
Q ss_pred EEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 730 LELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 730 L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
|.|.++ +.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 105 L~I~~v-~~~DsG~Y~C~A~N~~G~~~~~~~L~V 137 (139)
T 1gxe_A 105 FTVEGA-EKEDEGVYTVTVKNPVGEDQVNLTVKV 137 (139)
T ss_dssp EECSCC-CTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEECCC-CcccCEEEEEEEEeCCceEEEEEEEEE
Confidence 999999 799999999999999999999888887
No 409
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.45 E-value=3.9e-13 Score=125.02 Aligned_cols=95 Identities=28% Similarity=0.475 Sum_probs=85.4
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEee-CceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFD-GENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+... .....|.|.++ +.+|+|.|+|.|.
T Consensus 40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 118 (154)
T 1fhg_A 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV-CGDDDAKYTCKAV 118 (154)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSC-CGGGCEEEEEEEE
T ss_pred CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCC-ChhcCEEEEEEEE
Confidence 388899888889999999999999999999999999999999988888877654 34678999999 7999999999999
Q ss_pred ccCcceeeeEEEEEEee
Q psy2776 750 NELGSATHGARVTVDVE 766 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~~ 766 (803)
|.+|.....+.|.|...
T Consensus 119 N~~G~~~~~~~l~V~~~ 135 (154)
T 1fhg_A 119 NSLGEATCTAELLVETM 135 (154)
T ss_dssp ETTEEEEEEEEEEEECC
T ss_pred ECCCeEEEEEEEEEeCc
Confidence 99999999999999653
No 410
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.45 E-value=7.6e-13 Score=129.80 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=103.3
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCC--e---ee-------cCCCcEEEEec---CCeEEEEEeeeccCcCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNG--A---EI-------TDSKACRIFID---EETSTIAIYSVVRADTSTYTV 581 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g--~---~i-------~~~~~~~~~~~---~~~~~L~i~~v~~~dsG~Y~C 581 (803)
...+.+|+++.|.|.+.+.+ +.+.|+|.. . .+ ....++.+..+ .+...|.|.+++.+|+|.|.|
T Consensus 10 ~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 88 (207)
T 1ypz_E 10 ALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC 88 (207)
T ss_dssp EEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred eEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence 57789999999999998754 489999853 1 11 02345655543 456799999999999999999
Q ss_pred EEEcCCC---------C--eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCC
Q psy2776 582 TATNAAG---------S--TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLG 650 (803)
Q Consensus 582 ~a~n~~g---------~--~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~ 650 (803)
.+.+..+ . ......|.|....
T Consensus 89 ~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~------------------------------------------------ 120 (207)
T 1ypz_E 89 AADTWHISEGYELGTDKLVFGQGTQVTVEPKS------------------------------------------------ 120 (207)
T ss_dssp EEECBCCCTTCCCCCCCCEECCCEEEEEECCC------------------------------------------------
T ss_pred EEecCCcccccccccceeeecCccEEEEccCC------------------------------------------------
Confidence 9998743 1 1122455553310
Q ss_pred CCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCCeEEEeeCceE
Q psy2776 651 PEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPKKREIFDGENI 728 (803)
Q Consensus 651 ~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~~~~~~~~~~~ 728 (803)
....+|.+... .+ .+.|.|.+.|. |. +.+.|+++ ..+...........+..+
T Consensus 121 -----------------~~~~~P~v~~~-------~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y 174 (207)
T 1ypz_E 121 -----------------QPPAKPSVFIM-------KN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPSGKY 174 (207)
T ss_dssp -----------------CCCCCCEEEEE-------EE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTTSSE
T ss_pred -----------------CCCCCCeEEEe-------CC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCCCcE
Confidence 01113433321 11 27999999986 54 69999999 666543222111222333
Q ss_pred EEEEecCCCCCCceeEEEEEEccCccee
Q psy2776 729 ILELKEADSETDAGDYKVVATNELGSAT 756 (803)
Q Consensus 729 ~L~i~~v~~~~D~G~Y~C~a~N~~G~~~ 756 (803)
.+ ......+|.|.|+|.|.|..+...
T Consensus 175 ~~--~~~~~~~~~~~ytC~v~~~~~~~~ 200 (207)
T 1ypz_E 175 SA--VKLGQYGDSNSVTCSVQHNSETVH 200 (207)
T ss_dssp EE--EECEEESSTTTCEEEEEETTEEEE
T ss_pred EE--EEeecccCCCcEEEEEEECCccEe
Confidence 33 233133678999999999887643
No 411
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.45 E-value=3.3e-13 Score=118.42 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=68.6
Q ss_pred ecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC-------ceEEEEEecCCCCCCceeEEEEEEccCcceee
Q psy2776 685 KEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG-------ENIILELKEADSETDAGDYKVVATNELGSATH 757 (803)
Q Consensus 685 ~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~-------~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~ 757 (803)
..+..+.|.|.+.|.|.|.|+|+|||.+|..+.++.+.... ....|.|.++ +..|+|.|+|+|.|.+|.+++
T Consensus 13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~~~ 91 (126)
T 1he7_A 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQASA 91 (126)
T ss_dssp CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESC-CGGGCEEEEEEEEETTEEEEE
T ss_pred ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcC-CCCCCEEEEEEEEECCCeEEE
Confidence 35789999999999999999999999999988776544321 2467999999 799999999999999999999
Q ss_pred eEEEEEEe
Q psy2776 758 GARVTVDV 765 (803)
Q Consensus 758 ~~~l~V~~ 765 (803)
++.|.|..
T Consensus 92 t~~l~v~~ 99 (126)
T 1he7_A 92 SIMAAFMD 99 (126)
T ss_dssp EEEECCCS
T ss_pred EEEEEEEc
Confidence 88888853
No 412
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.45 E-value=2.4e-13 Score=135.95 Aligned_cols=175 Identities=16% Similarity=0.219 Sum_probs=105.5
Q ss_pred CceeeeccccceeEEEEe-c-CCc--eeeEEeecCeec-cccceeEEEEcCceeEEEEeecCCCCCccEEEEEeccccce
Q psy2776 313 PSVTLVPHLGDATFQVEL-S-SPD--IQVKWLKKGKEI-KESARHIITSRGTQRKLVIKRVTQDDETDIGVLALNVKSVS 387 (803)
Q Consensus 313 ~~~~~~~~g~~~~l~C~~-~-~p~--~~i~W~~~g~~l-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~~~~ 387 (803)
|....+..|+.++|.|.+ + .|. ..+.|+++|..+ ........ ....|.|.
T Consensus 20 p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~---------------~~~~g~~~---------- 74 (231)
T 2w59_A 20 PSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQ---------------EHFNGTYS---------- 74 (231)
T ss_dssp CCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEE---------------ECTTSCEE----------
T ss_pred cChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccce---------------ECCCCcEE----------
Confidence 444455679999999999 5 463 499999998877 32111100 01112221
Q ss_pred eeeeeecCCCceeeeeeecCcceeeeeeeEEecCeeEEEEEeccCCCceeEEEEeeCCceeeeeecccCCCCceeEEeee
Q psy2776 388 KLKWLDFGSGGWWFESKYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAGTAETRTMWPGLPLSIVVSLR 467 (803)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~~~~~~~~~~~~~~v~~~ 467 (803)
....|+|.++..+|.|.|+|.|.|..+.... .+.|.+.
T Consensus 75 ---------------------------------~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~---------~~~v~~~ 112 (231)
T 2w59_A 75 ---------------------------------ASSAVPVSTQDWLSGERFTCTVQHEELPLPL---------SKSVYRN 112 (231)
T ss_dssp ---------------------------------EEEEEECCHHHHHTTCCEEEEEECTTCSSCE---------EEEECCC
T ss_pred ---------------------------------EEEEEEecchhccCCCEEEEEEEcCCCCCce---------EEEEecC
Confidence 1235899999999999999999997654222 1111100
Q ss_pred ccCcccCCchhhhhcccccccccccceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCc-C-CCeeEEeeC
Q psy2776 468 KADTRVKPPMKRVLQKLAVPFSYKTRTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P-RPEISWMKN 545 (803)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p-~~~v~W~~~ 545 (803)
. ....+| .+.+.... ... ..|..+.|.|.+.|. | .+.+.|+|+
T Consensus 113 --~---------------------------~~~~~P---~v~v~~~~--~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~ 157 (231)
T 2w59_A 113 --T---------------------------GPTTPP---LIYPFAPH--PEE-LSLSRVTLSCLVRGFRPRDIEIRWLRD 157 (231)
T ss_dssp --C---------------------------SCCBCC---EEEEECCC--GGG-GGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred --C---------------------------CCCcCC---EEEEeCCC--HHH-hccCceEEEEEEEeccCCCcEEEEEEC
Confidence 0 000112 11111111 011 124579999999996 4 368999999
Q ss_pred CeeecCCCcEE--EEec--------CC------eEEEEEeeeccCcCeEEEEEEEcCCCC
Q psy2776 546 GAEITDSKACR--IFID--------EE------TSTIAIYSVVRADTSTYTVTATNAAGS 589 (803)
Q Consensus 546 g~~i~~~~~~~--~~~~--------~~------~~~L~i~~v~~~dsG~Y~C~a~n~~g~ 589 (803)
|..+..+.... .... .+ .+.|.|.....+|.|.|+|.|.|....
T Consensus 158 g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 158 HRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp TEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred CEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 99987653111 1111 11 256888888888999999999998754
No 413
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.45 E-value=5.9e-13 Score=133.08 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=113.0
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|+++.|.|.+.+. +...+.|+|.. . .+ . ...++.+..+ .....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS 88 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence 4668899999999999763 34679999742 1 11 0 1135555433 2456799999999
Q ss_pred CcCeEEEEEEEcCCC-----Ce---EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEec
Q psy2776 574 ADTSTYTVTATNAAG-----ST---SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAEN 645 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-----~~---s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 645 (803)
+|+|.|.|.+.+..+ .. .....|.|...
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~-------------------------------------------- 124 (230)
T 3n9g_H 89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSA-------------------------------------------- 124 (230)
T ss_dssp GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSS--------------------------------------------
T ss_pred hhCEEEEEEEccCCCCcccccccccCCCEEEEEEec--------------------------------------------
Confidence 999999999988641 11 12233444221
Q ss_pred CCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC---eE
Q psy2776 646 SVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK---KR 720 (803)
Q Consensus 646 ~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~---~~ 720 (803)
...+|.+........+..|+.++|.|.+.|. | .+.+.| ++..+..+.. ..
T Consensus 125 -----------------------~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~ 179 (230)
T 3n9g_H 125 -----------------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAV 179 (230)
T ss_dssp -----------------------CCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCE
T ss_pred -----------------------CCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCce
Confidence 1125555544444455689999999999986 4 346899 6555432110 01
Q ss_pred EEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 721 EIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 721 ~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
...++. .+.|.|... ..+| |.|+|.|.|..+.......|.|
T Consensus 180 ~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~~~v 223 (230)
T 3n9g_H 180 LQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKRVEP 223 (230)
T ss_dssp ECTTSCEEEEEEEEEEST-TBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred ECCCCCEEEEEEEEECHH-HcCC-CeEEEEEEECCCCcceEEEccC
Confidence 111121 347889988 6778 9999999999988776665555
No 414
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.45 E-value=2.1e-13 Score=138.51 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=69.9
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee--------eeeecccCCCCceeEEeeeccCcccCCchhhhhcccccccccc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT--------AETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYK 491 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (803)
.+...|+|.+++.+|+|.|.|.+.+..|. ......
T Consensus 76 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~------------------------------------- 118 (257)
T 3bn9_D 76 KNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNW------------------------------------- 118 (257)
T ss_dssp TTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEE-------------------------------------
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeee-------------------------------------
Confidence 35678999999999999999999987541 000000
Q ss_pred cceeeeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC----eE
Q psy2776 492 TRTTNLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE----TS 564 (803)
Q Consensus 492 ~~~~~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~----~~ 564 (803)
.....|.|.. ++..|.+.+... ...+.+|+.++|.|.+.|. |.+ .+.|++++..+.......+...++ .+
T Consensus 119 ~~~t~L~V~~~~~~~P~v~~~~p---~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s 195 (257)
T 3bn9_D 119 GQGTMVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS 195 (257)
T ss_dssp CCCEEEEECSSCCBCCEECCCCC--------------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEE
T ss_pred CCcEEEEecCCCCcCCcEEEecC---cccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEE
Confidence 0022344443 222222221111 1235679999999999986 777 999999987642110001111111 25
Q ss_pred EEEEeeeccCcCeEEEEEEEcCCCCeEEEEEE
Q psy2776 565 TIAIYSVVRADTSTYTVTATNAAGSTSLDLSL 596 (803)
Q Consensus 565 ~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l 596 (803)
.|.|.++..+| |.|+|.|.|..........+
T Consensus 196 ~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 196 VVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp ECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred EEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 68888888778 99999999976554444433
No 415
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-13 Score=145.13 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=110.4
Q ss_pred EeecceeEEEEEEcCc---CC-CeeEEeeCCeeecCCCcE--EEEec---CCeEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 520 LSVKSQWKVEVKYFGF---PR-PEISWMKNGAEITDSKAC--RIFID---EETSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 520 v~~g~~v~l~C~~~g~---p~-~~v~W~~~g~~i~~~~~~--~~~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
+.+|+.++|.|.+.|. |. ..|.|+|++..+...... ..... ...+.|.|..+..+|+|.|+|.|.|..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6889999999999988 33 369999998765422100 00000 123579999999999999999999987653
Q ss_pred EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCC
Q psy2776 591 SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPG 670 (803)
Q Consensus 591 s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~ 670 (803)
.....+.+.. ...
T Consensus 260 ~~~~~v~~~~-------------------------------------------------------------------~~~ 272 (376)
T 2aty_A 260 PIEKTISKTK-------------------------------------------------------------------GRP 272 (376)
T ss_pred ceEEEEcCCC-------------------------------------------------------------------CCC
Confidence 3322221100 011
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCCeE--EEeeCc---eEEEEEecCCCCCCcee
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPKKR--EIFDGE---NIILELKEADSETDAGD 743 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~~~--~~~~~~---~~~L~i~~v~~~~D~G~ 743 (803)
.+|.+...+.......|+.++|.|.+.|+ | .+.|.|+|||.++....... ...++. ...|.|... ..+|.|.
T Consensus 273 ~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~-~~~~~~~ 351 (376)
T 2aty_A 273 KAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKS-NWEAGNT 351 (376)
T ss_pred cCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHH-HhCCCCc
Confidence 25666655555445568999999999997 3 45899999999875432221 122332 345677666 4567999
Q ss_pred EEEEEEccCcc
Q psy2776 744 YKVVATNELGS 754 (803)
Q Consensus 744 Y~C~a~N~~G~ 754 (803)
|+|.|.|..-.
T Consensus 352 YtC~v~h~~l~ 362 (376)
T 2aty_A 352 FTCSVLHEGLH 362 (376)
T ss_pred EEEEEEeCCCC
Confidence 99999997654
No 416
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.45 E-value=7.8e-13 Score=113.57 Aligned_cols=86 Identities=24% Similarity=0.343 Sum_probs=79.2
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 95 (103)
T 3qp3_A 16 RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT 95 (103)
T ss_dssp CCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEE
Confidence 46788999999999999999999999999999998888888877777789999999999999999999999999999999
Q ss_pred EEEeee
Q psy2776 596 LQVLGY 601 (803)
Q Consensus 596 l~V~~~ 601 (803)
|.|.+.
T Consensus 96 l~V~~~ 101 (103)
T 3qp3_A 96 LDVTGG 101 (103)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999764
No 417
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.45 E-value=1.7e-14 Score=142.55 Aligned_cols=167 Identities=13% Similarity=0.110 Sum_probs=104.8
Q ss_pred ceEEeecceeEEEEEEcCcCC---CeeEEeeCCeeecCCCcE-EE-Eec---CCeEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPR---PEISWMKNGAEITDSKAC-RI-FID---EETSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~---~~v~W~~~g~~i~~~~~~-~~-~~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
...+.+|+.++|.|.+.|.++ +.+.| + +..+...... .. ... ...+.|.|.++..+|+|.|+|.|.|..+
T Consensus 13 ~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~ 90 (214)
T 1ow0_A 13 LEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES 90 (214)
T ss_dssp HHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred hHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecCCC
Confidence 455678999999999999865 68999 4 4333221000 00 000 1246799999999999999999999876
Q ss_pred CeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCC
Q psy2776 589 STSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGS 668 (803)
Q Consensus 589 ~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~ 668 (803)
.......+.+..
T Consensus 91 ~~~~~~~i~~~~-------------------------------------------------------------------- 102 (214)
T 1ow0_A 91 KTPLTATLSKSG-------------------------------------------------------------------- 102 (214)
T ss_dssp SSCEEEEEECCS--------------------------------------------------------------------
T ss_pred CCceeEeeccCC--------------------------------------------------------------------
Confidence 543333332100
Q ss_pred CCCCCeeEecc-ceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCCC----eEEE---eeCce---EEEEEecC
Q psy2776 669 PGQAPLFIERF-EEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSPK----KREI---FDGEN---IILELKEA 735 (803)
Q Consensus 669 ~~~~p~~~~~~-~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~~----~~~~---~~~~~---~~L~i~~v 735 (803)
...+|.+...+ ....+..|+.++|.|.+.|. |. +.|.|+|||..+..+.. .... .++.. ..|.|...
T Consensus 103 ~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~ 182 (214)
T 1ow0_A 103 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAE 182 (214)
T ss_dssp SCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHH
T ss_pred CCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHH
Confidence 01145543322 22346679999999999996 54 48999999998865421 1222 22322 33455543
Q ss_pred CCCCCceeEEEEEEccCcc
Q psy2776 736 DSETDAGDYKVVATNELGS 754 (803)
Q Consensus 736 ~~~~D~G~Y~C~a~N~~G~ 754 (803)
..+|.|.|+|.|.|....
T Consensus 183 -~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 183 -DWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp -HHHHTCCEEEEEECTTCT
T ss_pred -HccCCCEEEEEEECCCCC
Confidence 224589999999998754
No 418
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.5e-13 Score=119.06 Aligned_cols=92 Identities=25% Similarity=0.447 Sum_probs=79.7
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccC-CCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLS-SPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. +.++.+..++ +|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v-~~~D~G~Y~C~a 81 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYA-KLGDTGRYTCIA 81 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESC-CGGGCCCEEEEE
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccC-CcCCCEEEEEEE
Confidence 3488888888889999999999999999999999999999998864 4555544433 6999999 799999999999
Q ss_pred EccCcceeeeEEEEEEe
Q psy2776 749 TNELGSATHGARVTVDV 765 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~ 765 (803)
.|..|.....+.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (118)
T 2eo9_A 82 STPSGEATWSAYIEVQE 98 (118)
T ss_dssp ECSSCEEEEECCEEEEC
T ss_pred EcCCCcEEEEEEEEEEe
Confidence 99999999999988864
No 419
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.1e-13 Score=118.61 Aligned_cols=86 Identities=17% Similarity=0.352 Sum_probs=76.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+. ..++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 32 ~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 110 (118)
T 2e7c_A 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIR 110 (118)
T ss_dssp SCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEE
T ss_pred CCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEE
Confidence 46788999999999999999999999999999987 45666666667789999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 111 l~V~~~P 117 (118)
T 2e7c_A 111 IRVVEKA 117 (118)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9997754
No 420
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=111.78 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=70.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.+ |.|.++|+|||.+|..+.++.+..++....|.|.++..+|+|.|+|.|.| .+.++.
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~ 78 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL 78 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence 4678899999999999976 88999999999999999999988888888999999999999999999854 566777
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.|..
T Consensus 79 l~V~e 83 (84)
T 2lu7_A 79 VSVEE 83 (84)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 88765
No 421
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.44 E-value=5e-13 Score=114.67 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=70.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEe--eC---ceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIF--DG---ENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~--~~---~~~~L~i~~v~~~~D~G~Y~C 746 (803)
||++.... ....|+.+.|.|.+.|.|.|.+.|+|+|.+|..+.+..... .+ ....|.|.++ +.+|+|.|+|
T Consensus 4 pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 79 (103)
T 1wwb_X 4 APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP-THMNNGDYTL 79 (103)
T ss_dssp CCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESC-CGGGCEEEEE
T ss_pred CCEEEecc---CceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCC-CcccCEEEEE
Confidence 56554322 13458899999999999999999999999998876642221 11 2356999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEE
Q psy2776 747 VATNELGSATHGARVTVD 764 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~ 764 (803)
.|+|.+|.++.++.|.|.
T Consensus 80 ~A~N~~G~~~~~~~l~V~ 97 (103)
T 1wwb_X 80 IAKNEYGKDEKQISAHFM 97 (103)
T ss_dssp EEECSSCEEEEEEEECCS
T ss_pred EEEeCCCcEeEEEEEEEC
Confidence 999999999999998884
No 422
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.44 E-value=4.9e-13 Score=117.31 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=79.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 15 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 94 (114)
T 2cqv_A 15 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 94 (114)
T ss_dssp CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEE
Confidence 35788999999999999999999999999999998888888877777889999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|...|
T Consensus 95 l~V~~~p 101 (114)
T 2cqv_A 95 LTVVDKP 101 (114)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9998765
No 423
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.44 E-value=1.6e-12 Score=132.43 Aligned_cols=168 Identities=13% Similarity=0.154 Sum_probs=107.5
Q ss_pred CcCeeeecCCcEEEEEEECccC--CCeeEEEEcC--eecc------------------ceeEEEe----cCeeEEEEecC
Q psy2776 151 LKDSVAGFQSSVTLECVVSGVP--TPDIKWYKDD--SLIK------------------GRNITYE----NNVARFTVVNC 204 (803)
Q Consensus 151 ~~~~~v~~G~~~~L~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~----~~~~~L~i~~v 204 (803)
+....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. ..++... .+...|.|.++
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 92 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL 92 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence 4566788999999999998765 5789999863 1110 1122222 24578999999
Q ss_pred CCCcceEEEEEEEcCCcCe-e--eEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccce
Q psy2776 205 SESSEGRYTCKATNEAGTA-E--TSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKW 281 (803)
Q Consensus 205 ~~~d~G~Y~C~a~n~~g~~-~--~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (803)
+.+|+|.|.|.+.|..+.. . ....|.|...+. .
T Consensus 93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~--~------------------------------------------ 128 (261)
T 2xqy_G 93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKT--T------------------------------------------ 128 (261)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCC--B------------------------------------------
T ss_pred CcccCeEEEEEEecCCCcceEECCCEEEEEccCCC--C------------------------------------------
Confidence 9999999999999865321 1 234566654210 0
Q ss_pred eeccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeecccc-ceeEEEEc
Q psy2776 282 LARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKES-ARHIITSR 357 (803)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~-~~~~~~~~ 357 (803)
.| .+....+.. .+..|+.++|.|.+ + .|.+ .+.|++++..+... ....+ ..
T Consensus 129 ---------------------~P--~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~-~~ 183 (261)
T 2xqy_G 129 ---------------------AP--SVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL-QS 183 (261)
T ss_dssp ---------------------CC--EEEEECCCC-C--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE-ET
T ss_pred ---------------------CC--eEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCcee-cC
Confidence 00 000001111 23458999999999 5 4765 99999998876421 11111 22
Q ss_pred Cc---eeEEEEeecCCCCCccEEEEEecccccee
Q psy2776 358 GT---QRKLVIKRVTQDDETDIGVLALNVKSVSK 388 (803)
Q Consensus 358 ~~---~~~l~i~~~~~~d~g~y~c~~~~~~~~~~ 388 (803)
+. ...|.|.....+| |.|+|.+.|......
T Consensus 184 g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 184 DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK 216 (261)
T ss_dssp TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred CcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence 22 2568898888888 999999999765544
No 424
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=117.23 Aligned_cols=94 Identities=18% Similarity=0.284 Sum_probs=76.2
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeec---CCCceEEeeCCe-eccC--CCCeEEEee--C----ceEEEEEecCCCC
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKAS---PAPSIVWFRNNK-PLLS--SPKKREIFD--G----ENIILELKEADSE 738 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~---p~~~v~W~~~~~-~l~~--~~~~~~~~~--~----~~~~L~i~~v~~~ 738 (803)
..+.|+..+..+.|.+|++++|.|.+.|. |.|.|.|+|+.. .+.. +.++.+... . ..+.|.|.++ ..
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~ 89 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKV-VL 89 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSC-CT
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeC-Ch
Confidence 36778888999999999999999999885 789999999752 2222 234444321 1 2578999999 79
Q ss_pred CCceeEEEEEEccCcceeeeEEEEEEe
Q psy2776 739 TDAGDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 739 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|+|.|+|+|.|..|.+++.+.|.|++
T Consensus 90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 90 GDRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp TTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred hhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 999999999999999999999999975
No 425
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.43 E-value=1.4e-12 Score=111.31 Aligned_cols=89 Identities=21% Similarity=0.380 Sum_probs=80.4
Q ss_pred CCCeeEeccce-eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.+|.|...+.. ..+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a- 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNC-QMTDDSEYYVTA- 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEE-CTTTCCEEEEEE-
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCC-CcCcCEEEEEEE-
Confidence 47889888887 6889999999999998 7999999999999999888999888888889999999 799999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
|..+.++.|.|..
T Consensus 83 ---g~~~~~~~l~V~~ 95 (100)
T 2yuv_A 83 ---GDEKCSTELFVRS 95 (100)
T ss_dssp ---TTEEEEEEEEECC
T ss_pred ---CCceEEEEEEEec
Confidence 7788888898854
No 426
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.43 E-value=3.7e-13 Score=134.83 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=46.4
Q ss_pred ecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC-----eEEEEEeeeccCcCeEEEEEEEcCCC
Q psy2776 522 VKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE-----TSTIAIYSVVRADTSTYTVTATNAAG 588 (803)
Q Consensus 522 ~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~-----~~~L~i~~v~~~dsG~Y~C~a~n~~g 588 (803)
.|+.+.|.|.+.|+ |.+ .+.|+|+|..+............+ .+.|.|......|.|.|+|.|.+..-
T Consensus 144 ~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 144 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 38899999999995 543 799999999875321111111111 24566666666789999999999854
No 427
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=117.37 Aligned_cols=89 Identities=20% Similarity=0.375 Sum_probs=78.6
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC----CeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----KKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~----~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.||.|...+....+.+|+++.|.|.+.|.| +.+.|+|||.++..+. ++.+..++....|.|.++ +.+|+|.|+|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C 84 (101)
T 2edk_A 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV-VQEDRGRYQV 84 (101)
T ss_dssp CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSC-CGGGCSBEEE
T ss_pred CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCC-ChhhCEEEEE
Confidence 478899988899999999999999999999 9999999999998777 668888888889999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEEe
Q psy2776 747 VATNELGSATHGARVTVDV 765 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~~ 765 (803)
.|.| .+.++.|.|..
T Consensus 85 ~a~n----~~~~~~l~V~~ 99 (101)
T 2edk_A 85 ITNG----GQCEAELIVEE 99 (101)
T ss_dssp ECSS----CEECCBEEEEC
T ss_pred EEcC----CcEEEEEEEeC
Confidence 9998 44567777754
No 428
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=110.81 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=77.6
Q ss_pred cceEEeecceeEEEEEEcCc-CCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGF-PRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~-p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|. |.+.+.|+|++..+..+.++.+....+...|.|.++..+|+|.|+|.|.|..|....++
T Consensus 9 ~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 88 (97)
T 2bk8_A 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA 88 (97)
T ss_dssp CCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred cCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEE
Confidence 36788999999999999997 88999999999999888888877767778999999999999999999999999999999
Q ss_pred EEEEee
Q psy2776 595 SLQVLG 600 (803)
Q Consensus 595 ~l~V~~ 600 (803)
.|.|.+
T Consensus 89 ~l~V~~ 94 (97)
T 2bk8_A 89 ELFVKG 94 (97)
T ss_dssp EEEETT
T ss_pred EEEEEe
Confidence 998864
No 429
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.42 E-value=4.9e-13 Score=112.44 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcC--eeccce-eEEEecCeeEEEEecCCCCcceEEEEEEEcCC
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDD--SLIKGR-NITYENNVARFTVVNCSESSEGRYTCKATNEA 220 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~--~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 220 (803)
+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+... .+........|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 81 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL 81 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCC
Confidence 567777778888999999999999999999999999999 777643 34444566889999999999999999999999
Q ss_pred cCeeeEEEEEEe
Q psy2776 221 GTAETSCTLLVQ 232 (803)
Q Consensus 221 g~~~~s~~l~V~ 232 (803)
|....++.|.|+
T Consensus 82 G~~~~~~~l~V~ 93 (93)
T 1wit_A 82 GEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEEEEEEEEC
T ss_pred CeEEEEEEEEEC
Confidence 988888888773
No 430
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=137.03 Aligned_cols=176 Identities=14% Similarity=0.209 Sum_probs=109.6
Q ss_pred cCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ec------cc----------e-eEEEe--cCeeEEEEecCCCCc
Q psy2776 150 PLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LI------KG----------R-NITYE--NNVARFTVVNCSESS 208 (803)
Q Consensus 150 ~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~------~~----------~-~~~~~--~~~~~L~i~~v~~~d 208 (803)
.+..+.+.+|++++|.|.+.+.+.+.+.|+|... .. .. . ++... .... |.|.+++.+|
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~D 85 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQ 85 (253)
T ss_dssp ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSS
T ss_pred CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhh
Confidence 3556788899999999999888888999998321 10 00 0 22221 1122 9999999999
Q ss_pred ceEEEEEEEcCCc---Ce---eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 209 EGRYTCKATNEAG---TA---ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 209 ~G~Y~C~a~n~~g---~~---~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
+|.|.|.+.+..+ .. .....|.|........
T Consensus 86 sG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~------------------------------------------- 122 (253)
T 3to4_D 86 GRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVF------------------------------------------- 122 (253)
T ss_dssp CEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCB-------------------------------------------
T ss_pred CeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCC-------------------------------------------
Confidence 9999999987654 11 1123555543210000
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCce-eeEEeecCeeccccceeEE---E-
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPDI-QVKWLKKGKEIKESARHII---T- 355 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~~-~i~W~~~g~~l~~~~~~~~---~- 355 (803)
.|. +....+....+..|+.++|.|.+ + .|.+ .+.|+++|.++..+..... .
T Consensus 123 --------------------~P~--v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~ 180 (253)
T 3to4_D 123 --------------------PPE--VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKE 180 (253)
T ss_dssp --------------------CCE--EEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEES
T ss_pred --------------------CCe--EEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccc
Confidence 000 00001111223347889999999 5 6665 8999999999875432211 1
Q ss_pred ----EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeee
Q psy2776 356 ----SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 356 ----~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~ 391 (803)
.++.. +.|.|.....+| .|.|+|.+.+..-...+.|
T Consensus 181 ~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~~~~~ 224 (253)
T 3to4_D 181 QPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEW 224 (253)
T ss_dssp STTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTTSCC
T ss_pred cccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCCCccc
Confidence 23333 467777777777 7799999999765555555
No 431
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.42 E-value=8.9e-13 Score=112.27 Aligned_cols=91 Identities=31% Similarity=0.476 Sum_probs=78.2
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce-eEE---EecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR-NIT---YENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~-~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... +.. ..++...|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 4677877888899999999999999999999999999999988643 222 235567899999999999999999999
Q ss_pred CCcCeeeEEEEEEee
Q psy2776 219 EAGTAETSCTLLVQG 233 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~ 233 (803)
..|....++.|.|..
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 84 IAGETSSHAFLLVQA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEec
Confidence 999998888888864
No 432
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=112.01 Aligned_cols=94 Identities=26% Similarity=0.391 Sum_probs=83.3
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+ +.|.+.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~--- 81 (103)
T 2dku_A 7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISAL-EKADSDTYTCD--- 81 (103)
T ss_dssp CCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESC-CTTTCSEEEEE---
T ss_pred CCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCC-CcccCEEEEEE---
Confidence 37888888889999999999999994 88999999999999999888998888888889999999 79999999998
Q ss_pred cCcceeeeEEEEEEeeccCC
Q psy2776 751 ELGSATHGARVTVDVEKVGR 770 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~~~~~p 770 (803)
+|..+..+.|.|...+..|
T Consensus 82 -~g~~~~~~~l~V~~~p~~p 100 (103)
T 2dku_A 82 -IGQAQSRAQLLVQGRRSGP 100 (103)
T ss_dssp -CSSCBCCEEEEEECSCCCC
T ss_pred -eCCceEEEEEEEeCccCCC
Confidence 7888889999997655433
No 433
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.42 E-value=4.2e-13 Score=121.40 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=74.2
Q ss_pred ccceEEeecceeEEEEEEcCcCCCeeEEeeCC----------------------------eee-cCCCcEEEEecCCeEE
Q psy2776 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNG----------------------------AEI-TDSKACRIFIDEETST 565 (803)
Q Consensus 515 ~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g----------------------------~~i-~~~~~~~~~~~~~~~~ 565 (803)
+..+.+.+|+++.|.|.+.|.|.|.+.|+|+| ..+ ....++.+...+..+.
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~s~ 104 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI 104 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCEEE
Confidence 34688999999999999999999999999999 555 2446667766666789
Q ss_pred EEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 566 IAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 566 L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 105 L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 105 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 9999999999999999999999999999999885
No 434
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.41 E-value=7.1e-12 Score=118.39 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=103.7
Q ss_pred ceEEeecceeEEEEEEcCcCCCe-eEEeeC-CeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPE-ISWMKN-GAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~-g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...|.+|+++.|+|.+.. +.|. +.|.-. ++.+.. ........|.|.+++. | |.|.|.+.+........+
T Consensus 8 ~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~------~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~ 78 (185)
T 1iam_A 8 KVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELL------LPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKT 78 (185)
T ss_dssp EEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEEC------SSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEEC
T ss_pred CcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEe------ccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEE
Confidence 466899999999999975 5554 777531 111110 0012336799999983 4 999999987756677788
Q ss_pred EEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCe
Q psy2776 595 SLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPL 674 (803)
Q Consensus 595 ~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~ 674 (803)
.|.|..+| ..
T Consensus 79 ~l~V~~~P----------------------------------------------------------------------~~ 88 (185)
T 1iam_A 79 FLTVYWTP----------------------------------------------------------------------ER 88 (185)
T ss_dssp EEEEEBCC----------------------------------------------------------------------SE
T ss_pred EEEEeCCC----------------------------------------------------------------------CC
Confidence 88887654 11
Q ss_pred eEeccceeEEecCCeEEEEEEEeec-CCC--ceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVKAS-PAP--SIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~g~-p~~--~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
+...+....+.+|+.++|.|.+.|. |.. .|.|+++++.+..... ..+..+.+|.+... ..+|...|+|+|.|.
T Consensus 89 v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~---~~~~~~~tl~~~~~-reD~g~~~sC~A~~~ 164 (185)
T 1iam_A 89 VELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVR-RDHHGAQFSCRTELD 164 (185)
T ss_dssp EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECC-SSCSSCEEEEEEEEE
T ss_pred CEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC---CCccccEEEEEece-eccCCCeEEEEEEec
Confidence 2222233458899999999999885 554 4899999998853210 11123346777664 444444999999999
Q ss_pred Ccce
Q psy2776 752 LGSA 755 (803)
Q Consensus 752 ~G~~ 755 (803)
++..
T Consensus 165 l~~~ 168 (185)
T 1iam_A 165 LRPQ 168 (185)
T ss_dssp CGGG
T ss_pred Cccc
Confidence 8843
No 435
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.41 E-value=9.3e-14 Score=123.61 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=81.8
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCc-eEEeeCCeeccC--CCCeEEE--eeCc--eEEEEEecCCCCCCc-e
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPS-IVWFRNNKPLLS--SPKKREI--FDGE--NIILELKEADSETDA-G 742 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~~~~l~~--~~~~~~~--~~~~--~~~L~i~~v~~~~D~-G 742 (803)
.+|.|.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+.. ..++.+. .... ...|.|.++ +.+|+ |
T Consensus 13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~~G 90 (122)
T 2cry_A 13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI-VRADFQT 90 (122)
T ss_dssp SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC-CHHHHHS
T ss_pred cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC-ChhhCCc
Confidence 3778877 7778899999999999999999997 999999999875 4566653 2222 668999999 78998 9
Q ss_pred eEEEEEEccCcceeeeEEEEEEeeccCCC
Q psy2776 743 DYKVVATNELGSATHGARVTVDVEKVGRP 771 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~pp 771 (803)
.|+|.|.|.+|.+...+.|.|..+....|
T Consensus 91 ~Y~C~a~N~~G~~~~~~~l~V~~~~~~~p 119 (122)
T 2cry_A 91 IYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119 (122)
T ss_dssp CEEEEEECSSCEEEEEECCCCSCSSCCCC
T ss_pred eEEEEEECCCCeEEEEEEEEECCCCCCCC
Confidence 99999999999999999998875444433
No 436
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=113.04 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=74.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+ .|.+.+.|+|+|..|..+.++.+...+....|.|.++..+|+|.|+|.|.|. ..+.++.
T Consensus 15 ~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~ 90 (100)
T 2yuz_A 15 TDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAK 90 (100)
T ss_dssp CCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEE
T ss_pred CceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEE
Confidence 46789999999999999 7899999999999999888988888777789999999999999999999998 5677888
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 91 L~V~~~P 97 (100)
T 2yuz_A 91 VHVISGP 97 (100)
T ss_dssp EEEECCS
T ss_pred EEEeCCC
Confidence 8888765
No 437
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=114.19 Aligned_cols=91 Identities=30% Similarity=0.459 Sum_probs=79.7
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccceeEEEecCeeEEEEecCCCCcceEEEEEEEcCCc
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRNITYENNVARFTVVNCSESSEGRYTCKATNEAG 221 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 221 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.............|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 88 (99)
T 2yr3_A 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88 (99)
T ss_dssp CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence 45678888888899999999999999999999999999999888765555666778999999999999999999999999
Q ss_pred CeeeEEEEEEe
Q psy2776 222 TAETSCTLLVQ 232 (803)
Q Consensus 222 ~~~~s~~l~V~ 232 (803)
....++.|.|+
T Consensus 89 ~~~~~~~l~V~ 99 (99)
T 2yr3_A 89 QVSCSAWVTVH 99 (99)
T ss_dssp EEEEECCEEEC
T ss_pred eEEEEEEEEEC
Confidence 88888777763
No 438
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.41 E-value=2.2e-12 Score=129.67 Aligned_cols=177 Identities=16% Similarity=0.233 Sum_probs=108.7
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--ecc----------------ceeEEEe---cCeeEEEEecCCCC
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--LIK----------------GRNITYE---NNVARFTVVNCSES 207 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~~~----------------~~~~~~~---~~~~~L~i~~v~~~ 207 (803)
..+..+.+.+|++++|.|.+.. +.+.+.|+|++. .+. ..++... .+..+|.|.+++.+
T Consensus 4 q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~ 82 (238)
T 1bec_A 4 QSPRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPS 82 (238)
T ss_dssp EECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGG
T ss_pred cCCCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcc
Confidence 3456678899999999999954 678899998641 100 1122221 24568999999999
Q ss_pred cceEEEEEEEcCCc---Ce--eeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeecccccee
Q psy2776 208 SEGRYTCKATNEAG---TA--ETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWL 282 (803)
Q Consensus 208 d~G~Y~C~a~n~~g---~~--~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (803)
|+|.|.|.+.|..+ .. .....|.|........+
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~------------------------------------------ 120 (238)
T 1bec_A 83 QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP------------------------------------------ 120 (238)
T ss_dssp GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBC------------------------------------------
T ss_pred cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCC------------------------------------------
Confidence 99999999998742 11 12245666543100000
Q ss_pred eccccccccceeeeeeccCCCccccccccCCceeeeccccceeEEEEe-c-CCc-eeeEEeecCeecccccee----EEE
Q psy2776 283 ARWTSDLESTAWFWWFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPD-IQVKWLKKGKEIKESARH----IIT 355 (803)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~-~~i~W~~~g~~l~~~~~~----~~~ 355 (803)
+.+....+....+..|+.+.|.|.+ + .|. +.+.|+++|.++..+... ...
T Consensus 121 -----------------------P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~ 177 (238)
T 1bec_A 121 -----------------------PKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKE 177 (238)
T ss_dssp -----------------------CEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEE
T ss_pred -----------------------CceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeC
Confidence 0011111222234469999999999 5 464 599999999998754322 223
Q ss_pred EcCce---eEEEEeecCCCC-CccEEEEEeccccceeeee
Q psy2776 356 SRGTQ---RKLVIKRVTQDD-ETDIGVLALNVKSVSKLKW 391 (803)
Q Consensus 356 ~~~~~---~~l~i~~~~~~d-~g~y~c~~~~~~~~~~~~~ 391 (803)
.++.. ..|.|......| .|.|+|.+.|......+.|
T Consensus 178 ~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~~~~ 217 (238)
T 1bec_A 178 SNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKW 217 (238)
T ss_dssp ETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTTCCC
T ss_pred CCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCCcEe
Confidence 34432 234444444434 6789999999765444444
No 439
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.41 E-value=1.1e-12 Score=113.70 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCC---CceEEeeCCeecc---CCCCeEEEee------CceEEEEEecCCCCC
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPA---PSIVWFRNNKPLL---SSPKKREIFD------GENIILELKEADSET 739 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~~~~l~---~~~~~~~~~~------~~~~~L~i~~v~~~~ 739 (803)
.|.|+..+....+.+|++++|.|.+.|.|. |.+.|+|++.... ...++.+... .....|.|.++ +.+
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~ 82 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA-QPA 82 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSC-CGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecC-CCc
Confidence 577888888899999999999999999998 9999999873221 1234443321 12578999999 799
Q ss_pred CceeEEEEEEccCcceeeeEEEEEE
Q psy2776 740 DAGDYKVVATNELGSATHGARVTVD 764 (803)
Q Consensus 740 D~G~Y~C~a~N~~G~~~~~~~l~V~ 764 (803)
|+|.|+|.|.|.+|.+++++.|.|.
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999984
No 440
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.40 E-value=2e-12 Score=110.00 Aligned_cols=85 Identities=31% Similarity=0.392 Sum_probs=78.0
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 93 (99)
T 3puc_A 14 QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93 (99)
T ss_dssp CCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 35788999999999999999999999999999998888888887777789999999999999999999999999999999
Q ss_pred EEEee
Q psy2776 596 LQVLG 600 (803)
Q Consensus 596 l~V~~ 600 (803)
|.|..
T Consensus 94 l~V~~ 98 (99)
T 3puc_A 94 LTIKA 98 (99)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98864
No 441
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.40 E-value=2.9e-12 Score=130.05 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=53.4
Q ss_pred eeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe--e---c-------------cceeEEEe---cCeeEEEEecCC
Q psy2776 147 IQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS--L---I-------------KGRNITYE---NNVARFTVVNCS 205 (803)
Q Consensus 147 i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~--~---~-------------~~~~~~~~---~~~~~L~i~~v~ 205 (803)
+...+..+.+.+|++++|.|.+. .+.+.+.|+|... . + ...++... .+...|.|.+++
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 84 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 84 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC
Confidence 44556778899999999999995 4578899998531 1 0 01233332 234689999999
Q ss_pred CCcceEEEEEEEcC
Q psy2776 206 ESSEGRYTCKATNE 219 (803)
Q Consensus 206 ~~d~G~Y~C~a~n~ 219 (803)
.+|+|.|.|.+.|.
T Consensus 85 ~~D~G~Y~C~~~~~ 98 (252)
T 1oga_E 85 KNPTAFYLCASSSR 98 (252)
T ss_dssp SCCCEEEEEEEESS
T ss_pred hhhCEEEEEEEecC
Confidence 99999999999986
No 442
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=109.51 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=78.5
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
.|.|...+....+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a--- 82 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV-GPADQGSYAVIA--- 82 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSC-CTTCCSEEEEEE---
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCC-CcccCEEEEEEE---
Confidence 5778888888999999999999999 78999999999999999888999888888889999999 799999999999
Q ss_pred CcceeeeEEEEEE
Q psy2776 752 LGSATHGARVTVD 764 (803)
Q Consensus 752 ~G~~~~~~~l~V~ 764 (803)
|..+.++.|.|.
T Consensus 83 -g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 -GSSKVKFDLKVI 94 (95)
T ss_dssp -TTEEEEEEEEEE
T ss_pred -CCceEEEEEEEe
Confidence 667778888874
No 443
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.40 E-value=1.2e-12 Score=112.38 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=69.4
Q ss_pred eecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE--ec---CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 521 SVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF--ID---EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 521 ~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~--~~---~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
..|+.+.|.|.+.|.|.|.++|+|+|..+..+.+.... .. ...++|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 35788999999999999999999999999887653222 11 12356999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|...|
T Consensus 94 l~V~~~P 100 (103)
T 1wwb_X 94 AHFMGWP 100 (103)
T ss_dssp ECCSCCC
T ss_pred EEECCCC
Confidence 9998765
No 444
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.40 E-value=1.3e-12 Score=112.98 Aligned_cols=87 Identities=21% Similarity=0.337 Sum_probs=77.9
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 21 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 100 (107)
T 3irg_B 21 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAA 100 (107)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEEEEcCCCcEEEEEE
Confidence 46788999999999999999999999999999998888877777667779999999999999999999999999999999
Q ss_pred EEEeeeE
Q psy2776 596 LQVLGYI 602 (803)
Q Consensus 596 l~V~~~p 602 (803)
|.|..+|
T Consensus 101 l~V~~~P 107 (107)
T 3irg_B 101 VTVLEPP 107 (107)
T ss_dssp EEEEC--
T ss_pred EEEEcCC
Confidence 9998764
No 445
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.40 E-value=3.2e-12 Score=111.86 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=81.1
Q ss_pred CCCCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 667 GSPGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 667 ~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
.....||.|...+....+.+|+++.|.|.+.+. |.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|
T Consensus 14 ~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 90 (113)
T 2edh_A 14 TVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGL-VAEDAGEYLC 90 (113)
T ss_dssp CCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSC-CSTTCEEEEE
T ss_pred EEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCC-ChhhCEEEEE
Confidence 333446889888888999999999999999775 7899999999999889999988888889999999 7999999999
Q ss_pred EEEccCcceeeeEEEEEEe
Q psy2776 747 VATNELGSATHGARVTVDV 765 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V~~ 765 (803)
.| |..+.++.|.|..
T Consensus 91 ~a----~~~~~~~~l~V~~ 105 (113)
T 2edh_A 91 MC----GKERTSAMLTVRA 105 (113)
T ss_dssp EE----TTEEEEEEEEECC
T ss_pred Ee----CCCCEEEEEEEeC
Confidence 99 7788889899863
No 446
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.39 E-value=1.1e-12 Score=133.74 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=105.6
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--ee---e-------------cCCCcEEEEec--CCeEEEEEeeeccC
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--AE---I-------------TDSKACRIFID--EETSTIAIYSVVRA 574 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~~---i-------------~~~~~~~~~~~--~~~~~L~i~~v~~~ 574 (803)
...+.+|++++|.|.+.+.+ ...+.|+|.. .. + ....++.+..+ .....|.|.+++.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 88 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTD 88 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHH
Confidence 36688999999999997643 4679998742 11 1 01235554432 34578999999999
Q ss_pred cCeEEEEEEEcCCCC--------eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEecC
Q psy2776 575 DTSTYTVTATNAAGS--------TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAENS 646 (803)
Q Consensus 575 dsG~Y~C~a~n~~g~--------~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n~ 646 (803)
|+|.|.|.+.+..+. ......|.|..
T Consensus 89 DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~---------------------------------------------- 122 (263)
T 3iu4_H 89 DTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSA---------------------------------------------- 122 (263)
T ss_dssp GCEEEEEEEEECC---CEEEEEEECCCEEEEECS----------------------------------------------
T ss_pred HCEEEEEEEEeCCCCccccccceeCCceEEEEec----------------------------------------------
Confidence 999999999875311 01112344421
Q ss_pred CCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-CC-CceEEeeCCeeccCCC---CeEE
Q psy2776 647 VGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-PA-PSIVWFRNNKPLLSSP---KKRE 721 (803)
Q Consensus 647 ~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p~-~~v~W~~~~~~l~~~~---~~~~ 721 (803)
....+|.+........+..|+.++|.|.+.|. |. +.+.| ++..+.... ....
T Consensus 123 ---------------------~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~ 179 (263)
T 3iu4_H 123 ---------------------ASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVL 179 (263)
T ss_dssp ---------------------SCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEE
T ss_pred ---------------------ccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--CCcccCCceeecCceE
Confidence 11225555533333445689999999999886 43 57999 444332210 0111
Q ss_pred EeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEE
Q psy2776 722 IFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVT 762 (803)
Q Consensus 722 ~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 762 (803)
..++. .+.|.|... ..+| |.|+|.|.|..+.......|.
T Consensus 180 ~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~~~ 221 (263)
T 3iu4_H 180 QSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKKVE 221 (263)
T ss_dssp CTTSCEEEEEEEEEETT-HHHH-CCCEEEEEEGGGTEEEEEECC
T ss_pred CCCCCEEEEEEEEECHh-HcCC-CEEEEEEEECCCCcceeEEEc
Confidence 11121 246888887 5567 999999999998865544444
No 447
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.39 E-value=2.8e-12 Score=130.50 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=108.7
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--e---ee---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--A---EI---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~---~i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+.. ...+.|+|.. . .+ . ...|+.+..+ .+...|.|.+++.
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 111 (256)
T 3sob_H 32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA 111 (256)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence 35688999999999997633 4679998742 1 11 0 0134544332 2456799999999
Q ss_pred CcCeEEEEEEEcCCC-------C----eEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEE
Q psy2776 574 ADTSTYTVTATNAAG-------S----TSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVF 642 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g-------~----~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (803)
+|+|.|.|.+.+..+ . ......|.|...
T Consensus 112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------- 150 (256)
T 3sob_H 112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSA----------------------------------------- 150 (256)
T ss_dssp GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSS-----------------------------------------
T ss_pred ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecC-----------------------------------------
Confidence 999999999987532 1 111223444221
Q ss_pred EecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCCC--
Q psy2776 643 AENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSPK-- 718 (803)
Q Consensus 643 a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~~-- 718 (803)
+..+|.+........+.+|+.++|.|.+.+. | .+.+.| ++..+..+..
T Consensus 151 --------------------------~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~ 202 (256)
T 3sob_H 151 --------------------------STKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTF 202 (256)
T ss_dssp --------------------------CCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEEC
T ss_pred --------------------------CCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeC
Confidence 1225555543334456789999999999885 5 346999 5544432110
Q ss_pred -eEEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 719 -KREIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 719 -~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
.....++. .+.|.|... ..+| |.|+|.|.|..+.......|.+
T Consensus 203 ~~~~~~~g~~~~~s~L~i~~~-~~~d-~~ytC~v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 203 PAVLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKKVEP 249 (256)
T ss_dssp CCEECTTSCEEEEEEEEEEGG-GTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CceeCCCCCEEEEEEEEECHH-HcCC-ceEEEEEEeCCCCcceEEEecc
Confidence 11111121 346889988 6788 9999999999988776665554
No 448
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.39 E-value=2.5e-13 Score=115.99 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=73.2
Q ss_pred CCeeEecc----ceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeE-EEeeCceEEEEEecCCCCCCceeEEE
Q psy2776 672 APLFIERF----EEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKR-EIFDGENIILELKEADSETDAGDYKV 746 (803)
Q Consensus 672 ~p~~~~~~----~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C 746 (803)
+|.|...+ ....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++. .........|.|.++ +.+|+|.|+|
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C 82 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV-VPSDKGNYTC 82 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSC-CGGGCEEEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccC-CcCCCEEEEE
Confidence 56666544 35678899999999999999999999999999987654421 122233347999999 7999999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy2776 747 VATNELGSATHGARVTV 763 (803)
Q Consensus 747 ~a~N~~G~~~~~~~l~V 763 (803)
.|.|..|..+..+.|.|
T Consensus 83 ~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 83 VVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEEE
Confidence 99999999998888876
No 449
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.39 E-value=5.4e-12 Score=125.67 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=107.7
Q ss_pred ceEEeecceeEEEEEEcCc--CCCeeEEeeCC--e---ee---c-----------CCCcEEEEec--CCeEEEEEeeecc
Q psy2776 517 SQRLSVKSQWKVEVKYFGF--PRPEISWMKNG--A---EI---T-----------DSKACRIFID--EETSTIAIYSVVR 573 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~--p~~~v~W~~~g--~---~i---~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 573 (803)
...+.+|++++|.|.+.+. +...+.|+|.. . .+ . ...|+.+..+ .....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 4668899999999999763 34689999742 1 11 0 0134444332 2457899999999
Q ss_pred CcCeEEEEEEEcCCCC-------e--EEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCceeEEEEEEe
Q psy2776 574 ADTSTYTVTATNAAGS-------T--SLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSEYYFQVFAE 644 (803)
Q Consensus 574 ~dsG~Y~C~a~n~~g~-------~--s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 644 (803)
+|+|.|.|.+.+..+. . .....|.|..
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~-------------------------------------------- 124 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS-------------------------------------------- 124 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECC--------------------------------------------
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeecc--------------------------------------------
Confidence 9999999999764210 0 0111233321
Q ss_pred cCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeEEecCCeEEEEEEEeec-C-CCceEEeeCCeeccCCC---Ce
Q psy2776 645 NSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKTVKEKGTIRLMAKVKAS-P-APSIVWFRNNKPLLSSP---KK 719 (803)
Q Consensus 645 n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~-p-~~~v~W~~~~~~l~~~~---~~ 719 (803)
....+|.+........+.+|+.++|.|.+.|. | .+.+.| ++..+..+. ..
T Consensus 125 -----------------------~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~ 179 (226)
T 3mlr_H 125 -----------------------GTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPA 179 (226)
T ss_dssp -----------------------CCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCC
T ss_pred -----------------------CCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCc
Confidence 11225666544444455689999999999885 4 357999 443332110 00
Q ss_pred EEEeeCc---eEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 720 REIFDGE---NIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 720 ~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
....++. .+.|.|... ..+| |.|+|.|.|..+.......
T Consensus 180 ~~~~~g~~~~~s~L~i~~~-~~~~-~~ytC~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 180 VLQSSGLYSLSSVVTVPSS-SLGT-QTYICNVNHKPSNTKVDKK 221 (226)
T ss_dssp EECTTSCEEEEEEEEEEGG-GTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred EECCCCCEEEEEEEEECHh-HcCC-CeEEEEEEECCCCcCeEEE
Confidence 1111121 346889988 5678 9999999999988654443
No 450
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.39 E-value=2.6e-12 Score=107.58 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=70.2
Q ss_pred ccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 515 LKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 515 ~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
+....+.+|+.+.|.|.+.+ |++.+.|+|+|..|..+.++.+..++....|.|.++..+|+|.|+|.|.|. ..++
T Consensus 12 ~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa 86 (93)
T 1waa_A 12 LYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAA 86 (93)
T ss_dssp CCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEE
T ss_pred CcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEE
Confidence 34688999999999999986 557899999999999888888887777789999999999999999999874 4677
Q ss_pred EEEEee
Q psy2776 595 SLQVLG 600 (803)
Q Consensus 595 ~l~V~~ 600 (803)
.|.|..
T Consensus 87 ~L~V~~ 92 (93)
T 1waa_A 87 NLKVKE 92 (93)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 777754
No 451
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.38 E-value=1.3e-12 Score=112.22 Aligned_cols=89 Identities=25% Similarity=0.357 Sum_probs=81.0
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|+++.|.|.+.|.|.+ +.|++++..+..+.++.+..++....|.|.++ +.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~--- 81 (103)
T 2e7b_A 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNL-RPQDSGRYSCS--- 81 (103)
T ss_dssp CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSC-CTTTCCCEEEE---
T ss_pred CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccC-CcccCEEEEEE---
Confidence 47888888888999999999999999999999 99999999998888999988888899999999 79999999998
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
+|..+..+.|.|..
T Consensus 82 -~g~~~~~~~l~V~~ 95 (103)
T 2e7b_A 82 -FGDQTTSATLTVTA 95 (103)
T ss_dssp -CSSCBCCBCEEEEC
T ss_pred -ECCcEEEEEEEEEe
Confidence 67788888888864
No 452
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.38 E-value=1.3e-12 Score=114.69 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=70.9
Q ss_pred ecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC-------CeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 522 VKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE-------ETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 522 ~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~-------~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
.+..+.|.|.+.|+|.|.++|+|||.+|..+.+..+.... ..++|.|.+++..|+|.|+|+|.|..|....++
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~ 93 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence 5678999999999999999999999999987765544321 257899999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|...|
T Consensus 94 ~l~v~~~P 101 (126)
T 1he7_A 94 MAAFMDNP 101 (126)
T ss_dssp EECCCSCT
T ss_pred EEEEEcCC
Confidence 99998876
No 453
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.38 E-value=2.6e-12 Score=128.32 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=49.1
Q ss_pred EEeecceeEEEEEEcCc-CC-CeeEEee-CCeeecCCCcEEEEecCC----eEEEEEeeeccCcCeEEEEEEEcCCCCe
Q psy2776 519 RLSVKSQWKVEVKYFGF-PR-PEISWMK-NGAEITDSKACRIFIDEE----TSTIAIYSVVRADTSTYTVTATNAAGST 590 (803)
Q Consensus 519 ~v~~g~~v~l~C~~~g~-p~-~~v~W~~-~g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~ 590 (803)
.+..|+.+.|.|.+.|. |. +.+.|++ +|..+..+....+...++ .+.|.|.+... | |.|+|.|.|..+..
T Consensus 141 ~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 141 ETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp HHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred hhccCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 34568999999999987 75 5999999 887775432111111112 25788887775 4 99999999987653
No 454
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=110.74 Aligned_cols=85 Identities=21% Similarity=0.443 Sum_probs=73.8
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEE-ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIF-IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~-~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+..+. ...+...|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 14 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 93 (100)
T 2kdg_A 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93 (100)
T ss_dssp CEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEE
Confidence 577899999999999999999999999999999877544333 3444579999999999999999999999999999999
Q ss_pred EEEeee
Q psy2776 596 LQVLGY 601 (803)
Q Consensus 596 l~V~~~ 601 (803)
|.|...
T Consensus 94 l~V~~~ 99 (100)
T 2kdg_A 94 LDVLAK 99 (100)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 998764
No 455
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=110.85 Aligned_cols=92 Identities=26% Similarity=0.447 Sum_probs=78.7
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++... ...+|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~ 84 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ-EQGTLQIKNLRISDTGTYTCVATSS 84 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC-TTCCEEEESCCTTTCCEEEEEEECS
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc-CCCEEEEccCCcccCEEEEEEEEcC
Confidence 5678888888889999999999999999999999999999987762 233332 3357999999999999999999999
Q ss_pred CcCeeeEEEEEEeee
Q psy2776 220 AGTAETSCTLLVQGK 234 (803)
Q Consensus 220 ~g~~~~s~~l~V~~~ 234 (803)
.|....++.|.|.+.
T Consensus 85 ~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 85 SGETSWSAVLDVTES 99 (100)
T ss_dssp SCCCBCCEEEEEESC
T ss_pred CCCEEEEEEEEEecC
Confidence 999988899988764
No 456
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.37 E-value=2.3e-12 Score=113.27 Aligned_cols=95 Identities=23% Similarity=0.396 Sum_probs=80.9
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEec---CeeEEEEecCCCCcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYEN---NVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.... +..+|.|.+++.+|+|.|+|.|
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence 4578888889999999999999999999999999999999988763 2333322 2348999999999999999999
Q ss_pred EcCCcCeeeEEEEEEeeeec
Q psy2776 217 TNEAGTAETSCTLLVQGKEI 236 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~ 236 (803)
.|..|....++.|.|...|.
T Consensus 93 ~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 93 VNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp EETTEEEEEEEEEEEECCSC
T ss_pred EcCCCeEEEEEEEEEeCCCC
Confidence 99999998899999987753
No 457
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=109.16 Aligned_cols=91 Identities=25% Similarity=0.492 Sum_probs=77.0
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccce--eEE--EecCeeEEEEecCCCCcceEEEEEEEc
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGR--NIT--YENNVARFTVVNCSESSEGRYTCKATN 218 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~--~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n 218 (803)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+. ..+...+|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 4677777788889999999999999999999999999999887643 222 233445899999999999999999999
Q ss_pred CCcCeeeEEEEEEee
Q psy2776 219 EAGTAETSCTLLVQG 233 (803)
Q Consensus 219 ~~g~~~~s~~l~V~~ 233 (803)
..|....++.|.|.+
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 EYGARQCEARLEVRG 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCceeEEEEEEEEC
Confidence 999998888888864
No 458
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.36 E-value=1.2e-12 Score=113.02 Aligned_cols=84 Identities=21% Similarity=0.388 Sum_probs=77.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 22 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 101 (106)
T 1nct_A 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT 101 (106)
T ss_dssp CCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEE
T ss_pred CCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEE
Confidence 46788999999999999999999999999999998888888877777889999999999999999999999999999999
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 102 l~V~ 105 (106)
T 1nct_A 102 LTIQ 105 (106)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9885
No 459
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.36 E-value=3.9e-12 Score=109.16 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=77.4
Q ss_pred CCCCeeEeccce-eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCC-CCeEEEeeCceEEEEEecCCCCCCceeEEEE
Q psy2776 670 GQAPLFIERFEE-KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSS-PKKREIFDGENIILELKEADSETDAGDYKVV 747 (803)
Q Consensus 670 ~~~p~~~~~~~~-~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~ 747 (803)
..+|.|+..+.. ..+.+|+++.|.|.+ +.|.+.+.|+|+|..+..+ .++.+..++....|.|.++ +.+|+|.|+|.
T Consensus 13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~ 90 (104)
T 1pd6_A 13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQC-SLADDAAYQCV 90 (104)
T ss_dssp STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSC-SSSSCEEEEEE
T ss_pred cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCC-CcccCEEEEEE
Confidence 458888888877 789999999999999 7899999999999999887 7888888888889999999 79999999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy2776 748 ATNELGSATHGARVTVD 764 (803)
Q Consensus 748 a~N~~G~~~~~~~l~V~ 764 (803)
|.| ...++.|.|+
T Consensus 91 a~~----~~~~~~l~V~ 103 (104)
T 1pd6_A 91 VGG----EKCSTELFVK 103 (104)
T ss_dssp ETT----EEECCEEEEE
T ss_pred ECC----CcEEEEEEEe
Confidence 944 5566777774
No 460
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.36 E-value=9.7e-13 Score=114.09 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=68.3
Q ss_pred eeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCc
Q psy2776 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRAD 575 (803)
Q Consensus 496 ~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~d 575 (803)
.+.+..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+....+..+. .....|.|.++..+|
T Consensus 4 ~v~~~~~P~~~~~------~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D 75 (108)
T 3kvq_A 4 TVLERVAPTITGN------LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKED 75 (108)
T ss_dssp -------CCCBSC------CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE--TTTTEEEECSCCGGG
T ss_pred eECccCCCceecC------CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe--CCCcEEEEeecCccc
Confidence 4445556654322 23678899999999999999999999999999988776655443 345689999999999
Q ss_pred CeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 576 TSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 576 sG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
+|.|+|.|.|..|....++.|.|..+|
T Consensus 76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 76 EGLYTCQACSVLGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp CEEEEEEEC----CEEEEEEEEEEC--
T ss_pred CEEEEEEEEeCCCceEEEEEEEEeCCC
Confidence 999999999999999999999998765
No 461
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.36 E-value=4.8e-12 Score=127.23 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=84.0
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCcee--------e-eeecccCCCCceeEEeeeccCcccCCchhhhhccccccccc
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGT--------A-ETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSY 490 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~--------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (803)
.+...|+|.+++.+|+|.|.|.+.+..+. . ....
T Consensus 83 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~------------------------------------- 125 (239)
T 3tv3_H 83 KNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLW------------------------------------- 125 (239)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEE-------------------------------------
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeee-------------------------------------
Confidence 45678999999999999999999865321 0 0000
Q ss_pred ccceeeeccC-CCCCCccceeeeccccceEEeecceeEEEEEEcCc-CCC-eeEEeeCCeeecCCCcEEEEecCC----e
Q psy2776 491 KTRTTNLQIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-PRP-EISWMKNGAEITDSKACRIFIDEE----T 563 (803)
Q Consensus 491 ~~~~~~l~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p~~-~v~W~~~g~~i~~~~~~~~~~~~~----~ 563 (803)
.....|.|. .++..|.+..... ...+..|+.+.|.|.+.+. |.+ .+.|+++|..+...........++ .
T Consensus 126 -~~~t~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~ 201 (239)
T 3tv3_H 126 -GRGTLVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS 201 (239)
T ss_dssp -CCCEEEEECCCCCBCCEEEEECC---CCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEE
T ss_pred -CCCcEEeeccCCCcCCEEEEECC---ChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEE
Confidence 002233343 2333333322111 2234569999999999885 434 578999986432111001111111 2
Q ss_pred EEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 564 STIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 564 ~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
+.|.|.+....| |.|+|.|.|..+.......|.+.
T Consensus 202 s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 236 (239)
T 3tv3_H 202 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 236 (239)
T ss_dssp EEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence 578899988888 99999999998877776666553
No 462
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=6.5e-12 Score=108.28 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC----------CeEEEeeCceEEEEEecCCCCCCc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP----------KKREIFDGENIILELKEADSETDA 741 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~----------~~~~~~~~~~~~L~i~~v~~~~D~ 741 (803)
+|.|...+.+..+.+|+++.|.|.+.+ .|.+.|+|||.+|..+. ++.+..++....|.|.++ +.+|+
T Consensus 8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v-~~~D~ 84 (112)
T 2e6q_A 8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAV-KHQDS 84 (112)
T ss_dssp CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESC-CSTTC
T ss_pred CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCC-CHHHC
Confidence 688999999999999999999999987 77899999999999887 888888888889999999 79999
Q ss_pred eeEEEEEEccCcceeeeEEEEEEe
Q psy2776 742 GDYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 742 G~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
|.|+|...+ ....++.|.|..
T Consensus 85 G~Y~~~~~~---~~~ssA~L~V~~ 105 (112)
T 2e6q_A 85 GALVGFSCP---GVQDSAALTIQE 105 (112)
T ss_dssp SEEEEEEET---TEEEEEEEEEEC
T ss_pred ccEEEEEEC---CeeEEEEEEEeC
Confidence 999774443 345688999964
No 463
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.35 E-value=6.2e-12 Score=107.13 Aligned_cols=84 Identities=23% Similarity=0.390 Sum_probs=74.9
Q ss_pred ceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC--CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD--SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~--~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
...+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. ..++.+.......+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 14 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 93 (100)
T 3irg_A 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV 93 (100)
T ss_dssp EEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEEEEeCCCcEEEEE
Confidence 57789999999999999999999999999998874 3567777666778999999999999999999999999999999
Q ss_pred EEEEee
Q psy2776 595 SLQVLG 600 (803)
Q Consensus 595 ~l~V~~ 600 (803)
.|.|..
T Consensus 94 ~l~V~~ 99 (100)
T 3irg_A 94 NIHIRS 99 (100)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 998854
No 464
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.35 E-value=8.7e-12 Score=124.74 Aligned_cols=138 Identities=13% Similarity=0.159 Sum_probs=81.4
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCceeee----eecccCCCCceeEEeeeccCcccCCchhhhhccccccccccccee
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAGTAE----TRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (803)
.+...|+|.+++.+|+|.|.|.+.+..+... ... + ...
T Consensus 80 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~---~-----------------------------------~~~ 121 (232)
T 3qhz_H 80 KSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLW---G-----------------------------------RGT 121 (232)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEE---C-----------------------------------CCE
T ss_pred CCEEEEEECcCChhhCEEEEEEEeeccCccccccceee---C-----------------------------------CCe
Confidence 3567899999999999999999987632110 000 0 022
Q ss_pred eeccC-CCCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcEEEEecCC----eEEEEE
Q psy2776 496 NLQIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKACRIFIDEE----TSTIAI 568 (803)
Q Consensus 496 ~l~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~~~~~~~~----~~~L~i 568 (803)
.|.|. .++..|.+..... ...+..|+.+.|.|.+.+.++ ..+.|+++|..+...........++ .+.|.|
T Consensus 122 ~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i 198 (232)
T 3qhz_H 122 LVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTV 198 (232)
T ss_dssp EEEECSSCCBCCEEEEECC----------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEecc---cccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEE
Confidence 33333 2222332221111 234567999999999998654 3577999986432110000111111 257889
Q ss_pred eeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 569 YSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 569 ~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
.+....| |.|+|.|.|..+.......|.+.
T Consensus 199 ~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 199 PSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp EGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred chhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 9998889 99999999998887777766553
No 465
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=114.58 Aligned_cols=94 Identities=26% Similarity=0.431 Sum_probs=73.5
Q ss_pred CCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCC-----CeEEEeeCceEEEEEe--cCCCCCCce
Q psy2776 670 GQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSP-----KKREIFDGENIILELK--EADSETDAG 742 (803)
Q Consensus 670 ~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~-----~~~~~~~~~~~~L~i~--~v~~~~D~G 742 (803)
..+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.... +.....++....+.|. ++ +.+|+|
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v-~~~D~G 85 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRK-SRPDEG 85 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTT-BCSSCE
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCC-CcCcCE
Confidence 348899988888999999999999999999999999999999987543 2233334443343333 66 689999
Q ss_pred eEEEEEEccCcce-eeeEEEEEE
Q psy2776 743 DYKVVATNELGSA-THGARVTVD 764 (803)
Q Consensus 743 ~Y~C~a~N~~G~~-~~~~~l~V~ 764 (803)
.|+|.|.|.+|.. +..+.|.|.
T Consensus 86 ~Y~C~a~N~~G~~~s~~~~l~~~ 108 (117)
T 2v9t_A 86 VYVCVARNYLGEAVSHDASLEVA 108 (117)
T ss_dssp EEEEEEEETTEEEECCCEEEEEC
T ss_pred EEEEEEEeCccceEeeeEEEEhh
Confidence 9999999999998 455666664
No 466
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.34 E-value=2.8e-10 Score=118.80 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=57.1
Q ss_pred ccCcCeeeecCCcEEEEEEECcc-------CCCeeEEEEcCeeccceeEEE-ecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGV-------PTPDIKWYKDDSLIKGRNITY-ENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~-------p~p~i~W~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
..|.+..+..|+++.|.|.+.+. |.|.|.|++++..+...++.. .+....|.|.++...| |.|+|.|.+.
T Consensus 9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~ 86 (303)
T 1i1r_A 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF 86 (303)
T ss_dssp EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC
Confidence 34677889999999999999864 778999999999887554333 3345689999999885 9999999874
No 467
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=113.87 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=78.6
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEE-eeCceEEEEEecCCCCCCceeEEEEEE
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREI-FDGENIILELKEADSETDAGDYKVVAT 749 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~-~~~~~~~L~i~~v~~~~D~G~Y~C~a~ 749 (803)
.++.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.++.+. .++....|.|.++ +.+|+|.|+|.
T Consensus 12 ~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~-- 88 (115)
T 2cr6_A 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFE-- 88 (115)
T ss_dssp SCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSC-CTTTCEEEEEE--
T ss_pred CCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCC-ChhhCEEEEEE--
Confidence 4678888888999999999999999999999999999999999888877665 3466678999999 79999999999
Q ss_pred ccCcceeeeEEEEEEe
Q psy2776 750 NELGSATHGARVTVDV 765 (803)
Q Consensus 750 N~~G~~~~~~~l~V~~ 765 (803)
+|....++.|.|..
T Consensus 89 --~g~~~~~~~L~V~~ 102 (115)
T 2cr6_A 89 --AGDQRASAALRVTE 102 (115)
T ss_dssp --ETTEECCEEEEEEC
T ss_pred --ECCeeEEEEEEEEC
Confidence 57778888889863
No 468
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-12 Score=106.62 Aligned_cols=76 Identities=9% Similarity=0.169 Sum_probs=65.4
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+.+|+.+.|.|.+.+ |.+.++|+|||..|..+.++.+..++...+|.|.++..+|+|.|+|.|.|. +.++.|.
T Consensus 16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~lt 90 (91)
T 2lvc_A 16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVT 90 (91)
T ss_dssp EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEE
T ss_pred EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEE
Confidence 34567999999999966 889999999999999999999888888889999999999999999999664 5556655
Q ss_pred E
Q psy2776 598 V 598 (803)
Q Consensus 598 V 598 (803)
|
T Consensus 91 V 91 (91)
T 2lvc_A 91 I 91 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 469
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.33 E-value=6e-12 Score=105.20 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEcc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNE 751 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~ 751 (803)
++.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....+ ..|.|.++ +.+|+|.|+|.|.|.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v-~~~d~G~Y~C~a~n~ 72 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYV-DLEHQGTYWCHVYND 72 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------SEEEESSC-CGGGCEEEEEEEECS
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------CeEEECCC-CHHhCEEEEEEEEcC
Confidence 56777788888999999999999999999999999999998865532 37999999 789999999999999
Q ss_pred Cccee-eeEEEEE
Q psy2776 752 LGSAT-HGARVTV 763 (803)
Q Consensus 752 ~G~~~-~~~~l~V 763 (803)
.|... ..+.|.|
T Consensus 73 ~g~~~s~~~~l~V 85 (91)
T 3bfo_A 73 RDSQDSKKVEIII 85 (91)
T ss_dssp SCEEECCCEEEEE
T ss_pred CCCEEeeeEEEEE
Confidence 99754 5566666
No 470
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.32 E-value=6.2e-12 Score=108.95 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=77.8
Q ss_pred CCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEc
Q psy2776 671 QAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATN 750 (803)
Q Consensus 671 ~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N 750 (803)
.+|.|...+....+.+|++++|.|.+.+. |.+.|+|++..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n 83 (108)
T 2dm7_A 7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDL-SVADAGEYSCMCGQ 83 (108)
T ss_dssp CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSC-CTTTCSEEEEEETT
T ss_pred CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCC-CcccCEEEEEEEcC
Confidence 48888888888999999999999999765 6899999999999888999888888899999999 79999999999965
Q ss_pred cCcceeeeEEEEEEe
Q psy2776 751 ELGSATHGARVTVDV 765 (803)
Q Consensus 751 ~~G~~~~~~~l~V~~ 765 (803)
....+.|.|..
T Consensus 84 ----~~~~~~l~V~~ 94 (108)
T 2dm7_A 84 ----ERTSATLTVRA 94 (108)
T ss_dssp ----EEEEEECEEEC
T ss_pred ----CEEEEEEEEec
Confidence 56777788864
No 471
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.32 E-value=4.3e-12 Score=111.95 Aligned_cols=98 Identities=18% Similarity=0.350 Sum_probs=76.8
Q ss_pred eeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecC----CeEEEEEeee
Q psy2776 496 NLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDE----ETSTIAIYSV 571 (803)
Q Consensus 496 ~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~----~~~~L~i~~v 571 (803)
.|.|..||.+.... ... ..+...|.|.+.|.|.|.+.|+|+|..+..+.+..+.... ..+.|.|.++
T Consensus 2 ~L~V~~pP~i~~~~-------~~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~ 72 (118)
T 1wwc_A 2 ALTVYYPPRVVSLE-------EPE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 72 (118)
T ss_dssp --CCCCCCCCCCCC-------CCC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESC
T ss_pred EEEEecCCceeccC-------CCe--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCC
Confidence 46677777753321 111 2256788999999999999999999999887665554322 3578999999
Q ss_pred ccCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 572 VRADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 572 ~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 73 ~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 73 THYNNGNYTLIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred ChhcCEEEEEEEECCCCeEeeEEEEEEccCC
Confidence 9999999999999999999999999988776
No 472
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.8e-12 Score=112.30 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=72.1
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecC-CCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITD-SKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~-~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|+|..+.. ..++.+.. ..+|.|.++..+|+|.|+|.|.|..|....++
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 92 (118)
T 2eo9_A 16 VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE---NGVLQIRYAKLGDTGRYTCIASTPSGEATWSA 92 (118)
T ss_dssp CCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE---TTEEEEESCCGGGCCCEEEEEECSSCEEEEEC
T ss_pred CCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc---CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEE
Confidence 357789999999999999999999999999998865 34554433 23899999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..++
T Consensus 93 ~l~V~~~~ 100 (118)
T 2eo9_A 93 YIEVQEFG 100 (118)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99987754
No 473
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.1e-12 Score=109.41 Aligned_cols=95 Identities=27% Similarity=0.427 Sum_probs=80.1
Q ss_pred CCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc--eeEEEe---cCeeEEEEecCCCCcceEEEEEE
Q psy2776 142 AEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG--RNITYE---NNVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 142 ~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. .++... ++...|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm2_A 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85 (110)
T ss_dssp SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence 4678888888889999999999999999999999999999988763 223222 23458999999999999999999
Q ss_pred EcCCcCeeeEEEEEEeeeec
Q psy2776 217 TNEAGTAETSCTLLVQGKEI 236 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~ 236 (803)
.|..|....++.|.|...+.
T Consensus 86 ~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 86 ANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp ECTTCCEEECCCEEEECCSC
T ss_pred EECCCeEEEEEEEEEECCCC
Confidence 99999998888999987653
No 474
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.31 E-value=8.9e-12 Score=125.86 Aligned_cols=136 Identities=10% Similarity=0.154 Sum_probs=81.4
Q ss_pred cCeeEEEEEeccCCCceeEEEEeeCCce--------------------eeeeecccCCCCceeEEeeeccCcccCCchhh
Q psy2776 420 NNVARFTVVNCSESSEGRYTCKATNEAG--------------------TAETRTMWPGLPLSIVVSLRKADTRVKPPMKR 479 (803)
Q Consensus 420 ~~~~~L~i~~~~~~d~G~Y~C~a~~~~g--------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 479 (803)
.+..+|+|.+++.+|+|.|.|.+.+..+ .....
T Consensus 75 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 127 (248)
T 3u2s_H 75 KDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWG--------------------------- 127 (248)
T ss_dssp GTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEEC---------------------------
T ss_pred CCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeC---------------------------
Confidence 4567899999999999999999987421 00000
Q ss_pred hhcccccccccccceeeeccC-CCCCCccceeeeccccceEEeecceeEEEEEEcCc-C-CCeeEEeeCCeeecCCCcEE
Q psy2776 480 VLQKLAVPFSYKTRTTNLQIQ-SPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGF-P-RPEISWMKNGAEITDSKACR 556 (803)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~-p-~~~v~W~~~g~~i~~~~~~~ 556 (803)
....|.|. .++..|.+..... ...+..|+.+.|.|.+.+. | +..+.|+++|..+.......
T Consensus 128 -------------~~t~l~V~~~~~~~P~v~~~~~---~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~ 191 (248)
T 3u2s_H 128 -------------KGTTVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA 191 (248)
T ss_dssp -------------CCEEEEECSCCCBCCEEEEECC---C------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC
T ss_pred -------------CCEEEEEcccCCCCCEEEEeCC---CccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCc
Confidence 12334443 3333333322211 2234569999999999884 4 35789999986432110000
Q ss_pred EEecCC----eEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEe
Q psy2776 557 IFIDEE----TSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVL 599 (803)
Q Consensus 557 ~~~~~~----~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~ 599 (803)
....++ .+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 192 ~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 237 (248)
T 3u2s_H 192 VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 237 (248)
T ss_dssp EECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred eECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence 111111 2578888888888 99999999998877766666554
No 475
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.30 E-value=1e-11 Score=107.44 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCe-ecc-------CCCCeEEEee-CceEEEEEecCCCCCCce
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNK-PLL-------SSPKKREIFD-GENIILELKEADSETDAG 742 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~-~l~-------~~~~~~~~~~-~~~~~L~i~~v~~~~D~G 742 (803)
+|.|+..+....+.+|++++|.|.+.+.|.+.+.|++++. .+. .+.++.+... .....|.|.++ +.+|+|
T Consensus 6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~D~G 84 (108)
T 3m45_A 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV-SLSDEG 84 (108)
T ss_dssp --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSC-CGGGCE
T ss_pred CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCC-ChhHCe
Confidence 6677788888999999999999999999999999999765 221 3346655433 34778999999 799999
Q ss_pred eEEEEEEccCcceeeeEEEEEEe
Q psy2776 743 DYKVVATNELGSATHGARVTVDV 765 (803)
Q Consensus 743 ~Y~C~a~N~~G~~~~~~~l~V~~ 765 (803)
.|+|.|.| .|..+..+.|.|.+
T Consensus 85 ~Y~C~~~n-~~~~~~~~~L~V~~ 106 (108)
T 3m45_A 85 QYTCSLFT-MPVKTSKAYLTVLG 106 (108)
T ss_dssp EEEEEECS-SSCEEEEEEEEEEC
T ss_pred EEEEEEEc-CCCcEEEEEEEEEc
Confidence 99999999 99999999998854
No 476
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.30 E-value=5e-12 Score=106.65 Aligned_cols=88 Identities=15% Similarity=0.255 Sum_probs=74.8
Q ss_pred CCCCCeeeccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCeeccc-eeEEEecCeeEEEEecCCCCcceEEEEEEEcC
Q psy2776 141 DAEAPVIQEPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKG-RNITYENNVARFTVVNCSESSEGRYTCKATNE 219 (803)
Q Consensus 141 ~~~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 219 (803)
...+|.|...+....+.+|+.+.|.|.+.|.| |.+.|+|++..+.. .++... ...|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~ 82 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT--GEEVEVRDSIPADSGLYACVTSSP 82 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC--SSEEEESSCCGGGSEEEEEEEEET
T ss_pred CCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe--CCEEEECCCChHHCEEEEEEeccC
Confidence 35678888888889999999999999999987 79999999987763 233333 468999999999999999999999
Q ss_pred CcCeeeEEEEEE
Q psy2776 220 AGTAETSCTLLV 231 (803)
Q Consensus 220 ~g~~~~s~~l~V 231 (803)
.|....++.|.|
T Consensus 83 ~g~~~~~~~l~V 94 (95)
T 2ckn_A 83 SGSDTTYFSVNV 94 (95)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCcEEEEEEEEE
Confidence 999888888776
No 477
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.30 E-value=7.1e-12 Score=110.56 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=66.0
Q ss_pred CeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeC----ceEEEEEecCCCCCCceeEEEEEEccCcceeeeEEEEE
Q psy2776 688 GTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDG----ENIILELKEADSETDAGDYKVVATNELGSATHGARVTV 763 (803)
Q Consensus 688 ~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 763 (803)
+...|.|.+.|.|.|.+.|+|+|..+..+.+..+.... ....|.|.++ +.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~N~~G~~~~~~~l~v 99 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP-THYNNGNYTLIAKNPLGTANQTINGHF 99 (118)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESC-CGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCC-ChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence 67789999999999999999999999887766554432 4568999999 789999999999999999999988877
Q ss_pred E
Q psy2776 764 D 764 (803)
Q Consensus 764 ~ 764 (803)
.
T Consensus 100 ~ 100 (118)
T 1wwc_A 100 L 100 (118)
T ss_dssp S
T ss_pred c
Confidence 4
No 478
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=108.94 Aligned_cols=87 Identities=28% Similarity=0.450 Sum_probs=72.1
Q ss_pred CCCCCeeEeccceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 669 PGQAPLFIERFEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 669 ~~~~p~~~~~~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.... ...|.|.++ +.+|+|.|+|.|
T Consensus 7 ~~~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v-~~~d~G~Y~C~a 76 (96)
T 2ens_A 7 GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEI-GPQDQGTYSCVA 76 (96)
T ss_dssp CCCSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------CSEEEEESC-CTTTCEEEECEE
T ss_pred CCCCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------CCEEEECCC-CcccCEEEEEEE
Confidence 3447888888888889999999999999999999999999999876542 237999999 799999999999
Q ss_pred EccCcceeeeEEEEEEe
Q psy2776 749 TNELGSATHGARVTVDV 765 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~~ 765 (803)
.|..|....+..+.|.|
T Consensus 77 ~n~~~~~~~s~~~~v~V 93 (96)
T 2ens_A 77 THSSHGPQESRAVSISI 93 (96)
T ss_dssp CCSSCCCEECCCEEEEE
T ss_pred EeCCCCcEEEEEEEEEE
Confidence 99877665555555544
No 479
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-11 Score=105.98 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCeeEeccce---eEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEE
Q psy2776 672 APLFIERFEE---KTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVA 748 (803)
Q Consensus 672 ~p~~~~~~~~---~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a 748 (803)
+|.++..+.. ..+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|
T Consensus 10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a 87 (113)
T 2cpc_A 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAV-QLEDSGEYLCEI 87 (113)
T ss_dssp CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSC-CTTTCEEEEEES
T ss_pred CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCC-CcccCEEEEEEE
Confidence 4445544444 6788999999999995 8999999999999999888988888887789999999 799999999999
Q ss_pred EccCcceeeeEEEEEE
Q psy2776 749 TNELGSATHGARVTVD 764 (803)
Q Consensus 749 ~N~~G~~~~~~~l~V~ 764 (803)
.| .+..+.|.|.
T Consensus 88 ~n----~~~~~~l~V~ 99 (113)
T 2cpc_A 88 DD----ESASFTVTVT 99 (113)
T ss_dssp SS----CEEEEEEEEE
T ss_pred ec----CcEEEEEEEe
Confidence 99 5667777775
No 480
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.29 E-value=2e-11 Score=113.31 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=77.7
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+... .+...|.|.++..+|+|.|+|.|.|..|....++
T Consensus 49 ~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 128 (154)
T 1fhg_A 49 LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128 (154)
T ss_dssp CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEE
Confidence 467889999999999999999999999999999988877777654 3457999999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 129 ~l~V~~~p 136 (154)
T 1fhg_A 129 ELLVETMG 136 (154)
T ss_dssp EEEEECC-
T ss_pred EEEEeCcC
Confidence 99998876
No 481
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.4e-12 Score=110.29 Aligned_cols=87 Identities=25% Similarity=0.439 Sum_probs=75.8
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEec-CCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFID-EETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~-~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+.+.|.|.+.|.|.+.+.|+|++..+....+..+... .+..+|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 17 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 96 (110)
T 2dm3_A 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96 (110)
T ss_dssp CEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECC
T ss_pred CcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEE
Confidence 467889999999999999999999999999998887665554433 3457999999999999999999999999999999
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 97 ~l~V~~~p 104 (110)
T 2dm3_A 97 ELVVAAKE 104 (110)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998765
No 482
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=109.17 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=68.3
Q ss_pred cceeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeee
Q psy2776 679 FEEKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHG 758 (803)
Q Consensus 679 ~~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~ 758 (803)
+....+.+|+.+.|.|.+.|.| |.+.|+|++..+....++.+. + ..|.|.++ +.+|+|.|+|.|.|.+|..+..
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~--~--~~L~i~~v-~~~D~G~Y~C~a~n~~g~~~~~ 83 (99)
T 2cr3_A 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT--G--EEVEVQDS-VPADSGLYACVTSSPSGSDTTY 83 (99)
T ss_dssp EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC--S--SEEEETTC-CTTTCEEEEEEEEETTEEEEEE
T ss_pred CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE--C--CEEEEccC-CHHHCEEEEEEEEeCCceEEEE
Confidence 3456788999999999999987 799999999998777766543 3 37999999 7999999999999999998888
Q ss_pred EEEEEE
Q psy2776 759 ARVTVD 764 (803)
Q Consensus 759 ~~l~V~ 764 (803)
+.|.|.
T Consensus 84 ~~l~V~ 89 (99)
T 2cr3_A 84 FSVNVS 89 (99)
T ss_dssp EEECBC
T ss_pred EEEEEe
Confidence 877774
No 483
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.28 E-value=1.9e-11 Score=104.76 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=71.4
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCC--cEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSK--ACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLD 593 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s 593 (803)
....+.+|+.+.|.|.+.+ |.+.+.|+|+|..+..+. ++.+..++....|.|.++..+|+|.|+|.|.| .+.+
T Consensus 15 ~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~ 89 (103)
T 1x44_A 15 EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSS 89 (103)
T ss_dssp CCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEE
T ss_pred CCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEE
Confidence 3578899999999999987 779999999999998877 66877777778999999999999999999988 5777
Q ss_pred EEEEEeeeE
Q psy2776 594 LSLQVLGYI 602 (803)
Q Consensus 594 ~~l~V~~~p 602 (803)
+.|.|..+|
T Consensus 90 ~~l~V~~~p 98 (103)
T 1x44_A 90 AKLSVDLKS 98 (103)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 888887755
No 484
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=130.84 Aligned_cols=70 Identities=14% Similarity=0.294 Sum_probs=51.3
Q ss_pred eecCCcEEEEEEECcc-CCC---eeEEEEcCeecccee----EEEe----cCeeEEEEecCCCCcceEEEEEEEcCCcCe
Q psy2776 156 AGFQSSVTLECVVSGV-PTP---DIKWYKDDSLIKGRN----ITYE----NNVARFTVVNCSESSEGRYTCKATNEAGTA 223 (803)
Q Consensus 156 v~~G~~~~L~C~~~g~-p~p---~i~W~~~~~~~~~~~----~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 223 (803)
+..|+.++|.|.+.|. |.| .|.|++++..+.... .... .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999986 333 699999986553210 0011 123479999999999999999999987754
Q ss_pred ee
Q psy2776 224 ET 225 (803)
Q Consensus 224 ~~ 225 (803)
..
T Consensus 260 ~~ 261 (376)
T 2aty_A 260 PI 261 (376)
T ss_pred ce
Confidence 33
No 485
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=9.8e-12 Score=106.71 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=73.0
Q ss_pred cceEEeecceeEEEEEEcCcCC-CeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPR-PEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDL 594 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~ 594 (803)
....+.+|+++.|.|.+.+.|. +.+.|+|+|..+..+.++.+..++...+|.|.++..+|+|.|+|.|. ....++
T Consensus 16 ~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~----~~~~~a 91 (104)
T 2eny_A 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR----GLTSKA 91 (104)
T ss_dssp CCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET----TEEEEE
T ss_pred CCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC----CeeEEE
Confidence 4678999999999999998875 48999999999998888888877778899999999999999999984 456888
Q ss_pred EEEEeeeE
Q psy2776 595 SLQVLGYI 602 (803)
Q Consensus 595 ~l~V~~~p 602 (803)
.|.|..+|
T Consensus 92 ~L~V~~~p 99 (104)
T 2eny_A 92 SLIVRERS 99 (104)
T ss_dssp CEEEECCC
T ss_pred EEEEeCCC
Confidence 89998766
No 486
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.28 E-value=9.4e-13 Score=129.96 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=106.3
Q ss_pred eccCcCeeeecCCcEEEEEEECccCC---CeeEEEEcCeeccceeE-----EEec---CeeEEEEecCCCCcceEEEEEE
Q psy2776 148 QEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWYKDDSLIKGRNI-----TYEN---NVARFTVVNCSESSEGRYTCKA 216 (803)
Q Consensus 148 ~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~~~~~~~~~~-----~~~~---~~~~L~i~~v~~~d~G~Y~C~a 216 (803)
...+....+.+|+.++|.|.+.+.++ +.|.| ++..+..... ...+ ....|.|.++..+|+|.|+|.+
T Consensus 8 ~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~ 85 (214)
T 1ow0_A 8 LHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA 85 (214)
T ss_dssp EECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred EECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence 33456667789999999999998754 68999 4433321100 0001 2357889999999999999999
Q ss_pred EcCCcCeeeEEEEEEeeeecccccceeEEeecceeeEEEeeeccCCCcceeEEEEEEeeccccceeeccccccccceeee
Q psy2776 217 TNEAGTAETSCTLLVQGKEIKESARHIITARGTQRKLVIKRVTQDDETDIGVLALNVKSVSKLKWLARWTSDLESTAWFW 296 (803)
Q Consensus 217 ~n~~g~~~~s~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (803)
.|..+.......+.+....
T Consensus 86 ~~~~~~~~~~~~i~~~~~~------------------------------------------------------------- 104 (214)
T 1ow0_A 86 AYPESKTPLTATLSKSGNT------------------------------------------------------------- 104 (214)
T ss_dssp CCSSCSSCEEEEEECCSSC-------------------------------------------------------------
T ss_pred ecCCCCCceeEeeccCCCC-------------------------------------------------------------
Confidence 9987654433333220000
Q ss_pred eeccCCCccccccccCCceeeeccccceeEEEEe-c-CCc-eeeEEeecCeeccccce----eEEE---EcCcee---EE
Q psy2776 297 WFESKSTPAVEFLSKLPSVTLVPHLGDATFQVEL-S-SPD-IQVKWLKKGKEIKESAR----HIIT---SRGTQR---KL 363 (803)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~-~p~-~~i~W~~~g~~l~~~~~----~~~~---~~~~~~---~l 363 (803)
.+|...+. .+....+..|+.+.|.|.+ + .|. +.+.|+|||..+..+.. .... .++... .|
T Consensus 105 -----~~P~v~~~--~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l 177 (214)
T 1ow0_A 105 -----FRPEVHLL--PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSIL 177 (214)
T ss_dssp -----CCCEEEEE--CCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEE
T ss_pred -----CCCEEEec--CCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEE
Confidence 00100000 0111123468889999999 5 454 69999999999876521 1222 344332 23
Q ss_pred EEeecCCCCCccEEEEEecccccee--eeeee
Q psy2776 364 VIKRVTQDDETDIGVLALNVKSVSK--LKWLD 393 (803)
Q Consensus 364 ~i~~~~~~d~g~y~c~~~~~~~~~~--~~~~~ 393 (803)
.+.....++.|.|+|.|.|..-... ++|..
T Consensus 178 ~v~~~~~~~~~~ytC~v~n~~l~~~~~~~~~~ 209 (214)
T 1ow0_A 178 RVAAEDWKKGDTFSCMVGHEALPLAFTQKTID 209 (214)
T ss_dssp EEEHHHHHHTCCEEEEEECTTCTTSEECCEEC
T ss_pred EECHHHccCCCEEEEEEECCCCCCCceEEEEE
Confidence 4444433458999999999775433 45643
No 487
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.28 E-value=1.6e-11 Score=107.71 Aligned_cols=90 Identities=18% Similarity=0.368 Sum_probs=72.9
Q ss_pred CCeeeccCcCeeeecCCcEEEEEEECcc---CCCeeEEEEcCee-cc---ceeEEEec--------CeeEEEEecCCCCc
Q psy2776 144 APVIQEPLKDSVAGFQSSVTLECVVSGV---PTPDIKWYKDDSL-IK---GRNITYEN--------NVARFTVVNCSESS 208 (803)
Q Consensus 144 ~p~i~~~~~~~~v~~G~~~~L~C~~~g~---p~p~i~W~~~~~~-~~---~~~~~~~~--------~~~~L~i~~v~~~d 208 (803)
.|.|...|.++.+.+|++++|.|.+.+. |.|.|.|||+... +. ..++.+.. ....|+|.++..+|
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 86 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence 3567778899999999999999999764 8999999997421 11 12233221 24789999999999
Q ss_pred ceEEEEEEEcCCcCeeeEEEEEEee
Q psy2776 209 EGRYTCKATNEAGTAETSCTLLVQG 233 (803)
Q Consensus 209 ~G~Y~C~a~n~~g~~~~s~~l~V~~ 233 (803)
+|.|+|.|.|..|..+.+++|.|.+
T Consensus 87 aG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 87 AGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999999999999999999998
No 488
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.28 E-value=1.8e-11 Score=105.95 Aligned_cols=90 Identities=17% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCCeeeccCcCeeeecCCcEEEEEEECccCC---CeeEEEEcCeec-c---ceeEEEe--------cCeeEEEEecCCCC
Q psy2776 143 EAPVIQEPLKDSVAGFQSSVTLECVVSGVPT---PDIKWYKDDSLI-K---GRNITYE--------NNVARFTVVNCSES 207 (803)
Q Consensus 143 ~~p~i~~~~~~~~v~~G~~~~L~C~~~g~p~---p~i~W~~~~~~~-~---~~~~~~~--------~~~~~L~i~~v~~~ 207 (803)
..|.|...+..+.+.+|+.++|.|.+.|.|. |.|.|+|++... . ..++... .....|.|.+++.+
T Consensus 3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 82 (108)
T 3cx2_A 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82 (108)
T ss_dssp CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence 3567777888899999999999999999988 999999987321 1 1122221 12468999999999
Q ss_pred cceEEEEEEEcCCcCeeeEEEEEEe
Q psy2776 208 SEGRYTCKATNEAGTAETSCTLLVQ 232 (803)
Q Consensus 208 d~G~Y~C~a~n~~g~~~~s~~l~V~ 232 (803)
|+|.|+|.|.|..|....++.|.|.
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999885
No 489
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.27 E-value=1.8e-11 Score=122.26 Aligned_cols=135 Identities=12% Similarity=0.181 Sum_probs=83.4
Q ss_pred CeeEEEEEeccCCCceeEEEEeeCCce-----eeeeecccCCCCceeEEeeeccCcccCCchhhhhccccccccccccee
Q psy2776 421 NVARFTVVNCSESSEGRYTCKATNEAG-----TAETRTMWPGLPLSIVVSLRKADTRVKPPMKRVLQKLAVPFSYKTRTT 495 (803)
Q Consensus 421 ~~~~L~i~~~~~~d~G~Y~C~a~~~~g-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (803)
+...|+|.+++.+|+|.|.|.+.+..+ ...... ...
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~---------------------------------------~~~ 117 (230)
T 3n9g_H 77 STVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWG---------------------------------------QGT 117 (230)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEEC---------------------------------------CCE
T ss_pred CEEEEEECCCChhhCEEEEEEEccCCCCcccccccccC---------------------------------------CCE
Confidence 467899999999999999999987531 111100 022
Q ss_pred eeccCC-CCCCccceeeeccccceEEeecceeEEEEEEcCcCC--CeeEEeeCCeeecCCCcE-EEEecCC-----eEEE
Q psy2776 496 NLQIQS-PPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPR--PEISWMKNGAEITDSKAC-RIFIDEE-----TSTI 566 (803)
Q Consensus 496 ~l~v~~-~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~--~~v~W~~~g~~i~~~~~~-~~~~~~~-----~~~L 566 (803)
.|.|.. ++..|.+..... ...+..|+.+.|.|.+.+.++ +.+.| ++..+..+... ......+ .+.|
T Consensus 118 ~l~V~~~~~~~P~v~~~~~---~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L 192 (230)
T 3n9g_H 118 LVTVSSASTKGPSVFPLAP---SSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVV 192 (230)
T ss_dssp EEEECSSCCBCCEEEEECC---CCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEE
T ss_pred EEEEEecCCCCCEEEecCC---CccccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEE
Confidence 333332 222222221111 123457999999999988543 46889 55554322100 0011111 2579
Q ss_pred EEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEee
Q psy2776 567 AIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLG 600 (803)
Q Consensus 567 ~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~ 600 (803)
.|.....+| |.|+|.|.|..+.......|.|..
T Consensus 193 ~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~ 225 (230)
T 3n9g_H 193 TVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS 225 (230)
T ss_dssp EEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred EECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence 999999999 999999999988877777776643
No 490
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.27 E-value=9.2e-11 Score=123.56 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=106.4
Q ss_pred ceEEeecceeEEEEEEcCcC--------------CCeeEEeeC--Ce--ee---cCC----------CcEEEE-------
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--------------RPEISWMKN--GA--EI---TDS----------KACRIF------- 558 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--------------~~~v~W~~~--g~--~i---~~~----------~~~~~~------- 558 (803)
...+.+|++++|.|.....+ ...+.|++. |+ .+ .++ .+..+.
T Consensus 167 sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~~ 246 (401)
T 3f8u_B 167 APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEP 246 (401)
T ss_dssp SCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCCS
T ss_pred cEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccccc
Confidence 46789999999999986443 346899863 21 11 011 111111
Q ss_pred --ecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEEEeeeEeEeeecccccEEEeeeeCCccceEEEcccccCce
Q psy2776 559 --IDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQVLGYIIQQQEKNSLKFTKVATLDPSTLQYTVENLRDKSE 636 (803)
Q Consensus 559 --~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 636 (803)
...++..|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 247 ~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~------------------------------------ 290 (401)
T 3f8u_B 247 WGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK------------------------------------ 290 (401)
T ss_dssp SCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB------------------------------------
T ss_pred ccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc------------------------------------
Confidence 112457999999999999999999999887777777787765
Q ss_pred eEEEEEEecCCCCCCCccceeeeeeecccCCCCCCCCeeEeccceeE-EecCC-eEEEEEEEeec-CC--CceEEe-eCC
Q psy2776 637 YYFQVFAENSVGLGPEATTELVALATHATLGSPGQAPLFIERFEEKT-VKEKG-TIRLMAKVKAS-PA--PSIVWF-RNN 710 (803)
Q Consensus 637 ~~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~g~-~v~L~C~~~g~-p~--~~v~W~-~~~ 710 (803)
+|.+...+.... +..|+ .++|.|.+.|. |. +.+.|+ +++
T Consensus 291 -----------------------------------pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW~~rdg 335 (401)
T 3f8u_B 291 -----------------------------------PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG 335 (401)
T ss_dssp -----------------------------------CCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEEEEESS
T ss_pred -----------------------------------CCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEEEecCC
Confidence 344433333322 45676 89999999986 65 689995 765
Q ss_pred ---eeccCCC-----CeEEEeeCc---eEEEEEecCCCC-CCceeEEEEEEccC---cceeeeEE
Q psy2776 711 ---KPLLSSP-----KKREIFDGE---NIILELKEADSE-TDAGDYKVVATNEL---GSATHGAR 760 (803)
Q Consensus 711 ---~~l~~~~-----~~~~~~~~~---~~~L~i~~v~~~-~D~G~Y~C~a~N~~---G~~~~~~~ 760 (803)
..+.... ......++. .+.|.|... +. ++.+.|+|.+.|.. |..+.+++
T Consensus 336 ~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~-~~e~~g~~YTC~V~H~sL~~g~rs~sVt 399 (401)
T 3f8u_B 336 PGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPV-TTEQHGARYACRIHHPSLPASGRSAEVT 399 (401)
T ss_dssp SSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCC-CGGGTTCEEEEEEECTTSCTTCEEEEEE
T ss_pred CCCceecccccccccccccCCCceEEEEEEEEEccC-ccccCCCEEEEEEEcCCCCCCcceEEEE
Confidence 2221111 111112222 234555443 22 24459999999976 55444443
No 491
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.26 E-value=1e-11 Score=105.88 Aligned_cols=88 Identities=24% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCeeeccC----cCeeeecCCcEEEEEEECccCCCeeEEEEcCeecccee----EEEecCeeEEEEecCCCCcceEEEEE
Q psy2776 144 APVIQEPL----KDSVAGFQSSVTLECVVSGVPTPDIKWYKDDSLIKGRN----ITYENNVARFTVVNCSESSEGRYTCK 215 (803)
Q Consensus 144 ~p~i~~~~----~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~ 215 (803)
+|.|...+ ....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ........+|.|.+++.+|+|.|+|.
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 83 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEE
Confidence 45555332 45678899999999999999999999999998876431 34444556899999999999999999
Q ss_pred EEcCCcCeeeEEEEEE
Q psy2776 216 ATNEAGTAETSCTLLV 231 (803)
Q Consensus 216 a~n~~g~~~~s~~l~V 231 (803)
|.|..|....++.|.|
T Consensus 84 a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 84 VENEYGSINHTYHLDV 99 (100)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEE
Confidence 9999999888888776
No 492
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.26 E-value=3.5e-11 Score=101.41 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=70.3
Q ss_pred cceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEE
Q psy2776 516 KSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLS 595 (803)
Q Consensus 516 ~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~ 595 (803)
....+.+|+.+.|.|.+ +.|.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.| |....++.
T Consensus 16 ~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~ 90 (95)
T 2k1m_A 16 RSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFD 90 (95)
T ss_dssp CCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEE
T ss_pred CcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEE
Confidence 46788999999999999 78889999999999998888888877777789999999999999999999 66777788
Q ss_pred EEEe
Q psy2776 596 LQVL 599 (803)
Q Consensus 596 l~V~ 599 (803)
|.|.
T Consensus 91 l~V~ 94 (95)
T 2k1m_A 91 LKVI 94 (95)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8774
No 493
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.26 E-value=1.6e-12 Score=115.53 Aligned_cols=103 Identities=24% Similarity=0.325 Sum_probs=83.9
Q ss_pred ceeeeccCCCCCCccceeeeccccceEEeecceeEEEEEEcCcCCCe-eEEeeCCeeecCC--CcEEEE--ecCC--eEE
Q psy2776 493 RTTNLQIQSPPQQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPE-ISWMKNGAEITDS--KACRIF--IDEE--TST 565 (803)
Q Consensus 493 ~~~~l~v~~~p~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~-v~W~~~g~~i~~~--~~~~~~--~~~~--~~~ 565 (803)
..+.|.|..+|.+.. .....+.+|+.+.|.|.+.|.|.|. +.|++++..+... .++.+. ...+ .+.
T Consensus 5 ~~~~l~V~~~P~i~~-------~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T 2cry_A 5 SSGTLTVNGPPIISS-------TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77 (122)
T ss_dssp CCCCCCCCSSCCEEE-------ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEE
T ss_pred eEEEEEEecCCCccC-------CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEE
Confidence 367788888886532 2356788999999999999999987 9999999988753 555553 2233 569
Q ss_pred EEEeeeccCcC-eEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 566 IAIYSVVRADT-STYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 566 L~i~~v~~~ds-G~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
|.|.++..+|+ |.|+|.|.|..|.....+.|.|..++
T Consensus 78 L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 115 (122)
T 2cry_A 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115 (122)
T ss_dssp EECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred EEEcCCChhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence 99999999999 99999999999999999999887643
No 494
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=104.76 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=70.3
Q ss_pred eeEEecCCeEEEEEEEeecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCcceeeeEE
Q psy2776 681 EKTVKEKGTIRLMAKVKASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELGSATHGAR 760 (803)
Q Consensus 681 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G~~~~~~~ 760 (803)
...+.+|+++.|.|.+. .|.+.+.|+|+|..+..+.++.+..++....|.|.++ +.+|+|.|+|.|.| ...++.
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~~----~~~~~~ 93 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQA-GQAEAGEYSCEAGG----QQLSFR 93 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTC-CTTTCSCEEEEETT----EECCEE
T ss_pred cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCC-CcccCEEEEEEcCC----CcEEEE
Confidence 45789999999999998 8999999999999998888988888888889999999 79999999999965 456678
Q ss_pred EEEEee
Q psy2776 761 VTVDVE 766 (803)
Q Consensus 761 l~V~~~ 766 (803)
|.|..+
T Consensus 94 l~V~~p 99 (102)
T 2eo1_A 94 LQVAGQ 99 (102)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 888643
No 495
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.26 E-value=2.4e-11 Score=105.76 Aligned_cols=91 Identities=20% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCeeEeccceeEEecCCeEEEEEEEeecC--CCceEEeeCCeeccCCCCeEEEe-eC-------ceEEEEEecCCCCCCc
Q psy2776 672 APLFIERFEEKTVKEKGTIRLMAKVKASP--APSIVWFRNNKPLLSSPKKREIF-DG-------ENIILELKEADSETDA 741 (803)
Q Consensus 672 ~p~~~~~~~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~~~~l~~~~~~~~~~-~~-------~~~~L~i~~v~~~~D~ 741 (803)
+|.|...+....+.+|++++|.|.+.|.| .+.+.|++++..+.......... .. ....|.|.++ +.+|+
T Consensus 10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~ 88 (112)
T 3so5_A 10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNV-EFTSE 88 (112)
T ss_dssp SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSC-CGGGC
T ss_pred CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecc-ccccC
Confidence 88898888889999999999999999654 57899999999886543211111 11 1468999999 78999
Q ss_pred eeEEEEEEccCcc-eeeeEEEEE
Q psy2776 742 GDYKVVATNELGS-ATHGARVTV 763 (803)
Q Consensus 742 G~Y~C~a~N~~G~-~~~~~~l~V 763 (803)
|.|+|.|.|..|. .+..+.|.|
T Consensus 89 G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 89 GXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEEEEEEeCCCcEEEeEEEEEe
Confidence 9999999999999 468888876
No 496
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.26 E-value=1.2e-11 Score=104.88 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=67.1
Q ss_pred eEeccceeEEecCCeEEEEEEEe-ecCCCceEEeeCCeeccCCCCeEEEeeCceEEEEEecCCCCCCceeEEEEEEccCc
Q psy2776 675 FIERFEEKTVKEKGTIRLMAKVK-ASPAPSIVWFRNNKPLLSSPKKREIFDGENIILELKEADSETDAGDYKVVATNELG 753 (803)
Q Consensus 675 ~~~~~~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~a~N~~G 753 (803)
++..+....+.+|+++.|.|.+. |.|.+.+.|++++....... ... .+. .|.|.++ +.+|+|.|+|.|.|..|
T Consensus 13 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~-~~~--~L~i~~v-~~~D~G~Y~C~a~n~~g 86 (98)
T 1gl4_B 13 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMD-FNG--ILTIRNV-QPSDAGTYVCTGSNMFA 86 (98)
T ss_dssp EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEE-ETT--EEEECSC-CGGGCEEEEEEEECSSC
T ss_pred EEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--eec-CCC--EEEEeCC-ChhhCEEEEEEecCCCC
Confidence 33444567899999999999998 68999999999865443322 122 222 6999999 79999999999999999
Q ss_pred ceeeeEEEEEE
Q psy2776 754 SATHGARVTVD 764 (803)
Q Consensus 754 ~~~~~~~l~V~ 764 (803)
..+..+.|.|+
T Consensus 87 ~~~~~~~l~V~ 97 (98)
T 1gl4_B 87 MDQGTATLHVQ 97 (98)
T ss_dssp EEEEEEEEEEC
T ss_pred ccccEEEEEEe
Confidence 99999998885
No 497
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.25 E-value=4.3e-11 Score=104.51 Aligned_cols=97 Identities=14% Similarity=0.249 Sum_probs=80.6
Q ss_pred eeeeccCCCC-CCccceeeeccccceEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeec
Q psy2776 494 TTNLQIQSPP-QQPAIKLVDSNLKSQRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVV 572 (803)
Q Consensus 494 ~~~l~v~~~p-~~~~~~~~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~ 572 (803)
.+.|.|...| .+ ...+....+.+|+++.|.|.+.+. |.+.|+|++..+..+.++.+..++....|.|.++.
T Consensus 10 ~~~l~V~~~pp~~------~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~ 81 (113)
T 2edh_A 10 SAMLTVRALPIKF------TEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLV 81 (113)
T ss_dssp CCCCCCCCSCCCE------EECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCC
T ss_pred EEEEEEEcCCCcc------cccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCC
Confidence 5667777554 32 122346789999999999999875 68999999999998888888877777899999999
Q ss_pred cCcCeEEEEEEEcCCCCeEEEEEEEEeeeE
Q psy2776 573 RADTSTYTVTATNAAGSTSLDLSLQVLGYI 602 (803)
Q Consensus 573 ~~dsG~Y~C~a~n~~g~~s~s~~l~V~~~p 602 (803)
.+|+|.|+|.| |....++.|.|..+|
T Consensus 82 ~~D~G~Y~C~a----~~~~~~~~l~V~~~p 107 (113)
T 2edh_A 82 AEDAGEYLCMC----GKERTSAMLTVRAMP 107 (113)
T ss_dssp STTCEEEEEEE----TTEEEEEEEEECCCC
T ss_pred hhhCEEEEEEe----CCCCEEEEEEEeCCC
Confidence 99999999999 778889999998766
No 498
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.24 E-value=8e-11 Score=100.22 Aligned_cols=80 Identities=25% Similarity=0.251 Sum_probs=72.4
Q ss_pred eEEeecceeEEEEEEcCcCCCeeEEeeCCeeecCCCcEEEEecCCeEEEEEeeeccCcCeEEEEEEEcCCCCeEEEEEEE
Q psy2776 518 QRLSVKSQWKVEVKYFGFPRPEISWMKNGAEITDSKACRIFIDEETSTIAIYSVVRADTSTYTVTATNAAGSTSLDLSLQ 597 (803)
Q Consensus 518 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~dsG~Y~C~a~n~~g~~s~s~~l~ 597 (803)
..+.+|+.+.|.|.+. .|.+.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.| |....++.|.
T Consensus 18 ~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~ 92 (100)
T 2yuv_A 18 YQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92 (100)
T ss_dssp EEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEE
T ss_pred cEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEE
Confidence 5678999999999998 7999999999999998888888887777789999999999999999999 7788899999
Q ss_pred EeeeE
Q psy2776 598 VLGYI 602 (803)
Q Consensus 598 V~~~p 602 (803)
|..+|
T Consensus 93 V~~~P 97 (100)
T 2yuv_A 93 VRSGP 97 (100)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98766
No 499
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.24 E-value=2.5e-10 Score=111.77 Aligned_cols=71 Identities=11% Similarity=0.291 Sum_probs=52.4
Q ss_pred ccCcCeeeecCCcEEEEEEECccCCCeeEEEEcCe-----ec--------cceeEEEe-----cCeeEEEEecCCCCcce
Q psy2776 149 EPLKDSVAGFQSSVTLECVVSGVPTPDIKWYKDDS-----LI--------KGRNITYE-----NNVARFTVVNCSESSEG 210 (803)
Q Consensus 149 ~~~~~~~v~~G~~~~L~C~~~g~p~p~i~W~~~~~-----~~--------~~~~~~~~-----~~~~~L~i~~v~~~d~G 210 (803)
..+..+.+.+|++++|.|.+.+.+ +.+.|+|... .+ ...++... .+..+|.|.+++.+|+|
T Consensus 6 q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G 84 (207)
T 1ypz_E 6 QSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSG 84 (207)
T ss_dssp ESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCE
T ss_pred ECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCE
Confidence 345667889999999999998654 4799998531 11 11223322 34568999999999999
Q ss_pred EEEEEEEcCC
Q psy2776 211 RYTCKATNEA 220 (803)
Q Consensus 211 ~Y~C~a~n~~ 220 (803)
.|.|.+.+..
T Consensus 85 ~Y~C~~~~~~ 94 (207)
T 1ypz_E 85 TYFCAADTWH 94 (207)
T ss_dssp EEEEEEECBC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 500
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.24 E-value=1.2e-10 Score=115.69 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred ceEEeecceeEEEEEEcCcC--CCeeEEeeCC--e---eec---------CCCcEEEEe--cCCeEEEEEeeeccCcCeE
Q psy2776 517 SQRLSVKSQWKVEVKYFGFP--RPEISWMKNG--A---EIT---------DSKACRIFI--DEETSTIAIYSVVRADTST 578 (803)
Q Consensus 517 ~~~v~~g~~v~l~C~~~g~p--~~~v~W~~~g--~---~i~---------~~~~~~~~~--~~~~~~L~i~~v~~~dsG~ 578 (803)
...+.+|++++|.|.+.+.+ ...+.|+|.. . .|. ...++.+.. ......|.|.++..+|+|.
T Consensus 10 ~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~ 89 (229)
T 1hxm_A 10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS 89 (229)
T ss_dssp EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred EEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeE
Confidence 56789999999999998654 3679999852 1 111 124565553 2456799999999999999
Q ss_pred EEEEEEcCC
Q psy2776 579 YTVTATNAA 587 (803)
Q Consensus 579 Y~C~a~n~~ 587 (803)
|.|.+.+..
T Consensus 90 Y~C~~~~~~ 98 (229)
T 1hxm_A 90 YYCACDTLG 98 (229)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 999998863
Done!